Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 33 lcl|NC_010179.2_cdsid_YP_001642376.1 HHsearch (proba=100.00%)
Portal 30 lcl|NC_010179.2_cdsid_YP_001642372.2 HHsearch (proba=100.00%)
TermL 29 lcl|NC_010179.2_cdsid_YP_001642371.1 Blast (e-value=0)
MTP 40 lcl|NC_010179.2_cdsid_YP_001642383.1 Blast (e-value=8e-85)
Sheath 39 lcl|NC_010179.2_cdsid_YP_001642382.1 HHsearch (proba=100.00%)
Ad1 34 lcl|NC_010179.2_cdsid_YP_001642377.1 HHsearch (proba=100.00%)
Hc1 35 lcl|NC_010179.2_cdsid_YP_001642378.1 HHsearch (proba=100.00%)
Ne1 36 lcl|NC_010179.2_cdsid_YP_001642379.1 HHsearch (proba=100.00%)
Tc1 37 lcl|NC_010179.2_cdsid_YP_001642380.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:105464
protein:vir:79008
protein:vir:78920
KC5a
phiC2
A006
60 %
36 %
27 %
Portal protein:vir:105461
protein:vir:102950
protein:vir:102330
KC5a
EJ-1
phi CD119
94 %
41 %
34 %
TermL protein:vir:105460
protein:vir:105897
protein:vir:94084
KC5a
phiETA3
96
77 %
46 %
46 %
MTP protein:vir:105471
protein:vir:79038
protein:vir:102914
KC5a
phiC2
EJ-1
93 %
36 %
33 %
Sheath protein:vir:105470
protein:vir:102957
protein:vir:78986
KC5a
EJ-1
phiC2
92 %
38 %
30 %
Ad1 protein:vir:79050
protein:vir:102961
protein:vir:102336
phiC2
EJ-1
phi CD119
23 %
19 %
23 %
Hc1 protein:vir:105466
protein:vir:78985
protein:vir:102962
KC5a
phiC2
EJ-1
93 %
30 %
27 %
Ne1 protein:vir:105467
protein:vir:79034
protein:vir:102963
KC5a
phiC2
EJ-1
94 %
27 %
25 %
Tc1 protein:vir:105468
protein:vir:79047
protein:vir:102955
KC5a
phiC2
EJ-1
93 %
21 %
18 %