Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : kappa | Genbank acc : NC_010275

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 45

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	24	lcl\|NC_010275.1_cdsid_YP_001650889.1	HHsearch (proba=100.00%)
Portal	21	lcl\|NC_010275.1_cdsid_YP_001650886.1	HHsearch (proba=100.00%)
TermL	22	lcl\|NC_010275.1_cdsid_YP_001650887.1	Blast (e-value=0)
MTP	NOT FOUND
Sheath	30	lcl\|NC_010275.1_cdsid_YP_001650895.1	HHsearch (proba=100.00%)
Ad1	26	lcl\|NC_010275.1_cdsid_YP_001650891.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	28	lcl\|NC_010275.1_cdsid_YP_001650893.1	HHsearch (proba=100.00%)
Tc1	27	lcl\|NC_010275.1_cdsid_YP_001650892.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:270 protein:vir:78777 protein:vir:1153	K139 phiO18P phi CTX	100 % 48 % 32 %
Portal	protein:vir:267 protein:vir:98853 protein:vir:78749	K139 F108 phiO18P	100 % 49 % 48 %
TermL	protein:vir:268 protein:vir:78781 protein:vir:3744	K139 phiO18P HP1	100 % 57 % 50 %
Sheath	protein:vir:276 protein:vir:78782 protein:vir:3788	K139 phiO18P HP2	100 % 43 % 41 %
Ad1	protein:vir:272 protein:vir:78780 protein:vir:3748	K139 phiO18P HP1	100 % 44 % 37 %
Ne1	protein:vir:274 protein:vir:78755 protein:vir:98860	K139 phiO18P F108	100 % 26 % 25 %
Tc1	protein:vir:273 protein:vir:78779 protein:vir:3786	K139 phiO18P HP2	100 % 38 % 24 %