Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Lj771 | Genbank acc : NC_010179

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	33	lcl\|NC_010179.2_cdsid_YP_001642376.1	HHsearch (proba=100.00%)
Portal	30	lcl\|NC_010179.2_cdsid_YP_001642372.2	HHsearch (proba=100.00%)
TermL	29	lcl\|NC_010179.2_cdsid_YP_001642371.1	Blast (e-value=0)
MTP	40	lcl\|NC_010179.2_cdsid_YP_001642383.1	Blast (e-value=8e-85)
Sheath	39	lcl\|NC_010179.2_cdsid_YP_001642382.1	HHsearch (proba=100.00%)
Ad1	34	lcl\|NC_010179.2_cdsid_YP_001642377.1	HHsearch (proba=100.00%)
Hc1	35	lcl\|NC_010179.2_cdsid_YP_001642378.1	HHsearch (proba=100.00%)
Ne1	36	lcl\|NC_010179.2_cdsid_YP_001642379.1	HHsearch (proba=100.00%)
Tc1	37	lcl\|NC_010179.2_cdsid_YP_001642380.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105464 protein:vir:79008 protein:vir:78920	KC5a phiC2 A006	60 % 36 % 27 %
Portal	protein:vir:105461 protein:vir:102950 protein:vir:102330	KC5a EJ-1 phi CD119	94 % 41 % 34 %
TermL	protein:vir:105460 protein:vir:105897 protein:vir:94084	KC5a phiETA3 96	77 % 46 % 46 %
MTP	protein:vir:105471 protein:vir:79038 protein:vir:102914	KC5a phiC2 EJ-1	93 % 36 % 33 %
Sheath	protein:vir:105470 protein:vir:102957 protein:vir:78986	KC5a EJ-1 phiC2	92 % 38 % 30 %
Ad1	protein:vir:79050 protein:vir:102961 protein:vir:102336	phiC2 EJ-1 phi CD119	23 % 19 % 23 %
Hc1	protein:vir:105466 protein:vir:78985 protein:vir:102962	KC5a phiC2 EJ-1	93 % 30 % 27 %
Ne1	protein:vir:105467 protein:vir:79034 protein:vir:102963	KC5a phiC2 EJ-1	94 % 27 % 25 %
Tc1	protein:vir:105468 protein:vir:79047 protein:vir:102955	KC5a phiC2 EJ-1	93 % 21 % 18 %