Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Pf-WMP4 | Genbank acc : NC_008367 | Aclame index mge :1525

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 45

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	37	lcl\|Aclame:protein:vir:94622\|NCBI_annot:PfWMP4_37\|genbank:acc:YP_762667;genbank:gi:115304375;genbank	HHsearch (proba=100.00%)
Portal	39	lcl\|Aclame:protein:vir:94599\|NCBI_annot:PfWMP4_39\|genbank:acc:YP_762669;genbank:gi:115304377;genbank	HHsearch (proba=100.00%)
TermL	40	lcl\|Aclame:protein:vir:94598\|NCBI_annot:PfWMP4_40\|genbank:acc:YP_762670;genbank:gi:115304378;genbank	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	36	lcl\|Aclame:protein:vir:94601\|NCBI_annot:PfWMP4_36\|genbank:acc:YP_762666;genbank:gi:115304374;genbank	HHsearch (proba=100.00%)
Hc3	35	lcl\|Aclame:protein:vir:94602\|NCBI_annot:PfWMP4_35\|genbank:acc:YP_762665;genbank:gi:115304373;genbank	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:94622 protein:vir:80180 protein:vir:1541	Pf-WMP4 Pf-WMP3 phiYeO3-12	100 % 38 % 19 %
Portal	protein:vir:94599 protein:vir:80165 protein:vir:8883	Pf-WMP4 Pf-WMP3 gh-1	100 % 31 % 17 %
TermL	protein:vir:94598 protein:vir:80169 protein:vir:2600	Pf-WMP4 Pf-WMP3 SIO1	100 % 32 % 23 %
Ad3	protein:vir:94601 protein:vir:80185 protein:vir:100027	Pf-WMP4 Pf-WMP3 P-SSP7	100 % 31 % 16 %
Hc3	protein:vir:94602 protein:vir:80177 protein:vir:3133	Pf-WMP4 Pf-WMP3 VpV262	100 % 30 % 18 %