Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : gh-1 | Genbank acc : NC_004665 | Aclame index mge :161

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 35

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	22	lcl\|Aclame:protein:vir:8885\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	20	lcl\|Aclame:protein:vir:8883\|NCBI_annot:head-tail	HHsearch (proba=100.00%)
TermL	33	lcl\|Aclame:protein:vir:8897\|NCBI_annot:DNA	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	23	lcl\|Aclame:protein:vir:8886\|NCBI_annot:tail	HHsearch (proba=100.00%)
Hc3	24	lcl\|Aclame:protein:vir:8887\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:8885 protein:vir:94576 protein:vir:94711	gh-1 Berlin K1F	100 % 78 % 74 %
Portal	protein:vir:8883 protein:vir:10447 protein:vir:2198	gh-1 phiA1122 T7	100 % 69 % 69 %
TermL	protein:vir:8897 protein:vir:94726 protein:vir:99686	gh-1 K1F VP4	100 % 70 % 69 %
Ad3	protein:vir:8886 protein:vir:94565 protein:vir:3365	gh-1 Berlin T3	100 % 64 % 64 %
Hc3	protein:vir:8887 protein:vir:94583 protein:vir:2203	gh-1 Berlin T7	100 % 57 % 56 %