Query lcl|Aclame:protein:vir:102239|NCBI_annot:gp9|genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Match_columns 527 No_of_seqs 32 out of 35 Neff 4.9 Searched_HMMs 1612 Date Mon Dec 2 13:04:50 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_60 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_60_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:102239 Length: 527 100.0 1E-203 8E-207 1132.9 43.0 527 1-527 1-527 (527) 2 protein:vir:101494 Length: 527 100.0 2E-203 1E-206 1132.3 43.1 527 1-527 1-527 (527) 3 protein:vir:7430 Length: 563 # 100.0 3E-177 2E-180 988.1 41.4 514 1-527 1-545 (563) 4 protein:vir:95806 Length: 440 100.0 2.1E-59 1.3E-62 342.3 40.8 427 24-517 1-440 (440) 5 protein:vir:79043 Length: 479 100.0 6.5E-58 4E-61 334.1 42.2 461 1-517 7-479 (479) 6 protein:vir:96839 Length: 474 100.0 4.1E-58 2.5E-61 335.2 40.7 458 1-524 6-474 (474) 7 protein:vir:99781 Length: 511 100.0 4.1E-58 2.5E-61 335.2 38.9 470 1-522 13-511 (511) 8 protein:vir:99522 Length: 470 100.0 1.2E-57 7.6E-61 332.6 40.0 452 1-519 4-470 (470) 9 protein:vir:106639 Length: 481 100.0 2.1E-57 1.3E-60 331.3 40.1 458 1-522 6-481 (481) 10 protein:vir:5961 Length: 503 # 100.0 1.4E-56 9E-60 326.7 44.2 478 1-527 5-502 (503) 11 protein:vir:93747 Length: 472 100.0 8.9E-57 5.5E-60 327.9 42.1 455 1-524 5-472 (472) 12 protein:vir:97171 Length: 512 100.0 1.2E-56 7.3E-60 327.2 42.3 469 1-527 27-509 (512) 13 protein:vir:106571 Length: 499 100.0 7.4E-57 4.6E-60 328.3 41.0 465 1-527 1-490 (499) 14 protein:vir:97447 Length: 474 100.0 6.4E-57 4E-60 328.6 40.3 454 1-524 7-474 (474) 15 protein:vir:94498 Length: 474 100.0 6.4E-57 4E-60 328.6 40.3 454 1-524 7-474 (474) 16 protein:vir:9306 Length: 511 # 100.0 5.8E-57 3.6E-60 328.9 39.8 472 1-527 13-508 (511) 17 protein:vir:95113 Length: 474 100.0 3.1E-56 1.9E-59 324.9 41.8 450 1-524 7-474 (474) 18 protein:vir:103951 Length: 511 100.0 3.5E-56 2.2E-59 324.6 41.8 471 1-527 13-508 (511) 19 protein:vir:2427 Length: 485 # 100.0 2.8E-56 1.8E-59 325.1 41.1 457 11-527 1-484 (485) 20 protein:vir:9922 Length: 489 # 100.0 4.8E-56 3E-59 323.9 41.5 453 1-526 9-489 (489) 21 protein:vir:105292 Length: 478 100.0 3E-56 1.8E-59 325.0 39.9 461 1-522 6-478 (478) 22 protein:vir:104082 Length: 485 100.0 5.2E-56 3.2E-59 323.7 40.4 460 1-527 5-482 (485) 23 protein:vir:96366 Length: 511 100.0 4.4E-56 2.7E-59 324.1 39.9 470 1-527 13-508 (511) 24 protein:vir:78805 Length: 511 100.0 4.4E-56 2.7E-59 324.1 39.9 470 1-527 13-508 (511) 25 protein:vir:78537 Length: 480 100.0 2.6E-56 1.6E-59 325.3 38.2 459 1-527 1-474 (480) 26 protein:vir:1236 Length: 483 # 100.0 1.3E-55 7.8E-59 321.6 41.7 449 1-524 29-483 (483) 27 protein:vir:94805 Length: 492 100.0 2.7E-55 1.7E-58 319.8 42.7 459 1-524 1-492 (492) 28 protein:vir:78227 Length: 480 100.0 7.7E-56 4.8E-59 322.7 38.7 461 1-527 1-476 (480) 29 protein:vir:102950 Length: 471 100.0 7.2E-55 4.5E-58 317.4 44.0 449 3-519 1-471 (471) 30 protein:vir:96240 Length: 511 100.0 2E-55 1.3E-58 320.4 40.7 471 1-527 13-508 (511) 31 protein:vir:9871 Length: 429 # 100.0 2.7E-55 1.7E-58 319.7 37.3 425 3-517 1-429 (429) 32 protein:vir:107112 Length: 478 100.0 1.2E-54 7.4E-58 316.2 40.2 461 1-522 1-478 (478) 33 protein:vir:96494 Length: 501 100.0 7.4E-55 4.6E-58 317.3 38.9 459 1-526 26-501 (501) 34 protein:vir:97336 Length: 492 100.0 2.4E-54 1.5E-57 314.6 41.5 458 1-524 1-492 (492) 35 protein:vir:96179 Length: 468 100.0 3.5E-54 2.2E-57 313.6 40.2 448 1-517 1-468 (468) 36 protein:vir:96266 Length: 474 100.0 5.6E-54 3.4E-57 312.5 41.1 456 1-522 7-474 (474) 37 protein:vir:95899 Length: 474 100.0 5.6E-54 3.4E-57 312.5 41.1 456 1-522 7-474 (474) 38 protein:vir:7768 Length: 484 # 100.0 2.6E-54 1.6E-57 314.4 38.8 456 1-527 1-482 (484) 39 protein:vir:99072 Length: 479 100.0 7.2E-54 4.5E-57 311.9 39.6 455 1-527 1-474 (479) 40 protein:vir:3609 Length: 452 # 100.0 1.5E-53 9.5E-57 310.1 40.9 438 1-522 1-452 (452) 41 protein:vir:105461 Length: 470 100.0 2.6E-53 1.6E-56 308.9 41.8 454 3-517 1-470 (470) 42 protein:vir:94546 Length: 506 100.0 2.2E-53 1.4E-56 309.2 40.8 465 1-526 1-506 (506) 43 protein:vir:2500 Length: 501 # 100.0 2.7E-53 1.7E-56 308.8 40.9 473 1-527 3-498 (501) 44 protein:vir:3964 Length: 453 # 100.0 2.7E-53 1.6E-56 308.8 39.2 438 1-522 1-453 (453) 45 protein:vir:4898 Length: 502 # 100.0 2.3E-53 1.4E-56 309.1 38.8 461 1-526 27-502 (502) 46 protein:vir:2341 Length: 488 # 100.0 3.6E-53 2.2E-56 308.1 38.6 450 1-521 1-488 (488) 47 protein:vir:2732 Length: 501 # 100.0 6.3E-53 3.9E-56 306.8 39.2 458 1-522 1-501 (501) 48 protein:vir:80680 Length: 441 100.0 1.9E-52 1.1E-55 304.2 41.3 432 3-517 1-441 (441) 49 protein:vir:4223 Length: 486 # 100.0 7.9E-53 4.9E-56 306.2 39.2 463 1-525 1-486 (486) 50 protein:vir:105889 Length: 474 100.0 4.6E-52 2.9E-55 302.0 41.6 442 1-519 1-474 (474) 51 protein:vir:94101 Length: 474 100.0 4.6E-52 2.9E-55 302.0 41.6 442 1-519 1-474 (474) 52 protein:vir:105819 Length: 456 100.0 1.8E-52 1.1E-55 304.2 38.7 434 22-518 1-456 (456) 53 protein:vir:102602 Length: 456 100.0 1.8E-52 1.1E-55 304.2 38.7 434 22-518 1-456 (456) 54 protein:vir:99916 Length: 504 100.0 6.9E-52 4.3E-55 301.1 39.0 464 1-527 1-503 (504) 55 protein:vir:733 Length: 453 # 100.0 4.5E-52 2.8E-55 302.1 37.6 437 1-521 9-453 (453) 56 protein:vir:98444 Length: 434 100.0 5.3E-51 3.3E-54 296.2 39.6 422 20-520 1-434 (434) 57 protein:vir:102330 Length: 451 100.0 6.5E-51 4E-54 295.7 38.9 434 3-510 1-451 (451) 58 protein:vir:7987 Length: 456 # 100.0 1.1E-50 6.8E-54 294.5 39.0 442 1-518 2-456 (456) 59 protein:vir:9751 Length: 422 # 100.0 3.4E-50 2.1E-53 291.8 33.7 407 1-502 1-422 (422) 60 protein:vir:38 Length: 496 # N 100.0 3.6E-48 2.2E-51 280.7 42.2 467 1-515 16-496 (496) 61 protein:vir:78083 Length: 537 100.0 2.7E-48 1.7E-51 281.4 41.0 479 1-527 3-528 (537) 62 protein:vir:9568 Length: 410 # 100.0 4.3E-49 2.7E-52 285.7 36.3 396 26-501 1-410 (410) 63 protein:vir:94742 Length: 409 100.0 9.3E-49 5.7E-52 283.9 32.6 395 1-481 1-409 (409) 64 protein:vir:8184 Length: 474 # 100.0 3.2E-48 2E-51 280.9 35.1 443 14-517 1-474 (474) 65 protein:vir:80959 Length: 499 100.0 2.7E-46 1.7E-49 270.4 43.3 470 1-515 16-499 (499) 66 protein:vir:1587 Length: 508 # 100.0 4.5E-46 2.8E-49 269.2 42.4 480 1-515 1-508 (508) 67 protein:vir:1634 Length: 409 # 100.0 9.7E-48 6E-51 278.3 32.0 395 1-481 1-409 (409) 68 protein:vir:79703 Length: 505 100.0 1.8E-45 1.1E-48 265.9 44.4 472 1-510 1-505 (505) 69 protein:vir:9815 Length: 500 # 100.0 3.4E-44 2.1E-47 258.9 42.2 468 1-517 1-500 (500) 70 protein:vir:3028 Length: 500 # 100.0 3.4E-44 2.1E-47 258.9 42.2 468 1-517 1-500 (500) 71 protein:vir:98883 Length: 517 100.0 7.8E-44 4.8E-47 256.9 41.8 479 1-517 1-517 (517) 72 protein:vir:78907 Length: 518 100.0 4.1E-43 2.5E-46 253.0 44.5 465 1-513 1-518 (518) 73 protein:vir:4782 Length: 522 # 100.0 1.4E-41 8.4E-45 244.6 43.9 492 1-522 1-522 (522) 74 protein:vir:94956 Length: 452 99.9 7.7E-26 4.8E-29 158.3 35.1 433 1-515 1-452 (452) 75 protein:vir:97265 Length: 513 99.9 4.1E-24 2.5E-27 148.8 36.8 459 1-527 1-502 (513) 76 protein:vir:95149 Length: 501 99.9 3.9E-22 2.4E-25 138.0 38.9 456 1-515 1-501 (501) 77 protein:vir:80453 Length: 535 99.9 4.5E-22 2.8E-25 137.6 36.1 482 1-527 15-533 (535) 78 protein:vir:79538 Length: 502 99.9 4.5E-20 2.8E-23 126.7 35.7 428 1-523 1-502 (502) 79 protein:vir:78393 Length: 489 99.8 2.3E-18 1.4E-21 117.3 39.3 455 8-521 1-489 (489) 80 protein:vir:95014 Length: 491 99.8 2.3E-18 1.4E-21 117.3 38.1 457 8-522 1-491 (491) 81 protein:vir:95542 Length: 548 99.8 1.7E-18 1.1E-21 118.0 34.6 441 1-527 1-507 (548) 82 protein:vir:93630 Length: 776 99.8 3.9E-19 2.4E-22 121.5 30.2 511 1-527 1-690 (776) 83 protein:vir:389 Length: 530 # 99.8 8.3E-18 5.2E-21 114.2 36.2 439 1-525 7-530 (530) 84 protein:vir:6382 Length: 553 # 99.8 4.1E-17 2.5E-20 110.4 36.9 442 1-522 20-553 (553) 85 protein:vir:3420 Length: 533 # 99.8 7E-17 4.4E-20 109.1 36.5 444 1-527 3-533 (533) 86 protein:vir:10321 Length: 495 99.8 3.2E-17 2E-20 111.0 34.4 437 1-525 1-495 (495) 87 protein:vir:80040 Length: 461 99.8 9.8E-19 6.1E-22 119.3 25.9 428 1-511 1-461 (461) 88 protein:vir:96738 Length: 505 99.8 5.9E-17 3.7E-20 109.6 34.6 441 1-524 19-505 (505) 89 protein:vir:96783 Length: 488 99.7 1.7E-16 1E-19 107.1 33.5 429 1-505 14-488 (488) 90 protein:vir:108295 Length: 711 99.7 2E-16 1.2E-19 106.7 28.5 505 3-527 1-664 (711) 91 protein:vir:80165 Length: 651 99.6 9.4E-14 5.8E-17 92.0 33.4 482 1-527 15-591 (651) 92 protein:vir:2764 Length: 714 # 99.5 6.4E-13 4E-16 87.4 28.6 479 15-527 1-622 (714) 93 protein:vir:9950 Length: 714 # 99.5 6.4E-13 4E-16 87.4 28.6 479 15-527 1-622 (714) 94 protein:vir:10117 Length: 714 99.5 6.4E-13 4E-16 87.4 28.6 479 15-527 1-622 (714) 95 protein:vir:817 Length: 714 # 99.5 6.4E-13 4E-16 87.4 28.6 479 15-527 1-622 (714) 96 protein:vir:3296 Length: 714 # 99.5 6.4E-13 4E-16 87.4 28.6 479 15-527 1-622 (714) 97 protein:vir:104437 Length: 714 99.5 3.7E-13 2.3E-16 88.7 26.5 488 1-527 1-622 (714) 98 protein:vir:8846 Length: 705 # 99.5 3.3E-12 2.1E-15 83.5 31.6 501 1-527 1-625 (705) 99 protein:vir:95449 Length: 584 99.4 1.1E-12 6.9E-16 86.1 28.3 483 1-513 1-584 (584) 100 protein:vir:105619 Length: 772 99.4 4.5E-13 2.8E-16 88.2 26.1 506 1-527 1-708 (772) 101 protein:vir:102668 Length: 547 99.4 5.6E-11 3.5E-14 76.8 34.0 469 3-524 1-547 (547) 102 protein:vir:95315 Length: 559 99.4 2E-11 1.3E-14 79.2 30.3 474 1-526 1-559 (559) 103 protein:vir:5249 Length: 437 # 99.3 1.6E-11 9.9E-15 79.8 28.8 412 5-525 1-437 (437) 104 protein:vir:107742 Length: 537 99.3 1.5E-11 9E-15 80.0 28.1 437 1-527 35-535 (537) 105 protein:vir:104338 Length: 422 99.3 3E-11 1.9E-14 78.3 28.7 392 1-519 1-422 (422) 106 protein:vir:94049 Length: 532 99.3 2.7E-11 1.6E-14 78.6 28.1 422 1-527 39-529 (532) 107 protein:vir:103765 Length: 549 99.3 1.4E-10 8.6E-14 74.6 33.9 473 1-524 1-549 (549) 108 protein:vir:7321 Length: 556 # 99.3 1.6E-10 1E-13 74.2 32.7 483 1-526 1-556 (556) 109 protein:vir:107662 Length: 427 99.3 5.8E-11 3.6E-14 76.7 27.4 398 1-521 1-427 (427) 110 protein:vir:79647 Length: 435 99.3 4.3E-11 2.7E-14 77.4 26.5 397 1-524 5-435 (435) 111 protein:vir:107404 Length: 555 99.2 3.6E-10 2.2E-13 72.4 35.2 463 1-514 1-555 (555) 112 protein:vir:107822 Length: 555 99.2 3.6E-10 2.2E-13 72.4 35.2 463 1-514 1-555 (555) 113 protein:vir:98506 Length: 555 99.2 3.6E-10 2.2E-13 72.4 35.2 463 1-514 1-555 (555) 114 protein:vir:96068 Length: 765 99.2 1.5E-10 9.2E-14 74.5 28.0 433 1-527 55-536 (765) 115 protein:vir:105429 Length: 708 99.2 3.6E-10 2.2E-13 72.3 28.7 489 1-527 1-609 (708) 116 protein:vir:95821 Length: 763 99.2 7.2E-10 4.5E-13 70.7 28.7 468 1-527 1-625 (763) 117 protein:vir:99563 Length: 862 99.1 7.5E-10 4.7E-13 70.6 26.0 430 1-527 84-574 (862) 118 protein:vir:9263 Length: 725 # 99.0 8.8E-09 5.4E-12 64.8 28.2 490 1-527 1-605 (725) 119 protein:vir:100920 Length: 725 98.9 1.1E-08 7E-12 64.2 28.5 485 1-527 1-605 (725) 120 protein:vir:8883 Length: 543 # 98.9 1.4E-08 8.9E-12 63.6 33.0 476 1-527 1-539 (543) 121 protein:vir:3361 Length: 535 # 98.9 1.6E-08 9.8E-12 63.4 33.2 476 1-526 1-535 (535) 122 protein:vir:77597 Length: 725 98.8 3.5E-08 2.2E-11 61.5 28.2 491 1-527 1-605 (725) 123 protein:vir:105520 Length: 706 98.8 3.7E-08 2.3E-11 61.3 32.9 489 1-527 1-615 (706) 124 protein:vir:94709 Length: 522 98.7 9.2E-08 5.7E-11 59.2 35.5 462 1-524 1-522 (522) 125 protein:vir:99232 Length: 526 98.7 1.3E-07 7.9E-11 58.4 27.0 420 1-527 1-464 (526) 126 protein:vir:79233 Length: 526 98.7 1.3E-07 7.9E-11 58.4 27.2 420 1-527 1-468 (526) 127 protein:vir:3520 Length: 720 # 98.6 1.6E-07 9.9E-11 57.9 31.7 489 1-527 1-618 (720) 128 protein:vir:172 Length: 708 # 98.6 1.7E-07 1.1E-10 57.7 28.0 491 1-527 1-609 (708) 129 protein:vir:94599 Length: 641 98.6 1.7E-07 1.1E-10 57.6 24.6 500 1-527 5-641 (641) 130 protein:vir:103860 Length: 528 98.6 9.4E-08 5.8E-11 59.1 22.1 422 1-527 1-474 (528) 131 protein:vir:10447 Length: 536 98.6 2.2E-07 1.4E-10 57.1 33.9 472 1-527 1-535 (536) 132 protein:vir:99672 Length: 532 98.6 2.4E-07 1.5E-10 56.9 33.7 470 1-517 1-532 (532) 133 protein:vir:1538 Length: 535 # 98.6 3E-07 1.8E-10 56.4 36.9 476 1-526 1-535 (535) 134 protein:vir:63755 Length: 547 98.5 3.4E-07 2.1E-10 56.1 26.7 404 1-527 48-518 (547) 135 protein:vir:1986 Length: 512 # 98.5 2.7E-07 1.7E-10 56.6 22.0 415 1-527 1-447 (512) 136 protein:vir:94572 Length: 535 98.5 4E-07 2.5E-10 55.7 32.9 472 1-527 1-535 (535) 137 protein:vir:100039 Length: 522 98.5 4.1E-07 2.5E-10 55.6 31.8 459 1-526 1-522 (522) 138 protein:vir:8418 Length: 409 # 98.5 4.3E-07 2.7E-10 55.5 22.6 395 1-525 1-409 (409) 139 protein:vir:2198 Length: 536 # 98.5 5.4E-07 3.4E-10 54.9 34.9 474 1-527 1-535 (536) 140 protein:vir:3153 Length: 467 # 98.4 6E-07 3.7E-10 54.7 27.6 388 39-527 1-459 (467) 141 protein:vir:3843 Length: 397 # 98.4 6.9E-07 4.3E-10 54.4 26.5 380 1-525 1-397 (397) 142 protein:vir:78696 Length: 542 98.4 8.9E-07 5.5E-10 53.8 31.9 464 1-527 1-537 (542) 143 protein:vir:1785 Length: 555 # 98.3 1.3E-06 8E-10 52.9 32.7 472 1-527 1-550 (555) 144 protein:vir:1266 Length: 416 # 98.3 1.8E-06 1.1E-09 52.1 28.4 397 1-524 1-416 (416) 145 protein:vir:9359 Length: 348 # 98.2 2.5E-06 1.5E-09 51.3 23.8 333 60-521 1-348 (348) 146 protein:vir:7017 Length: 515 # 98.2 2.7E-06 1.7E-09 51.1 32.5 458 1-520 1-515 (515) 147 protein:vir:6240 Length: 457 # 98.2 3.1E-06 1.9E-09 50.8 26.1 416 1-525 1-457 (457) 148 protein:vir:108215 Length: 469 98.1 5.1E-06 3.2E-09 49.6 26.7 415 1-527 1-460 (469) 149 protein:vir:96988 Length: 516 98.1 5.2E-06 3.2E-09 49.5 31.9 458 1-515 1-516 (516) 150 protein:vir:3139 Length: 599 # 97.9 1E-05 6.3E-09 48.0 27.8 495 1-520 1-599 (599) 151 protein:vir:4952 Length: 386 # 97.9 1.4E-05 8.8E-09 47.2 29.7 372 1-518 1-386 (386) 152 protein:vir:99853 Length: 488 97.9 1.4E-05 8.9E-09 47.1 28.3 395 1-527 3-422 (488) 153 protein:vir:103330 Length: 517 97.8 1.6E-05 9.7E-09 46.9 35.7 456 1-518 3-517 (517) 154 protein:vir:4854 Length: 386 # 97.8 1.8E-05 1.1E-08 46.6 25.4 368 1-518 1-386 (386) 155 protein:vir:107880 Length: 491 97.8 2.2E-05 1.3E-08 46.2 32.5 395 1-527 15-439 (491) 156 protein:vir:79063 Length: 491 97.8 2.2E-05 1.4E-08 46.1 25.0 393 1-527 2-439 (491) 157 protein:vir:78942 Length: 510 97.7 2.5E-05 1.5E-08 45.8 34.2 448 1-513 1-510 (510) 158 protein:vir:1326 Length: 457 # 97.7 3E-05 1.9E-08 45.4 25.9 417 1-527 1-452 (457) 159 protein:vir:102080 Length: 429 97.7 3.1E-05 1.9E-08 45.3 27.7 403 1-524 1-429 (429) 160 protein:vir:7407 Length: 392 # 97.6 3.5E-05 2.2E-08 45.0 29.4 373 1-526 3-392 (392) 161 protein:vir:80644 Length: 551 97.6 3.7E-05 2.3E-08 44.9 28.9 400 1-527 52-522 (551) 162 protein:vir:102855 Length: 432 97.6 4.1E-05 2.5E-08 44.6 28.5 406 1-524 1-432 (432) 163 protein:vir:107605 Length: 432 97.6 4.1E-05 2.5E-08 44.6 28.5 406 1-524 1-432 (432) 164 protein:vir:105002 Length: 432 97.6 4.1E-05 2.5E-08 44.6 28.5 406 1-524 1-432 (432) 165 protein:vir:81072 Length: 432 97.5 4.7E-05 2.9E-08 44.3 26.9 397 1-521 7-432 (432) 166 protein:vir:6322 Length: 510 # 97.5 4.8E-05 3E-08 44.3 36.7 448 1-513 1-510 (510) 167 protein:vir:4194 Length: 540 # 97.5 5.3E-05 3.3E-08 44.0 22.8 418 15-527 1-482 (540) 168 protein:vir:105641 Length: 516 97.5 6E-05 3.7E-08 43.7 30.7 463 1-521 1-516 (516) 169 protein:vir:101648 Length: 518 97.5 6.2E-05 3.9E-08 43.6 28.0 402 13-527 1-438 (518) 170 protein:vir:1380 Length: 422 # 97.5 6.4E-05 4E-08 43.6 27.5 404 1-514 1-422 (422) 171 protein:vir:98816 Length: 446 97.4 7.2E-05 4.5E-08 43.3 28.5 397 1-482 10-446 (446) 172 protein:vir:4995 Length: 384 # 97.3 0.0001 6.2E-08 42.5 25.8 374 1-518 1-384 (384) 173 protein:vir:3989 Length: 392 # 97.3 0.00011 6.6E-08 42.4 29.4 367 1-526 3-392 (392) 174 protein:vir:1023 Length: 392 # 97.3 0.00011 6.6E-08 42.4 29.4 367 1-526 3-392 (392) 175 protein:vir:7853 Length: 518 # 97.2 0.00013 8.1E-08 41.9 28.0 402 13-527 1-438 (518) 176 protein:vir:97060 Length: 432 97.1 0.00016 1E-07 41.4 27.5 407 1-521 1-432 (432) 177 protein:vir:4337 Length: 434 # 97.1 0.00017 1E-07 41.3 29.8 379 1-518 1-434 (434) 178 protein:vir:10362 Length: 432 97.1 0.00018 1.1E-07 41.1 27.6 407 1-521 1-432 (432) 179 protein:vir:2683 Length: 412 # 97.1 0.00019 1.2E-07 41.0 25.8 388 1-523 1-412 (412) 180 protein:vir:79772 Length: 648 97.1 0.00019 1.2E-07 41.0 29.3 421 1-527 59-513 (648) 181 protein:vir:100150 Length: 437 97.0 0.0002 1.2E-07 40.9 26.6 404 1-523 1-437 (437) 182 protein:vir:4454 Length: 414 # 97.0 0.00021 1.3E-07 40.8 29.2 387 1-519 1-414 (414) 183 protein:vir:78161 Length: 355 96.9 0.00027 1.7E-07 40.2 17.7 313 167-527 1-339 (355) 184 protein:vir:100249 Length: 431 96.9 0.0003 1.8E-07 39.9 24.6 375 1-518 1-431 (431) 185 protein:vir:5737 Length: 419 # 96.8 0.00031 1.9E-07 39.8 27.7 387 1-524 1-419 (419) 186 protein:vir:96980 Length: 409 96.8 0.00032 2E-07 39.8 26.8 377 1-520 1-409 (409) 187 protein:vir:93943 Length: 409 96.7 0.00039 2.4E-07 39.3 26.9 378 1-520 1-409 (409) 188 protein:vir:80211 Length: 514 96.6 0.00046 2.9E-07 38.9 33.5 454 4-515 1-514 (514) 189 protein:vir:94426 Length: 409 96.4 0.00064 4E-07 38.1 26.8 377 1-521 1-409 (409) 190 protein:vir:80796 Length: 574 96.4 0.00067 4.2E-07 38.0 29.2 404 1-527 55-530 (574) 191 protein:vir:103219 Length: 201 96.4 0.00042 2.6E-07 39.1 13.0 191 265-520 1-201 (201) 192 protein:vir:93610 Length: 454 96.3 0.00076 4.7E-07 37.7 27.3 404 11-527 1-436 (454) 193 protein:vir:102727 Length: 945 96.0 0.0011 6.7E-07 36.8 32.8 408 1-527 78-539 (945) 194 protein:vir:105064 Length: 421 95.9 0.0013 7.8E-07 36.5 29.2 383 1-525 1-421 (421) 195 protein:vir:105782 Length: 449 95.7 0.0016 9.9E-07 35.9 19.3 399 1-527 1-448 (449) 196 protein:vir:9702 Length: 406 # 95.5 0.002 1.2E-06 35.4 26.1 377 1-521 1-406 (406) 197 protein:vir:81095 Length: 416 95.5 0.002 1.3E-06 35.3 26.2 389 1-516 1-416 (416) 198 protein:vir:4598 Length: 416 # 95.5 0.002 1.3E-06 35.3 26.2 389 1-516 1-416 (416) 199 protein:vir:79511 Length: 448 95.4 0.0021 1.3E-06 35.3 30.0 392 1-527 1-442 (448) 200 protein:vir:95254 Length: 488 95.4 0.0022 1.4E-06 35.2 31.1 441 1-527 1-488 (488) 201 protein:vir:81152 Length: 411 95.3 0.0024 1.5E-06 34.9 28.5 384 1-511 1-411 (411) 202 protein:vir:189 Length: 424 # 95.1 0.0027 1.7E-06 34.7 26.3 375 1-513 8-424 (424) 203 protein:vir:102118 Length: 409 95.1 0.0028 1.8E-06 34.5 28.8 389 1-515 1-409 (409) 204 protein:vir:101647 Length: 460 95.0 0.0031 1.9E-06 34.3 28.7 415 1-526 1-460 (460) 205 protein:vir:95599 Length: 563 94.9 0.0031 1.9E-06 34.3 28.8 413 1-527 48-535 (563) 206 protein:vir:99312 Length: 563 94.9 0.0031 1.9E-06 34.3 28.8 413 1-527 48-535 (563) 207 protein:vir:483 Length: 413 # 94.8 0.0034 2.1E-06 34.1 28.2 386 1-525 1-413 (413) 208 protein:vir:100187 Length: 385 94.8 0.0035 2.2E-06 34.0 22.6 366 1-514 1-385 (385) 209 protein:vir:95378 Length: 406 94.8 0.0035 2.2E-06 34.0 25.3 382 1-522 1-406 (406) 210 protein:vir:1884 Length: 424 # 94.7 0.0036 2.2E-06 34.0 25.4 375 1-513 1-424 (424) 211 protein:vir:96579 Length: 576 94.6 0.0039 2.4E-06 33.8 28.5 414 1-527 43-538 (576) 212 protein:vir:106716 Length: 698 94.6 0.0039 2.4E-06 33.8 24.9 432 1-527 78-569 (698) 213 protein:vir:1082 Length: 359 # 94.4 0.0044 2.7E-06 33.5 22.4 341 22-480 1-359 (359) 214 protein:vir:4828 Length: 382 # 93.9 0.0059 3.7E-06 32.8 29.7 369 1-518 1-382 (382) 215 protein:vir:4156 Length: 542 # 93.9 0.0061 3.8E-06 32.7 29.9 398 15-527 1-470 (542) 216 protein:vir:4509 Length: 424 # 93.4 0.0079 4.9E-06 32.1 29.2 387 1-524 1-424 (424) 217 protein:vir:100882 Length: 383 92.1 0.013 7.9E-06 31.0 23.9 362 1-515 1-383 (383) 218 protein:vir:100691 Length: 535 90.7 0.02 1.2E-05 29.9 30.9 424 1-527 34-518 (535) 219 protein:vir:99452 Length: 651 90.6 0.02 1.2E-05 29.9 28.7 411 1-527 78-552 (651) 220 protein:vir:77981 Length: 448 90.1 0.023 1.4E-05 29.6 27.4 394 1-527 1-441 (448) 221 protein:vir:9408 Length: 441 # 89.7 0.025 1.5E-05 29.4 27.2 403 1-517 1-441 (441) 222 protein:vir:79984 Length: 441 89.7 0.025 1.5E-05 29.4 27.2 403 1-517 1-441 (441) 223 protein:vir:101541 Length: 694 89.6 0.026 1.6E-05 29.3 23.8 430 1-527 77-558 (694) 224 protein:vir:98396 Length: 441 89.0 0.029 1.8E-05 29.0 27.2 406 1-517 1-441 (441) 225 protein:vir:1431 Length: 419 # 88.8 0.03 1.9E-05 28.9 31.7 378 1-527 1-418 (419) 226 protein:vir:94666 Length: 723 86.1 0.048 3E-05 27.8 30.6 389 1-527 1-428 (723) 227 protein:vir:960 Length: 413 # 85.8 0.05 3.1E-05 27.7 25.3 377 1-525 1-413 (413) 228 protein:vir:8317 Length: 409 # 85.3 0.054 3.4E-05 27.5 22.8 373 1-513 1-409 (409) 229 protein:vir:101289 Length: 395 83.7 0.066 4.1E-05 27.0 21.3 366 1-519 1-395 (395) 230 protein:vir:100650 Length: 395 83.7 0.066 4.1E-05 27.0 21.3 366 1-519 1-395 (395) 231 protein:vir:9507 Length: 395 # 83.7 0.066 4.1E-05 27.0 21.3 366 1-519 1-395 (395) 232 protein:vir:3868 Length: 417 # 83.6 0.067 4.2E-05 27.0 23.0 392 1-525 1-417 (417) 233 protein:vir:80134 Length: 403 83.6 0.067 4.2E-05 27.0 20.4 378 1-519 1-403 (403) 234 protein:vir:98853 Length: 219 81.8 0.083 5.1E-05 26.5 11.3 204 192-445 1-219 (219) 235 protein:vir:3648 Length: 695 # 75.8 0.14 8.9E-05 25.2 25.3 431 1-527 78-559 (695) 236 protein:vir:78589 Length: 695 72.9 0.18 0.00011 24.7 25.5 429 1-527 78-559 (695) 237 protein:vir:6210 Length: 394 # 68.8 0.23 0.00014 24.1 26.2 362 1-523 1-394 (394) 238 protein:vir:78641 Length: 278 65.2 0.29 0.00018 23.6 22.1 263 60-440 1-278 (278) 239 protein:vir:8100 Length: 466 # 60.6 0.37 0.00023 23.0 25.6 389 1-523 1-466 (466) 240 protein:vir:80333 Length: 419 60.3 0.37 0.00023 22.9 29.1 372 1-527 1-411 (419) 241 protein:vir:81218 Length: 423 55.0 0.49 0.0003 22.3 31.6 384 1-521 1-423 (423) 242 protein:vir:95965 Length: 385 52.6 0.55 0.00034 22.0 19.1 359 1-517 1-385 (385) 243 protein:vir:104500 Length: 537 21.7 2.6 0.0016 18.4 25.8 436 1-527 21-530 (537) No 1 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=100.00 E-value=1.3e-203 Score=1132.85 Aligned_cols=527 Identities=100% Similarity=1.487 Sum_probs=522.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) ||||||||++++||+.|..+|||.|+++|++||+||++|+|||+||+++|+.||||++++++++||+||++|+|++.++| T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~r~~~~ps~~~~~~~~~~~ 80 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) T ss_pred CCccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCccccccceeeehhhHHhhCCccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCC Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~ 160 (527) |+.|+++++++.+|+|+++||+||++|||++||+|+||||++||||||+|+|||+|++|.||+|+++||++|||++|||+ T Consensus 81 ~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP~~~f~~ed~d~ 160 (527) T protein:vir:10 81 LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) T ss_pred eccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCcceeeeeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcc Q lcl|Aclame:pro 161 PGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE 240 (527) Q Consensus 161 ~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~ 240 (527) .++|++|||+++|++|++++++.||+|+.+|+++.++.|.|+.+|+|.||.+||++|+|+|+++.|++++.++..+++++ T Consensus 161 ~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~ 240 (527) T protein:vir:10 161 PGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE 240 (527) T ss_pred CCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccccccchhhhhhhcCcee Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999 Q ss_pred cccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecC Q lcl|Aclame:pro 241 EEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTIS 320 (527) Q Consensus 241 e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~ 320 (527) +++|||||+|||||||||.++++++||+|+|+++++++||||++|||+|+||+|+|+||++++|++++|.+|+..||+|+ T Consensus 241 l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~vd~~G~~~~~~Vg 320 (527) T protein:vir:10 241 EEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTIS 320 (527) T ss_pred eecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecccccccccCCcCccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 321 PLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELK 400 (527) Q Consensus 321 pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~ 400 (527) ||+||+|++++||+.|+++++|++|++||++|+++||++|+||++|||+||+++++||+||+++|+||++|+++||+.+. T Consensus 321 PG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~ 400 (527) T protein:vir:10 321 PLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELK 400 (527) T ss_pred CceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH Q lcl|Aclame:pro 401 SVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE 480 (527) Q Consensus 401 ~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~ 480 (527) +++.|++++++.|||++|+++.+.++...+.|+|+|++++|+|++++|+++++|+++||||++|||++|.++||+++++. T Consensus 401 ~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGiiS~etAv~~L~~~~g~eD~E~ 480 (527) T protein:vir:10 401 SVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE 480 (527) T ss_pred HHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCchHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 481 DFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 481 ~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +++++.++.+++|+++++|.+++|+++++++|++|+++||++||+|| T Consensus 481 E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 481 DFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred HHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCCC Confidence 99999999999999999999999999999999999999999999999 No 2 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=100.00 E-value=1.7e-203 Score=1132.27 Aligned_cols=527 Identities=99% Similarity=1.478 Sum_probs=522.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) ||||||||++++||+.|..+|||.|+++|++||+||++|+|||+||+++|+.||||++++++++||+||++|+|++.++| T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~r~~~~ps~~~~~~~~~~~ 80 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) T ss_pred CCccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCccccccceeeehhhHHhhCCccee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCC Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~ 160 (527) |+.|+++++++.+|+|+++||+||++|||++||+|+||||++||||||+|+|||+|++|.||+|+++||++|||++|||+ T Consensus 81 ~~~g~~~~~~~~~e~v~~~lr~~~~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP~~~f~~ed~d~ 160 (527) T protein:vir:10 81 LGQGLKWEFSKKDAKVDDAIKVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) T ss_pred eccCccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCcceeeeeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcc Q lcl|Aclame:pro 161 PGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE 240 (527) Q Consensus 161 ~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~ 240 (527) .++|++|||+++|++|++++++.||+|+.+|+++.++.|.|+.+|+|.||.+||++|+|+|+++.|++++.++..+++++ T Consensus 161 ~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~ 240 (527) T protein:vir:10 161 PGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE 240 (527) T ss_pred CCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccccccchhhhhhhcCcee Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999999999 Q ss_pred cccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecC Q lcl|Aclame:pro 241 EEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTIS 320 (527) Q Consensus 241 e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~ 320 (527) +++|||||+|||||||||.++++++||+|+|+++++++||||++|||+|+||+|+|+||++++|++++|.+|+..||+|+ T Consensus 241 l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~vd~~G~~~~~~Vg 320 (527) T protein:vir:10 241 EEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTIS 320 (527) T ss_pred eecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecccccccccCCcCccccC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 321 PLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELK 400 (527) Q Consensus 321 pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~ 400 (527) ||+||+|++++||+.|+++++|++|++||++|+++||++|+||++|||+||+++++||+||+++|+||++|+++||+.+. T Consensus 321 PG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~ 400 (527) T protein:vir:10 321 PLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELK 400 (527) T ss_pred CceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH Q lcl|Aclame:pro 401 SVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE 480 (527) Q Consensus 401 ~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~ 480 (527) +++.|++++++.|||++|+++.+.++...+.|+|+|++++|+|++++|+++++|+++||||++|||++|.++||+++++. T Consensus 401 ~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGi~S~~tAv~~L~~~~g~eD~E~ 480 (527) T protein:vir:10 401 SVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLLQLWEAGLIPAKKLTEELSKIMGFELTEE 480 (527) T ss_pred HHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCChHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 481 DFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 481 ~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +++++.++.+++|+++++|.+++|+++++++|++|+++||++||+|| T Consensus 481 E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 481 DFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred HHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCCC Confidence 99999999999999999999999999999999999999999999999 No 3 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=100.00 E-value=3.3e-177 Score=988.15 Aligned_cols=514 Identities=36% Similarity=0.605 Sum_probs=466.5 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |||||+||++.++||.+.+. |||+++|++||+||++|+|||+||+|+|++||||+| ++++++|||+|||+|+++| T Consensus 1 m~~~~~q~~p~~~~fp~~~a--~wV~~~D~~RlaaY~ly~d~y~n~~~el~~il~G~d---r~~~~~ps~r~~V~~~~~~ 75 (563) T protein:vir:74 1 MPYNHKQYDPAKPFLRGGDD--NIVDENDKNRVRAYDLYENIYLNSAETLKLVLRGDD---SVPILMPSGRKIVEAVHRF 75 (563) T ss_pred CCccccccCCCccccccccc--ccCCHHHHHHHHHHHHHHHhhcCchhhhhhhcCCCc---eeeeccchHHHHHHHHHHh Confidence 99999999999999999988 999999999999999999999999999999999998 7889999999999999999 Q ss_pred hccCccc--cccCcch----hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEE Q lcl|Aclame:pro 81 LGQGLKW--EFSKKDA----KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP 154 (527) Q Consensus 81 Lg~~~~~--~i~~~~~----~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp 154 (527) ||.++.| +.+.+++ .|+.+||+||++|+|++||++++|||++||||||+|+|||+|++|.||+++++||++||| T Consensus 76 Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~~~e~l~~~~~~~~r~a~vlGDgvf~l~wDp~K~~g~R~rv~~vDP~~~fp 155 (563) T protein:vir:74 76 LGVGFDYLVEPDMGDEGIRQSLNAYFRTTFKREAIKAKFTSNKRWGLIRGDAHFYIHADPNKKAGERISVDEVDPRQIFL 155 (563) T ss_pred cCCCcEEecCccccCcchHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhcceeEEEeeccccccCCCceEeecCCceeee Confidence 9886666 3344333 378999999999999999999999999999999999999999999999999999999999 Q ss_pred EecCCCCCceEEEEEEE---eeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccc----cccc Q lcl|Aclame:pro 155 YEDPRYPGQVLGVYLVD---EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRP----ESPL 227 (527) Q Consensus 155 ~~d~d~~~~v~~vh~a~---~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~----~~~~ 227 (527) ++|||.. .++|++. +|++|++++ +++.||.+|+.+.++.| +.++.+.++.+||++|+||++. ..+. T Consensus 156 ~~dpd~v---~g~~~v~v~~~~~~pdd~~--~~~~r~~~~~~~lndeg--~~~~~~~~dae~w~lg~wd~r~~~~~~~~~ 228 (563) T protein:vir:74 156 IEDGSTV---VGFHMVDIVQDFRSPDDPS--KKLARRRTFRRVRNDEG--MFTGRISSELTHWTLGNWDDRGAISDEQAR 228 (563) T ss_pred ccCCCCc---ccceeeecccCCCCCcchh--ccceeeeeeeeeeCCCC--CccceeeeccchhccccccccCccchhhhc Confidence 9999854 5666544 799999998 46788889988888877 6799999999999999999997 3345 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) +.+.+.....+++++.|||||+|||||||+|.+++++|||+|+|++++++|+|||++|||+|+||+|+|+||++++++.| T Consensus 229 ~~~~~~~~~~d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl~~~~p 308 (563) T protein:vir:74 229 RKEQVRSAQHDEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQLEGMETLAYALNQSLTDEDATIVFQGLGMYVTNASAP 308 (563) T ss_pred ccchhhhhhhhchhhhccccccCccEEEcCCCCCcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEeccccc Confidence 55555555667788999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cC-CCCcccceecCCCeeEecCCC---CceEEeccccChHHHHHHHHHHHH-HHHHhhcCchhhcccccccccccHHHHH Q lcl|Aclame:pro 308 RD-SRGNMVPWTISPLGMVEHGQN---NKIYRVNGVASLEPSQTHMNKAEE-AMQQTKGIPDIAVGVVDAAVAESGIALD 382 (527) Q Consensus 308 ~d-~~G~~~p~~v~pg~~~el~~~---~k~~~ld~~~~la~~~~~~d~L~~-~l~~vs~tP~va~G~~d~s~a~SG~ALq 382 (527) +| .+|++++|+|+||+||||+++ ++|+.|++++||+++++||++|.+ .||++|+||++|||+||+|+++||+||+ T Consensus 309 ~d~~~g~~~~w~vgpG~i~El~~~~~~g~l~~v~g~~~l~~~q~Hm~~l~eral~~~s~tPavA~G~vD~~~~~SGiALe 388 (563) T protein:vir:74 309 VDPNTGELTDWNIGPMQIVEIAGNRNDNYFERVSGVQDVSPFQDHMKWIDEKGIAEGSGTPEVAIGRVDVTSAESGISLE 388 (563) T ss_pred cccccccccccccCCceeEeccCCccccceeeecchhhhHHHHHHHHHHHHHHHHhhccCcceeecccccccccchhhhh Confidence 99 599999999999999999977 779999999999999999999998 8899999999999999999999999999 Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------hcccccccceeEEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 383 LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEG----------VGIDDADKKLTVTITFRDPKPVNNEKRFAQLL 452 (527) Q Consensus 383 l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~----------v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v 452 (527) ++|+||+|+|++||+.+.++|.|++++++.+||++|++ +......+.+.|+|+|++++|+|+++++++++ T Consensus 389 L~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~g~~~~~~g~~~~~~~~~v~ivf~p~~P~d~~~vv~~~~ 468 (563) T protein:vir:74 389 LQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQEQDGSRPFASADLLNECSVVCIFADPMPVNKTQVTQDTL 468 (563) T ss_pred hhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhcccccccccccCCceEEEEEeCCCCCccHHHHHHHHH Confidence 99999999999999999999999999999999999998 55556667888999999999999999999999 Q ss_pred HHHhcCCccHHHHHHHHHHhcCCCCch-HHHHH--HHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 453 ELWEAGLIPAKKLTEELSKIMGFELTE-EDFRQ--ATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 453 ~l~~aGlls~~ta~~~L~~~g~~~~~e-~~~~~--~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +|++|||||++|||+||.++|| .||+ ++..+ ..++|..+..++|.+.||.|+++++|+|+||+++|+|+||.-- T Consensus 469 tl~~aGiiSretAv~~L~~~g~-~~pdae~e~~~ie~~~i~~~~~a~a~ad~~~~~~a~~~~g~~~~~~dd~g~p~~~ 545 (563) T protein:vir:74 469 LLQQAHLILRKMAVAKLRSIGW-EYPEVDDQGNALTDDDIADMLLAEAEADASLGLSAMDNGGAGEQQFDDQGNPIDQ 545 (563) T ss_pred HHHHcCchhHHHHHHHHHhCCC-CCCcHHHHHhhcCHHHHHHHHHHHhhccCcccceecccCCCCcccccccCCchhH Confidence 9999999999999999999976 5555 33333 3445555556888899999999999999999999999765321 No 4 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=2.1e-59 Score=342.30 Aligned_cols=427 Identities=13% Similarity=0.084 Sum_probs=302.9 Q ss_pred CCChHHHHHHHHHHHHHHHhcCChhheEee-ecCCcccccccccCCchhHHHHhhhhhhccCcccccc---CcchhHHHH Q lcl|Aclame:pro 24 AVTDFDKARLASYRLYEDMYLTNTSDYQVI-LRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFS---KKDAKVDDA 99 (527) Q Consensus 24 ~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i-~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~---~~~~~v~~~ 99 (527) -|......|+.+|+.+.+||+|++..+..- .+-.....-.++..+-+++||++.++|| +|.+-.++ .+.++..+. T Consensus 1 ~~~~~~~~~~~r~~~l~~yy~g~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l-~g~~~~~~~~~~~~~~~~~~ 79 (440) T protein:vir:95 1 MLAAFLGSQKQRLAILASYAQGDNFSILSGHRRLDDEKADYRVRHKWGGYISSFATGYV-IGNPVSIGVMEGGSADQLST 79 (440) T ss_pred ChhhHHHHHHHHHHHHHHHhccCCcccccccccccccCCcceeecchHHHHHHhhhhhe-eccCceEeeCCCccHHHHHH Confidence 677888899999999999999997765332 2122222224567788999999999998 55444433 234567778 Q ss_pred HHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCc Q lcl|Aclame:pro 100 IRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSE 179 (527) Q Consensus 100 lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~ 179 (527) |.+|+++++|+.++.+++|++++.|+|+.++++|. ++ +|.|+.++|.+.||++|+...++++.. +..|..++.. T Consensus 80 l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~-~~---~~~i~~~~p~~~~~~~d~~~~~~~~~~--i~~~~~~~~~ 153 (440) T protein:vir:95 80 IKDIEWQNDINALNSDLAFDASVYGRAYEYHFRDK-DK---VDRVVLISPLEMFVIRDLTVEQNIIAA--VHLPIYADKV 153 (440) T ss_pred HHHHHHhcCHhHHHHHHHHHHhhcCeEEEEEEecC-CC---ceEEEEEcccceEEEEcCCCCCceEEE--EEEEEecCce Confidence 89999999999999999999999999999998874 33 788999999999999999877766554 3335443321 Q ss_pred cceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCC Q lcl|Aclame:pro 180 KKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGH 259 (527) Q Consensus 180 ~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~ 259 (527) . ...|.++. + .+|...+ .. ......++..|+|+++||||+|+|. T Consensus 154 ~-----------~~vyt~~~-------~----~~~~~~~--~~------------~~~~~~~~~~~~~~g~vPvv~~~n~ 197 (440) T protein:vir:95 154 N-----------MTVYTKDK-------V----ITYKPYS--NN------------SVRLVVDDVKKHSYNDVPVVEWWNN 197 (440) T ss_pred E-----------EEEEeCCe-------E----EEEEEec--CC------------ccceeecceeeccCceeeEEEeeCC Confidence 1 11111110 1 0111100 00 0011234567999999999999994 Q ss_pred CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC-cCCCCcccceecCCCeeE--------ecCCC Q lcl|Aclame:pro 260 PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP-RDSRGNMVPWTISPLGMV--------EHGQN 330 (527) Q Consensus 260 ~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~-~d~~G~~~p~~v~pg~~~--------el~~~ 330 (527) .+|.|+++++++|+|++|+++|+.+..++++++|+++++|... .+.+++-...-...++++ ..+++ T Consensus 198 -----~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (440) T protein:vir:95 198 -----RFRMGDYESEISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTT 272 (440) T ss_pred -----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCCccchhhhhhccceecccccccccCCCC Confidence 4799999999999999999999999999999999999988542 222222111111122222 24667 Q ss_pred CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 331 NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNL 410 (527) Q Consensus 331 ~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~l 410 (527) +.++.|....+++++++|+++|.+.|+.+|++|.+.++.+ ++++||.||+..|++|..|+++||..|+.+|.|+++ + T Consensus 273 ~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~-l 349 (440) T protein:vir:95 273 ADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRF--NSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYE-L 349 (440) T ss_pred cceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H Confidence 7888888777899999999999999999999999999855 356799999999999999999999999999999875 4 Q ss_pred HHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHH Q lcl|Aclame:pro 411 VTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKK 490 (527) Q Consensus 411 i~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a 490 (527) +..++.. ..........++|+|.+.+|+|..++++.+++| +|++|.+|++++| ++ .+ .+++.+++. T Consensus 350 i~~~~~~----~~~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl--~g~iS~et~~~~l---~~----~d-~~~E~~ri~ 415 (440) T protein:vir:95 350 ISNIHKA----INGPVIEANKLTFTFHPNIPQDVWTEIKAYIEA--GGEISQETLMENA---SF----TD-YKTEHSRIL 415 (440) T ss_pred HHHHHhh----cCCcccccccceEEeCCCCCCCHHHHHHHHHHH--hccCcHHHHHHhC---CC----CC-cHHHHHHHH Confidence 5555432 222333455688999999999999999999888 6899999999987 22 22 123344444 Q ss_pred HHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 491 TQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 491 ~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) ++ .+.+........+..|+|..|.| T Consensus 416 ~E--~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 416 KQ--GGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred HH--HHHhhhhHHhhccCCCCCCcCCC Confidence 32 22222222222223455555555 No 5 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=6.5e-58 Score=334.12 Aligned_cols=461 Identities=15% Similarity=0.133 Sum_probs=316.4 Q ss_pred CCCChhhhhhhhHHhhccc--CCCCCCCh-HHHHHHHHHHHHHHHhcCChhheEee--ecCCccc------ccccccCCc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEA--NFPNAVTD-FDKARLASYRLYEDMYLTNTSDYQVI--LRGGDEG------DQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~--~~~~~v~~-~d~~Rl~aY~~~~~~y~~~~~~~~~i--~~g~d~~------~~~~~~~p~ 69 (527) ||-+-=.|.. .+.. .+...|.. ..+.|+..|+.+.+||.|++.-+..- ..++... ...++-.|- T Consensus 7 ~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~ 81 (479) T protein:vir:79 7 SETDLIKVQL-----KKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNY 81 (479) T ss_pred cccceEeecc-----ccCChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCcccccccccccccccccccccCcceeecch Confidence 4332211111 1110 01112222 34568899999999999986433211 1111100 001233555 Q ss_pred hhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) +++||++.++|| +|.+..+++.++++++.|..|.+ ++++.++..+.+.+.+.|+++.++++|. ++ ++.|+.+|| T Consensus 82 ~~~Ivd~~~~~l-~g~p~~~~~~~~~~~~~~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~---~~~i~~~~p 155 (479) T protein:vir:79 82 HKLLVDQKVGYS-VGNPIVFNADDDNLTKLLNDLLG-EEFDDTITELYLNASNKGVEWLHPYINR-KG---EFKYVIIPA 155 (479) T ss_pred HHHHHHHHHhhh-hcCCceeccCCHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEeCC-CC---ceEEEEEcc Confidence 899999999999 78888888999999999999986 7899999999999999999999998874 33 799999999 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCcc-ceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEK-KNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~-~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) .++||++|+...++++++... |+..+... ...++. .+.++ .|.+- .+.-++|......... T Consensus 156 ~~~~~v~d~~~~~~~~~~ir~--y~~~~~~~~~~~~~e-------~y~~~-------~i~~~--~~~~~~~~~~~~~~~~ 217 (479) T protein:vir:79 156 EEAIPIWDSKRQRELVAFIRF--YYIEDIDGNKIKRVE-------YYTEN-------DITYF--IERGNSFIQEFLYDEY 217 (479) T ss_pred ceeEEEEeCCCCCceEEEEEE--EEEeecCCceEEEEE-------EEeCC-------cEEEE--EecCCccccccccccc Confidence 999999998877777765333 33322211 111111 11110 00000 0000011000000000 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) ............+...+++++.||||+|+|. .+|.|+++++++|+|++|.++|+.+.+++++++|+++++|.... T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn-----~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~ 292 (479) T protein:vir:79 218 GKMTDIQEGHFRINNKEQGWGKVPFIPFKNN-----EKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEYPGT 292 (479) T ss_pred ccccccccccccccccccCCCcccEEEecCC-----CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcc Confidence 0000111123345678999999999999995 47999999999999999999999999999999999999997543 Q ss_pred CCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccH Q lcl|Aclame:pro 309 DSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAI 388 (527) Q Consensus 309 d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PL 388 (527) +..... ..+..+.++++++++++..+....+.+++++|+++|.+.|+..|.+|.+.++.. +..||.||++.+++| T Consensus 293 ~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~---gn~Sg~Ai~~~~~~l 367 (479) T protein:vir:79 293 SLQEFI--DNIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNT---GDKSGVALKFLYSLL 367 (479) T ss_pred ccccch--hhhhhccceecCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCccccccccc---cchhHHHHHHHHHHH Confidence 322221 224567788999999999988877999999999999999999999999988743 346999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH Q lcl|Aclame:pro 389 LSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEE 468 (527) Q Consensus 389 lakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~ 468 (527) .+|+.+|+..|+.++.|+++ ++..++ ++..........++|+|.+.+|+|.+++++.+++| +|++|.+|++++ T Consensus 368 ~~k~~~~~~~~~~~l~~~~~-li~~~~----~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~ 440 (479) T protein:vir:79 368 DLKCSKTEKKFKKAIRELLW-FVCEYL----KISGNKSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSN 440 (479) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHH----hccCCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHh Confidence 99999999999999998874 555554 33333344456688999999999999999998887 599999999997 Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 469 L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) | +-.++.+++.+|+++.........+. ....++|++|++ T Consensus 441 l-------~~v~d~~~E~~ri~~E~~~~~~~~~~---~~~~~~~~~~e~ 479 (479) T protein:vir:79 441 H-------PWVEDVNDELERLKKQEDTQKEYDDL---IPNNQDGVIDET 479 (479) T ss_pred C-------CCCCCHHHHHHHHHHHHHHHHHHHhc---cCcccCCCcCcC Confidence 6 23456677777777643322222222 223444555555 No 6 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=4.1e-58 Score=335.20 Aligned_cols=458 Identities=11% Similarity=0.081 Sum_probs=320.3 Q ss_pred CCCChhhhhhhhHHhhcccCC----CCCCChHHHHHHHHHHHHHHHhcCChhheEeeecC---Cccccc---ccccCCch Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANF----PNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRG---GDEGDQ---RPIYVPNG 70 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~----~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g---~d~~~~---~~~~~p~~ 70 (527) =|.++.+=+-...++.-.... ....-..++.|+.+|+.+.+||+|++.-+....+- .+.... .++-.|-+ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~ 85 (474) T protein:vir:96 6 WPNEKPYHERVVEQIKPKYETQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDWRMFTNYH 85 (474) T ss_pred cCCCchhhhhHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhcccccccccccchhcccchH Confidence 344554443333333221110 01122355778999999999999996433322221 111111 13556789 Q ss_pred hHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 71 ~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) ++||++.++|| +|.+..+++++++.++.|..|++ +++..++.++.+.+.+.|+++.++++|. ++ ++.|+.++|. T Consensus 86 ~~Ivd~~~~~l-~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~y~d~-~~---~~~i~~~~p~ 159 (474) T protein:vir:96 86 QNLVDQKVAYA-VANPVTFSSDDDKSLKTIQEVLN-HKWDDKLVDILTAASNKGIEWLQPYIDE-NG---EFKTFRVPAE 159 (474) T ss_pred HHHHHhhhhhh-cccCceeecCchHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeeEEEEEecC-CC---ceEEEEEccc Confidence 99999999999 88888889999999999999986 7889999999999999999998888874 33 7889999999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) ++||+++++..+.++++.. .|+.............++.+ +...++.. .... .. T Consensus 160 ~~~~v~d~~~~~~~~~~vr--~~~~~~~~~~~~yt~~~v~~--~~~~~~~~-------~~~~----------------~~ 212 (474) T protein:vir:96 160 QAIPIWTNKERDTLKAFIR--YYRLDGAERVEYWTDSDVTY--YEYQDGIL-------IPDY----------------YH 212 (474) T ss_pred ceEEEEcCCCCCceEEEEE--EEeecCceEEEEEeCCeEEE--EEecCCce-------eecc----------------cc Confidence 9999999887777766633 35543332222211111111 00011100 0000 00 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS 310 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~ 310 (527) .......+......|++++.||||+|+|. ..|.|+++++++|+|++|+++|+.+..+++++.|+++++|....+. T Consensus 213 ~~~~~~~~~~~~~~~~~~g~iPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~ 287 (474) T protein:vir:96 213 GEEHIQSHYYVGNKRVSWGRVPFIPFKNN-----PQEMSDLFMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYEGQDL 287 (474) T ss_pred ccccccccccccccccCCCceeEEEeccC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccc Confidence 01112233445567999999999999995 4699999999999999999999999999999999999999865443 Q ss_pred CCcccceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHH Q lcl|Aclame:pro 311 RGNMVPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAIL 389 (527) Q Consensus 311 ~G~~~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLl 389 (527) .+. ......+.+|.++ ++++++.|....+++++++|+++|.+.|+..|++|.+.++.. ++++||.||++.|++|. T Consensus 288 ~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~~l~ 363 (474) T protein:vir:96 288 DEF--MRNLKYYKAINVDGDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQDKF--GNSPSGIALKFMYSNLD 363 (474) T ss_pred cch--hhhhhcCceEEecCCCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCcccccccc--ccccHHHHHHHHHHHHH Confidence 222 2345667888876 467899998777999999999999999999999999998754 46689999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHH Q lcl|Aclame:pro 390 SSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEEL 469 (527) Q Consensus 390 akv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L 469 (527) +|+.+|+..|..+|.|+++-++. ++ +. ......+.|+|.+.+|+|..+.++. +.++|++|.+|++++| T Consensus 364 ~k~~~k~~~~~~~l~~~~~~i~~-~~----~~----~~~~~~i~i~f~~~~p~~~~e~~~~---~~~ag~iS~et~~~~~ 431 (474) T protein:vir:96 364 LKANKLKNKTLTALQELLQYIID-FY----KL----NIKVQDVEITFNFNVMVNELEQSQI---GVQSQYLSKETVVTNH 431 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-Hh----CC----CcccceeeEEeccCCCcCHHHHHHH---HHhcCCCchHHHHHhC Confidence 99999999999999998754432 21 22 1233457889999999998887764 5678999999999976 Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 470 SKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 470 ~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +..++.+++.+|+++.. ++..+........ .+...++|+.+|+ T Consensus 432 -------~~v~d~~~E~~ri~~E~---~e~~~~~~~~~~~--~~~~~~d~~~e~~ 474 (474) T protein:vir:96 432 -------PWVDDPVAELERIEQDN---IDFNKQLPPLEGD--ANGRAQDNESETN 474 (474) T ss_pred -------CCCCCHHHHHHHHHHHH---HHHHhcccccccc--cccccCCCcccCC Confidence 33456777777876542 2333333322221 1223444666666 No 7 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=4.1e-58 Score=335.22 Aligned_cols=470 Identities=12% Similarity=0.084 Sum_probs=318.2 Q ss_pred CCCChhhh-----hhhhHHhhcccC-------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCc-ccccccccC Q lcl|Aclame:pro 1 MGQDKRQY-----GSTQQLRAGEAN-------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD-EGDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy-----~~~~~~~~~~~~-------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d-~~~~~~~~~ 67 (527) .-.|..+| ..--.|....-+ +...|..+...|+.+|+.|.+||.|.+..+....+..+ .+...++.. T Consensus 13 ~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~ 92 (511) T protein:vir:99 13 LRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAH 92 (511) T ss_pred hhhhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccccCcceeec Confidence 22222222 211112111111 12334445667888999999999999877654432222 222345667 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+..+++.++++++.|..|+++++++.++.++.+++.+.|+|+.++++|. . .+|.++.+ T Consensus 93 n~~k~Iv~~~~~yl-~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~de-d---~~~~i~~~ 167 (511) T protein:vir:99 93 DYASYISDFINGYF-LGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQ-D---DETRLYKS 167 (511) T ss_pred chHHHHHHHHHhhh-cccCceeecCchHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCC-C---CceEEEEE Confidence 88999999999999 8888888999999999999999999999999999999999999999999884 2 37889999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|.+.||++++...++++..--.|.....++...... .|...+.++ .| .+|.-.++.. + T Consensus 168 ~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~~~~~-----~~~~vyt~~-------~i----~~~~~~~~~~-----~ 226 (511) T protein:vir:99 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEV-----FTVDLFTSH-------GV----YRYLTSRTNG-----L 226 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeecccCccceE-----EEEEEEeCC-------cE----EEEEecCCcc-----c Confidence 9999999999887666655422332223332211110 111111111 11 0111111100 0 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) .....++...++|++.||||+|+|. .+|.|+++++++|+|++|+++|+.+..+++++.|++++.|... T Consensus 227 -------~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~ 294 (511) T protein:vir:99 227 -------KLTPRENGFESHSFERMPITEFSNN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLN 294 (511) T ss_pred -------cccccccccccCCCCccceEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCcc Confidence 0012234567999999999999995 4799999999999999999999999999999999999988554 Q ss_pred cCCCC-------ccc---ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccccc Q lcl|Aclame:pro 308 RDSRG-------NMV---PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) Q Consensus 308 ~d~~G-------~~~---p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~S 377 (527) .+..+ .+. +.....+.....++++++..|....+.+++++|+++|.+.||..|.+|.+.++.+. +.+| T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~--gn~S 372 (511) T protein:vir:99 295 LDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS--GTQS 372 (511) T ss_pred cCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc--ccch Confidence 33211 110 11112233334566788888887678999999999999999999999999988553 5679 Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 378 GIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 378 G~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) |.||+..|++|..|+.+|+..|..+|+|++ +++..++....... .......++|+|.+.+|+|.+++++.+++| + T Consensus 373 g~Alk~~~~~l~~ka~~k~~~~~~~l~~~~-~li~~~~~~~~~~~--~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl--~ 447 (511) T protein:vir:99 373 GEAMKYKLFGLEQRTKTKEGLFTKGLRRRA-KLLETILKNTRSID--VSKDFNTVRYVYNRNLPKSLIEELKAYIDS--G 447 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcc--cccccccceEEeCCCCCcCHHHHHHHHHHH--h Confidence 999999999999999999999999999987 45555553322221 122334568899999999999999999888 4 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH-hcCcccccc-----cccCCCCcccccccC Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAE-AADPFGAQM-----AAEQGIPDEEDDQAL 522 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~a-a~d~~g~~~-----~~d~g~~d~~~~~~~ 522 (527) |++|.+|++++| +..++.+++.+|+++...++.. ....++... ..+++-++.++|+.+ T Consensus 448 GiiS~et~l~~l-------~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 448 GKISQTTLMSLF-------SFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred ccCCHHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcCcccccC Confidence 999999999976 3345566667777654332221 111212111 122222233444444 No 8 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=1.2e-57 Score=332.60 Aligned_cols=452 Identities=12% Similarity=0.114 Sum_probs=319.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCCh--------HHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTD--------FDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEK 72 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~--------~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k 72 (527) +-+++.+|.....|+-..+. ++.+. +..+++..|+.|.+||.|++.-++.-.+... .-.++-.+-+++ T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~--~~~ki~~n~~~~ 79 (470) T protein:vir:99 4 INYGRDKVTGNSSFIFPKGE--KLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTAPEKETG--ADNRIVVNSAKY 79 (470) T ss_pred ccCCcccccCCceEEeCCCC--CcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccCcccccC--CcceeecchHHH Confidence 78999999999998887666 44333 2345567899999999998643332221111 113445677999 Q ss_pred HHHhhhhhhccCccccccCcc-hhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccce Q lcl|Aclame:pro 73 LIEAKMRFLGQGLKWEFSKKD-AKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPST 151 (527) Q Consensus 73 ~v~~~~~~Lg~~~~~~i~~~~-~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~ 151 (527) ||++.++|| +|.+-.+++++ .+.++.|..|++++++..++.++.+.+.+.|.++.++++|. .+ ++.|+.++|.+ T Consensus 80 Ivd~~~~~l-~g~p~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-dg---~~~i~~~~p~~ 154 (470) T protein:vir:99 80 VVDVYNGYF-CGIEPKLALLNDSSKIDEIARWNRQENFFDTINEISKQCDIFGRSIASIYQGE-DA---RPHLMYSSPNH 154 (470) T ss_pred HHHHHhhhh-ccCCeeEeeCCchhHHHHHHHHHHhcCHhHHHHHHHHHHHhcCeeEEEEEeCC-CC---eEEEEEEccce Confidence 999999998 76666666654 45678888999999999999999999999999988888774 23 78899999999 Q ss_pred EEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccc Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDD 231 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~ 231 (527) .||++|+.....+++. +..|...++.. +. .|...+.++ ..|+....+. T Consensus 155 ~~~i~d~~~~~~~~~~--vr~~~~~~~~~---~~----~~~~~~~~~-------------~~~~~~~~~~---------- 202 (470) T protein:vir:99 155 AFIIYDDTVQRQPLAF--VHYQIDNSNNW---TD----AYGVIQYAD-------------KFYKFKGYDI---------- 202 (470) T ss_pred eEEEEcCCCCcceEEE--EEEEEEecCCe---eE----EEEEEEecC-------------eEEEEEeccc---------- Confidence 9999998766555443 33355443322 11 111111110 0111100000 Q ss_pred eeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc-CC Q lcl|Aclame:pro 232 IKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR-DS 310 (527) Q Consensus 232 ~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~-d~ 310 (527) ......++.-++|++.||||+|+|. .+|.|+++++++|+|++|+++|+++.+++++++|++++.|.... +. T Consensus 203 ---~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~g~~~~~~~ 274 (470) T protein:vir:99 203 ---EEDTNAAGYAINPYGLVPAVEFFEN-----EERQGIFDSIKTLINALDKVISQKANQVEYFDNAYMYMIGFKLPEDD 274 (470) T ss_pred ---ccccccccccccCCCccceEeecCC-----CCCCcchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCccccc Confidence 0011223456899999999999985 37999999999999999999999999999999999999997643 45 Q ss_pred CCcccceecCCCeeEec-----CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHh Q lcl|Aclame:pro 311 RGNMVPWTISPLGMVEH-----GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKL 385 (527) Q Consensus 311 ~G~~~p~~v~pg~~~el-----~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~ 385 (527) +|+.. .......+|.+ +++++++.|....+.+.+++|++.|.+.|+..|++|.+.++.+ ++.+||.||+..+ T Consensus 275 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~n~Sg~Ai~~~~ 351 (470) T protein:vir:99 275 EGNPK-FDFKNNRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMAMVPNIQDKNF--AGNSSGVALQYKL 351 (470) T ss_pred ccchh-hhhhhcceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCCcccccccc--ccCchHHHHHHHH Confidence 67754 23445566655 4578888898767899999999999999999999999998855 3557999999999 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHH Q lcl|Aclame:pro 386 SAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKL 465 (527) Q Consensus 386 ~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta 465 (527) ++|..|+++|+..|+.+|.|+++- +..++ +...........++|+|.+.+|+|..+.++.++++. |++|.+|+ T Consensus 352 ~~l~~k~~~~~~~~~~~l~~~~~l-i~~~~----~~~~~~~~~~~~i~v~f~~~~p~~~~e~a~~~~kl~--giis~et~ 424 (470) T protein:vir:99 352 FAMKNKADSKERKFDKSLMQLYRI-VLATL----FNNKQDQELWSELDFKFTRNLPEDMASAIDNAKNAE--GIVSKKTQ 424 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hccCCcccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHH Confidence 999999999999999999988753 33333 333334445567889999999999999999998874 89999999 Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 466 TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 466 ~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +++| ++ . +.+++.+|++++..+..+..+...-.....++.|++++| T Consensus 425 l~~l---~~----v-d~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 425 LGMI---PD----I-EPDAEMKQIAKEKADAIKQTQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred HHhC---CC----C-CHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCccCC Confidence 9976 33 2 345566666654332222222111111122222333333 No 9 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=2.1e-57 Score=331.28 Aligned_cols=458 Identities=16% Similarity=0.147 Sum_probs=316.7 Q ss_pred CCCC--hhhhhhhhHHhhcccC-------CCCCCChHHHHHHHHHHHHHHHhcCChhheEee---ecCCcccccccccCC Q lcl|Aclame:pro 1 MGQD--KRQYGSTQQLRAGEAN-------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI---LRGGDEGDQRPIYVP 68 (527) Q Consensus 1 m~~~--~~qy~~~~~~~~~~~~-------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i---~~g~d~~~~~~~~~p 68 (527) |-+. +.|+-..+.|+-...+ +-+.|..+...|+.+|+.+.+||.|++..+..- .+....+-..++..| T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ki~~n 85 (481) T protein:vir:10 6 INNINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTDILAGERRLQKYGDKADHRAVHN 85 (481) T ss_pred eehhchhcccccCceeeeecchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCccccccccccccceeecc Confidence 2221 1222222222221111 011233445678999999999999986553211 111111112345677 Q ss_pred chhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) -+++||++.++|| +|.+..+++.+++.++.|..|+++++++.++.++.+++.+.|.++.+++.|. .+ +|.|+.++ T Consensus 86 ~~~~ivd~~~~~l-~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~~~~d~-dg---~~~i~~~~ 160 (481) T protein:vir:10 86 YAKYVSRFIVGYL-TGNPITITHQDNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDF-ED---RDTFKVLD 160 (481) T ss_pred hHHHHHHHHHhhh-ccCCceEecCChhHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCC-CC---eEEEEEEc Confidence 8999999999999 8888888999999999999999999999999999999999999999998874 23 78899999 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |.+.||++|+...+++++. +..|...+..... +.+.-.| .+ ..|. +|+.++ . T Consensus 161 p~~~~~v~d~~~~~~~~~~--i~~~~~~~~~~~~--~~~~~~y----~~-------~~i~----~~~~~~-----~---- 212 (481) T protein:vir:10 161 PKSTFVVYDQTLDKKVVAG--VRYFEKQDKDKVP--VQHVEVY----TT-------DKIY----YIEIKG-----G---- 212 (481) T ss_pred ccceEEEEcCCCCCceEEE--EEEEEEeeCCCce--EEEEEEE----ec-------CeEE----EEEecC-----C---- Confidence 9999999998877776665 2224433322211 1111111 11 1110 111100 0 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) .-..+++.|++++.||||+|+|. .+|+|+++++++|+|++|+++|+++.+++++++|++++.|.... T Consensus 213 --------~~~~~~~~~~~~g~vPvv~~~n~-----~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~ 279 (481) T protein:vir:10 213 --------TYHRVEEVEHYYNDVPIIEYLND-----QFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDL 279 (481) T ss_pred --------ceeecccccccCCceeEEEeecC-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCC Confidence 01124567999999999999985 47999999999999999999999999999999999999886543 Q ss_pred C-CCCcccc----eecCCCeeEe-cCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHH Q lcl|Aclame:pro 309 D-SRGNMVP----WTISPLGMVE-HGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALD 382 (527) Q Consensus 309 d-~~G~~~p----~~v~pg~~~e-l~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALq 382 (527) + .+|+... +.+.++..+. .++++.+..+....+.+.+++|++.|.+.|+..|++|.+.+|.+. +.+||.||+ T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~--~n~Sg~Al~ 357 (481) T protein:vir:10 280 DSEDAKAFRDANMIHLEPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQFS--GVQSGESMK 357 (481) T ss_pred CccchhhhhhccceeccccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc--cccHHHHHH Confidence 3 3444321 1122222222 234567777776568899999999999999999999999998553 557999999 Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccH Q lcl|Aclame:pro 383 LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPA 462 (527) Q Consensus 383 l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~ 462 (527) ..+++|.+|+++++..|+.+|.|+++ ++.+++ ++..........++|+|.+++|+|.++.++.+++| +|++|. T Consensus 358 ~~~~~l~~k~~~~~~~~~~~l~~~~~-li~~~~----~~~~~~~~~~~~i~v~f~~~~~~~~~~~a~~~~kl--~g~is~ 430 (481) T protein:vir:10 358 YKLFGLEQVRAIKERLFKKGLMKRYK-LLLNNV----NLTGLKQHNYAELTITFTPNLPKSMMESINAFNAL--SGGVSE 430 (481) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----hccCCCccccceeeEEeCCCCCcCHHHHHHHHHHH--hccCCh Confidence 99999999999999999999999874 444443 44444445566789999999999999999999887 599999 Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 463 KKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 463 ~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) +|++++| +-.++.+++.+|++++..++....+..+...+++++ ++.||++| T Consensus 431 et~~~~l-------~~i~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~--~~~dd~~g 481 (481) T protein:vir:10 431 STRLSLL-------DFIDNPKEELEKMQEEEAQREKQADKRGYGEAFENH--LNVDDSNG 481 (481) T ss_pred HHHHHhC-------CCCCCHHHHHHHHHHHHHHHHhhhhhccCCccCCCC--CCCCCCCC Confidence 9999976 224556777777766544444445554433332222 22244444 No 10 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=1.4e-56 Score=326.72 Aligned_cols=478 Identities=10% Similarity=0.076 Sum_probs=320.7 Q ss_pred CCCChhhhhhhhHHhhcccCC-CC----CCCh-HHHHHHHHHHHHHHHhcCChhheEeeecCCccccc---------ccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANF-PN----AVTD-FDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ---------RPI 65 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~-~~----~v~~-~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~---------~~~ 65 (527) -|..+-+-..+..|...-... .. .|.. .++.|...|+.+.+||.|++.-++......+.... .++ T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ri 84 (503) T protein:vir:59 5 YPLGKTHTEELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRT 84 (503) T ss_pred ccCChhhHHhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHHHHhccccchhhccchhccccccccccccccccee Confidence 344444444444443333221 11 1221 23446688999999999986432222111111000 123 Q ss_pred cCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEE Q lcl|Aclame:pro 66 YVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLH 145 (527) Q Consensus 66 ~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~ 145 (527) -.|=+++||++.++|| +|.+..++..++++++.|+.|++ +++..++.++.|.+.+.|.+++++++|. ++ +++|+ T Consensus 85 ~~n~~~~ivd~~~~yl-~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~-dg---~~~i~ 158 (503) T protein:vir:59 85 SHAWHKLFVDQKTQYL-VGEPVTFTSDNKTLLEYVNELAD-DDFDDILNETVKNMSNKGIEYWHPFVDE-EG---EFDYV 158 (503) T ss_pred ecchHHHHHHHHHhhh-hcCCeeeccCcHHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEeecC-CC---ceEEE Confidence 3556899999999999 77787888999999999999986 8899999999999999999999999985 33 79999 Q ss_pred EEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccc Q lcl|Aclame:pro 146 EVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPES 225 (527) Q Consensus 146 ~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~ 225 (527) .++|.++||++++...+++.++... |...+..+... ++...+.+ +.|.+ ..+.-++|..... T Consensus 159 ~~~p~~~~~i~d~~~~~~~~~~ir~--~~~~~~~~~~~------~~~evy~~-------~~i~~--~~~~~~~~~~~~~- 220 (503) T protein:vir:59 159 IFPAEEMIVVYKDNTRRDILFALRY--YSYKGIMGEET------QKAELYTD-------THVYY--YEKIDGVYQMDYS- 220 (503) T ss_pred EEccceeEEEEeCCCCCceEEEEEE--EEEecCCCceE------EEEEEEeC-------CcEEE--EEEcCCccccccc- Confidence 9999999999999877777765323 44333222111 11111111 11111 0111111211100 Q ss_pred cccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccC Q lcl|Aclame:pro 226 PLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSA 305 (527) Q Consensus 226 ~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~ 305 (527) + ..........+...+++++.||||.|+|. .+|.|+++++++|+|++|+++|+.+.++++++.|+++++|. T Consensus 221 -~---~~~~~~~~~~~~~~~~~~~~vPiv~~~nn-----~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~ 291 (503) T protein:vir:59 221 -Y---GENNPRPHMTKGGQAIGWGRVPIIPFKNN-----EEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNY 291 (503) T ss_pred -c---cccccccceeecceeccCCccceEEecCC-----CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecC Confidence 0 00111122335567899999999999985 37999999999999999999999999999999999999987 Q ss_pred CCcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHh Q lcl|Aclame:pro 306 PPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKL 385 (527) Q Consensus 306 ~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~ 385 (527) ...+. ++. ...+....++.+++++++..+....+.++++.|++.|.+.|+..|.+|.+.++.. ++..||.||+..+ T Consensus 292 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~~~Sg~Ai~~~~ 367 (503) T protein:vir:59 292 DGENP-KEF-TANLRYHSVIKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETI--GGGATGPALENLY 367 (503) T ss_pred Ccccc-chh-hhhhhcccceeccCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccc--cccccHHHHHHHH Confidence 64332 111 1235667788999999998888777999999999999999999999999988754 3567999999999 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-ccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHH Q lcl|Aclame:pro 386 SAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGID-DADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKK 464 (527) Q Consensus 386 ~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~-~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~t 464 (527) ++|++|+++++..|..+|.|+++- +..++ .+... .......++|+|.+++|+|.++.++.+++|+++|++|.+| T Consensus 368 ~~l~~k~~~~~~~~~~~l~~~~~~-i~~~~----~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et 442 (503) T protein:vir:59 368 ALLDLKANMAERKIRAGLRLFFWF-FAEYL----RNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKET 442 (503) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH----HhccCcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHH Confidence 999999999999999999988754 44443 22222 2223345889999999999999999999999999999999 Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcc-ccccccc-CCCCcccccccCCCCC--C Q lcl|Aclame:pro 465 LTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPF-GAQMAAE-QGIPDEEDDQALNGQP--L 527 (527) Q Consensus 465 a~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~-g~~~~~d-~g~~d~~~~~~~~~~~--~ 527 (527) ++.+| +.+++.+++.+++++...+........ +...+.+ +..++++..+..++.- - T Consensus 443 ~l~~l-------~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 502 (503) T protein:vir:59 443 AVARN-------PFVQDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQV 502 (503) T ss_pred HHHhC-------CCCCCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCCCcccCCCCCCc Confidence 99876 234556667777765333222221111 1111111 1111222212221111 1 No 11 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=8.9e-57 Score=327.88 Aligned_cols=455 Identities=12% Similarity=0.146 Sum_probs=312.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCC-------ChHHHHHHHHHHHHHHHhcCChhheEeeec--CCccccc----ccccC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAV-------TDFDKARLASYRLYEDMYLTNTSDYQVILR--GGDEGDQ----RPIYV 67 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v-------~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~--g~d~~~~----~~~~~ 67 (527) ||=.+. =.++++.-..+ ...+ -.....|+.+|+.+.+||.|++.-+..-.+ +..+.+. .++-. T Consensus 5 ~~~~~~---~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~ 80 (472) T protein:vir:93 5 QPTQTE---IFDAIVRTNNK-PETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMIT 80 (472) T ss_pred CCcchh---hhhceeeecCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhcccccccccccccccc Confidence 332221 11122211111 0011 113456889999999999998643221111 1111111 13446 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) |-+++||++.++|| +|.+-.+++.++++.+.|.+|++ ++++.++.++.+.+.+.|.|+.++++|. ++ +|.|+.+ T Consensus 81 n~~~~ivd~~~~~l-~g~~~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~-d~---~~~i~~~ 154 (472) T protein:vir:93 81 NFHANLVDQKVSYI-VGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE-EG---EFKLFRV 154 (472) T ss_pred chHHHHHHHHhhhh-cccCeeeccCChHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCeEEEEEEECC-CC---ceEEEEE Confidence 77999999999999 88787888899999999999985 7899999999999999999988888774 33 7888999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|.+.||++|+...++++.. +..|...+..........++++-. ... +.+... | T Consensus 155 ~p~~~~~i~d~~~~~~~~~~--ir~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~~~--------~-------- 208 (472) T protein:vir:93 155 PAEQGIPIWTDKEHEELEAF--IRMYKLENETKVEYWDKVTVNYYV--YEN------GSLIPD--------Y-------- 208 (472) T ss_pred cccceEEEEcCCCCCceEEE--EEEEEeecceeEEEEecCeEEEEE--Eec------Ceeeec--------c-------- Confidence 99999999998777777665 333554433221111111111100 000 000000 0 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) .......+++..+++++.||||.|+|. .+|.|+++++++|+|++|+++|+.+.++++++.|+++++|... T Consensus 209 -----~~~~~~~~~~~~~~~~~~vPvv~~~nn-----~~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~~~ 278 (472) T protein:vir:93 209 -----SNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDD 278 (472) T ss_pred -----cccccccccccccCCCCCcceEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCc Confidence 001112234557999999999999995 4899999999999999999999999999999999999998764 Q ss_pred cCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhcc Q lcl|Aclame:pro 308 RDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSA 387 (527) Q Consensus 308 ~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~P 387 (527) .+. ++.. -.++...++++++++.+..+....+.+++++|+++|.+.|+..|++|.+.++.. ++.+||.||++.+++ T Consensus 279 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~~ 354 (472) T protein:vir:93 279 QEL-PEFK-RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF--GSAPSGVALEFLYTN 354 (472) T ss_pred ccc-hhhH-HHHhhccccccCCCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCcccc--ccCchHHHHHHHHHH Confidence 332 1211 124566788899999999888777999999999999999999999999998744 356799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHH Q lcl|Aclame:pro 388 ILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTE 467 (527) Q Consensus 388 Llakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~ 467 (527) |..|+++|+..|+.+|.|+++.+ ..++ +. ......++|+|.+.+|+|..++++.++++ +|++|.+|+++ T Consensus 355 l~~ka~~~~~~~~~~l~~~~~li-~~~~----~~----~~~~~~i~v~f~~~~p~~~~~~~~~~~k~--~giis~et~l~ 423 (472) T protein:vir:93 355 LNLKADKLARKAKVAIQELLWFV-FEHF----DI----KGEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLE 423 (472) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHh----CC----CcccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHH Confidence 99999999999999999987544 3332 21 12344578899999999999999999887 69999999999 Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 468 ELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 468 ~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +| + -.++.+++.+++.+...+.....++. .....|++.++++.++.++- T Consensus 424 ~l---~----~~~d~~~E~~ri~~E~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~e 472 (472) T protein:vir:93 424 NH---P----FVEDLQAELERIEQEQMEYNKQLPNL-DDGGADGAQQQERSNNKESE 472 (472) T ss_pred hC---C----CCCCHHHHHHHHHHHHHHHHHhccCc-CcccCCCCCCCCCCCcccCC Confidence 76 2 24456666666654322222222222 12234444444333333333 No 12 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=1.2e-56 Score=327.22 Aligned_cols=469 Identities=13% Similarity=0.096 Sum_probs=314.7 Q ss_pred CCCChhhhhhhhH-HhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc-ccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQ-LRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG-DQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~-~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~-~~~~~~~p~~~k~v~~~~ 78 (527) +-| +|.++.. .+.-+..+...|..+...|+.+|+.|.+||.|++..+....+..++. ...++-.+-+++||++.+ T Consensus 27 ~~~---~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~ 103 (512) T protein:vir:97 27 VVY---TYDGTESDLLQNINEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFIN 103 (512) T ss_pred ccc---ccCchhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHh Confidence 222 1111111 11111222234445667888999999999999987765443333322 223455688999999999 Q ss_pred hhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecC Q lcl|Aclame:pro 79 RFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDP 158 (527) Q Consensus 79 ~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~ 158 (527) +|| +|.+-.+++.++++++.|.+|+++++++.++.++++.+.+.|.|+.++++|. .+ +|.|+.++|.+.||++|+ T Consensus 104 ~yl-~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~de-d~---~~~i~~~~p~~~~~iyd~ 178 (512) T protein:vir:97 104 GYF-LGNPIQCQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQ-DD---ETRLYKSDAMSTFVIYDN 178 (512) T ss_pred hhh-cccCceeccCChHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEEEEEeCC-CC---ceEEEEEcccceEEEEcC Confidence 999 7778888899999999999999999999999999999999999998888874 33 788899999999999998 Q ss_pred CCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccC Q lcl|Aclame:pro 159 RYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTL 238 (527) Q Consensus 159 d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~ 238 (527) ...++++..--.|.....++..... .. +...+.++. | .+|.-.+ .... .... T Consensus 179 ~~~~~~~~~vr~~~~~~~~~~~~~~--~~---~~~vyt~~~-------i----~~~~~~~-----~~~~-------~~~~ 230 (512) T protein:vir:97 179 TIERNSIAGVRYLRTKPIDKTDEDE--VF---TVDLFTSHG-------V----YRYLTSR-----TNGL-------KLTP 230 (512) T ss_pred CCCCceEEEEEEEEeeeccccccce--EE---EEEEEeCCc-------E----EEEEecC-----CCcc-------cccc Confidence 8777766542232222333221111 01 111111110 0 0111000 0000 0012 Q ss_pred cccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC-CCc---- Q lcl|Aclame:pro 239 TEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS-RGN---- 313 (527) Q Consensus 239 ~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~-~G~---- 313 (527) .+++..|+|++.||||.|+|. .+|.|+++++++|+|++|+++|+.+..++++++|++++.|....+. .++ T Consensus 231 ~~~~~~~~~~g~vPvv~~~nn-----~~~~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~ 305 (512) T protein:vir:97 231 RENGFESHSFERMPITEFSNN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNLDPVEVRKQKE 305 (512) T ss_pred cccccccccCcccceEeecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccCCchhhhhhhh Confidence 335667999999999999985 4799999999999999999999999999999999999988653332 111 Q ss_pred --cc----ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhcc Q lcl|Aclame:pro 314 --MV----PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSA 387 (527) Q Consensus 314 --~~----p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~P 387 (527) .. .....++..+..+.+++++.|....+.+++++|+++|.+.||.+|.+|.+.++.+. +.+||.||+..+++ T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~--gn~Sg~Al~~~~~~ 383 (512) T protein:vir:97 306 ANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS--GTQSGEAMKYKLFG 383 (512) T ss_pred cccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHHHHHHhCCcccCccccc--ccchHHHHHHHHHH Confidence 10 01122223334567788888887679999999999999999999999999998554 55799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHH Q lcl|Aclame:pro 388 ILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTE 467 (527) Q Consensus 388 Llakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~ 467 (527) |..|+.+|+..|+.+|+|++ +++..++........ ......++|+|.+.+|+|.+++++.+++| +|++|.+|+++ T Consensus 384 l~~ka~~k~~~f~~~l~~~~-~li~~~~~~~~~~~~--~~d~~~i~~~f~~~~p~~~~e~~~~~~kl--~giiS~et~~~ 458 (512) T protein:vir:97 384 LEQRTKTKEGLFTKGLRRRA-KLLETILKNTRSIDA--NKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMS 458 (512) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCccc--ccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHH Confidence 99999999999999999987 445555432211111 11223467899999999999999999888 59999999999 Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHh-cCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 468 ELSKIMGFELTEEDFRQATEDKKTQGIAQAEA-ADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 468 ~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa-~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +| + ..++.+++.+|+++...++... ....+... ++..+.+.+++...+.. T Consensus 459 ~l---~----~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 509 (512) T protein:vir:97 459 LF---S----FFQDPELEVKKIEEDEKESIKKAQKGIYKDP---RDINDDEQDDDTKDTVD 509 (512) T ss_pred hC---C----CCCCHHHHHHHHHHHHHHHHHHHhhcccCCC---CCCCCCCCCCCcccccc Confidence 87 2 2345566666666543332222 11222111 11112222222222223 No 13 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=7.4e-57 Score=328.31 Aligned_cols=465 Identities=13% Similarity=0.068 Sum_probs=313.4 Q ss_pred CCCChhhhhhhhHHhhcccCC----CCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANF----PNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~----~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~ 76 (527) |..-..+ .|+..-.++ .+.+-...+.|+.+|+.+.+||.|++.-++.-.++... ...++-.+-+++||++ T Consensus 1 ~~~~~~~-----~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~-~~~ki~~n~~~~Iv~~ 74 (499) T protein:vir:10 1 MAVVIDK-----DLLDDVNEPNIEAINYAIRELQNRKKRLDKLSDYYNGKQEIEKHEFDNATV-EAANVMVNHAKYITDM 74 (499) T ss_pred Cccchhh-----hHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcCCcCcCCC-CcceeecchHHHHHHH Confidence 4432221 222221111 11112356778999999999999997544333322222 1233445668999999 Q ss_pred hhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCC-------------CccceE Q lcl|Aclame:pro 77 KMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKD-------------EGSRLS 143 (527) Q Consensus 77 ~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~-------------~~~r~~ 143 (527) .++|| +|.+..+++.++++++.|.+|+++++++.++.++.+.+.+.|.++.++++|..-. ...++. T Consensus 75 ~~~~l-~g~p~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ 153 (499) T protein:vir:10 75 NVGFM-TGNPVKYVAEKGKNIDDILEVFNQIDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELK 153 (499) T ss_pred Hhhhh-cccCceeecCChhHHHHHHHHHhhcCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceE Confidence 99999 8778888888999999999999999999999999999999999988888874311 122677 Q ss_pred EEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRP 223 (527) Q Consensus 144 i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~ 223 (527) ++.++|.+.||++++....+++..... |...+...-..+ .|...+.+ ..| .+|...+.... T Consensus 154 ~~~v~p~~~~~v~~d~~~~~~~~~i~~--~~~~~~~~~~~~-----~~~~iyt~-------~~i----~~~~~~~~~~~- 214 (499) T protein:vir:10 154 IEVIDPRATVVVCDDTVEHDPLFAVFT--QEKKDLEGNTNG-----YSITVYMP-------QRI----VEYRTKTTMEV- 214 (499) T ss_pred EEEEcccceEEEecCCCCcceEEEEEE--EEEeecCCCceE-----EEEEEEeC-------CeE----EEEEecCCccc- Confidence 899999999999998766665544222 333322211111 11111111 111 11211111000 Q ss_pred cccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEec Q lcl|Aclame:pro 224 ESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATD 303 (527) Q Consensus 224 ~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~ 303 (527) .....++...|++++.||||+|+|. .+|.|+++++++|+|++|+++|+.+.++++++.|+++++ T Consensus 215 -----------~~~~~~~~~~~~~~g~vPvv~~~n~-----~~~~~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~ 278 (499) T protein:vir:10 215 -----------SANDPIVYDGENLFGAVPIIEFRNN-----EERQGDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTF 278 (499) T ss_pred -----------cCcceecccccCCCCccceEEecCC-----CCCCCchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeee Confidence 0112234567999999999999994 579999999999999999999999999999999999999 Q ss_pred cCCCcC-CCCcccceecCCCeeEe--cCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH Q lcl|Aclame:pro 304 SAPPRD-SRGNMVPWTISPLGMVE--HGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) Q Consensus 304 g~~~~d-~~G~~~p~~v~pg~~~e--l~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A 380 (527) |....+ .++. .....+.++. .++++++..|....+.+++++|+++|.+.|+.+|.+|.+.++.+ ++++||.| T Consensus 279 G~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~gn~Sg~A 353 (499) T protein:vir:10 279 GFGLGDDKDDI---QRLKRGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKF--MGNVSGEA 353 (499) T ss_pred cCccccccchh---hhhhhcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhh--cccchHHH Confidence 976433 2222 2245566665 45778888888777999999999999999999999999988754 46689999 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) |++.|++|.+|+.+|+..|..+|.|+++-+ ..++ ... +.......++|+|.+.+|+|..++++.+++| +|++ T Consensus 354 l~~~~~~l~~k~~~k~~~~~~~l~~~~~li-~~~~----~~~-~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~i 425 (499) T protein:vir:10 354 MKFKLFGLENLLSIKQRYFFDGLRRRLKLI-QTIV----NIK-GANDDASGCKISLVANIPSNLSDVVNNVKNA--DGII 425 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----hcc-CCccccccceEEeCCCCCCCHHHHHHHHHHH--hccC Confidence 999999999999999999999999987544 3333 222 2233445678999999999999999999998 7999 Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-HhcCccccccccc---CCC-CcccccccCCCCCC Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQA-EAADPFGAQMAAE---QGI-PDEEDDQALNGQPL 527 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~-aa~d~~g~~~~~d---~g~-~d~~~~~~~~~~~~ 527 (527) |.+|++++| +..++.+++.+|++.+..+.. ....+++....+. ++. ++.+..+-++++.- T Consensus 426 S~et~~~~l-------~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (499) T protein:vir:10 426 PRKYTYSWL-------PDVDNPQDVIDEMNQQDAETIKKNQEALRGQDPDRLELEDKQDDSSENDKEAGSNH 490 (499) T ss_pred ChHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccCCCCCCCcccc Confidence 999999987 234445555666654433221 1122222111111 111 11111111222222 No 14 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=6.4e-57 Score=328.65 Aligned_cols=454 Identities=12% Similarity=0.126 Sum_probs=320.2 Q ss_pred CCCCh-------hhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc----c--cccccC Q lcl|Aclame:pro 1 MGQDK-------RQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG----D--QRPIYV 67 (527) Q Consensus 1 m~~~~-------~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~----~--~~~~~~ 67 (527) ||+++ .||..-+.... .+....-.....|+.+|+.+.+||.|++.-++...+-.... . -.++-. T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~ 83 (474) T protein:vir:97 7 MPWDKPYGEEVVEQLKPQFETQE---EMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWRITT 83 (474) T ss_pred ccCCCchhhHHHHhhhhcccCHH---HHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcceeec Confidence 89884 44443321100 00011112356689999999999999976655433211111 0 113456 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+..+++.++.+++.|..|++ +++..++.++.+.+.+.|.++.++++|. ++ +|.|+.+ T Consensus 84 n~~k~Ivd~~~~~l-~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~-~~---~~~i~~~ 157 (474) T protein:vir:97 84 NFHQNLVDQKVSYV-ASKPVTYSCEDENVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINE-NG---EMKLFRV 157 (474) T ss_pred chHHHHHHHHHhhh-hcCCceeccCcHHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecC-CC---eeEEEEE Confidence 77999999999999 77788889999999999999986 7899999999999999999988888774 33 7889999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeee-eeeeeeeeecCCccccCCccceeeeccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCA-RVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESP 226 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~-rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~ 226 (527) +|.++||++|+...++++++ +..|...+......... +...|+ ...+ ++..... T Consensus 158 ~p~~~~~v~d~~~~~~~~~~--ir~~~~~~~~~~~~yt~~~~~~y~---~~~~------------------~~~~~~~-- 212 (474) T protein:vir:97 158 PAEQAIPIWVDKEREELKSF--IRYYKFNNEEKVEFWTDTTVTYYV---LENG------------------GLIPDYY-- 212 (474) T ss_pred cccceEEEEcCCCCCceEEE--EEEEEecCeEEEEEEeCCeEEEEE---EcCC------------------ccccccc-- Confidence 99999999998877777776 33354433221111111 011111 0111 0000000 Q ss_pred ccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCC Q lcl|Aclame:pro 227 LEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAP 306 (527) Q Consensus 227 ~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~ 306 (527) .-....++...+++++.||||+|+|. ++|.|+++++++|+|++|+++|+.+..+++++.|+++++|.. T Consensus 213 -------~~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~ 280 (474) T protein:vir:97 213 -------YGANHVQSHFSNGNWGRVPFIAFKNN-----PEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYE 280 (474) T ss_pred -------cCcCcccccccccCCCccceEEecCC-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCC Confidence 00011234567899999999999996 369999999999999999999999999999999999999976 Q ss_pred CcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 307 PRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 307 ~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ..+..+.. -......++++++++.++.+....+.+++++|+++|.+.||..|++|.+.++.. ++++||.||+.+|+ T Consensus 281 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~ 356 (474) T protein:vir:97 281 GEDLEEFM--RGLKYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKF--GSAPSGIALKFLYG 356 (474) T ss_pred cccchhhh--hhhhccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccc--ccccHHHHHHHHHH Confidence 44322211 134567788999999999988777999999999999999999999999988744 46689999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) +|++|+++|+..|+.+|.|+++- +..++ +. . .....+.|+|.+.+|+|..+.++.+ .++|++|.+|++ T Consensus 357 ~l~~k~~~k~~~~~~~l~~~~~l-i~~~~----~~---~-~d~~~i~v~f~~~~p~~~~e~a~~~---~~~g~iS~et~l 424 (474) T protein:vir:97 357 NLDLKANKLKNKATVAIQELISF-IIDFN----NL---K-TDVKDIEISFNFNRMMNDAEQSQII---AQSQYLSRETLV 424 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHh----CC---C-cccceeeEEeccCcccCHHHHHHHH---HHcCCCCHHHHH Confidence 99999999999999999888744 33332 22 1 2334577899999999988888764 557999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ++| +..+|.+++.++++....+..-.... ......|++.+++++++.++- T Consensus 425 ~~l-------~~v~D~~~E~eri~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:97 425 KSS-------PLVDDYKAELERIEQEQMEYNKQLPN-LDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HhC-------CCCCCHHHHHHHHHHHHHHHHhhccc-cCCCCCCCcccCCCCcccccC Confidence 976 23455667777776533222222222 233445555566666665555 No 15 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=6.4e-57 Score=328.65 Aligned_cols=454 Identities=12% Similarity=0.126 Sum_probs=320.2 Q ss_pred CCCCh-------hhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc----c--cccccC Q lcl|Aclame:pro 1 MGQDK-------RQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG----D--QRPIYV 67 (527) Q Consensus 1 m~~~~-------~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~----~--~~~~~~ 67 (527) ||+++ .||..-+.... .+....-.....|+.+|+.+.+||.|++.-++...+-.... . -.++-. T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~ 83 (474) T protein:vir:94 7 MPWDKPYGEEVVEQLKPQFETQE---EMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWRITT 83 (474) T ss_pred ccCCCchhhHHHHhhhhcccCHH---HHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhccccccccccCcceeec Confidence 89884 44443321100 00011112356689999999999999976655433211111 0 113456 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+..+++.++.+++.|..|++ +++..++.++.+.+.+.|.++.++++|. ++ +|.|+.+ T Consensus 84 n~~k~Ivd~~~~~l-~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~~~~d~-~~---~~~i~~~ 157 (474) T protein:vir:94 84 NFHQNLVDQKVSYV-ASKPVTYSCEDENVLKVIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINE-NG---EMKLFRV 157 (474) T ss_pred chHHHHHHHHHhhh-hcCCceeccCcHHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCceEEEEEecC-CC---eeEEEEE Confidence 77999999999999 77788889999999999999986 7899999999999999999988888774 33 7889999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeee-eeeeeeeeecCCccccCCccceeeeccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCA-RVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESP 226 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~-rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~ 226 (527) +|.++||++|+...++++++ +..|...+......... +...|+ ...+ ++..... T Consensus 158 ~p~~~~~v~d~~~~~~~~~~--ir~~~~~~~~~~~~yt~~~~~~y~---~~~~------------------~~~~~~~-- 212 (474) T protein:vir:94 158 PAEQAIPIWVDKEREELKSF--IRYYKFNNEEKVEFWTDTTVTYYV---LENG------------------GLIPDYY-- 212 (474) T ss_pred cccceEEEEcCCCCCceEEE--EEEEEecCeEEEEEEeCCeEEEEE---EcCC------------------ccccccc-- Confidence 99999999998877777776 33354433221111111 011111 0111 0000000 Q ss_pred ccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCC Q lcl|Aclame:pro 227 LEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAP 306 (527) Q Consensus 227 ~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~ 306 (527) .-....++...+++++.||||+|+|. ++|.|+++++++|+|++|+++|+.+..+++++.|+++++|.. T Consensus 213 -------~~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~ 280 (474) T protein:vir:94 213 -------YGANHVQSHFSNGNWGRVPFIAFKNN-----PEEVSDIWMYKSIIDAIDKRLSDAQNMFDESVELIYILKGYE 280 (474) T ss_pred -------cCcCcccccccccCCCccceEEecCC-----cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCC Confidence 00011234567899999999999996 369999999999999999999999999999999999999976 Q ss_pred CcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 307 PRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 307 ~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ..+..+.. -......++++++++.++.+....+.+++++|+++|.+.||..|++|.+.++.. ++++||.||+.+|+ T Consensus 281 ~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~ 356 (474) T protein:vir:94 281 GEDLEEFM--RGLKYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKF--GSAPSGIALKFLYG 356 (474) T ss_pred cccchhhh--hhhhccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccc--ccccHHHHHHHHHH Confidence 44322211 134567788999999999988777999999999999999999999999988744 46689999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) +|++|+++|+..|+.+|.|+++- +..++ +. . .....+.|+|.+.+|+|..+.++.+ .++|++|.+|++ T Consensus 357 ~l~~k~~~k~~~~~~~l~~~~~l-i~~~~----~~---~-~d~~~i~v~f~~~~p~~~~e~a~~~---~~~g~iS~et~l 424 (474) T protein:vir:94 357 NLDLKANKLKNKATVAIQELISF-IIDFN----NL---K-TDVKDIEISFNFNRMMNDAEQSQII---AQSQYLSRETLV 424 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHh----CC---C-cccceeeEEeccCcccCHHHHHHHH---HHcCCCCHHHHH Confidence 99999999999999999888744 33332 22 1 2334577899999999988888764 557999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ++| +..+|.+++.++++....+..-.... ......|++.+++++++.++- T Consensus 425 ~~l-------~~v~D~~~E~eri~~E~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e 474 (474) T protein:vir:94 425 KSS-------PLVDDYKAELERIEQEQMEYNKQLPN-LDDGGADGAQQQEGSNNKESE 474 (474) T ss_pred HhC-------CCCCCHHHHHHHHHHHHHHHHhhccc-cCCCCCCCcccCCCCcccccC Confidence 976 23455667777776533222222222 233445555566666665555 No 16 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=5.8e-57 Score=328.87 Aligned_cols=472 Identities=13% Similarity=0.081 Sum_probs=312.6 Q ss_pred CCCChhhh-----hhhhHHhhcccC-------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCc-ccccccccC Q lcl|Aclame:pro 1 MGQDKRQY-----GSTQQLRAGEAN-------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD-EGDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy-----~~~~~~~~~~~~-------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d-~~~~~~~~~ 67 (527) .-.|..+| ...-.|.....+ +...|..+...|+.+|+.|.+||.|++..+....+..+ .....++.. T Consensus 13 ~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~ 92 (511) T protein:vir:93 13 LRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAH 92 (511) T ss_pred hhhhhhhhhhhhhCCcccccchhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcCcccccCcceeec Confidence 22222221 111111111111 11233345567888999999999999876544332222 223345677 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+..++++++++++.|..|+++++++.++.++.+++.+.|+|+.++++|. .+ +|.|+.+ T Consensus 93 n~~k~Iv~~~~~yl-~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~ay~~vy~de-~~---~~~i~~~ 167 (511) T protein:vir:93 93 DYASYISDFINGYF-LGNPIQYQDDDKDVLEVIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQ-DD---ETRLYKS 167 (511) T ss_pred chHHHHHHHHhhhh-cccCeeeccCChHHHHHHHHHHhhcCHhHHHHHHHHHHHhcCeeEEEEEeCC-CC---ceEEEEE Confidence 88999999999999 7778888999999999999999999999999999999999999998999874 23 7889999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|.+.||++++...++++..--.|.....++..... . .|...|.++ .|. +|.-.++.... T Consensus 168 ~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~~~~--~---~~~~iyt~~-------~i~----~~~~~~~~~~~---- 227 (511) T protein:vir:93 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDE--V---FTVDLFTSH-------GVY----RYLTSRTNGLK---- 227 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeeccccccce--E---EEEEEEeCC-------cEE----EEEecCCCccc---- Confidence 999999999987776655432222222222221111 0 111111111 110 11111110000 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) ....++...|++++.||||+|+|. .+|.|+++++++|+|++|+++|+.+..+++++.|++++.|... T Consensus 228 --------~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~ 294 (511) T protein:vir:93 228 --------LTPRENGFESHSFERMPITEFSNN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLN 294 (511) T ss_pred --------cccccccccccCCCccceEEecCC-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCcc Confidence 011234567999999999999985 4799999999999999999999999999999999999988654 Q ss_pred cCCCC-------cc---cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccccc Q lcl|Aclame:pro 308 RDSRG-------NM---VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) Q Consensus 308 ~d~~G-------~~---~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~S 377 (527) .+... .. .+.....+......+++++..|....+.+++++|+++|.+.||.+|.+|.+.++.+. +.+| T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~--~n~S 372 (511) T protein:vir:93 295 LDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS--GTQS 372 (511) T ss_pred cCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc--ccch Confidence 33211 10 011112233344677888988887778999999999999999999999999988554 5679 Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 378 GIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 378 G~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) |.||+..|++|..|+.+|+..|+.+|.|+++-+ ..++.. .+. .........++++|.+.+|+|.+++++.+++| + T Consensus 373 g~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li-~~~l~~-~~~-~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~ 447 (511) T protein:vir:93 373 GEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLL-ETILKN-TWS-IDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--G 447 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh-ccC-cccccccccceEEeCCCCCCCHHHHHHHHHHH--h Confidence 999999999999999999999999999987544 333311 110 11112233578899999999999999999888 6 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHh-cCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEA-ADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa-~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) |++|.+|++++| + ..++.+++.+|+++...++... ...++.. .++.++++.+++. ....- T Consensus 448 g~iS~et~~~~l---~----~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~ 508 (511) T protein:vir:93 448 GKISQTTLMSLF---S----FFQDPELEVKKIEEDEKESIKKAQKGIYKD--PRDINDDEQDDDT-KDTVD 508 (511) T ss_pred ccCchHHHHHhC---C----CCCCHHHHHHHHHHHHHHHHHHHhhhcccC--CCCCCCCCCCCcc-ccccc Confidence 999999999876 2 2345556666665543322211 2222111 1111222222222 12222 No 17 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=3.1e-56 Score=324.89 Aligned_cols=450 Identities=12% Similarity=0.116 Sum_probs=311.5 Q ss_pred CCCChh-----------hhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc---cc---c Q lcl|Aclame:pro 1 MGQDKR-----------QYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG---DQ---R 63 (527) Q Consensus 1 m~~~~~-----------qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~---~~---~ 63 (527) ||.++- ++.-...++...- .....|+.+|+.+.+||.|.+.-++...+..... .. . T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-------~~~~~~~~~~~~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~~~~ 79 (474) T protein:vir:95 7 MPWDKPYGEEVVEQLKPQFETQEEMIIRLI-------DDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVYGNIDYDKPDW 79 (474) T ss_pred cCCCCchhhHHHHhhhhccCChHHHHHHHH-------HHHHHHHHHHHHHHHHhcccCchhccccccccccccccccccc Confidence 777731 2222222222111 1346789999999999999876554433211110 11 1 Q ss_pred cccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceE Q lcl|Aclame:pro 64 PIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLS 143 (527) Q Consensus 64 ~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~ 143 (527) ++-.|-+++||++.++|| +|.+..++++++++++.|+.|++ ++++.++.++.+.+.+.|.++.++++|. ++ +|. T Consensus 80 ki~~n~~~~Ivd~~~~~l-~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~e~~~~~~~~G~~~~~v~~d~-~~---~~~ 153 (474) T protein:vir:95 80 RITTNFHQNLVDQKVSYV-ASKPVTYSCEDESVLKIIHDVLD-TRWDNKLIDILTATSNKGIDWLQVYINE-NG---EMK 153 (474) T ss_pred eeccchHHHHHHHHHhhh-ccCCceeccCchHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCcEEEEEEecC-CC---ceE Confidence 344677999999999999 88888889999999999999996 7799999999999999999988888874 33 788 Q ss_pred EEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeee-eeeeeeecCCccccCCccceeeeccccccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARV-QKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) Q Consensus 144 i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr-~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~ 222 (527) |+.++|.+.||++++...+++.++ +..|...+..........+ ..|+ +.-++|... T Consensus 154 i~~~~p~~~~~v~d~~~~~~~~~~--i~~~~~~~~~~~~~y~~~~~~~~~---------------------~~~~~~~~~ 210 (474) T protein:vir:95 154 LFRVPAEQAIPIWVDKEREELKSF--IRYYKFNNEEKVEFWTDTTVTYYV---------------------LENGGLIPD 210 (474) T ss_pred EEEEcccceEEEEcCCCCCceEEE--EEEEEEcCeeEEEEEeCCeEEEEE---------------------EcCCccccc Confidence 999999999999998777777665 3334433322111111111 1111 011112111 Q ss_pred ccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe Q lcl|Aclame:pro 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) Q Consensus 223 ~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~ 302 (527) ... -.....+...+++++.||||+|+|. +.|.|+++++++|+|++|+++|+.+..++++..|++++ T Consensus 211 ~~~---------~~~~~~~~~~~~~~g~iPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~ 276 (474) T protein:vir:95 211 YYY---------GANHIQSHFSNGNWGRVPFIAFKNN-----PEEVSDIWMYKSLIDAIDKRLSDAQNMFDESVELIYIL 276 (474) T ss_pred ccc---------CcccccccccccCCCccceEeecCC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeee Confidence 100 0012234567899999999999995 46999999999999999999999999999999999999 Q ss_pred ccCCCcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHH Q lcl|Aclame:pro 303 DSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALD 382 (527) Q Consensus 303 ~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALq 382 (527) +|....+..+- .-......++++++++.+..+....+++++++|+++|.+.|+..|++|.+.++.+ ++++||.||+ T Consensus 277 ~g~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~n~Sg~Alk 352 (474) T protein:vir:95 277 KGYEGQDLEEF--MRGLKYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKF--GSAPSGIALK 352 (474) T ss_pred ecCCcccchhh--hhhhhccceeeccCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc--cccchHHHHH Confidence 98765432211 1234557788999999998888777999999999999999999999999988754 4568999999 Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccH Q lcl|Aclame:pro 383 LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPA 462 (527) Q Consensus 383 l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~ 462 (527) .+|++|.+|+++|+..|+.+|.|+++.+ ..++ +. ......++|+|.+.+|.|..+.++.+ .++|++|. T Consensus 353 ~~~~~l~~k~~~k~~~~~~~l~~~~~li-~~~~----g~----~~d~~~i~v~f~~~~p~d~~e~a~~~---~~~g~iS~ 420 (474) T protein:vir:95 353 FLYGNLDLKANKLKNKATVAIQELIGFI-IDFN----NL----KMDVKDIEISFNFNRMMNDAEQSQII---AQSQYLSR 420 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----CC----CcccceeeEEeccCCCcCHHHHHHHH---HhcCCCch Confidence 9999999999999999999999987543 3332 22 12345578899999999998888764 56799999 Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 463 KKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 463 ~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +|++++| + -.++.+++.++++....+..-.... .....+|++.++++.++.+.- T Consensus 421 et~i~~l---~----~v~d~~~E~~ri~~E~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~ 474 (474) T protein:vir:95 421 ETLVKSS---P----LVDDYKAELERIEQEQMEYNKQLPN-LDDGGADGAQQQERSNDKESE 474 (474) T ss_pred HHHHHhC---C----CCCCHHHHHHHHHHHHHHHHhcccc-cccccCCCCcCCCCCccCCCC Confidence 9999976 2 2444556666665432111111111 111223333332222222222 No 18 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=3.5e-56 Score=324.63 Aligned_cols=471 Identities=12% Similarity=0.089 Sum_probs=313.5 Q ss_pred CCCChhh-----hhhhhHHhhcccCC-------CCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc-cccccccC Q lcl|Aclame:pro 1 MGQDKRQ-----YGSTQQLRAGEANF-------PNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE-GDQRPIYV 67 (527) Q Consensus 1 m~~~~~q-----y~~~~~~~~~~~~~-------~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~~~~ 67 (527) .-.|..+ |...-.|....-+. ...|..+...++.+|+.|.+||.|++..+....+..++ +...++-. T Consensus 13 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~ 92 (511) T protein:vir:10 13 LRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKCIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAH 92 (511) T ss_pred hhhhhhhhhhhhhcCCccCchhhhhcccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcccccccCcceeec Confidence 2222222 11111122111111 12233445667889999999999998776544333322 22244556 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+-.+++.++++++.|.+|+++++++.++.++.+.+.+.|.|+.+++.|. .+ ++.++.+ T Consensus 93 n~~k~Iv~~~~~yl-~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~ay~~vy~de-dg---~~~i~~~ 167 (511) T protein:vir:10 93 DYASYISDFINGYF-LGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYEIMIRNQ-DD---ETRLYKS 167 (511) T ss_pred chHHHHHHHHhhhh-cccCceeecCchHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCC-CC---ceEEEEE Confidence 77999999999999 7888888999999999999999999999999999999999999988888774 33 7888999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|.+.||++++...++++..--.|.....++..... + .|...|.++. |.. +...-++|.. T Consensus 168 ~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~-~----~~~~iyt~~~-------i~~--~~~~~~~~~~------ 227 (511) T protein:vir:10 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDE-V----FTVDLFTSHG-------VYR--YLTSRTNGLK------ 227 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeecccCccce-E----EEEEEEeCCc-------EEE--EEecCCCccc------ Confidence 999999999987766655432233333333221111 1 1111111110 000 0000001100 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) ....++...|+|++.||||.|+|. .+|.|+++++++|+|++|.++|+.+..++++++|+++++|... T Consensus 228 --------~~~~~~~~~~~~~~~vPvv~f~nn-----~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~ 294 (511) T protein:vir:10 228 --------LTPRENGFESHSFERMPITEFSNN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLN 294 (511) T ss_pred --------ccccccccccccCcceeEEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecccc Confidence 011234557899999999999995 4799999999999999999999999999999999999988654 Q ss_pred cCCC-------Cccc---ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccccc Q lcl|Aclame:pro 308 RDSR-------GNMV---PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) Q Consensus 308 ~d~~-------G~~~---p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~S 377 (527) .+.. +... +.....+.....++++++..|....+.+++++|+++|.+.||..|.+|.+.++.+. +.+| T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~--~n~S 372 (511) T protein:vir:10 295 LDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS--GTQS 372 (511) T ss_pred CCchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc--ccch Confidence 3321 1110 01111222334566788888887678999999999999999999999999998554 5679 Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 378 GIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 378 G~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) |.||+..+++|.+|+.+|+..|..+|+|++ .++..++....+... ......++|+|.+.+|+|.+++++.+++| . T Consensus 373 g~Al~~~~~~l~~k~~~k~~~f~~~l~~~~-~li~~~~~~~~~~~~--~~d~~~i~i~f~~~~p~d~~~~~~~~~kl--~ 447 (511) T protein:vir:10 373 GEAMKYKLFGLEQRTKTKEGLFTKGLRRRA-KLLETILKNTRSIDA--NKDFNTVRYVYNRNLPKSLIEELKAYIDS--G 447 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCccc--ccccceeeEEeCCCCCcCHHHHHHHHHHH--h Confidence 999999999999999999999999999987 455555533222211 22334578899999999999999999988 4 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH--hcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAE--AADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~a--a~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) |++|.+|++++| + ..++.+++.+|+++...+... ..++.+.....+++ +.+++..+++- T Consensus 448 G~iS~et~~~~l---~----~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 508 (511) T protein:vir:10 448 GKISQTTLMSLF---S----FFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDD----EQDDDTKDTVD 508 (511) T ss_pred ccCcHHHHHHhC---C----CCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC----CCCCcccCccc Confidence 999999999976 2 234455566666543222221 12222222222222 22222222222 No 19 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=2.8e-56 Score=325.12 Aligned_cols=457 Identities=11% Similarity=0.119 Sum_probs=304.4 Q ss_pred hhHHhhcccCCCCCCC--------hHHHHHHHHHHHHHHHhcCChhheEeeecC-CcccccccccCCchhHHHHhhhhhh Q lcl|Aclame:pro 11 TQQLRAGEANFPNAVT--------DFDKARLASYRLYEDMYLTNTSDYQVILRG-GDEGDQRPIYVPNGEKLIEAKMRFL 81 (527) Q Consensus 11 ~~~~~~~~~~~~~~v~--------~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g-~d~~~~~~~~~p~~~k~v~~~~~~L 81 (527) ...-+.|... ..++ .....|+.+|+.+.+||.|.+. ++-+-+. ..+......-.+-+++||++.++|| T Consensus 1 ~~~~i~~~~~--~~~~~~~~~~L~~~~~~~~~r~~~~~~YY~G~~~-i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l 77 (485) T protein:vir:24 1 MTAPLPGQEE--IADPAIARDEMVSAFEDQNQNLRSNTSYYEAERR-PEAIGVTVPVQMQSLLAHVGYPRLYVDSIAERQ 77 (485) T ss_pred CCCCCCCCCc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhhcCcccchhhhhhhhccchHHHHHHHHhhhh Confidence 3333344433 2222 2345688999999999999963 2211111 1111112223456899999999999 Q ss_pred ccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCC----CccceEEEEEccceEEEEec Q lcl|Aclame:pro 82 GQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKD----EGSRLSLHEVDPSTYFPYED 157 (527) Q Consensus 82 g~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~----~~~r~~i~~vdP~~~fp~~d 157 (527) ++-++.+. .+++.++.+..|+++|+|+.++.++.+.+.+-|.|+.+|+.|.... .-.++.|+.++|...|+++| T Consensus 78 -~~~g~~~~-~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D 155 (485) T protein:vir:24 78 -AVEGFRLG-DADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEID 155 (485) T ss_pred -ccCceecC-CCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEee Confidence 43344322 3456677788899889999999999999999999999998875321 11367788999999999998 Q ss_pred CCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeecc Q lcl|Aclame:pro 158 PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLST 237 (527) Q Consensus 158 ~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~ 237 (527) +... +++..... |...++.. .. +...|.++. .+.+... -++|. T Consensus 156 ~~~~-~~~~~~~~--~~~~~~~~-~~-------~~~~y~~~~------~~~~~~~---~~~~~----------------- 198 (485) T protein:vir:24 156 PRIG-RPAKAIRV--AYDAEGNE-IQ-------AATLYTPNE------TFGWFRA---EGEWV----------------- 198 (485) T ss_pred CCcC-ceeEEEEE--EEeecCCe-EE-------EEEEEcCCc------EEEEEec---CCceE----------------- Confidence 8753 44443222 32322211 11 111111100 0000000 01111 Q ss_pred CcccccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc-----CCC Q lcl|Aclame:pro 238 LTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR-----DSR 311 (527) Q Consensus 238 ~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~-----d~~ 311 (527) .+...|+++++||||+|+|.+...++||.|+|++ +++|+|++|+++||++.++++++.|++++.|..+. +++ T Consensus 199 --~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~ 276 (485) T protein:vir:24 199 --EWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPET 276 (485) T ss_pred --eecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCcccccccccc Confidence 1234579999999999999988899999999995 99999999999999999999999999999887643 234 Q ss_pred CcccceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHH Q lcl|Aclame:pro 312 GNMVPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILS 390 (527) Q Consensus 312 G~~~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLla 390 (527) |. ..+...+|.||.++ ++.+|.+++. +++++|.++++.+...++.++.||..+||... .+..||.||++.+.+|+. T Consensus 277 ~~-~~~~~~~~~i~~~~~~~~~~~q~~~-~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~-~n~~Sg~Al~~~~~~l~~ 353 (485) T protein:vir:24 277 GQ-TLFDAYLARILAFEDAEGKIQQFSA-AELANFTNALDQIAKQVAAYTGLPPQYLSTAA-DNPASAEAIRAAESRLIK 353 (485) T ss_pred cc-chhhhcccceeccCCCCceEEeecc-cchHHHHHHHHHHHHHHhcccCCCHHHhcccc-CcchHHHHHHHHHHHHHH Confidence 44 34678899999986 6899999984 68999999999999999999999999998443 233599999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcC--CccHHHHHHH Q lcl|Aclame:pro 391 SCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAG--LIPAKKLTEE 468 (527) Q Consensus 391 kv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aG--lls~~ta~~~ 468 (527) |+++||..|+.+|.|+++-+ ..++ +-.. .......++|+|.+++|.|..+.++.+++|+++| ++|.+|++++ T Consensus 354 ka~~~~~~f~~~l~~~~~l~-~~~~----~~~~-~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~ 427 (485) T protein:vir:24 354 KVERKNAIFGGAWEEAMRLA-YRLM----KGGD-VPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKD 427 (485) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh----cCCC-CccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhh Confidence 99999999999999987533 3332 1111 1123345778999999999999999999999987 8999999886 Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHH-HhcCcccccccccCCCCc--ccccc--cCCCCCC Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQATEDKKTQGIAQA-EAADPFGAQMAAEQGIPD--EEDDQ--ALNGQPL 527 (527) Q Consensus 469 L~~~g~~~~~e~~~~~~~e~~a~~a~~~~-aa~d~~g~~~~~d~g~~d--~~~~~--~~~~~~~ 527 (527) | | ++.+++++ .++++.+..++. ...+.++.....++|.|+ ++.++ ..+|-.- T Consensus 428 l---~---~~~d~~~e-~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 484 (485) T protein:vir:24 428 M---G---YSIAEREE-MRRWDEEEAAMGLGLLGTMVDADPTVPGSPNPTPAPKPQPAIEGGDS 484 (485) T ss_pred C---C---CCHhHHHH-HHHHHHHHhhhhhhHHHhhcccCCCCCCCCCCCCCCCCccCCCCCCC Confidence 5 3 44444433 333332222111 112222222222222222 22222 2222222 No 20 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=100.00 E-value=4.8e-56 Score=323.87 Aligned_cols=453 Identities=14% Similarity=0.125 Sum_probs=311.1 Q ss_pred CCC----ChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQ----DKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~----~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~ 76 (527) |+. ++++ .. +.|..+...|+.+|+.+.+||.|++.-++.-.+.++.....++-.|-+++||++ T Consensus 9 ~~~~~~~~~~~---~~----------~~i~~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~~~~ki~~n~~~~iv~~ 75 (489) T protein:vir:99 9 IDYESKLWIDQ---LK----------NYISRFKAEQLERLKELKRYYLGDNNIKYRPAKTDKYAADNRIASDFAKYITVF 75 (489) T ss_pred eCCCCCCCHHH---HH----------HHHHHHHHHHHHHHHHHHHHhcccCccccccccccccCCcceeecchHHHHHHH Confidence 222 2222 11 223334567889999999999999866655445555444456778889999999 Q ss_pred hhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEe Q lcl|Aclame:pro 77 KMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYE 156 (527) Q Consensus 77 ~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~ 156 (527) .++|| +|.+-.++++++++++.|..|+++++++.++..+++++.+.|+|+..+++.+..+...++.|+.++|.++||++ T Consensus 76 ~~~~l-~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~~~i~~~~p~~~~~v~ 154 (489) T protein:vir:99 76 EQGYM-LGVPVEYKNENKDLQAAIDLMSVRNNEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTEVKLYQLPAEQTFVIY 154 (489) T ss_pred Hhhhh-ccCCceeecCChhHHHHHHHHHhhcChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcceEEEEEcccceEEEE Confidence 99999 77777888899999999999999999999999999999999999999888765544558999999999999999 Q ss_pred cCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeec Q lcl|Aclame:pro 157 DPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLS 236 (527) Q Consensus 157 d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~ 236 (527) ++...++++.. +..|...+...... .|...+.+ +.+. +|+-.+.. .. T Consensus 155 dd~~~~~~~~~--i~~~~~~~~~~~~~------~~~~~y~~-------~~i~----~~~~~~~~--------------~~ 201 (489) T protein:vir:99 155 DDTYQRNSLMA--VHFYDIDYGSGKRK------QIIKAYTS-------DTIY----TYEDYNLE--------------TK 201 (489) T ss_pred cCCCCCceEEE--EEEEEEecCCCceE------EEEEEEeC-------CcEE----EEEecCCC--------------cc Confidence 87765554443 21233222211111 11111111 1110 11110000 00 Q ss_pred cCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC-Ccc- Q lcl|Aclame:pro 237 TLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR-GNM- 314 (527) Q Consensus 237 ~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~-G~~- 314 (527) ....++..|++++.||||+|+|. .+|.|+++++++|+|++|+++|+.+..+.+++.|+++++|....+.+ ++. T Consensus 202 ~~~~~~~~~~~~g~vPvv~~~n~-----~~~~s~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~~~~~~~~~~ 276 (489) T protein:vir:99 202 GMRLKDYEGHFFKGVPVNEYANN-----EERTGAYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAYTGADENDYL 276 (489) T ss_pred cceecccccccCCceeEEEeecC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcccccchhhh Confidence 11224567899999999999995 46999999999999999999999999999999999999886532211 111 Q ss_pred cce------------ecCCCeeEecCCC-------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 315 VPW------------TISPLGMVEHGQN-------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 315 ~p~------------~v~pg~~~el~~~-------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) ..+ ....+.++.+.++ ..+..|....+.+.+++|+++|.+.|+..|++|.+.+.. .++. T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~--~~~n 354 (489) T protein:vir:99 277 DDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQDMK--FSGV 354 (489) T ss_pred hhcccccccccccccccccceeeeeccccCccccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCccccccc--cccc Confidence 111 1122334443333 234455544578899999999999999999999987763 3456 Q ss_pred ccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc---cceeEEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 376 ESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD---KKLTVTITFRDPKPVNNEKRFAQLL 452 (527) Q Consensus 376 ~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~---~~~~v~v~w~d~lP~D~~~~i~~~v 452 (527) .||.||+..+++|.+|+++||..|+.+|.|+++ ++..++ ++...... ....++|+|.+.+|+|.++.++.++ T Consensus 355 ~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~-li~~~~----~~~~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~ 429 (489) T protein:vir:99 355 QSGESMKYKLMASDNYREKQERLFKKGLMRRLR-LAANIW----AIKGNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQ 429 (489) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----hhcCCccccccccccceEEeCCCCCcCHHHHHHHHH Confidence 799999999999999999999999999999885 444443 22222211 1223678999999999999999998 Q ss_pred HHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCC Q lcl|Aclame:pro 453 ELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQP 526 (527) Q Consensus 453 ~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~ 526 (527) +| +|++|.+|++++| ...+.++.+++.+++++.........+. +..+|.-.+++ ..-..| T Consensus 430 kl--~giis~et~~~~l-----~~v~~~d~~~E~~ri~~E~~~~~~~~~~---~~~~~~~~~~~----~~~~~p 489 (489) T protein:vir:99 430 NL--YGIVSDQTIFEIL-----NTVTGVDAEAELKRLKEEADKKQSLPEP---RLVGDASGQEE----PTAEKP 489 (489) T ss_pred HH--hccCCHHHHHHhc-----CCCCchhHHHHHHHHHHHHHHHhccccc---cccCCCCCCcC----CCCCCC Confidence 87 4999999999976 2446678888888887643322222222 22222211111 122233 No 21 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=3e-56 Score=325.01 Aligned_cols=461 Identities=11% Similarity=0.090 Sum_probs=310.3 Q ss_pred CCCChhhhhhhhHHhhcccC----CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc---ccc---ccccCCch Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEAN----FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE---GDQ---RPIYVPNG 70 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~----~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~---~~~---~~~~~p~~ 70 (527) -|.++.-=.-...++.-... +..-....++.|+..|+.+..||.|.+.-++...+..-. ... .++-.+-+ T Consensus 6 ~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~ 85 (478) T protein:vir:10 6 WPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPPKRDVNGDYDETKPDWRMYTNYH 85 (478) T ss_pred CCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhccccccccccccccccccceeccchH Confidence 12221111111111111111 011122355678999999999999987544432211100 001 13456778 Q ss_pred hHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 71 ~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) ++||++.++|| +|.+-.+++++++.++.|..|++ +++..++.++.|++.+.|.|+.++++|. ++ ++.++.++|. T Consensus 86 ~~ivd~~~~~l-~g~~~~~~~~~d~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~~~~d~-~g---~~~~~~~~p~ 159 (478) T protein:vir:10 86 QNLVDQKVAYA-VANPVTFGVDNDKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDE-EG---EFKTFRVPAE 159 (478) T ss_pred HHHHHHHHhhh-ccCCeeeecCChHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCeEEEEEEecC-CC---eeEEEEEccc Confidence 99999999999 77777788999999999999996 7899999999999999999999998885 23 7889999999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) +.||+++++..++++++ +..|...+..........+++|- ...++.. . +.. +.. T Consensus 160 ~~~~i~d~~~~~~~~~~--v~~~~~~~~~~~~~y~~~~i~~~--~~~~~~~------~-----~~~--~~~--------- 213 (478) T protein:vir:10 160 QAVPIWTNKERDELQAF--IRVYELDGAERVEYWTKDDVTYY--ELKEGQL------I-----PDF--YRS--------- 213 (478) T ss_pred ceEEEEcCCCCCceEEE--EEEEEecCceEEEEEeCCeEEEE--EEcCCee------e-----ccc--ccc--------- Confidence 99999998877777665 33354433222111111122110 0011110 0 000 000 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS 310 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~ 310 (527) .............|++++.||||+|+|. ++|+|+++++++|+|++|+++|+++.++++++.|+++++|....+. T Consensus 214 -~~~~~~~~~~~~~~~~~~~vPvv~~~n~-----~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~~~~~ 287 (478) T protein:vir:10 214 -DDHIQPHYYQGNKLMSWGRVPFIPFKNN-----PQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYEGEDM 287 (478) T ss_pred -ccccccceecccccccCCccceEEeccC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCcccc Confidence 0111112223456899999999999995 5799999999999999999999999999999999999999865432 Q ss_pred CCcccceecCCCeeEecC--CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccH Q lcl|Aclame:pro 311 RGNMVPWTISPLGMVEHG--QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAI 388 (527) Q Consensus 311 ~G~~~p~~v~pg~~~el~--~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PL 388 (527) ++ ....+..+.++.++ +++.+..+....+++++++|+++|.+.|+..|++|.+.++.. ++++||.||++.|++| T Consensus 288 -~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~~l 363 (478) T protein:vir:10 288 -KD-FMHNLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKF--GNSPSGIALKFMYSNL 363 (478) T ss_pred -ch-hhhhhhhcceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCcccc--ccccHHHHHHHHHHHH Confidence 11 11224445555554 568888887666899999999999999999999999988754 4567999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH Q lcl|Aclame:pro 389 LSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEE 468 (527) Q Consensus 389 lakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~ 468 (527) .+|+.+|+..|+.+|.|+++.+ .++ .+.. .....++|+|.+.+|+|..+.++.+++| +|++|.+|++++ T Consensus 364 ~~k~~~~~~~~~~~l~~~~~li-~~~----~g~~----~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~ 432 (478) T protein:vir:10 364 DLKANKLKNKTLTALQELLQYI-IDF----YRLD----VKVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILSN 432 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH----hCCC----cccccceEEecCCCCCCHHHHHHHHHHH--hCCCChHHHHHh Confidence 9999999999999998887443 222 2221 2234578999999999999999998887 899999999997 Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 469 L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) | +..++.+++.+++++...+........ .+..+++..+++++++.+ T Consensus 433 l-------~~v~D~~~E~~ri~~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 478 (478) T protein:vir:10 433 H-------AWVEDPVAEMERIEQENIELNQQLPDI-EEGLNGEQQRQSENNQPE 478 (478) T ss_pred C-------CCCCCHHHHHHHHHHHHHHHHhhcccc-ccccCCCCCCCCCCCCCC Confidence 7 234567777777775422111111111 122233333333333333 No 22 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=5.2e-56 Score=323.65 Aligned_cols=460 Identities=11% Similarity=0.118 Sum_probs=300.8 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) +|....--....- ...+-.....|+.+|+.+.+||.|++.-...-..-.++......-.+-++|||++.+.| T Consensus 5 i~~~~~~~~~~~~--------~~~l~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~ 76 (485) T protein:vir:10 5 LPGQEEIEDPAIA--------RDEMVSAFEDSTQNLKTNTSYYEAERRPEAIGVTVPIQMQSLLAHVGYPRLYVDSIAER 76 (485) T ss_pred CCCCCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCcchhcCCCCChhhhhhhhhcCcHHHHHHHHHhh Confidence 2222111111100 01112234567889999999999997532111101111112223346689999999999 Q ss_pred hccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCC----CccceEEEEEccceEEEEe Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKD----EGSRLSLHEVDPSTYFPYE 156 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~----~~~r~~i~~vdP~~~fp~~ 156 (527) | +.-++.+ ..+.+.++.+..|+++++|+.++.++++.|++-|.|+.+|+.|+... ...++.|+.++|...|+++ T Consensus 77 l-~~~g~~~-~~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~ 154 (485) T protein:vir:10 77 Q-AVEGFRF-GDADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEI 154 (485) T ss_pred h-cccceec-CCCchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEE Confidence 9 3223333 23455677788888889999999999999999999998988875421 1236788999999999999 Q ss_pred cCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeec Q lcl|Aclame:pro 157 DPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLS 236 (527) Q Consensus 157 d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~ 236 (527) |+... ++... +.. |...++.. +++...|.++ .+ ++- ...-++|. T Consensus 155 D~~~~-~~~~~-~~~-~~~~~~~~--------~~~~~~y~~~-------~~-~~~-~~~~~~~~---------------- 198 (485) T protein:vir:10 155 DPRIG-RVSKA-IRV-AYDAEGNE--------IQAATLYTPN-------DI-FGW-YRVENEWQ---------------- 198 (485) T ss_pred cCCCC-ceeEE-EEE-EEeeCCCe--------EEEEEEEeCC-------eE-EEE-EEcCCceE---------------- Confidence 87654 33322 121 22221111 0111111111 00 000 00011121 Q ss_pred cCcccccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc-----CC Q lcl|Aclame:pro 237 TLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR-----DS 310 (527) Q Consensus 237 ~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~-----d~ 310 (527) .++..|+++++||||+|+|.+...++||.|+|++ +++|+|++|+++||+..++++++.|++++.|..+. ++ T Consensus 199 ---~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~ 275 (485) T protein:vir:10 199 ---EWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDPE 275 (485) T ss_pred ---EeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCccccccccc Confidence 1234589999999999999988899999999995 99999999999999999999999999998886542 23 Q ss_pred CCcccceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHH Q lcl|Aclame:pro 311 RGNMVPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAIL 389 (527) Q Consensus 311 ~G~~~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLl 389 (527) +|+. .+...+|.+|.++ ++++|.+++. +++++|.++++.+...++.+++||..+||... .+..||.||+..+.+|+ T Consensus 276 ~~~~-~~~~~~~~i~~~~~~d~k~~q~~~-~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~-~n~~Sg~Al~~~~~~l~ 352 (485) T protein:vir:10 276 TGQT-LFDAYLARILAFEDAEGKIQQFSA-AELANFTNALDQIAKQVAAYTGLPPQYLSTAA-DNPASAEAIRAAESRLI 352 (485) T ss_pred ccch-hhhhcccceeccCCCCceEEeecc-cchHHHHHHHHHHHHHHhcccCCCHHHhcccc-CchhHHHHHHHHHHHHH Confidence 4443 3678899999986 6889999984 68999999999999999999999999998543 23459999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcC--CccHHHHHH Q lcl|Aclame:pro 390 SSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAG--LIPAKKLTE 467 (527) Q Consensus 390 akv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aG--lls~~ta~~ 467 (527) .|+++||..|+.+|.|+++ ++..+. +-.. .......++|+|.+++|+|..+.++.+++|+++| ++|.+++++ T Consensus 353 ~k~~~k~~~f~~~l~~~~~-l~~~~~----~~~~-~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~ 426 (485) T protein:vir:10 353 KKVERKNSIFGGAWEEAMR-LAYRMM----KGGD-VPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARK 426 (485) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHh----CCCC-CcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHH Confidence 9999999999999998876 333222 1111 1122345678999999999999999999999988 899999998 Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHH----HHHH-HHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 468 ELSKIMGFELTEEDFRQATEDKKTQ----GIAQ-AEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 468 ~L~~~g~~~~~e~~~~~~~e~~a~~----a~~~-~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +| | ++.++++++ ++++.+ +... .++.++.+ ...|++.++++.+...+.++= T Consensus 427 ~l---g---~~~~~~~~~-~~~~ee~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 482 (485) T protein:vir:10 427 DM---G---YSIAEREEM-RRWDEEEAAMGLGLIGTMVDPNP--TVPGSPSPAPAPKPAALESGG 482 (485) T ss_pred hC---C---CCHhHHHHH-HHHHHHHHHHHHHHHHHhhccCC--CCCCCCCccccccCcCCCCCC Confidence 75 3 444444332 222221 1111 12233322 112222222222222222222 No 23 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=4.4e-56 Score=324.08 Aligned_cols=470 Identities=13% Similarity=0.084 Sum_probs=312.1 Q ss_pred CCCChhhh-----hhhhHHhhcccC-------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc-cccccccC Q lcl|Aclame:pro 1 MGQDKRQY-----GSTQQLRAGEAN-------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE-GDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy-----~~~~~~~~~~~~-------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~~~~ 67 (527) .-.|..+| ...-.|.....+ +...|..+...|+.+|+.|.+||.|++..+....+..++ +...++-. T Consensus 13 ~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~ 92 (511) T protein:vir:96 13 LRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAH 92 (511) T ss_pred hhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccccCcccccccCcceeec Confidence 22222221 111111111111 112233345567788999999999998776544332222 22245566 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+-.+++.++++++.|..|+++++++.++.++.+.+.+.|.|+.++++|. .+ +|.|+.+ T Consensus 93 n~~k~Iv~~~~~yl-~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~-dg---~~~i~~~ 167 (511) T protein:vir:96 93 DYASYISDFINGYF-LGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQ-DD---ETRLYKS 167 (511) T ss_pred chHHHHHHHHhhhh-cccCceeecCchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCC-CC---ceEEEEE Confidence 88999999999999 8888888999999999999999999999999999999999999988888874 33 7888999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccc--cccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPG--KWDDRPES 225 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g--~wd~~~~~ 225 (527) +|.+.||++++...++++..--.|.....++... .. +.|...|.++. + .+|..+ +|.. T Consensus 168 ~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~-~~----~~~~~vyt~~~-------i----~~~~~~~~~~~~---- 227 (511) T protein:vir:96 168 DAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDE-DE----VFTVDLFTSHG-------V----YRYLTNRTNGLK---- 227 (511) T ss_pred cccceEEEEcCCCCCceEEEEEEEEeeecccccc-ce----EEEEEEEeCCc-------E----EEEEecCCCccc---- Confidence 9999999999877666444311221111121110 00 01111111111 0 011111 1110 Q ss_pred cccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccC Q lcl|Aclame:pro 226 PLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSA 305 (527) Q Consensus 226 ~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~ 305 (527) -...++...|+|++.||||.|+|. .+|.|+++++++|+|++|.++|+.+..++++++|+++++|. T Consensus 228 ----------~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~ 292 (511) T protein:vir:96 228 ----------LTPRENSFESHSFERMPITEFSNN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGN 292 (511) T ss_pred ----------ccccccccccCcCcccceEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecC Confidence 012235667999999999999985 47999999999999999999999999999999999999886 Q ss_pred CCcCC-CCcc----cceecCCCee-----EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 306 PPRDS-RGNM----VPWTISPLGM-----VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 306 ~~~d~-~G~~----~p~~v~pg~~-----~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) ...+. ..+. ..+.+.++.. ...++++.+..|....+.+++++|+++|.+.||.+|.+|.+.++.+. +. T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~--~n 370 (511) T protein:vir:96 293 LNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS--GT 370 (511) T ss_pred ccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc--cc Confidence 54332 1110 0111222221 12355677888887668999999999999999999999999998554 56 Q ss_pred ccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 376 ESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 376 ~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) +||.||+..|++|..|+.+|+..|+.+|.|+++ ++..++....+... ......++|+|.+.+|+|..++++.+++|. T Consensus 371 ~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~-li~~~~~~~~~~~~--~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~ 447 (511) T protein:vir:96 371 QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAK-LLETILKNTRSIDA--NKDFNTVRYVYNRNLPKSLIEELKAYIDSG 447 (511) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcc--ccccccceEEeCCCCCcCHHHHHHHHHHHh Confidence 799999999999999999999999999999874 45555533222211 122335788999999999999999999884 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHh-cCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEA-ADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa-~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) |++|.+|++++| +..++.+++.+||++...++... ...++. ..++..+.+.+++..+... T Consensus 448 --G~iS~et~l~~l-------~~v~d~~~El~ri~~E~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 508 (511) T protein:vir:96 448 --GKISQTTLMSLF-------SFFQDPELEVKKIEEDEKESIKKAQKGIYK---DPRDINDDEQDDDTKDTVD 508 (511) T ss_pred --ccCChHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHHHhhcccc---CCCCCCCCCCCCCccCccc Confidence 999999999876 33456677777777543332222 111111 1111112222233333333 No 24 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=4.4e-56 Score=324.08 Aligned_cols=470 Identities=13% Similarity=0.084 Sum_probs=312.1 Q ss_pred CCCChhhh-----hhhhHHhhcccC-------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc-cccccccC Q lcl|Aclame:pro 1 MGQDKRQY-----GSTQQLRAGEAN-------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE-GDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy-----~~~~~~~~~~~~-------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~~~~ 67 (527) .-.|..+| ...-.|.....+ +...|..+...|+.+|+.|.+||.|++..+....+..++ +...++-. T Consensus 13 ~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~ 92 (511) T protein:vir:78 13 LRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAH 92 (511) T ss_pred hhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCccccccCcccccccCcceeec Confidence 22222221 111111111111 112233345567788999999999998776544332222 22245566 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+-.+++.++++++.|..|+++++++.++.++.+.+.+.|.|+.++++|. .+ +|.|+.+ T Consensus 93 n~~k~Iv~~~~~yl-~g~p~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~d~-dg---~~~i~~~ 167 (511) T protein:vir:78 93 DYASYISDFINGYF-LGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQ-DD---ETRLYKS 167 (511) T ss_pred chHHHHHHHHhhhh-cccCceeecCchHHHHHHHHHHhhcChhHHHHHHHHHHHhcCeeEEEEEeCC-CC---ceEEEEE Confidence 88999999999999 8888888999999999999999999999999999999999999988888874 33 7888999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccc--cccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPG--KWDDRPES 225 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g--~wd~~~~~ 225 (527) +|.+.||++++...++++..--.|.....++... .. +.|...|.++. + .+|..+ +|.. T Consensus 168 ~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~~-~~----~~~~~vyt~~~-------i----~~~~~~~~~~~~---- 227 (511) T protein:vir:78 168 DAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTDE-DE----VFTVDLFTSHG-------V----YRYLTNRTNGLK---- 227 (511) T ss_pred cccceEEEEcCCCCCceEEEEEEEEeeecccccc-ce----EEEEEEEeCCc-------E----EEEEecCCCccc---- Confidence 9999999999877666444311221111121110 00 01111111111 0 011111 1110 Q ss_pred cccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccC Q lcl|Aclame:pro 226 PLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSA 305 (527) Q Consensus 226 ~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~ 305 (527) -...++...|+|++.||||.|+|. .+|.|+++++++|+|++|.++|+.+..++++++|+++++|. T Consensus 228 ----------~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~gd~e~v~~liDa~~~~~S~~~~~~~~~~~~~lv~~G~ 292 (511) T protein:vir:78 228 ----------LTPRENSFESHSFERMPITEFSNN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGN 292 (511) T ss_pred ----------ccccccccccCcCcccceEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcchhheecC Confidence 012235667999999999999985 47999999999999999999999999999999999999886 Q ss_pred CCcCC-CCcc----cceecCCCee-----EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 306 PPRDS-RGNM----VPWTISPLGM-----VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 306 ~~~d~-~G~~----~p~~v~pg~~-----~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) ...+. ..+. ..+.+.++.. ...++++.+..|....+.+++++|+++|.+.||.+|.+|.+.++.+. +. T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~--~n 370 (511) T protein:vir:78 293 LNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS--GT 370 (511) T ss_pred ccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc--cc Confidence 54332 1110 0111222221 12355677888887668999999999999999999999999998554 56 Q ss_pred ccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 376 ESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 376 ~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) +||.||+..|++|..|+.+|+..|+.+|.|+++ ++..++....+... ......++|+|.+.+|+|..++++.+++|. T Consensus 371 ~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~-li~~~~~~~~~~~~--~~~~~~i~~~f~~~~p~n~~e~~d~~~kl~ 447 (511) T protein:vir:78 371 QSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAK-LLETILKNTRSIDA--NKDFNTVRYVYNRNLPKSLIEELKAYIDSG 447 (511) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCcc--ccccccceEEeCCCCCcCHHHHHHHHHHHh Confidence 799999999999999999999999999999874 45555533222211 122335788999999999999999999884 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHh-cCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEA-ADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa-~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) |++|.+|++++| +..++.+++.+||++...++... ...++. ..++..+.+.+++..+... T Consensus 448 --G~iS~et~l~~l-------~~v~d~~~El~ri~~E~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 508 (511) T protein:vir:78 448 --GKISQTTLMSLF-------SFFQDPELEVKKIEEDEKESIKKAQKGIYK---DPRDINDDEQDDDTKDTVD 508 (511) T ss_pred --ccCChHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHHHhhcccc---CCCCCCCCCCCCCccCccc Confidence 999999999876 33456677777777543332222 111111 1111112222233333333 No 25 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=2.6e-56 Score=325.30 Aligned_cols=459 Identities=12% Similarity=0.102 Sum_probs=310.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc---cccccccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE---GDQRPIYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~---~~~~~~~~p~~~k~v~~~ 77 (527) |+--. .+.+-+-....+|+.+|+.|.+||.|.+. ++-. |... ....++-.+-+++||++. T Consensus 1 ~~t~~--------------d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~-i~~~--~~~~~~~~~~~~~~~n~~~~ivd~~ 63 (480) T protein:vir:78 1 MTTYH--------------EHVERLQGLLARDLPNLLEAEAYRNGTRR-LKTI--GIGAPPELAYLDVQPGWVATYLRTL 63 (480) T ss_pred CCCHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhcccc-chhc--ccccchhhhhhhhhcchHHHHHHHH Confidence 33211 11122222445789999999999999853 2111 1111 111223345689999999 Q ss_pred hhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecC--CCCCccceEEEEEccceEEEE Q lcl|Aclame:pro 78 MRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDD--EKDEGSRLSLHEVDPSTYFPY 155 (527) Q Consensus 78 ~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~--~k~~~~r~~i~~vdP~~~fp~ 155 (527) ++|| +..++ ....+++.++.|..|+++|+|+.++.++.+.+.+.|.|+.+|+-.. ......+++|+.++|.+.||+ T Consensus 64 ~~~l-~~~g~-~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~~i~~~~p~~~~~i 141 (480) T protein:vir:78 64 SDRL-DIEGF-RISEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIPLIRVESPLYMYAE 141 (480) T ss_pred Hhhh-ccCce-ecCCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCeeEEEEEcccceEEE Confidence 9999 32333 3445677888999999999999999999999999999987776320 001223788999999999999 Q ss_pred ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCcccee-eecccccccccccccccccccceee Q lcl|Aclame:pro 156 EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY-TEELYEPGKWDDRPESPLEPDDIKK 234 (527) Q Consensus 156 ~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~-~~~~~~~g~wd~~~~~~~~~~~~~~ 234 (527) +|+...++++..... |...++.+.. +|...+.+ +.+.+ ....-....|. T Consensus 142 ~D~~~~~~~~~~i~~--~~~~d~~~~~-------~~~~~y~~-------~~~~~~~~~~~~~~~~~-------------- 191 (480) T protein:vir:78 142 LDPRNTRRVTRAVRL--YTTRDDVAVP-------DRATLYLP-------DETVPLRRNGGLNDQWV-------------- 191 (480) T ss_pred EcCCCccceEEEEEE--EEeecCCcce-------EEEEEEeC-------CeEEEEEecCCCccccc-------------- Confidence 999877777776434 3333333211 11111111 11111 00000000111 Q ss_pred eccCcccccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcC--CC Q lcl|Aclame:pro 235 LSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRD--SR 311 (527) Q Consensus 235 ~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d--~~ 311 (527) .+.+..|+++++||||+|+|.+....+||.|+|++ +++|+|++|+++|+++.+++++++|++++.|....+ .+ T Consensus 192 ----~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~ 267 (480) T protein:vir:78 192 ----VDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTND 267 (480) T ss_pred ----ccccccccCCCCcceEEeecccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCccccccc Confidence 11345689999999999999988899999999996 999999999999999999999999999998876432 23 Q ss_pred CcccceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHH Q lcl|Aclame:pro 312 GNMVPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILS 390 (527) Q Consensus 312 G~~~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLla 390 (527) +....+...+|.||.++ ++.+|..++. +++.+|.++++.+...++.+++||..+||.. ..+..||.||+..+.+|+. T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~-~~n~~Sg~Al~~~~~~l~~ 345 (480) T protein:vir:78 268 GENTTLDIYYGRILTLASEAAKISEFKA-AELRNFAEEMEVFRKEAASITGLPPQYLSSS-SENPASAEAIIATDSRIVK 345 (480) T ss_pred cccchhhhhhhhhccCCCCCceEEecCc-cCHHHHHHHHHHHHHHHhcccCCCHHHhccc-cCchhHHHHHHHHHHHHHH Confidence 33344667788887754 6789999995 6899999999999999999999999999943 2244599999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcC--CccHHHHHHH Q lcl|Aclame:pro 391 SCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAG--LIPAKKLTEE 468 (527) Q Consensus 391 kv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aG--lls~~ta~~~ 468 (527) |+++||..|+.+|.|+++ ++.+++ +. ........++|+|.++.|+|..+.++++++|+++| ++|.+|++++ T Consensus 346 k~~~~~~~f~~~l~~~~r-l~~~~~----~~--~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~ 418 (480) T protein:vir:78 346 MAERKGRIFGGAWERAMR-IAMQIM----GR--EVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARID 418 (480) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHc----CC--CccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhc Confidence 999999999999999875 333333 21 11122345788999999999999999999999987 6899998887 Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHH-HHhcCccccc--ccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQATEDKKTQGIAQ-AEAADPFGAQ--MAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 469 L~~~g~~~~~e~~~~~~~e~~a~~a~~~-~aa~d~~g~~--~~~d~g~~d~~~~~~~~~~~~ 527 (527) | +++.+.++++.+..+.++.+- ....++...+ +..+.+..|..+..+..|..+ T Consensus 419 l------g~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (480) T protein:vir:78 419 L------GYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSGF 474 (480) T ss_pred C------CCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCccccCCCCCCCCCccCCCcccC Confidence 6 356666666543333222211 1222222111 112222233333334444555 No 26 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=1.3e-55 Score=321.57 Aligned_cols=449 Identities=12% Similarity=0.145 Sum_probs=309.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEee---ecCCccccc---ccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI---LRGGDEGDQ---RPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i---~~g~d~~~~---~~~~~p~~~k~v 74 (527) ++++... ...++.. .| .....|+.+|+.+.+||.|++.-+..- .++...... .++-.+-+++|| T Consensus 29 ~~~~~e~---~~~~i~~------~i-~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv 98 (483) T protein:vir:12 29 TNNKPET---LEEMIVR------YI-KQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLV 98 (483) T ss_pred cCCchhh---HHHHHHH------HH-HHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccchHHHHH Confidence 2222211 1111111 01 123567889999999999986422211 111111111 134567799999 Q ss_pred HhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEE Q lcl|Aclame:pro 75 EAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP 154 (527) Q Consensus 75 ~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp 154 (527) ++.++|| +|.+..+++.++++.+.|.+|++ ++++.++.++.+.+.+.|.|+.++++|. ++ +|.|+.++|.+.|| T Consensus 99 d~~~~~l-~G~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~y~~v~~d~-d~---~~~i~~~~p~~~~~ 172 (483) T protein:vir:12 99 DQKVSYI-VGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEWLHPYLDE-EG---EFKLFRVPAEQGIP 172 (483) T ss_pred HHHhhhh-cccCceeccCChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEEcC-CC---ceEEEEEcccceEE Confidence 9999999 88888889999999999999985 7899999999999999999998998885 33 78899999999999 Q ss_pred EecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceee Q lcl|Aclame:pro 155 YEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKK 234 (527) Q Consensus 155 ~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~ 234 (527) ++|+...+++++. +..|...+..........++.|-. ...+ .+... |. . T Consensus 173 v~d~~~~~~~~~~--ir~~~~~~~~~~~~y~~~~v~~~~--~~~~------~~~~~--------~~-------------~ 221 (483) T protein:vir:12 173 IWTDKEHEELEAF--IRMYKLENETKVEYWDKVTVNYYV--YENG------SLIPD--------YS-------------N 221 (483) T ss_pred EEcCCCCCceEEE--EEEEEeecceEEEEEecCeEEEEE--EeCC------eeeec--------cc-------------c Confidence 9998777777665 333554333221111111111100 0101 00000 00 0 Q ss_pred eccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcc Q lcl|Aclame:pro 235 LSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNM 314 (527) Q Consensus 235 ~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~ 314 (527) ....-+....+++++.||||.|+|. .+|+|+++++++|+|++|+++|+.+..++++++|+++++|....+. ++. T Consensus 222 ~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~-~~~ 295 (483) T protein:vir:12 222 NLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYDDQEL-PEF 295 (483) T ss_pred cccccccccccCCCCccceEEecCC-----CCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccc-hhH Confidence 0112223456899999999999994 4799999999999999999999999999999999999998764322 111 Q ss_pred cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHH Q lcl|Aclame:pro 315 VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAE 394 (527) Q Consensus 315 ~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~ 394 (527) . -.++...++++++++++..+....+.+.+++|+++|.+.||..|++|.+.++.. ++.+||.||+..|.+|..|+++ T Consensus 296 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~~l~~k~~~ 372 (483) T protein:vir:12 296 K-RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKF--GSAPSGVALEFLYTNLNLKADK 372 (483) T ss_pred H-HhhhhccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCcccc--ccCcHHHHHHHHHHHHHHHHHH Confidence 1 124556788899999999988777999999999999999999999999998744 4567999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcC Q lcl|Aclame:pro 395 QELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMG 474 (527) Q Consensus 395 krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~ 474 (527) |+..|+.+|.|+++-+ ..++ ++. .....++|+|.+.+|+|..++++.++++ +|++|.+|++++| T Consensus 373 ~~~~f~~~l~~~~~li-~~~~----~~~----~~~~~i~v~f~~~~p~~~~~~a~~~~kl--~GiiS~et~~~~~----- 436 (483) T protein:vir:12 373 LARKAKVAIQELLWFV-FEHF----DIK----GEHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENH----- 436 (483) T ss_pred HHHHHHHHHHHHHHHH-HHHh----cCC----CccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhC----- Confidence 9999999999987543 3333 221 2334578999999999999999999887 6999999999976 Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 475 FELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 475 ~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +..++.+++.+++++...+..-..+..... +.|++.++++.++.+.- T Consensus 437 --~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~-~~d~~~~~~~~~~~e~e 483 (483) T protein:vir:12 437 --PFVEDLQAELERIEQEQMEYNKQLPNLDDG-GADGAQQQERSNNKESE 483 (483) T ss_pred --CCCCCHHHHHHHHHHHHHHHHhhccccccc-ccCCcccCCCCCcccCC Confidence 335566777777765422222222222211 12222222222221111 No 27 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=2.7e-55 Score=319.77 Aligned_cols=459 Identities=13% Similarity=0.141 Sum_probs=319.4 Q ss_pred CCCChhhhhhhhHHhhcccCCC--------------------CCCC-------hHHHHHHHHHHHHHHHhcCChhheEee Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFP--------------------NAVT-------DFDKARLASYRLYEDMYLTNTSDYQVI 53 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~--------------------~~v~-------~~d~~Rl~aY~~~~~~y~~~~~~~~~i 53 (527) |-+..---..++.+++|++..- ..+. .....|+.+|+.+.+||.|++.-+..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~~~ 80 (492) T protein:vir:94 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) T ss_pred ChHHHHHHHHHHHHhcCCceeecCccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc Confidence 6555444445666666654321 1111 112457889999999999986432211 Q ss_pred ec--CCccccc----ccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEE Q lcl|Aclame:pro 54 LR--GGDEGDQ----RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYV 127 (527) Q Consensus 54 ~~--g~d~~~~----~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav 127 (527) .+ +....+. .++..|-+++||++.++|| +|.+-.+++.++++++.|..|++ ++++.++.++++.+.+.|.|+ T Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl-~G~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~a~~~G~a~ 158 (492) T protein:vir:94 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYI-VGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) T ss_pred ccccccccccccccccccccchHHHHHHHHHhhh-cccCceeccCchHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEE Confidence 11 1111111 1345677999999999999 87787888899999999999985 789999999999999999999 Q ss_pred EEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccc Q lcl|Aclame:pro 128 LLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAI 207 (527) Q Consensus 128 ~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i 207 (527) .++++|. ++ +|.++.++|.+.||++|+...++++.. +..|...+.........-++.+-. ...+ .+ T Consensus 159 ~~v~~d~-dg---~~~~~~~~p~~~~~v~d~~~~~~~~a~--ir~~~~~~~~~~~~y~~~~v~~~~--~~~~------~~ 224 (492) T protein:vir:94 159 LHPYLDE-EG---EFKLFRVPAEQGIPIWTDKEHEELEAF--IRMYKLENETKVEYWDKVTVNYYV--YENG------SL 224 (492) T ss_pred EEEEecC-CC---ceEEEEEcccceEEEEcCCCCCceEEE--EEEEeeccceeEEEEecCeEEEEE--EecC------ee Confidence 8998874 33 788899999999999998777777664 333554433211111111111100 0000 00 Q ss_pred eeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHH Q lcl|Aclame:pro 208 KYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTD 287 (527) Q Consensus 208 ~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd 287 (527) . ++ ........+++..|++++.||||.|+|. .+|.|+++++++|+|++|+++|+ T Consensus 225 ~----------~~-----------~~~~~~~~~~~~~~~~~g~vPvv~~~nn-----~~~~sd~e~v~~liDa~d~~~S~ 278 (492) T protein:vir:94 225 I----------PD-----------YSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSD 278 (492) T ss_pred e----------ec-----------cccccccccccccccCCCccceEEecCC-----CCCCCchHHHHHHHHHHHHHHHH Confidence 0 00 1111122334567899999999999995 37999999999999999999999 Q ss_pred HHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhc Q lcl|Aclame:pro 288 EDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAV 367 (527) Q Consensus 288 ~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~ 367 (527) .+.+++++++|++++.|....+. ++. .-.++...++.+++++.+..+....+.++++.|+++|.+.||..|.+|.+.+ T Consensus 279 ~~~~~~~~~~p~lv~~g~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~ 356 (492) T protein:vir:94 279 LSNTFKDSNELTYVLKNYDDQEL-PEF-KRLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS 356 (492) T ss_pred HHHHHHHhcCceeeeecCCcccc-hhh-HHHHhhccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCcCCCc Confidence 99999999999999999764332 111 1124556788899999998888777999999999999999999999999988 Q ss_pred ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHH Q lcl|Aclame:pro 368 GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKR 447 (527) Q Consensus 368 G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~ 447 (527) +.. ++.+||.||+..+++|..|+++|+..|+.+|.|+++.+ ..++ ++. .....+.|+|.+.+|+|.+++ T Consensus 357 ~~~--~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li-~~~~----~~~----~~~~~i~v~f~~~~p~~~~e~ 425 (492) T protein:vir:94 357 DKF--GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFV-FEHF----DIK----GEHKDVDISFNYNKVANTELQ 425 (492) T ss_pred ccc--ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----cCC----cccceeeEEecCCCCCCHHHH Confidence 744 35679999999999999999999999999999987543 3332 221 123457889999999999999 Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 448 FAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 448 i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ++.+++| +|++|.+|++++| +..++.+++.+++++...+........+.. ..|++..+++..+.++- T Consensus 426 ~~~~~kl--~giiS~et~~~~l-------~~v~d~~~E~eri~~E~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~e 492 (492) T protein:vir:94 426 VQTAQQS--MGIVSHETVLENH-------PFVEDLQAELERIEQEQMEYNKQLPNLDDG-GADSAQQQERSNNKESE 492 (492) T ss_pred HHHHHHH--hccCchHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHhhccccccc-cCCCCccccCCccccCC Confidence 9999887 4999999999976 334556677777765322222222222222 22333334444444444 No 28 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=7.7e-56 Score=322.75 Aligned_cols=461 Identities=13% Similarity=0.088 Sum_probs=307.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCC-cccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGG-DEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~-d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |+= +.....-+-....+|+.+|.+|.+||.|.+. ++-.-+.- .+....++-.+-+++||++.++ T Consensus 1 ~~t--------------~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~-i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~ 65 (480) T protein:vir:78 1 MTT--------------YHEHVERLQGLLARDLPNLLEAEAYRNGTRR-LKTIGIGAPPELAYLDVQPGWVATYLRTLSD 65 (480) T ss_pred CCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccccchhHhhhhhhcchHHHHHHHHHh Confidence 321 1111111222345688999999999999863 32221110 1111122344568999999999 Q ss_pred hhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecC--CCCCccceEEEEEccceEEEEec Q lcl|Aclame:pro 80 FLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDD--EKDEGSRLSLHEVDPSTYFPYED 157 (527) Q Consensus 80 ~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~--~k~~~~r~~i~~vdP~~~fp~~d 157 (527) || +..+ +....+++.++.|..|+++++|+.++.++.+++.+-|.|+.+|+-+. ...+..+++|+.++|.++|+++| T Consensus 66 ~l-~~~g-~~~~~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~~i~~~~p~~~~~~~D 143 (480) T protein:vir:78 66 RL-DIEG-FRISEDSEGLEELWNWWQANDLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIPLIRVESPLYMYAELD 143 (480) T ss_pred hh-ccCc-eecCCCchhHHHHHHHHHhcCHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCeeEEEEEcccceEEEEc Confidence 99 3222 34445777888999999999999999999999999999987776321 01122378899999999999999 Q ss_pred CCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCcccee-eecccccccccccccccccccceeeec Q lcl|Aclame:pro 158 PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY-TEELYEPGKWDDRPESPLEPDDIKKLS 236 (527) Q Consensus 158 ~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~-~~~~~~~g~wd~~~~~~~~~~~~~~~~ 236 (527) +...++++..... |...++.+. +.+...| .+ +.+.+ +...-....|.. T Consensus 144 ~~~~~~~~~~i~~--~~~~~~~~~---~~~~~~y----~~-------~~~~~~~~~~~~~~~~~~--------------- 192 (480) T protein:vir:78 144 PRNTRRVTRAVRL--YTTRDDVAV---PDRATLY----LP-------DETVPLRRNGGLNDQWVV--------------- 192 (480) T ss_pred CCCccceEEEEEE--EEeecCCCc---eEEEEEE----eC-------CeEEEEEecCCCcccccc--------------- Confidence 9878888776444 333333321 1122122 11 11111 110000111111 Q ss_pred cCcccccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcC--CCCc Q lcl|Aclame:pro 237 TLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRD--SRGN 313 (527) Q Consensus 237 ~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d--~~G~ 313 (527) +.+..++++++||||+|+|.+....+||.|+|++ +++|+|++|+++|+.+.+++++++|.+++.|..+.+ .++. T Consensus 193 ---~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~ 269 (480) T protein:vir:78 193 ---DGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGE 269 (480) T ss_pred ---ccccccCCCCCcceEEeecccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccccc Confidence 1234689999999999999988899999999996 999999999999999999999999999998876432 2223 Q ss_pred ccceecCCCeeEec-CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHH Q lcl|Aclame:pro 314 MVPWTISPLGMVEH-GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSC 392 (527) Q Consensus 314 ~~p~~v~pg~~~el-~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv 392 (527) ...+...+|.+|.+ +++.+|.+++. +++.+|.++++.+...++.+++||...||... .+..||.||+..+.+|+.|+ T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~-~n~~Sg~Alk~~~~~l~~ka 347 (480) T protein:vir:78 270 NTTLDIYYGRILTLASEAAKISEFKA-AELRNFAEEMEVFRKEAASITGLPPQYLSSSS-ENPASAEAIIATDSRIVKMA 347 (480) T ss_pred cchhhhhhhhhccCCCCCceEEecCc-cCHHHHHHHHHHHHHHHhcccCCChHHhcccc-CcchHHHHHHHHHHHHHHHH Confidence 33466778888775 57789999994 68999999999999999999999999999532 24459999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcC--CccHHHHHHHHH Q lcl|Aclame:pro 393 AEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAG--LIPAKKLTEELS 470 (527) Q Consensus 393 ~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aG--lls~~ta~~~L~ 470 (527) ++||..|+.+|.|+++. +.+++ +.. .......++|+|.++.|+|..+.++++++|+++| ++|.+|++++| T Consensus 348 ~~~~~~f~~~l~~~~~l-~~~~~----g~~--~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l- 419 (480) T protein:vir:78 348 ERKGRIFGGAWERAMRI-AMQIM----GRE--VTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDL- 419 (480) T ss_pred HHHHHHHHHHHHHHHHH-HHHHc----CCC--ccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcC- Confidence 99999999999998753 33332 211 1122345678999999999999999999999987 79999999876 Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHHHH-HhcCcc--ccccc--ccCCCCcccccccCCCCCC Q lcl|Aclame:pro 471 KIMGFELTEEDFRQATEDKKTQGIAQA-EAADPF--GAQMA--AEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 471 ~~g~~~~~e~~~~~~~e~~a~~a~~~~-aa~d~~--g~~~~--~d~g~~d~~~~~~~~~~~~ 527 (527) +++.++++++.+..+.++.+.. ....+. .++.. ++.|..-.++++..+|..= T Consensus 420 -----g~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (480) T protein:vir:78 420 -----GYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSGFNR 476 (480) T ss_pred -----CCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCCCCccccccCCCCc Confidence 3555555554433332222111 111111 10101 1111111122222222222 No 29 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=100.00 E-value=7.2e-55 Score=317.40 Aligned_cols=449 Identities=12% Similarity=0.111 Sum_probs=305.4 Q ss_pred CChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc--------------ccccccCC Q lcl|Aclame:pro 3 QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG--------------DQRPIYVP 68 (527) Q Consensus 3 ~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~--------------~~~~~~~p 68 (527) .+..+ ....+... + .....|+..|..+.+||.|++.-++.-..-.... .-.++-.| T Consensus 1 ~~~e~---~~~~i~~~------~-~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n 70 (471) T protein:vir:10 1 MEIEV---IKKIISSQ------M-VKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHN 70 (471) T ss_pred CCHHH---HHHHHHHH------H-HHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccc Confidence 12111 11111111 1 2345688899999999999864433211100000 01135566 Q ss_pred chhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) -+++||++.++|| +|.+-.++++++++++.|..|++ ++++.++.++.+.+.+.|+|+.++++|+..+ ++.++.++ T Consensus 71 ~~~~Ivd~~~~yl-~G~p~~~~~~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g---~~~~~~~~ 145 (471) T protein:vir:10 71 WHQLLLDQKKAYA-LTYPPTFDVDDKKVNDMIVDVLG-DDYERISKQLCVNAGNAGIAWLHVWKDASDN---SFRYACVD 145 (471) T ss_pred hhHHHHHhhhhhh-cccCceeccCChHHHHHHHHHHh-cCHHHHHHHHHHHHhhCCeEEEEEEeeCCCC---eeEEEEEc Confidence 7999999999999 88888889999999999999986 7899999999999999999999999997655 88899999 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccc-ccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEP-GKWDDRPESPL 227 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~-g~wd~~~~~~~ 227 (527) |.+.||++++...++++.+--.|......+.....++. .|.+++.. +|.- +++........ T Consensus 146 p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~-------vy~~~~~~-----------~y~~~~~~~~~~~~~~ 207 (471) T protein:vir:10 146 SKEVIPIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYE-------YWNDKECS-----------FYRHEKEKPLEELETF 207 (471) T ss_pred ccceEEEEcCCCCCceEEEEEEEEeeccCCCceeEEEE-------EEeCCcEE-----------EEEecCCccccccccc Confidence 99999999987776655441122222222222111111 11111110 0000 00000000000 Q ss_pred cccc-eeee-ccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccC Q lcl|Aclame:pro 228 EPDD-IKKL-STLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSA 305 (527) Q Consensus 228 ~~~~-~~~~-~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~ 305 (527) .... .... ....++...+++++.||||+|+|. .+|.|+++++++|+|++|.++|+.+.+++++++|+++++|. T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~-----~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~ 282 (471) T protein:vir:10 208 QAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKNN-----EIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNY 282 (471) T ss_pred ccccccccccccccccccccCCCCceeEEEeccC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecC Confidence 0000 0000 122345678999999999999995 46899999999999999999999999999999999999997 Q ss_pred CCcCCCCcccceecCCCeeEecC-----CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH Q lcl|Aclame:pro 306 PPRDSRGNMVPWTISPLGMVEHG-----QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) Q Consensus 306 ~~~d~~G~~~p~~v~pg~~~el~-----~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A 380 (527) ...+ .++.. ..+..+.++.++ .++++..|....+.+++++|+++|.+.|+..|+||.+.++.+ +..||.| T Consensus 283 ~~~~-~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~---gn~Sg~A 357 (471) T protein:vir:10 283 GGQD-KQEFL-EDLKRYKMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETDKL---GNSSGVA 357 (471) T ss_pred Cccc-cchhH-HHhhcCCeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCcccc---cCccHHH Confidence 5322 12211 123345555554 345777777666899999999999999999999999988744 3469999 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) |+.+|++|..|+++||..|+.+|.|+++ ++..++.. .....+.|+|.+.+|+|..++++.++++ +|++ T Consensus 358 lk~~~~~l~~k~~~~~~~~~~~l~~~~~-li~~~~~~---------~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~i 425 (471) T protein:vir:10 358 LKFLYSLLELKAGNMETQFRSGYATLVK-MILKHLGL---------SDKLKIKQTWTRNSINNDTEMAQVVSTL--ATIT 425 (471) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcc---------CCCceeEEEeCCCCCCCHHHHHHHHHHH--hccC Confidence 9999999999999999999999988874 44444422 1234578999999999999999999887 6999 Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) |.+|++++| |.+++.+++.+++++...+++..... -.++.+|.+-+ T Consensus 426 S~et~~~~~-------p~v~D~~~E~eri~~E~~~~~~~~~~------~~~~~~~~e~~ 471 (471) T protein:vir:10 426 SRENVAKSN-------PIVEDWQDELRLQKAEQEGRSEKLYD------MEEVEHESEVE 471 (471) T ss_pred chHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHhcccc------cCCCCCccccC Confidence 999999976 44567788888887643322221111 12233333333 No 30 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=2e-55 Score=320.42 Aligned_cols=471 Identities=13% Similarity=0.087 Sum_probs=312.7 Q ss_pred CCCChhhh-----hhhhHHhhcccC-------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc-cccccccC Q lcl|Aclame:pro 1 MGQDKRQY-----GSTQQLRAGEAN-------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE-GDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy-----~~~~~~~~~~~~-------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~~~~ 67 (527) .-.|..+| ...-.|....-+ +...|..+..+|+.+|+.|.+||.|.+..+....+..++ +...++-. T Consensus 13 ~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~ 92 (511) T protein:vir:96 13 LRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTRRKEEYMADNRVAH 92 (511) T ss_pred hhhhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCcCcccccCcceeec Confidence 11222111 111111111111 112233445677889999999999998776544333222 22234556 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-+++||++.++|| +|.+-.+++.++++++.|..|++.+++..++.++.+.+.+.|.|+.++++|. .+ +|.|+.+ T Consensus 93 n~~k~Iv~~~~~yl-~g~p~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~i~G~a~~~vy~de-d~---~~~i~~~ 167 (511) T protein:vir:96 93 DYASYISDFINGYF-LGNPIQYQDDDKDVLEAIEAFNDLNDVESHNRSLGLDLSIYGKAYELMIRNQ-DD---ETRLYKS 167 (511) T ss_pred chHHHHHHHHHhhh-ccCCceeecCchHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeeEEEEEeCC-CC---ceEEEEE Confidence 77999999999999 8888888999999999999999999999999999999999999988888874 23 7888999 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|.+.||++++...++++..--.|.....++...... .|...|.++. |.. +...-++|.. T Consensus 168 ~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~~~~~-----~~~~iyt~~~-------i~~--~~~~~~~~~~------ 227 (511) T protein:vir:96 168 DAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTDEDEV-----FTVDLFTSHG-------VYR--YLTSRTNGLK------ 227 (511) T ss_pred ccceeEEEEcCCCCCceEEEEEEEEeeeccccccceE-----EEEEEEeCCc-------EEE--EEecCCCccc------ Confidence 9999999998877666554322222222222211110 1111111111 000 0000011110 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) ....++...|+|++.||||.|+|. .+|.|+++++++|+|++|.++|+.+..+++++.|+++++|... T Consensus 228 --------~~~~~~~~~~~~~~~vPvv~~~nn-----~~g~gd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~ 294 (511) T protein:vir:96 228 --------LTPRENGFESHSFERMPITEFSNN-----ERRKGDYEKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLN 294 (511) T ss_pred --------ccccccccccccCCceeeEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCcc Confidence 012234567999999999999995 4799999999999999999999999999999999999998654 Q ss_pred cCC-C------Cccc---ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccccc Q lcl|Aclame:pro 308 RDS-R------GNMV---PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) Q Consensus 308 ~d~-~------G~~~---p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~S 377 (527) .+. . +.+. +.....+.....++++++..|....+.+++++|+++|.+.||..|.+|.+.++.+. +.+| T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~--~n~S 372 (511) T protein:vir:96 295 LDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFS--GTQS 372 (511) T ss_pred CCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccc--ccch Confidence 332 1 1110 11122233344567788888887778999999999999999999999999998553 5679 Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 378 GIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 378 G~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) |.||+..+++|..|+.+|+..|..+|.|+++ ++..++....+.. .......++|+|.+.+|+|.+++++.++++ + T Consensus 373 g~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~-li~~~~~~~~~~~--~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~ 447 (511) T protein:vir:96 373 GEAMKYKLFGLEQRTKTKEGLFTKGLRRRAK-LLETILKNTWSID--ANKDFNTVRYVYNRNLPKSLIEELKAYIDS--G 447 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCcc--cccccccceEEeCCCCCCCHHHHHHHHHHH--h Confidence 9999999999999999999999999999874 4555542211111 112334578899999999999999999887 7 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHh--cCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEA--ADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa--~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) |++|.+|++++| +..++.+++.+|++....++... .++.......+ +++.+++..+++- T Consensus 448 G~iS~et~l~~l-------~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 508 (511) T protein:vir:96 448 GKISQTTLMSLF-------SFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDIN----DDEQDDDTKDTVD 508 (511) T ss_pred ccCChHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCC----CCCCCCccccccc Confidence 999999999876 22445566666666543222211 12211111122 2222222222222 No 31 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=2.7e-55 Score=319.75 Aligned_cols=425 Identities=14% Similarity=0.162 Sum_probs=298.3 Q ss_pred CChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhhhc Q lcl|Aclame:pro 3 QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLG 82 (527) Q Consensus 3 ~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg 82 (527) .+++- . +.+-...+.|+.+|+.+.+||.|.+.-++.-....... -.++-.|-+++||++.++|| T Consensus 1 l~~~~---l-----------~~~i~~~~~~~~r~~~l~~yy~g~~~il~~~~~~~~~~-~~ki~~n~~~~ivd~~~~~l- 64 (429) T protein:vir:98 1 MTKDL---L-----------SELIQKHRSFNLSYSAYKQLYEGDHAILQQKQKEQYKP-DNRLVVNFAKYIVDTFNGYF- 64 (429) T ss_pred CCHHH---H-----------HHHHHHHHHHHHHHHHHHHHhccccccccccccccCCC-cceeecchHHHHHHHHhhhh- Confidence 11111 1 11112446788999999999999864332222111111 13455667899999999999 Q ss_pred cCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCC Q lcl|Aclame:pro 83 QGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPG 162 (527) Q Consensus 83 ~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~ 162 (527) +|.+..+++.++++++.|..|+++++++.++.+++|.+++.|+|+.+++.|. ++ +|.++.++|.+.||++++...+ T Consensus 65 ~g~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g---~~~~~~~~p~~~~~v~dd~~~~ 140 (429) T protein:vir:98 65 IGVPVQTSHENKQVSNYLELLDGYNDQDDNNAELSKICSIYGHGYELVFNDE-NA---EAGITYLTPLEAFIVYDDSIRQ 140 (429) T ss_pred cccCceeecCChHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEecC-CC---cEEEEEEcccceEEEEeCCCCC Confidence 7778888899999999999999999999999999999999999998888874 34 7888999999999999876665 Q ss_pred ceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccc Q lcl|Aclame:pro 163 QVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEE 242 (527) Q Consensus 163 ~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~ 242 (527) +++.. +..|..++.. .+..| +.. ..+. .|..+++ ....++ T Consensus 141 ~~~~~--i~~~~~~~~~-------~~~~~---~~~-------~~~~----~~~~~~~-----------------~~~~~~ 180 (429) T protein:vir:98 141 KPLFA--VRYFYNKGGV-------LEGSY---SDA-------SNIT----YFKDGEK-----------------GIEIGE 180 (429) T ss_pred ceEEE--EEEEEecCce-------EEEEE---EeC-------ceEE----EEEecCC-----------------ceEecc Confidence 55443 2224333211 01111 000 0000 1110000 011234 Q ss_pred cccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCC Q lcl|Aclame:pro 243 PLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPL 322 (527) Q Consensus 243 ~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg 322 (527) .-|+|+++||||+|+|. ++|+|+++++++|+|++|+++|+.+.++++++.|+++++|....+...+ ....+ T Consensus 181 ~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~~~~~~~~~----~~~~~ 251 (429) T protein:vir:98 181 SEPHPFDGVPMIEYVEN-----EERQSLLASVVTLINAFNKAISEKANDVEYFADAYLKILGAELDDETLK----SLRDT 251 (429) T ss_pred cccccCCccceEEecCC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCCCcchhh----hHhhC Confidence 56899999999999994 4799999999999999999999999999999999999998764332111 23345 Q ss_pred eeEecCC----CCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 323 GMVEHGQ----NNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELE 398 (527) Q Consensus 323 ~~~el~~----~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~ 398 (527) .||.+++ ++.++.+....+.+.+++|+++|.+.|+..|++|.+.++.. +..||.||+.++++|..|+++||.. T Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~---gn~Sg~Al~~~~~~l~~k~~~~~~~ 328 (429) T protein:vir:98 252 RIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVANISDESF---GTASGIALRYRLQAMDNLAKTKERK 328 (429) T ss_pred ceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccc---ccchHHHHHHHHHHHHHHHHHHHHH Confidence 6666643 34677776666889999999999999999999999887643 3469999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCc Q lcl|Aclame:pro 399 LKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELT 478 (527) Q Consensus 399 ~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~ 478 (527) |+.+|.|+++.+ ..++ +.... ......++|+|.+.+|+|..++++.+++| +|++|.+|++++| + . T Consensus 329 ~~~~l~~~~~li-~~~~----~~~~~-~~d~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~~~~l---~----~ 393 (429) T protein:vir:98 329 FMSGMNRRYKLI-ASYP----TSKIG-PKDWIGIKYKFTRNLPANLLEESQIAGNL--AGIVSEETQVGVL---S----I 393 (429) T ss_pred HHHHHHHHHHHH-HHHh----ccCCC-ccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhC---C----C Confidence 999999987443 3333 22222 22344578899999999999999999887 7999999999887 2 3 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 479 EEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 479 e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) .++.+++.++++... .++.+.......++++..|.+ T Consensus 394 v~d~~~E~~ri~~E~---~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 394 VENPQKEIERKNSDK---STLISRQAGGLNGQNTTTILE 429 (429) T ss_pred CCCHHHHHHHHHHHH---HHHHHHHHhhhcCCCCCCCCC Confidence 445667777776532 222222221222222222222 No 32 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=1.2e-54 Score=316.22 Aligned_cols=461 Identities=11% Similarity=0.086 Sum_probs=310.0 Q ss_pred CCCChhhhhhhhH--Hhhc---ccCCC----CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc---ccc---ccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQ--LRAG---EANFP----NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE---GDQ---RPI 65 (527) Q Consensus 1 m~~~~~qy~~~~~--~~~~---~~~~~----~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~---~~~---~~~ 65 (527) |-=..+-+..+.. ++.. .+... .-.......|+.+|+.+.+||.|++.-+......... ... .++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki 80 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGDYDETKPDWRM 80 (478) T ss_pred CccccccCCchhhhHHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhccccccccccccee Confidence 3322222222211 2222 11100 1122255678999999999999987544332211110 001 123 Q ss_pred cCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEE Q lcl|Aclame:pro 66 YVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLH 145 (527) Q Consensus 66 ~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~ 145 (527) -.|-+++||++.++|| +|.+-.+++.++++++.|..|++ ++++.++.++.+.+.+.|.++.++++|. .+ ++.+. T Consensus 81 ~~n~~k~ivd~~~~yl-~g~p~~~~~~~~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~---~~~~~ 154 (478) T protein:vir:10 81 YTNYHQNLVDQKVAYA-VANPVTFGVDNDKALKQIQHTLN-HKWDDKLVDILTAASNKGIEWVQPYVDE-EG---EFKTF 154 (478) T ss_pred ccchHHHHHHHHhhhh-cccCceeecCChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEEEecC-CC---ceEEE Confidence 4677899999999999 77787888999999999999986 8899999999999999999998998885 33 78889 Q ss_pred EEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccc Q lcl|Aclame:pro 146 EVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPES 225 (527) Q Consensus 146 ~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~ 225 (527) .++|.+.||++++...++++.+.. .|...+..........++.+ +...++.. . |+.... T Consensus 155 ~~~p~~~~~v~d~~~~~~~~~~ir--~~~~~~~~~~~~y~~~~i~~--~~~~~~~~------~----------~~~~~~- 213 (478) T protein:vir:10 155 RVPAEQAVPIWTNKERDELQAFIR--VYELDGAERVEYWTKDDVTF--YELKEGQL------I----------PDFYRS- 213 (478) T ss_pred EEcccceEEEEcCCCCCceEEEEE--EEeeeCceEEEEEeCCcEEE--EEecCCee------e----------cccccc- Confidence 999999999999887777776532 34433222111111111111 01111111 0 000000 Q ss_pred cccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccC Q lcl|Aclame:pro 226 PLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSA 305 (527) Q Consensus 226 ~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~ 305 (527) .............+++++.||||+|+|. ..|.|+++++++|+|++|+++|+.+..+++++.|+++++|. T Consensus 214 ------~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~ 282 (478) T protein:vir:10 214 ------EDHIQPHYYQGNKLMSWGRVPFIPFKNN-----PQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGY 282 (478) T ss_pred ------ccccccceecccccccCCcceEEEeccC-----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecC Confidence 0000111223456899999999999995 36999999999999999999999999999999999999997 Q ss_pred CCcCCCCcccceecCCCeeEec--CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHH Q lcl|Aclame:pro 306 PPRDSRGNMVPWTISPLGMVEH--GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDL 383 (527) Q Consensus 306 ~~~d~~G~~~p~~v~pg~~~el--~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql 383 (527) ...+. ++. ...+....++.+ ++++.+..+....+.+++++|+++|.+.|+..|++|.+.++.+ ++.+||.||+. T Consensus 283 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~Ai~~ 358 (478) T protein:vir:10 283 EGEDM-KDF-MHNLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKF--GNSPSGIALKF 358 (478) T ss_pred Ccccc-cch-hhhhhhCceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCcccc--ccchHHHHHHH Confidence 64332 121 112333334444 4567888888777999999999999999999999999988754 35679999999 Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHH Q lcl|Aclame:pro 384 KLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAK 463 (527) Q Consensus 384 ~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ 463 (527) .|++|.+|+++|+..|..++.|+++-+ ..++ +. ......+.|+|.+.+|+|..+.++.++++ +|++|.+ T Consensus 359 ~~~~l~~k~~~~~~~~~~~l~~~~~li-~~~~----~~----~~d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~iS~e 427 (478) T protein:vir:10 359 MYSNLDLKANKLKNKTLTALQELLQYI-IDFY----RL----DVRVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKE 427 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----CC----CcccccceEEeCCCCCCCHHHHHHHHHHH--hCCCChH Confidence 999999999999999999998887543 3332 22 12334578999999999999999988766 7999999 Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 464 KLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 464 ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) |++++| |..++.+++.+++++.... .+..-+......+|+-.+.+.+++.+ T Consensus 428 t~i~~~-------~~v~d~~~E~~ri~~E~~~-~~~~~~~~~~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 428 TILGNH-------SWVQDPVAEMERIEQENIE-LNQQLPDIEEGLNDEQQRQSEDNQSE 478 (478) T ss_pred HHHHhC-------CCCCCHHHHHHHHHHHHHH-HHHhccccCCCCcccccccCcCCCCC Confidence 999876 3345667777777654222 22122222222343333444555555 No 33 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=100.00 E-value=7.4e-55 Score=317.34 Aligned_cols=459 Identities=12% Similarity=0.076 Sum_probs=303.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhhe-EeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDY-QVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~-~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) +-|+...+..... ...+-+...|..+...|+.+|+.|.+||.|++..+ +.-.+-+......++..|-+++||++.++ T Consensus 26 ~~~~~~~~~~~~~--~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~ 103 (501) T protein:vir:96 26 IRYRADNLEELMV--NNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGRRKDNEMADKRAVHNYGRMISKFKTG 103 (501) T ss_pred hhhcccccccccC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCccccCccccccceeecchHHHHHHHHhh Confidence 2222222211100 00000112344456678889999999999975442 11111111111234678889999999999 Q ss_pred hhccCccccccCc----chhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEE Q lcl|Aclame:pro 80 FLGQGLKWEFSKK----DAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPY 155 (527) Q Consensus 80 ~Lg~~~~~~i~~~----~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~ 155 (527) || +|.+..+++. ++.+++.|..|++.++|+.++.++.+++.+.|.|+.++++|. .+ +|.|+.++|...||+ T Consensus 104 yl-~g~p~~~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~de-dg---~~~i~~~~p~~~~~v 178 (501) T protein:vir:96 104 YL-AGNPIRVEYDDNDDNSQNDDAIKRIGRINDLDSLNRTLIRDLSQTGRAYEVIYRSE-YD---ETRIKRLSPLETFVI 178 (501) T ss_pred hh-cccCeeEeeCCccchhHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcC-CC---ceEEEEEccceeEEE Confidence 99 6666665554 355788999999999999999999999999999999999884 23 788999999999999 Q ss_pred ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeee Q lcl|Aclame:pro 156 EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKL 235 (527) Q Consensus 156 ~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~ 235 (527) +|+...+++++.-.. |...++.... +|...+.++. |. +| . .- T Consensus 179 ~d~~~~~~~~~~v~~--~~~~~~~~~~-------~~~~vyt~~~-------i~----~~-----~-------------~~ 220 (501) T protein:vir:96 179 YDNSLEDNSIAAVRY--YNRGTLQSAK-------DVVEIYTDEH-------IY----TL-----D-------------AS 220 (501) T ss_pred EcCCCCCceEEEEEE--EEeecCCCcE-------EEEEEEcCCc-------EE----EE-----e-------------eC Confidence 998776666554222 4332222211 1111111110 00 11 0 00 Q ss_pred ccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC--CCc Q lcl|Aclame:pro 236 STLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS--RGN 313 (527) Q Consensus 236 ~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~--~G~ 313 (527) ....++...|++++.||||+|+|. ++|.|+++++++|+|++|+++|+.+..+++++.|++++.|....+. .+. T Consensus 221 ~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 295 (501) T protein:vir:96 221 DDFNEISVTTHAFGTVPITEYLNN-----IDGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPKGMQAS 295 (501) T ss_pred CCceeccccccCCCccceEEecCC-----ccCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecccccCcccchh Confidence 011234556899999999999985 4799999999999999999999999999999999999998754321 111 Q ss_pred cc----ceec-CCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccH Q lcl|Aclame:pro 314 MV----PWTI-SPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAI 388 (527) Q Consensus 314 ~~----p~~v-~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PL 388 (527) -. -+.+ .++.......++++..|....+.+++++|+++|.+.|+..|++|.+.+|.. ++.+||.||+..+++| T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~Al~~~~~~l 373 (501) T protein:vir:96 296 DMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTPDMSDTNF--SGNTSGEALKYKLFGL 373 (501) T ss_pred hhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCcccCcccc--cccchHHHHHHHHHHH Confidence 10 1112 233333455667888888777889999999999999999999999999855 3567999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH Q lcl|Aclame:pro 389 LSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEE 468 (527) Q Consensus 389 lakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~ 468 (527) ..|+.+++..|+.++.|+++ ++..++..- ..........++|+|.+.+|+|.+++++.+++| +|++|.+|++++ T Consensus 374 ~~ka~~~~~~~~~~l~~~~~-li~~~~~~~---~~~~~~d~~~i~i~f~~~~p~n~~e~ad~~~kl--~g~iS~et~~~~ 447 (501) T protein:vir:96 374 DQDRVDTQSQFTKGLKRRYR-LAARIGSLV---NEFKDFDESLLKITFTPNLPKSLNEQVSILTGL--GGQVSQETALSL 447 (501) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhc---ccccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHh Confidence 99999999999999998874 444443221 111112233478999999999999999999888 489999999997 Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccc-----cccCCCCcccccccCCCCC Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQM-----AAEQGIPDEEDDQALNGQP 526 (527) Q Consensus 469 L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~-----~~d~g~~d~~~~~~~~~~~ 526 (527) | +..++.+++.+++++... .+..+..-... ..++...|.+.|+.++-.- T Consensus 448 l-------~~v~D~~~E~~ri~~E~~--~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~e~~~~ 501 (501) T protein:vir:96 448 S-------GLVESPNEELDKINKEMS--EIDFKGYSNDFNEHVGKYTDEVKETHTDDFEREYE 501 (501) T ss_pred C-------CCCCCHHHHHHHHHHHHH--HhhccccccchhhcccccCCcCCCCCCCccccccC Confidence 6 234556677777764322 11111111111 1111112223333333333 No 34 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=2.4e-54 Score=314.56 Aligned_cols=458 Identities=13% Similarity=0.132 Sum_probs=317.6 Q ss_pred CCCChhhhhhhhHHhhcccCCC--------------------CCCC-------hHHHHHHHHHHHHHHHhcCChhheEee Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFP--------------------NAVT-------DFDKARLASYRLYEDMYLTNTSDYQVI 53 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~--------------------~~v~-------~~d~~Rl~aY~~~~~~y~~~~~~~~~i 53 (527) |-+..---..++.+++|++..- ..+. .....|+.+|+.+.+||.|++.-+..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~ 80 (492) T protein:vir:97 1 MQFIQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEP 80 (492) T ss_pred ChHHHHHHHHHHHHhcCCceeeccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccc Confidence 5555444445555565554311 1111 123457889999999999986432211 Q ss_pred ---ecCCccccc---ccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEE Q lcl|Aclame:pro 54 ---LRGGDEGDQ---RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYV 127 (527) Q Consensus 54 ---~~g~d~~~~---~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav 127 (527) .+++..... .++-.+-+++||++.++|| +|.+..+++.++++.+.|.+|++ ++++.++.++.+.+.+.|.|+ T Consensus 81 ~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl-~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~a~ 158 (492) T protein:vir:97 81 KPVDATGAVDPLKPDDRMITNFHANLVDQKVSYI-VGKPIAFKHTDDEVVKRIDEVLG-NRFDDKLHSVLTGASNKGIEW 158 (492) T ss_pred ccccccccccccccccccccchHHHHHHHHhhhh-cccCceeccCchHHHHHHHHHHh-ccHHHHHHHHHHHHhhcCeEE Confidence 111111111 1344677999999999999 88888888999999999999985 789999999999999999988 Q ss_pred EEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccc Q lcl|Aclame:pro 128 LLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAI 207 (527) Q Consensus 128 ~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i 207 (527) .+++.|. ++ ++.++.++|.+.||++|+...+++++. +..|...+..........+++|-.. ..+ .+ T Consensus 159 ~~v~~d~-dg---~~~~~~~~p~~~~~i~d~~~~~~~~~~--vr~~~~~~~~~~~~y~~~~v~~~~~--~~~------~~ 224 (492) T protein:vir:97 159 LHPYLDE-EG---EFKLFRVPAEQGIPIWTDKEHEELEAF--IRMYKLENETKVEYWDKVTVNYYVY--ENG------SL 224 (492) T ss_pred EEEEecC-CC---ceEEEEEcccceEEEEcCCCCCceEEE--EEEEeeccceeEEEEecCeEEEEEE--ecC------ee Confidence 8887763 33 788999999999999998777777665 3335544332211111111111000 000 00 Q ss_pred eeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHH Q lcl|Aclame:pro 208 KYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTD 287 (527) Q Consensus 208 ~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd 287 (527) .. + ........+++..|++++.||||.|+|. .+|.|+++++++|+|++|+++|+ T Consensus 225 ~~----------~-----------~~~~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~ 278 (492) T protein:vir:97 225 IP----------D-----------YSNNLENSKTHFSTGSWGKIPFIPFKNN-----DLEISDIFMYKTLIDAYNRRLSD 278 (492) T ss_pred ee----------c-----------ccccccccccccccCCCCCcceEEecCC-----CCCCCchHhHHHHHHHHHHHHHH Confidence 00 0 0011112234557999999999999995 36999999999999999999999 Q ss_pred HHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhc Q lcl|Aclame:pro 288 EDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAV 367 (527) Q Consensus 288 ~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~ 367 (527) .+..++++..|+++++|....+...-. -.+....++.+++++.+..|....+.+++++|+++|.+.|+..|.+|.+.+ T Consensus 279 ~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~ 356 (492) T protein:vir:97 279 LSNTFKDSNELTYVLKNYDDQELPEFK--RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSS 356 (492) T ss_pred HHHHHHHhccceeeeecCCcccchhHH--HHHhhccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhCCCCCCc Confidence 999999999999999997754432111 125566788999999999988777999999999999999999999999988 Q ss_pred ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHH Q lcl|Aclame:pro 368 GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKR 447 (527) Q Consensus 368 G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~ 447 (527) +.. ++.+||.||+..|++|..|+++++..|+.+|.|+++- +..++ ++. .....+.|+|.+.+|+|..++ T Consensus 357 ~~~--~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l-i~~~~----~~~----~~~~~i~v~f~~~~p~~~~e~ 425 (492) T protein:vir:97 357 DKF--GSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWF-VFEHF----DIK----GEHKDVDISFNYNKVANTELQ 425 (492) T ss_pred ccc--ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----cCC----cccceeeEEecCCCCCCHHHH Confidence 744 3567999999999999999999999999999998754 44333 221 233457889999999999999 Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH-hcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 448 FAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAE-AADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 448 i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~a-a~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ++.+++| +|++|.+|++++| +..++.+++.+++++...+... +.+.. ....|.|.+++...+..+- T Consensus 426 a~~~~kl--~G~iS~et~l~~l-------~~v~d~~~Eleri~~E~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e 492 (492) T protein:vir:97 426 VQTAQQS--MGIVSHETVLENH-------PFVEDLQAELERIEQEQTEYNKQLPNLD--DGGADSAQQQERSNNKESE 492 (492) T ss_pred HHHHHHH--hccCchHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHhhhccc--cCCCCCCcccccccccccC Confidence 9999888 6999999999976 3345566666776643221111 11211 2223344443333322222 No 35 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=3.5e-54 Score=313.64 Aligned_cols=448 Identities=11% Similarity=0.086 Sum_probs=307.6 Q ss_pred CCCChhhhhhhhHHhhcccCCC-----------CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc------cccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFP-----------NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE------GDQR 63 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~-----------~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~------~~~~ 63 (527) |- ..-|...+.|+..--..+ ...-..+..|+..|+.+.+||.|.+.-++.-.+-... ..-. T Consensus 1 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ 78 (468) T protein:vir:96 1 MI--DIFWPNEKPYHERVVEQIKPQYETQEEMILRLITKHKENVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPDW 78 (468) T ss_pred Cc--cccCCcCceeehheeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccc Confidence 21 111222222222221100 0111244568899999999999986543332211100 0012 Q ss_pred cccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceE Q lcl|Aclame:pro 64 PIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLS 143 (527) Q Consensus 64 ~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~ 143 (527) ++-.|-+++||++.++|| +|.+-.++++++++++.|..|++ +++..++.++.+.+.+.|.++.++++|. ++ +|. T Consensus 79 ki~~n~~~~Iv~~~~~~l-~g~p~~~~~~d~~~~~~l~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~---~~~ 152 (468) T protein:vir:96 79 RMYTNYHQNLVDQKVAYA-VANPVTYGTEDEKSLKTIQEVLN-HKWDDKLVDILTAASNKGVEWIQPYVDE-QG---EFK 152 (468) T ss_pred ccccchHHHHHHHHHhhh-ccCCceeccCChHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCeEEEEEEEcC-CC---ceE Confidence 345777999999999999 88888889999999999999996 7899999999999999999999999875 33 788 Q ss_pred EEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeee-eeeeeecCCccccCCccceeeeccccccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQ-KYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) Q Consensus 144 i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~-~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~ 222 (527) |..++|.++||+++++..++++++... |...+..........++ .|. ... +....+. .+ T Consensus 153 i~~~~p~~~~~v~~~~~~~~~~~~ir~--~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~-~~-------- 212 (468) T protein:vir:96 153 TFRVPAEQAIPIWTNKERDELKAFIRL--YELDGGERVEYWTANDVTFYE---LKD------GQLIPDY-YQ-------- 212 (468) T ss_pred EEEEcccceEEEEcCCCCCceEEEEEE--EEecCceEEEEEeCCeEEEEE---EcC------Cceeecc-cc-------- Confidence 999999999999998877777765333 44333221111111111 111 011 1111000 00 Q ss_pred ccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe Q lcl|Aclame:pro 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) Q Consensus 223 ~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~ 302 (527) .......+..+...|++++.||||+|+|. +.|.|+++++++|+|++|..+|+.+..++++++|++++ T Consensus 213 --------~~~~~~~~~~~~~~~~~~~~iPvv~~~n~-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~ 279 (468) T protein:vir:96 213 --------GEEHVQAHYYVGNKSMSWNRVPFIPFKNN-----PQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATELIYVL 279 (468) T ss_pred --------cccccccceeeccccccCCcccEEEecCC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCceeee Confidence 00111123345567899999999999996 35999999999999999999999999999999999999 Q ss_pred ccCCCcCCCCcccceecCCCeeEecC--CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH Q lcl|Aclame:pro 303 DSAPPRDSRGNMVPWTISPLGMVEHG--QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) Q Consensus 303 ~g~~~~d~~G~~~p~~v~pg~~~el~--~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A 380 (527) +|....+..+.. .....+.++.++ +++.+..+....+.+++++|+++|.+.|+..|++|.+.++.. ++++||.| T Consensus 280 ~g~~~~~~~~~~--~~~~~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~A 355 (468) T protein:vir:96 280 KGYEGEDLEEFM--YNLKYYKAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQDKF--GNSPSGIA 355 (468) T ss_pred ecCCccccchhh--hhhhcCceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccccccc--ccchHHHH Confidence 997654332222 234445666665 446777777666899999999999999999999999887643 46789999 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) |+..|++|.+|+.+|+..|..+|.|+++-+ .+++ +. ......+.|+|.+.+|+|..+.++. +.++|++ T Consensus 356 lk~~~~~l~~k~~~k~~~~~~~l~~~~~li-~~~~----g~----~~d~~~i~i~f~~~~p~d~~e~a~~---~~~~g~i 423 (468) T protein:vir:96 356 LKFMYSNLDLKANKLKNKTLTALQELLQYI-IDFY----KL----SIKVQDVEITFNFNVMVNELEQSQI---GVNSQYL 423 (468) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----CC----CcccceeeEEecCCCCcCHHHHHHH---HHhcCCC Confidence 999999999999999999999999987543 3332 22 1234567899999999999888875 4568999 Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) |.+|++++| +..+|.+++.++++....+.....+. .+++++.+-+ T Consensus 424 S~et~i~~l-------~~v~D~~~E~~ri~~E~~~~~~~~~~-----~~~~~~~~~~ 468 (468) T protein:vir:96 424 SKETVVTNH-------PWVDDPVAEMERIDQEELALPSIEEG-----LNGKENNEPT 468 (468) T ss_pred chHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHHhhc-----cCCCCCCCCC Confidence 999999876 33456777778877643333232332 2333333333 No 36 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=5.6e-54 Score=312.55 Aligned_cols=456 Identities=13% Similarity=0.124 Sum_probs=311.7 Q ss_pred CCCChh---hhhhhhHHhhcccC-CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeec----C--CcccccccccCCch Q lcl|Aclame:pro 1 MGQDKR---QYGSTQQLRAGEAN-FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILR----G--GDEGDQRPIYVPNG 70 (527) Q Consensus 1 m~~~~~---qy~~~~~~~~~~~~-~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~----g--~d~~~~~~~~~p~~ 70 (527) ||.++- ||-....+..--.. +....-.....|+..|..+.+||.|++.-+..... + .......++-.+-+ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~ 86 (474) T protein:vir:96 7 MPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFH 86 (474) T ss_pred CCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccccccccccccchH Confidence 777653 33222222111000 01112235567899999999999998633221110 0 00000112345668 Q ss_pred hHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 71 ~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) ++||++.++|| +|.+..+++++.++++.|..|++ ++++.++.++.+.+.+.|.|+.++++|. .+ ++.+..++|. T Consensus 87 k~Iv~~~~~yl-~g~p~~~~~~~~~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~-~~---~~~i~~~~p~ 160 (474) T protein:vir:96 87 QNLVDQKVSYV-AGKPVTYAHDDDKVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWLQVYINE-DG---ELKLFRVPAE 160 (474) T ss_pred HHHHHhhhhhh-cccCceeccCChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCC-CC---ceEEEEEccc Confidence 99999999999 88888899999999999999986 7899999999999999999999999885 33 7888999999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) +.||++++...++++++ +..|..............++.|- ....+.. .. + T Consensus 161 ~~~~v~d~~~~~~~~a~--ir~~~~~~~~~~~vy~~~~i~~~--~~~~~~~-------------~~--~----------- 210 (474) T protein:vir:96 161 QAIPIWTDKEREQLNAF--IRIFTFNGETKVEYWTAETVTYY--VYENGGL-------------IP--D----------- 210 (474) T ss_pred ceEEEEcCCCCCceEEE--EEEEeecCeeEEEEEeCCeEEEE--EEcCCce-------------ee--c----------- Confidence 99999998777777665 33454332111000000111110 0000000 00 0 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS 310 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~ 310 (527) ..........+..+++++.||||+|+|. ..|.|+++++++|+|++|+++|+.+..++++++|+++++|....+. T Consensus 211 -~~~~~~~~~~~~~~~~~~~vPvv~~~nn-----~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~ 284 (474) T protein:vir:96 211 -FYYGDEHIQTHFSTGSWERVPFIAFKNN-----PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDL 284 (474) T ss_pred -cccccccccCcccccCCCccceEEecCC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccc Confidence 0000012223456889999999999985 4599999999999999999999999999999999999999765432 Q ss_pred CCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHH Q lcl|Aclame:pro 311 RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILS 390 (527) Q Consensus 311 ~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLla 390 (527) .+.. .......++++++++.+..|....+.+++++|+++|.+.||..|++|.+.++.+ ++++||.||+..|++|.. T Consensus 285 ~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~Alk~~~~~l~~ 360 (474) T protein:vir:96 285 SEFM--EGLKYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKF--GSATSGIALKFLYTNLNL 360 (474) T ss_pred cchh--hhhhccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCcccccc--ccccHHHHHHHHHHHHHH Confidence 2211 224456688899999999988777999999999999999999999999887644 456899999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH Q lcl|Aclame:pro 391 SCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELS 470 (527) Q Consensus 391 kv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~ 470 (527) |+.+|+..|..+|.|+++-+ ..++ +.. .....+.|+|.+.+|+|..+.++.. .++|++|.+|++++| T Consensus 361 k~~~~~~~~~~~l~~~~~~i-~~~~----g~~----~d~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~et~~~~l- 427 (474) T protein:vir:96 361 KANKLKNKANVALQELMQFI-LDFN----KIK----LDAKEIEITFNFNVMVNDLEQSQIG---AQSQYLSKETLVRHH- 427 (474) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh----CCC----cccceeeEEecCCCccCHHHHHHHH---HHcCCCChHHHHHhC- Confidence 99999999999999987543 3322 221 2345678999999999998888754 458999999999876 Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-cc-cccccC Q lcl|Aclame:pro 471 KIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DE-EDDQAL 522 (527) Q Consensus 471 ~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~-~~~~~~ 522 (527) +..++.+++.+|++....+........... ..|++.+ ++ ++++.+ T Consensus 428 ------p~v~D~~~E~eri~~E~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 428 ------PWVDDPKAELERLDEEQLELNKQLPNLDDG-GADGAQQQQQSENNQSK 474 (474) T ss_pred ------CCCCCHHHHHHHHHHHHHHHHhhccccccc-cCCCCCCcCCCCccccC Confidence 334556677777765433332222222222 2223333 22 222233 No 37 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=5.6e-54 Score=312.55 Aligned_cols=456 Identities=13% Similarity=0.124 Sum_probs=311.7 Q ss_pred CCCChh---hhhhhhHHhhcccC-CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeec----C--CcccccccccCCch Q lcl|Aclame:pro 1 MGQDKR---QYGSTQQLRAGEAN-FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILR----G--GDEGDQRPIYVPNG 70 (527) Q Consensus 1 m~~~~~---qy~~~~~~~~~~~~-~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~----g--~d~~~~~~~~~p~~ 70 (527) ||.++- ||-....+..--.. +....-.....|+..|..+.+||.|++.-+..... + .......++-.+-+ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~ 86 (474) T protein:vir:95 7 MPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFH 86 (474) T ss_pred CCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccccccccccccccchH Confidence 777653 33222222111000 01112235567899999999999998633221110 0 00000112345668 Q ss_pred hHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 71 ~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) ++||++.++|| +|.+..+++++.++++.|..|++ ++++.++.++.+.+.+.|.|+.++++|. .+ ++.+..++|. T Consensus 87 k~Iv~~~~~yl-~g~p~~~~~~~~~~~~~l~~~~~-n~~~~~~~~l~~~~~~~G~~~~~~~~d~-~~---~~~i~~~~p~ 160 (474) T protein:vir:95 87 QNLVDQKVSYV-AGKPVTYAHDDDKVLDVIHQVLD-TRWDNKLIDILTAASNKGIDWLQVYINE-DG---ELKLFRVPAE 160 (474) T ss_pred HHHHHhhhhhh-cccCceeccCChHHHHHHHHHHh-ccHHHHHHHHHHHHhhCCeEEEEeeeCC-CC---ceEEEEEccc Confidence 99999999999 88888899999999999999986 7899999999999999999999999885 33 7888999999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) +.||++++...++++++ +..|..............++.|- ....+.. .. + T Consensus 161 ~~~~v~d~~~~~~~~a~--ir~~~~~~~~~~~vy~~~~i~~~--~~~~~~~-------------~~--~----------- 210 (474) T protein:vir:95 161 QAIPIWTDKEREQLNAF--IRIFTFNGETKVEYWTAETVTYY--VYENGGL-------------IP--D----------- 210 (474) T ss_pred ceEEEEcCCCCCceEEE--EEEEeecCeeEEEEEeCCeEEEE--EEcCCce-------------ee--c----------- Confidence 99999998777777665 33454332111000000111110 0000000 00 0 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS 310 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~ 310 (527) ..........+..+++++.||||+|+|. ..|.|+++++++|+|++|+++|+.+..++++++|+++++|....+. T Consensus 211 -~~~~~~~~~~~~~~~~~~~vPvv~~~nn-----~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~ 284 (474) T protein:vir:95 211 -FYYGDEHIQTHFSTGSWERVPFIAFKNN-----PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYILRGYEGEDL 284 (474) T ss_pred -cccccccccCcccccCCCccceEEecCC-----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcCCCcccc Confidence 0000012223456889999999999985 4599999999999999999999999999999999999999765432 Q ss_pred CCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHH Q lcl|Aclame:pro 311 RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILS 390 (527) Q Consensus 311 ~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLla 390 (527) .+.. .......++++++++.+..|....+.+++++|+++|.+.||..|++|.+.++.+ ++++||.||+..|++|.. T Consensus 285 ~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--~~n~Sg~Alk~~~~~l~~ 360 (474) T protein:vir:95 285 SEFM--EGLKYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKF--GSATSGIALKFLYTNLNL 360 (474) T ss_pred cchh--hhhhccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCcccccc--ccccHHHHHHHHHHHHHH Confidence 2211 224456688899999999988777999999999999999999999999887644 456899999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH Q lcl|Aclame:pro 391 SCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELS 470 (527) Q Consensus 391 kv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~ 470 (527) |+.+|+..|..+|.|+++-+ ..++ +.. .....+.|+|.+.+|+|..+.++.. .++|++|.+|++++| T Consensus 361 k~~~~~~~~~~~l~~~~~~i-~~~~----g~~----~d~~~i~i~f~~~~p~~~~e~a~~~---~~~giiS~et~~~~l- 427 (474) T protein:vir:95 361 KANKLKNKANVALQELMQFI-LDFN----KIK----LDAKEIEITFNFNVMVNDLEQSQIG---AQSQYLSKETLVRHH- 427 (474) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh----CCC----cccceeeEEecCCCccCHHHHHHHH---HHcCCCChHHHHHhC- Confidence 99999999999999987543 3322 221 2345678999999999998888754 458999999999876 Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-cc-cccccC Q lcl|Aclame:pro 471 KIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DE-EDDQAL 522 (527) Q Consensus 471 ~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~-~~~~~~ 522 (527) +..++.+++.+|++....+........... ..|++.+ ++ ++++.+ T Consensus 428 ------p~v~D~~~E~eri~~E~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 428 ------PWVDDPKAELERLDEEQLELNKQLPNLDDG-GADGAQQQQQSENNQSK 474 (474) T ss_pred ------CCCCCHHHHHHHHHHHHHHHHhhccccccc-cCCCCCCcCCCCccccC Confidence 334556677777765433332222222222 2223333 22 222233 No 38 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=2.6e-54 Score=314.37 Aligned_cols=456 Identities=12% Similarity=0.153 Sum_probs=297.4 Q ss_pred CCCChhhhhhhhHHhhcccCC-----CCCCChHHHHHHHHHHHHHHHhcCChhh--eEeeecCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANF-----PNAVTDFDKARLASYRLYEDMYLTNTSD--YQVILRGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~-----~~~v~~~d~~Rl~aY~~~~~~y~~~~~~--~~~i~~g~d~~~~~~~~~p~~~k~ 73 (527) |. ++.+ ..+.+ ...+-..-..+..+++.+.+||.|++.- +..-. ..+......-.+-+++| T Consensus 1 ~~-------~~~~---~~~~~~~~~~~~~l~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~--~~~~~~~~~~~n~~~~i 68 (484) T protein:vir:77 1 MT-------SPLQ---KQENVDPEKAREEMLNLFTERTQDLGDNTAYYESERRPDAVGVTV--PQQMQKLLAHVGYPRLY 68 (484) T ss_pred CC-------Cccc---ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccccc--chhHHhhhhhcCcHHHH Confidence 11 0001 00110 0011122234556788899999998542 11111 11111111223558999 Q ss_pred HHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCC----CccceEEEEEcc Q lcl|Aclame:pro 74 IEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKD----EGSRLSLHEVDP 149 (527) Q Consensus 74 v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~----~~~r~~i~~vdP 149 (527) |++.+.+| +.-++.+ ..+++.++.+..|+++|+|+.++.++++.|.+-|.|+.+|++|.... ...++.|+.++| T Consensus 69 vd~~~~~l-~~~g~~~-~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p 146 (484) T protein:vir:77 69 IDAIAARQ-ELEGFRL-GGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPP 146 (484) T ss_pred HHHHHhhh-ccCceec-CCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEecc Confidence 99999998 3223333 34456677788888899999999999999999999999999885432 122567889999 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccc--ccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEP--GKWDDRPESPL 227 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~--g~wd~~~~~~~ 227 (527) ...|+++|+.. +++...... |...++.. +.+...| .++ .+ .+|.. ++|. T Consensus 147 ~~~~~~~D~~~-~~~~~a~~~--~~~~~~~~----~~~~~~y----~~~-------~~----~~~~~~~~~~~------- 197 (484) T protein:vir:77 147 TNLYAQIDPRT-RQVMRAIRA--IEDEEGNE----VIGATLY----LPN-------NT----VIWNREDGQWV------- 197 (484) T ss_pred ceeEEEecCCC-CceEEEEEE--EEeecCCc----EEEEEEE----ecC-------eE----EEEEecCCceE------- Confidence 99999998864 444443222 33322221 1111111 110 00 11111 1121 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAP 306 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~ 306 (527) .++..|++++.||||+|+|.+...++||+|+|++ +++|+|++|+++||+..++++++.|.+++.|.. T Consensus 198 ------------~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~ 265 (484) T protein:vir:77 198 ------------QVANVAHNLEMVPVIPIPNRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVK 265 (484) T ss_pred ------------eeccccCCCCCcceEEeccccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCC Confidence 1234589999999999999988999999999985 999999999999999999999999999998875 Q ss_pred CcC-----CCCcccceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH Q lcl|Aclame:pro 307 PRD-----SRGNMVPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) Q Consensus 307 ~~d-----~~G~~~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A 380 (527) +.+ .+|... ++..+|.+|.++ ++.+|.+++. .++++|.++++.+...++.++.||..+||... .+..||.| T Consensus 266 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~-~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~-~n~~Sg~A 342 (484) T protein:vir:77 266 GEELGVDPETGQTL-FDAYLARILAFEDHESKAQQFSA-AELRNFVDALDALDRKAAAYTGLPPYYLSFSS-ENPASAEA 342 (484) T ss_pred cchhcccccccchh-hhhhhhhhcccCCCCceeEeecC-CChHHHHHHHHHHHHHHhcccCCCHHHhcccc-CcchHHHH Confidence 422 345433 677889999987 5799999994 68999999999999999999999999999433 24459999 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcC-- Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAG-- 458 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aG-- 458 (527) |+..+.+|+.|+++||..|+.+|.|+++.+ ..+. +.. ........++|+|.+++|.|.++.++.+++|+++| T Consensus 343 l~~~~~~l~~ka~~k~~~f~~~l~~~~~l~-~~~~----~~~-~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~g 416 (484) T protein:vir:77 343 IRSSESRLVKTVERKNKIFGGAWEQAMRVA-YKVM----NGG-DIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQG 416 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----CCC-CcccccccceEEecCCCCCCHHHHHHHHHHHHhccCC Confidence 999999999999999999999999987533 3222 111 11112235678999999999999999999999987 Q ss_pred CccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-HhcCcccccccccCCCCcccccccCCCCC---C Q lcl|Aclame:pro 459 LIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQA-EAADPFGAQMAAEQGIPDEEDDQALNGQP---L 527 (527) Q Consensus 459 lls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~-aa~d~~g~~~~~d~g~~d~~~~~~~~~~~---~ 527 (527) ++|.++++++| +++.+++++ .++++.+..+.+ ...++........+|.++..+-++..+.| . T Consensus 417 i~s~et~~~~l------~~~~~~~~e-~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (484) T protein:vir:77 417 VIPKERARIDM------GYSITEREE-MRKWDEEEQAQGLGLMGTMFGTDPSGGGNPDNPETPEPQPNPAEEA 482 (484) T ss_pred CCCHHHHHhcC------CCChhHHHH-HHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCcccccCCCcccc Confidence 89999999986 344444443 333333222111 12222221111112222221111111111 1 No 39 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=7.2e-54 Score=311.92 Aligned_cols=455 Identities=11% Similarity=0.042 Sum_probs=296.3 Q ss_pred CCCChhhhhh---hhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc-ccccc--ccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGS---TQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE-GDQRP--IYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~---~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~--~~~p~~~k~v 74 (527) |=+.+++=-. ...++-. -+-....+|+.+|+.+.+||.|++.-...-.+..++ .+... .-.+-+++|| T Consensus 1 ~~~~p~~~l~~~~~~~~~~~------~l~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~iV 74 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLET------KVFPKMNTECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMGLMV 74 (479) T ss_pred CccCCcccCChhHHHHHHHH------HHHHHHHHHhHHHHHHHHHHhcCCcccccccccCChhHHHHHHHhhcCcHHHHH Confidence 5554443000 0011100 000123458889999999999997533221112221 11111 1135589999 Q ss_pred HhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEe----cCCCCCccceEEEEEccc Q lcl|Aclame:pro 75 EAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIG----DDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 75 ~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~----d~~k~~~~r~~i~~vdP~ 150 (527) ++.+++|.+ ..+++++.+.++.+..|+++|+|+.++.++.+.+.+-|.|+..|+. ++..+ .+.|+.++|. T Consensus 75 d~~~~~l~~---~gf~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g---~~~i~~~~p~ 148 (479) T protein:vir:99 75 NSFAQQLIV---DGYRKTGTNENAKGWDTWRLNQMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTT---VARIKCIDPR 148 (479) T ss_pred HHHHhhccc---ccccCCCchhhHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCC---ceEEEEechh Confidence 999999832 2345667777777888888899999999999999999998777764 23333 5778899999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) +.|+++++...+.. .++.+ ++.. +. . + +| +.. . ....| ....+ T Consensus 149 ~~~~iydd~~~~~~-~~~~~-~~~~--~~---~----~-~~---~~~--------~---~~~~~-----~~~~~------ 191 (479) T protein:vir:99 149 DAFAIWEDPYWDEW-PKYLL-ERQP--NG---Q----Y-WW---WTE--------E---DYSIF-----EFKQG------ 191 (479) T ss_pred heEEEecCCcccce-eeEEE-eecC--ce---e----E-EE---Eec--------c---eEEEE-----EecCC------ Confidence 99999976543322 22211 1110 00 0 0 00 000 0 00001 10000 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcC- Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRD- 309 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d- 309 (527) .+ ..++..|++++.||||+|+|.+.. +.||.|+++++++|+|++|+++|+.+.++++++.|++++.|....+ T Consensus 192 ~~------~~~~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~ 264 (479) T protein:vir:99 192 KF------IYRETVSHDYGHIPFVRYVNVMDL-RGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEG 264 (479) T ss_pred ce------eeccccccCCCCcceEEeecCCCc-CcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccc Confidence 00 113567899999999999999655 5689999999999999999999999999999999999999976543 Q ss_pred CCCcccceecCC-CeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccH Q lcl|Aclame:pro 310 SRGNMVPWTISP-LGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAI 388 (527) Q Consensus 310 ~~G~~~p~~v~p-g~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PL 388 (527) ..++...+.... +.++..+++.++.+++ .++++++.++++.+...|+.++.||...||.+ +..||.||+..+.+| T Consensus 265 ~~~~~~~~~~~~~~i~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~~---~n~Sg~Al~~~~~~l 340 (479) T protein:vir:99 265 ANADQEKMRFAQESMLISQNEKASFGAIP-AAPLDGLLNAYKESLLEFLALAQLPPHIAGQI---VNVAADALAAGTRQT 340 (479) T ss_pred cccchhccccccccceeecCCCceEEEec-ccchHHHHHHHHHHHHHHhccCCCCHHHcccc---cchHHHHHHHHHHHH Confidence 355555566554 4445678889999998 46899999999999999999999999999942 336999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH Q lcl|Aclame:pro 389 LSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEE 468 (527) Q Consensus 389 lakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~ 468 (527) +.|+++|+..|+.+|.|+++.+ .+++ +... ......++++|.++.|+|..+.++.+++|+++|++|.+|++++ T Consensus 341 ~~ka~~~~~~f~~al~~~~~l~-~~~~----~~~~--~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~ 413 (479) T protein:vir:99 341 MQKLFEKQATWKASHNQTMRLV-NKIE----GRTE--EATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDM 413 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHc----CCCc--cccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHh Confidence 9999999999999999987543 3322 2111 1122456789999999999999999999999999999999988 Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHH--HHHHhcCcccccccccCCCCccccccc-----CCCCCC Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQATEDKKTQGI--AQAEAADPFGAQMAAEQGIPDEEDDQA-----LNGQPL 527 (527) Q Consensus 469 L~~~g~~~~~e~~~~~~~e~~a~~a~--~~~aa~d~~g~~~~~d~g~~d~~~~~~-----~~~~~~ 527 (527) | . +++..+++++.+...++.. ..+.+.......+..+++.+...+.++ +.+..| T Consensus 414 l---~--gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (479) T protein:vir:99 414 I---P--NLDQSTVNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNMQQANNKTGEPASL 474 (479) T ss_pred c---C--CCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCCCCCCCCCcchhcc Confidence 7 2 3444444433222221111 111111111111222223332222222 233344 No 40 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=100.00 E-value=1.5e-53 Score=310.14 Aligned_cols=438 Identities=13% Similarity=0.105 Sum_probs=307.5 Q ss_pred CCCChhhhhhhhHHhhcccCC------CCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANF------PNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~------~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) |-|-| ..=|.--.+.- ...|. ..+.|+.+|+.+.+||.|++.-+..-.+.... .-.++-.|-+++|| T Consensus 1 ~~~~~-----~~~~~~~~~~~~~~~~i~~~i~-~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~-~~~ki~~n~~~~iv 73 (452) T protein:vir:36 1 MKYKP-----PKLMTFSKDEPITVEVVTKFME-KHKLEVARYEYLKNMYLGIMAIDDEPAKDSWK-PDNRLAVNFTKYIV 73 (452) T ss_pred CcccC-----ceeEEcCCccCCCHHHHHHHHH-HHHHHHHHHHHHHHHhccccccccCccccccC-ccceeecchHHHHH Confidence 55433 22222221110 01122 34578899999999999987554433322221 12345567799999 Q ss_pred HhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEE Q lcl|Aclame:pro 75 EAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP 154 (527) Q Consensus 75 ~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp 154 (527) ++.++|| +|.+..+++.++++++.|..|++.++++.++.++.|.+.+.|.++.++++|. ++ ++.|+.++|...|| T Consensus 74 d~~~~~l-~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g---~~~i~~~~p~~~~~ 148 (452) T protein:vir:36 74 DTFTGYF-NGIPVKKSHSDKEILTKLQEFDNLNDMEDEESELAKMACIYGRAFEFLYQDE-DT---QTNVVYNSPENMFM 148 (452) T ss_pred HHHhhhh-cccCceeecCChhHHHHHHHHHhhcChhHHHHHHHHHHHhcCeEEEEEEecC-CC---eeEEEEEcccceEE Confidence 9999999 7778778888999999999999989999999999999999999999999885 23 78889999999999 Q ss_pred EecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccc--ccccccccccccccce Q lcl|Aclame:pro 155 YEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEP--GKWDDRPESPLEPDDI 232 (527) Q Consensus 155 ~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~--g~wd~~~~~~~~~~~~ 232 (527) ++++...++++.+ +..|.+++... |...|.+ ..+ .+|+. ++| T Consensus 149 v~d~~~~~~~~~~--i~~~~~~~~~~----------~~~vyt~-------~~i----~~~~~~~~~~------------- 192 (452) T protein:vir:36 149 VYDDTVKQEPLFA--VRYGVDEDKKL----------QGEVYTL-------LET----IKISGENDEI------------- 192 (452) T ss_pred EEcCCCCCceEEE--EEEEEecCceE----------EEEEEec-------CeE----EEEEEcCCce------------- Confidence 9998776666544 22244433211 1111111 000 00100 011 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG 312 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G 312 (527) ..++..|++++.||||+|+|.+ .|.|+++++++|+|++|+++|+.+.+++++++|++++.|....+... T Consensus 193 ------~~~~~~~~~~g~iPvv~~~n~~-----~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~~~~~g~~~~~~~~ 261 (452) T protein:vir:36 193 ------SFGEGTYNPYPDLPVVEFYFNE-----ERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEEEDL 261 (452) T ss_pred ------EEecceeccCCcccEEEecCCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCCcCchhh Confidence 1234458999999999999963 59999999999999999999999999999999999999876433321 Q ss_pred cccceecCCCeeEecCCCC-----ceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhcc Q lcl|Aclame:pro 313 NMVPWTISPLGMVEHGQNN-----KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSA 387 (527) Q Consensus 313 ~~~p~~v~pg~~~el~~~~-----k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~P 387 (527) . .+.++.+|.++.++ .+..|..-.+.+++++|++.|.+.|+..|++|.+.++.. +..||.||+..+++ T Consensus 262 ~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~---gn~Sg~Al~~~~~~ 334 (452) T protein:vir:36 262 K----NIRSNRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESF---GSSSGVSLAYKLQA 334 (452) T ss_pred h----hhhhcceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccc---cCCcHHHHHHHHHH Confidence 1 23456677766654 466666556899999999999999999999999888744 34599999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHH Q lcl|Aclame:pro 388 ILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTE 467 (527) Q Consensus 388 Llakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~ 467 (527) |..|+.+++..|+.++.|+++-+ ..++. .. +.......++|+|.+.+|.|.++.++.++++ +|++|.+|+++ T Consensus 335 l~~k~~~~~~~~~~~l~~~~~li-~~~~~----~~-~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~--~g~iS~et~~~ 406 (452) T protein:vir:36 335 MSNLALSFQRKFQSSLNSRYKLF-CELST----NV-SNKDSWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETALS 406 (452) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHh----cc-CCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHH Confidence 99999999999999999987544 33332 21 2223344578999999999999999998776 79999999998 Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-cccccccC Q lcl|Aclame:pro 468 ELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DEEDDQAL 522 (527) Q Consensus 468 ~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~~~~~~~ 522 (527) +| +..++.+++.+|+++... +++-.+. ....++.|.. +...|+++ T Consensus 407 ~~-------~~~~d~~~E~~ri~~E~~-~~~~~~~--~~~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 407 VI-------SVIPDVQAEMEKIKKEEA-STAIFDK--DKQPSEKGTDTVVSETNEE 452 (452) T ss_pred hC-------CCCCCHHHHHHHHHHHHH-HHHHHHh--hccCCCCcccccCccccCC Confidence 76 234456777777765322 2211122 2223344433 33334444 No 41 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=100.00 E-value=2.6e-53 Score=308.92 Aligned_cols=454 Identities=11% Similarity=0.088 Sum_probs=304.5 Q ss_pred CChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeec-----CCcc-----cccccccCCchhH Q lcl|Aclame:pro 3 QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILR-----GGDE-----GDQRPIYVPNGEK 72 (527) Q Consensus 3 ~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~-----g~d~-----~~~~~~~~p~~~k 72 (527) ...+ ....++.. .-...+.|+..|..+.+||.|++.-+..-.+ +... .--.++-.+-++. T Consensus 1 ~~~~---~~~~~i~~-------~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ 70 (470) T protein:vir:10 1 MELD---ALKKLIQN-------TSTSRNDLINNYKQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQL 70 (470) T ss_pred CchH---HHHHHHHH-------HHHHHHHHHHHHHHHHHHhccccchhccccchhcccccccccccccCCcccccchHHH Confidence 1111 11111111 1124567899999999999998643221100 0000 0012345666899 Q ss_pred HHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 73 LIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 73 ~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) ||++.++|| +|.+-.+++++++.++.|.+|++ +++..++.++.+.+.+.|+|+.++++|. ++ ++.+..++|.++ T Consensus 71 Iv~~~~~yl-~G~p~~~~~~d~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~G~a~~~~y~d~-~~---~~~~~~~~p~~~ 144 (470) T protein:vir:10 71 LVDQEAGYV-ASVFPDIDVGKDADNKKIIDVLG-DDRALTLNGLLVDSSNAGRAWLHYWIDE-DG---NFRYGIIQPDQI 144 (470) T ss_pred HHHhhhhhe-eccceeeecCchHHHHHHHHHHh-hhHHHHHHHHHHHHhhcCeeEEEEEecC-CC---ceEEEEEcccce Confidence 999999999 88888888999999999999997 6788888999999999999999999985 23 788999999999 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccc-cccccccccccc Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKW-DDRPESPLEPDD 231 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~w-d~~~~~~~~~~~ 231 (527) ||++++...++++++--.|...+.++.....++. .| .+ +.+.+- .+.-.++ ...+........ T Consensus 145 ~~v~d~~~~~~~~a~ir~y~~~~~~~~~~~~~~e---~y----t~-------~~~~~~--~~~~~~~~~~~~~~~~~~~~ 208 (470) T protein:vir:10 145 TPIYATTLDNKLLGILRSYKQLDPDSGKYFTVHE---YW----TD-------KEAQFF--RTNATDSTVIEPYNIITSYD 208 (470) T ss_pred EEEEcCCCCCceEEEEEEEEeeecCCceEEEEEE---EE----cC-------CcEEEE--EeecCcceeccccccccccc Confidence 9999998877776652222222222221111111 11 11 011000 0000000 000000011111 Q ss_pred eeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC Q lcl|Aclame:pro 232 IKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR 311 (527) Q Consensus 232 ~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~ 311 (527) ..........+..+++++.||||+|+|. ..|.|+++++++|+|++|.++|+.+..++++++|++++.|....+. T Consensus 209 ~~~~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~~~~~- 282 (470) T protein:vir:10 209 LSAGYETGQSNTLKHNFGRVPFIEFSKN-----KYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYGGADL- 282 (470) T ss_pred cccccccccccccccCCCeeeEEEeecC-----CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCCcccc- Confidence 1222234456778999999999999996 3699999999999999999999999999999999999988753221 Q ss_pred CcccceecCCCeeEecC-----CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 312 GNMVPWTISPLGMVEHG-----QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 312 G~~~p~~v~pg~~~el~-----~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ++.. -......++.++ .++.+..|....+.+++++|+++|.+.||..|.+|.+.... .+.+||.||+..|+ T Consensus 283 ~~~~-~~~~~~~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~---~gn~Sg~Alk~~~~ 358 (470) T protein:vir:10 283 HQFM-NDLRKYKSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDPANFE---SSNASGVAIKMLYS 358 (470) T ss_pred chhh-hhhhhcCeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCCCccc---cccchHHHHHHHHH Confidence 1111 112233344443 35678888877799999999999999999999999987753 35689999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) +|..|+.+||..|..+|.|+++- |..+| ++ .......++|+|.+.+|+|..++++.++++ +|++|.+|++ T Consensus 359 ~l~~k~~~~~~~~~~~l~~~~~~-i~~~l----~~---~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l 428 (470) T protein:vir:10 359 HLELKAAKTQTYFEHAINELVRA-IMRYL----NF---SDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVA 428 (470) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHh----cc---cCcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHH Confidence 99999999999999999988754 33333 22 122334678999999999999999988776 7999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) ++| |.+++.+++.+|+++...+.........+. ..+|..|++ T Consensus 429 ~~~-------p~v~D~~~E~eri~~E~~e~~~~~~~~~~~--~~~~~dde~ 470 (470) T protein:vir:10 429 KAN-------PIVDDWQQELKDLAKDKEENDPYSNQADEL--NGKGVNDEQ 470 (470) T ss_pred HhC-------CCCCCHHHHHHHHHHHHHHHHHhhcccccc--CCCCCCCCC Confidence 976 345667778888876433332222222111 112233333 No 42 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=100.00 E-value=2.2e-53 Score=309.25 Aligned_cols=465 Identities=13% Similarity=0.103 Sum_probs=314.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCC----CC----hHHHHHHHHHHHHHHHhcCChhhe--EeeecCCcccccccccCCch Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNA----VT----DFDKARLASYRLYEDMYLTNTSDY--QVILRGGDEGDQRPIYVPNG 70 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~----v~----~~d~~Rl~aY~~~~~~y~~~~~~~--~~i~~g~d~~~~~~~~~p~~ 70 (527) |=|+.+-|-.+.-.+. .++-+. |. .+..+|+.+|+.|.+||.|.+..+ +...+........++-.|-+ T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n~~ 78 (506) T protein:vir:94 1 MDYDLTEHKQANLIYQ--ESLENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHEDGKADHRATHSFA 78 (506) T ss_pred CCcchhhhhcceeecc--cchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccCCcceeecchH Confidence 9888777766554332 111111 11 134667889999999999986542 11222222222244556779 Q ss_pred hHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 71 ~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) ++||++.++|| +|.+-.++++++++++.|..|++.++++.++.++.+.+.+.|+++.++++|. .+ +|.|..++|. T Consensus 79 ~~Iv~~~~~~l-~G~p~~~~~~d~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~de-d~---~~~i~~~~p~ 153 (506) T protein:vir:94 79 KYIADFQTSYS-VGNPINVKLPDDGSNSGFDTFNKANDVDAENYDLFLDMSRYGRAYEYVYRGE-DN---EEHLAKLDPL 153 (506) T ss_pred HHHHHHhhhhh-cccCceeecCcchHHHHHHHHHhccCHhHHHHHHHHHHHhcCeEEEEEEecC-CC---eeEEEEEccc Confidence 99999999999 8888888889999999999999999999999999999999999999999984 23 7888999999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) +.||++++...++++...-. |...+....... ....|...+.+.. +. .|.-.. T Consensus 154 ~~~~v~dd~~~~~~~~~v~~--~~~~~~~~~~~~--~~~~~~~~yt~~~-------~~----~~~~~~------------ 206 (506) T protein:vir:94 154 DTFVIYSTDVDPKPIMAVRY--HQIELVDDNQVS--TINYVPETWTADT-------YT----LYNPTP------------ 206 (506) T ss_pred ceEEEecCCCCCceEEEEEE--EeeeeccCCcee--EEEEEEEEEeCce-------EE----Eecccc------------ Confidence 99999988766665543222 322221111111 1111111111110 00 110000 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS 310 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~ 310 (527) .....++..+++++.||||+|+|.. .|.|+++++++|+|++|+.+|+.+..++.+.+|+++++|.+..+. T Consensus 207 -----~~~~~~~~~~~~~g~vPvv~~~n~~-----~~~sd~e~~~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~ 276 (506) T protein:vir:94 207 -----IMGKMQVDTTKPITTFPVVEFKNSN-----FRLGDFENVLPLIDLYDAAQSDTANYMTDLNEAMLIIQGDIDTLF 276 (506) T ss_pred -----CccceeccccccCCccceEEecCCC-----CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcCccccc Confidence 0112234468999999999999963 488999999999999999999999999999999988888543222 Q ss_pred CC--------------cccce--------ecCCCeeEecC---------CCCceEEeccccChHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 311 RG--------------NMVPW--------TISPLGMVEHG---------QNNKIYRVNGVASLEPSQTHMNKAEEAMQQT 359 (527) Q Consensus 311 ~G--------------~~~p~--------~v~pg~~~el~---------~~~k~~~ld~~~~la~~~~~~d~L~~~l~~v 359 (527) ++ ..... ...-..++.++ .++.+..|....+++++++|++.|.+.|+.. T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~ 356 (506) T protein:vir:94 277 EGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKF 356 (506) T ss_pred cchhccccccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHH Confidence 11 10000 00011222332 3456777776678999999999999999999 Q ss_pred hcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCC Q lcl|Aclame:pro 360 KGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDP 439 (527) Q Consensus 360 s~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~ 439 (527) |++|.+..+.. ++.+||.||+..+++|..|+.+|+..|+.+|.|+++-+ ..++-.. ..........++|+|.+. T Consensus 357 s~~p~~~~~~~--~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li-~~~~~~~---~~~~~~d~~~i~i~f~~~ 430 (506) T protein:vir:94 357 SHTPDLTDENF--ASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQII-SDIENSI---HGDWTFDPQELTFTFRDN 430 (506) T ss_pred hCccccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc---CCccccccccceEEeCCC Confidence 99999887643 36679999999999999999999999999999987443 3343211 111122334578999999 Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 440 KPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 440 lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +|.|..+.++.+++| +|++|.+|++++| |..++.+++.+++++....+...-|..+ ..++.+.+++..| T Consensus 431 ~p~d~~e~a~~~~kl--~g~iS~et~~~~l-------p~v~d~~~E~~ri~~E~~~~~~~~~~~~--~~~~~~~~~~~~~ 499 (506) T protein:vir:94 431 LPADNISQIKALVQA--GATLPQKYLYQQL-------PGVTNPQDIVDMMKEQSANGDYSFDQNG--VISNDGQTNTTAT 499 (506) T ss_pred CCcCHHHHHHHHHHH--hccCChHHHHHhC-------CCCCCHHHHHHHHHHHHHHHhhcchhhc--CCCcccCcccccc Confidence 999999999999887 6999999999976 2344566677777655433333333322 2344455544444 Q ss_pred ccCCCCC Q lcl|Aclame:pro 520 QALNGQP 526 (527) Q Consensus 520 ~~~~~~~ 526 (527) ++.--.- T Consensus 500 ~~~~e~~ 506 (506) T protein:vir:94 500 QTDEEVR 506 (506) T ss_pred ccccCCC Confidence 4433333 No 43 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=2.7e-53 Score=308.77 Aligned_cols=473 Identities=13% Similarity=0.078 Sum_probs=301.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCCh-------------HHHHHHHHHHHHHHHhcCChhheEeeecC-Cccccc--cc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTD-------------FDKARLASYRLYEDMYLTNTSDYQVILRG-GDEGDQ--RP 64 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~-------------~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g-~d~~~~--~~ 64 (527) -|.|----+ .++.=.+|...++ ....|+.+|++|.+||.|.+.- +.+-++ .++... +. T Consensus 3 ~~~~~~~~~-----~~~~~~~p~~~~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~-~~~~~~~~~~~~~~~~~ 76 (501) T protein:vir:25 3 VPVDVIADA-----PAADVEFPEDSMSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGR-PEVPEGASDEVKELAKL 76 (501) T ss_pred ccchhhhcc-----CcccccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhccccCChhhhhhHhh Confidence 122111111 1111112222221 2335888999999999998642 111111 111111 11 Q ss_pred ccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEE Q lcl|Aclame:pro 65 IYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) Q Consensus 65 ~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i 144 (527) .-.+-+++||++.+.+|.+ -.+..++.+.++.+..|+++|+|+.+..++++.+.+-|.|+.+|+.|. .+. .| T Consensus 77 ~v~n~~~~ivd~~a~~l~~---~gf~~~d~~~~~~l~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~de---~~~--~i 148 (501) T protein:vir:25 77 SVKNVLSLVRDSFAQNLSV---VGYRNALAKENDPAWEMWQRNRMDARQAEVHRPALTYGASYVTVTPTD---EGP--VF 148 (501) T ss_pred hhcChHHHHHHHHHhhhcc---cceecCCccchHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCC---CCC--eE Confidence 1125589999999999843 224556666677788899999999999999999999999998988774 233 45 Q ss_pred EEEccceEEEEec-CCCCCceEEEEEEEeeeCCCCccceeeee-eeeeeeeeecCCccccCCccceeeeccccccccccc Q lcl|Aclame:pro 145 HEVDPSTYFPYED-PRYPGQVLGVYLVDEYPHPDSEKKNEKCA-RVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) Q Consensus 145 ~~vdP~~~fp~~d-~d~~~~v~~vh~a~~~~~pd~~~~~~k~~-rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~ 222 (527) +.++|...|++++ +....++..+...+ ....+.....++. +--++.-.+...+ .+... ...+.|... T Consensus 149 ~~~sp~~~~~iy~D~~~~~~~~~ai~~~--~~~~~~~~~~~~~~y~~~~~~~~~~~~------~~~~~---~~~~~~~~~ 217 (501) T protein:vir:25 149 RTRSPRQILAVYADPSVDAWPQYALETW--VAQKDAKPHRRGVLYDDTYMYELDLGE------VVLGD---AGGGQATQQ 217 (501) T ss_pred EEeccccEEEEEecCCCCcceeEEEEEE--eeccccCcceeEEEecCeeEEEEecCc------eeeee---ccccccccc Confidence 6799999999985 44444566554443 3332222111111 1000000110000 00000 000011111 Q ss_pred ccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe Q lcl|Aclame:pro 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) Q Consensus 223 ~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~ 302 (527) ... ...+.+..+...-|+|++.||||+|+|.+.. ..||+|+++++++|+|++|+++|++..+++|++.|.+++ T Consensus 218 ~~~------~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~-~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i 290 (501) T protein:vir:25 218 PVN------VREVTDVIEHGATFEGKPVCPVVRFVNGRDA-DDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVI 290 (501) T ss_pred ccc------ccccccccccccccCCccceeeEeccCcccc-CccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHH Confidence 110 0111122223456899999999999998654 568999999999999999999999999999999999999 Q ss_pred ccCCCcCCCCcccceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHH Q lcl|Aclame:pro 303 DSAPPRDSRGNMVPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIAL 381 (527) Q Consensus 303 ~g~~~~d~~G~~~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~AL 381 (527) .|+...+. ..+...+|.||.++ ++.+|.+++ .+++.+|.++++.+...||.++.||...||.. ++.+||.|| T Consensus 291 ~G~~~~~~----~~~~~~~~~i~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~--~~N~Sg~Al 363 (501) T protein:vir:25 291 SGWTGSKA----EVLKASALRVWTFEDPEVKAQAFP-PASVEPYNLILEEMLQHVAMVAQISPAQVTGK--MINVSAEAL 363 (501) T ss_pred hCCCCCcc----chhhhcccceeccCCCCceEEEec-ccChHHHHHHHHHHHHHHHhhcCCChhhhccc--cCChHHHHH Confidence 99864322 23678889999976 689999998 46999999999999999999999999999933 455799999 Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc Q lcl|Aclame:pro 382 DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIP 461 (527) Q Consensus 382 ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls 461 (527) +..+.+|+.|+++||..|+.+|.|+++.. .++. +. ........++|+|.+++|.|.++.++.+++|+++|+ | T Consensus 364 ~~~~~~l~~ka~~k~~~f~~~l~~~~rl~-~~~~----~~--~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s 435 (501) T protein:vir:25 364 AAAEANQQRKLAAKRESFGESWEQLLRLA-AEMD----DD--PDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-P 435 (501) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----CC--CccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-C Confidence 99999999999999999999999987533 2222 21 111223467889999999999999999999999985 9 Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-HH---HHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 462 AKKLTEELSKIMGFELTEEDFRQATEDKKTQGI-AQ---AEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 462 ~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~-~~---~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) .++++.+| .+++..+++++.+..+++.. .. ....++.+.. .+++.+..+.++.++.+|= T Consensus 436 ~et~~~~~-----~g~~~~~ie~~~~~~~e~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 498 (501) T protein:vir:25 436 IEHLLSMV-----PGMTQQTIQAIKDSLRGGEVKSLVDKLLSNEPAPVP--PPPPQAAAQALNEGGVNGN 498 (501) T ss_pred HHHHHHHc-----CCCCHHHHHHHHHHHHHHhHHHHHHHhhccCcCCCC--CCCCCCCccccccccCCCC Confidence 99988876 24555565554433332211 11 1123333322 1122222223333333333 No 44 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=2.7e-53 Score=308.82 Aligned_cols=438 Identities=15% Similarity=0.140 Sum_probs=297.1 Q ss_pred CCC--------ChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhH Q lcl|Aclame:pro 1 MGQ--------DKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEK 72 (527) Q Consensus 1 m~~--------~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k 72 (527) |-| -++++- ...+|.. .|. ....++.+|+.+.+||+|.+.-++.-.+.... .-.++-.|-+++ T Consensus 1 ~~~~~~~~~~~p~d~~~-~~~~l~~------~i~-~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~-~~~ki~~n~~~~ 71 (453) T protein:vir:39 1 MKYKPPKLMTFPKDEPI-TNEVVTK------FME-KHRLEVARYEYLKNMYRGIMAIDAEPTKDLWK-PDNRLTVNFTKY 71 (453) T ss_pred CeecCCcceEcCCCCCC-CHHHHHH------HHH-HHHHHHHHHHHHHHHhhccCchhcCCCccccC-ccceeecchHHH Confidence 322 222221 1111111 122 23457789999999999976433222111111 113445577999 Q ss_pred HHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 73 LIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 73 ~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) ||++.++|| +|.+-.++++++++++.|..|+++++|+.++.++.+.+.+.|.|+.++++|. ++ ++.|+.++|.+. T Consensus 72 ivd~~~~~l-~g~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~~~~~G~~~~~v~~d~-~g---~~~i~~~~p~~~ 146 (453) T protein:vir:39 72 IVDTFTGYF-NGIPVKKSHSDKETLSKLQEFDNLNDMEDEESELAKMACIYGRAFELLYQNE-ET---QTNVIYNTPENM 146 (453) T ss_pred HHHHHhhhh-cccCceeccCChHHHHHHHHHHHhcChhHHHHHHHHHHhhcCeEEEEEEecC-CC---ceEEEEEcccce Confidence 999999999 7777778888999999999999999999999999999999999999999874 33 688899999999 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccce Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) ||++++.....++.. .+|...++.. +|...+.++ .|..-. ..-+.| T Consensus 147 ~~v~d~~~~~~~~~~---ir~~~~~~~~---------~~~~~yt~~-------~i~~~~--~~~~~~------------- 192 (453) T protein:vir:39 147 FMVYDDTIKQEPLFA---VRYGYDDDYK---------LYGEVYTKE-------TTYALN--GTMGFY------------- 192 (453) T ss_pred EEEecCCCCCeEEEE---EEEEEeCCeE---------EEEEEEeCC-------eEEEEE--ecCCce------------- Confidence 999988665544332 2233222111 121111111 110000 000011 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG 312 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G 312 (527) ..++..+++++.||||+|+|. .+|.|+++++++|+|++|+++|+.+.+++++++|+++++|....+... T Consensus 193 ------~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~~p~~~~~g~~~~~~~~ 261 (453) T protein:vir:39 193 ------NMTEQAPNPFDDLPVVEFYFN-----EERMSIFESVISLVNAFNKAISEKANDVDYFSDQYLTFLGAAVEEEDL 261 (453) T ss_pred ------eeecccccCCCceeEEEecCC-----CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCCCchhh Confidence 123556899999999999995 379999999999999999999999999999999999998865433222 Q ss_pred cccceecCCCeeEec------CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 313 NMVPWTISPLGMVEH------GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 313 ~~~p~~v~pg~~~el------~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) + .+....+|.+ ++++.+..|....+.+.+++|+++|.+.|+..|++|.+.++.+ +..||.||+.+++ T Consensus 262 ~----~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~---gn~Sg~Al~~~~~ 334 (453) T protein:vir:39 262 K----NIRSNRVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESF---GSSSGVSLAYKLQ 334 (453) T ss_pred h----hhhhcceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc---cCChHHHHHHHHH Confidence 2 1223334433 3567777776556889999999999999999999999888644 3459999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) +|..|++++|..|+.+|.|+++ ++..++.. .+.......++|+|.+.+|.|.++.++.++++ +|++|.+|++ T Consensus 335 ~l~~ka~~~~~~~~~~l~~~~~-li~~~~~~-----~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~l 406 (453) T protein:vir:39 335 AMSNLALSFQRKFQSSLNSRYK-LYCELSTN-----VSNKEAWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQETAL 406 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-----cCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHH Confidence 9999999999999999999875 44444322 12233444578999999999999999998877 7999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC-CcccccccC Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI-PDEEDDQAL 522 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~-~d~~~~~~~ 522 (527) ++| ++ .++.+++.+|+++...... -.+. ....++.|. .+...++++ T Consensus 407 ~~l---~~----v~D~~~E~~ri~~E~~~~~-~~~~--~~~~~~~~~~~~~~~~~~e 453 (453) T protein:vir:39 407 SVI---SV----IPDVQAEMEKIKKEEASTA-IFDK--DKQPSEKGTDTVVPETNEE 453 (453) T ss_pred HhC---CC----CCCHHHHHHHHHHHHHHHH-HHHH--hccCCCCCCCCCCCCcCCC Confidence 876 22 3455666666664322111 1111 111222222 233334444 No 45 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=100.00 E-value=2.3e-53 Score=309.14 Aligned_cols=461 Identities=12% Similarity=0.066 Sum_probs=304.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeee-cCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVIL-RGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~-~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |-|+..-+.... ...+.-+...|..+..+++.+|+.|.+||.|+...+..-. +-.......++-.+-+++||++.++ T Consensus 27 ~~~~~~~~~~~~--~~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~ 104 (502) T protein:vir:48 27 IRYRADNLEELM--VNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLKSGRRKDNEMADKRAVHNYGRMISKFKTG 104 (502) T ss_pred hhhcccchhhhc--cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccceeecchHHHHHHHHhh Confidence 222221111100 0000111123334456778899999999999755432111 1111111235566779999999999 Q ss_pred hhccCccccccCc----chhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEE Q lcl|Aclame:pro 80 FLGQGLKWEFSKK----DAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPY 155 (527) Q Consensus 80 ~Lg~~~~~~i~~~----~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~ 155 (527) || +|.+..+++. ++.+++.|..|+++++|+.++.++.+.+.+.|.|+.+++.|. .+ ++.|+.++|.+.||+ T Consensus 105 yl-~g~p~~~~~~d~~~~~~~~~~l~~~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~de-dg---~~~i~~~~p~~~~~v 179 (502) T protein:vir:48 105 YL-AGNPIRVEYDDNEDNSQNDDAIKRIGRINDIDTHNRNLIRDLSQTGRAYEVIYRSE-YD---ETRIKRLSPLETFVI 179 (502) T ss_pred hh-cccCeeEecCCccchhHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCC-CC---ceEEEEEcccceEEE Confidence 99 6666555544 355788999999999999999999999999999998888874 33 688899999999999 Q ss_pred ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeee Q lcl|Aclame:pro 156 EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKL 235 (527) Q Consensus 156 ~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~ 235 (527) +++...++++..... |...++..-.. |...+.+ ..|. +|.. - T Consensus 180 ydd~~~~~~~~~ir~--~~~~~~~~~~~-------~~~iyt~-------~~i~----~~~~------------------~ 221 (502) T protein:vir:48 180 YDNSLEDNSIAAVRY--YNRGTLQNAKD-------VVEIYTN-------QHIY----TLDA------------------S 221 (502) T ss_pred EcCCCCCceEEEEEE--EEEeecCCcEE-------EEEEEeC-------CeEE----EEEe------------------C Confidence 988766665443212 33222211111 1111111 0110 1100 0 Q ss_pred ccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcC--CCCc Q lcl|Aclame:pro 236 STLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRD--SRGN 313 (527) Q Consensus 236 ~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d--~~G~ 313 (527) .....+...|++++.||||+|+|. .+|.|+++++++++|++|+++|+.+..+++++.|+++++|....+ ..|. T Consensus 222 ~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~ 296 (502) T protein:vir:48 222 DSFNEISVTPHAFGTVPITEFLNN-----ADGIGDYETELYLIDLYDSAESDTANHMSDMADAILAIYGDLALPQGMQAS 296 (502) T ss_pred CceeeccceecCCCccceEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCcccccccchh Confidence 011123456899999999999985 469999999999999999999999999999999999999865432 2333 Q ss_pred ccc----eec-CCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccH Q lcl|Aclame:pro 314 MVP----WTI-SPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAI 388 (527) Q Consensus 314 ~~p----~~v-~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PL 388 (527) ... +.+ .++.....++++++..|....+.+++++|++.|.+.||..|.+|.+.++.. ++.+||.||+..+++| T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~--~~n~Sg~Alk~~~~~l 374 (502) T protein:vir:48 297 DMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTPDMSDNHF--SGNASGEALKYKLFGL 374 (502) T ss_pred hhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCCCcCcccc--ccCchHHHHHHHHHHH Confidence 210 111 123333345677888887666889999999999999999999999998854 4567999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH Q lcl|Aclame:pro 389 LSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEE 468 (527) Q Consensus 389 lakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~ 468 (527) .+|+.+|+..|+.++.|++ .++..++... ..........++|+|.+.+|+|..++++.+++| +|++|.+|++++ T Consensus 375 ~~k~~~~~~~~~~~l~~~~-~li~~~~~~~---~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~l~~ 448 (502) T protein:vir:48 375 DQDRVDTQSQFTQGLKRRY-RLAARIGSLV---NEFKDFDESRLKITFTPNLPKSLYEQVSILNDL--GGQVSQETALSL 448 (502) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHhhc---ccccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHh Confidence 9999999999999999987 4444444221 111222344578999999999999999999888 699999999998 Q ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccc-ccccCCC--CcccccccCCCCC Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQ-MAAEQGI--PDEEDDQALNGQP 526 (527) Q Consensus 469 L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~-~~~d~g~--~d~~~~~~~~~~~ 526 (527) | +..++.+++.+|++.....+..-.-+.... ..++++. +++..|+.+|-.- T Consensus 449 l-------~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~~~~~~~ 502 (502) T protein:vir:48 449 S-------GLVENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDDFERVYE 502 (502) T ss_pred C-------CCCCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcCcCCCCC Confidence 6 234566777778775432211111121111 1222222 2344444444433 No 46 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=3.6e-53 Score=308.12 Aligned_cols=450 Identities=13% Similarity=0.124 Sum_probs=296.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCC-----CCChHHHHHHHHHHHHHHHhcCChhheEeeecC-CcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPN-----AVTDFDKARLASYRLYEDMYLTNTSDYQVILRG-GDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~-----~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g-~d~~~~~~~~~p~~~k~v 74 (527) |+ ...++.. -+-.....++.+|+.|.+||.|++. ++-.=+. ..+....++-.+-+++|| T Consensus 1 ~~--------------~~~~~d~~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~-i~~~~~~~~~~~~~~~~~~n~~~~iv 65 (488) T protein:vir:23 1 MA--------------ETESIDPEKLRDQLLDAFENKQNELKSSKAYYDAERR-PDAIGLAVPLDMRKYLAHVGYPRTYV 65 (488) T ss_pred CC--------------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhhcCcccchhhhhhhhhcchHHHHH Confidence 22 1111111 1112345677899999999999863 2211011 111112234456689999 Q ss_pred Hhhhhhhc-cCc--ccc----c-cCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCC----CCCccce Q lcl|Aclame:pro 75 EAKMRFLG-QGL--KWE----F-SKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDE----KDEGSRL 142 (527) Q Consensus 75 ~~~~~~Lg-~~~--~~~----i-~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~----k~~~~r~ 142 (527) ++.+.+|- .|| +.. + .+.++++++.|..|+++++|+.++.++++.+.+-|.|+.+|+.+.. .++-..+ T Consensus 66 d~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~~ 145 (488) T protein:vir:23 66 DAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEVP 145 (488) T ss_pred HHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCcc Confidence 99998882 222 111 1 3445778888989999999999999999999999999888876521 1112256 Q ss_pred EEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccc--ccccc Q lcl|Aclame:pro 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYE--PGKWD 220 (527) Q Consensus 143 ~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~--~g~wd 220 (527) .|+.++|.+.|+++|+.......+++. |...++.. .. +...|.++. + .+|. -++|. T Consensus 146 ~i~~~~p~~~~~~~d~~~~~~~~~~~~---~~~~~~~~-~~-------~~~~y~~~~-------~----~~~~~~~~~~~ 203 (488) T protein:vir:23 146 LIRVEPPTALYAEVDPRTRKVLYAIRA---IYGADGNE-IV-------SATLYLPDT-------T----MTWLRAEGEWE 203 (488) T ss_pred eEEEeccceeEEEEecCCCceEEEEEE---EEecCCCc-EE-------EEEEEecCc-------E----EEEEecCCceE Confidence 678899999999999765443444432 22333221 11 111111111 0 0111 01121 Q ss_pred ccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCce Q lcl|Aclame:pro 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGF 299 (527) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~ 299 (527) .++..|+++++||||+|+|.+...+++|+|+|++ +++|+|++|+++|++..++++++.|+ T Consensus 204 -------------------~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~ 264 (488) T protein:vir:23 204 -------------------APTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQ 264 (488) T ss_pred -------------------eccccccCCCCcceEEeccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHH Confidence 1234589999999999999988999999999985 89999999999999999999999999 Q ss_pred EEeccCCCcC-----CCCcccceecCCCeeEecCCC--CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccc Q lcl|Aclame:pro 300 YATDSAPPRD-----SRGNMVPWTISPLGMVEHGQN--NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDA 372 (527) Q Consensus 300 ~~~~g~~~~d-----~~G~~~p~~v~pg~~~el~~~--~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~ 372 (527) +++.|..+.+ .+|+ ..++.++|.+|.++++ .+|.+++. +++++|.++++.+...++.++.||..+||... T Consensus 265 ~~i~G~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~g~~~~~~q~~~-~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~- 341 (488) T protein:vir:23 265 RLIFGAKPEELGINAETGQ-RMFDAYMARILAFEGGEGAHAEQFSA-AELRNFVDALDALDRKAASYSGLPPQYLSSSS- 341 (488) T ss_pred HHHhCCCcccccccccccc-hhhhhhhhhhccCCCCCCceeEecCC-CChHHHHHHHHHHHHHHhcccCCCHHHhcccc- Confidence 9998876432 2333 2367888999998665 56778884 68999999999999999999999999998543 Q ss_pred cccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 373 AVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLL 452 (527) Q Consensus 373 s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v 452 (527) .+..||.||+..+++|+.|+++|+..|+.+|.|+++-+ .+++ +... .......++|+|.+++|+|..+.++.++ T Consensus 342 ~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~-~~~~----~~~~-~~~~~~~i~v~f~~~~~~s~~~~ada~~ 415 (488) T protein:vir:23 342 DNPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLA-YKMV----KGGD-IPTEYYRMETVWRDPSTPTYAAKADAAA 415 (488) T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----cCCC-cchhhccceEEecCCCCCCHHHHHHHHH Confidence 24459999999999999999999999999999987544 3332 2111 1112245778999999999999999999 Q ss_pred HHHhcC--CccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccccccc--------CCCCccccccc Q lcl|Aclame:pro 453 ELWEAG--LIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAE--------QGIPDEEDDQA 521 (527) Q Consensus 453 ~l~~aG--lls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d--------~g~~d~~~~~~ 521 (527) +|+++| ++|.+|++++| |+...+.++.+++.++...++..+ .+.+.+.+.++ ++.||++.+-+ T Consensus 416 kl~~~g~~~~s~et~~~~l---~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~a 488 (488) T protein:vir:23 416 KLFANGAGLIPRERGWVDM---GYTIVEREQMRQWLEQDQKQGLGL---IGSLYGASTPEGKPGEAPVGEPPAPEPDAA 488 (488) T ss_pred HHHhcccccCCHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHH---HHHHhccCCCcccCCCCCCCCCCCCCCCCC Confidence 999987 79999999876 332223333333322222222221 11111111111 12223333333 No 47 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=100.00 E-value=6.3e-53 Score=306.77 Aligned_cols=458 Identities=13% Similarity=0.103 Sum_probs=299.2 Q ss_pred CCC-------------ChhhhhhhhH-Hh-hcccCCC--------CCCChHHHHHHHHHHHHHHHhcCChhheEe-eecC Q lcl|Aclame:pro 1 MGQ-------------DKRQYGSTQQ-LR-AGEANFP--------NAVTDFDKARLASYRLYEDMYLTNTSDYQV-ILRG 56 (527) Q Consensus 1 m~~-------------~~~qy~~~~~-~~-~~~~~~~--------~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~-i~~g 56 (527) |-+ +.|-|-.++. |. ..+.+++ ..|..+...++.+|+.|.+||.|++..+.. ..+- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~~~~~~ 80 (501) T protein:vir:27 1 MEQTLFTDSTGQDLVLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLQFGRRK 80 (501) T ss_pred CCceeEEeccchhhhhhcccChhHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCccC Confidence 111 1111111111 11 1111111 122234567788999999999997544321 1111 Q ss_pred CcccccccccCCchhHHHHhhhhhhccCccccccCcc----hhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEe Q lcl|Aclame:pro 57 GDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKD----AKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIG 132 (527) Q Consensus 57 ~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~----~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~ 132 (527) +..+-..++-.|-+++||++.++|| +|.+..+++.+ +.+++.|..|++.++++.++.++.+.+.+.|.|+.++++ T Consensus 81 ~~~~~~~ki~~n~~k~Ivd~~~~yl-~g~p~~~~~~d~~~~~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ 159 (501) T protein:vir:27 81 DREMADKRAVHNYGRMISKFKTGYL-AGNPIRVEYDDNDNNSQNDDTIKRIGRINDIDSHNRTLIRDLSQTGRAYEVIYR 159 (501) T ss_pred ccccccceeccchHHHHHHHHhhhh-cccCeeEecCCccchHHHHHHHHHHHHhcChhHHHHHHHHHHhhCCeEEEEEEe Confidence 1111123455688999999999999 66666655554 557888999999999999999999999999999989988 Q ss_pred cCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeec Q lcl|Aclame:pro 133 DDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEE 212 (527) Q Consensus 133 d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~ 212 (527) |. .+ +|.|+.++|.+.||++|+...+++++. +..|...++..... |...+.+ ..+. T Consensus 160 de-d~---~~~i~~~~p~~~~~v~d~~~~~~~~~~--ir~~~~~~~~~~~~-------~~~vyt~-------~~v~---- 215 (501) T protein:vir:27 160 NE-YD---ETRIKRLNPLETFVIYDNSLEDNSIAA--VRYYNRGTLQNAKD-------VVEIYTN-------EHIY---- 215 (501) T ss_pred CC-CC---ceEEEEEccceeEEEecCCCCCceEEE--EEEEEeeecCCcEE-------EEEEEeC-------CeEE---- Confidence 74 23 788899999999999988766665443 22244332222111 1111111 0010 Q ss_pred ccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 213 LYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIM 292 (527) Q Consensus 213 ~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~ 292 (527) .|. .-.....+...|++++.||||+|+|. .+|.|+++++++|+|++|+++|+++..+ T Consensus 216 ~~~------------------~~~~~~~~~~~~~~~g~vPvv~~~nn-----~~g~sd~e~v~~liDa~d~~~S~~~~~~ 272 (501) T protein:vir:27 216 TLD------------------ASDDFNEISVTTHAFGTVPITEFLNN-----VDGIGDYETELYLIDLYDSAESDTANHM 272 (501) T ss_pred EEE------------------eCCceeeccccccCCCcccEEEecCC-----CCCCCchhhhHHHHHHHHHHHHHHHHHH Confidence 010 00111234556899999999999985 4799999999999999999999999999 Q ss_pred HHhCCceEEeccCCCcC--CCCccc----ceecC-CCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchh Q lcl|Aclame:pro 293 VFGGLGFYATDSAPPRD--SRGNMV----PWTIS-PLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDI 365 (527) Q Consensus 293 ~~~g~P~~~~~g~~~~d--~~G~~~----p~~v~-pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~v 365 (527) ++..+|++++.|....+ ..+... -+.+. ++.....+.++++..|....+.+++++|+++|.+.|+..|.+|.+ T Consensus 273 ~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~ 352 (501) T protein:vir:27 273 SDMADAILAIYGDLALPKGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNIPDM 352 (501) T ss_pred HHhcCceeeeecCccCCcccchhhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCCccc Confidence 99999999998865432 111110 11111 222233445567777776668899999999999999999999999 Q ss_pred hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-ccccceeEEEEeCCCCCCCH Q lcl|Aclame:pro 366 AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGID-DADKKLTVTITFRDPKPVNN 444 (527) Q Consensus 366 a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~-~~~~~~~v~v~w~d~lP~D~ 444 (527) .++.. ++.+||.||+..+++|..|+.+|+..|..+|.|+++ ++..++ .+... .......++|+|.+.+|.|. T Consensus 353 ~~~~~--~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~-li~~~~----~~~~~~~~~d~~~i~v~f~~~~p~n~ 425 (501) T protein:vir:27 353 SDTNF--SGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYR-LAARIG----SLVNEFKDFDESLLKITFTPNLPKSL 425 (501) T ss_pred Ccccc--ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH----hhcccccccccccceEEeCCCCCcCH Confidence 98854 456799999999999999999999999999999874 444443 22211 11223447899999999999 Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH--HhcCcccccc-c----ccCCCCccc Q lcl|Aclame:pro 445 EKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQA--EAADPFGAQM-A----AEQGIPDEE 517 (527) Q Consensus 445 ~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~--aa~d~~g~~~-~----~d~g~~d~~ 517 (527) .++++.+++| +|++|.+|++++| |..++.+++.+|+++...... ...+.+.... . ..+..+|+. T Consensus 426 ~e~ad~~~kl--~g~iS~et~l~~l-------~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~ 496 (501) T protein:vir:27 426 NEQVSILTGL--GGQVSQETALSLS-------GLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDF 496 (501) T ss_pred HHHHHHHHHH--hccCcHHHHHHhC-------CCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCccccc Confidence 9999999887 6999999999976 234455666666654322111 1111111111 1 112223444 Q ss_pred ccccC Q lcl|Aclame:pro 518 DDQAL 522 (527) Q Consensus 518 ~~~~~ 522 (527) .|..+ T Consensus 497 e~~~~ 501 (501) T protein:vir:27 497 ERAYE 501 (501) T ss_pred cccCC Confidence 44444 No 48 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=100.00 E-value=1.9e-52 Score=304.20 Aligned_cols=432 Identities=13% Similarity=0.125 Sum_probs=288.0 Q ss_pred CChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecC-CcccccccccCCchhHHHHhhhhhh Q lcl|Aclame:pro 3 QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRG-GDEGDQRPIYVPNGEKLIEAKMRFL 81 (527) Q Consensus 3 ~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g-~d~~~~~~~~~p~~~k~v~~~~~~L 81 (527) .+...=+-.+.++ ..-.+++.+|+.+.+||.|++. +...-+. ..+.....+-.+-+++||++.+++| T Consensus 1 ~~~~~~~~i~~l~-----------~~~~~~~~r~~~l~~Yy~G~~~-i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l 68 (441) T protein:vir:80 1 MNSDELALIEGMY-----------DRIQRLSSWHCCIEGYYEGSNR-VRDLGVAIPPELQRVQTVVSWPGIAVDALEERL 68 (441) T ss_pred CCccHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhcCCc-chhcCcccchhhhhhhhhcchHHHHHHHHHhhh Confidence 1111111111111 1224566789999999999864 2111000 0110112233466899999999999 Q ss_pred ccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCC Q lcl|Aclame:pro 82 GQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYP 161 (527) Q Consensus 82 g~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~ 161 (527) .. ..+++++. +.|..|++.++|..++.++.+.+.+-|+|+.+++-|. .+ .+.|+.++|.+.|+++|++.. T Consensus 69 ~~---~g~~~~d~---~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~-~g---~~~i~~~~p~~~~~i~d~~~~ 138 (441) T protein:vir:80 69 DW---LGWTNGDG---YGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHG-DG---TVSVRPQSPKNCTGKFSADGS 138 (441) T ss_pred cc---ccccCCCh---HHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCC-CC---ceEEEEEccceEEEEEeCCCC Confidence 32 22344443 3577888889999999999999999999988877653 33 677899999999999988765 Q ss_pred CceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCccc Q lcl|Aclame:pro 162 GQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEE 241 (527) Q Consensus 162 ~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e 241 (527) ..+.++++. .+.++ .. ..+..| .+ +.+ + ..++.+++. + ..+ T Consensus 139 ~~~~~~~~~-~~~~~--~~-----~~~~vy----~~-------~~~-~--~~~~~~~~~-----------~------~~~ 179 (441) T protein:vir:80 139 RLDAGLVVQ-QTCDP--EV-----VEAELL----LP-------DVI-V--QVERRGSRE-----------W------VEV 179 (441) T ss_pred ceeEEEEEE-EEecC--ce-----EEEEEE----ec-------CeE-E--EEEEcCCcc-----------e------eec Confidence 434443322 22211 10 011112 11 011 0 011111100 0 114 Q ss_pred ccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecC Q lcl|Aclame:pro 242 EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTIS 320 (527) Q Consensus 242 ~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~ 320 (527) +..|++++.||||+|+|.+...++||+|+|++ +++|+|++|+++||...++++++.|+++++|..+.+.+.+ .+... T Consensus 180 ~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~~--~~~~~ 257 (441) T protein:vir:80 180 DRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTGVSADEFSQP--GWVLS 257 (441) T ss_pred cccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeecCCccccccc--hhhhc Confidence 55789999999999999988999999999985 9999999999999999999999999999999875443222 25577 Q ss_pred CCeeEecCCCC-----ceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHH Q lcl|Aclame:pro 321 PLGMVEHGQNN-----KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQ 395 (527) Q Consensus 321 pg~~~el~~~~-----k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~k 395 (527) +|.+|.++.++ +|..++. ++++.|.++++.+...++.++.||..+||... .+..||.||+..+.+|..|+++| T Consensus 258 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~-~~~~Sg~Al~~~~~~l~~k~~~~ 335 (441) T protein:vir:80 258 MASVWAVDKDDDGDTPNVGSFPV-NSPTPYSDQMRLLAQLTAGEAAVPERYFGFIT-SNPPSGEALAAEESRLVKRAERR 335 (441) T ss_pred ccccccCCCCCCCCcceeEecCc-cchHHHHHHHHHHHHHHhcccCCCHHHhccCC-CcchHHHHHHHHHHHHHHHHHHH Confidence 89999987653 5566663 58899999999999999999999999998432 23349999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHhc Q lcl|Aclame:pro 396 ELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI--PAKKLTEELSKIM 473 (527) Q Consensus 396 rl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll--s~~ta~~~L~~~g 473 (527) +..|+.+|.|+++ ++.+++ +...........++++|.+++|.|..++++.+++|+++|++ |++++++.| T Consensus 336 ~~~f~~~l~~~~~-l~~~~~----~~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l---- 406 (441) T protein:vir:80 336 QTSFGQGWLSVGF-LAAKAL----DSRVDEADFFGDVGLRWRDASTPTRAATADAVTKLVGAGILPADSRTVLEML---- 406 (441) T ss_pred HHHHHHHHHHHHH-HHHHHh----cCCCcccccceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhC---- Confidence 9999999998875 444443 22222223345678899999999999999999999999986 455665543 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 474 GFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 474 ~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) +.+.++++++.++ ++++. ++.+..++.-.+.||+= T Consensus 407 --~~~~~e~~~~~~e-~~e~~------~~~~~~~~~~~~~~~~~ 441 (441) T protein:vir:80 407 --GLDDVQVEAVMRH-RAESS------DPLAVLAGAISRQTNEV 441 (441) T ss_pred --CCCHHHHHHHHHH-HHHHH------HHHHHHhhhhhcccccC Confidence 3566666654332 22221 22222222222333332 No 49 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=7.9e-53 Score=306.23 Aligned_cols=463 Identities=11% Similarity=0.114 Sum_probs=299.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEee-ecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI-LRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i-~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |++-+.-.+-+..=- .+...+-.....|+.+|++|.+||.|++.- +-. ..=..+......-.+=+++||++.++ T Consensus 1 ~~~~~~~~~e~~~~~----~~~~~l~~~~~~~~~r~~~l~~YY~G~~~i-~~~~~~~~~~~~~~~~v~n~~~~iVd~~~~ 75 (486) T protein:vir:42 1 MTAPLPGMEEIEDPA----VVREEMISAFEDASKDLASNTSYYDAERRP-EAIGVTVPREMQQLLAHVGYPRLYVDSVAE 75 (486) T ss_pred CCCCCCCCCCcccHH----HHHHHHHHHHHHHHHHHHHHHHHhcccCcc-hhcccccchhHhhhhhccchHHHHHHHHHh Confidence 665554432221100 001112235567889999999999999632 111 00011111111123558999999999 Q ss_pred hhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCC----CCccceEEEEEccceEEEE Q lcl|Aclame:pro 80 FLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEK----DEGSRLSLHEVDPSTYFPY 155 (527) Q Consensus 80 ~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k----~~~~r~~i~~vdP~~~fp~ 155 (527) +| ..-++.+. .++..++.+..|+++|+|+.++.++.+.|.+-|.|+.+|+.+... ....++.|+.++|...|++ T Consensus 76 ~l-~~~g~~~~-~~~~~~~~~~~i~~~N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i 153 (486) T protein:vir:42 76 RQ-AVEGFRLG-DADEADEELWQWWQANNLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAE 153 (486) T ss_pred hh-cccceecC-CCchhHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEE Confidence 99 33334332 345556667778888999999999999999999998888765311 1123678899999999999 Q ss_pred ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeee Q lcl|Aclame:pro 156 EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKL 235 (527) Q Consensus 156 ~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~ 235 (527) +|+... +++..... |...+ .+. +++...|.++. +..- ...-++|. T Consensus 154 ~d~~~~-~~~~~~~~--~~~~~-~~~-------~~~~~~y~~~~-------~~~~--~~~~~~~~--------------- 198 (486) T protein:vir:42 154 IDPRIN-RVSKAIRV--AYDKE-GNE-------IQAATLYTPME-------TIGW--FRADGEWA--------------- 198 (486) T ss_pred EeCCCC-CeEEEEEE--EEecC-CCe-------EEEEEEEcCCc-------EEEE--EecCCcEE--------------- Confidence 998654 44433212 22222 111 11222222211 1000 00111121 Q ss_pred ccCcccccccccccccceEeeCCCCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc-----C Q lcl|Aclame:pro 236 STLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR-----D 309 (527) Q Consensus 236 ~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~-----d 309 (527) .++..|++++.||||+|+|.+...++||.|+|+. +++|+|++|+++|++..++++++.|++++.|..+. + T Consensus 199 ----~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~~~ 274 (486) T protein:vir:42 199 ----EWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGVDS 274 (486) T ss_pred ----eecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCcccccccc Confidence 1345689999999999999988899999999995 89999999999999999999999999999887642 2 Q ss_pred CCCcccceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccH Q lcl|Aclame:pro 310 SRGNMVPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAI 388 (527) Q Consensus 310 ~~G~~~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PL 388 (527) .+|+.. +...+|.||.++ ++.+|.+++. ++++.|.++++.+...++.++.||..+||.... +..||.||+..+.+| T Consensus 275 ~~~~~~-~~~~~~~~~~~~~~~~~~~q~~~-~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~-n~~Sg~Al~~~~~~l 351 (486) T protein:vir:42 275 ETGQTL-FDAYLARILAFEDAEGKIQQFSA-AELANFTNALDQIAKQVAAYTGLPPQYLSTAAD-NPASAEAIRAAESRL 351 (486) T ss_pred ccccch-hhhhhchhcccCCCCceEEeecc-cCHHHHHHHHHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHHHHH Confidence 345433 667889999875 6799999984 689999999999999999999999999984432 334999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc--CCccHHHHH Q lcl|Aclame:pro 389 LSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA--GLIPAKKLT 466 (527) Q Consensus 389 lakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a--Glls~~ta~ 466 (527) +.|+++|+..|+.+|.|+++ ++..++ +.... ......++|+|.+++|+|..+.++.+++|+++ |++|.++++ T Consensus 352 ~~ka~~~~~~f~~~l~~~~~-l~~~~~----~~~~~-~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~ 425 (486) T protein:vir:42 352 IKKVERKNLMFGGAWEEAMR-IAYRIM----KGGDV-PPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERAR 425 (486) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHh----cCCCc-cccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHH Confidence 99999999999999999875 333332 21111 11234577899999999999999999999997 789999998 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHH----HHHH-HHhcCccccccc-ccCCCC---cccccccCCCC Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQ----GIAQ-AEAADPFGAQMA-AEQGIP---DEEDDQALNGQ 525 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~----a~~~-~aa~d~~g~~~~-~d~g~~---d~~~~~~~~~~ 525 (527) ++| | ++++..+ +.++++.+ +... .+..+....... .+.+.+ +.+..++++.- T Consensus 426 ~~l---g---~~~d~~~-e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (486) T protein:vir:42 426 IDM---G---YSVKERE-EMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPPKPQPAIESSGGDA 486 (486) T ss_pred hcC---C---CChhHHH-HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcccCCCCCCC Confidence 865 3 4444333 23333222 1111 111222111111 111111 11111122222 No 50 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=4.6e-52 Score=302.03 Aligned_cols=442 Identities=12% Similarity=0.107 Sum_probs=293.6 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHH--------HHHHHHHHHHHHhcCChhheEeeec----------------- Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDK--------ARLASYRLYEDMYLTNTSDYQVILR----------------- 55 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~--------~Rl~aY~~~~~~y~~~~~~~~~i~~----------------- 55 (527) |- ...|+..... ..++.++. .++..|..+..||.|...-....-| T Consensus 1 ~~--------~~~~~~~~~~--~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (474) T protein:vir:10 1 MT--------LYKLIDDIEA--QGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRR 70 (474) T ss_pred Cc--------hHHHHhhccc--cCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccc Confidence 32 2233333333 33333222 2234444455555443221111110 Q ss_pred CCcccccccccCCchhHHHHhhhhhhccCccccccC-----cchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEE Q lcl|Aclame:pro 56 GGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSK-----KDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLL 130 (527) Q Consensus 56 g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~-----~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i 130 (527) -....+ .++-.|-+++||++.++|| +|.+-.+++ .++++++.|.+|+++++++.++.++.+++.+.|.|+.++ T Consensus 71 ~~~~~~-~ki~~n~~~~ivd~~~~yl-~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~ 148 (474) T protein:vir:10 71 LDVSVN-NKLNNSFDSEIVDTRVGYL-HGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLA 148 (474) T ss_pred cccCcc-cccccchHHHHHHhHhhhe-eccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEE Confidence 000001 2355677999999999999 665555443 356789999999999999999999999999999988777 Q ss_pred EecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceee Q lcl|Aclame:pro 131 IGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYT 210 (527) Q Consensus 131 ~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~ 210 (527) +.|. .+ ++.++.++|.+.||++|.. .....+|++ |.+.+.++.. . ..+ ...+.+. .+ T Consensus 149 ~~d~-~~---~~~~~~i~p~~~~~v~d~~-~~~~~~i~~-~~~~~~~~~~--~--~~~---~~~y~~~-------~~--- 205 (474) T protein:vir:10 149 YIDT-NG---DIRIKNIDPYNVIFVGDNI-LEPTYSLRY-FYEKDDDNGT--D--YVY---AEFYDNA-------YY--- 205 (474) T ss_pred EeCC-CC---eeEEEEEcccceEEEEcCC-CceEEEEEE-EEEeeCCCce--E--EEE---EEEEcCc-------eE--- Confidence 7663 33 7889999999999999643 233333332 1122111111 0 000 0001000 00 Q ss_pred ecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 211 EELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDL 290 (527) Q Consensus 211 ~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~ 290 (527) ..|.-.+ ......+...++++++||||+|+|. .+|.|+++++++|+|++|.++|+.+. T Consensus 206 -~~~~~~~----------------~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~liDa~d~~~S~~~~ 263 (474) T protein:vir:10 206 -YVFRGEG----------------IDALQEVGRYEHLFDYNPLFGVPNN-----KEMIGDAEKVIHLIDAYDLTMSDASS 263 (474) T ss_pred -EEEeecC----------------CCcccccccccCCCCccceEEecCC-----CCCCCchHHHHHHHHHHHHHHHHHHH Confidence 0110000 0011234557899999999999995 47999999999999999999999999 Q ss_pred HHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccc Q lcl|Aclame:pro 291 IMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVV 370 (527) Q Consensus 291 i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~ 370 (527) .++++++|+++++|....+..+.. .-..|.++-.++++++..|....+.+++++|+++|.+.|+..|++|.+.++.+ T Consensus 264 ~~~~~~~~~l~i~g~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~ 340 (474) T protein:vir:10 264 EISQTRLAYLVLRGMGMSEEMIQE---TQKSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEF 340 (474) T ss_pred HHHHhhcchhhhccCCCCchhhhh---hhhcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccc Confidence 999999999999997543322221 12347777789999999998777899999999999999999999999998855 Q ss_pred cccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--cccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 371 DAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDD--ADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 371 d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~--~~~~~~v~v~w~d~lP~D~~~~i 448 (527) . ++.||.||+..|++|..|+++++..|..+|.|+++-+ ..+| +..... ......++|+|.+.+|+|..+++ T Consensus 341 ~--~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li-~~~l----~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a 413 (474) T protein:vir:10 341 N--GNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVI-LSAL----KRKGYNLDDDSYLNLIFKFTRNIPVNKLEES 413 (474) T ss_pred c--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----hhccCCCCccccccceEEeCCCCCCCHHHHH Confidence 3 5679999999999999999999999999999987544 3343 222111 12234578999999999999999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +.+++| .|++|.+|++++| +..++.+++.+++++.. ++.+-..+-...+..|++-++.++| T Consensus 414 ~~~~kl--~g~iS~et~~~~l-------~~v~d~~~E~eri~~E~-~e~~~~~~~~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:10 414 QVLINL--KGQVSERTRLGQS-------QLVDDVDYELDEMEKES-LEFNDKLPDIDEGDANDKSQNNQSE 474 (474) T ss_pred HHHHHH--hccCchHHHHHhC-------CCCCCHHHHHHHHHHHH-HHHHhhcccccCCCcCCCCccccCC Confidence 999887 5999999999987 33556778888886532 2222222222233344444444444 No 51 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=4.6e-52 Score=302.03 Aligned_cols=442 Identities=12% Similarity=0.107 Sum_probs=293.6 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHH--------HHHHHHHHHHHHhcCChhheEeeec----------------- Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDK--------ARLASYRLYEDMYLTNTSDYQVILR----------------- 55 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~--------~Rl~aY~~~~~~y~~~~~~~~~i~~----------------- 55 (527) |- ...|+..... ..++.++. .++..|..+..||.|...-....-| T Consensus 1 ~~--------~~~~~~~~~~--~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (474) T protein:vir:94 1 MT--------LYKLIDDIEA--QGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRR 70 (474) T ss_pred Cc--------hHHHHhhccc--cCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccc Confidence 32 2233333333 33333222 2234444455555443221111110 Q ss_pred CCcccccccccCCchhHHHHhhhhhhccCccccccC-----cchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEE Q lcl|Aclame:pro 56 GGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSK-----KDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLL 130 (527) Q Consensus 56 g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~-----~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i 130 (527) -....+ .++-.|-+++||++.++|| +|.+-.+++ .++++++.|.+|+++++++.++.++.+++.+.|.|+.++ T Consensus 71 ~~~~~~-~ki~~n~~~~ivd~~~~yl-~g~pv~~~~~~~~~~~e~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~a~~~~ 148 (474) T protein:vir:94 71 LDVSVN-NKLNNSFDSEIVDTRVGYL-HGVPVTYDLDENAEKNEKLKKFITNFAIRNSVDDEDSEIGKMAAICGYGARLA 148 (474) T ss_pred cccCcc-cccccchHHHHHHhHhhhe-eccceeEeeCCCCcchHHHHHHHHHHHhhcCHhHHHHHHHHHHhhcCeEEEEE Confidence 000001 2355677999999999999 665555443 356789999999999999999999999999999988777 Q ss_pred EecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceee Q lcl|Aclame:pro 131 IGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYT 210 (527) Q Consensus 131 ~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~ 210 (527) +.|. .+ ++.++.++|.+.||++|.. .....+|++ |.+.+.++.. . ..+ ...+.+. .+ T Consensus 149 ~~d~-~~---~~~~~~i~p~~~~~v~d~~-~~~~~~i~~-~~~~~~~~~~--~--~~~---~~~y~~~-------~~--- 205 (474) T protein:vir:94 149 YIDT-NG---DIRIKNIDPYNVIFVGDNI-LEPTYSLRY-FYEKDDDNGT--D--YVY---AEFYDNA-------YY--- 205 (474) T ss_pred EeCC-CC---eeEEEEEcccceEEEEcCC-CceEEEEEE-EEEeeCCCce--E--EEE---EEEEcCc-------eE--- Confidence 7663 33 7889999999999999643 233333332 1122111111 0 000 0001000 00 Q ss_pred ecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 211 EELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDL 290 (527) Q Consensus 211 ~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~ 290 (527) ..|.-.+ ......+...++++++||||+|+|. .+|.|+++++++|+|++|.++|+.+. T Consensus 206 -~~~~~~~----------------~~~~~~~~~~~~~~g~vPvv~~~n~-----~~g~sd~e~v~~liDa~d~~~S~~~~ 263 (474) T protein:vir:94 206 -YVFRGEG----------------IDALQEVGRYEHLFDYNPLFGVPNN-----KEMIGDAEKVIHLIDAYDLTMSDASS 263 (474) T ss_pred -EEEeecC----------------CCcccccccccCCCCccceEEecCC-----CCCCCchHHHHHHHHHHHHHHHHHHH Confidence 0110000 0011234557899999999999995 47999999999999999999999999 Q ss_pred HHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccc Q lcl|Aclame:pro 291 IMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVV 370 (527) Q Consensus 291 i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~ 370 (527) .++++++|+++++|....+..+.. .-..|.++-.++++++..|....+.+++++|+++|.+.|+..|++|.+.++.+ T Consensus 264 ~~~~~~~~~l~i~g~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~ 340 (474) T protein:vir:94 264 EISQTRLAYLVLRGMGMSEEMIQE---TQKSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEF 340 (474) T ss_pred HHHHhhcchhhhccCCCCchhhhh---hhhcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccc Confidence 999999999999997543322221 12347777789999999998777899999999999999999999999998855 Q ss_pred cccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--cccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 371 DAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDD--ADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 371 d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~--~~~~~~v~v~w~d~lP~D~~~~i 448 (527) . ++.||.||+..|++|..|+++++..|..+|.|+++-+ ..+| +..... ......++|+|.+.+|+|..+++ T Consensus 341 ~--~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li-~~~l----~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a 413 (474) T protein:vir:94 341 N--GNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVI-LSAL----KRKGYNLDDDSYLNLIFKFTRNIPVNKLEES 413 (474) T ss_pred c--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----hhccCCCCccccccceEEeCCCCCCCHHHHH Confidence 3 5679999999999999999999999999999987544 3343 222111 12234578999999999999999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +.+++| .|++|.+|++++| +..++.+++.+++++.. ++.+-..+-...+..|++-++.++| T Consensus 414 ~~~~kl--~g~iS~et~~~~l-------~~v~d~~~E~eri~~E~-~e~~~~~~~~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:94 414 QVLINL--KGQVSERTRLGQS-------QLVDDVDYELDEMEKES-LEFNDKLPDIDEGDANDKSQNNQSE 474 (474) T ss_pred HHHHHH--hccCchHHHHHhC-------CCCCCHHHHHHHHHHHH-HHHHhhcccccCCCcCCCCccccCC Confidence 999887 5999999999987 33556778888886532 2222222222233344444444444 No 52 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=1.8e-52 Score=304.23 Aligned_cols=434 Identities=14% Similarity=0.100 Sum_probs=296.1 Q ss_pred CCCCChH---------HHHHHHHHHHHHHHhcCChhheEeeecCC-ccccc--ccccCCchhHHHHhhhhhhccCccccc Q lcl|Aclame:pro 22 PNAVTDF---------DKARLASYRLYEDMYLTNTSDYQVILRGG-DEGDQ--RPIYVPNGEKLIEAKMRFLGQGLKWEF 89 (527) Q Consensus 22 ~~~v~~~---------d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~-d~~~~--~~~~~p~~~k~v~~~~~~Lg~~~~~~i 89 (527) |...+++ ...++.+|+.+.+||.|++. ++.+-+.- ++... ..+-.+-+++||++.++|| ++.+..+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~-i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l-~~~~~~~ 78 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP-LPELTRNTSAAWRSFQREARTNWGLMVRDSVADRI-IPNGITV 78 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhcCcccChhhhhhhhhhhcchHHHHHHHHHhhh-ccCCeec Confidence 3333332 23577899999999999874 32221111 11111 1123455899999999999 5555555 Q ss_pred cCc-chhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEE Q lcl|Aclame:pro 90 SKK-DAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVY 168 (527) Q Consensus 90 ~~~-~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh 168 (527) ... +++.++.+..|+++|+|+.++.++++++.+-|.|+.+++-| ..+ .+.|+.++|...|+++|+.....+.++ T Consensus 79 ~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d-~~g---~~~i~~~~p~~~~~i~d~~~~~~~~~~- 153 (456) T protein:vir:10 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR-DDG---TATITADSPETMVVSVDPLQPWRIRAA- 153 (456) T ss_pred CCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeC-CCC---ceEEEEEccceeEEEEcCCCCcceEEE- Confidence 433 45667778888889999999999999999999986555543 333 677889999999999998766655554 Q ss_pred EEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccc Q lcl|Aclame:pro 169 LVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQI 248 (527) Q Consensus 169 ~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi 248 (527) +..|+++++..- ..+ .| .+++. .+..+... ..|. .+.....+..+.+ ..+..-+++. T Consensus 154 -i~~~~~~d~~~~-~~~----~~----~~~~~--~~~~~~~~-~~~~----~~~~~~~~~~~~~------~~~~~~~~~~ 210 (456) T protein:vir:10 154 -MRWWRDLDAESD-FAI----VW----SGDGW--QKFARPCF-VQSS----SRRRLVTRISDSW------VPVGDAVVTG 210 (456) T ss_pred -EEEEEecCCcee-EEE----EE----eccce--eEEEEEEE-Eeec----ccceeeeecCCce------eeccccCCCC Confidence 223566554331 111 11 11110 00000000 0000 0000000000000 0123347788 Q ss_pred cccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC----cCCCCccc----ceecC Q lcl|Aclame:pro 249 TTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP----RDSRGNMV----PWTIS 320 (527) Q Consensus 249 ~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~----~d~~G~~~----p~~v~ 320 (527) ++||||.++|. +|.|+++++++++|++|+++||...++++++.|+.++.|..+ .|.+|+.. .++.. T Consensus 211 ~~~pvv~~~N~------~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~ 284 (456) T protein:vir:10 211 SPPPVVVYQNP------DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAA 284 (456) T ss_pred CceeEEEecCC------CCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhh Confidence 99999999874 699999999999999999999999999999999999888542 45667653 35678 Q ss_pred CCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 321 PLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELK 400 (527) Q Consensus 321 pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~ 400 (527) +|.+|.++++.+|.+++ .+++++|.+.++.+...++..++||...||. .++.+||.||+..+.+|+.|+++||..|+ T Consensus 285 ~~~~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~--~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~ 361 (456) T protein:vir:10 285 PGALWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMP--DSANQSAEGAHNIEKGFLFKCEDRLSIAK 361 (456) T ss_pred ccccccCCCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcc--cccChHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999998 4799999999999999999999999999994 23456999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH Q lcl|Aclame:pro 401 SVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE 480 (527) Q Consensus 401 ~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~ 480 (527) .+|.|+++.+. + .++ ......++|+|.+++|+|.++.++.+++|+++|++|.+++.++| +++.+ T Consensus 362 ~~l~~~~rl~~-~----~~g-----~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~l------g~~~~ 425 (456) T protein:vir:10 362 IGLEAILVKAL-Q----IEG-----ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL------NYNAD 425 (456) T ss_pred HHHHHHHHHHH-H----hcC-----CCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhC------CCCHH Confidence 99998875432 1 111 12234678999999999999999999999999999999998866 34444 Q ss_pred HHH-HHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 481 DFR-QATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 481 ~~~-~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) +++ .+.++++.+.. ..++++ ...+.|+++- T Consensus 426 ~i~~~e~er~~~e~~--~~~~~~------~~~~~~~~~~ 456 (456) T protein:vir:10 426 QIKQDDLDRAREQIT--LFAGNP------VQRPQEDGSR 456 (456) T ss_pred HHHHHHHHHHHHHHH--HHhhhh------hhcCCCCCCC Confidence 443 34445443321 111221 1112233322 No 53 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=1.8e-52 Score=304.23 Aligned_cols=434 Identities=14% Similarity=0.100 Sum_probs=296.1 Q ss_pred CCCCChH---------HHHHHHHHHHHHHHhcCChhheEeeecCC-ccccc--ccccCCchhHHHHhhhhhhccCccccc Q lcl|Aclame:pro 22 PNAVTDF---------DKARLASYRLYEDMYLTNTSDYQVILRGG-DEGDQ--RPIYVPNGEKLIEAKMRFLGQGLKWEF 89 (527) Q Consensus 22 ~~~v~~~---------d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~-d~~~~--~~~~~p~~~k~v~~~~~~Lg~~~~~~i 89 (527) |...+++ ...++.+|+.+.+||.|++. ++.+-+.- ++... ..+-.+-+++||++.++|| ++.+..+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~-i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l-~~~~~~~ 78 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP-LPELTRNTSAAWRSFQREARTNWGLMVRDSVADRI-IPNGITV 78 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-chhcCcccChhhhhhhhhhhcchHHHHHHHHHhhh-ccCCeec Confidence 3333332 23577899999999999874 32221111 11111 1123455899999999999 5555555 Q ss_pred cCc-chhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEE Q lcl|Aclame:pro 90 SKK-DAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVY 168 (527) Q Consensus 90 ~~~-~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh 168 (527) ... +++.++.+..|+++|+|+.++.++++++.+-|.|+.+++-| ..+ .+.|+.++|...|+++|+.....+.++ T Consensus 79 ~~~~d~~~~~~~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~d-~~g---~~~i~~~~p~~~~~i~d~~~~~~~~~~- 153 (456) T protein:vir:10 79 GGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR-DDG---TATITADSPETMVVSVDPLQPWRIRAA- 153 (456) T ss_pred CCCCCcchHHHHHHHHHhcChhhHHHHHHHHHhhcCeeEEEEeeC-CCC---ceEEEEEccceeEEEEcCCCCcceEEE- Confidence 433 45667778888889999999999999999999986555543 333 677889999999999998766655554 Q ss_pred EEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccc Q lcl|Aclame:pro 169 LVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQI 248 (527) Q Consensus 169 ~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi 248 (527) +..|+++++..- ..+ .| .+++. .+..+... ..|. .+.....+..+.+ ..+..-+++. T Consensus 154 -i~~~~~~d~~~~-~~~----~~----~~~~~--~~~~~~~~-~~~~----~~~~~~~~~~~~~------~~~~~~~~~~ 210 (456) T protein:vir:10 154 -MRWWRDLDAESD-FAI----VW----SGDGW--QKFARPCF-VQSS----SRRRLVTRISDSW------VPVGDAVVTG 210 (456) T ss_pred -EEEEEecCCcee-EEE----EE----eccce--eEEEEEEE-Eeec----ccceeeeecCCce------eeccccCCCC Confidence 223566554331 111 11 11110 00000000 0000 0000000000000 0123347788 Q ss_pred cccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC----cCCCCccc----ceecC Q lcl|Aclame:pro 249 TTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP----RDSRGNMV----PWTIS 320 (527) Q Consensus 249 ~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~----~d~~G~~~----p~~v~ 320 (527) ++||||.++|. +|.|+++++++++|++|+++||...++++++.|+.++.|..+ .|.+|+.. .++.. T Consensus 211 ~~~pvv~~~N~------~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~~ 284 (456) T protein:vir:10 211 SPPPVVVYQNP------DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEAA 284 (456) T ss_pred CceeEEEecCC------CCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhhh Confidence 99999999874 699999999999999999999999999999999999888542 45667653 35678 Q ss_pred CCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHH Q lcl|Aclame:pro 321 PLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELK 400 (527) Q Consensus 321 pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~ 400 (527) +|.+|.++++.+|.+++ .+++++|.+.++.+...++..++||...||. .++.+||.||+..+.+|+.|+++||..|+ T Consensus 285 ~~~~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~--~~~N~Sg~Ai~~~~~~l~~k~~~~~~~f~ 361 (456) T protein:vir:10 285 PGALWELPPGVDIWESQ-ANDFTPMLSAIKEHIRQLSSATKTPLPMLMP--DSANQSAEGAHNIEKGFLFKCEDRLSIAK 361 (456) T ss_pred ccccccCCCCcceEEec-ccChhHHHHHHHHHHHHHHhccCCChHHhcc--cccChHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999998 4799999999999999999999999999994 23456999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH Q lcl|Aclame:pro 401 SVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE 480 (527) Q Consensus 401 ~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~ 480 (527) .+|.|+++.+. + .++ ......++|+|.+++|+|.++.++.+++|+++|++|.+++.++| +++.+ T Consensus 362 ~~l~~~~rl~~-~----~~g-----~~~~~~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~l------g~~~~ 425 (456) T protein:vir:10 362 IGLEAILVKAL-Q----IEG-----ESVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL------NYNAD 425 (456) T ss_pred HHHHHHHHHHH-H----hcC-----CCcccceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhC------CCCHH Confidence 99998875432 1 111 12234678999999999999999999999999999999998866 34444 Q ss_pred HHH-HHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 481 DFR-QATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 481 ~~~-~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) +++ .+.++++.+.. ..++++ ...+.|+++- T Consensus 426 ~i~~~e~er~~~e~~--~~~~~~------~~~~~~~~~~ 456 (456) T protein:vir:10 426 QIKQDDLDRAREQIT--LFAGNP------VQRPQEDGSR 456 (456) T ss_pred HHHHHHHHHHHHHHH--HHhhhh------hhcCCCCCCC Confidence 443 34445443321 111221 1112233322 No 54 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=6.9e-52 Score=301.07 Aligned_cols=464 Identities=12% Similarity=0.101 Sum_probs=297.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHH-----------HHHHHHHHHHHHHhcCChhheEeeecC-CcccccccccCC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFD-----------KARLASYRLYEDMYLTNTSDYQVILRG-GDEGDQRPIYVP 68 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d-----------~~Rl~aY~~~~~~y~~~~~~~~~i~~g-~d~~~~~~~~~p 68 (527) |--+ --+++.|-..-.+ +++.| .++..+|+++.+||.|.+. ++-+-.. .++......-.+ T Consensus 1 ~~~~---~~~~~~~~~~~~~----l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~-i~~~~~~~p~~~~~~~~v~n 72 (504) T protein:vir:99 1 MTEE---TTSASKFTFRIPE----LNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYA-IRQIGNLIPPEYLRTATVLG 72 (504) T ss_pred CCcc---CCcccccccccCC----CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc-chhccccccHHHHHHhhccC Confidence 2111 1122222222222 33333 3566799999999999853 2221000 111111111235 Q ss_pred chhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) -++|+|++.+.+|.+ ..+....+.+.++.|..|+++|+|+.+..++++.|++-|.|+..|+-+.. +. .+++|+.++ T Consensus 73 ~~~~iVd~~a~rl~~--~Gf~~~d~~~~~~~l~~i~~~N~ld~~~~~~~~~a~iyG~af~~v~~~~d-~~-~~~~I~~~s 148 (504) T protein:vir:99 73 WSAKAVDTLARRCNL--ESFVWPDGDYGSIGGPDVWDENFFATKANNAMVSSLIHGPAFLINTEGGA-GE-PDSLIHVKS 148 (504) T ss_pred cHHHHHHHHHhhhcc--ceeeCCCCChhhHHHHHHHHhcChhhHHHHHHHHHHhhCceeEEEecCCC-CC-ceeEEEEec Confidence 588999999998833 22223344556677888999999999999999999999999888775532 11 267889999 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |...|.++||.. +++......+. .+.++.. ..+ ..| .+ +.+. +...-.-+.|. T Consensus 149 P~~~~~iyD~~~-~~~~~a~~~~~-~d~~g~~--~~~---~~y----~~-------~~~~-~~~~~~~~~~~-------- 201 (504) T protein:vir:99 149 AMQATGEWNSRR-NAMDSLLSITS-RDAEGHP--TGI---ALY----ED-------GVTV-TADMDDDGDWH-------- 201 (504) T ss_pred cceeEEEEeCCC-CceeEEEEEEE-ecCCCeE--EEE---EEE----cC-------CcEE-EEEEcCCceee-------- Confidence 999999998754 45554433332 2222111 100 011 10 1110 00000001111 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCcccc-chHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLA-GLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Le-dl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) .+.-+++++ +|||+|+|.+...+++|.|+|+ .+++|+|++|+++++...+++|++.|..++.|+.+ T Consensus 202 ------------~~~~~~~~g-vPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G~~~ 268 (504) T protein:vir:99 202 ------------ADVRTHKLG-VPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLGADA 268 (504) T ss_pred ------------eccccCCCC-cceEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhccCCc Confidence 234478888 8999999998889999999997 79999999999999999999999999999999875 Q ss_pred c---CCCCccc-ceecCCCeeEecCCC----------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccc Q lcl|Aclame:pro 308 R---DSRGNMV-PWTISPLGMVEHGQN----------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAA 373 (527) Q Consensus 308 ~---d~~G~~~-p~~v~pg~~~el~~~----------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s 373 (527) . +.+|++. .|....+.||.++++ .+|++++. +++.+|.++++.+...++.+++||..+||.+..+ T Consensus 269 ~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~~~-~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~ 347 (504) T protein:vir:99 269 KNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVKQFPA-SSPQPHIEMLEQIAMMFSGETSIPVESLGFSNRA 347 (504) T ss_pred cccccccccccchhhhhhhhhhcCCCccccccccCccceeeecCC-CChHHHHHHHHHHHHHHHhhhCCCHHHhcccccc Confidence 3 3567753 467888999988754 56888884 6899999999999999999999999999966444 Q ss_pred ccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 374 VAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLE 453 (527) Q Consensus 374 ~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~ 453 (527) +..||.||+..+.+|+.|+++||..|+.+|+|++| |+.+++.... .....-..++++|.++.|+|.+++++.++| T Consensus 348 n~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~~r-la~~~~~~~~----~~~~~~~~~~v~w~d~~~~s~a~~aDa~~K 422 (504) T protein:vir:99 348 NPTSADAYIASREDLIAEAEGATDDWSPAFRRSMI-RALAIKNGLD----RIPPEWKTIDSKFRSPLYLSKAAQADAGAK 422 (504) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCCC----ccccccccceeEecCCCccCHHHHHHHHHH Confidence 45699999999999999999999999999999875 3333332211 112223456789999999999999999999 Q ss_pred HHhcCC--ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHH-HHHHHH-HhcCcccccccccCCCCcccccccC------- Q lcl|Aclame:pro 454 LWEAGL--IPAKKLTEELSKIMGFELTEEDFRQATEDKKT-QGIAQA-EAADPFGAQMAAEQGIPDEEDDQAL------- 522 (527) Q Consensus 454 l~~aGl--ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~-~a~~~~-aa~d~~g~~~~~d~g~~d~~~~~~~------- 522 (527) |+++|. ++.++++..+ + +++.++++++.+...+ ++.+.. ++.++......++++.++.+.+-.. T Consensus 423 l~~ag~~l~~~~~~l~~~--l---g~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~a~~~~~~~~ 497 (504) T protein:vir:99 423 MLGAGPEWLKETEVGLEL--L---GLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQGAGEPPANEPPAAL 497 (504) T ss_pred HHhhccccccchHHHHhh--c---CCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcCCCCCCCCCCCccC Confidence 999996 3333443332 2 3677777665433321 221111 1222221111121122222111111 Q ss_pred -CCCCC Q lcl|Aclame:pro 523 -NGQPL 527 (527) Q Consensus 523 -~~~~~ 527 (527) -|+.+ T Consensus 498 ~~p~~~ 503 (504) T protein:vir:99 498 GRPTLV 503 (504) T ss_pred CCcccC Confidence 11111 No 55 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=100.00 E-value=4.5e-52 Score=302.09 Aligned_cols=437 Identities=12% Similarity=0.089 Sum_probs=298.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |=|.+. -.-....+.. .|.. ...|+.+|+.+.+||.|.+.-++.-....... -.++-.|-+++||++.++| T Consensus 9 ~~~~~~-~~~~~~~i~~------~i~~-~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~-~~ki~~n~~~~ivd~~~~~ 79 (453) T protein:vir:73 9 MTYSRD-EEITDKVVND------FMKK-HQEEVERYEYLGNMYKGIMEISSQKAKDSWKP-DNRLTNNFAKYIVDTFVGY 79 (453) T ss_pred eecccc-ccCCHHHHHH------HHHH-HHHHHHHHHHHHHHhccccchhcCCCCCccCc-cceeecchHHHHHHHhhhh Confidence 222211 1111112211 2223 34678999999999999865333211111111 1234467788999999999 Q ss_pred hccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCC Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~ 160 (527) | +|.+-.+++.++++++.|..|++.++++.++.++.+.+++.|.|+.++++|. .+ ++.|+.++|...||++++.. T Consensus 80 l-~g~~~~~~~~d~~~~~~l~~~~~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~-~~---~~~i~~~~p~~~~~v~dd~~ 154 (453) T protein:vir:73 80 F-NGIPIKKTHDDKSVLEAMQLFDNLNDMEDEESELAKIACVYGRAYELMYQNE-ST---ESEVIYCSPLNVFMVYDDSI 154 (453) T ss_pred h-cccCceeecCChHHHHHHHHHHHhcChhHHHHHHHHHHHhcCeEEEEEEeCC-CC---ceEEEEEcccceEEEEeCCC Confidence 9 7777778888999999999999999999999999999999999999999885 23 67888999999999998876 Q ss_pred CCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcc Q lcl|Aclame:pro 161 PGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE 240 (527) Q Consensus 161 ~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~ 240 (527) ...+.... .|...++.. +|...|.+ ..|..-. ..-++| .. T Consensus 155 ~~~~~~~i---~~~~~~~~~---------~~~~vyt~-------~~i~~~~--~~~~~~-------------------~~ 194 (453) T protein:vir:73 155 KQKPLFAV---YYGFDEEGN---------LSGTVYTL-------LETISIT--GKAGEV-------------------KF 194 (453) T ss_pred CceeEEEE---EEEEecCce---------EEEEEEeC-------CeEEEEE--ecCCce-------------------EE Confidence 55443332 222222111 11111111 1110000 000111 12 Q ss_pred cccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCccc----- Q lcl|Aclame:pro 241 EEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMV----- 315 (527) Q Consensus 241 e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~----- 315 (527) ++..|++++.||||.|+|. .+|.|+++++++|+|++|+++|+.+.++++++.|+++++|....+.+.+.. T Consensus 195 ~~~~~~~~g~vPvv~~~n~-----~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 269 (453) T protein:vir:73 195 GESTYNVYSDLPIVEYNFN-----EERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQYLVFLGAEVDEEDAKNIKDNRL 269 (453) T ss_pred ccceeccCCceeEEEecCC-----CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCCCchhhhccccccc Confidence 4556899999999999985 379999999999999999999999999999999999999986544322211 Q ss_pred --ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHH Q lcl|Aclame:pro 316 --PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCA 393 (527) Q Consensus 316 --p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~ 393 (527) .....++.....+.++++..+....+.+.+++|++.|.+.|+..|.+|.+.++.. +..||.||+..+++|..|++ T Consensus 270 ~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~---gn~Sg~Al~~~~~~l~~ka~ 346 (453) T protein:vir:73 270 INFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAANISDENF---GNSSGVALAYKLQAMSNLAL 346 (453) T ss_pred ccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccc---cCccHHHHHHHHHHHHHHHH Confidence 1122344445566677788887666889999999999999999999999888643 34699999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhc Q lcl|Aclame:pro 394 EQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIM 473 (527) Q Consensus 394 ~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g 473 (527) +++..|+.+|.|+++. +..++ ... ........++|+|.+.+|+|..+.++.+++++ |++|.+|++++| + T Consensus 347 ~~~~~~~~~l~~~~~l-i~~~~----~~~-~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--giis~et~~~~~---~ 415 (453) T protein:vir:73 347 SFQRKFQSALNRRYSL-WSSLS----TNA-SNKDAWKDIEYTFTRNEPKDIKEQAETANILK--GITSEETALSVI---S 415 (453) T ss_pred HHHHHHHHHHHHHHHH-HHHHH----hcc-CCccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCcHHHHHHhC---C Confidence 9999999999998754 33333 211 22233446789999999999999999998885 899999999876 2 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcC-cccccccccCCCCccccccc Q lcl|Aclame:pro 474 GFELTEEDFRQATEDKKTQGIAQAEAAD-PFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 474 ~~~~~e~~~~~~~e~~a~~a~~~~aa~d-~~g~~~~~d~g~~d~~~~~~ 521 (527) ..++.+++.+++++...++..... .+.. .||++-++- T Consensus 416 ----~~~d~~~E~~ri~~E~~~~~~~~~~~~~~-------~~~~~~~~~ 453 (453) T protein:vir:73 416 ----VIPDVQAEMEKIKKKKLLQLSLTRTSNLV-------RMKQMRGNL 453 (453) T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHhccCC-------cchhhhcCC Confidence 344566666666653222221111 1111 112221111 No 56 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=5.3e-51 Score=296.21 Aligned_cols=422 Identities=13% Similarity=0.080 Sum_probs=282.9 Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhhhccCccccccCcchhHHHH Q lcl|Aclame:pro 20 NFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDA 99 (527) Q Consensus 20 ~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~ 99 (527) -+ +.|-..+++... ++ .-.+=+++||++.+++|.+ -.+++++.+.++. T Consensus 1 ~l---------------------~~~~~~~~~~~~-------~~-~v~n~~~~ivd~~~~~l~~---~gf~~~d~~~~~~ 48 (434) T protein:vir:98 1 ML---------------------PKNAEQAFLDFQ-------RK-ARTNFCGLIANASVHRLLA---LGVTGPDGEPDTR 48 (434) T ss_pred CC---------------------CCCccHHHHHhh-------hh-hhccchHHHHHHHHhhhcc---CceecCCCchHHH Confidence 01 111122222211 00 0113388999999998843 2346777788888 Q ss_pred HHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCC---CccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCC Q lcl|Aclame:pro 100 IRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKD---EGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHP 176 (527) Q Consensus 100 lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~---~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~p 176 (527) +..|+++|+|+.++.++++.+.+-|.|+++|+.++... .-.++.|+.++|.+.|+++|+... +++..-.. |... T Consensus 49 ~~~i~~~N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~-~~~~ai~~--~~~~ 125 (434) T protein:vir:98 49 ASRWWQANRLDSRQKLVWRMAMAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETG-EPLVGLKV--WHND 125 (434) T ss_pred HHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCC-ceEEEEEE--EEec Confidence 98999999999999999999999999999999875431 112788999999999999987644 44433222 4433 Q ss_pred CCccceeeeeeeeeeeeeecCCccccCCccceeeeccc-ccccccccccccccccceeeeccCcccccccccccccceEe Q lcl|Aclame:pro 177 DSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELY-EPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFH 255 (527) Q Consensus 177 d~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~-~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~ 255 (527) .+.... +..|. . ....+..+.+ ..+.|. ......+.........++|+++||||+ T Consensus 126 ~~~~~~-----~~~~~---~--------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~g~vPvv~ 181 (434) T protein:vir:98 126 IDGFGY-----ARVFF---D--------DTSFPYRTRERTGARLP--------WGPDSWVYTGTADSGDVHDLGGMQLVE 181 (434) T ss_pred cCCceE-----EEEEE---e--------CcEEEEEEeeccccccc--------cccccceecccccccccCCCCccceEE Confidence 322111 11110 0 0000000000 000000 000011112223455689999999999 Q ss_pred eCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc---CCCCccc----ceecCCCeeEecC Q lcl|Aclame:pro 256 FRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR---DSRGNMV----PWTISPLGMVEHG 328 (527) Q Consensus 256 ~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~---d~~G~~~----p~~v~pg~~~el~ 328 (527) |+|.+..++ ||.|+++++++|+|++|+++|+...++++++.|.+++.|..+. ++.|+.. .+...++.||.++ T Consensus 182 f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 260 (434) T protein:vir:98 182 FARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIKGHKFAKRTDPATGMTVVDQPFVPSPSAVWASE 260 (434) T ss_pred eccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCcccccccccccchhhhhhhccccccccCC Confidence 999976545 8999999999999999999999999999999999999887653 2333322 2346688898876 Q ss_pred -CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 329 -QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFF 407 (527) Q Consensus 329 -~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~ 407 (527) ++.+|.+++. +++++|.++++.+...++.++.||..+||. + ++..||.||+..+.+|+.|+++||..|+.+|.|++ T Consensus 261 ~~~~~~~q~~~-~~~~~~~~~l~~~i~~~~~~~~~p~~~~~~-~-~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~ 337 (434) T protein:vir:98 261 GENTQFGQLDA-TDLSGFLKEHASDVRDMLTISQTPTYLYAT-D-LVNISADTIGALDILHVAKVREHIASFSEGLESVL 337 (434) T ss_pred CCCceEEEecC-cchHHHHHHHHHHHHHHhcccCCCHHHhcc-c-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 5799999994 699999999999999999999999999994 2 34469999999999999999999999999998887 Q ss_pred HHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHH Q lcl|Aclame:pro 408 YNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATE 487 (527) Q Consensus 408 ~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e 487 (527) +.+ ..+ .+. ......+.++|.+++|+|.+++++.+++|+++|+ |.++++++| +++.++++++.+ T Consensus 338 rl~-~~~----~g~----~~~~~~~~v~w~~~~~~s~~~~ada~~kl~~~g~-~~e~~~~~l------g~~~~e~~r~~~ 401 (434) T protein:vir:98 338 ALA-AAQ----AGV----PEDYTEAEVRWANPAHVTMAVKADAATKLKSIGY-PLDVIAEEL------DESPARVRRIVA 401 (434) T ss_pred HHH-HHh----cCC----ChhheeeeEEecCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHhC------CCCHHHHHHHHH Confidence 533 222 222 2234457899999999999999999999999985 787766554 356667766655 Q ss_pred HHHHHHHHHHHhcCcccccccccCCCCcccccc Q lcl|Aclame:pro 488 DKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQ 520 (527) Q Consensus 488 ~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~ 520 (527) +..+++...++.+...+...+++.+..+.+.|+ T Consensus 402 e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 402 GAASQALLAASLLPAPGAPSAGNVPDSGGAVDG 434 (434) T ss_pred HHHHHHHHHHhhhccCCCCCCCCCCcccCCCCC Confidence 544443322222222222222222222222333 No 57 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=100.00 E-value=6.5e-51 Score=295.74 Aligned_cols=434 Identities=13% Similarity=0.112 Sum_probs=292.2 Q ss_pred CChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEee---ecCCcccccc---cccCCchhHHHHh Q lcl|Aclame:pro 3 QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI---LRGGDEGDQR---PIYVPNGEKLIEA 76 (527) Q Consensus 3 ~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i---~~g~d~~~~~---~~~~p~~~k~v~~ 76 (527) ++. ..- ...-..+..|+.+|+.+.+||.|++.-++.- .+........ ++-.+-+++||++ T Consensus 1 l~~------------~~i--~~~i~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~ 66 (451) T protein:vir:10 1 MEL------------EKI--RAIISADAARRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDE 66 (451) T ss_pred CCH------------HHH--HHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHh Confidence 111 111 1112345568899999999999986544321 1111110111 3446779999999 Q ss_pred hhhhhccCccccccCcc-hhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCC----CCccceEEEEEccce Q lcl|Aclame:pro 77 KMRFLGQGLKWEFSKKD-AKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEK----DEGSRLSLHEVDPST 151 (527) Q Consensus 77 ~~~~Lg~~~~~~i~~~~-~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k----~~~~r~~i~~vdP~~ 151 (527) .++|| +|.+-.+++++ ++.++.|+.|. +++++.++.+++|.+.+.|.|+.++++|..- ....++.++.++|.+ T Consensus 67 ~~~yl-~G~p~~~~~~~~~~~~~~~~~~~-~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~ 144 (451) T protein:vir:10 67 KASYM-FTYPVLFDIDNNKELNEKVTDVL-GNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEE 144 (451) T ss_pred hhhhe-ecccceeecCCcHHHHHHHHHHh-ccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccc Confidence 99999 77676666655 45677787777 4889999999999999999999999998431 112378889999999 Q ss_pred EEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccc Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDD 231 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~ 231 (527) .||++++...+++... +..|...++.....+. ..++|...+.++. ..+|+..+ T Consensus 145 ~~~vydd~~~~~~~~~--ir~~~~~~~~~~~~~~-~~~~~~e~yt~~~-----------~~~~~~~~------------- 197 (451) T protein:vir:10 145 IIPIYRNGIERELEAV--IRYYIQLEDVKGQIQK-QAYTYVEFWTDKI-----------LDKYKFFG------------- 197 (451) T ss_pred eEEEEcCCCCCceEEE--EEEEEeeecccccccc-eEEEEEEEEeCCe-----------EEEEEecc------------- Confidence 9999988777766544 3234433332211110 0111111111111 01111100 Q ss_pred eeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC Q lcl|Aclame:pro 232 IKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR 311 (527) Q Consensus 232 ~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~ 311 (527) .........+...|++++.||||+|+|.. .|.|+++++++|+|++|+++|+.+.+++.+++|++++.|....+.. T Consensus 198 ~~~~~~~~~~~~~~~~~g~vPvv~~~nn~-----~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~ 272 (451) T protein:vir:10 198 VSCCGSQIEHITVQHRFNSVPFVEFSNNI-----KKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTS 272 (451) T ss_pred cCccccccccccccCCCCeeeEEEeccCC-----CCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccch Confidence 00011122356678999999999999853 4889999999999999999999999999999999999987643321 Q ss_pred CcccceecCCCeeEecC-----CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 312 GNMVPWTISPLGMVEHG-----QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 312 G~~~p~~v~pg~~~el~-----~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ... .......++.+. .++.+..|....+.+++++++++|.+.||..|++|.+..+.. +..||.||+..|+ T Consensus 273 ~~~--~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~---gn~Sg~Alk~~~~ 347 (451) T protein:vir:10 273 EFL--KELKRYKTIKTETDSEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQQDTENF---GNASGVALKFFYR 347 (451) T ss_pred hhH--HHHhhCCeEEecCcCCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCccccccccc---ccccHHHHHHHHH Confidence 111 123334444443 457788877666899999999999999999999998766532 3469999999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) +|.+|+.++|..|+.+|.|+++- +..++ +. .....+.|+|.+.+|+|..++++.+++| +|++|.+|++ T Consensus 348 ~l~~k~~~k~~~f~~~l~~~~~l-i~~~~----~~-----~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~ 415 (451) T protein:vir:10 348 KLELKSGLLETEFRTSFDKLIKA-ILYFL----GV-----TDYKKIQQTYTRNMMSNDLEDADIATKS--VGIIPTKIIL 415 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHh----CC-----CCccceeEEecCCCCCCHHHHHHHHHHH--hccCchHHHH Confidence 99999999999999999888744 44443 21 2234578899999999999999999888 4999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-HhcCccccccccc Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQA-EAADPFGAQMAAE 510 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~-aa~d~~g~~~~~d 510 (527) ++| |..++.+++.++++.+..++. ...+.++. .+| T Consensus 416 ~~~-------p~v~d~~~e~~~~~ee~~~~~~~~~~~~~~--~~~ 451 (451) T protein:vir:10 416 RHH-------PWVDDVEEAEKLYLEEKKIQASKVSDDYNN--FTE 451 (451) T ss_pred HhC-------CCCCCHHHHHHHHHHHHHHHHHHHHhhcCC--CCC Confidence 976 334455555556654333222 22333221 222 No 58 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=1.1e-50 Score=294.49 Aligned_cols=442 Identities=13% Similarity=0.118 Sum_probs=296.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc-cc-ccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG-DQ-RPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~-~~-~~~~~p~~~k~v~~~~ 78 (527) =|-++.+.- +.+-.....|+.+|+.+.+||.|++.-...-.+-..+. .. +..-.+-+++||++.+ T Consensus 2 ~~~t~~~~~-------------~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~ 68 (456) T protein:vir:79 2 TASTPAEWL-------------PVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVA 68 (456) T ss_pred CCCCHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhccCChhhcCcccChhhchhhhhhhcchHHHHHHHHH Confidence 111221110 00001234577889999999999875321111001111 11 1111345899999999 Q ss_pred hhhccCccccccC-cchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEec Q lcl|Aclame:pro 79 RFLGQGLKWEFSK-KDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYED 157 (527) Q Consensus 79 ~~Lg~~~~~~i~~-~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d 157 (527) +|| +|.+..+.. .+++.++.+..|+++|+|+.++.++.+.+.+.|.|+.+++-| +.+ .+.|+.++|.+.|+++| T Consensus 69 ~~l-~~~g~~~~~~~d~~~~~~~~~~~~~n~~d~~~~~~~~~a~~~G~a~~~~~~~-edg---~~~i~~~~p~~~~~i~d 143 (456) T protein:vir:79 69 DRI-IPNGITVGGSADSDLALRARRIWRDNRMDSVCKQWVKYGLDFGESYLTCWRR-DDG---TATITADSPETMVVSVD 143 (456) T ss_pred hhh-ccCCeecCCCCCccHHHHHHHHHHhcChhHHHHHHHHHHhhcCeeEEEEeeC-CCC---ceEEEEeccceeEEEEc Confidence 999 444554433 345667778888888999999999999999999986555544 344 56788999999999999 Q ss_pred CCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeec- Q lcl|Aclame:pro 158 PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLS- 236 (527) Q Consensus 158 ~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~- 236 (527) +.....+...-.. |.++++... |...+.+++. ..+..+.|.. |+... .. ..... T Consensus 144 ~~~~~~~~~~~~~--~~~~d~~~~---------~~~~~~~~~~------~~~~~~~~~~--~~~~~----~~--~~~~~~ 198 (456) T protein:vir:79 144 PLQPWRIRSAMRW--WRDLDAESD---------FAIVWSGDGW------QKFARPCFVQ--SSSRR----RL--VTRISD 198 (456) T ss_pred CCCCCceEEEEEE--EEecCCcee---------EEEEEcCCce------EEEEEEEEee--ccccc----ee--eeccCC Confidence 8766555554222 444433211 1111111110 0000000000 11000 00 00000 Q ss_pred cCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC----cCCCC Q lcl|Aclame:pro 237 TLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP----RDSRG 312 (527) Q Consensus 237 ~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~----~d~~G 312 (527) ....+...++++++||||.|.| .+|.|+++++++|+|++|+++|+...++++++.|+.++.|... .|.+| T Consensus 199 ~~~~~~~~~~~~~~~pvv~~~N------~~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g 272 (456) T protein:vir:79 199 SWVPVGDAVVTGSPPPVVVYQN------PDGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENG 272 (456) T ss_pred ceeecccccCCCCceeEEEecC------CCCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccc Confidence 0011334578899999999987 4689999999999999999999999999999999988888542 35677 Q ss_pred ccc----ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccH Q lcl|Aclame:pro 313 NMV----PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAI 388 (527) Q Consensus 313 ~~~----p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PL 388 (527) +.. .+...+|.+|.++++.++++++ .++++++.++++.+...|+..++||...||.. ++..||.||+..+.+| T Consensus 273 ~~i~~~~~~~~~~~~~~~~~~~~~~~q~~-~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~--~~N~Sg~Al~~~~~~l 349 (456) T protein:vir:79 273 NAIDYASIFEAAPGALWELPPGVDIWESQ-TNDFTPMLSAIKEHIRQLSSATKTPLPMLMPD--SANQSAEGAHNIEKGF 349 (456) T ss_pred cccchhhhhhhhccccccCCCCcceeeec-ccChHHHHHHHHHHHHHHHhhcCCChhHhccc--ccCcHHHHHHHHHHHH Confidence 653 4667899999999999999998 46999999999999999999999999999932 3456999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHH Q lcl|Aclame:pro 389 LSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEE 468 (527) Q Consensus 389 lakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~ 468 (527) ..|+++||..|+.+|.|+++.+ . ++.+ . .....++|+|.+++|.|..+.++..++|+++|++|.+++++. T Consensus 350 ~~k~~~~~~~f~~~l~~~~~l~-~----~~~g---~--~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~ 419 (456) T protein:vir:79 350 LFKCEDRLSIAKIGLEAILVKA-L----QIEG---E--SVEDTVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNI 419 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-H----HhcC---C--CccccceEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHhc Confidence 9999999999999998887543 2 2222 1 223457889999999999999999999999999999998876 Q ss_pred HHHhcCCCCchHHHHH-HHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 469 LSKIMGFELTEEDFRQ-ATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 469 L~~~g~~~~~e~~~~~-~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) | +++.+++++ +.++++.+ ..+-++++ ...|.||++- T Consensus 420 l------g~~~~~i~~~e~~r~~~e--~~~~~~~~------~~~~~~~~~~ 456 (456) T protein:vir:79 420 L------NYNADQIKQDDLDRAREQ--ITLFAGNP------VQRPQEDGSR 456 (456) T ss_pred C------CCCHHHHHHHHHHHHHHH--HHHHhhhH------hhcCCCCCCC Confidence 5 355555433 44444432 11111122 2235566555 No 59 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=100.00 E-value=3.4e-50 Score=291.78 Aligned_cols=407 Identities=12% Similarity=0.074 Sum_probs=281.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhh--eEeeecCCccc-ccccccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSD--YQVILRGGDEG-DQRPIYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~--~~~i~~g~d~~-~~~~~~~p~~~k~v~~~ 77 (527) |.+.--+ .++ ..-.+|..+|+.+.+||.|.+.- +...+ .++. .....-.+=++|+|++. T Consensus 1 m~~~~i~-----~L~-----------~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~--p~~~~~~~~~v~nw~~~~Vd~~ 62 (422) T protein:vir:97 1 MNYMGMG-----YLR-----------RKLALFKTGVDKRYRYYAMDDRDDTRSIVM--PNNVREMYRSVLEWTAKGVDSL 62 (422) T ss_pred CChHHHH-----HHH-----------HHHHHHHHHHHHHHHHHhcCCChhhcCccc--cHHHHHHHHhhcchhHHHHHHH Confidence 3322111 111 12235677899999999998532 11111 1111 11112235578999999 Q ss_pred hhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEec Q lcl|Aclame:pro 78 MRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYED 157 (527) Q Consensus 78 ~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d 157 (527) +..|.+ -.++.++++ +..||++|+|+.+..++++.|++-|.++..|+.|++.+ +|.|+.++|.+.|.++| T Consensus 63 a~rl~~---~Gf~~~d~~----l~~~w~~N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~---~p~i~~~sp~~~~~i~D 132 (422) T protein:vir:97 63 ADRIIF---REFTNDDFN----AWEIFKANNPDIFFDTAIQSALIASCCFVYIMPGAEDG---LPKMQVIEASKATGILD 132 (422) T ss_pred Hhcccc---ceeeCCchh----HHHHHHhcChHHHHHHHHHHHHHhcceeEEEeeCCCCC---eeEEEEechhhEEEEEe Confidence 886643 123566654 44566789999999999999999999999998776444 67889999999999998 Q ss_pred CCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeecc Q lcl|Aclame:pro 158 PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLST 237 (527) Q Consensus 158 ~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~ 237 (527) |... ++....-. |...++ +... ...| ..+ ..+.+.. . T Consensus 133 ~~~~-~~~~a~~~--~~~~~~-~~~~----~~~~----~~~------~~~~~~~-------------------------~ 169 (422) T protein:vir:97 133 PTTF-LLTEGYAI--LESDSN-GNPT----LEAY----FTD------KDIWYYP-------------------------K 169 (422) T ss_pred CCCC-cceeeEEE--EEecCC-CcEE----EEEE----EcC------ceEEEEc-------------------------C Confidence 8643 44333222 322222 1111 1111 000 1110000 1 Q ss_pred CcccccccccccccceEeeCCCCCCCCccCCccc-cchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcc-c Q lcl|Aclame:pro 238 LTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGL-AGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNM-V 315 (527) Q Consensus 238 ~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~L-edl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~-~ 315 (527) +......|||+++||||+|+|.+...+.||+|+| +.+++|+|++|++++++..+++|++.|..++.|+. .+|+. . T Consensus 170 ~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d---~d~~~~~ 246 (422) T protein:vir:97 170 KGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYVLGMD---PDAKPME 246 (422) T ss_pred CCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccC---cccccCc Confidence 1111234899999999999999999999999999 56999999999999999999999999999999974 34443 3 Q ss_pred ceecCCCeeEecCCC-----CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHH Q lcl|Aclame:pro 316 PWTISPLGMVEHGQN-----NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILS 390 (527) Q Consensus 316 p~~v~pg~~~el~~~-----~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLla 390 (527) .|+...+.||.++++ .+|++++. +++.+|.++++.+...++.+++||..+||..-. +-.||.||+..+.+|.. T Consensus 247 ~~~~~~~~i~~~~~de~~~~~~v~q~~~-~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~-NpsSa~Ai~a~~~~L~~ 324 (422) T protein:vir:97 247 KWRATVSTLLEISKDEDGDKPTVGQFTT-ASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSD-NPSSVESIKAAHENLRA 324 (422) T ss_pred hhhhhhhhhhccCCCCCCCcceeeecCC-CChhHHHHHHHHHHHHHhcccCCCHHHhccccC-chhHHHHHHHHHHHHHH Confidence 577888999999765 47899985 699999999999999999999999999995431 22489999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC---HHHHHHHHHHHHhc--CCccHHHH Q lcl|Aclame:pro 391 SCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN---NEKRFAQLLELWEA--GLIPAKKL 465 (527) Q Consensus 391 kv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D---~~~~i~~~v~l~~a--Glls~~ta 465 (527) |+++||..|+.+|+|+++.. ..+... + ....+....+++.|.+..|.| .++.+++++||+++ |+.+.+++ T Consensus 325 ka~~k~~~fg~~l~~~~rla-~~~~~~---~-~~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~ 399 (422) T protein:vir:97 325 AGRKAQRSFSSGFLNVAYIA-VCLRDE---F-PYLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVI 399 (422) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhcC---C-cccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHH Confidence 99999999999999987543 222211 1 111122334678999888888 78889999999999 78999999 Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 466 TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADP 502 (527) Q Consensus 466 ~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~ 502 (527) +++| |+..+.+++.++.+..+ |- T Consensus 400 ~~~l----g~~~~~~~~~~~~~~~~----------d~ 422 (422) T protein:vir:97 400 RDLT----GVKGADKPIPAITEVTT----------DG 422 (422) T ss_pred HHHc----CCCchhHHHHHHHhhhc----------cC Confidence 8887 44333444333322211 11 No 60 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=100.00 E-value=3.6e-48 Score=280.72 Aligned_cols=467 Identities=10% Similarity=0.097 Sum_probs=304.5 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEee--ecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI--LRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i--~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |.+. ...+.++...+- +. ...++.+++.+..||.|++..+... ..+++....+.+-++-++.|+++.+ T Consensus 16 ~~~~----~~~~~~~~~~~~-----~~-~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i~~~~a 85 (496) T protein:vir:38 16 MGLL----KALKDVKDHKKV-----NA-NDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMS 85 (496) T ss_pred hccc----hhhHHHHhcCCC-----cC-CHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchHHHHHHHHh Confidence 4432 123344433222 21 2355677777889999987654321 1133333445566788999999999 Q ss_pred hhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecC Q lcl|Aclame:pro 79 RFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDP 158 (527) Q Consensus 79 ~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~ 158 (527) +|| +|.+-.++++++.+++.|..|++.+++..++.++...|.++|+++++++||.+ .+|.|+.++|.++||++++ T Consensus 86 ~~l-~~~p~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~----~~~~i~~v~~~~~~P~~~~ 160 (496) T protein:vir:38 86 KLL-FNEKVKINIDDKAAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGN----KNVKVSFATADCMYPLSND 160 (496) T ss_pred hhh-hCCcceEeeCChHHHHHHHHHHhccCHHHHHHHHHHHHhhhCcEEEEEEEcCC----CcEEEEEEcccceEEEEec Confidence 999 88888899999999999999999888999999999999999999999999964 2688899999999998865 Q ss_pred CCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccC Q lcl|Aclame:pro 159 RYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTL 238 (527) Q Consensus 159 d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~ 238 (527) . ++++++.|+..|...+ ..-..+ .| .+..++ .+.|.+......-+ +.-+.++....+ -.+ T Consensus 161 ~--~~~~~~~f~~~~~~~~--~~y~~l----e~--h~~~~~----~~~I~~~~y~~~~~---~~~g~~v~~~~~---~~~ 220 (496) T protein:vir:38 161 S--ENVDECVIANSFHKNN--KYYTLL----EW--NEWQGD----VYTVTTELYQSDDP---NELGTKVSLTLL---FDD 220 (496) T ss_pred C--CcEEEEEEEEEEEeCC--eEEEEE----EE--EEEeCc----eEEEEEEEEecCCc---cccCcccccccc---ccc Confidence 4 5788888887665321 111111 11 011111 12222221100000 000000000000 000 Q ss_pred cccccccccccccceEeeCC----CCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC--cCCCC Q lcl|Aclame:pro 239 TEEEPLPEQITTLPVFHFRG----HPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP--RDSRG 312 (527) Q Consensus 239 ~~e~~l~~pi~~iPVV~~pN----~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~--~d~~G 312 (527) ..+...-..++.+|+++|+| .....+++|.|+++++++++|+||.++|+.+...+.+-..+++...+-. .+..| T Consensus 221 ~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~g 300 (496) T protein:vir:38 221 IEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDG 300 (496) T ss_pred cccceeecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhccCCCCC Confidence 01111123456778888754 4567889999999999999999999999999998875444566433221 12333 Q ss_pred cccceecCC------CeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 313 NMVPWTISP------LGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 313 ~~~p~~v~p------g~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ...+..-.+ +.+...+....+..++.....+.+.+.++.++++|...+++|..+||. +.++..|+.+++.+++ T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~-~~~g~~tAtei~~~~~ 379 (496) T protein:vir:38 301 STTQYFDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTF-DENGLKTATEVVSEKS 379 (496) T ss_pred ccccCCCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCC-CccccchHHHHHHHHH Confidence 332211111 111122222346667665567899999999999999999999999994 3456668899999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) +|.+++..|+..|...+.|+++-++. +.-.+ .+..+.......++|+|++.+|.|.+++++++++++++|++|.+|++ T Consensus 380 ~l~~~~~~~~~~~~~~l~~l~~~il~-~~~~~-~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l 457 (496) T protein:vir:38 380 ETYQTKNSHSQLIEQGIKEMIVSILE-VGKFI-EAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIAL 457 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHH Confidence 99999999999999999998875532 11111 12222223445688999999999999999999999999999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d 515 (527) .++ .+.++++++++++++++. .+..-|. ..+.+-+|.+| T Consensus 458 ~~~-----~~~~d~ea~~el~ri~~E----~~~~~~~-~d~~~~~~~~e 496 (496) T protein:vir:38 458 QRA-----WNITEAEADEWAEMLAKE----KQAEMPN-NDMNGIFGEEE 496 (496) T ss_pred Hhc-----CCCChHHHHHHHHHHHHh----hhccCcc-ccccCCCCCCC Confidence 865 356888888888888752 1111121 11112122222 No 61 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=100.00 E-value=2.7e-48 Score=281.38 Aligned_cols=479 Identities=12% Similarity=0.038 Sum_probs=293.1 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeee--cCCccccc-------ccccCCchh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVIL--RGGDEGDQ-------RPIYVPNGE 71 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~--~g~d~~~~-------~~~~~p~~~ 71 (527) =|.-.+.=.....||.-. ++...-.+|+..|+.+.+||.|++.-++.=. .+++.... .++-.+-++ T Consensus 3 ~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k 77 (537) T protein:vir:78 3 SPLLNKPIDQLGGLLNTE-----ITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFT 77 (537) T ss_pred cccccccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccccccchHH Confidence 111111123333343322 1122335788999999999999975432211 12111111 135566789 Q ss_pred HHHHhhhhhhccCccccccCcc---hhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 72 KLIEAKMRFLGQGLKWEFSKKD---AKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 72 k~v~~~~~~Lg~~~~~~i~~~~---~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) .||++.++|| +|.+-.++..+ .++++.|..|++ ++++.++.++.+.+.+.|+|+.++++|.. + ++.++.++ T Consensus 78 ~Ivd~~~~yl-~G~Pv~~~~~d~~~~e~~~~l~~~~~-~~~~~~~~el~~~~s~~G~ay~~~y~de~-~---~~~~~~i~ 151 (537) T protein:vir:78 78 ELVDQLAQYL-LSNGVEVKVKDEDNTQLDEILQEYFD-EDFQATIDTLVTNASKKGFEGIFARTTSE-G---KLKFQTVD 151 (537) T ss_pred HHHHHHhhhh-cccCceeecCcchhHHHHHHHHHHhh-ccHHHHHHHHHHHHhhcCeeEEEeeecCC-C---ceEEEEEc Confidence 9999999999 66666665544 456778888885 78899999999999999999989988853 3 78889999 Q ss_pred cceEEEEecCCCCC-ceEEEEEEEeeeCCCCc-cceeeeee----e-eeeeeeecCCccccCC----ccceee-eccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPG-QVLGVYLVDEYPHPDSE-KKNEKCAR----V-QKYMKTLDDDGKPVPG----GAIKYT-EELYEP 216 (527) Q Consensus 149 P~~~fp~~d~d~~~-~v~~vh~a~~~~~pd~~-~~~~k~~r----r-~~~~~~~~~~g~p~~~----g~i~~~-~~~~~~ 216 (527) |.+.||++|+...- .+.++|....+...+.. ....++.. . ..|. ...+..... ..+... ..+... T Consensus 152 p~~~~pv~d~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~---~~~~~~~~~~~~~~~~~~~~i~~~~~ 228 (537) T protein:vir:78 152 GLTLIPVFDDYGVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYI---QDDEGVSTTYKLDEAYNPNPAPHVLA 228 (537) T ss_pred cceeEEEEcCCCCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEE---ecCCcccccccccccccccccceeee Confidence 99999999753221 24444433222222111 11111110 1 1111 010000000 000000 000000 Q ss_pred ccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhC Q lcl|Aclame:pro 217 GKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGG 296 (527) Q Consensus 217 g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g 296 (527) ..+. ...-......+...|++++.||||.|+|. ..|.|+++++++|+|++|.++|+.+..++.+. T Consensus 229 --~~~~--------~~~~~~~~~~~~~~~~~~g~iPvv~f~nn-----~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~ 293 (537) T protein:vir:78 229 --IEES--------TDADFEDTDGYQVLGRSYSKFPFQLLYNN-----KDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFS 293 (537) T ss_pred --cccc--------ccccccccccccccccCCcceeEEEeccC-----ccCCCchhhhHHHHHHHHHHHHhhhhHHHHhc Confidence 0000 00011123345778999999999999995 36899999999999999999999999999999 Q ss_pred CceEEeccCCCcCCCCcccceecCCCeeEec-CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 297 LGFYATDSAPPRDSRGNMVPWTISPLGMVEH-GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 297 ~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el-~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) +|++++.|....+ .|+.. -.+.--.++++ ++++.+..|..-.+.+++++|+++|.+.||..|.+|..... . ++. T Consensus 294 ~~ilvi~g~~~~~-~~~~~-~~l~~~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~~~~~~~~--~-~gn 368 (537) T protein:vir:78 294 EAIYVVKGFSGDS-TDKLR-QNIKAKKMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRSGMGFNSTAV--G-DGN 368 (537) T ss_pred CceeeeecCCCcc-chhHH-HHHhhcCceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHhcCCCCCccc--c-ccC Confidence 9999998865322 22211 11222234455 46788988887779999999999999999999999986542 3 456 Q ss_pred ccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 376 ESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 376 ~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) .||.||+..|++|..|+++|+..|..++.|+++- |..++ .+..........+.|+|.+.+|.|..++++.+++|+ T Consensus 369 ~SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~-i~~~~----~~~~~~~~d~~~i~i~f~~~~P~n~~e~a~~~~~l~ 443 (537) T protein:vir:78 369 VTNVVIKSRYTLLAMKARKMETSLRKVLRWCADM-VVSDI----ALRGLGEYDSNDICFEIEPHVLANELDIATTRKTEA 443 (537) T ss_pred CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHH----hhcCCcccccceeeEEeccCCCCCHHHHHHHHHHHH Confidence 7999999999999999999999999999888744 44443 233333334557889999999999999999999999 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH------------HHHHHHhcC------cccccccccCCCCccc Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQ------------GIAQAEAAD------PFGAQMAAEQGIPDEE 517 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~------------a~~~~aa~d------~~g~~~~~d~g~~d~~ 517 (527) ++|++|.+|++++| ++ .++.+.+ +++..+ +..++...+ +.+ .++.+++.|+-. T Consensus 444 ~~giiS~eT~l~~~---p~----vdd~e~e-k~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 514 (537) T protein:vir:78 444 ETEALKIGNIMTVA---PR----IGDDETL-KLIAEELDLDYNELKDALAEQDAQSLDVSPDVQAML-DGLPVNANQPPV 514 (537) T ss_pred hcCcchHHHHHHhC---CC----CCCHHHH-HHHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhc-CCCCCCCCCCCC Confidence 99999999999976 22 2222211 111100 000000011 111 111111111111 Q ss_pred ccccC----CCCCC Q lcl|Aclame:pro 518 DDQAL----NGQPL 527 (527) Q Consensus 518 ~~~~~----~~~~~ 527 (527) +.+.. |..|- T Consensus 515 d~~~~~~~~~~~~~ 528 (537) T protein:vir:78 515 DPNQPVADPNVVPP 528 (537) T ss_pred CccCCCCCCCCCCC Confidence 11111 11111 No 62 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=100.00 E-value=4.3e-49 Score=285.72 Aligned_cols=396 Identities=13% Similarity=0.109 Sum_probs=274.2 Q ss_pred ChHHHHHHHHHHHHHHHhcCChhh--eEeeecCCcccccccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHH Q lcl|Aclame:pro 26 TDFDKARLASYRLYEDMYLTNTSD--YQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVL 103 (527) Q Consensus 26 ~~~d~~Rl~aY~~~~~~y~~~~~~--~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w 103 (527) -+-.+.| |+.+.+||.|.+.- +.+-++-.- +...+.-.+-++|+|++.+..|.+ . .++.++++ |..| T Consensus 1 l~~~~~r---~~~~~~yY~g~~~~~~~~~~~p~~~-~~~~~~v~nw~~~~Vds~a~rl~~--~-Gf~~~d~~----l~~i 69 (410) T protein:vir:95 1 MNLYQSR---VNLRYKHYAMQHYEAPTGITIPAHI-RAKYQAVLGWAAKGVDSLADRLIF--R-AFANDDFN----VTEI 69 (410) T ss_pred CCcchhh---HHHHHHHhcCCCCccccchhccHHH-HhHHHhhcchhHHHHHHhHhhhcc--c-cccCCCch----HHHH Confidence 2233444 66778999998522 111111000 001112235688999999998854 2 23455544 5567 Q ss_pred HHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCcccee Q lcl|Aclame:pro 104 FDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNE 183 (527) Q Consensus 104 ~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~ 183 (527) +++|+|+.++.++++.|++-|.++..|+=+ +.+ ++.|+.++|...|.++||.. ++|....-. |...++.. T Consensus 70 ~~~N~ld~~~~~~~~~al~~G~sf~~v~~~-~d~---~~~i~~~sP~~~~~i~Dp~~-~~~~~al~~--~~~~~~~~--- 139 (410) T protein:vir:95 70 FDRNNPDIFFDSAILSALIGSCSFVYISKG-EDD---EVRLQVIESSNATGVIDPIT-GLLVEGYAV--LARDDYNR--- 139 (410) T ss_pred HhhcChHHHHHHHHHHHHHhCceeEEEecC-CCC---ceEEEEEcccceEEEEeCCC-CceEEEEEE--EEecCCCe--- Confidence 788999999999999999999987666533 233 67889999999999999854 455543212 22222111 Q ss_pred eeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCC Q lcl|Aclame:pro 184 KCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMN 263 (527) Q Consensus 184 k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~ 263 (527) . ++...+.+ +.+. + + ..+......+||+++||||+|+|.+... T Consensus 140 -~----~~~~~~~~-------~~~~-~-----~-------------------~~~~~~~~~~~~~g~vPvV~f~n~~~l~ 182 (410) T protein:vir:95 140 -P----TLEAYFEP-------NATH-F-----I-------------------PKDGEPYSVTNETGIPLLVPVIHRPDAV 182 (410) T ss_pred -E----EEEEEEeC-------CcEE-E-----E-------------------eeCCccccccCCCCCcceEEecccccCC Confidence 0 11111111 0000 0 0 0001112248999999999999998889 Q ss_pred CccCCcccc-chHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCccc-ceecCCCeeEecCCC-----CceEEe Q lcl|Aclame:pro 264 AMFGRSGLA-GLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMV-PWTISPLGMVEHGQN-----NKIYRV 336 (527) Q Consensus 264 ~~wG~S~Le-dl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~-p~~v~pg~~~el~~~-----~k~~~l 336 (527) ++||+|+|. .+++|+|++|++++++..+++|++.|..++.|+. .+|+.. .|+..++.||.++++ .+|+++ T Consensus 183 ~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d---~d~~~~~~~~~~~~~i~~~~~~~~~~~~~v~q~ 259 (410) T protein:vir:95 183 RPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLD---PDAEPMEKWKATVSSLLTISSSDKGVKPSVGQF 259 (410) T ss_pred ccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeeccC---CCCCcCchhhhhhhhheeccCCCCCCcceEEec Confidence 999999995 6999999999999999999999999999999974 344433 478889999999865 589999 Q ss_pred ccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 337 NGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLP 416 (527) Q Consensus 337 d~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~ 416 (527) +. +++.+|.+.++.+...++.+|+||..+||..- .+..||.||+..+.+|..|+++||..|+.+|+|+++. +..+.. T Consensus 260 ~~-~~l~~~~~~l~~l~~~~a~~s~lP~~~lg~~~-~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rl-a~~i~~ 336 (410) T protein:vir:95 260 TT-ASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVS-DNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYV-AACLRD 336 (410) T ss_pred CC-CChHHHHHHHHHHHHHHhhhcCCCHHHhcccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc Confidence 85 79999999999999999999999999999432 1224899999999999999999999999999998853 333321 Q ss_pred hhhhhcccccccceeEEEEeC---CCCCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHH Q lcl|Aclame:pro 417 AYEGVGIDDADKKLTVTITFR---DPKPVNNEKRFAQLLELWEA--GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKT 491 (527) Q Consensus 417 ~~e~v~~~~~~~~~~v~v~w~---d~lP~D~~~~i~~~v~l~~a--Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~ 491 (527) . + .........++|.|. ++.-++.++.+++++||+++ |+++.++++++| +++.+++.++. T Consensus 337 ~---~-~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~l------g~~~~~~~~~~----- 401 (410) T protein:vir:95 337 E---F-RYTRSQFVRTAVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLT------GIAGDMSAKPV----- 401 (410) T ss_pred C---C-CCcccccceeeEEeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhc------CCChHHHHHHH----- Confidence 1 1 111223345778898 66666889999999999999 789999998877 46655443321 Q ss_pred HHHHHHHhcC Q lcl|Aclame:pro 492 QGIAQAEAAD 501 (527) Q Consensus 492 ~a~~~~aa~d 501 (527) .+.+.+-+- T Consensus 402 -~~e~~~~g~ 410 (410) T protein:vir:95 402 -VSEGGSNGE 410 (410) T ss_pred -HHHHHhCCC Confidence 111111111 No 63 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=100.00 E-value=9.3e-49 Score=283.92 Aligned_cols=395 Identities=12% Similarity=0.093 Sum_probs=274.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhh--eEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSD--YQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~--~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |-+ +. . +.+-..-.+|..+|+++.+||.|.+.- +.+-+. ..-+...+.-.+=++|+|++.+ T Consensus 1 ~~~--~~----i----------~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p-~~~~~~~~~v~nw~~~iVds~a 63 (409) T protein:vir:94 1 MTE--KG----I----------GYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITIP-QALSQQYRSILGWCAKGVDSLA 63 (409) T ss_pred CCH--HH----H----------HHHHHHHHHHhHHHHHHHHHhcccCchhhcChhhh-HHHHHHHhhhcchhHHHHHHhH Confidence 111 00 0 111112234677899999999997532 111110 0000111223456889999999 Q ss_pred hhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecC Q lcl|Aclame:pro 79 RFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDP 158 (527) Q Consensus 79 ~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~ 158 (527) ..|.+ . .+++++++ |..|+++|+|+.++.++++.|++-|.++..|+-+. .+ +|.|+.++|...|-++|| T Consensus 64 ~rl~~--~-Gf~~~d~~----l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~-dg---~~~i~~~sp~~~~~i~D~ 132 (409) T protein:vir:94 64 DRLVF--R-EFENDDFT----VNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGE-ND---AVRLQVIEAVNATGIIDP 132 (409) T ss_pred hhccc--C-cccCCchH----HHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCC-CC---ceEEEEeccceEEEEEec Confidence 98754 2 23455554 55677889999999999999999999886676442 22 688899999999999998 Q ss_pred CCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccC Q lcl|Aclame:pro 159 RYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTL 238 (527) Q Consensus 159 d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~ 238 (527) .. ++|.+.+-. |...++. ..+. -..| .+ +.+... + . .+ T Consensus 133 ~~-~~~~~a~~~--~~~d~~~---~~~~-~~~~----~~-------~~~~~~---~-----~----------------~~ 170 (409) T protein:vir:94 133 IT-GLLTEGYAV--LERDENN---NVVL-EAHF----LP-------DRTDYY---Y-----R----------------DS 170 (409) T ss_pred CC-CceeeeEEE--EEecCCC---ceEE-EEEE----ec-------CcEEEE---E-----e----------------cC Confidence 54 356654323 2221111 1111 0011 11 111000 0 0 01 Q ss_pred cccccccccccccceEeeCCCCCCCCccCCcccc-chHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCccc-c Q lcl|Aclame:pro 239 TEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLA-GLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMV-P 316 (527) Q Consensus 239 ~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Le-dl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~-p 316 (527) ......|||+++||||+|+|.+...++||+|+|+ .+++|+|++|++++++..+++|++.|..++.|+. .+|+.. . T Consensus 171 ~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d---~d~~~~~~ 247 (409) T protein:vir:94 171 RNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLS---DDAEPMET 247 (409) T ss_pred ceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecC---CCCcccch Confidence 1112248999999999999998889999999995 6999999999999999999999999999999974 344433 5 Q ss_pred eecCCCeeEecCCC-----CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHH Q lcl|Aclame:pro 317 WTISPLGMVEHGQN-----NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSS 391 (527) Q Consensus 317 ~~v~pg~~~el~~~-----~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlak 391 (527) |+..++.||.++++ .+|++++. +++.+|.+.++.+..+++.+++||..+||..-. +..||.||+..+.+|..| T Consensus 248 ~~~~~~~i~~~~~d~dg~~~~v~q~~~-~~l~~~~~~l~~~~~~~a~~t~lP~~~lg~~~~-NpsSa~Al~a~~~~L~~~ 325 (409) T protein:vir:94 248 WKATVSSMLQFTKDEDGDKPTLGQFTQ-PSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSD-NPSSVEAIKASHENLRLA 325 (409) T ss_pred hhhhHHHhhcCCCCCCCCCceEEecCC-CChhHHHHHHHHHHHHHhhhcCCCHHHhccccC-chhHHHHHHHHHHHHHHH Confidence 78889999998743 58889984 699999999999999999999999999995431 334899999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC---HHHHHHHHHHHHhcC--CccHHHHH Q lcl|Aclame:pro 392 CAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN---NEKRFAQLLELWEAG--LIPAKKLT 466 (527) Q Consensus 392 v~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D---~~~~i~~~v~l~~aG--lls~~ta~ 466 (527) +++||..|+.+|+|++| |+..+.... ....+.-..+++.|.+.+|.+ .++++++++||+++| +.+.+++. T Consensus 326 a~~k~~~fg~~~~~~~r-la~~i~~~~----~~~~~~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~ 400 (409) T protein:vir:94 326 GRKAQRSLGAGLLNVAY-LAACLRDDA----PYLREQFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIR 400 (409) T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhCCC----CccccccccceEEeccCCCcchHHHHHHHHHHHHHHHhcccccchhHHH Confidence 99999999999999985 443333211 111122345788999776666 578899999999999 45667777 Q ss_pred HHHHHhcCCCCchHH Q lcl|Aclame:pro 467 EELSKIMGFELTEED 481 (527) Q Consensus 467 ~~L~~~g~~~~~e~~ 481 (527) ++| +++..| T Consensus 401 ~~l------G~~~~d 409 (409) T protein:vir:94 401 DLT------GIEGGE 409 (409) T ss_pred HHc------CCCCCC Confidence 766 355555 No 64 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=100.00 E-value=3.2e-48 Score=280.95 Aligned_cols=443 Identities=12% Similarity=0.068 Sum_probs=290.6 Q ss_pred HhhcccCCCCCCChHH-----------HHHHHHHHHHHHHhcCChhh--eEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 14 LRAGEANFPNAVTDFD-----------KARLASYRLYEDMYLTNTSD--YQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 14 ~~~~~~~~~~~v~~~d-----------~~Rl~aY~~~~~~y~~~~~~--~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) .+-=.+....-+++.| .++..+|+++.+||.|.+.- +-+.+ ..+....+.-.+-++|+|++.+.. T Consensus 1 ~~~~~~~~~~gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~--p~~~r~~~~v~nw~~~~Vd~~a~r 78 (474) T protein:vir:81 1 MIQQQTVRIPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLI--PPQYFNLGLVLGWTGKAVDALARR 78 (474) T ss_pred CcCCCcCcCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccc--cHHHHHHHhhcChHHHHHHHHHhh Confidence 1110111111222222 23566889999999998531 11111 111111122346688999999998 Q ss_pred hccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCC Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~ 160 (527) |.+ ..+....++.....|..||++|+|+.+..++++.|++-|.++..|..++.- -.++.|+.+.|.+.|.++||.. T Consensus 79 l~~--~Gf~~~d~~~~~~~l~~iw~~N~ld~~~~~~~~~al~~G~sf~~V~~~~d~--~~~~~i~~~sp~~~~~~~D~~~ 154 (474) T protein:vir:81 79 CNL--EGFVWPDGDLDSLGGTEVVDDNHLLSEIDSAIVAAMQHGPAFLINTVGEDD--EPEALIHVKDASEATGEWNRRR 154 (474) T ss_pred hcc--cceECCCCCccchHHHHHHHhcChhHHHHHHHHHHHhhCceeEEEecCCCC--CceeEEEEeccceEEEEEeCCC Confidence 844 223323334455567778889999999999999999999998888765321 1268889999999999998864 Q ss_pred CCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcc Q lcl|Aclame:pro 161 PGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE 240 (527) Q Consensus 161 ~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~ 240 (527) . ++......+ ..+.++..... + .|.+ +.+..-...+.-+.|. T Consensus 155 ~-~~~~al~~~-~~~~~g~~~~~------~---ly~~-------~~~~~~~~~~~~~~w~-------------------- 196 (474) T protein:vir:81 155 R-GLNNLLSII-DKDKEGKVLSL------A---LYLD-------NETVTAQRDKATLKWQ-------------------- 196 (474) T ss_pred C-cceeeeEEE-EEcCCCcEEEE------E---EEeC-------CcEEEEEEcCccceee-------------------- Confidence 3 444332222 23332221111 1 1111 1110000001111122 Q ss_pred cccccccccccceEeeCCCCCCCCccCCcccc-chHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc---CCCCccc- Q lcl|Aclame:pro 241 EEPLPEQITTLPVFHFRGHPIMNAMFGRSGLA-GLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR---DSRGNMV- 315 (527) Q Consensus 241 e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Le-dl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~---d~~G~~~- 315 (527) .++-++|++ +|||+|+|.+...+++|+|+|. ++++|+|++|++++++..+++|++.|..++.|+.+. +.+|++. T Consensus 197 ~~~~~~~~g-vPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~ 275 (474) T protein:vir:81 197 VDRDEHVYG-VPAQVLPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKS 275 (474) T ss_pred eccCCCCCC-cceEEecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccc Confidence 233578888 6999999998889999999994 899999999999999999999999999999998753 4567753 Q ss_pred ceecCCCeeEecCCC----------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHh Q lcl|Aclame:pro 316 PWTISPLGMVEHGQN----------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKL 385 (527) Q Consensus 316 p~~v~pg~~~el~~~----------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~ 385 (527) .|....+.||.++++ .+|++++ .+++++|.++++.+...++.+++||..+||-+..++..|+.||+..+ T Consensus 276 ~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~-~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~ 354 (474) T protein:vir:81 276 VWEARLGRIKGLPDDADADIPQLARADVKQFP-AASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQ 354 (474) T ss_pred hhhhhHHHHhcCCCcccccccccccccccccC-CCChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHH Confidence 466778889988865 4789998 46999999999999999999999999999954434445899999999 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc-cccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCC--ccH Q lcl|Aclame:pro 386 SAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDD-ADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGL--IPA 462 (527) Q Consensus 386 ~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~-~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGl--ls~ 462 (527) .+|..|+++||..|+.+|+|+++.. .++... +.... ...-..++++|.++.+++.++.+++++||+++|. .+. T Consensus 355 ~~l~~kae~k~~~fg~~l~~~~rla-~~i~~~---~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~ 430 (474) T protein:vir:81 355 YELIAEAEGAVDDFTPALRKAFIRA-LAMKNK---VAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAET 430 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCC---CCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcH Confidence 9999999999999999999987543 222211 11111 1123457789999999999999999999999984 334 Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 463 KKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 463 ~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) +++.++| +++..+++++.+...+ +.+ .++..+-.+.+.+..-.+ T Consensus 431 ~~~~~~l------g~t~~~i~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 431 EVGLELI------GLTPQQARRAMADKRR-VQG----RGTLQALIDRSNNGATAQ 474 (474) T ss_pred HHHHhhc------CCCHHHHHHHHHHHHH-HhH----HHHHHHHHhcCCCCCCCC Confidence 5555544 4788887776544322 111 112111111111111111 No 65 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=100.00 E-value=2.7e-46 Score=270.41 Aligned_cols=470 Identities=12% Similarity=0.145 Sum_probs=302.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEee--ecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI--LRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i--~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |.+.+ +.++.+...+. .+++... .++.....||.|++..+... ..++.....+.+-++-++.||++.+ T Consensus 16 ~~~~~----~~~~~~~~~~i---~~~~~~~---~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~s~n~~~~iv~~~a 85 (499) T protein:vir:80 16 MGLLK----SLKDVTDHKKV---NANDEDY---KYIDMWKRLYQGNYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMS 85 (499) T ss_pred hcccc----chhhhhcCCCC---cCCHHHH---HHHHHHHHHhcCCcchhhccccccCCCccccceeecchHHHHHHHHH Confidence 44421 22233322222 1344444 55666668899986544321 1112222234566788999999999 Q ss_pred hhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecC Q lcl|Aclame:pro 79 RFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDP 158 (527) Q Consensus 79 ~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~ 158 (527) +|| +|.+-.+++.++..++.|..|++.+.+..++.++...|.++|+++++++||.+ .+|.|..++|.++||++.+ T Consensus 86 ~~l-~~ep~~i~~~d~~~~e~l~~~~~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~----~~~~i~~v~a~~~~Pi~~d 160 (499) T protein:vir:80 86 KLL-FNEKVKINIDDETAEEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGN----KNVKVSFATADCMYPLSND 160 (499) T ss_pred Hhh-hCCcceEeeCCHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCcEEEEEEECCC----CcEEEEEEcCCceEEEEec Confidence 999 88888899999999999999998888999999999999999999999999964 2788999999999998765 Q ss_pred CCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccC Q lcl|Aclame:pro 159 RYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTL 238 (527) Q Consensus 159 d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~ 238 (527) . +++++|.|+..+...+ +.-.++.|.. . . +...-.+.|.+.. |....-+ .-+.++....+ .... T Consensus 161 ~--~~~~~~~f~~~~~~~~------~~y~~lE~h~-~-~-~~~~~~y~I~n~~--~~~~~~~-~lG~~v~l~~~--~~~~ 224 (499) T protein:vir:80 161 S--ENVDECLIANSFHKNN------KYYKLLEWNE-W-K-GEKEEVYTVTTEL--YQSDDPN-ELGGKVSLKLL--FNDI 224 (499) T ss_pred C--CCeEEEEEEEEEeecC------eEEEEEEEEE-e-c-ccceeeEEEEEEE--EeccCcc-ccCcccchhhh--ccCc Confidence 3 6799998886554311 1111222110 0 0 0000012222211 1000000 00001110000 0011 Q ss_pred cccccccccccccceEeeCC----CCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC--cCCCC Q lcl|Aclame:pro 239 TEEEPLPEQITTLPVFHFRG----HPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP--RDSRG 312 (527) Q Consensus 239 ~~e~~l~~pi~~iPVV~~pN----~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~--~d~~G 312 (527) ++...+ ..++.+|+++|+| ....++++|.|+++++++++|+||..+|+.+..++..-..+++...+-. .+.+| T Consensus 225 ~~~~~~-~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g 303 (499) T protein:vir:80 225 EPVVPL-PSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDG 303 (499) T ss_pred CCceee-cCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhhhhccCCCCC Confidence 111111 2356778888765 4456889999999999999999999999999999987777777544322 13344 Q ss_pred cccceecCCCe---eEe--cCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 313 NMVPWTISPLG---MVE--HGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 313 ~~~p~~v~pg~---~~e--l~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ...+..-.... .+. .++++ .+..++...-.+.+.+.++.+++.|...++++..+||.- .++..++.+++.+++ T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~-~~g~~TAtei~s~~~ 382 (499) T protein:vir:80 304 STTQYFDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFD-ENGLKTATEVVSEKS 382 (499) T ss_pred CcccCCCcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCC-cccchhHHHHHHHHH Confidence 43222111111 111 12222 356666555668899999999999999999999999954 345568889999999 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) +|.+++..|+..|...++++++-++ .+...|. +..........++|+|++.+|.|+++++++.++++++|++|.+|++ T Consensus 383 ~l~~~~~~~~~~~~~~l~~l~~~il-~~~~~~~-~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l 460 (499) T protein:vir:80 383 ETYQTKNSHSQLIEQGIKEMIVSIL-EVGKLIK-AYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIAL 460 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc-cccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHH Confidence 9999999999999999988876543 2222222 1222233456789999999999999999999999999999999998 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d 515 (527) .++ .+.++++++++++++++. .+..-|.. ..++-.|-+| T Consensus 461 ~~~-----~~~~d~ea~~el~~i~~E----~~~~~~~~-d~~g~~ge~e 499 (499) T protein:vir:80 461 QRA-----WNITEAEADEWAEMLAKE----KQAEIPNN-DMTGIFGEEE 499 (499) T ss_pred hhc-----CCCChHHHHHHHHHHHHH----hhcCCCCC-CccccCCCCC Confidence 765 457888888888887642 11111211 1122222222 No 66 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=100.00 E-value=4.5e-46 Score=269.19 Aligned_cols=480 Identities=11% Similarity=0.094 Sum_probs=311.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCC------CCC-----hHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPN------AVT-----DFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~------~v~-----~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~ 69 (527) |+.. +..+.|+++...-++ .+. ..+..++.+|+....||+|++-.+....--+.....+.+.++- T Consensus 1 m~~~----~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~ 76 (508) T protein:vir:15 1 MGLI----QRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINM 76 (508) T ss_pred CChH----HHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecch Confidence 6653 334455433111111 111 1355677889999999999976554321112222344567788 Q ss_pred hhHHHHhhhhhhccCccccccCc-chhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKK-DAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~-~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) ++.|+++.+++| +|-.-.+++. ++..++.|..+++.++|..++.++...|..+|+++||++||.. ++.|..++ T Consensus 77 ~~~i~~~~A~lv-~~e~~~i~v~~~~~~~e~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~~-----~~~i~~v~ 150 (508) T protein:vir:15 77 AKTAARRIASVV-FNEKAEIHVKDNNEADKFLNDVLEDNDFKNKFEEALEKGVALGGFAMRPYIDGN-----HIKIAWVR 150 (508) T ss_pred HHHHHHHHHhhh-hCCCceEEeCCchHHHHHHHHHHHhccHHHHHHHHHHHHhhcCceEEEEEEeCC-----eeEEEEEc Confidence 999999999999 7777778874 4556778999999889999999999999999999999999942 57788999 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |.++||++.+. +.++.+.|+.++.-.++.+. +.-+++.|- +..++| .+.|.+...+-. +-+ .-+.++. T Consensus 151 ad~~~P~~~d~--~~~~~~af~~~~~~~~~~~~--~~yt~lE~h-~~~~~~----~~~I~n~ly~~~--~~~-~lG~~v~ 218 (508) T protein:vir:15 151 ADQFYPLQSNT--NDISEAAIASRTQRTESNQT--KYYTLLEFH-QWQDNG----SYQITNELYKSD--SPD-IVGNQVP 218 (508) T ss_pred CCeeEEEEEcC--CCeEEEEEEEEEEeecCCCc--eEEEEEEEE-EEecCc----ceEEEEEEEecC--Cch-hcCcccc Confidence 99999985443 45888888876654433211 111122111 111222 244544432110 000 0011111 Q ss_pred ccceeeeccCcccccccccccccceEee----CCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEecc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHF----RGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDS 304 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~----pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g 304 (527) ...+..+...+ ++..-.++..+|.++| +|....++++|.|+++++++++|+||.+.|+.++..+.+-..+++.+. T Consensus 219 l~~~~e~~~l~-~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~ 297 (508) T protein:vir:15 219 LSTLPVYKELA-PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPG 297 (508) T ss_pred hhhcccccCCC-cceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcccceeechH Confidence 11111111111 1111224556677776 455556899999999999999999999999999999766666777666 Q ss_pred CCCcCCCCcccceecCCCee--EecCC--CCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH Q lcl|Aclame:pro 305 APPRDSRGNMVPWTISPLGM--VEHGQ--NNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) Q Consensus 305 ~~~~d~~G~~~p~~v~pg~~--~el~~--~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A 380 (527) +-..|+.|.+. +....... +..++ +..++.+....-...|.+.++.+++.+...++++...||- +.++..++.+ T Consensus 298 ~l~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~-~~~~~~TAte 375 (508) T protein:vir:15 298 MLRFDDEHKPT-FDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSY-SNDGVKTATE 375 (508) T ss_pred HhcCCCCCccc-cCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhccc-ccCccccHHH Confidence 54455555543 12221111 12222 2346666544466789999999999999999999999993 3345568889 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc-------ccccceeEEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGID-------DADKKLTVTITFRDPKPVNNEKRFAQLLE 453 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~-------~~~~~~~v~v~w~d~lP~D~~~~i~~~v~ 453 (527) ++.+++.+++.++.|+..+...++++.+-++ .+...|.....+ .......++|.|+|.+|.|+++++++.++ T Consensus 376 i~s~~~~~~~t~~~~~~~~~~al~~lv~~il-~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~ 454 (508) T protein:vir:15 376 VVSNNSMTYQTRSSYLTMVEKAIDELCQSIF-ELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAK 454 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHH Confidence 9999999999999999999999988875543 222222211111 11234568899999999999999999999 Q ss_pred HHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccccc-ccCCCCc Q lcl|Aclame:pro 454 LWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMA-AEQGIPD 515 (527) Q Consensus 454 l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~-~d~g~~d 515 (527) ++++|++|.+++++++ ++.+++++++++++++.. .+..++.+.+.. .++|..| T Consensus 455 ~v~aGi~s~e~~i~~~-----~g~~deea~~el~ri~~E----~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 455 VLAIGALSKQTFLQRN-----YGMTDEQAAEELAKIQSE----APTDTFEGGRSAILNGGDGE 508 (508) T ss_pred HHhcCCCCHHHHHHhc-----CCCChHHHHHHHHHHHHh----ccccCccccccccCCCCCCC Confidence 9999999999999765 457889999999988753 333444443322 2222223 No 67 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=100.00 E-value=9.7e-48 Score=278.32 Aligned_cols=395 Identities=12% Similarity=0.079 Sum_probs=270.6 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhh--eEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSD--YQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~--~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |-+ +. ... +-..-.+|..+|+.+.+||.|.+.- +.+.+. ..-+...+.-.+=++|+|++.+ T Consensus 1 ~~~--~~---i~~-----------L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p-~~~~~~~~~v~nw~~~iVds~a 63 (409) T protein:vir:16 1 MTE--KG---IGY-----------LRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIP-QALSQQYRSILGWCAKGVDSLA 63 (409) T ss_pred CCH--HH---HHH-----------HHHHHHHHhHHHHHHHHHHhccCchhhcchhhh-HHHHHHHhhhcChhHHHHHHhH Confidence 211 00 001 1111234678999999999997532 111110 0000111223466889999999 Q ss_pred hhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecC Q lcl|Aclame:pro 79 RFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDP 158 (527) Q Consensus 79 ~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~ 158 (527) ..|.+ . .++++++. |..|+++|+|+.+..++++.|++-|.++-.|+-+. .+ ++.|+.++|.+.|.++|| T Consensus 64 ~rl~~--~-Gf~~~d~~----l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~-dg---~~~i~~~sP~~~~~i~D~ 132 (409) T protein:vir:16 64 DRLVF--R-EFENDDFT----VNEIFEENNPDIFFDSTVLSALIASCSFTYISKGE-ND---AVRLQVIEATNATGIIDP 132 (409) T ss_pred hhccc--c-cccCcchH----HHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCC-CC---ceEEEEEcccceEEEeec Confidence 98854 2 23455544 55677889999999999999999999876665332 22 688899999999999988 Q ss_pred CCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccC Q lcl|Aclame:pro 159 RYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTL 238 (527) Q Consensus 159 d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~ 238 (527) . .+++...+-. |...++.. .+. . + .|.++ .+... + . .+ T Consensus 133 ~-~~~~~~a~~~--~~~d~~~~---~~~-~-~---~~~~~-------~~~~~---~-----~----------------~~ 170 (409) T protein:vir:16 133 I-TGLLTEGYAV--LERDENNN---VVL-E-A---HFLPD-------RTDYY---Y-----R----------------DS 170 (409) T ss_pred c-cccceeeeEE--EEecCCCc---eEE-E-E---EEecC-------cEEEE---E-----e----------------cC Confidence 5 3355443222 22221111 110 0 0 11110 00000 0 0 00 Q ss_pred cccccccccccccceEeeCCCCCCCCccCCcccc-chHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCccc-c Q lcl|Aclame:pro 239 TEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLA-GLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMV-P 316 (527) Q Consensus 239 ~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Le-dl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~-p 316 (527) ......|||+++||||+|+|.+...++||+|+|+ .+++|+|++|++++++..+++|++.|.+++.|+. .+|++. . T Consensus 171 ~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d---~d~~~~~~ 247 (409) T protein:vir:16 171 RNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLS---DDAEPMET 247 (409) T ss_pred ccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecC---CCCCccch Confidence 1112248999999999999998889999999995 5999999999999999999999999999999984 344443 4 Q ss_pred eecCCCeeEecCCC-----CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHH Q lcl|Aclame:pro 317 WTISPLGMVEHGQN-----NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSS 391 (527) Q Consensus 317 ~~v~pg~~~el~~~-----~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlak 391 (527) |...++.||.++++ .+|++++. +++.+|.+.++.+...++.+++||..+||..- .+-.||.||+..+.+|..| T Consensus 248 ~~~~~~~i~~~~~d~~g~~~~v~q~~~-~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~-~NpsSa~Ai~a~~~~L~~k 325 (409) T protein:vir:16 248 WKATVSSMLQFTKDEDGDKPTLGQFTQ-PSMSPFTEQLRTAAAGFAGETGLTLDDLGFVS-DNPSSVEAIKASHENLRLA 325 (409) T ss_pred hhhhhhHhhccCCCCCCCCceEEecCC-CChhHHHHHHHHHHHHHhhhcCCCHHHccccc-CchhHHHHHHHHHHHHHHH Confidence 78889999998743 57999984 79999999999999999999999999999432 1224889999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC---HHHHHHHHHHHHhcCCccH--HHHH Q lcl|Aclame:pro 392 CAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN---NEKRFAQLLELWEAGLIPA--KKLT 466 (527) Q Consensus 392 v~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D---~~~~i~~~v~l~~aGlls~--~ta~ 466 (527) +++||..|+.+|+|++|. +..+.-. .....+....+++.|.+..|.+ .++.++.++||+++|.... ++.. T Consensus 326 a~~k~~~fg~~l~~~~rl-a~~~~~~----~~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~ 400 (409) T protein:vir:16 326 GRKAQRSLGAGLLNVAYL-AACLRDD----VPYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIR 400 (409) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhcC----CCccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHH Confidence 999999999999998753 3333211 1111222345788999776544 7899999999999996554 4455 Q ss_pred HHHHHhcCCCCchHH Q lcl|Aclame:pro 467 EELSKIMGFELTEED 481 (527) Q Consensus 467 ~~L~~~g~~~~~e~~ 481 (527) ++| +++..| T Consensus 401 ~~~------g~~~~d 409 (409) T protein:vir:16 401 DLT------GIKGAE 409 (409) T ss_pred Hhc------cCCCCC Confidence 444 355555 No 68 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=100.00 E-value=1.8e-45 Score=265.87 Aligned_cols=472 Identities=12% Similarity=0.084 Sum_probs=307.4 Q ss_pred CCCChhhhhhhhHHhhc-------------ccCCCCC-CChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAG-------------EANFPNA-VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIY 66 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~-------------~~~~~~~-v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~ 66 (527) |+.. +..+.|+.+ -++-+.+ +++... +++++...||.|++..+.-.--.++....+.+. T Consensus 1 m~~~----~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~---~~i~~~~~~Y~g~~~~l~~~~~~~~~~~~~~~s 73 (505) T protein:vir:79 1 MAFW----DTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEV---ERIARDKRYYMDDFKQVTHKNSYGDTQKHELQS 73 (505) T ss_pred CchH----HHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHH---HHHHHHHHHhcCCCccccccccCCCccccceee Confidence 5542 223333333 2211122 344444 445556678999987764322234444455666 Q ss_pred CCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEE Q lcl|Aclame:pro 67 VPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHE 146 (527) Q Consensus 67 ~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~ 146 (527) ++-++.|+++.+++| +|-.-.|+++++..++.|..+++.+++..++.++...|..+|+++|+++||. .+|.|.. T Consensus 74 lnl~~~i~~~~A~ll-~~e~~~i~~~d~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~~~k~~~D~-----~~~~i~~ 147 (505) T protein:vir:79 74 VNVTKLASAKLASLI-FNEQCQVTVSDETANDFLDDVFQQNDFYTTFEEKLEEWIALGSGCVRPYVDS-----GKIKLAW 147 (505) T ss_pred cchHHHHHHHHHhhh-cCCCceeecCChHHHHHHHHHHHhccHHHHHHHHHHHHhhcCCeEEEEEEeC-----CceEEEE Confidence 788999999999999 8777789999999999999999988899999999999999999999999994 2567888 Q ss_pred EccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccc Q lcl|Aclame:pro 147 VDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESP 226 (527) Q Consensus 147 vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~ 226 (527) ++|.++||++.+. ++++.++|+.+|..-++.....- +++.| ....+| .+.|.+...+..-. +.-+.+ T Consensus 148 v~ad~~~P~~~d~--~~~~~~a~~~~~~~~~~~~~~~y--t~lE~--h~~~~~----~~~I~n~ly~~~~~---~~lG~~ 214 (505) T protein:vir:79 148 ATADQVYPLQADT--NQVNELAIASRTTEVENHRTIYY--TLLEF--HQWDHG----DYVITNELYRSEAA---ETVGIN 214 (505) T ss_pred EcCCeeEEEEEcC--CCeEEEEEEEEEEEecCCcceEE--EEEEE--EEecCc----eEEEEEEEEecCCC---CccCcc Confidence 9999999986443 46888888877754333221110 11111 111111 13444433221100 000011 Q ss_pred ccccceeeeccCcccccccccccccceEeeCC----CCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe Q lcl|Aclame:pro 227 LEPDDIKKLSTLTEEEPLPEQITTLPVFHFRG----HPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) Q Consensus 227 ~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN----~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~ 302 (527) +....+..+. +.+++--..+++.+++++||| ..-..+++|.|+++++++++|+||.++|+.++..+.+...+++. T Consensus 215 v~l~~~~~~~-~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~ 293 (505) T protein:vir:79 215 VPLNSLEQYE-GLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVP 293 (505) T ss_pred cchhhccccc-ccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeec Confidence 1111111110 111111113455667777754 45567899999999999999999999999999999988888885 Q ss_pred ccCCCcCCC--Cccc----ceecCCCeeE---ec-CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccc Q lcl|Aclame:pro 303 DSAPPRDSR--GNMV----PWTISPLGMV---EH-GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDA 372 (527) Q Consensus 303 ~g~~~~d~~--G~~~----p~~v~pg~~~---el-~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~ 372 (527) ..+-..+.. |... +..-.-..++ .. +.++.++.++..--.+.|.+.++.++++|...++++...||-. . T Consensus 294 ~~~l~~~~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~-~ 372 (505) T protein:vir:79 294 AEWLKTGSSYGGQASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTS-P 372 (505) T ss_pred hHHhcccCCCCcccccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCC-c Confidence 544322221 1110 0001111111 11 2235566776544568999999999999999999999999943 3 Q ss_pred cccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhcccccccceeEEEEeCCCCCCCHHHH Q lcl|Aclame:pro 373 AVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYE-----GVGIDDADKKLTVTITFRDPKPVNNEKR 447 (527) Q Consensus 373 s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e-----~v~~~~~~~~~~v~v~w~d~lP~D~~~~ 447 (527) ++..++.+++.++++|+++++.++..+...+.++.+-++. +...|. ............++|.|+|.+|.|++++ T Consensus 373 ~~~~TAtei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~-~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~ 451 (505) T protein:vir:79 373 SGIQTATEVVTNNSQTYQTRSSYITQVEKTIKALTYAILE-LASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESK 451 (505) T ss_pred cccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHH Confidence 4556888999999999999999999988888776644321 111111 1111223345678899999999999999 Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccccccc Q lcl|Aclame:pro 448 FAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAE 510 (527) Q Consensus 448 i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d 510 (527) ++..++++++|++|.++++.++ ++.++++++++++||+.. .+..+|--.+++|| T Consensus 452 ~~~~~~~v~~Gi~s~e~~l~~~-----~~~~eeea~~el~ri~~E----~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 452 RAADLQAVQAQVMPKKQFLMRN-----YGLDEEEADEWLAQIDAE----NSTAEPEFNQFGGD 505 (505) T ss_pred HHHHHHHHHcCCCCHHHHHHhc-----CCCChHHHHHHHHHHHHh----ccccCCCchhccCC Confidence 9999999999999999999875 456889999999988642 23333433444444 No 69 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=100.00 E-value=3.4e-44 Score=258.89 Aligned_cols=468 Identities=11% Similarity=0.081 Sum_probs=303.2 Q ss_pred CCCChhhhhhhhHHhhccc-----CCCC------CCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEA-----NFPN------AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~-----~~~~------~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~ 69 (527) |+. .+..+.|++... ...+ -|+ .+..++++|+....||.|++..+.-.-..++........++- T Consensus 1 m~~----~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl 75 (500) T protein:vir:98 1 MGV----IQKIKNLVTRSKYVMTTQSLTNITDHPKIA-ISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPI 75 (500) T ss_pred Cch----HHHHHHHHHHHHHHhhcchhhhhhcccccc-CCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecch Confidence 544 233444443211 0001 122 344688999999999999976653221112222334456678 Q ss_pred hhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) ++.|+++.+++| +|-.-.+++.++..++.|..+++.+++...+..+...|..+|+++|+++||. .+|.|..++| T Consensus 76 ~~~i~~~~A~lv-~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-----~~~~I~~v~a 149 (500) T protein:vir:98 76 ARTAAKKIASLV-FNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG-----DKVRVAFVQA 149 (500) T ss_pred HHHHHHHHhhhh-cCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC-----CceEEEEEcC Confidence 999999999999 8777788999999999999999988999999999999999999999999994 2577889999 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecc----ccccc------- Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEEL----YEPGK------- 218 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~----~~~g~------- 218 (527) .++||++.+. +.++.++++.++....+.+... =+++.| ....+|.+ +.|.+.... -.+|. T Consensus 150 d~~~P~~~d~--~~~~~~a~~~~~~~~~~~~~~~--yt~lE~--h~~~~~~~---~~I~n~ly~~~~~~~lG~~v~l~~~ 220 (500) T protein:vir:98 150 PVFLPLQSNT--QDVSSAAVVIKSVKTINGKEVY--YTLIEF--HEWQSSDD---YVISNELYRSDDKAKVGSRVPLSEV 220 (500) T ss_pred CeeEEEEEcC--CCeEEEEEEEEEeeeecCCceE--EEEEEE--EEEeCCce---eEEEEEEEecccccccCcccccccc Confidence 9999986543 2456666665443322211110 001111 00111111 223322210 00110 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) |.+.. .......++.|+-....+.++|....++++|.|.++++++++|+||.+.|+.++..+.+... T Consensus 221 ~~~l~-------------~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~ 287 (500) T protein:vir:98 221 YKDLK-------------DEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRR 287 (500) T ss_pred cCCcC-------------cceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcce Confidence 11110 00112334545444444455777778999999999999999999999999999999987666 Q ss_pred eEEeccCCCcC---CCCcccc-eecCCCe-e---Ee--cCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcc Q lcl|Aclame:pro 299 FYATDSAPPRD---SRGNMVP-WTISPLG-M---VE--HGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVG 368 (527) Q Consensus 299 ~~~~~g~~~~d---~~G~~~p-~~v~pg~-~---~e--l~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G 368 (527) +++.+..-..+ .+|+..+ ....+.. + +. .+.+..++.++...-.+.|.+.++.+++.+...++++...|| T Consensus 288 i~v~~~~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~ 367 (500) T protein:vir:98 288 VAVPESLTALTVRTTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFS 367 (500) T ss_pred eeechHHhcccCCCCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccc Confidence 77765543222 2444321 1111111 1 11 223344666655445678999999999999999999999998 Q ss_pred cccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 369 VVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 369 ~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i 448 (527) .. .++..++.+++.+++++++++.+++..+...++++.+-++. +. +.-.+..........++|.|+|.++.|.++++ T Consensus 368 ~~-~~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~-~~-~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~ 444 (500) T protein:vir:98 368 FD-GKSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFE-IA-KAYDLYQSEVPSMDNISISLDDGVFTDRDAEL 444 (500) T ss_pred cC-cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHhhcCCCCCCCcceEEEeCCCCCCCHHHHH Confidence 43 34556788999999999999999999999999888765432 21 21123333334445688999999999999999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) +..++++++|++|.++++.++ ++.+++++++++++++.. ..+..+ ...+.+.+=++ T Consensus 445 ~~~~~~v~aGi~s~~~~i~~~-----~g~~eeea~~~l~~i~~E------~~~~~~--~~~~~~~~~g~ 500 (500) T protein:vir:98 445 DYWIKVVNAGFGTREMAIQKV-----LNVTEEKAQEIAAEINTG------IVDEIN--QQRTDTHLYGE 500 (500) T ss_pred HHHHHHHHcCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHh------ccccCC--CCCccccccCC Confidence 999999999999999999876 557888888888888642 111110 11122222111 No 70 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=100.00 E-value=3.4e-44 Score=258.89 Aligned_cols=468 Identities=11% Similarity=0.081 Sum_probs=303.2 Q ss_pred CCCChhhhhhhhHHhhccc-----CCCC------CCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEA-----NFPN------AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~-----~~~~------~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~ 69 (527) |+. .+..+.|++... ...+ -|+ .+..++++|+....||.|++..+.-.-..++........++- T Consensus 1 m~~----~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl 75 (500) T protein:vir:30 1 MGV----IQKIKNLVTRSKYVMTTQSLTNITDHPKIA-ISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPI 75 (500) T ss_pred Cch----HHHHHHHHHHHHHHhhcchhhhhhcccccc-CCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecch Confidence 544 233444443211 0001 122 344688999999999999976653221112222334456678 Q ss_pred hhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) ++.|+++.+++| +|-.-.+++.++..++.|..+++.+++...+..+...|..+|+++|+++||. .+|.|..++| T Consensus 76 ~~~i~~~~A~lv-~~e~~~i~~~d~~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-----~~~~I~~v~a 149 (500) T protein:vir:30 76 ARTAAKKIASLV-FNEQAEIKVDDDAANEFISETLKNDRFNKNFERYLESCLALGGLAMRPYVDG-----DKVRVAFVQA 149 (500) T ss_pred HHHHHHHHhhhh-cCCcceEecCChHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCEEEEEEEeC-----CceEEEEEcC Confidence 999999999999 8777788999999999999999988999999999999999999999999994 2577889999 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecc----ccccc------- Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEEL----YEPGK------- 218 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~----~~~g~------- 218 (527) .++||++.+. +.++.++++.++....+.+... =+++.| ....+|.+ +.|.+.... -.+|. T Consensus 150 d~~~P~~~d~--~~~~~~a~~~~~~~~~~~~~~~--yt~lE~--h~~~~~~~---~~I~n~ly~~~~~~~lG~~v~l~~~ 220 (500) T protein:vir:30 150 PVFLPLQSNT--QDVSSAAVVIKSVKTINGKEVY--YTLIEF--HEWQSSDD---YVISNELYRSDDKAKVGSRVPLSEV 220 (500) T ss_pred CeeEEEEEcC--CCeEEEEEEEEEeeeecCCceE--EEEEEE--EEEeCCce---eEEEEEEEecccccccCcccccccc Confidence 9999986543 2456666665443322211110 001111 00111111 223322210 00110 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) |.+.. .......++.|+-....+.++|....++++|.|.++++++++|+||.+.|+.++..+.+... T Consensus 221 ~~~l~-------------~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~ 287 (500) T protein:vir:30 221 YKDLK-------------DEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRR 287 (500) T ss_pred cCCcC-------------cceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcce Confidence 11110 00112334545444444455777778999999999999999999999999999999987666 Q ss_pred eEEeccCCCcC---CCCcccc-eecCCCe-e---Ee--cCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcc Q lcl|Aclame:pro 299 FYATDSAPPRD---SRGNMVP-WTISPLG-M---VE--HGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVG 368 (527) Q Consensus 299 ~~~~~g~~~~d---~~G~~~p-~~v~pg~-~---~e--l~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G 368 (527) +++.+..-..+ .+|+..+ ....+.. + +. .+.+..++.++...-.+.|.+.++.+++.+...++++...|| T Consensus 288 i~v~~~~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~ 367 (500) T protein:vir:30 288 VAVPESLTALTVRTTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFS 367 (500) T ss_pred eeechHHhcccCCCCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccc Confidence 77765543222 2444321 1111111 1 11 223344666655445678999999999999999999999998 Q ss_pred cccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 369 VVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 369 ~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i 448 (527) .. .++..++.+++.+++++++++.+++..+...++++.+-++. +. +.-.+..........++|.|+|.++.|.++++ T Consensus 368 ~~-~~g~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~-~~-~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~ 444 (500) T protein:vir:30 368 FD-GKSMKTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFE-IA-KAYDLYQSEVPSMDNISISLDDGVFTDRDAEL 444 (500) T ss_pred cC-cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHhhcCCCCCCCcceEEEeCCCCCCCHHHHH Confidence 43 34556788999999999999999999999999888765432 21 21123333334445688999999999999999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~ 517 (527) +..++++++|++|.++++.++ ++.+++++++++++++.. ..+..+ ...+.+.+=++ T Consensus 445 ~~~~~~v~aGi~s~~~~i~~~-----~g~~eeea~~~l~~i~~E------~~~~~~--~~~~~~~~~g~ 500 (500) T protein:vir:30 445 DYWIKVVNAGFGTREMAIQKV-----LNVTEEKAQEIAAEINTG------IVDEIN--QQRTDTHLYGE 500 (500) T ss_pred HHHHHHHHcCCCCHHHHHHhc-----CCCCHHHHHHHHHHHHHh------ccccCC--CCCccccccCC Confidence 999999999999999999876 557888888888888642 111110 11122222111 No 71 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=100.00 E-value=7.8e-44 Score=256.93 Aligned_cols=479 Identities=10% Similarity=0.057 Sum_probs=305.3 Q ss_pred CCCChhhhhhhhHHhhcccCC-------------CCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCC-ccccccccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANF-------------PNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGG-DEGDQRPIY 66 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~-------------~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~-d~~~~~~~~ 66 (527) |... +..+.|+.+.... -=.+|+....|++.|+. +|.|++.++.-.- +. .....+... T Consensus 1 m~~~----~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~---~Y~g~~~~~~~~~-~~~~~~~~~~~s 72 (517) T protein:vir:98 1 MKVI----QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLR---QYEGDYPQVEYIN-SQGKIQERDYMT 72 (517) T ss_pred CchH----HHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHH---HhcCCCccccccc-ccccccccceee Confidence 4332 2223333221100 02467788999999865 4999988875321 11 111234456 Q ss_pred CCchhHHHHhhhhhhccCccccccCcch-----------hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCC Q lcl|Aclame:pro 67 VPNGEKLIEAKMRFLGQGLKWEFSKKDA-----------KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDE 135 (527) Q Consensus 67 ~p~~~k~v~~~~~~Lg~~~~~~i~~~~~-----------~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~ 135 (527) ++-+++|..+.+++| ++-.-.|++.++ ..++.|...++.++|...+..+.-.|..+|+++||++||. T Consensus 73 l~~~~~i~~~~A~Ll-~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~- 150 (517) T protein:vir:98 73 LNLRKLSADVLSGLV-FNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQHNKFIKNLSDYLEPTFALGGLTVRPYVDN- 150 (517) T ss_pred cCcHHHHHHHhhhhh-cCCcceEEecccccccccccchhHHHHHHHHHHHhccHHHHHHHHHHHHhhhCCEEEEEEEeC- Confidence 677899999999999 776666665542 2578899999988999999999999999999999999994 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEEe-eeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccc Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDE-YPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELY 214 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~-~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~ 214 (527) + ++.|..++|.++||...+ . +.++.++|+.. +...++....+....+-.|.+.-..+| +..|.++..+. T Consensus 151 -~---~~~I~~v~ad~~~Pl~~~-~-~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~----~y~I~n~ly~s 220 (517) T protein:vir:98 151 -G---EIEFSWALANAFYPLRSN-S-NGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGES----LYVITNELYKS 220 (517) T ss_pred -C---eeEEEEEcCCeeEEEEec-C-CCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCC----cEEEEEEEEec Confidence 2 567889999999996532 2 45777777753 333322221111001111110000111 23444443222 Q ss_pred ccccccccccccccccceeeeccCcccccccccccccceEee----CCCCCCCCccCCccccchHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 215 EPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHF----RGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDL 290 (527) Q Consensus 215 ~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~----pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~ 290 (527) .- +..-+.++....+ +. +..++..-.++..+++++| +|....++++|.|.+++.++++++||.+.|++++ T Consensus 221 ~~---~~~lG~~v~L~~~--~e-~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~ 294 (517) T protein:vir:98 221 DN---EGEIGKRIPLEEL--YE-GMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWW 294 (517) T ss_pred CC---Ccccccccccccc--cc-CCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHH Confidence 10 0000111111111 00 0111111123344555565 4555568999999999999999999999999999 Q ss_pred HHHHhCCceEEeccCCCcCC--CCcccc-eecCCCe---eEecCCCCc-eEEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 291 IMVFGGLGFYATDSAPPRDS--RGNMVP-WTISPLG---MVEHGQNNK-IYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 291 i~~~~g~P~~~~~g~~~~d~--~G~~~p-~~v~pg~---~~el~~~~k-~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) ..+.+...+++.+.+-..+. .|...+ .--.... .|..+.+.. +..++...=...|.+.++.+++.|...++++ T Consensus 295 e~~~g~~~i~vp~~~l~~~~~~~g~~~~~~~d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls 374 (517) T protein:vir:98 295 EIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLS 374 (517) T ss_pred HHHhCCcceecChhhhccccCCCCcccCCCCCcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCC Confidence 99998777888655433222 111110 0001111 133333322 3444432234789999999999999999999 Q ss_pred hhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC Q lcl|Aclame:pro 364 DIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN 443 (527) Q Consensus 364 ~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D 443 (527) ...||-. ..+..+..+++.+.+++++.+.++|..+...++++.+-+. .+. +...+..........++|.|+|.++.| T Consensus 375 ~~t~~~~-~~~~kTATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~-~l~-~~~~~~~~~~~~~~~v~v~f~D~i~~D 451 (517) T protein:vir:98 375 VGTFSFD-GRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVL-ELA-KTYKLFGGEIPSAEHIGVDFDDGVFQD 451 (517) T ss_pred ccccccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHhhcCCCCCCCcceEEEcCCCCCCC Confidence 9999943 2344467789999999999999999999999988875442 222 212233333344566889999999999 Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-ccc Q lcl|Aclame:pro 444 NEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DEE 517 (527) Q Consensus 444 ~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~~ 517 (527) ++++++..++++++|++|.+++++++ ++.+++++++++.+++. +.+..|+.+.....+++.+ |++ T Consensus 452 ~~~~~~~~~~~v~aG~ms~~~~i~~~-----~g~~eeeA~~e~~~i~~----E~~~~~~~~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 452 RSALLRFYGQAKTFGFIPTVEAIQRI-----FKVPKKTAEQWLEEIRK----DQIELDPVTISQRAQKRMFGDEE 517 (517) T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHh-----CCCChHHHHHHHHHHHH----hccccCCCCccccccCCCCCCCC Confidence 99999999999999999999999887 56789999888888753 4456788777666666666 444 No 72 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=100.00 E-value=4.1e-43 Score=252.97 Aligned_cols=465 Identities=11% Similarity=0.097 Sum_probs=293.1 Q ss_pred CCC--ChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEee-----------ecCCcccccccccC Q lcl|Aclame:pro 1 MGQ--DKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI-----------LRGGDEGDQRPIYV 67 (527) Q Consensus 1 m~~--~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i-----------~~g~d~~~~~~~~~ 67 (527) |.- +.|+| -+.++.|.. ++.+-.|+..|.-+ |.++..++..+ -+|- ..+.+-+ T Consensus 1 ~~~~~~~~~~--i~~w~~~~~------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~ 66 (518) T protein:vir:78 1 MGVWSVMTRF--IKGWLNGKP------NGSEPELIPKYLPL---VPDNQKEWSKDSYLTSLWAQGYVPTV---HDKLMNS 66 (518) T ss_pred CcchhhHHHH--HHHhhcCCC------CccchhccHHHhhh---cccchhhhhhhhhhhhhcccCCCCcc---ccccccC Confidence 432 23332 122222222 22455555555332 22221111100 1122 2355666 Q ss_pred CchhHHHHhhhhhhccCccccccC------cchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSK------KDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~------~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) |=++.|+++.+++| +|-.-.|++ .++..++.|..+++.+++..++..+...|..+|+++||++||. + + T Consensus 67 ~l~~~i~~~~A~ll-~~e~~~i~v~~~~~~d~e~~~~~l~~il~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~--~---~ 140 (518) T protein:vir:78 67 GTGNEIVVVAAEYI-SGKPLSIDVTGVNGSKDENLTKQLKEALRIDNFDSKSVKIVELAGGSGVSAVKINILN--G---R 140 (518) T ss_pred ChHHHHHHHHHHhh-cCCCceEEecCccccCcHHHHHHHHHHHHhccHHHHHHHHHHHhhccCceEEEEEEEC--C---e Confidence 66899999999999 766555544 2355788999999888999999999999999999999999994 2 6 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceee-e----------------eeeeeeeeeecCCccccCC Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEK-C----------------ARVQKYMKTLDDDGKPVPG 204 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k-~----------------~rr~~~~~~~~~~g~p~~~ 204 (527) |.|..++|.++||.+++ +++++|-|+.+....+ ++..+. + .++|+|..+..+.+..+.. T Consensus 141 ~~i~~v~ad~~~P~~~~---g~~~~~~f~~~~~~~~-k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~ 216 (518) T protein:vir:78 141 PSISVHSSSQFWIDFKN---NEPFRFNFFEEIPTSN-KADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPI 216 (518) T ss_pred eEEEEEcCCeeEEEeec---CcEEEEEEEEEeecCC-cceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccc Confidence 78899999999999865 4678887764333221 111110 0 1233443333333333222 Q ss_pred ccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCC----CCCCCccCCccccchHHHHHH Q lcl|Aclame:pro 205 GAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGH----PIMNAMFGRSGLAGLESLIAS 280 (527) Q Consensus 205 g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~----~~~~~~wG~S~Ledl~~l~de 280 (527) ..+...+.....-.|+ ...++...++....+.++++||. .-.+++||.|+++++++++++ T Consensus 217 ~~~~~~~~l~~~~~~~----------------~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~ 280 (518) T protein:vir:78 217 SAERLPEQITSYLHTN----------------DIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFA 280 (518) T ss_pred cccccccccccccccc----------------cCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHH Confidence 2222211111111111 11122233444455667777764 345788999999999999999 Q ss_pred HHhhHHHHHHHHHHhCCceEEeccCCCcCCCCc---cc-ceecCCCeeEe----cCCCC----ceEEeccccChHHHHHH Q lcl|Aclame:pro 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGN---MV-PWTISPLGMVE----HGQNN----KIYRVNGVASLEPSQTH 348 (527) Q Consensus 281 Ln~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~---~~-p~~v~pg~~~e----l~~~~----k~~~ld~~~~la~~~~~ 348 (527) ||.+.|+.++.++.+...|++.+.+-..+.+|. .. .+......... .+.++ .++.+.-..-.+.|.+. T Consensus 281 lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~ 360 (518) T protein:vir:78 281 VDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRET 360 (518) T ss_pred HHHHHHHHHHHHHhCCceeeechhHhccCCCCCCCccccccCCCCceEEEecCcCCCCCccccceeeeecccChHHHHHH Confidence 999999999999997777888766544343222 11 11222121111 11111 14455544456789999 Q ss_pred HHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cccccc Q lcl|Aclame:pro 349 MNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGV-GIDDAD 427 (527) Q Consensus 349 ~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v-~~~~~~ 427 (527) ++.+++.+...++++.-.||. .++..||.+++.+.+++.+++..+|..+...++++.+.++ .++..|... ...... T Consensus 361 ~~~~l~~~~~~~G~s~~tfg~--~~~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~-~l~~~~~~~~~~~~~~ 437 (518) T protein:vir:78 361 MEYFAQKAVSKSGYNPATFNL--GNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFL-YLLTGGTNNKEKAIMR 437 (518) T ss_pred HHHHHHHHHHhhCCChhhcCc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCccccccCC Confidence 999999999999999999984 3566799999999999999999999998888887765442 233232221 112233 Q ss_pred cceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccc Q lcl|Aclame:pro 428 KKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQM 507 (527) Q Consensus 428 ~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~ 507 (527) ..+.++|.|+|.+|.|++++++...+++++|++|.+++++++ +.+.++++++++++||+.. .+.+...+|-...+ T Consensus 438 ~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGimS~e~~i~~~----~~~~~deea~~e~~ri~~E-~~~~~~~~p~~~~g 512 (518) T protein:vir:78 438 DEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLI----HPKWEDEEIQAEVKRIYLE-NAIGEVPDPEAIGG 512 (518) T ss_pred CceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHh----CCCCCHHHHHHHHHHHHHH-hcccCCCCCccccC Confidence 456789999999999999999999999999999999999976 3356888899998888753 12122234433334 Q ss_pred cccCCC Q lcl|Aclame:pro 508 AAEQGI 513 (527) Q Consensus 508 ~~d~g~ 513 (527) +...|+ T Consensus 513 ~~~~~g 518 (518) T protein:vir:78 513 METKGG 518 (518) T ss_pred CCCCCC Confidence 443333 No 73 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=100.00 E-value=1.4e-41 Score=244.64 Aligned_cols=492 Identities=9% Similarity=0.071 Sum_probs=315.2 Q ss_pred CCCChhhhhhhhHHhhccc------CCCCC----CChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCch Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEA------NFPNA----VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNG 70 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~------~~~~~----v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~ 70 (527) |+.. +..+.|++... .+-++ -+..+..++.+|+....||.|++.++.-.-..+.....+.+.++-+ T Consensus 1 m~~~----~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~ 76 (522) T protein:vir:47 1 MSLF----QKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIA 76 (522) T ss_pred CchH----HHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchH Confidence 5542 22233332111 11111 1224678899999999999999777643321222223355667889 Q ss_pred hHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 71 EKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 71 ~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) +.|+++.+++| +|-.-.|++.++..++.|...++.+++..++.++--.|..+|+++||++||. .++.|..++|. T Consensus 77 ~~i~~~~A~lv-~~e~~~i~v~d~~~~~~l~~~l~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-----~~~~i~~v~ad 150 (522) T protein:vir:47 77 RTASKKIASLV-YNEQATITTKNEILQKFLDDMLTNDRFNKNFERYLESCLALGGLAMRPYIDG-----DKVRVAFIQAP 150 (522) T ss_pred HHHHHHHhhhh-cCCcceeecCChHHHHHHHHHHhhcchHHHHHHHHHHhhccCCEEEEEEEcC-----CceEEEEEcCC Confidence 99999999999 8777788999999999999999988999999999888888999999999993 25777889999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCc------cccCCccceeeeccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDG------KPVPGGAIKYTEELYEPGKWDDRPE 224 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g------~p~~~g~i~~~~~~~~~g~wd~~~~ 224 (527) ++||+... ..+...++-+.......++.. + .-.|+.|-......+ ..--.+.|.+...+-.- .+.-+ T Consensus 151 ~~~P~~~~-~~~~~e~a~~~~~~~~~~~~~--~-~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~---~~~lG 223 (522) T protein:vir:47 151 VFFPLESN-TQDVSSAAILTKTIKSEGRKN--V-YYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDV---NDVLG 223 (522) T ss_pred ceEEEEEc-CCceEEEEEEEEEEeecccce--e-EEEEEEEeeecccccccccccccCCceEEEEEEeecCC---CcccC Confidence 99997432 223344443332233222111 1 111222211110000 00002345444321100 00001 Q ss_pred ccccccceeeeccCcccccccccccccceEee----CCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceE Q lcl|Aclame:pro 225 SPLEPDDIKKLSTLTEEEPLPEQITTLPVFHF----RGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY 300 (527) Q Consensus 225 ~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~----pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~ 300 (527) .++....+..+....++..++ .+..+++++| +|....++++|.|.+++.++++|+||.+.|+.++..+.+-..++ T Consensus 224 ~~v~l~~~~e~~~l~~~~~~~-~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~ 302 (522) T protein:vir:47 224 QRVNLSELDKYKNLEPVTVFE-NLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVI 302 (522) T ss_pred ccccccccccccCCCCceEeC-CCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceee Confidence 122222222222112121222 3445566665 55666789999999999999999999999999999999888888 Q ss_pred EeccCCCcCC---CCccc---ceecCCCee----EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccc Q lcl|Aclame:pro 301 ATDSAPPRDS---RGNMV---PWTISPLGM----VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVV 370 (527) Q Consensus 301 ~~~g~~~~d~---~G~~~---p~~v~pg~~----~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~ 370 (527) +....-..+. +|+.. .+......- ...+..++++.+....-.+.|.+.++.+++.|...+++..-.||- T Consensus 303 v~~~~l~~~~~~~~g~~~~~~~fd~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~- 381 (522) T protein:vir:47 303 VPEHLTQRQYQRPDGTIDFRPRFDVEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTF- 381 (522) T ss_pred cchHHhccCCCCCCcccccccccCcccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCc- Confidence 8544332211 22211 111110000 123445567777765567789999999999999999999988883 Q ss_pred cccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHH Q lcl|Aclame:pro 371 DAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQ 450 (527) Q Consensus 371 d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~ 450 (527) +.+...++.+++.+++++++.+.++|..+...++++.+-+. .++ ++-.+..........++|.|+|.++.|++++++. T Consensus 382 ~~~~~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~-~l~-~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~ 459 (522) T protein:vir:47 382 DGQGMKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMC-ELG-KAVGVYSGEIPELDDISVNLDDGVFTDRHAELDY 459 (522) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-hhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHH Confidence 33456678899999999999999999999988888775442 222 3223344444566778999999999999999999 Q ss_pred HHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 451 LLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 451 ~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) .++++++|++|.++++.++ ++.+++++++++++++. |.+.+++..+++.+.+.-.++.+|+.+ T Consensus 460 ~~~~v~aG~~s~e~~i~~~-----~g~~eeea~~el~ri~~----E~~~~~~~~~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 460 WAKMVAAGFSTKKRAIGKT-----LNISGVEAEKELNAINS----ELLPMNDAELAIYGMHDQNEEKADDKG 522 (522) T ss_pred HHHHHhcCCCCHHHHHHhc-----CCCChHHHHHHHHHHHH----hhccCCCCCCCCCCCCCcccccCCCCC Confidence 9999999999999999876 55788889989888864 334455544444442222244444444 No 74 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=99.94 E-value=7.7e-26 Score=158.25 Aligned_cols=433 Identities=11% Similarity=0.050 Sum_probs=248.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChh------heEeeecCCc-----ccccccccCCc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTS------DYQVILRGGD-----EGDQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~------~~~~i~~g~d-----~~~~~~~~~p~ 69 (527) ||- +-..+.-.+...+|.++.|.|-|... .|=.=..+++ ++-++..|.|- T Consensus 1 m~V-------------------~~~hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~ 61 (452) T protein:vir:94 1 MPI-------------------ETKHPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSI 61 (452) T ss_pred CCC-------------------CCcCHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCch Confidence 331 11222444555556666665544311 0100001111 22356677788 Q ss_pred hhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) ++.+|++.++.+ .-.+-.++.+. ... .|..=-+-.+|++-+++.-+.++..|-+...|-|..+ +.||.|..++| T Consensus 62 ~~~t~~~~~G~v-f~k~p~~~~p~-~l~-~~~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~---g~rPy~~~~~~ 135 (452) T protein:vir:94 62 TSKTLSALSGMV-LDQPPVITHPD-AMS-KYFEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLT---GGDPYISVYTT 135 (452) T ss_pred HHHHHHHHhchh-hcCCceecccH-HHH-HHHhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccC---CCceEEEEech Confidence 889999988888 44444444432 222 2221122334889999999999999999999999864 45999999999 Q ss_pred ceEEEEecCCCCCceEEEEEEE--eeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVD--EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~--~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) .++.=- +-+..+.++-|.|-. ...++++. .+.++. ..|+.-...+ |.... ..| .......| T Consensus 136 ~~Ii~W-~~~~~g~l~~v~lre~~~~~d~~d~-f~~~~~--~~yRvL~l~~------g~~~v--~~~-----~~~~~~~~ 198 (452) T protein:vir:94 136 ENILNW-EEDEDGRLLMVVLREFYTVRDTADR-YVQNIR--VRYRCLELVD------GLLQI--TVH-----ETQDGKVW 198 (452) T ss_pred hhhcCc-cccccCCeeEEEEEEEEEEecCCCc-ccceeE--EEEEEEEEeC------CeEEE--EEE-----EccCCcee Confidence 998743 223344444443321 12233222 222221 1121111111 11111 111 11111111 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) +. ......+.-.+++++||+|.+.+...+ ...|.+-|.+|-.|.-+..+.-||.+-|+.++|.|+.+++|... T Consensus 199 ~~------~~~~~~~~~~~~l~~IP~v~~~~~~~~-~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~ 271 (452) T protein:vir:94 199 EL------AKTSTIQNVGVTMDYIPFFCITPSGLS-MTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAES 271 (452) T ss_pred ee------ccceeecCCCcccceeEEEEEcCCCCC-CCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcC Confidence 11 011123456789999999999887544 45689999999999999999999999999999999999999863 Q ss_pred cCCCCcccceecCCCeeEecCC-CCceEEecccc-ChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHH-- Q lcl|Aclame:pro 308 RDSRGNMVPWTISPLGMVEHGQ-NNKIYRVNGVA-SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDL-- 383 (527) Q Consensus 308 ~d~~G~~~p~~v~pg~~~el~~-~~k~~~ld~~~-~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql-- 383 (527) . .++.+|++.+|.+++ +++++.|+-.. .++.+++.|+.|.++|.....- .-.+ ......|+-|..+ T Consensus 272 ~------~~i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~~m~~~Ga~--ll~~--~~~~~~s~ea~~~~~ 341 (452) T protein:vir:94 272 Q------STMHIGSTKAWVIPEVAAKVGFLEFTGQGLQSLEKALSEKQAQLASLSAR--LIDN--STRGSEATETVKLRY 341 (452) T ss_pred C------CceEecccccccCCCCCCcceEEccCchhHHHHHHHHHHHHHHHHHHHHH--hhcc--CCCcchHHHHHHHHH Confidence 2 246799999999996 88998887433 6677899999999998775541 1111 1112335555544 Q ss_pred --HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc Q lcl|Aclame:pro 384 --KLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIP 461 (527) Q Consensus 384 --~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls 461 (527) .-+.|-+.+...+-. +.+++ +++.+|+ +. +. ...+++...-..+....+.++++++++++|.|| T Consensus 342 ~~~~s~L~~~a~~~e~a----l~~~l-~~~a~w~----g~---~~--~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is 407 (452) T protein:vir:94 342 MSETASLKSVTRAVEAL----LNKAY-SCIMDME----SM---GG--TLNIKLNSAFLDSKLTAAELKAWVEAYLSGGIS 407 (452) T ss_pred HHhhHHHHHHHHHHHHH----HHHHH-HHHHHHc----CC---CC--ceEEEeccccccccCCHHHHHHHHHHHhcCCCc Confidence 345555555555543 55554 3445554 33 22 223343322233333468899999999999999 Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc Q lcl|Aclame:pro 462 AKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) Q Consensus 462 ~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d 515 (527) .+|..+.|.+.|=. .++.+...+. ++..+..++..+.-.|+|..- T Consensus 408 ~~t~~~~L~~~gvl-~~~~e~~~i~--------~E~~~~~~~~~~~~~~~~~~~ 452 (452) T protein:vir:94 408 KEIYIHALKVGKVL-PPPGESMGVI--------PDPPAPEPSPSNTPPNPSSKA 452 (452) T ss_pred HHHHHHHHHhCCCC-CCccCHHHHH--------HHhhccCcccCCCCCCCccCC Confidence 99999999886532 2333322221 222222333322222222222 No 75 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=99.92 E-value=4.1e-24 Score=148.82 Aligned_cols=459 Identities=15% Similarity=0.145 Sum_probs=267.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC-----hh-heEeeecCC-----cccccccccCCc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN-----TS-DYQVILRGG-----DEGDQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~-----~~-~~~~i~~g~-----d~~~~~~~~~p~ 69 (527) |+-.. -...+-..+.-.+....|+++.|.|.|. ++ .|=.-..++ .++-++..|.|- T Consensus 1 m~~~~-------------~~~v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~ 67 (513) T protein:vir:97 1 MADKD-------------PKSPATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNM 67 (513) T ss_pred CCCCC-------------CCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCCh Confidence 44321 0112333344455566666666666554 10 110000011 112246678888 Q ss_pred hhHHHHhhhhhhccCccccccCcchhHHHHHHH-HHH---h--cCchhhHHHHhHhhhhcccEEEEEEecCC-------- Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRV-LFD---R--ENWEQKFESLKRWTEIRGDYVLLLIGDDE-------- 135 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~-w~~---~--e~l~~k~~~~~r~a~~~GDav~~i~~d~~-------- 135 (527) .+.+|++.++++ . ...|+... .+-..+.. |.+ . .+|++-++++-+.++.-|=+...|-+... T Consensus 68 ~~~tl~~l~G~v-f--~k~p~~~~-~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~ 143 (513) T protein:vir:97 68 VEQTLDTLSGKP-F--SEPIKLNE-DVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQP 143 (513) T ss_pred HHHHHHHHhhhh-h--hcCcccCc-CchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhH Confidence 899999988888 4 23343322 22223443 433 2 24889999999999999987778876532 Q ss_pred ------CCCccceEEEEEccceEEEE--ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccc Q lcl|Aclame:pro 136 ------KDEGSRLSLHEVDPSTYFPY--EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAI 207 (527) Q Consensus 136 ------k~~~~r~~i~~vdP~~~fp~--~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i 207 (527) |..+.||.|..+.|..|.=- ..-++...++-|-|-..+.++|+.+ .+.+.+.+.+ . .|.+ T Consensus 144 ~T~Ade~~~~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~-~~~~~q~rvL-----~------~g~~ 211 (513) T protein:vir:97 144 RTLADDRREGLRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFA-EVCKRRIRVL-----E------PGLV 211 (513) T ss_pred HhHHHHHhhccCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCc-ceEEEEEEEE-----e------CceE Confidence 33455899999999987443 2223333455554433355555422 2222211121 1 1111 Q ss_pred eeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHH Q lcl|Aclame:pro 208 KYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTD 287 (527) Q Consensus 208 ~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd 287 (527) .. |............+. ..+...++|++||+|.+-+... ...-|.+-|.+|-.|-.+.-+..|| T Consensus 212 ~v---------~r~~~~~~~~~~e~~------~~~~g~~~l~~IP~v~~~~~~~-~~~~~~pPLl~LA~ln~~hy~~~Sd 275 (513) T protein:vir:97 212 QL---------WEPVKKSNAQKEEWA------LADEWATGLNYVPLVTFYADRQ-GFMMGKPPLLDLAHLNVAHWQSASD 275 (513) T ss_pred EE---------EEeecCCCccccceE------EecCCCCcCCceeEEEEecCCC-CCCCCccchHHHHHHHHHHHhhhhh Confidence 11 111101011111111 1234567899999999987743 4555888899999999999999999 Q ss_pred HHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCC-CCceEEeccc-cChHHHHHHHHHHHHHHHHhhcCchh Q lcl|Aclame:pro 288 EDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQ-NNKIYRVNGV-ASLEPSQTHMNKAEEAMQQTKGIPDI 365 (527) Q Consensus 288 ~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~-~~k~~~ld~~-~~la~~~~~~d~L~~~l~~vs~tP~v 365 (527) ..-|+.+++.|+.+++|....+. + ++.+|++.+|.+|+ +++++.|.-. ..++..++.|+.|.++|......+-. T Consensus 276 ~~~il~~~~~P~l~~~G~~~~~~--~--~i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~~~Ga~ll~ 351 (513) T protein:vir:97 276 QRHILTVSRFPILACSGASGEDS--D--PVVVGPNKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMAGYGAEFLK 351 (513) T ss_pred HHHHHHhcccceeeeecCCcCCC--C--ceEeeccccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHHHHHHHHhhc Confidence 99999999999999998754322 2 46799999999996 8999877754 36788899999999999776543321 Q ss_pred hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEE--EeCCCCCCC Q lcl|Aclame:pro 366 AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTI--TFRDPKPVN 443 (527) Q Consensus 366 a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v--~w~d~lP~D 443 (527) ..+.+.|+.+.++..+...|....+-..+...+++++ +++..|| ++.. ....++| -|..... T Consensus 352 -----~~~~~~Ta~a~~~~~~~~~S~L~~~a~~le~al~~~l-~~~a~wl----g~~~----~~~~v~in~dF~~~~~-- 415 (513) T protein:vir:97 352 -----RKTGGQTATARALDSAEATSDLSAMTGLFEDALAQAL-DITADWL----RLGP----NGGTVELVKDYDLEEM-- 415 (513) T ss_pred -----cCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh----CCCC----CccEEEeccccCcccC-- Confidence 2345689999999999888887777766667776666 3445554 3321 1223343 2443332 Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhc----Cccccccc-ccCCCCccc- Q lcl|Aclame:pro 444 NEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAA----DPFGAQMA-AEQGIPDEE- 517 (527) Q Consensus 444 ~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~----d~~g~~~~-~d~g~~d~~- 517 (527) ..+.++++++++++|.||.+|.++.|.+.| .=.++.+.+++.|+++.+- +.+.. |...+... +++|.-+++ T Consensus 416 ~~~~~~al~~a~~~G~is~~t~~~~L~r~g-vl~~d~d~~~~~e~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 492 (513) T protein:vir:97 416 DAPGLQALQVAREKRDISRKTYLNGLRLRG-VLPEDFDEDEDWEELMEEI--SEAMGRAGLDLDPAQKNPPEGGEGEGEG 492 (513) T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHhcc-CCCccCCHHHHHHHHHHhh--hhccCCCCccccccCCCCCCCCCCCCCC Confidence 267889999999999999999999997754 3333434444445554431 11221 11111111 222221111 Q ss_pred ccccCCCCCC Q lcl|Aclame:pro 518 DDQALNGQPL 527 (527) Q Consensus 518 ~~~~~~~~~~ 527 (527) ..+..-+.|+ T Consensus 493 ~~~~~~~~~~ 502 (513) T protein:vir:97 493 EGEGGEGGEG 502 (513) T ss_pred CCCCCCCCCc Confidence 2222223333 No 76 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=99.90 E-value=3.9e-22 Score=137.96 Aligned_cols=456 Identities=13% Similarity=0.120 Sum_probs=253.2 Q ss_pred CC---CChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCCh------hheEeeecCCc----------ccc Q lcl|Aclame:pro 1 MG---QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNT------SDYQVILRGGD----------EGD 61 (527) Q Consensus 1 m~---~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~------~~~~~i~~g~d----------~~~ 61 (527) || +-|..|. +....+.++.|.+-|.. +.|=.-..+++ ++- T Consensus 1 m~~V~~~hp~y~---------------------~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl 59 (501) T protein:vir:95 1 MPNVSFIRPELG---------------------KLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYL 59 (501) T ss_pred CCCCCCCCHHHH---------------------HHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHh Confidence 55 3333444 34444444444444331 01111000110 112 Q ss_pred cccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhc-----CchhhHHHHhHhhhhcccEEEEEEecCCC Q lcl|Aclame:pro 62 QRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRE-----NWEQKFESLKRWTEIRGDYVLLLIGDDEK 136 (527) Q Consensus 62 ~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e-----~l~~k~~~~~r~a~~~GDav~~i~~d~~k 136 (527) ++..|.|-++..|++.++.+ . ...+... +-..|..|.+.. .|++-++++-+.++.-|=+...|-+.... T Consensus 60 ~rA~~~n~~~~t~~~l~G~v-f--~k~p~~~---~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~ 133 (501) T protein:vir:95 60 KRAVFYNVARRTLFGLVGQV-F--MRDPVVK---VPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTE 133 (501) T ss_pred hccccCchHHHHHHHHhhhh-h--cCCccee---CcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCC Confidence 45567788888888888777 3 2333332 234566666544 58899999999999999888888775332 Q ss_pred -----------CCccceEEEEEccceE--EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccC Q lcl|Aclame:pro 137 -----------DEGSRLSLHEVDPSTY--FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVP 203 (527) Q Consensus 137 -----------~~~~r~~i~~vdP~~~--fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~ 203 (527) ..+.||.|..+.|.++ |-...-++..+++-|-|-..+..+++.=-.+.+...+.. ....+| T Consensus 134 ~~~~~t~a~~~~~~~rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL--~~~~~g---- 207 (501) T protein:vir:95 134 AEGGASIADLEAGRIRPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVL--RLDEEG---- 207 (501) T ss_pred CcccccHHHHHhccCCcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEE--eeCCCc---- Confidence 2233899999999998 333444444556666555445555542111111111111 011111 Q ss_pred CccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHh Q lcl|Aclame:pro 204 GGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQ 283 (527) Q Consensus 204 ~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~ 283 (527) ...++ -|+-..|.-.....+..........-...+.--+++++||+|.+.... ....-|.+-|.+|-.+--+.-+ T Consensus 208 --~~~~~--v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~-~~~~~~~pPLl~lA~lni~hy~ 282 (501) T protein:vir:95 208 --YYVHE--IWREPQPTKADGSKIPKGNYQQYVVYKPTDAQGKRLTEIPFMFIGSEN-NDSNPDNPNFYDLASLNMAHYR 282 (501) T ss_pred --eEEEE--EEEecCCcccCcceecCCcccccceeeeeccCCCcCCeeeEEEEecCC-CCCCCCccchHHHHHHHHHHHh Confidence 11111 121111100000000000000000000012234789999999875542 2333356778888888888889 Q ss_pred hHHHHHHHHHHhCCceEEeccCCCcC-CCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHh-hc Q lcl|Aclame:pro 284 TMTDEDLIMVFGGLGFYATDSAPPRD-SRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQT-KG 361 (527) Q Consensus 284 ~lsd~~~i~~~~g~P~~~~~g~~~~d-~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~v-s~ 361 (527) .-+|..-++.+.+.|+.+++|..... ..++..++.+|++..|.+|++++++.|.- ..-+-.++.|+.+.++|... ++ T Consensus 283 ~ssd~~~~l~~~~~P~l~i~G~~~~~~~~~~~~~i~~G~~~~~~lP~~~~~~~ie~-~~~~i~~~~l~~l~~~m~~~Ga~ 361 (501) T protein:vir:95 283 NSADYEESCYIVGQPTPVLIGLTEEWVTNVLKGSVNFGSRGGIPLPVGADAKLLQA-SENTMLKEAMDTKERQMVALGAK 361 (501) T ss_pred hhhHHHHHHHHcccceeeeeCCcccccccCCCCceeecccccccCCCCCceeEEec-ChhhHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999987643 24455678999999999999999999983 33333478899999888775 33 Q ss_pred CchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCC Q lcl|Aclame:pro 362 IPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKP 441 (527) Q Consensus 362 tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP 441 (527) +.. ..+.+.|+.+.++..+.-.|....+-..+...+.+++ +++.+|+ ++. +....++| ..+..+ T Consensus 362 ll~------~~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l-~~~a~w~----g~~----~~~~~v~i-~~df~~ 425 (501) T protein:vir:95 362 LVE------QKEVQRTATEAELEAASEGSTLSSATKNVSAAFEWAL-KWAARWV----GQA----DSGVKFEL-NTDFDI 425 (501) T ss_pred hcc------CCccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHc----CCC----CCceEEEE-eccccc Confidence 321 1124467888887776555544444333344455554 2444554 332 12223443 233333 Q ss_pred CC-HHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH----HhcCcccccccccC-CCCc Q lcl|Aclame:pro 442 VN-NEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQA----EAADPFGAQMAAEQ-GIPD 515 (527) Q Consensus 442 ~D-~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~----aa~d~~g~~~~~d~-g~~d 515 (527) .+ ..+.++++++++++|.||.+|.++.|.+.| ....+...+.|+|+.. .++. +.++..+...+||+ |+-| T Consensus 426 ~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~---v~~~~~~~e~e~i~~~-~~~~~~~~~~~~~~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 426 ARMTPDERRSLVEEWQKGAITFEEMRTGLRKAG---VATEDDSKAKEKIAKD-TAEAMALATPANVPGDGSGGDNVGNSE 501 (501) T ss_pred ccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCC---CCChhHHHHHHHHHhh-hcCcccccccCCCCCCCcccccccCCC Confidence 22 367789999999999999999999997764 5555555555665531 1221 22222222222222 2222 No 77 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=99.89 E-value=4.5e-22 Score=137.59 Aligned_cols=482 Identities=12% Similarity=0.045 Sum_probs=255.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChh------heEeeecCCc----------cccccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTS------DYQVILRGGD----------EGDQRP 64 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~------~~~~i~~g~d----------~~~~~~ 64 (527) -...|-|- ++.++|.=--.+-+-..+.=.+....+.++.|.+.|... .|=.-..+++ ++-++. T Consensus 15 ~~~~~~~~-~~~~~~~~~m~dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA 93 (535) T protein:vir:80 15 KVLIPPQA-PPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRA 93 (535) T ss_pred hcccCCCC-cCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCCCCCcccCCcCCHHHHHHHHhhc Confidence 11111111 144444322221112334556666667777766665411 1111111111 122456 Q ss_pred ccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhc-----CchhhHHHHhHhhhhcccEEEEEEecCC---- Q lcl|Aclame:pro 65 IYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRE-----NWEQKFESLKRWTEIRGDYVLLLIGDDE---- 135 (527) Q Consensus 65 ~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e-----~l~~k~~~~~r~a~~~GDav~~i~~d~~---- 135 (527) .|.|-++.+|++.++.+ +-.+-.++. -..|..|.+.. .|++-++++-+.++.-|=+...|-+... T Consensus 94 ~~~n~~~~tl~~l~G~v-frk~p~~~~-----p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~ 167 (535) T protein:vir:80 94 IFYNVTARTLDGMMGQV-FSRDPIRQL-----PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPV 167 (535) T ss_pred cCCChhHHHHHHHhchh-hcCCcceec-----cHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcc Confidence 77888888998888887 333323332 24566676543 5889999999999999988888887543 Q ss_pred -----CCCccceEEEEEccceEEEE--ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeee-eecCCccccCCccc Q lcl|Aclame:pro 136 -----KDEGSRLSLHEVDPSTYFPY--EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMK-TLDDDGKPVPGGAI 207 (527) Q Consensus 136 -----k~~~~r~~i~~vdP~~~fp~--~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~-~~~~~g~p~~~g~i 207 (527) +..+.||.|..+.|..+.=- ..-++.++++-|-|-..+...++. ...+...+ |+. +.+.+| . T Consensus 168 t~ade~~~~~rPy~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~-f~~~~~~q--~RvL~~~~~G------~- 237 (535) T protein:vir:80 168 TVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDG-FETTYVQQ--WRVLQLNAEG------N- 237 (535) T ss_pred cHHHHHhcCCCcEEEEechhhccCccccccCCccceeEEEEEEEEEecCCC-cccceeEE--EEEEEecCCc------e- Confidence 22255899999999987553 222334456656544334333332 12222111 110 111112 1 Q ss_pred eeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHH Q lcl|Aclame:pro 208 KYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTD 287 (527) Q Consensus 208 ~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd 287 (527) ++... |..+..... ......--..+.--+++++||+|.+.+.. .....|.+-|.+|-.+--+..+.-+| T Consensus 238 -y~v~~-----~~~~~~~~~----~~~~~~~~~~~~g~~~l~~IPfv~~~~~~-~~~~~~~pPLl~LA~lni~Hy~~ssd 306 (535) T protein:vir:80 238 -YQVER-----WRRETQEEM----YYSYSKHVPTDGNGNPFKEIPFQFIGPLD-NNADIDHPPLLDLCEVNIGHYRNSAD 306 (535) T ss_pred -EEEEE-----EEeecCCcc----ccccceeecccCCCcccCeeEEEEeecCC-CCCCCCccchHHHHHHHHHHhhchhH Confidence 11112 221111000 00000000012234789999999886553 35567888899999999999999999 Q ss_pred HHHHHHHhCCceEEeccCCCcCC--CCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCch- Q lcl|Aclame:pro 288 EDLIMVFGGLGFYATDSAPPRDS--RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD- 364 (527) Q Consensus 288 ~~~i~~~~g~P~~~~~g~~~~d~--~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~- 364 (527) ..-|+.+.+.|+.+++|+...+. -.+..++.+|++.+|.+|+++.+..+.-. .-+..++.|+.+.++|.......- T Consensus 307 ~~~il~~~~~P~l~i~G~~~~~~~~~~~~~~i~iG~~~~~~lP~~~~~~~~e~~-~~~~a~~~l~~~e~qM~~lGa~ll~ 385 (535) T protein:vir:80 307 YEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQIT-PNSVPFEAMTHKESQMIAMGANLLV 385 (535) T ss_pred HHHHHHHhcCceeeeecCchhhhhcCCCCcceEecCcccccCCCCCCcceeeec-cchhHHHHHHHHHHHHHHHHHHhhc Confidence 99999999999999999875432 22345688999999999999999777643 334446788888887776432221 Q ss_pred hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCH Q lcl|Aclame:pro 365 IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNN 444 (527) Q Consensus 365 va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~ 444 (527) ...| .-|...+-+.-+-..+.|=+.+...+ ..+.++++ ++.+|+ +....+....+.+.--|... .-. T Consensus 386 ~~~~--~~Ta~~a~~~~~~~~S~L~~~a~~le----~al~~aL~-~~A~w~----G~~~~~~~~~i~~n~dF~~~--~ld 452 (535) T protein:vir:80 386 KSGG--NRTFGEAQQEEASEQSILSACTKNVS----MAFRKALR-WANQFQ----TGIVNDETVEYNLNTDFPAA--RLT 452 (535) T ss_pred cCcc--cccHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHH-HHHHHc----CCccCCCceEEEeccccccc--cCC Confidence 1122 22211111111122233323333333 33445443 444453 33222221112222223322 213 Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-cccccccCC Q lcl|Aclame:pro 445 EKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DEEDDQALN 523 (527) Q Consensus 445 ~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~~~~~~~~ 523 (527) .+.++++++++++|.||.+|.++.|.+.|=.. +..+.+++.+++..+-.+....+..... .+.+|.+ ...++.+++ T Consensus 453 ~~~~~all~~~~~G~Is~et~~~~L~r~gvl~-~~~~~eee~~ri~~E~~~~~~~~g~~~d--~~~~g~~~~~~~~~~~~ 529 (535) T protein:vir:80 453 PNERAELILEWQQGAITFKEMRAGLRRAGVAS-EDDAKAETEGKATVEFIAKTAAAGKVGD--AASGGTNKAKLNNGNGG 529 (535) T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC-cccchHHHHHHHHhhhhhccccCCCCCC--CCCCCCCcCcccCCccc Confidence 56889999999999999999999997775333 3333334444444322222222222111 2333443 444444444 Q ss_pred CCCC Q lcl|Aclame:pro 524 GQPL 527 (527) Q Consensus 524 ~~~~ 527 (527) +.+- T Consensus 530 ~~~~ 533 (535) T protein:vir:80 530 GNQA 533 (535) T ss_pred cccC Confidence 4444 No 78 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.85 E-value=4.5e-20 Score=126.66 Aligned_cols=428 Identities=14% Similarity=0.069 Sum_probs=236.2 Q ss_pred CCC---------------------ChhhhhhhhHHhhcccCCCCCCChH-----HHHHHHHHHHHHHHhcCChhheEeee Q lcl|Aclame:pro 1 MGQ---------------------DKRQYGSTQQLRAGEANFPNAVTDF-----DKARLASYRLYEDMYLTNTSDYQVIL 54 (527) Q Consensus 1 m~~---------------------~~~qy~~~~~~~~~~~~~~~~v~~~-----d~~Rl~aY~~~~~~y~~~~~~~~~i~ 54 (527) |.. -.+-|++++.-. +...++..-+++ +..+|++ ..-+.|.|+ T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r-~~~~~~~~~s~~~~~~~~~~~lr~--RaRdl~rNn-------- 69 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTR-THKARRENRTADQLSQYGAVSLRE--QARYLDNNH-------- 69 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCccc-ccCCCCCCCChHHHHHHHHHHHHH--HHHHHHhcC-------- Confidence 110 012356555433 222223332322 1222222 234555555 Q ss_pred cCCcccccccccCCchhHHHHhhhhhhccCcc-cc----ccCc--------chhHHHHHHHHHHhcCc------hhhHHH Q lcl|Aclame:pro 55 RGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLK-WE----FSKK--------DAKVDDAIRVLFDRENW------EQKFES 115 (527) Q Consensus 55 ~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~-~~----i~~~--------~~~v~~~lr~w~~~e~l------~~k~~~ 115 (527) |-++.+|++..+.. +|.+ .. +... +..+++.|+.|.+.|+. ...... T Consensus 70 -------------~~a~~av~~~~~nv-VG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l 135 (502) T protein:vir:79 70 -------------DLVIGVFDKLEERV-VGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERL 135 (502) T ss_pred -------------hHHHHHHHHHHHhh-ccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHH Confidence 23778888877777 6653 22 2222 24467788889986543 333445 Q ss_pred HhHhhhhcccEEEEEEecCCC----CCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeee Q lcl|Aclame:pro 116 LKRWTEIRGDYVLLLIGDDEK----DEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKY 191 (527) Q Consensus 116 ~~r~a~~~GDav~~i~~d~~k----~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~ 191 (527) +.|.-++-|+.+-+++|++.+ +...-..|..++|..+- ....++..=..|| T Consensus 136 ~~r~~~~dGE~f~~~~~~~~~~~~~g~~~~l~lq~iepd~l~-~~~~~~~~i~~GV------------------------ 190 (502) T protein:vir:79 136 MLRTWLRDGEVFAQMVSGRINSLTPSAGVHFWLEALEPDFIP-MTSDESNRLNQGV------------------------ 190 (502) T ss_pred HHHHHHhCCceEEEEeecccCccCCCcccceEEEEecchhcC-CCCCCCCeeEeee------------------------ Confidence 778888899999999998743 11122355668887762 1111111112222 Q ss_pred eeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccc---eEeeCCCCCCCCccCC Q lcl|Aclame:pro 192 MKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLP---VFHFRGHPIMNAMFGR 268 (527) Q Consensus 192 ~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iP---VV~~pN~~~~~~~wG~ 268 (527) +++.+|.|++ |....-+++++.. .....|| |+|+-+..+++...|. T Consensus 191 --e~d~~Gr~~a-----Y~i~~~hPgd~~~------------------------~~~~rvpA~~vlH~f~~~r~gQ~RGi 239 (502) T protein:vir:79 191 --FVDDWGRPEK-----YLVYKSRPVSGRQ------------------------METKEVDAERMLHLKFVRRLHQMRGT 239 (502) T ss_pred --EECCCCceEE-----EEEeecCCCCCcc------------------------cceeEechhheEEeecccCCccccCC Confidence 1222222211 1111111211100 0001223 8999888889999999 Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe-ccCCC-c-----CCCCcccceecCCCeeEe-cCCCCceEEecccc Q lcl|Aclame:pro 269 SGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT-DSAPP-R-----DSRGNMVPWTISPLGMVE-HGQNNKIYRVNGVA 340 (527) Q Consensus 269 S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~-~g~~~-~-----d~~G~~~p~~v~pg~~~e-l~~~~k~~~ld~~~ 340 (527) |.|+.++..+..|.+-..-+-......+.-...+ +.... . +.........+.||+|+. |.++-++..++... T Consensus 240 s~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~ 319 (502) T protein:vir:79 240 SLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDR 319 (502) T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccccccCCCCCccccccccCCccccccCCCceeeeeCCCC Confidence 9999999999999655544433333444443333 32211 1 111122345688999876 89999999999766 Q ss_pred ChHHHHHHHHHHHHHHHHhhcCch-hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh Q lcl|Aclame:pro 341 SLEPSQTHMNKAEEAMQQTKGIPD-IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYE 419 (527) Q Consensus 341 ~la~~~~~~d~L~~~l~~vs~tP~-va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e 419 (527) ..+.|.+++..+++.|....++|- +..| |- ++ |-.+.+..+.+.-..+++.|..+...+-| -+-.+||...- T Consensus 320 p~~~~~~f~~~~lr~iaaglGi~ye~lt~--D~-s~-nySs~R~~~~e~~r~~~~~q~~~~~~~~~---pi~~~~l~~a~ 392 (502) T protein:vir:79 320 PNPNLETFRNGQLRAVAAGSRLSFSSTAR--NY-NG-TYSAQRQELVESTDGYLILQDWFIGAVTR---PMYRAWLKQAV 392 (502) T ss_pred CCCCHHHHHHHHHHHHHhhcCCCHHHHhc--cc-cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH Confidence 778999999999999999999996 5555 53 44 88899999988888888877655543323 22333332211 Q ss_pred --hhcc--cccccceeEEEEeCCCC-C-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH Q lcl|Aclame:pro 420 --GVGI--DDADKKLTVTITFRDPK-P-VNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQG 493 (527) Q Consensus 420 --~v~~--~~~~~~~~v~v~w~d~l-P-~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a 493 (527) +... .......++.|.|-.|- + .|..++++..++++.+|+.|+++.+++. |.+| ++.++++.++.+.. T Consensus 393 l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~----G~D~-~~v~~q~a~e~~~~- 466 (502) T protein:vir:79 393 ASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAG----GRNP-DDVKRRRKAEIDEN- 466 (502) T ss_pred HcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc----CCCH-HHHHHHHHHHHHHH- Confidence 1110 11123456678884433 3 6999999999999999999999988865 4344 44444443333322 Q ss_pred HHHHHhc---Cc----ccccccccCCCCcccccccCC Q lcl|Aclame:pro 494 IAQAEAA---DP----FGAQMAAEQGIPDEEDDQALN 523 (527) Q Consensus 494 ~~~~aa~---d~----~g~~~~~d~g~~d~~~~~~~~ 523 (527) ++.-+. || .+.+..++...|...+++.+- T Consensus 467 -~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 467 -RKLDLVFDTDPASDKGGSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred -HHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 111111 11 111222222222222222222 No 79 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=99.82 E-value=2.3e-18 Score=117.26 Aligned_cols=455 Identities=12% Similarity=0.061 Sum_probs=262.6 Q ss_pred hhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheE-----eee-cCCc-----ccccccccCCchhHHHHh Q lcl|Aclame:pro 8 YGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQ-----VIL-RGGD-----EGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 8 y~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~-----~i~-~g~d-----~~~~~~~~~p~~~k~v~~ 76 (527) .-++ .|..+.-+-..+.=.+....|.++.|.|.|...... .=+ +..+ ++-++..|.|-.+.+|++ T Consensus 1 ~~~~----~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~ 76 (489) T protein:vir:78 1 MLTE----NGQGSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSG 76 (489) T ss_pred CccC----CCccCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHHHHHH Confidence 1111 155554466667788888888898888888421111 000 1111 122455667777888888 Q ss_pred hhhhhccCccccccCcchhHHHHHHHHHHh-----cCchhhHHHHhHhhhhcccEEEEEEecCCC--------CCccceE Q lcl|Aclame:pro 77 KMRFLGQGLKWEFSKKDAKVDDAIRVLFDR-----ENWEQKFESLKRWTEIRGDYVLLLIGDDEK--------DEGSRLS 143 (527) Q Consensus 77 ~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~-----e~l~~k~~~~~r~a~~~GDav~~i~~d~~k--------~~~~r~~ 143 (527) .++.+ .-.+-.++. -..|..|.+. .+|++-+.+.-+.++.-|=+...|-+..+- ..+.||. T Consensus 77 l~G~v-frk~p~~~~-----p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rPy 150 (489) T protein:vir:78 77 MVGSV-MRKEPEINI-----PKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNPT 150 (489) T ss_pred Hhchh-hcCCcceec-----cHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCcE Confidence 77777 322223332 2345556652 237888999999999999998888886432 2345999 Q ss_pred EEEEccceEEEE--ecCCCCCceEEEEEEEe--eeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPY--EDPRYPGQVLGVYLVDE--YPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKW 219 (527) Q Consensus 144 i~~vdP~~~fp~--~d~d~~~~v~~vh~a~~--~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~w 219 (527) |..+.|..+.=- ..-++..+++-|-|... ..+|++.--.+.+.+.+.+ +.+.+|.. ..+ .|+-. T Consensus 151 ~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL--~~~~~g~~------~~~--~~r~~-- 218 (489) T protein:vir:78 151 IAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVL--DIDSDGNY------RQR--LFRFD-- 218 (489) T ss_pred EEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEE--ecCCCcce------EEE--EEEee-- Confidence 999999997443 22233445655544332 2234333222222222122 11112211 011 11000 Q ss_pred cccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCce Q lcl|Aclame:pro 220 DDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGF 299 (527) Q Consensus 220 d~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~ 299 (527) .++..+.. .... ..+.--+++++||+|.+-.... ...-|.+-|.+|-.|--+.-+.-+|..-|+.+.+.|+ T Consensus 219 --~~g~~~~~-~~~~-----~~~~g~~~l~~IPfv~~~~~~~-~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~ 289 (489) T protein:vir:78 219 --AEGGAQED-VVEI-----YPDLGESLRGVIPFTFIGATNN-DATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPT 289 (489) T ss_pred --cCCcccce-eeEE-----eccCCCCccCeeeEEEEecCCC-CCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccce Confidence 00000000 0000 0012246788999999876533 2333677799999999999999999999999999999 Q ss_pred EEeccCCCcC----CCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHH-hhcCchhhcccccccc Q lcl|Aclame:pro 300 YATDSAPPRD----SRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQ-TKGIPDIAVGVVDAAV 374 (527) Q Consensus 300 ~~~~g~~~~d----~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~-vs~tP~va~G~~d~s~ 374 (527) .+++|....+ .-|+...+.+|++..|.+|+++.+..+.-. .-+..++.|+.+.+++.. .+++.. .++ T Consensus 290 l~i~G~d~~~~~~~~~~~~~~i~~g~~~~~~lp~~~~~~~ie~~-~~~~~r~~l~~le~qm~~lGa~l~~-------~~~ 361 (489) T protein:vir:78 290 LFIYPGENLTPQAFKEANPNGIKFGSRRGHNLGYGGSAQLIQAG-ENNLARQNMLDKEQQAIQIGAQLIT-------PTQ 361 (489) T ss_pred eeeecCccCCcccccccCccceeeCCcccccCCCCCCcceeccC-cchHHHHHHHHHHHHHHHHhhhhcc-------CCc Confidence 9999876332 255666788999999999999999888743 334458999999988877 355542 234 Q ss_pred cccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 375 AESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLEL 454 (527) Q Consensus 375 a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l 454 (527) +.|+.+.++..+.-.|....+-..+...+.+++ +++.+|+ ++. .+....+.+...|.. .+.| .+.+++.+++ T Consensus 362 ~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l-~~~a~w~----G~~-~~~~~~i~~n~dF~~-~~~d-~~~~~al~~~ 433 (489) T protein:vir:78 362 QITAQSARIQRGADTSVMATIARNVSQAYTDAL-RWVAVML----GKP-EDTEVEFRLNMDFFL-EPMT-AQDRAAWMAD 433 (489) T ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHc----CCC-CCCceEEEeecccCc-ccCC-HHHHHHHHHH Confidence 577777777776555544444444444455554 3344443 331 111122333334543 2334 6688899999 Q ss_pred HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-ccccccc Q lcl|Aclame:pro 455 WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DEEDDQA 521 (527) Q Consensus 455 ~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~~~~~~ 521 (527) +++|.||.+|..+.|.+.| ..+...+++.++++.+ ..+.|.+ .++=+| ..+.+++ T Consensus 434 ~~~G~is~~t~~~~L~~~g---v~d~~~e~~~~ei~~~-------~~~~~~~--~~g~~~~~~q~~~~ 489 (489) T protein:vir:78 434 INAGLLPATAYYAALRKAG---VTDWTDADIKDAVADQ-------PLPVATE--VQGEIPQSAQQQEK 489 (489) T ss_pred HhcCCCCHHHHHHHHHhCC---CCCccHHHHHHHHhhc-------CCCcccC--CcccCCCCcccccC Confidence 9999999999999998764 2223334444444321 1223322 222233 2333333 No 80 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=99.82 E-value=2.3e-18 Score=117.30 Aligned_cols=457 Identities=12% Similarity=0.040 Sum_probs=266.9 Q ss_pred hhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChh-----heEeee-cCCcc-----cccccccCCchhHHHHh Q lcl|Aclame:pro 8 YGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTS-----DYQVIL-RGGDE-----GDQRPIYVPNGEKLIEA 76 (527) Q Consensus 8 y~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~-----~~~~i~-~g~d~-----~~~~~~~~p~~~k~v~~ 76 (527) .-++ .|..+.-+-..+.=.+....|+++.|.|.|... .+..=+ +..++ +-++..|.|-.+.+|++ T Consensus 1 ~~~~----~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~ 76 (491) T protein:vir:95 1 MLTA----NGQGSGVKTKHREWLHYAPKWQKVRHALAGDLVGYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSG 76 (491) T ss_pred Cccc----CCccCCCCccCHHHHHHHHHHHHHHHHhcCcchhhcccCCCcCCCCCCCHHHHHHHHhcccCCChHHHHHHH Confidence 1111 155554466667788888888888888887421 111100 11211 22456777778888888 Q ss_pred hhhhhccCccccccCcchhHHHHHHHHHHh-----cCchhhHHHHhHhhhhcccEEEEEEecCCC--------CCccceE Q lcl|Aclame:pro 77 KMRFLGQGLKWEFSKKDAKVDDAIRVLFDR-----ENWEQKFESLKRWTEIRGDYVLLLIGDDEK--------DEGSRLS 143 (527) Q Consensus 77 ~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~-----e~l~~k~~~~~r~a~~~GDav~~i~~d~~k--------~~~~r~~ 143 (527) .++.+ .-.+-.++.+ ..|..|.+. .+|++-+++.-+.++.-|=+...|-+...- ..+.||. T Consensus 77 l~G~v-frk~p~~~~p-----~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~Ade~~~~~rPy 150 (491) T protein:vir:95 77 MVGSV-MRKEPEINIP-----KELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETAAATAAEQNAGLLNPT 150 (491) T ss_pred Hhchh-hcCCceeecc-----HHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCcccCHHHHHHhcCCcE Confidence 77777 4333333332 235555552 337888999999999999988888886442 2355899 Q ss_pred EEEEccceEEEE--ecCCCCCceEEEEEEEe--eeCCCCccceeeee-eeeeeeeeecCCccccCCccceeeeccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPY--EDPRYPGQVLGVYLVDE--YPHPDSEKKNEKCA-RVQKYMKTLDDDGKPVPGGAIKYTEELYEPGK 218 (527) Q Consensus 144 i~~vdP~~~fp~--~d~d~~~~v~~vh~a~~--~~~pd~~~~~~k~~-rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~ 218 (527) |..+.|..+.=- ..-++.++++-|-|... ..+|++.--.+.+. +| .+ +.+.+| ....+..+....+ T Consensus 151 ~~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyR-vL--~l~~~g------~~~~~v~r~~~~g 221 (491) T protein:vir:95 151 IAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYR-VL--DIDTDG------NYRQRLFRFDAEG 221 (491) T ss_pred EEEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEE-EE--eecCCC------ceEEEEEEEcCCC Confidence 999999997432 22334445655554432 23333321111111 11 11 011122 1111111111111 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) |.... ...+. .+.--+++++||+|.+-.... ...-|.+-|.+|-.|--+.-+.-+|..-|+.+.+.| T Consensus 222 ~~~~~--------~~~~~----~~~g~~~l~~IPfv~~~~~~~-~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P 288 (491) T protein:vir:95 222 GAQEE--------VVEIY----PDLGESLRGVIPFTFIGATNN-DATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQP 288 (491) T ss_pred cceee--------eeeee----ecCCCcccCeeEEEEEecCCC-CCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccc Confidence 11000 00000 011134788999999876532 233367779999999999999999999999999999 Q ss_pred eEEeccCCCcC----CCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHh-hcCchhhccccccc Q lcl|Aclame:pro 299 FYATDSAPPRD----SRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQT-KGIPDIAVGVVDAA 373 (527) Q Consensus 299 ~~~~~g~~~~d----~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~v-s~tP~va~G~~d~s 373 (527) +.+++|....+ .-+++..+.+|++..|.+|+++.+..+.- +..+..++.|+.+.+++... +++- ..+ T Consensus 289 ~l~~~G~d~~~~~~~~~~~~~~i~~g~~~~~~lP~~~~~~~ie~-~~~~~~~~~l~~~e~qm~~~Ga~l~-------~~~ 360 (491) T protein:vir:95 289 TLFIYPGDNLTPQSFKEANPNGIKFGSRCGHNLGYGGSAQLIQA-GENNLARQNMLDKEQQAIQIGAQLI-------TPS 360 (491) T ss_pred eeeeecCcccCcchhhccCcceeEecCcCCcCCCCCCccceeec-CcchHHHHHHHHHHHHHHHHHHHhc-------cCC Confidence 99998866322 24455668899999999999999999984 33344588899888877664 5542 233 Q ss_pred ccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 374 VAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLE 453 (527) Q Consensus 374 ~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~ 453 (527) .+.|+.+.++..+.-.|....+-..+...+.+++ +++.+|+ ++. .+....+.+...|... +.| .+.+++.++ T Consensus 361 ~~~Ta~~~~~~~~~~~S~L~~~a~~~e~al~~~l-~~~a~w~----G~~-~~~~v~i~~n~dF~~~-~~~-~~~~~all~ 432 (491) T protein:vir:95 361 QQITAESARIQRGADTSVMATIARNVSQAYTDAL-RWVAMML----GKP-EDSEVEFQLNMDFFLQ-PMT-AQDRAAWMA 432 (491) T ss_pred cchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHc----CCC-CCCceEEEeecccccc-cCC-HHHHHHHHH Confidence 4578888888777555554444444444555554 3444553 321 1112223333345433 334 557899999 Q ss_pred HHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 454 LWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 454 l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) ++++|.||.++..+.|.+.| ..+.+++++.++|... ..+.|..+..-+-+|+.+.-.++ T Consensus 433 ~~~~G~is~~t~~~~L~~~~---vl~~~~e~~~~~ie~~-------~~~~~~~~~~~~~~~~~~~~~~~ 491 (491) T protein:vir:95 433 DINAGLLPATAYYAALRKAG---VTDWTDEDILNAIEDA-------PLPSGAVTQVAGEIPQAAQQQQE 491 (491) T ss_pred HHhcCCCCHHHHHHHHHhCC---CCCccHHHHHHHHHhc-------CCCCCccccccccchhhhhhccC Confidence 99999999999999997764 3445555555555322 23334443322233444333333 No 81 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.80 E-value=1.7e-18 Score=118.01 Aligned_cols=441 Identities=12% Similarity=0.023 Sum_probs=243.8 Q ss_pred CCCC---------------------hhhhhhhhHHhhcccCCCCCCChHHH---HHHHHHHHHHHHhcCChhheEeeecC Q lcl|Aclame:pro 1 MGQD---------------------KRQYGSTQQLRAGEANFPNAVTDFDK---ARLASYRLYEDMYLTNTSDYQVILRG 56 (527) Q Consensus 1 m~~~---------------------~~qy~~~~~~~~~~~~~~~~v~~~d~---~Rl~aY~~~~~~y~~~~~~~~~i~~g 56 (527) |... .+-|+++.+= .+...++...+++.. .|-..-...-+.+.|++ T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~-r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~--------- 70 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPG-RTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHD--------- 70 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCcc-ccccccCCCCChHHHHHHHHHHHHHHHHHHHhcCh--------- Confidence 2111 1235555432 122222222222111 12223335566676662 Q ss_pred CcccccccccCCchhHHHHhhhhhhccCc---ccc--ccCc--------chhHHHHHHHHHHhcC------chhhHHHHh Q lcl|Aclame:pro 57 GDEGDQRPIYVPNGEKLIEAKMRFLGQGL---KWE--FSKK--------DAKVDDAIRVLFDREN------WEQKFESLK 117 (527) Q Consensus 57 ~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~---~~~--i~~~--------~~~v~~~lr~w~~~e~------l~~k~~~~~ 117 (527) -++.+|++....+ ||. .-. +-.. ++.+++.|+.|.++++ +......+. T Consensus 71 ------------~a~~av~~~~~nv-VG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~ 137 (548) T protein:vir:95 71 ------------LVTGLLDRLEERV-VGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMC 137 (548) T ss_pred ------------HHHHHHHHHHHhc-cCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHH Confidence 2667777766666 543 111 1111 2346778899998665 444445578 Q ss_pred HhhhhcccEEEEEEecCCCCC--c--cceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeee Q lcl|Aclame:pro 118 RWTEIRGDYVLLLIGDDEKDE--G--SRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMK 193 (527) Q Consensus 118 r~a~~~GDav~~i~~d~~k~~--~--~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~ 193 (527) |..++-|+.+.+++|++.... | .=..|..++|..+--....++..-+.||- + + .++..++|.+- T Consensus 138 R~~~~dGE~f~~~~~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE----~-D----~~Grp~aY~i~--- 205 (548) T protein:vir:95 138 RTWLRDGEGLAQKLMGRVPNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIE----R-D----TWRRKRAYHLL--- 205 (548) T ss_pred HHHHhCCceEEEeeecccccccCCcccceEEEEechhhcCCCCCCCCCceeeeeE----E-C----CCCceEEEEEe--- Confidence 888999999999999976532 1 11245678888873221111111123331 1 0 11222222211 Q ss_pred eecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccc Q lcl|Aclame:pro 194 TLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAG 273 (527) Q Consensus 194 ~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Led 273 (527) .-++|+|...... .. ++ ++| --=|+|+-...+++...|.|.|+. T Consensus 206 -------------------~~hPgd~~~~~~~-~~---~~---------rvp----A~~VlHif~~~r~gQ~RGvs~lap 249 (548) T protein:vir:95 206 -------------------KDHPGNLQTLGGS-LA---VK---------RVE----AERIIHIAYRKRIGQNRGVPMLHA 249 (548) T ss_pred -------------------ecCCCcccccccc-cc---ee---------eec----hhHheecccccCCccccCcchHHH Confidence 1122222110000 00 00 011 112788888778999999999999 Q ss_pred hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc-------CCCCcccceecCCCeeEe-cCCCCceEEeccccChHHH Q lcl|Aclame:pro 274 LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR-------DSRGNMVPWTISPLGMVE-HGQNNKIYRVNGVASLEPS 345 (527) Q Consensus 274 l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~-------d~~G~~~p~~v~pg~~~e-l~~~~k~~~ld~~~~la~~ 345 (527) ++..+..|++-..-+-......+.-...++...+. +..++ ..+.+.||+|+. |.++-++..++.......| T Consensus 250 vl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~~~~~~~~~~-~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~ 328 (548) T protein:vir:95 250 VLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYTVEPGKDRKN-RTIPIAPGMVFDDLEPGEDVGMIESNRPNPFL 328 (548) T ss_pred HHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccCCCCccccc-ccccccCCccccccCCCceeeecCCCCCCCCH Confidence 99999999666655555555555544444332221 11222 235688999985 8999999999976567889 Q ss_pred HHHHHHHHHHHHHhhcCch-hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhc Q lcl|Aclame:pro 346 QTHMNKAEEAMQQTKGIPD-IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYE--GVG 422 (527) Q Consensus 346 ~~~~d~L~~~l~~vs~tP~-va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e--~v~ 422 (527) .+++..+++.|+...++|- +..| |- ++ |-.+.+..+.+.-..+++.|-.+...+-| -+-.+||...- +.. T Consensus 329 ~~f~~~~lr~IAaglGipYe~ltg--D~-s~-nYSS~R~~l~e~~r~~~~~q~~~i~~~~~---Pi~~~wle~a~l~G~i 401 (548) T protein:vir:95 329 EGFRNGQLRMIGAGTRSTYSSVSR--AY-DG-TYSAQRQELVEGWLGYDLLQHEFIDYWCR---PVYRSWLQMYLLARKE 401 (548) T ss_pred HHHHHHHHHHHHhhcCCCHHHHhc--cc-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCc Confidence 9999999999999999995 5555 53 44 88899999888878777777655444333 22333332211 111 Q ss_pred c--cccccceeEEEEeC-CCCC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 423 I--DDADKKLTVTITFR-DPKP-VNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAE 498 (527) Q Consensus 423 ~--~~~~~~~~v~v~w~-d~lP-~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~a 498 (527) . .......+..|.|- +..| .|..+++++.+.++.+|+.|+++.+++. |.+ +++-++++.+..+.+ ++.- T Consensus 402 ~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~----G~D-~~ev~~q~a~E~~~~--~~~G 474 (548) T protein:vir:95 402 RLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARAR----GRD-PRELKKSRETEIKAN--RAAG 474 (548) T ss_pred CCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHh----CCC-HHHHHHHHHHHHHHH--HHcC Confidence 0 11123446778884 4444 7999999999999999999999999875 433 333334333333322 1111 Q ss_pred h---cCcccccc-cccCCCCcccccccCCCCCC Q lcl|Aclame:pro 499 A---ADPFGAQM-AAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 499 a---~d~~g~~~-~~d~g~~d~~~~~~~~~~~~ 527 (527) + .||..... .+.+..++.+-...+++.|| T Consensus 475 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (548) T protein:vir:95 475 LVFSSDAYHQLVKSGMDPVEAVQKVYLGVGKML 507 (548) T ss_pred CCCCCcccccccccccCCCCchhhhcccccccc Confidence 1 12221111 12222223333445556666 No 82 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=99.80 E-value=3.9e-19 Score=121.52 Aligned_cols=511 Identities=13% Similarity=0.038 Sum_probs=234.9 Q ss_pred CCCC----------hhhhhhhh---------HHhhcccCCCCCCChHHHHHHHH---------------HHHHHHHhcCC Q lcl|Aclame:pro 1 MGQD----------KRQYGSTQ---------QLRAGEANFPNAVTDFDKARLAS---------------YRLYEDMYLTN 46 (527) Q Consensus 1 m~~~----------~~qy~~~~---------~~~~~~~~~~~~v~~~d~~Rl~a---------------Y~~~~~~y~~~ 46 (527) |+=- .+-|++.. ..-+...+ +.-.-.-.+||.. .++=.+||+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~r~~a~~d~~fy~G~ 78 (776) T protein:vir:93 1 MFDLNDKDSTQLVPARTDEGELSPGEDAAQREKPANPLD--SEQAVELHSRLLSYYRQELSRQQDNRAEMAVDEDYYDNI 78 (776) T ss_pred CCCccccccccccccccccccCCCCCcccchhcccCCCC--CHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHhCCC Confidence 1100 01111111 11000000 0000011111111 12335899999 Q ss_pred hhheEeeecCCcccccccccCCchhHHHHhhhhhhccCc---cccccCc-chhH----HHHHHHHHHhcCchhhHHHHhH Q lcl|Aclame:pro 47 TSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGL---KWEFSKK-DAKV----DDAIRVLFDRENWEQKFESLKR 118 (527) Q Consensus 47 ~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~---~~~i~~~-~~~v----~~~lr~w~~~e~l~~k~~~~~r 118 (527) +|. ..++..--+.++.++-++-.+.+|++++++.-.+. .+.+..+ ++++ ...++.+.+.+++...+..+-. T Consensus 79 Qw~-~~~~~~l~~~g~p~~~~N~i~~~i~~v~g~~~~nr~~~~~~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~~~af~ 157 (776) T protein:vir:93 79 QWS-QDEIDELKERGQAPTVYNVISQSVNWIIGSEKRGRSDFKVLPRRKDGGKAAERKTALLKYLSDVNHTPFERSMAFE 157 (776) T ss_pred CCC-HHHHHHHHhcCCceEEecchHHHHHHHHHHHHhCCcceEEecCChhHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH Confidence 875 11221223345777888889999999999985432 2223322 2332 4455666677779999999999 Q ss_pred hhhhcccEEEEEEecCCCCCccceEEEEEccceEEEE---ecCC--CCCceEEEEEEEeeeCCCCcccee---------- Q lcl|Aclame:pro 119 WTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPY---EDPR--YPGQVLGVYLVDEYPHPDSEKKNE---------- 183 (527) Q Consensus 119 ~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~---~d~d--~~~~v~~vh~a~~~~~pd~~~~~~---------- 183 (527) ++++.|-||+++.||+.. .+..++++.+||..+|.- ..+| +...+.+.. |.+.++-+... T Consensus 158 d~~~~G~G~~~v~~d~~~-~~~~~~~~~~~p~~i~~Dp~a~~~D~sDar~~~~~~----~~~~~~~~~~~p~~~~~~~~~ 232 (776) T protein:vir:93 158 ETTKAGIGWLESQVQDEN-DGEPIYAGAESWRNILWDSTYRRLDMDDCRYIFRVK----WVDLDVMLAIFPERAAQLRAA 232 (776) T ss_pred HhhhcCcceEEEEeeccC-CCCceEeeccChhheeeccccccCCHHHHhhhhhhc----cCCHHHHHHhcCCchHHHHHh Confidence 999999999999999865 466788888999887762 2222 222222221 11111100000 Q ss_pred ---e-------------eeeeeeeeeee-cCCccc--cCCccceeeeccccc-----------cc-----cccccc---- Q lcl|Aclame:pro 184 ---K-------------CARVQKYMKTL-DDDGKP--VPGGAIKYTEELYEP-----------GK-----WDDRPE---- 224 (527) Q Consensus 184 ---k-------------~~rr~~~~~~~-~~~g~p--~~~g~i~~~~~~~~~-----------g~-----wd~~~~---- 224 (527) . ......+.+.- ...+.. -...+|...++.++- +. |+..+. T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~E~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 312 (776) T protein:vir:93 233 AVDNFETWGTDDIDGDDAMDSPEYERSMNSVTAGAVAYARKRVRMIEAWFRMPVRVQRLKGRNSDFRGEVFDPNDERHVL 312 (776) T ss_pred hhhcccccchhcccccccccccccccccccccccccccCCCeEEEEEEEEeeeeehhhcccccccccceeecccchHHHH Confidence 0 00000000000 000000 000122222221100 00 110000 Q ss_pred -----------ccccccceeeeccCccc--ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 225 -----------SPLEPDDIKKLSTLTEE--EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLI 291 (527) Q Consensus 225 -----------~~~~~~~~~~~~~~~~e--~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i 291 (527) ..........+..+..+ .+-|.|.+++|+|.|+..+.+.+.||.|-+..++.+++.+|+++|.+..+ T Consensus 313 ~~~~g~~~~~~~~~~~v~~~~~~g~~~l~~~~~p~~~~~~Pfv~~~~~~~~~~~~~~G~v~~~~d~Q~~~N~~~s~~~~~ 392 (776) T protein:vir:93 313 EVESGRAVLAVSPMMRMHCAIMTTRDLMWAGPSPYRHNRYPFTPIWGFRRARDGMPYGVIRFMRGMQDDVNKRLSKALYI 392 (776) T ss_pred HhhcCceeehheeeeeeEEEEEecchhhhccCCCCCCCccceEEecCceecccccccchHHhhhHHHHHHHHHHHHHHHh Confidence 00000011111223333 44566779999999999989999999999999999999999999999988 Q ss_pred HHHhCCceEEeccCC-CcCCCCcccceecCCCeeEecCCCC--ceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcc Q lcl|Aclame:pro 292 MVFGGLGFYATDSAP-PRDSRGNMVPWTISPLGMVEHGQNN--KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVG 368 (527) Q Consensus 292 ~~~~g~P~~~~~g~~-~~d~~G~~~p~~v~pg~~~el~~~~--k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G 368 (527) +- ..++++..|.- ..+. ...-...||.||.+.+++ .+.......-..++.+.++.+...|.+++++...++| T Consensus 393 l~--~~~~~~~~gav~~~d~---~~~~~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGi~~~~~G 467 (776) T protein:vir:93 393 LS--TNKVLMEEGAVDDIDE---FRREAARPDAVMTVKNGKLGAVKMDVDRDLAPAHLELASRSIQMIQQVGGVTDEMLG 467 (776) T ss_pred hc--CCceeeccccccchHH---HHHhcccCCceeeeCCccccccccccCcCccHHHHHHHHHHHHHHHHhhCcChHHhC Confidence 74 44566665542 2221 111114577777776554 4433333334556888888999999999999999999 Q ss_pred cccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhccc-cc-ccc--------------- Q lcl|Aclame:pro 369 VVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYE--GVGID-DA-DKK--------------- 429 (527) Q Consensus 369 ~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e--~v~~~-~~-~~~--------------- 429 (527) ..+++.||.|+.....--..+....--.+..+..++++.++..+..-|. .+..+ +. ... T Consensus 468 --~~~n~~Sg~ai~~~~~~~~~~~~~~~dn~~~~~~~~~~~~l~li~~~~~~~r~~ri~~~~~~~~~v~in~~~~~nd~~ 545 (776) T protein:vir:93 468 --RTTNAVSGVAIQARQEQGSVATNKLFDNLRLAFQQHGEKELSLIEQYMTEEKQFRITNSRGNPEYVTVNDGLPENDIT 545 (776) T ss_pred --CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEEeecCCCcceEEecccchhhhhc Confidence 4567789999887665322222222112233344444444433333232 11111 10 011 Q ss_pred ---eeEEEEeCCCCCCCHHHHHHHHHHHHh-----------------cCCccHHHHHHHHHHhcCCCCchHHHH------ Q lcl|Aclame:pro 430 ---LTVTITFRDPKPVNNEKRFAQLLELWE-----------------AGLIPAKKLTEELSKIMGFELTEEDFR------ 483 (527) Q Consensus 430 ---~~v~v~w~d~lP~D~~~~i~~~v~l~~-----------------aGlls~~ta~~~L~~~g~~~~~e~~~~------ 483 (527) +-|.|.=++..|+=+++-.+.++.+.+ +++-..+...++|.++.+..-+..... T Consensus 546 ~~~~dv~v~~~~~~~s~r~~~~~~l~ql~~~~~p~~~~~~~~~~~e~~d~p~~~e~~~~l~~~~~~~~p~q~~~~~e~~~ 625 (776) T protein:vir:93 546 RTKADFIIDEAEWRATMRQAAVAELMEVIGKMPPEIALTMLDLLVENMDIPNRDELVKRIRAVNGQKDPDQDEPTPEEIA 625 (776) T ss_pred cceeeEEEeecccchhHHHHHHHHHHHHHhhcChhhHHHHHHHHHHhcCccchHHHHHHHHHhhcccccchhhcchhHHH Confidence 123333334445434555555554443 222223333444444332211111000 Q ss_pred -HHHHHHHHHHH-------------------HHHH--hcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 484 -QATEDKKTQGI-------------------AQAE--AADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 484 -~~~e~~a~~a~-------------------~~~a--a~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +..+-...++. ++++ .+.+.-.....+ ...-.+--.+....+. T Consensus 626 ~qq~q~~~~q~q~~~~~a~~~~~qa~a~~~~aea~~~~aqa~~~~~~a~-~~~~~a~q~a~qa~~~ 690 (776) T protein:vir:93 626 REQAQQQQQQYNDALAIATLEEQQAKARKAAAEAQVAEAKAKHISRMAI-REGVGAVKDATDAATA 690 (776) T ss_pred HHHHhhHHHHHHHHHhhhhhhHhhHHHHHHHHHHHHHhhhhhhhhhcch-hhhhhhhhhhhhhhhh Confidence 00000000000 0000 000000000000 0000000000000011 No 83 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.79 E-value=8.3e-18 Score=114.22 Aligned_cols=439 Identities=11% Similarity=0.041 Sum_probs=246.1 Q ss_pred CCCCh-------hhh-hhhh---HHhhcccCCCCCCChHHH---HHHHHHHHHHHHhcCChhheEeeecCCccccccccc Q lcl|Aclame:pro 1 MGQDK-------RQY-GSTQ---QLRAGEANFPNAVTDFDK---ARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIY 66 (527) Q Consensus 1 m~~~~-------~qy-~~~~---~~~~~~~~~~~~v~~~d~---~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~ 66 (527) |.-.. ..| .++. ..++|. .+...+++.. .|-..-...-++|.|++ T Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~w--~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~------------------- 65 (530) T protein:vir:38 7 VGPDGKTSLREYAGYHGGGGGFGGQLRGW--NPPSESADAALLPNYSRGNARADDLVRNNG------------------- 65 (530) T ss_pred ecCccccchHHHhhhhcccCCCCCccccc--ccCCCCHHHHHHHHHHHHHHHHHHHHhcCh------------------- Confidence 22111 122 1111 112221 1122233322 23333344667777772 Q ss_pred CCchhHHHHhhhhhhccCccccccC------------c----chhHHHHHHHHHHh----c------CchhhHHHHhHhh Q lcl|Aclame:pro 67 VPNGEKLIEAKMRFLGQGLKWEFSK------------K----DAKVDDAIRVLFDR----E------NWEQKFESLKRWT 120 (527) Q Consensus 67 ~p~~~k~v~~~~~~Lg~~~~~~i~~------------~----~~~v~~~lr~w~~~----e------~l~~k~~~~~r~a 120 (527) -++.+|++.++.+ +|.+..++. . +.+++++|+.|.+. + ++......+.|.- T Consensus 66 --~a~~av~~~~~nv-VG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~ 142 (530) T protein:vir:38 66 --YAANAVQLHQDHI-VGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMH 142 (530) T ss_pred --HHHHHHHHHHHHh-hCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHH Confidence 2778899888877 666554332 1 23467777888863 1 2445555678888 Q ss_pred hhcccEEEEEEecCCCCCccceEEEEEccceEEE-EecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCc Q lcl|Aclame:pro 121 EIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP-YEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDG 199 (527) Q Consensus 121 ~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp-~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g 199 (527) ++-||.+.+++|++..+......|..++|..+-- ...+++..=+.||. +- ..+..++|.+.-.. ..| T Consensus 143 ~~dGE~~~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe----~d-----~~Gr~~aY~i~~~~---~~~ 210 (530) T protein:vir:38 143 AFNGELCVQATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVK----IN-----DSGAALGYYVSDDG---YPG 210 (530) T ss_pred hhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeE----EC-----CCCceEEEEEeecc---CCC Confidence 9999999999999877655556778899988653 22333222133332 21 12333444322100 000 Q ss_pred cccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHH Q lcl|Aclame:pro 200 KPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIA 279 (527) Q Consensus 200 ~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~d 279 (527) .. ...|.. +.. -.+++..-|+|+-+..+++...|.|.|+.++..+. T Consensus 211 ~~--------------~~~~~~----------~~~----------~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~ 256 (530) T protein:vir:38 211 WM--------------AQNWTY----------IPR----------ELPGGRPSFIHVFEPMEDGQTRGANAFYSVMEQMK 256 (530) T ss_pred cc--------------ccccce----------eee----------eeccChhHeEeeccccCCCcccCCchHHHHHHHHH Confidence 00 001110 000 01233446999999989999999999999999999 Q ss_pred HHHhhHHHHHHHHHHhCCceEEeccCCCc----------CCC----------------CcccceecCCCeeEecCCCCce Q lcl|Aclame:pro 280 SVNQTMTDEDLIMVFGGLGFYATDSAPPR----------DSR----------------GNMVPWTISPLGMVEHGQNNKI 333 (527) Q Consensus 280 eLn~~lsd~~~i~~~~g~P~~~~~g~~~~----------d~~----------------G~~~p~~v~pg~~~el~~~~k~ 333 (527) .|+.-..-+.......+.=...++...+. +.+ .+..++.++||+|+.|.++.++ T Consensus 257 ~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i 336 (530) T protein:vir:38 257 MLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSL 336 (530) T ss_pred HHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCee Confidence 99665544444444444333333211110 000 0112356899999999999999 Q ss_pred EEeccccChHHHHHHHHHHHHHHHHhhcCchhhc-ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 YRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAV-GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVT 412 (527) Q Consensus 334 ~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~-G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~ 412 (527) ..++.....+.|..++..+++.|....++|--.+ | |-+.+ |=.|.+..+.+.-..++++|..+...+ .+-+.. T Consensus 337 ~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~--D~s~~-nYSS~R~~~~e~~r~~~~~q~~~~~~~---~~pi~~ 410 (530) T protein:vir:38 337 NLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSR--NYSQM-SYSTARASANESWAYFMGRRKFVASRQ---ACQMFL 410 (530) T ss_pred eeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhc--ccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHH Confidence 9999766778999999999999999999997555 5 54443 666888888888888888887655433 222333 Q ss_pred HHHhhhhhhcccccc------------cceeEEEEe--CCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCc Q lcl|Aclame:pro 413 QWLPAYEGVGIDDAD------------KKLTVTITF--RDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELT 478 (527) Q Consensus 413 ~~L~~~e~v~~~~~~------------~~~~v~v~w--~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~ 478 (527) +||.. .++.+... ...++.+.| ....-.|..++++..+..+.+|+.|+++.+++. |.+ + T Consensus 411 ~wl~~--av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~----G~D-~ 483 (530) T protein:vir:38 411 CWLEE--AIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR----GDD-Y 483 (530) T ss_pred HHHHH--HHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc----CCC-H Confidence 44432 11111110 112344555 333446999999999999999999999998865 433 3 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcccc---cccccCCCCcccccccCCCC Q lcl|Aclame:pro 479 EEDFRQATEDKKTQGIAQAEAADPFGA---QMAAEQGIPDEEDDQALNGQ 525 (527) Q Consensus 479 e~~~~~~~e~~a~~a~~~~aa~d~~g~---~~~~d~g~~d~~~~~~~~~~ 525 (527) ++-++++.++.+.. ++.-+..++.. ...+....++++. +..++. T Consensus 484 ~~v~~q~a~e~~~~--~~~Gl~~~~~~~~~~~~~~~~~~~~~~-d~~~~a 530 (530) T protein:vir:38 484 QEIFAQQVRESMER--RAAGLNPPAWAAAAFEAGVKKSNEEEQ-DGARAA 530 (530) T ss_pred HHHHHHHHHHHHHH--HHcCCCCCCCcccccCCCCCCCCCCCC-CCCCCC Confidence 44444444333322 22222222222 2222222222222 233333 No 84 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.77 E-value=4.1e-17 Score=110.43 Aligned_cols=442 Identities=10% Similarity=-0.001 Sum_probs=240.7 Q ss_pred CCCC-hhhhhhhhHH---hhcccCCCCCCChH-----HHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchh Q lcl|Aclame:pro 1 MGQD-KRQYGSTQQL---RAGEANFPNAVTDF-----DKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGE 71 (527) Q Consensus 1 m~~~-~~qy~~~~~~---~~~~~~~~~~v~~~-----d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~ 71 (527) ++.+ ...|+++... +.|.. +...+++ +.++|++ ..-+.+.|+ |-++ T Consensus 20 ~~~~~~~~y~gA~~~~r~~~~w~--~~~~s~~~~~~~~~~~lr~--RaRdL~rNn---------------------~~a~ 74 (553) T protein:vir:63 20 SASLGGGGLEGASRLSRETVSWN--PSLRSPDALINPLKRIADA--RGRDMADND---------------------GFTN 74 (553) T ss_pred hhhhhcccccccccCCCcccccc--cCCCChHHHHHHHHHHHHH--HHHHHHhcC---------------------hHHH Confidence 2221 2467666543 33322 1222222 2233332 345566666 2377 Q ss_pred HHHHhhhhhhccCccccccCc-----------------chhHHHHHHHHHHhc----------CchhhHHHHhHhhhhcc Q lcl|Aclame:pro 72 KLIEAKMRFLGQGLKWEFSKK-----------------DAKVDDAIRVLFDRE----------NWEQKFESLKRWTEIRG 124 (527) Q Consensus 72 k~v~~~~~~Lg~~~~~~i~~~-----------------~~~v~~~lr~w~~~e----------~l~~k~~~~~r~a~~~G 124 (527) .+|++.+... ||.+..++.- ++.++..|+.|++.. ++......+.|..++-| T Consensus 75 ~av~~~~~nv-VG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dG 153 (553) T protein:vir:63 75 GAVGYQRDSI-VGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTG 153 (553) T ss_pred HHHHHHHHhh-ccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCC Confidence 8888877777 6655544211 234677888898642 14444566778889999 Q ss_pred cEEEEEEecCCCCCccceEEEEEccceEEEE-ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccC Q lcl|Aclame:pro 125 DYVLLLIGDDEKDEGSRLSLHEVDPSTYFPY-EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVP 203 (527) Q Consensus 125 Dav~~i~~d~~k~~~~r~~i~~vdP~~~fp~-~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~ 203 (527) +.+.+++|.++.+...-..|..++|..+-.. ..+++..=+.||- +- .++..++|.+ T Consensus 154 E~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE----~d-----~~Gr~vaY~i-------------- 210 (553) T protein:vir:63 154 EVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQ----YD-----KRGRPQGYWI-------------- 210 (553) T ss_pred ceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeE----EC-----CCCceEEEEe-------------- Confidence 9999999998765433345677888776533 2232221133331 11 1122233221 Q ss_pred CccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHh Q lcl|Aclame:pro 204 GGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQ 283 (527) Q Consensus 204 ~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~ 283 (527) +.-++|++-........-.++.. .. .++--=|+|+-...+++...|.|.|+.++..+..|++ T Consensus 211 --------~~~hPgd~~~~~~~~~~~~r~~~------~~----~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~ 272 (553) T protein:vir:63 211 --------QVAHPGDLYQMAPDMYKWKFVQQ------SK----PWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKR 272 (553) T ss_pred --------eccCCCccccccccccceeeecc------cc----ccChhHheecccccCCCcccCCchHHHHHHHHHHHhH Confidence 11122221100000000000000 01 1223346888887789999999999999999999966 Q ss_pred hHHHHHHHHHHhCCc-eEEeccCCCc---------CCCC------------------cccceecCCCeeEecCCCCceEE Q lcl|Aclame:pro 284 TMTDEDLIMVFGGLG-FYATDSAPPR---------DSRG------------------NMVPWTISPLGMVEHGQNNKIYR 335 (527) Q Consensus 284 ~lsd~~~i~~~~g~P-~~~~~g~~~~---------d~~G------------------~~~p~~v~pg~~~el~~~~k~~~ 335 (527) -..-+-......+.= .+..+..++. ++.| ....+.++||+|..|.++.++.. T Consensus 273 y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~ 352 (553) T protein:vir:63 273 FKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNL 352 (553) T ss_pred HHHHHHHHHHHhhhheeeeecCCChhhhhhhcccccccccccccccccccccccccccccceeecCceeeecCCCCeeee Confidence 554444444444443 3333322110 0000 11235688999999999999999 Q ss_pred eccccChHHHHHHHHHHHHHHHHhhcCch-hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 336 VNGVASLEPSQTHMNKAEEAMQQTKGIPD-IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQW 414 (527) Q Consensus 336 ld~~~~la~~~~~~d~L~~~l~~vs~tP~-va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~ 414 (527) ++.......|..++..+++.|+...++|- +..| |-+.+ |=.|.+..+..--..+...|..|...+-| -+-.+| T Consensus 353 ~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~--D~s~~-nYSS~R~~~~e~~r~~~~~q~~~~~~~~~---pi~~~w 426 (553) T protein:vir:63 353 KPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTR--DFSKA-NYSSIQAGIAMTRRFLEGRKKMCADRLAT---EFFTLW 426 (553) T ss_pred cCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhh--hcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH Confidence 99765678899999999999999999995 5556 54433 56678877777766666666545443333 222333 Q ss_pred Hhhhhhhcccc---------------cccceeEEEEeCCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 415 LPAYEGVGIDD---------------ADKKLTVTITFRDPKP--VNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFEL 477 (527) Q Consensus 415 L~~~e~v~~~~---------------~~~~~~v~v~w~d~lP--~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~ 477 (527) |... ++.+. .....++.|.|-.|-. .|..++++..+..+.+|+.|+++.++++ |. . T Consensus 427 l~~a--~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G~~t~~~~~a~~----G~-D 499 (553) T protein:vir:63 427 LEEA--IAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTYEREIARL----GG-D 499 (553) T ss_pred HHHH--HHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHh----CC-C Confidence 3221 11111 0112345677766554 4999999999999999999999999876 43 3 Q ss_pred chHHHHHHHHHHHHHHHHHH-HhcCccccccc--------ccCCCCcccccccC Q lcl|Aclame:pro 478 TEEDFRQATEDKKTQGIAQA-EAADPFGAQMA--------AEQGIPDEEDDQAL 522 (527) Q Consensus 478 ~e~~~~~~~e~~a~~a~~~~-aa~d~~g~~~~--------~d~g~~d~~~~~~~ 522 (527) +++-++++.+..+...+.-. ...|+...+.. ++++-.+...++.+ T Consensus 500 ~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 553 (553) T protein:vir:63 500 FRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQGE 553 (553) T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCcccccC Confidence 44444444444333211100 01223222111 11111111111222 No 85 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.76 E-value=7e-17 Score=109.14 Aligned_cols=444 Identities=11% Similarity=0.034 Sum_probs=239.7 Q ss_pred CCCCh--------------hhhhhhh----HHhhcccCCCCCCChHHH---HHHHHHHHHHHHhcCChhheEeeecCCcc Q lcl|Aclame:pro 1 MGQDK--------------RQYGSTQ----QLRAGEANFPNAVTDFDK---ARLASYRLYEDMYLTNTSDYQVILRGGDE 59 (527) Q Consensus 1 m~~~~--------------~qy~~~~----~~~~~~~~~~~~v~~~d~---~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~ 59 (527) ||-.+ ..|..+. ..++|. .+..-+++.. .|-..-...-+++.|+ T Consensus 3 ~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w--~p~~~s~~~~~~~~~~~lr~RaRdl~rNn------------- 67 (533) T protein:vir:34 3 TPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSW--NPPSESVDAALLPNFTRGNARADDLVRNN------------- 67 (533) T ss_pred CchhhhhhcccccchHHHHHhhhhccCCCCCccccc--ccCCCCHHHHHHHHHHHHHHHHHHHHhcC------------- Confidence 44222 1122111 111111 1222222221 1222222345666666 Q ss_pred cccccccCCchhHHHHhhhhhhccCccccccC------------c----chhHHHHHHHHHHhc----------CchhhH Q lcl|Aclame:pro 60 GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSK------------K----DAKVDDAIRVLFDRE----------NWEQKF 113 (527) Q Consensus 60 ~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~------------~----~~~v~~~lr~w~~~e----------~l~~k~ 113 (527) |-++.+|++.++++ ||.+..++. + ++.+++.|+.|.+.. ++.... T Consensus 68 --------~~a~~av~~~~~nv-VG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q 138 (533) T protein:vir:34 68 --------GYAANAIQLHQDHI-VGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMI 138 (533) T ss_pred --------hHHHHHHHHHHHHh-hCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHH Confidence 23778888888888 666554432 1 234677888898631 244555 Q ss_pred HHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEE-EecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeee Q lcl|Aclame:pro 114 ESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP-YEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYM 192 (527) Q Consensus 114 ~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp-~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~ 192 (527) ..+.|.-++-|+.+-+++|++..+...-..|..++|..+-- ...+++..=+.|| ++- .++..++|.+.-. T Consensus 139 ~l~~r~~~~dGE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GI----e~d-----~~Gr~~aY~i~~~ 209 (533) T protein:vir:34 139 REGVAMHAFNGELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGV----QIN-----DSGAALGYYVSED 209 (533) T ss_pred HHHHHHHHhCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeee----EEC-----CCCCeEEEEEeec Confidence 66788888999999999999876644445677799888653 2233222112333 111 1223333332100 Q ss_pred eeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCcccc Q lcl|Aclame:pro 193 KTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLA 272 (527) Q Consensus 193 ~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Le 272 (527) ...|.. ...|.. +.. . .+++--=|+|+-+..+++...|.|.|+ T Consensus 210 ---~~~~~~--------------~~~~~~----------~~~------~----~~v~a~~VlH~f~~~r~gQ~RGis~la 252 (533) T protein:vir:34 210 ---GYPGWM--------------PQKWTW----------IPR------E----LPGGRASFIHVFEPVEDGQTRGANVFY 252 (533) T ss_pred ---CCCCcc--------------ccccce----------eee------e----eccChhHeeeeccccCCCcccCCchHH Confidence 000000 000110 000 0 011122389999988999999999999 Q ss_pred chHHHHHHHHhhHHHHHHHHHHhCCceEEe-ccCCC------------cCC-------------CCcccceecCCCeeEe Q lcl|Aclame:pro 273 GLESLIASVNQTMTDEDLIMVFGGLGFYAT-DSAPP------------RDS-------------RGNMVPWTISPLGMVE 326 (527) Q Consensus 273 dl~~l~deLn~~lsd~~~i~~~~g~P~~~~-~g~~~------------~d~-------------~G~~~p~~v~pg~~~e 326 (527) .++..+..|++-..-+-......+.=...+ +..+. .+. .++-.++.++||+|+. T Consensus 253 pvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~ 332 (533) T protein:vir:34 253 SVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPH 332 (533) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCceeee Confidence 999999988655444433333333322222 22110 000 1111345689999999 Q ss_pred cCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchh-hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 327 HGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDI-AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQ 405 (527) Q Consensus 327 l~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q 405 (527) |.++.++..++.....+.|..++..+++.|....++|-. ..| |-|.+ |=.+.+..+.+.-..+++.|..+...+-| T Consensus 333 L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~--D~s~~-nYSS~R~~~~e~~r~~~~~q~~~~~~~~~ 409 (533) T protein:vir:34 333 LMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSR--NYAQM-SYSTARASANESWAYFMGRRKFVASRQAS 409 (533) T ss_pred cCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhh--hcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999997667788999999999999999999965 445 65444 66788888888878787777655543322 Q ss_pred HHHHHHHHHHhhhh--hhcccc--------cccceeEEEEeC--CCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhc Q lcl|Aclame:pro 406 FFYNLVTQWLPAYE--GVGIDD--------ADKKLTVTITFR--DPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIM 473 (527) Q Consensus 406 ~~~~li~~~L~~~e--~v~~~~--------~~~~~~v~v~w~--d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g 473 (527) -+-.+||...- +..... .....+..|.|- ...-.|..++++..+..+.+|+.|+++.+++. T Consensus 410 ---pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~---- 482 (533) T protein:vir:34 410 ---QMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR---- 482 (533) T ss_pred ---HHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc---- Confidence 22223332110 111000 011223455663 33456999999999999999999999998865 Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 474 GFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 474 ~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) |.++ ++-++++..+.+.. ++.-+..++......-.|.+..+.+++.+..-- T Consensus 483 G~D~-~ev~~q~a~e~~~~--~~~gl~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 533 (533) T protein:vir:34 483 GDDY-QEIFAQQVRETMER--RAAGLKPPAWAAAAFESGLRQSTEEEKSDSRAA 533 (533) T ss_pred CCCH-HHHHHHHHHHHHHH--HhcCCCCCCCCCcCccCCCCCCCCCCcccCCCC Confidence 4333 44444443333322 222222222222222223332222222222222 No 86 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.76 E-value=3.2e-17 Score=110.99 Aligned_cols=437 Identities=12% Similarity=0.071 Sum_probs=231.4 Q ss_pred CCCChhhhh----------------hhhHHhhcccCCCCCCChHH----HHHHHHHHHHHHHhcCChhheEeeecCCccc Q lcl|Aclame:pro 1 MGQDKRQYG----------------STQQLRAGEANFPNAVTDFD----KARLASYRLYEDMYLTNTSDYQVILRGGDEG 60 (527) Q Consensus 1 m~~~~~qy~----------------~~~~~~~~~~~~~~~v~~~d----~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~ 60 (527) |-.+++-|. ++..-. +..+.++.-++.+ .++|++ ..-+.+.|+ T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~~-~~~~~~~~s~d~~~~~~~~~lr~--RaRdl~rNn-------------- 63 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGGH-RWQDIGDYGPDTAVASGIQTLRA--RSHHNVRNN-------------- 63 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccCc-ccCCCCCCChhHHHHHHHHHHHH--HHHHHHhcC-------------- Confidence 655555443 222111 1112223223322 222222 134455555 Q ss_pred ccccccCCchhHHHHhhhhhhccCccccccCc------chhHHHHHHHHHHhcC------chhhHHHHhHhhhhcccEEE Q lcl|Aclame:pro 61 DQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKK------DAKVDDAIRVLFDREN------WEQKFESLKRWTEIRGDYVL 128 (527) Q Consensus 61 ~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~------~~~v~~~lr~w~~~e~------l~~k~~~~~r~a~~~GDav~ 128 (527) |-++.+|++.+.+. +|.+..++.. ++.++++|+.|.++++ ++.....+.|..++-|+.+- T Consensus 64 -------~~a~~av~~~~~~v-VG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~ 135 (495) T protein:vir:10 64 -------PWATNAVATWVAAA-VGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFV 135 (495) T ss_pred -------hHHHHHHHHHHHhh-cCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEE Confidence 23778999988888 7766655432 3557888889998664 33445558888899999999 Q ss_pred EEEecCCCCC-ccceEEEEEccceEE-EEecCCC--CCc-eEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccC Q lcl|Aclame:pro 129 LLIGDDEKDE-GSRLSLHEVDPSTYF-PYEDPRY--PGQ-VLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVP 203 (527) Q Consensus 129 ~i~~d~~k~~-~~r~~i~~vdP~~~f-p~~d~d~--~~~-v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~ 203 (527) +++|++.++. ..-..|..++|..+- |...+.. .++ ..||. +- ..+..++|.+. T Consensus 136 ~~~~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe----~d-----~~Gr~vaY~i~------------- 193 (495) T protein:vir:10 136 IKKPRPLSEGLSVPLQLQIIEPDMLASDIPDETLPSGGYVKGGIR----FS-----NGGKRKAYCFY------------- 193 (495) T ss_pred EEeecccCCCCccceEEEEechhhcCCCCCCCCCCCCCEEEeceE----EC-----CCCceEEEEEe------------- Confidence 9999875531 122456779999874 5433221 112 23442 11 12233333321 Q ss_pred CccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHh Q lcl|Aclame:pro 204 GGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQ 283 (527) Q Consensus 204 ~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~ 283 (527) .=++|++.... ...+- .++|-. =|+|+-.. +++...|.|.|+.++. +..|++ T Consensus 194 ---------~~hpgd~~~~~-~~~~~------------~rvpA~----~vlH~f~~-r~gQ~RGis~la~i~~-l~~l~~ 245 (495) T protein:vir:10 194 ---------RNHPAESSLIG-DPVDT------------VWIKAE----HVLHVTVL-TVRSDAGAPWFQLLLR-LNELDQ 245 (495) T ss_pred ---------ecCCCcccccc-cccce------------eeechh----heEecccc-CCCcccCcchhHHHHH-HHHhhH Confidence 11122111000 00000 011100 16777654 6799999999988776 456644 Q ss_pred hHHHHHHHHHHhCCce-EEeccCCC-----------cCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHH Q lcl|Aclame:pro 284 TMTDEDLIMVFGGLGF-YATDSAPP-----------RDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNK 351 (527) Q Consensus 284 ~lsd~~~i~~~~g~P~-~~~~g~~~-----------~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~ 351 (527) -..-+-......+.-. +..+..+. .+..|. ....++||+|..|.++-++..++.....+.|.+++.. T Consensus 246 y~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~ 324 (495) T protein:vir:10 246 YEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGK-RITGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRY 324 (495) T ss_pred HHHHHHHHHHHhhhheeeeecCCCccccccccCccccccCcc-cceecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHH Confidence 4333333333333333 22222111 111222 2356899999999999999999976567889999999 Q ss_pred HHHHHHHhhcCchhhc-ccccccccccHHHHHHHhccHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHhhhh-hhcccccc Q lcl|Aclame:pro 352 AEEAMQQTKGIPDIAV-GVVDAAVAESGIALDLKLSAILSSCAEQEL-ELKSVLKQ-FFYNLVTQWLPAYE-GVGIDDAD 427 (527) Q Consensus 352 L~~~l~~vs~tP~va~-G~~d~s~a~SG~ALql~~~PLlakv~~krl-~~~~~~~q-~~~~li~~~L~~~e-~v~~~~~~ 427 (527) +++.|+...++|--.+ | |-+.+ |-.+++..+.+.-..+++.|. .+...+-| +++.++...+.+.. .+...-.. T Consensus 325 ~lr~iaaglGi~Ye~ltg--D~s~~-nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~ 401 (495) T protein:vir:10 325 QLLSIAKGYGITYEMLTG--DLRGV-NYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQR 401 (495) T ss_pred HHHHHHhhcCCCHHHHhc--ccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchhh Confidence 9999999999998555 5 54443 666888888877777766553 23332222 33333332221110 11000011 Q ss_pred cceeEEEEeCCCC--CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccc Q lcl|Aclame:pro 428 KKLTVTITFRDPK--PVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGA 505 (527) Q Consensus 428 ~~~~v~v~w~d~l--P~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~ 505 (527) ...++.|.|-.|- -.|..+++++.+..+.+|+.|+++.+++. |.+| ++-++++.++.+. ..+++=++.+ T Consensus 402 ~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~----G~D~-~~v~~q~a~e~~~----~~~~Gl~~~~ 472 (495) T protein:vir:10 402 RRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAER----GYDM-EELFDMISDANQL----IDEYDLRLDS 472 (495) T ss_pred hHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc----CCCH-HHHHHHHHHHHHH----HHHcCCCCCC Confidence 2234566774443 36999999999999999999999999865 4343 3333333333322 1222222111 Q ss_pred ---cccccCCCCcccccccCCCC Q lcl|Aclame:pro 506 ---QMAAEQGIPDEEDDQALNGQ 525 (527) Q Consensus 506 ---~~~~d~g~~d~~~~~~~~~~ 525 (527) ...+.+-.++.+.+...++. T Consensus 473 ~p~~~~~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 473 DPRYVNGSGAEQKSVMEAALNNE 495 (495) T ss_pred CCCcCCCccCCCCCCCCCCCCCC Confidence 11111111122222222222 No 87 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.76 E-value=9.8e-19 Score=119.32 Aligned_cols=428 Identities=11% Similarity=0.090 Sum_probs=233.0 Q ss_pred CCCChhhh--------hhhhHHhhcccC-C----CCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccC Q lcl|Aclame:pro 1 MGQDKRQY--------GSTQQLRAGEAN-F----PNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy--------~~~~~~~~~~~~-~----~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~ 67 (527) |.=...+= ++-..|+.|.+. . .++-...- .+...|.+|.+.|..+ T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~-~~~~~~~~l~~lY~~~--------------------- 58 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGN-GQKLDLKACENLYASN--------------------- 58 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCc-ccccCHHHHHHHHHhC--------------------- Confidence 43221110 122334433321 0 00000011 1233577777777433 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +=++++||+++..+ ...++.|++.+.+..+.++.|+++-++..++..+.||+-+-|.|+..|.-.+.+++ T Consensus 59 ~l~r~iVd~~a~d~-~r~g~~i~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~--------- 128 (461) T protein:vir:80 59 SIAMNIVDIISEDM-VRAGWSLKTDNKEMKKNIESKWRKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNRE--------- 128 (461) T ss_pred CccchhhccchHHh-hcCCeeeecCCHHHHHHHHHHHHHhhHHHHHHHHHHhhcccccEEEEEEeecCCcc--------- Confidence 12789999999999 66677889999999999999998878889999999999999998766654433321 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|..-.|+. +..-+.+.-++.. |+.+-... . ...+ | .+.-+.+-..|.+-+ .... T Consensus 129 ~~~~~~pl~-~~~~~~~~~l~~~--~~~~i~~~---------~----~~~d--p--~sp~fg~P~~y~i~~-----~~~~ 183 (461) T protein:vir:80 129 QADLSTAID-PKTIKSIPYINTF--NTQKVTQL---------Y----LNQD--M--FSEHFGEVEFFEVNR-----VSQL 183 (461) T ss_pred ccCccCCcc-cccccceeEEEec--cccccchh---------h----hccc--C--cCcccccceEEEEec-----cccc Confidence 222222221 2211122222222 22221000 0 0000 0 011111112222211 0000 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) ....... + ...-..-|..-+|+||.|.+.++..||.|.|+.+...+....+++--....+.....+++.+.+... T Consensus 184 ~~~~~~~-~----~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~ 258 (461) T protein:vir:80 184 GEEILSG-T----TASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDA 258 (461) T ss_pred ccccccc-c----cCccceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHh Confidence 0000000 0 0000112345689999999889999999999999999988888887776666667788888776554 Q ss_pred cCCCC--ccc---c-eecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHH Q lcl|Aclame:pro 308 RDSRG--NMV---P-WTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIAL 381 (527) Q Consensus 308 ~d~~G--~~~---p-~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~AL 381 (527) ...+. +.. . +.-+-|++ -++.+.+|..++. +++++.+-++.+...|+..|++|.+-|....++..-||-.= T Consensus 259 ~~~~~~~~~~~~~~~~~~~~g~~-~~d~~e~~e~~~~--~lsgl~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D 335 (461) T protein:vir:80 259 LNKDDKANLTAMLDFMFRTEALA-IIKGDEQLTKEST--NVSGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYD 335 (461) T ss_pred hhchHHHHHHHHHHHhcCCceEE-EEcCCcceEEEec--CcCCHHHHHHHHHHHHhhhhcCCeeeeecccCCccccchHH Confidence 32211 111 1 11123444 4788889999985 78899999999999999999999965433345444344433 Q ss_pred HHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccccccc--ceeEEEEeCCCCCCCHHHHHH-------HH Q lcl|Aclame:pro 382 DLKLSAILSSCAEQEL-ELKSVLKQFFYNLVTQWLPAYEGVGIDDADK--KLTVTITFRDPKPVNNEKRFA-------QL 451 (527) Q Consensus 382 ql~~~PLlakv~~krl-~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~--~~~v~v~w~d~lP~D~~~~i~-------~~ 451 (527) .-.|. .+++++|- .+...++++.+.++.... .+..... ...++|.|.+..+.|.++.++ .. T Consensus 336 ~~~yy---d~i~~~qe~~l~p~le~l~~~i~~s~~------~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~ 406 (461) T protein:vir:80 336 VMNYY---ARVSSIQENRLRPQLEYLTRLLMWASD------DCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEAD 406 (461) T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhc------ccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHH Confidence 33343 55555553 345556666544433211 1111112 245788999999888777654 46 Q ss_pred HHHHhcCCccHHHHHHHHHHhcCCCCc----hHHHHHHHHHHHHHHHHHHHhcCcccccccccC Q lcl|Aclame:pro 452 LELWEAGLIPAKKLTEELSKIMGFELT----EEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQ 511 (527) Q Consensus 452 v~l~~aGlls~~ta~~~L~~~g~~~~~----e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~ 511 (527) .+++++|+||.+++.+.|..-.+..++ ..+.+ .+.++ ...+....+..+|| T Consensus 407 ~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~e~~~g 461 (461) T protein:vir:80 407 QIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAE--IDKLA-------KLVYDAYAKKNADG 461 (461) T ss_pred HHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCch--hhhhh-------hhccccccccCCCC Confidence 788899999999999888543332222 12111 11111 11111111112222 No 88 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.75 E-value=5.9e-17 Score=109.56 Aligned_cols=441 Identities=10% Similarity=0.016 Sum_probs=238.7 Q ss_pred CCC-------ChhhhhhhhH--HhhcccCCCCCCChHHH---HHHHHHHHHHHHhcCChhheEeeecCCcccccccccCC Q lcl|Aclame:pro 1 MGQ-------DKRQYGSTQQ--LRAGEANFPNAVTDFDK---ARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVP 68 (527) Q Consensus 1 m~~-------~~~qy~~~~~--~~~~~~~~~~~v~~~d~---~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p 68 (527) .|- -.+-|+++.. ...+....+...+.+.. .|...-...-+.|.|++ T Consensus 19 ~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~--------------------- 77 (505) T protein:vir:96 19 WYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNP--------------------- 77 (505) T ss_pred hhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcCh--------------------- Confidence 100 0123554442 11222212333333332 23333344567777772 Q ss_pred chhHHHHhhhhhhccCc-cccccC--------cc----hhHHHHHHHHHHh--cC------chhhHHHHhHhhhhcccEE Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGL-KWEFSK--------KD----AKVDDAIRVLFDR--EN------WEQKFESLKRWTEIRGDYV 127 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~-~~~i~~--------~~----~~v~~~lr~w~~~--e~------l~~k~~~~~r~a~~~GDav 127 (527) -++.+|++.+... +|. +..++. .+ +.++..|+.|.+. |+ +......+.|.-++-||.+ T Consensus 78 ~a~~av~~~~~nv-VG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f 156 (505) T protein:vir:96 78 YAKRFYQLLKNNV-IGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVL 156 (505) T ss_pred HHHHHHHHHHHHh-cCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceE Confidence 2667888877776 553 332221 12 3467778889874 22 3333455788888899998 Q ss_pred EEEEecCCCCCccceEEEEEccceEEEEe-cCCCCCc--eEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCC Q lcl|Aclame:pro 128 LLLIGDDEKDEGSRLSLHEVDPSTYFPYE-DPRYPGQ--VLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPG 204 (527) Q Consensus 128 ~~i~~d~~k~~~~r~~i~~vdP~~~fp~~-d~d~~~~--v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~ 204 (527) .++++.+....+ ..|..++|..+--.. .+...+. ..||. + + ..+..++|.+- T Consensus 157 ~~~~~~~~~~~~--~~lqliepd~l~~~~n~~~~~~~~i~~GIe----~-d----~~Gr~~aY~i~-------------- 211 (505) T protein:vir:96 157 VREHRGYPNKWG--YALQILECDRLDLNYNADLQNGNRIRMSIE----L-D----AWERPVAYHLL-------------- 211 (505) T ss_pred EEEeecCCCCcc--eEEEEechhhcCCCCCcccCCcCeEEeceE----E-C----CCCceEEEEEe-------------- Confidence 888887544333 345678888864322 1211121 22332 1 1 11222222211 Q ss_pred ccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhh Q lcl|Aclame:pro 205 GAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQT 284 (527) Q Consensus 205 g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~ 284 (527) .-++|++-.... . ....-.++| --=|+|+-...+++...|.|.|+.++..+..|.+- T Consensus 212 --------~~hPgd~~~~~~--~---------~~~~~~rvp----a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y 268 (505) T protein:vir:96 212 --------VNHPGDNSYCYH--Y---------AGQTYERVP----ADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEY 268 (505) T ss_pred --------ecCCCccccccc--c---------ccccccccC----HhHhhhhhcccCCccccCcchHHHHHHHHHHHhHH Confidence 111111000000 0 000000111 11278888888899999999999999999999666 Q ss_pred HHHHHHHHHHhCCce-EEeccCCC-----cCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 285 MTDEDLIMVFGGLGF-YATDSAPP-----RDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQ 358 (527) Q Consensus 285 lsd~~~i~~~~g~P~-~~~~g~~~-----~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~ 358 (527) ..-+-......+.=. ++.+..+. .+..|+ ....+.||+|..|.++-++..++.....+.|.+++..+++.|.. T Consensus 269 ~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~-~~~~l~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iaa 347 (505) T protein:vir:96 269 RKSEMIAAELGAKKVGFYEQDPEAYDQPPEDDQGE-IVEEVEAGTYQLLPYGIRFKEHKIDHPHTNFGAFVKSSLRGVAA 347 (505) T ss_pred HHHHHHHHHHhhhheeeeecCCccCCCccccccCc-cccccCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHh Confidence 555555555555433 33322111 222333 34679999999999999999999765678999999999999999 Q ss_pred hhcCchhhc-ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcccccccceeEEEEe Q lcl|Aclame:pro 359 TKGIPDIAV-GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQ-FFYNLVTQWLPAYEGVGIDDADKKLTVTITF 436 (527) Q Consensus 359 vs~tP~va~-G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q-~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w 436 (527) ..++|--.+ | |-+.+ |=.|.+..+.+.-..++++|-.+...+-| +++.++...+.+. .+..-.....-+..|.| T Consensus 348 glgi~ye~lt~--D~s~~-nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G-~i~~p~~~~~~~~~~~w 423 (505) T protein:vir:96 348 GMGPAYNRLAH--DLEGV-NFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMSLLTQ-ALPLNMVDIDRLSQYAF 423 (505) T ss_pred hcCCCHHHHhc--ccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcCCCCccchhhceeee Confidence 999996544 5 54433 66688988888888888887665543333 3333333222221 11000111112345666 Q ss_pred CCCCC--CCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC Q lcl|Aclame:pro 437 RDPKP--VNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP 514 (527) Q Consensus 437 ~d~lP--~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~ 514 (527) -.|-- .|..++++..+..+.+|+.|+++.+++. |.+| ++-++++..+.+.. ++.-+ .+........++.. T Consensus 424 ~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~----G~D~-~~v~~q~a~e~~~~--~~~Gl-~~~~~~~~~~~~~~ 495 (505) T protein:vir:96 424 QPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAA----GDDP-EDVFDEIAWEEQLM--RDKGV-NPTPPEQESKDATT 495 (505) T ss_pred ccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc----CCCH-HHHHHHHHHHHHHH--HHcCC-CCCCCCCCCCCCCC Confidence 44432 5999999999999999999999998865 4333 44444433333322 11111 11111112222222 Q ss_pred cccccccCCC Q lcl|Aclame:pro 515 DEEDDQALNG 524 (527) Q Consensus 515 d~~~~~~~~~ 524 (527) +++++.+.+. T Consensus 496 ~~~~~~~~d~ 505 (505) T protein:vir:96 496 DEEDDSASDD 505 (505) T ss_pred CCCCCCCCCC Confidence 3333333333 No 89 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=99.73 E-value=1.7e-16 Score=107.09 Aligned_cols=429 Identities=13% Similarity=0.088 Sum_probs=233.4 Q ss_pred CC--CChhhhhhhhHHhh-------------cccCCCCC--------CChHHHHHHHHHH-HHHHHhcCChhheEeeecC Q lcl|Aclame:pro 1 MG--QDKRQYGSTQQLRA-------------GEANFPNA--------VTDFDKARLASYR-LYEDMYLTNTSDYQVILRG 56 (527) Q Consensus 1 m~--~~~~qy~~~~~~~~-------------~~~~~~~~--------v~~~d~~Rl~aY~-~~~~~y~~~~~~~~~i~~g 56 (527) || +.+..|....+.-. |..-||.+ .....++|++.++ .|++|. T Consensus 14 m~V~~~hp~y~a~~~~W~~~~d~g~~~~k~~g~~YLPk~~~~~~~~~~d~~y~~~~~~~~~~y~~~~------------- 80 (488) T protein:vir:96 14 MLTPIYHPDYLVNAPQWLRNLDCVMDNIKRKKQTYLPNLGAIPPEAKTDPKVTALAAKIEKDWEDLT------------- 80 (488) T ss_pred ecccccCHHHHHHhhhhhHhhhhhhHHHHHhhhhcCCCCCCccccccCcchhhhhhccchhhhHhhh------------- Confidence 66 55667766554432 12222221 1111122222211 122222 Q ss_pred CcccccccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHH-----hcCchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 57 GDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFD-----RENWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 57 ~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~-----~e~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) .++..|.|-.+..+++.++.+ .-.+-.++.+... .|..|.+ -.+|++-+++.-+.++.-|=+...|- T Consensus 81 ----~~rA~~~n~~~~tl~~l~G~v-frk~p~~~~~~~~---~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD 152 (488) T protein:vir:96 81 ----WRLANYVNIVNPTMNAITGAV-MRREPEFDTMDNP---VLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWLVR 152 (488) T ss_pred ----hhccccCchhHHHHHHhcchh-hccCceeccCCcH---HHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEe Confidence 235678888889999888877 4333334433222 2444544 23378889999999999998888888 Q ss_pred ecCC-------CCCccceEEEEEccceEEEEecC--CCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCcccc Q lcl|Aclame:pro 132 GDDE-------KDEGSRLSLHEVDPSTYFPYEDP--RYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPV 202 (527) Q Consensus 132 ~d~~-------k~~~~r~~i~~vdP~~~fp~~d~--d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~ 202 (527) +.++ |..+.||.|..+.|..+.=-.-. ++..+++-|-|-..+...|+.....+ ..|+..+.. T Consensus 153 ~P~~~~T~ade~~~~~rPy~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~----~~~~~~~l~----- 223 (488) T protein:vir:96 153 SHPESATMADWNKGKKLPTAAFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDGGTYVSK----QRLINHRLV----- 223 (488) T ss_pred cCCCcCCHHHHHHhcCCcEEEEechhhhcCcceeccCCceeeEEEEEEEEEEeccCCCcccc----eEEEEEEEE----- Confidence 8642 22355899999999997654222 23334555544332333332211111 011111111 Q ss_pred CCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHH Q lcl|Aclame:pro 203 PGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVN 282 (527) Q Consensus 203 ~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn 282 (527) .|..... .++-++|.. .+.- +..--.++++||+|.+.... ....-|.+-|.+|-.|--+.- T Consensus 224 -~g~~~v~--~~~~~~~~~---------e~~~------~~~g~~~l~~IP~v~~~~~~-~~~~~~~pPLldLA~lnl~Hy 284 (488) T protein:vir:96 224 -DGLCEFQ--EVTDDEYSD---------EWTP------VLINSKQSDTIPFFLASSQS-NEWCIDSTPLTSLAEISLSIY 284 (488) T ss_pred -CcEEEEE--EEecCCccc---------ceEe------ecCCCcccCeeEEEEEecCC-CCCCCCCCchHHHHHHHHHHH Confidence 1211111 111111110 0000 01113378899999996653 234447788999999999999 Q ss_pred hhHHHHHHHHHHhCCceEEeccCCCc-CCCCcccceecCCCeeEecC---CCCceEEeccccChHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 283 QTMTDEDLIMVFGGLGFYATDSAPPR-DSRGNMVPWTISPLGMVEHG---QNNKIYRVNGVASLEP-SQTHMNKAEEAMQ 357 (527) Q Consensus 283 ~~lsd~~~i~~~~g~P~~~~~g~~~~-d~~G~~~p~~v~pg~~~el~---~~~k~~~ld~~~~la~-~~~~~d~L~~~l~ 357 (527) +.-||..-|+.+.+.|+.++.+.... +...++.+. +.+..|.++ +.|.+..+.- +.++ .+++|+.|.+++. T Consensus 285 ~~ssd~~~il~~~~~p~lv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~g~~~~~e~--~~~~l~~~~l~~l~~qm~ 360 (488) T protein:vir:96 285 VMNAYSNKAMILANEAKWMVDMGDMNKTMASEMNPL--GFTLAGRMPYYVKNGDVKVIQA--QFSPETENKVEKLFEQAV 360 (488) T ss_pred hhhhHHHHHHHhcCCceeeeccCCCCcccccccccc--eeeecccccccccCCceeecCC--chhHHHHHHHHHHHHHHH Confidence 99999999999999998876432211 113333333 333333433 5677777763 3433 4899999999886 Q ss_pred H-hhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEE- Q lcl|Aclame:pro 358 Q-TKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTIT- 435 (527) Q Consensus 358 ~-vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~- 435 (527) . .+++.. .+++.|+.+.++..+.-.|....+-..+...+.+++ +++.+|+ ++..... .+..++|. T Consensus 361 ~~Ga~l~~-------~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l-~~~A~w~----g~~~~~~-~~~~~~~~i 427 (488) T protein:vir:96 361 KVGASLFT-------QQSNETATGAAIRSGSSTASMATLGNNVEDTVRNML-RFIMRYF----EGTNLYV-NPDELVFKL 427 (488) T ss_pred HHhHhhcc-------CCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHHHHHc----CCCCCCc-CccceEEEe Confidence 6 444442 234568888887665544444444444444555555 3445554 3332211 11223332 Q ss_pred eCCCCCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccc Q lcl|Aclame:pro 436 FRDPKPVN-NEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGA 505 (527) Q Consensus 436 w~d~lP~D-~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~ 505 (527) -.+..+.. ..+.+++.++++++|.||.+|..+.|.+.| .=.++.+.+++.++++.. ..|- T Consensus 428 n~dF~~~~ld~~~~~al~~~~~~G~Is~~t~~~~L~~~g-vl~~d~~~e~~~~~ie~~---------g~~~ 488 (488) T protein:vir:96 428 NRDYFDVEVNPQMLQVAYAAMMEGNLPQVSWFELLKRAR-VVRGDMSKEEFDEHIAEL---------GFGM 488 (488) T ss_pred ccCCCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCC-cCCccCCHHHHHHHHhhc---------CCCC Confidence 22222222 367899999999999999999999998864 222444555665666532 2221 No 90 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=99.69 E-value=2e-16 Score=106.67 Aligned_cols=505 Identities=12% Similarity=0.010 Sum_probs=231.7 Q ss_pred CChhhhhhhhHHhhcccCC---CCCCCh-HHHHHHHH---------------HHHHHHHhcCChhheEeeecCCcccccc Q lcl|Aclame:pro 3 QDKRQYGSTQQLRAGEANF---PNAVTD-FDKARLAS---------------YRLYEDMYLTNTSDYQVILRGGDEGDQR 63 (527) Q Consensus 3 ~~~~qy~~~~~~~~~~~~~---~~~v~~-~d~~Rl~a---------------Y~~~~~~y~~~~~~~~~i~~g~d~~~~~ 63 (527) ..||||-|..+-+--...= -+.-.. ...+|+.. .+.=.+||.|++|.= .++..--+.++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~d~~fy~G~Qw~~-~~~~~l~~~g~p 79 (711) T protein:vir:10 1 MAKKQKKSRVEQLYAKKAKVYAKNNDDDRALLATARERARDGATYWKDNWEAAEDDLKFLGGEQWPS-QVRTERELEQRP 79 (711) T ss_pred CCcccccccccchhHHHHHhcccCcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCCCH-HHHHHHHhcCCC Confidence 5688888876644211110 011111 11112221 123368999998751 112222345678 Q ss_pred cccCCchhHHHHhhhhhhccCc-cc--cc-----------------------cCcchhHHHHH----HHHHHhcCchhhH Q lcl|Aclame:pro 64 PIYVPNGEKLIEAKMRFLGQGL-KW--EF-----------------------SKKDAKVDDAI----RVLFDRENWEQKF 113 (527) Q Consensus 64 ~~~~p~~~k~v~~~~~~Lg~~~-~~--~i-----------------------~~~~~~v~~~l----r~w~~~e~l~~k~ 113 (527) ++-++-.+.+|++++++--.+. ++ .+ +.+++++.+.| +.+.+.++....+ T Consensus 80 ~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~ 159 (711) T protein:vir:10 80 CLVNNVLPTFVDQVLGDQRQNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVFTGLIKNIEYNCDAETEY 159 (711) T ss_pred cEEEcchHHHHHHHhhhHhhCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHHHHHHHHHHHhcChhHHH Confidence 8888889999999999883222 11 11 12233343333 4444555677778 Q ss_pred HHHhHhhhhcccEEEEEEecCCC--CCccceEEEEE-ccceEEE---EecCC--CCCceEEEEEEEeeeCCCCccceee- Q lcl|Aclame:pro 114 ESLKRWTEIRGDYVLLLIGDDEK--DEGSRLSLHEV-DPSTYFP---YEDPR--YPGQVLGVYLVDEYPHPDSEKKNEK- 184 (527) Q Consensus 114 ~~~~r~a~~~GDav~~i~~d~~k--~~~~r~~i~~v-dP~~~fp---~~d~d--~~~~v~~vh~a~~~~~pd~~~~~~k- 184 (527) -.+-..+++-|-||+.|.+|... +-...|.|+.+ ||..+|. ...+| +...+...+ |-+.++-+...- T Consensus 160 s~af~d~~~~G~G~~ev~~d~~~~d~~~~e~~i~~v~~p~~v~~Dp~a~~~D~sDar~~~~~~----~~~~~~~~~~yp~ 235 (711) T protein:vir:10 160 DIAFQGAVESGMGYLRVRSDYLADDSFEQDLIIEAIQNQFSVTIDPDAKKRDRSDMNWCLIDD----TMSKEKFKALYPD 235 (711) T ss_pred HHHHHHhhhcCcceEEEEecccCCCCCCCCeEEeeecChhheeeCccccccChhhhcceeeee----cCCHHHHHHhCCc Confidence 88888999999999999887422 11236778777 7987664 22233 333344443 333332211100 Q ss_pred eee---eeeeeeeecCCccccCCccceeeec-----------cccccc---cccc---------cc------ccccccce Q lcl|Aclame:pro 185 CAR---VQKYMKTLDDDGKPVPGGAIKYTEE-----------LYEPGK---WDDR---------PE------SPLEPDDI 232 (527) Q Consensus 185 ~~r---r~~~~~~~~~~g~p~~~g~i~~~~~-----------~~~~g~---wd~~---------~~------~~~~~~~~ 232 (527) .+. ...+.-.+..|.++ .+|..-++ .+..+. |+.. .+ .++....+ T Consensus 236 ~a~~~~~~~~~~~~~~~~~~---~~vrv~E~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~v 312 (711) T protein:vir:10 236 ATAEPVYEDSVADYDTWFTE---KSVRVSEYFTREPVIREIALLSDGRSFWLDALEDIVDELLEAGISIVRTRKVKTFKT 312 (711) T ss_pred hhhhhhhcccccccCcccCc---ceeeEEEEEeeeeeeeEEEeecCCceeccCcchhHHHHHHhcCchhhhhhhhceeeE Confidence 000 00000000001100 11111000 000000 1100 00 00001111 Q ss_pred --eeeccCccc-ccccccccccceEeeCCC--CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe-ccCC Q lcl|Aclame:pro 233 --KKLSTLTEE-EPLPEQITTLPVFHFRGH--PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT-DSAP 306 (527) Q Consensus 233 --~~~~~~~~e-~~l~~pi~~iPVV~~pN~--~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~-~g~~ 306 (527) ...+....+ .+-|.|-+++|+|+|-.. +.+++..+.+-+.+++.+++.+|++.|.+..++..++++.+.. .|.- T Consensus 313 ~~~~~~G~~~L~~~~p~~~~~~P~vp~~g~r~~~d~~~~~~G~vr~~~d~Qr~~N~~~s~~~~~l~~~~~~~~~~~~gai 392 (711) T protein:vir:10 313 YWRKITGANVLEGPVEIPSTTIPVIPVWGKSLIIKKKEIFRSIIRHSKDAQRMANYWDSAATETVALAPKAPFIGSEGNV 392 (711) T ss_pred EEEEEecceeecCCCCCCCCcccEEEEeeeeeccccccccchhhhhhhhhHHHHHHHHHHHHHHHHhcCCCceeecCccc Confidence 112222222 334566688999987543 2356666677899999999999999999999999999976544 3332 Q ss_pred CcCCCCcccceecCCCeeEecCCCC----ceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHH Q lcl|Aclame:pro 307 PRDSRGNMVPWTISPLGMVEHGQNN----KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALD 382 (527) Q Consensus 307 ~~d~~G~~~p~~v~pg~~~el~~~~----k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALq 382 (527) .+.+.....-...||.++.+.+++ ++.......-..++.+-++.....|.+++++...++|. .+++.||.|+. T Consensus 393 -~~~~~~~~e~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~tGi~~~~~G~--~~n~~Sg~ai~ 469 (711) T protein:vir:10 393 -EGREDEWEQANTKNFSLLTYIPQYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKSTMGMYDASLGA--MGNETSGRAII 469 (711) T ss_pred -CChHHHHHhccccCCCeeEecccccCcCCccccCCCCCCHHHHHHHHHHHHHHHHHhCCChHHcCC--CccchHHHHHH Confidence 121111111114467776665443 67766644445678888888899999999999999995 45678999998 Q ss_pred HHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhccc-cc-cccee-------------------------- Q lcl|Aclame:pro 383 LKLSA-ILSSCAEQELELKSVLKQFFYNLVTQWLPAYE--GVGID-DA-DKKLT-------------------------- 431 (527) Q Consensus 383 l~~~P-Llakv~~krl~~~~~~~q~~~~li~~~L~~~e--~v~~~-~~-~~~~~-------------------------- 431 (527) ....- ...... .---+.....++++.++.++-.-|. .+..+ +. ....+ T Consensus 470 ~~q~qg~~~l~~-~~dn~~~~~~~~g~~ll~li~~~~~~er~~rI~ged~~~~~v~ln~~~~~~~~G~~~~~nDi~~g~~ 548 (711) T protein:vir:10 470 ARQRQGDRGSFA-FIDNLTKSIRRVGKILVEMIPHIYDTERVVRLKFPDETEDFVKLNEQIFDEESGEWVTIHDLNVQKY 548 (711) T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCcceEEecccccccccccceeeeccceeee Confidence 55442 211111 1111223343444444433332231 11111 11 11112 Q ss_pred -EEEEeCCCCCCCHHHHHHHHHHHHhcCCccH--HHHHHHHHHhcCCCCchHHHHHHHHHHHHH---------------- Q lcl|Aclame:pro 432 -VTITFRDPKPVNNEKRFAQLLELWEAGLIPA--KKLTEELSKIMGFELTEEDFRQATEDKKTQ---------------- 492 (527) Q Consensus 432 -v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~--~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~---------------- 492 (527) |.|.=++..|+-+++-++.++.+.+ .++. ..++..+.+++.. +-.+ ++.++++.. T Consensus 549 Dv~i~~~p~~~s~r~~~~~~l~ql~~--~~p~~~~~~~~~il~~~d~-p~~~---el~e~lr~~~~~~~~~~~~~~~~qq 622 (711) T protein:vir:10 549 DVVVTTGPAFATQRIEAAEAMIQFAQ--AVPSAAAVMADLIAQNMDW-PGAD---VIAERLKKIVPPNVLSKDEREAIEE 622 (711) T ss_pred EEEEeeccCchhHHHHHHHHHHHHHh--hcchhhhHHHHHHHHhcCC-CCHH---HHHHHHHhhcCcccCcchhhhHHHH Confidence 2223334555555555555444432 1211 1122222333321 1111 112222110 Q ss_pred -----HHHHH----HhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 493 -----GIAQA----EAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 493 -----a~~~~----aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +.+.. +....-...+-++.-.-..+-++.. ..+ T Consensus 623 ~~~e~qq~~~~~q~~~~~~q~~~~qa~ae~~~Aqae~~q--a~~ 664 (711) T protein:vir:10 623 DMPEQTEPTPEQQVEMAKSQADMAQAEADTAQAQADMLK--AQL 664 (711) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH Confidence 00000 0000000000000000000000000 000 No 91 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=99.59 E-value=9.4e-14 Score=92.01 Aligned_cols=482 Identities=11% Similarity=0.043 Sum_probs=213.5 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHH------HHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYR------LYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~------~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) |-++++-=......+.+..+.-+.+-..- ..+|+ .+.+||.++... .+- +.....+-.+..|..+..| T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~w---~~~~~~~~~~~~~~~y~~~~~~~--~~~-~~~~~~rs~~~~~~v~~~v 88 (651) T protein:vir:80 15 YDETHDVSSYVKKEYKRFCDARQVCEETW---LEAWGMYLSTPEAQDYLRDQVLR--SVG-DVNADWRHKITTGKAFEAI 88 (651) T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhH---HHHHHhhcccHHHHHhhcccccc--ccC-CCCCCCCccccChhHHHHH Confidence 33333322222333332222111111111 12332 456777766332 111 1111122346778888999 Q ss_pred HhhhhhhccCc-------cccccCcchh----HHHHHHHHHH----hcCchhhHHHHhHhhhhcccEEEEEEecCCC--- Q lcl|Aclame:pro 75 EAKMRFLGQGL-------KWEFSKKDAK----VDDAIRVLFD----RENWEQKFESLKRWTEIRGDYVLLLIGDDEK--- 136 (527) Q Consensus 75 ~~~~~~Lg~~~-------~~~i~~~~~~----v~~~lr~w~~----~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k--- 136 (527) ++.+..|.-.+ .+.+. ++++ .++.+..++. ++++..-+..+-++|++.|.||.++.||... T Consensus 89 e~~~~~l~~~~~~~~~~~~~~p~-~~~d~a~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~l~~G~~i~kv~we~~~~~~ 167 (651) T protein:vir:80 89 ETIHAYLMSATFPNKNWFDVVPA-KPGQDNLLVSRLIKRYVQDKLTEGKFRAAYANFLRQLLITGNSVLALPWRVETAEV 167 (651) T ss_pred HHHHHHHHHhhcCCCceeEeccC-CchhHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHhhcccCceEEEEeecceeeee Confidence 99888775321 11121 1222 2333444443 5567777778889999999999999998431 Q ss_pred ------------CC------------ccceEEEEEccceEEEEe-cCC--CCCceEEEEEEEeeeCCCCccce-----ee Q lcl|Aclame:pro 137 ------------DE------------GSRLSLHEVDPSTYFPYE-DPR--YPGQVLGVYLVDEYPHPDSEKKN-----EK 184 (527) Q Consensus 137 ------------~~------------~~r~~i~~vdP~~~fp~~-d~d--~~~~v~~vh~a~~~~~pd~~~~~-----~k 184 (527) ++ -.+|+|+.|+|..+|+-. .++ +...+.+.+ +...+-.... +. T Consensus 168 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~~dp~a~~~~d~~~v~~~~----~t~~~l~~l~~~g~~~~ 243 (651) T protein:vir:80 168 KKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCFYDPNVTDPNRGAFIRKLT----KTKADILNLLSEGYYYG 243 (651) T ss_pred ehheeccccccccccceeeeccceeeeceeEEEEecHHHeeecCCCcCccccceeeeee----eeHHHHHHHHhcccccc Confidence 00 025788999998877632 111 111111111 1111100000 00 Q ss_pred eeeeeeeeeeecC------------CccccC----CccceeeecccccccccccccccccccceeeeccCccc-cccccc Q lcl|Aclame:pro 185 CARVQKYMKTLDD------------DGKPVP----GGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLPEQ 247 (527) Q Consensus 185 ~~rr~~~~~~~~~------------~g~p~~----~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~~p 247 (527) +.-.....+...+ ++.... .-.|...+ +|. .++.+... ...+.....+..+ ....+| T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E-~~~--~~d~e~~~---~~~~~v~~~g~~il~~~~~~ 317 (651) T protein:vir:80 244 VDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLE-YWG--DIHLENKT---YHDVVVTIMGNEVLRFEQNP 317 (651) T ss_pred hhhHHHHhhhccccccCCccccccccCCCccccccccceEEEE-EEE--EeeccCCc---eEEEEEEEcCcEEecccccC Confidence 0000000000000 000000 01122222 232 23322211 1112333334333 223444 Q ss_pred c-cccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEe Q lcl|Aclame:pro 248 I-TTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVE 326 (527) Q Consensus 248 i-~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~e 326 (527) . +..|+++++-.+.+++.||.|-++.+++.+..||+....+...+..+.+|++.... |+--++.++..+||.+|. T Consensus 318 ~~~~~Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~~~~~~~v~~----d~~~~~~~l~~~pg~vi~ 393 (651) T protein:vir:80 318 YWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELAIDQMYTLRS----DGLLQPEDVYTEPGKVFL 393 (651) T ss_pred CCCCCCeeeecceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHHhCCcEEecC----CccccHHHhhcCCCceEE Confidence 3 46799999999999999999999999999999999999999999999999866521 122234445567999998 Q ss_pred cCCCCceEEec-cccChHHHHHHHHHHHHHHHHhhcCchhhccccccc----ccccHHHHHH-HhccHHHHHHHHHHHHH Q lcl|Aclame:pro 327 HGQNNKIYRVN-GVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAA----VAESGIALDL-KLSAILSSCAEQELELK 400 (527) Q Consensus 327 l~~~~k~~~ld-~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s----~a~SG~ALql-~~~PLlakv~~krl~~~ 400 (527) .+..+.+..+. .+.+.....+-++.|...+.+.++++....|-...+ .| +|+++.. +.+-++..+-+ ++. . T Consensus 394 ~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~~~g~~~~~~~~~TA-teI~~~~~~~~~~l~~v~~-~l~-~ 470 (651) T protein:vir:80 394 VSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNYVGANAARSGERVTA-AEVAAVREAGGNRLSGIHK-HIE-E 470 (651) T ss_pred ecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChHHhCCCccchhhccH-HHHHHHHHHHHHHHHHHHH-HHH-H Confidence 88888777664 345667778889999999999999999998843221 12 4444432 12222221111 110 0 Q ss_pred HHHHHHHHHHHHHHHhhh-h--h-hcccccc----cc-------eeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHH Q lcl|Aclame:pro 401 SVLKQFFYNLVTQWLPAY-E--G-VGIDDAD----KK-------LTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKL 465 (527) Q Consensus 401 ~~~~q~~~~li~~~L~~~-e--~-v~~~~~~----~~-------~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta 465 (527) ..+..+++.++ .++.+| + . +...+.. .. +++.+. ..+....+..+....+ ..+ T Consensus 471 e~l~pl~~r~l-~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~dl~~~~~---iv~~g~~~~~~r~~~~--------~~l 538 (651) T protein:vir:80 471 TSLLVLLEKVM-HLVQQFTDQPGMVRVAGDEAGAYEYYELDVEDLQKEVR---LVPIGSDHVIERKQYI--------EDR 538 (651) T ss_pred HHHHHHHHHHH-HHHHHhcCcccceeecccccccccccccCccceeeeee---eeeccHHHHHHHHHHH--------HHH Confidence 12222232221 222222 1 0 1111100 00 001100 1122222222111111 001 Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 466 TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 466 ~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) .. +...++..|......+....++. ... ..|.... +.-..+.+.-...+++|- T Consensus 539 ~~-~~q~~~~~p~~~~~~~~~~~~~~----l~~---~~g~~~~-~~~l~~~~q~~~~~~~~~ 591 (651) T protein:vir:80 539 LT-FIQAVAQVPEMGQLVDYKRILVD----LLQ---HWGFEEP-EAYLKQQDQQAPANPQEA 591 (651) T ss_pred HH-HHHhhccCCccchhhhHHHHHHH----HHH---HcCCCCc-HHhcCCCccchhhhhhHH Confidence 11 11222233333322222211111 111 1110000 000000000000111110 No 92 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=99.47 E-value=6.4e-13 Score=87.42 Aligned_cols=479 Identities=11% Similarity=0.079 Sum_probs=233.4 Q ss_pred hhcccCCCC-C----CC-hHHHHHH--------------HHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 15 RAGEANFPN-A----VT-DFDKARL--------------ASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 15 ~~~~~~~~~-~----v~-~~d~~Rl--------------~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) .+-+++.+. - +. .-+++-+ +..+.-.+||.|++|+ ..++..--+.++.++-++-.+.+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~-~~~~~~l~~~g~p~~~~N~i~~~v 79 (714) T protein:vir:27 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP-PEVLQVLKDRGQPMTIHNLIAPTV 79 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC-HHHHHHHHhcCCCcEEeccHHHHH Confidence 221111111 1 11 1111111 2233567899999885 233323334568888899999999 Q ss_pred HhhhhhhccCcc---ccccCcc---hhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEE Q lcl|Aclame:pro 75 EAKMRFLGQGLK---WEFSKKD---AKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) Q Consensus 75 ~~~~~~Lg~~~~---~~i~~~~---~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i 144 (527) ++++++--.+.. +.+..++ +++ ...++.|.+.++.....-.+-..+++-|=||+.+++|+. ..+..|.| T Consensus 80 ~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d-~~~~~i~i 158 (714) T protein:vir:27 80 DGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSD-PFGPEFKV 158 (714) T ss_pred HHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccC-CCCCCeEE Confidence 999999843331 1232222 222 455577888888998899999999999999998888864 35568999 Q ss_pred EEEccceEEEE-----ecCCCCCceEEEEEEEeeeCCCCcccee--eee---e--------------------------- Q lcl|Aclame:pro 145 HEVDPSTYFPY-----EDPRYPGQVLGVYLVDEYPHPDSEKKNE--KCA---R--------------------------- 187 (527) Q Consensus 145 ~~vdP~~~fp~-----~d~d~~~~v~~vh~a~~~~~pd~~~~~~--k~~---r--------------------------- 187 (527) +.+||..+|.- .|..+...+... .|-+.+.-+... ++. + T Consensus 159 ~~v~p~~v~~Dp~a~~~D~sDar~~~~~----~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (714) T protein:vir:27 159 STVSRNEVFWDWLSREADLSDCRWLMRR----RWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEE 234 (714) T ss_pred EecchhheeeccccccCChhhccceeee----ecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhh Confidence 99999998763 222223223322 233322211100 000 0 Q ss_pred eeeeeeeecCCccccCCccceeeeccccc-----------cc---cccccc-------------ccccccceee--eccC Q lcl|Aclame:pro 188 VQKYMKTLDDDGKPVPGGAIKYTEELYEP-----------GK---WDDRPE-------------SPLEPDDIKK--LSTL 238 (527) Q Consensus 188 r~~~~~~~~~~g~p~~~g~i~~~~~~~~~-----------g~---wd~~~~-------------~~~~~~~~~~--~~~~ 238 (527) ...|.....++..+ ...+|...++.|+- |+ ++..+. ......++++ .+.. T Consensus 235 ~~~~~~~~~~~~~~-~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~ 313 (714) T protein:vir:27 235 YQSWDRQQNEWLQR-ERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGP 313 (714) T ss_pred hccccccccccccc-cccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecC Confidence 00000000000000 01122222222110 00 111000 0011111211 1222 Q ss_pred ccc--ccccccccccceEeeCCCC--CCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcc Q lcl|Aclame:pro 239 TEE--EPLPEQITTLPVFHFRGHP--IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNM 314 (527) Q Consensus 239 ~~e--~~l~~pi~~iPVV~~pN~~--~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~ 314 (527) ..+ .+.|.|.+++|+|.|-... ..+.++| -+-.++..++.+|++.|.+..++ +.+..+...|+.+.+.. +. T Consensus 314 ~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~-~~ 388 (714) T protein:vir:27 314 HFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDN-DL 388 (714) T ss_pred cccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHH-HH Confidence 222 4567777889999776653 3456654 57789999999999999988876 44444555554432210 10 Q ss_pred cceecCCCeeEecCCC--------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 315 VPWTISPLGMVEHGQN--------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 315 ~p~~v~pg~~~el~~~--------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ..---.|+.++.+.++ .+|.......-.+++.+.++.....|.+++++-...+|. .+++.||+|+...-. T Consensus 389 ~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~--~~na~SGvAi~~rq~ 466 (714) T protein:vir:27 389 MEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ--DSGATSGVAISNLVE 466 (714) T ss_pred HHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC--CccchhHHHHHHHHH Confidence 0011346677666543 345555544456668888888899999999999999994 467789999874433 Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhcccc---cc------------------------cceeEEEEe Q lcl|Aclame:pro 387 -AILSSCAEQELELKSVLKQFFYNLVTQWLPAY--EGVGIDD---AD------------------------KKLTVTITF 436 (527) Q Consensus 387 -PLlakv~~krl~~~~~~~q~~~~li~~~L~~~--e~v~~~~---~~------------------------~~~~v~v~w 436 (527) -..+...-.. -+.....++.+.++.++-.-| +++..+. .. ..+-|.|.= T Consensus 467 qg~~~l~~~~D-nl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~ 545 (714) T protein:vir:27 467 QGATTLAEIND-NYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAP 545 (714) T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEee Confidence 1111110000 012223233333333222212 2211111 00 112233455 Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccHHHH---HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWEAGLIPAKKL---TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~aGlls~~ta---~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) ++..|+.+++.++.++.+.+. ++..+. +..+.+.+.. | ..+++.+++.+. .+ ..+... T Consensus 546 ~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~--p--~~~el~~~ir~~----------~~---~~~~~~ 606 (714) T protein:vir:27 546 VQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDV--P--QKQEFVERIRAA----------LG---TPKSPD 606 (714) T ss_pred ccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCC--C--CHHHHHHHHHHH----------cC---CCCCcc Confidence 667777778888888778764 222221 1223344432 1 122233344321 00 111111 Q ss_pred CcccccccC--CCCCC Q lcl|Aclame:pro 514 PDEEDDQAL--NGQPL 527 (527) Q Consensus 514 ~d~~~~~~~--~~~~~ 527 (527) +.....++. .-+++ T Consensus 607 ~~~~e~q~~~~~~q~~ 622 (714) T protein:vir:27 607 EMTPEEQEVAAQQQAL 622 (714) T ss_pred ccchhhHHHHHHHHHH Confidence 100000000 00000 No 93 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=99.47 E-value=6.4e-13 Score=87.42 Aligned_cols=479 Identities=11% Similarity=0.079 Sum_probs=233.4 Q ss_pred hhcccCCCC-C----CC-hHHHHHH--------------HHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 15 RAGEANFPN-A----VT-DFDKARL--------------ASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 15 ~~~~~~~~~-~----v~-~~d~~Rl--------------~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) .+-+++.+. - +. .-+++-+ +..+.-.+||.|++|+ ..++..--+.++.++-++-.+.+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~-~~~~~~l~~~g~p~~~~N~i~~~v 79 (714) T protein:vir:99 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP-PEVLQVLKDRGQPMTIHNLIAPTV 79 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC-HHHHHHHHhcCCCcEEeccHHHHH Confidence 221111111 1 11 1111111 2233567899999885 233323334568888899999999 Q ss_pred HhhhhhhccCcc---ccccCcc---hhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEE Q lcl|Aclame:pro 75 EAKMRFLGQGLK---WEFSKKD---AKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) Q Consensus 75 ~~~~~~Lg~~~~---~~i~~~~---~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i 144 (527) ++++++--.+.. +.+..++ +++ ...++.|.+.++.....-.+-..+++-|=||+.+++|+. ..+..|.| T Consensus 80 ~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d-~~~~~i~i 158 (714) T protein:vir:99 80 DGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSD-PFGPEFKV 158 (714) T ss_pred HHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccC-CCCCCeEE Confidence 999999843331 1232222 222 455577888888998899999999999999998888864 35568999 Q ss_pred EEEccceEEEE-----ecCCCCCceEEEEEEEeeeCCCCcccee--eee---e--------------------------- Q lcl|Aclame:pro 145 HEVDPSTYFPY-----EDPRYPGQVLGVYLVDEYPHPDSEKKNE--KCA---R--------------------------- 187 (527) Q Consensus 145 ~~vdP~~~fp~-----~d~d~~~~v~~vh~a~~~~~pd~~~~~~--k~~---r--------------------------- 187 (527) +.+||..+|.- .|..+...+... .|-+.+.-+... ++. + T Consensus 159 ~~v~p~~v~~Dp~a~~~D~sDar~~~~~----~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (714) T protein:vir:99 159 STVSRNEVFWDWLSREADLSDCRWLMRR----RWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEE 234 (714) T ss_pred EecchhheeeccccccCChhhccceeee----ecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhh Confidence 99999998763 222223223322 233322211100 000 0 Q ss_pred eeeeeeeecCCccccCCccceeeeccccc-----------cc---cccccc-------------ccccccceee--eccC Q lcl|Aclame:pro 188 VQKYMKTLDDDGKPVPGGAIKYTEELYEP-----------GK---WDDRPE-------------SPLEPDDIKK--LSTL 238 (527) Q Consensus 188 r~~~~~~~~~~g~p~~~g~i~~~~~~~~~-----------g~---wd~~~~-------------~~~~~~~~~~--~~~~ 238 (527) ...|.....++..+ ...+|...++.|+- |+ ++..+. ......++++ .+.. T Consensus 235 ~~~~~~~~~~~~~~-~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~ 313 (714) T protein:vir:99 235 YQSWDRQQNEWLQR-ERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGP 313 (714) T ss_pred hccccccccccccc-cccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecC Confidence 00000000000000 01122222222110 00 111000 0011111211 1222 Q ss_pred ccc--ccccccccccceEeeCCCC--CCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcc Q lcl|Aclame:pro 239 TEE--EPLPEQITTLPVFHFRGHP--IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNM 314 (527) Q Consensus 239 ~~e--~~l~~pi~~iPVV~~pN~~--~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~ 314 (527) ..+ .+.|.|.+++|+|.|-... ..+.++| -+-.++..++.+|++.|.+..++ +.+..+...|+.+.+.. +. T Consensus 314 ~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~-~~ 388 (714) T protein:vir:99 314 HFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDN-DL 388 (714) T ss_pred cccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHH-HH Confidence 222 4567777889999776653 3456654 57789999999999999988876 44444555554432210 10 Q ss_pred cceecCCCeeEecCCC--------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 315 VPWTISPLGMVEHGQN--------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 315 ~p~~v~pg~~~el~~~--------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ..---.|+.++.+.++ .+|.......-.+++.+.++.....|.+++++-...+|. .+++.||+|+...-. T Consensus 389 ~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~--~~na~SGvAi~~rq~ 466 (714) T protein:vir:99 389 MEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ--DSGATSGVAISNLVE 466 (714) T ss_pred HHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC--CccchhHHHHHHHHH Confidence 0011346677666543 345555544456668888888899999999999999994 467789999874433 Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhcccc---cc------------------------cceeEEEEe Q lcl|Aclame:pro 387 -AILSSCAEQELELKSVLKQFFYNLVTQWLPAY--EGVGIDD---AD------------------------KKLTVTITF 436 (527) Q Consensus 387 -PLlakv~~krl~~~~~~~q~~~~li~~~L~~~--e~v~~~~---~~------------------------~~~~v~v~w 436 (527) -..+...-.. -+.....++.+.++.++-.-| +++..+. .. ..+-|.|.= T Consensus 467 qg~~~l~~~~D-nl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~ 545 (714) T protein:vir:99 467 QGATTLAEIND-NYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAP 545 (714) T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEee Confidence 1111110000 012223233333333222212 2211111 00 112233455 Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccHHHH---HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWEAGLIPAKKL---TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~aGlls~~ta---~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) ++..|+.+++.++.++.+.+. ++..+. +..+.+.+.. | ..+++.+++.+. .+ ..+... T Consensus 546 ~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~--p--~~~el~~~ir~~----------~~---~~~~~~ 606 (714) T protein:vir:99 546 VQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDV--P--QKQEFVERIRAA----------LG---TPKSPD 606 (714) T ss_pred ccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCC--C--CHHHHHHHHHHH----------cC---CCCCcc Confidence 667777778888888778764 222221 1223344432 1 122233344321 00 111111 Q ss_pred CcccccccC--CCCCC Q lcl|Aclame:pro 514 PDEEDDQAL--NGQPL 527 (527) Q Consensus 514 ~d~~~~~~~--~~~~~ 527 (527) +.....++. .-+++ T Consensus 607 ~~~~e~q~~~~~~q~~ 622 (714) T protein:vir:99 607 EMTPEEQEVAAQQQAL 622 (714) T ss_pred ccchhhHHHHHHHHHH Confidence 100000000 00000 No 94 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=99.47 E-value=6.4e-13 Score=87.42 Aligned_cols=479 Identities=11% Similarity=0.079 Sum_probs=233.4 Q ss_pred hhcccCCCC-C----CC-hHHHHHH--------------HHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 15 RAGEANFPN-A----VT-DFDKARL--------------ASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 15 ~~~~~~~~~-~----v~-~~d~~Rl--------------~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) .+-+++.+. - +. .-+++-+ +..+.-.+||.|++|+ ..++..--+.++.++-++-.+.+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~-~~~~~~l~~~g~p~~~~N~i~~~v 79 (714) T protein:vir:10 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP-PEVLQVLKDRGQPMTIHNLIAPTV 79 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC-HHHHHHHHhcCCCcEEeccHHHHH Confidence 221111111 1 11 1111111 2233567899999885 233323334568888899999999 Q ss_pred HhhhhhhccCcc---ccccCcc---hhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEE Q lcl|Aclame:pro 75 EAKMRFLGQGLK---WEFSKKD---AKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) Q Consensus 75 ~~~~~~Lg~~~~---~~i~~~~---~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i 144 (527) ++++++--.+.. +.+..++ +++ ...++.|.+.++.....-.+-..+++-|=||+.+++|+. ..+..|.| T Consensus 80 ~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d-~~~~~i~i 158 (714) T protein:vir:10 80 DGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSD-PFGPEFKV 158 (714) T ss_pred HHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccC-CCCCCeEE Confidence 999999843331 1232222 222 455577888888998899999999999999998888864 35568999 Q ss_pred EEEccceEEEE-----ecCCCCCceEEEEEEEeeeCCCCcccee--eee---e--------------------------- Q lcl|Aclame:pro 145 HEVDPSTYFPY-----EDPRYPGQVLGVYLVDEYPHPDSEKKNE--KCA---R--------------------------- 187 (527) Q Consensus 145 ~~vdP~~~fp~-----~d~d~~~~v~~vh~a~~~~~pd~~~~~~--k~~---r--------------------------- 187 (527) +.+||..+|.- .|..+...+... .|-+.+.-+... ++. + T Consensus 159 ~~v~p~~v~~Dp~a~~~D~sDar~~~~~----~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (714) T protein:vir:10 159 STVSRNEVFWDWLSREADLSDCRWLMRR----RWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEE 234 (714) T ss_pred EecchhheeeccccccCChhhccceeee----ecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhh Confidence 99999998763 222223223322 233322211100 000 0 Q ss_pred eeeeeeeecCCccccCCccceeeeccccc-----------cc---cccccc-------------ccccccceee--eccC Q lcl|Aclame:pro 188 VQKYMKTLDDDGKPVPGGAIKYTEELYEP-----------GK---WDDRPE-------------SPLEPDDIKK--LSTL 238 (527) Q Consensus 188 r~~~~~~~~~~g~p~~~g~i~~~~~~~~~-----------g~---wd~~~~-------------~~~~~~~~~~--~~~~ 238 (527) ...|.....++..+ ...+|...++.|+- |+ ++..+. ......++++ .+.. T Consensus 235 ~~~~~~~~~~~~~~-~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~ 313 (714) T protein:vir:10 235 YQSWDRQQNEWLQR-ERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGP 313 (714) T ss_pred hccccccccccccc-cccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecC Confidence 00000000000000 01122222222110 00 111000 0011111211 1222 Q ss_pred ccc--ccccccccccceEeeCCCC--CCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcc Q lcl|Aclame:pro 239 TEE--EPLPEQITTLPVFHFRGHP--IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNM 314 (527) Q Consensus 239 ~~e--~~l~~pi~~iPVV~~pN~~--~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~ 314 (527) ..+ .+.|.|.+++|+|.|-... ..+.++| -+-.++..++.+|++.|.+..++ +.+..+...|+.+.+.. +. T Consensus 314 ~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~-~~ 388 (714) T protein:vir:10 314 HFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDN-DL 388 (714) T ss_pred cccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHH-HH Confidence 222 4567777889999776653 3456654 57789999999999999988876 44444555554432210 10 Q ss_pred cceecCCCeeEecCCC--------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 315 VPWTISPLGMVEHGQN--------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 315 ~p~~v~pg~~~el~~~--------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ..---.|+.++.+.++ .+|.......-.+++.+.++.....|.+++++-...+|. .+++.||+|+...-. T Consensus 389 ~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~--~~na~SGvAi~~rq~ 466 (714) T protein:vir:10 389 MEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ--DSGATSGVAISNLVE 466 (714) T ss_pred HHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC--CccchhHHHHHHHHH Confidence 0011346677666543 345555544456668888888899999999999999994 467789999874433 Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhcccc---cc------------------------cceeEEEEe Q lcl|Aclame:pro 387 -AILSSCAEQELELKSVLKQFFYNLVTQWLPAY--EGVGIDD---AD------------------------KKLTVTITF 436 (527) Q Consensus 387 -PLlakv~~krl~~~~~~~q~~~~li~~~L~~~--e~v~~~~---~~------------------------~~~~v~v~w 436 (527) -..+...-.. -+.....++.+.++.++-.-| +++..+. .. ..+-|.|.= T Consensus 467 qg~~~l~~~~D-nl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~ 545 (714) T protein:vir:10 467 QGATTLAEIND-NYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAP 545 (714) T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEee Confidence 1111110000 012223233333333222212 2211111 00 112233455 Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccHHHH---HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWEAGLIPAKKL---TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~aGlls~~ta---~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) ++..|+.+++.++.++.+.+. ++..+. +..+.+.+.. | ..+++.+++.+. .+ ..+... T Consensus 546 ~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~--p--~~~el~~~ir~~----------~~---~~~~~~ 606 (714) T protein:vir:10 546 VQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDV--P--QKQEFVERIRAA----------LG---TPKSPD 606 (714) T ss_pred ccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCC--C--CHHHHHHHHHHH----------cC---CCCCcc Confidence 667777778888888778764 222221 1223344432 1 122233344321 00 111111 Q ss_pred CcccccccC--CCCCC Q lcl|Aclame:pro 514 PDEEDDQAL--NGQPL 527 (527) Q Consensus 514 ~d~~~~~~~--~~~~~ 527 (527) +.....++. .-+++ T Consensus 607 ~~~~e~q~~~~~~q~~ 622 (714) T protein:vir:10 607 EMTPEEQEVAAQQQAL 622 (714) T ss_pred ccchhhHHHHHHHHHH Confidence 100000000 00000 No 95 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=99.47 E-value=6.4e-13 Score=87.42 Aligned_cols=479 Identities=11% Similarity=0.079 Sum_probs=233.4 Q ss_pred hhcccCCCC-C----CC-hHHHHHH--------------HHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 15 RAGEANFPN-A----VT-DFDKARL--------------ASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 15 ~~~~~~~~~-~----v~-~~d~~Rl--------------~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) .+-+++.+. - +. .-+++-+ +..+.-.+||.|++|+ ..++..--+.++.++-++-.+.+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~-~~~~~~l~~~g~p~~~~N~i~~~v 79 (714) T protein:vir:81 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP-PEVLQVLKDRGQPMTIHNLIAPTV 79 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC-HHHHHHHHhcCCCcEEeccHHHHH Confidence 221111111 1 11 1111111 2233567899999885 233323334568888899999999 Q ss_pred HhhhhhhccCcc---ccccCcc---hhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEE Q lcl|Aclame:pro 75 EAKMRFLGQGLK---WEFSKKD---AKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) Q Consensus 75 ~~~~~~Lg~~~~---~~i~~~~---~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i 144 (527) ++++++--.+.. +.+..++ +++ ...++.|.+.++.....-.+-..+++-|=||+.+++|+. ..+..|.| T Consensus 80 ~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d-~~~~~i~i 158 (714) T protein:vir:81 80 DGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSD-PFGPEFKV 158 (714) T ss_pred HHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccC-CCCCCeEE Confidence 999999843331 1232222 222 455577888888998899999999999999998888864 35568999 Q ss_pred EEEccceEEEE-----ecCCCCCceEEEEEEEeeeCCCCcccee--eee---e--------------------------- Q lcl|Aclame:pro 145 HEVDPSTYFPY-----EDPRYPGQVLGVYLVDEYPHPDSEKKNE--KCA---R--------------------------- 187 (527) Q Consensus 145 ~~vdP~~~fp~-----~d~d~~~~v~~vh~a~~~~~pd~~~~~~--k~~---r--------------------------- 187 (527) +.+||..+|.- .|..+...+... .|-+.+.-+... ++. + T Consensus 159 ~~v~p~~v~~Dp~a~~~D~sDar~~~~~----~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (714) T protein:vir:81 159 STVSRNEVFWDWLSREADLSDCRWLMRR----RWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEE 234 (714) T ss_pred EecchhheeeccccccCChhhccceeee----ecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhh Confidence 99999998763 222223223322 233322211100 000 0 Q ss_pred eeeeeeeecCCccccCCccceeeeccccc-----------cc---cccccc-------------ccccccceee--eccC Q lcl|Aclame:pro 188 VQKYMKTLDDDGKPVPGGAIKYTEELYEP-----------GK---WDDRPE-------------SPLEPDDIKK--LSTL 238 (527) Q Consensus 188 r~~~~~~~~~~g~p~~~g~i~~~~~~~~~-----------g~---wd~~~~-------------~~~~~~~~~~--~~~~ 238 (527) ...|.....++..+ ...+|...++.|+- |+ ++..+. ......++++ .+.. T Consensus 235 ~~~~~~~~~~~~~~-~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~ 313 (714) T protein:vir:81 235 YQSWDRQQNEWLQR-ERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGP 313 (714) T ss_pred hccccccccccccc-cccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecC Confidence 00000000000000 01122222222110 00 111000 0011111211 1222 Q ss_pred ccc--ccccccccccceEeeCCCC--CCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcc Q lcl|Aclame:pro 239 TEE--EPLPEQITTLPVFHFRGHP--IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNM 314 (527) Q Consensus 239 ~~e--~~l~~pi~~iPVV~~pN~~--~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~ 314 (527) ..+ .+.|.|.+++|+|.|-... ..+.++| -+-.++..++.+|++.|.+..++ +.+..+...|+.+.+.. +. T Consensus 314 ~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~-~~ 388 (714) T protein:vir:81 314 HFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDN-DL 388 (714) T ss_pred cccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHH-HH Confidence 222 4567777889999776653 3456654 57789999999999999988876 44444555554432210 10 Q ss_pred cceecCCCeeEecCCC--------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 315 VPWTISPLGMVEHGQN--------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 315 ~p~~v~pg~~~el~~~--------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ..---.|+.++.+.++ .+|.......-.+++.+.++.....|.+++++-...+|. .+++.||+|+...-. T Consensus 389 ~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~--~~na~SGvAi~~rq~ 466 (714) T protein:vir:81 389 MEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ--DSGATSGVAISNLVE 466 (714) T ss_pred HHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC--CccchhHHHHHHHHH Confidence 0011346677666543 345555544456668888888899999999999999994 467789999874433 Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhcccc---cc------------------------cceeEEEEe Q lcl|Aclame:pro 387 -AILSSCAEQELELKSVLKQFFYNLVTQWLPAY--EGVGIDD---AD------------------------KKLTVTITF 436 (527) Q Consensus 387 -PLlakv~~krl~~~~~~~q~~~~li~~~L~~~--e~v~~~~---~~------------------------~~~~v~v~w 436 (527) -..+...-.. -+.....++.+.++.++-.-| +++..+. .. ..+-|.|.= T Consensus 467 qg~~~l~~~~D-nl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~ 545 (714) T protein:vir:81 467 QGATTLAEIND-NYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAP 545 (714) T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEee Confidence 1111110000 012223233333333222212 2211111 00 112233455 Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccHHHH---HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWEAGLIPAKKL---TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~aGlls~~ta---~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) ++..|+.+++.++.++.+.+. ++..+. +..+.+.+.. | ..+++.+++.+. .+ ..+... T Consensus 546 ~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~--p--~~~el~~~ir~~----------~~---~~~~~~ 606 (714) T protein:vir:81 546 VQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDV--P--QKQEFVERIRAA----------LG---TPKSPD 606 (714) T ss_pred ccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCC--C--CHHHHHHHHHHH----------cC---CCCCcc Confidence 667777778888888778764 222221 1223344432 1 122233344321 00 111111 Q ss_pred CcccccccC--CCCCC Q lcl|Aclame:pro 514 PDEEDDQAL--NGQPL 527 (527) Q Consensus 514 ~d~~~~~~~--~~~~~ 527 (527) +.....++. .-+++ T Consensus 607 ~~~~e~q~~~~~~q~~ 622 (714) T protein:vir:81 607 EMTPEEQEVAAQQQAL 622 (714) T ss_pred ccchhhHHHHHHHHHH Confidence 100000000 00000 No 96 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=99.47 E-value=6.4e-13 Score=87.42 Aligned_cols=479 Identities=11% Similarity=0.079 Sum_probs=233.4 Q ss_pred hhcccCCCC-C----CC-hHHHHHH--------------HHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 15 RAGEANFPN-A----VT-DFDKARL--------------ASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 15 ~~~~~~~~~-~----v~-~~d~~Rl--------------~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) .+-+++.+. - +. .-+++-+ +..+.-.+||.|++|+ ..++..--+.++.++-++-.+.+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy~G~Qw~-~~~~~~l~~~g~p~~~~N~i~~~v 79 (714) T protein:vir:32 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYYDGDQLP-PEVLQVLKDRGQPMTIHNLIAPTV 79 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcCCCCC-HHHHHHHHhcCCCcEEeccHHHHH Confidence 221111111 1 11 1111111 2233567899999885 233323334568888899999999 Q ss_pred HhhhhhhccCcc---ccccCcc---hhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEE Q lcl|Aclame:pro 75 EAKMRFLGQGLK---WEFSKKD---AKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) Q Consensus 75 ~~~~~~Lg~~~~---~~i~~~~---~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i 144 (527) ++++++--.+.. +.+..++ +++ ...++.|.+.++.....-.+-..+++-|=||+.+++|+. ..+..|.| T Consensus 80 ~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d-~~~~~i~i 158 (714) T protein:vir:32 80 DGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSD-PFGPEFKV 158 (714) T ss_pred HHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcCcceEEeccccC-CCCCCeEE Confidence 999999843331 1232222 222 455577888888998899999999999999998888864 35568999 Q ss_pred EEEccceEEEE-----ecCCCCCceEEEEEEEeeeCCCCcccee--eee---e--------------------------- Q lcl|Aclame:pro 145 HEVDPSTYFPY-----EDPRYPGQVLGVYLVDEYPHPDSEKKNE--KCA---R--------------------------- 187 (527) Q Consensus 145 ~~vdP~~~fp~-----~d~d~~~~v~~vh~a~~~~~pd~~~~~~--k~~---r--------------------------- 187 (527) +.+||..+|.- .|..+...+... .|-+.+.-+... ++. + T Consensus 159 ~~v~p~~v~~Dp~a~~~D~sDar~~~~~----~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 234 (714) T protein:vir:32 159 STVSRNEVFWDWLSREADLSDCRWLMRR----RWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMSAWEE 234 (714) T ss_pred EecchhheeeccccccCChhhccceeee----ecCCHHHHHHhcCCchhhhhhhhhhhccccccccccccccccccchhh Confidence 99999998763 222223223322 233322211100 000 0 Q ss_pred eeeeeeeecCCccccCCccceeeeccccc-----------cc---cccccc-------------ccccccceee--eccC Q lcl|Aclame:pro 188 VQKYMKTLDDDGKPVPGGAIKYTEELYEP-----------GK---WDDRPE-------------SPLEPDDIKK--LSTL 238 (527) Q Consensus 188 r~~~~~~~~~~g~p~~~g~i~~~~~~~~~-----------g~---wd~~~~-------------~~~~~~~~~~--~~~~ 238 (527) ...|.....++..+ ...+|...++.|+- |+ ++..+. ......++++ .+.. T Consensus 235 ~~~~~~~~~~~~~~-~~~rv~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~~~g~ 313 (714) T protein:vir:32 235 YQSWDRQQNEWLQR-ERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAWFVGP 313 (714) T ss_pred hccccccccccccc-cccEEEEEEEEEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhccccceEEEEEEecC Confidence 00000000000000 01122222222110 00 111000 0011111211 1222 Q ss_pred ccc--ccccccccccceEeeCCCC--CCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcc Q lcl|Aclame:pro 239 TEE--EPLPEQITTLPVFHFRGHP--IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNM 314 (527) Q Consensus 239 ~~e--~~l~~pi~~iPVV~~pN~~--~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~ 314 (527) ..+ .+.|.|.+++|+|.|-... ..+.++| -+-.++..++.+|++.|.+..++ +.+..+...|+.+.+.. +. T Consensus 314 ~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G--~vr~~~d~Qr~~N~~~s~~~~~l--~~~~~~~~~~a~~~~d~-~~ 388 (714) T protein:vir:32 314 HFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYG--LISRAIPAQDEVNFRRIKLTWLL--QAKRVIMDEDATQLSDN-DL 388 (714) T ss_pred cccccCCCCCCCCceeEEEEeeeeeeccCceee--hhhhchhHHHHHHHHHHHHHHhh--cCCceeeecCcccccHH-HH Confidence 222 4567777889999776653 3456654 57789999999999999988876 44444555554432210 10 Q ss_pred cceecCCCeeEecCCC--------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 315 VPWTISPLGMVEHGQN--------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 315 ~p~~v~pg~~~el~~~--------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) ..---.|+.++.+.++ .+|.......-.+++.+.++.....|.+++++-...+|. .+++.||+|+...-. T Consensus 389 ~e~~arp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~--~~na~SGvAi~~rq~ 466 (714) T protein:vir:32 389 MEQIERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ--DSGATSGVAISNLVE 466 (714) T ss_pred HHhccCCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCC--CccchhHHHHHHHHH Confidence 0011346677666543 345555544456668888888899999999999999994 467789999874433 Q ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhcccc---cc------------------------cceeEEEEe Q lcl|Aclame:pro 387 -AILSSCAEQELELKSVLKQFFYNLVTQWLPAY--EGVGIDD---AD------------------------KKLTVTITF 436 (527) Q Consensus 387 -PLlakv~~krl~~~~~~~q~~~~li~~~L~~~--e~v~~~~---~~------------------------~~~~v~v~w 436 (527) -..+...-.. -+.....++.+.++.++-.-| +++..+. .. ..+-|.|.= T Consensus 467 qg~~~l~~~~D-nl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi~~~~~Dv~i~~ 545 (714) T protein:vir:32 467 QGATTLAEIND-NYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTHIALAP 545 (714) T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccceeeeEEEEEee Confidence 1111110000 012223233333333222212 2211111 00 112233455 Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccHHHH---HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWEAGLIPAKKL---TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~aGlls~~ta---~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) ++..|+.+++.++.++.+.+. ++..+. +..+.+.+.. | ..+++.+++.+. .+ ..+... T Consensus 546 ~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d~--p--~~~el~~~ir~~----------~~---~~~~~~ 606 (714) T protein:vir:32 546 VQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLDV--P--QKQEFVERIRAA----------LG---TPKSPD 606 (714) T ss_pred ccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcCC--C--CHHHHHHHHHHH----------cC---CCCCcc Confidence 667777778888888778764 222221 1223344432 1 122233344321 00 111111 Q ss_pred CcccccccC--CCCCC Q lcl|Aclame:pro 514 PDEEDDQAL--NGQPL 527 (527) Q Consensus 514 ~d~~~~~~~--~~~~~ 527 (527) +.....++. .-+++ T Consensus 607 ~~~~e~q~~~~~~q~~ 622 (714) T protein:vir:32 607 EMTPEEQEVAAQQQAL 622 (714) T ss_pred ccchhhHHHHHHHHHH Confidence 100000000 00000 No 97 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=99.46 E-value=3.7e-13 Score=88.73 Aligned_cols=488 Identities=10% Similarity=0.050 Sum_probs=226.4 Q ss_pred CCCChhhhhh----------hhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCch Q lcl|Aclame:pro 1 MGQDKRQYGS----------TQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNG 70 (527) Q Consensus 1 m~~~~~qy~~----------~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~ 70 (527) |.....--+. ....+..+. -.+.....-| +..+.=.+||.|++|+ ..++..--+.++.++-++-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~r-~~a~~d~~fy~G~Qw~-~~~~~~l~~~g~p~~~~N~i 75 (714) T protein:vir:10 1 MKNEINTTAMKNDHGSTPRFSQRQLLSLC---SDIDSQPLWR-DAANKACAYYDGDQLA-PEVIQVLKDRGQPMTIHNLI 75 (714) T ss_pred CCcCcCcccCCCcchhhhhhhHHHHHHHH---HHHhhhHHHH-HHHHHHHHhhcCCCCC-HHHHHHHHhcCCCcEEeccH Confidence 3321110000 000000000 0000001112 3344667899999885 33333444556888889999 Q ss_pred hHHHHhhhhhhccCc---cccccCcch---h----HHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCcc Q lcl|Aclame:pro 71 EKLIEAKMRFLGQGL---KWEFSKKDA---K----VDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGS 140 (527) Q Consensus 71 ~k~v~~~~~~Lg~~~---~~~i~~~~~---~----v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~ 140 (527) +.+|++++++.-.+. .+.+..+++ + ....++.+.+.++.....-.+-..+++-|-||+.+++|+.- .+. T Consensus 76 ~~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~~~~~~~~~~s~af~~~~~~G~G~~~~~~d~d~-~~~ 154 (714) T protein:vir:10 76 APTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADACRLGNMNKARSDAYAEQIKAGLSWVEVRRNSEP-FGP 154 (714) T ss_pred HHHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHHHhhchhHHHHHHHHHhhhcccceEEeeeccCC-CCC Confidence 999999999984333 122333332 2 24455778888889999999999999999999988888653 456 Q ss_pred ceEEEEEccceEEEEe---cCC--CCCceEEEEEEEeeeCCCCccceee-----eee----------------------- Q lcl|Aclame:pro 141 RLSLHEVDPSTYFPYE---DPR--YPGQVLGVYLVDEYPHPDSEKKNEK-----CAR----------------------- 187 (527) Q Consensus 141 r~~i~~vdP~~~fp~~---d~d--~~~~v~~vh~a~~~~~pd~~~~~~k-----~~r----------------------- 187 (527) +|.|+.|||..+|.-. .+| +...+... +|-+.+.-+.... +.+ T Consensus 155 ~i~i~~v~p~~v~~Dp~a~~~D~sDar~~~~~----~~~~~~~~~~~fp~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (714) T protein:vir:10 155 EFKVSTVSRNEVFWDWLSREADLSDCRWLMRR----RWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTEGQPSPLMS 230 (714) T ss_pred CeEEEecChhheeeccccccCChhhhhhhhhh----ccCCHHHHHHhcCCchhhhhccchhhcCcccchhhhhhcccccc Confidence 8999999999877631 122 22222211 1222111110000 000 Q ss_pred ----eeeeeeeecCCccccCCccceeeeccccc--------------ccccccccc----------cc---ccccee-ee Q lcl|Aclame:pro 188 ----VQKYMKTLDDDGKPVPGGAIKYTEELYEP--------------GKWDDRPES----------PL---EPDDIK-KL 235 (527) Q Consensus 188 ----r~~~~~~~~~~g~p~~~g~i~~~~~~~~~--------------g~wd~~~~~----------~~---~~~~~~-~~ 235 (527) ...|-.....+..+ ...+|...++.|+- ..|+..+.. .+ ..-+++ .+ T Consensus 231 ~~~~~~~~~~~~~~~~~~-~~~rV~v~E~w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~~~~rv~~~~ 309 (714) T protein:vir:10 231 AWEEYQSWDRQQNEWLQR-ERRRVLLQVVYYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVGRVSRIREAW 309 (714) T ss_pred cchhhccccccccccccc-CcceEEEEEEEEeEEEEEEeecCCCCCeeeeCccCHHHHHHHHhccceecccceeeEEEEE Confidence 00000000000000 00112222221110 001111100 00 000111 11 Q ss_pred ccCcc---cccccccccccceEeeCCCCC--CCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCC Q lcl|Aclame:pro 236 STLTE---EEPLPEQITTLPVFHFRGHPI--MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDS 310 (527) Q Consensus 236 ~~~~~---e~~l~~pi~~iPVV~~pN~~~--~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~ 310 (527) ..|.+ +.+.|.|.+++|+|.|..... .+.++ .-+-.+++.++.+|++.|.+..++- .+..+...|+.+.+. T Consensus 310 ~~g~~~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~--G~vr~~~d~Qr~~N~~~s~~~~~l~--~~~~~~~~gav~~~d 385 (714) T protein:vir:10 310 FVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPY--GLISRAIPAQDEVNFRRIKLTWLLQ--AKRVIMDEDATQLSD 385 (714) T ss_pred EecchhhhcCCCCCCCCceeeEEecceeeeccCccc--eehhhhhhHHHHHHHHHHHHHHHHh--CCceeeccccccccH Confidence 12222 344566777899988877643 34444 4678899999999999999988774 333445555443221 Q ss_pred CCcccceecCCCeeEecCCC--------CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHH Q lcl|Aclame:pro 311 RGNMVPWTISPLGMVEHGQN--------NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALD 382 (527) Q Consensus 311 ~G~~~p~~v~pg~~~el~~~--------~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALq 382 (527) -+...---.||.++.+.++ +++.......-.+.+.+.++.....|.+++++-...+|. .+++.||+|+. T Consensus 386 -~~~~e~~~rp~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~--~~na~SGvAI~ 462 (714) T protein:vir:10 386 -NDLMEQLERPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQ--DSGATSGVAIS 462 (714) T ss_pred -HHHHHhccCCCCeEEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHHcCC--CcchhHHHHHH Confidence 0110001346777766443 355655533334567888888899999999999999994 46778999987 Q ss_pred HHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhcccc---c--cccee---------------------- Q lcl|Aclame:pro 383 LKLS-AILSSCAEQELELKSVLKQFFYNLVTQWLPAY---EGVGIDD---A--DKKLT---------------------- 431 (527) Q Consensus 383 l~~~-PLlakv~~krl~~~~~~~q~~~~li~~~L~~~---e~v~~~~---~--~~~~~---------------------- 431 (527) .... -..+...-.. -+.....++++.++.. ++.| +++..+. . ....+ T Consensus 463 ~r~~qg~~~l~~~~d-nl~~~~~~~g~~ll~l-i~~~~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~~~~~nDi~~~~~d 540 (714) T protein:vir:10 463 NLVEQGATTLAEIND-NYQFACQQVGRLLLAY-LLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDISRLNTH 540 (714) T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHcCCCcEEEEeccCCCcccceeEeeccccCCccccccceeeeEE Confidence 4333 1111000000 0112222333333332 3332 2211111 0 01111 Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHH---HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 432 VTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKL---TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMA 508 (527) Q Consensus 432 v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta---~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~ 508 (527) |.|.=++..|+-+++.++.++.+.+.. ..++. +..+.+.+. .+ ...++.+++.+. .+ . T Consensus 541 v~i~~~p~~~s~r~~~~~~l~ql~~~~--~p~~~~~~~~~~le~~d--~p--~~~ei~~~ir~~----------~~---~ 601 (714) T protein:vir:10 541 IALAPVQQTPAFKAQLAQRMSEVIQGL--PPQVQAVVLDLWVNLLD--VP--QKQEFVERIRAA----------LG---T 601 (714) T ss_pred EEEeeccCcHHHHHHHHHHHHHHHhhc--CchhhhhHHHHHHHhcC--Cc--CHHHHHHHHHHH----------cC---C Confidence 222234556666677777777676542 11111 122233332 11 122233333221 00 1 Q ss_pred ccCCCCcccccccC--CCCCC Q lcl|Aclame:pro 509 AEQGIPDEEDDQAL--NGQPL 527 (527) Q Consensus 509 ~d~g~~d~~~~~~~--~~~~~ 527 (527) .+...+.....++. -..++ T Consensus 602 ~~~~~~~~~e~q~~q~~~~~~ 622 (714) T protein:vir:10 602 PKSPDEMTPEEQEVAAQQQAL 622 (714) T ss_pred CCCccccCcchhHHHHHHHHH Confidence 10000000000000 00001 No 98 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=99.45 E-value=3.3e-12 Score=83.52 Aligned_cols=501 Identities=12% Similarity=0.065 Sum_probs=213.5 Q ss_pred CCCChhhhhhhh----HHhhcccC-CCCCCCh-HHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQ----QLRAGEAN-FPNAVTD-FDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~----~~~~~~~~-~~~~v~~-~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) |.=-+|.+.-.. .|+...-. -.|++.. -...|.+++ +||+|+++.- ...++..+..|...+.| T Consensus 1 ~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~y~g~~~~~-------~~~~~s~~~~~~v~~~v 69 (705) T protein:vir:88 1 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEAL----KYYFGEPFGN-------ERPGKSGIVSRDVQETV 69 (705) T ss_pred CCcccccccCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----HHHhCCCCCc-------ccCCCCccccHHHHHHH Confidence 655444433222 23332211 0011111 011233333 6899987652 23345567777788899 Q ss_pred HhhhhhhccC-------ccccccCcc----hhHHHHHHHH--HHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCc-- Q lcl|Aclame:pro 75 EAKMRFLGQG-------LKWEFSKKD----AKVDDAIRVL--FDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEG-- 139 (527) Q Consensus 75 ~~~~~~Lg~~-------~~~~i~~~~----~~v~~~lr~w--~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~-- 139 (527) ++.+..|.-- +.+.+..++ +++...+-.| .+.++...-+...-++|++-|-||++|.|+..+.+. T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~dal~~g~gi~kv~we~~~~~~~e 149 (705) T protein:vir:88 70 DWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFE 149 (705) T ss_pred HHHHHHHHHhhcCCCceEEEeeCChhHHHHHHHHHHHHhHHHhhccchhHHHHHHHHHHhhcCCeEEEeccccccchhhh Confidence 9988888421 122332222 2232222223 444445566778999999999999999996432221 Q ss_pred ------------------------------------------cceEEEEEccceEEEE---ecCCCCCceEEEE-EEE-- Q lcl|Aclame:pro 140 ------------------------------------------SRLSLHEVDPSTYFPY---EDPRYPGQVLGVY-LVD-- 171 (527) Q Consensus 140 ------------------------------------------~r~~i~~vdP~~~fp~---~d~d~~~~v~~vh-~a~-- 171 (527) .+|.|+.|+|.-+|+- .+.++...+...+ +-. T Consensus 150 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~~~dp~a~~~~d~~~~~~~~~~t~~d 229 (705) T protein:vir:88 150 RFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSD 229 (705) T ss_pred hhccCChhhhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHceecCCCCCcccCcEEEEEEeccHHH Confidence 2566667777665532 2222222111111 000 Q ss_pred --eeeCCCCccceeeeee---eeeeeeeecCCccccCCc--------------cceeeecccccccccccccccccccce Q lcl|Aclame:pro 172 --EYPHPDSEKKNEKCAR---VQKYMKTLDDDGKPVPGG--------------AIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 172 --~~~~pd~~~~~~k~~r---r~~~~~~~~~~g~p~~~g--------------~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) .+--|.+.. ...+.. ...+......++.--.++ .|..-+| | ..|+..... ....+ T Consensus 230 l~~~g~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~~~~~~~r~v~~~E~-y--~~~d~~~d~--~~~~~ 303 (705) T protein:vir:88 230 LRLLGVPEDVI-EELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASEC-Y--TLLDVDGDG--ISELR 303 (705) T ss_pred HHhhcCChhHh-hhhhcccccchhhhhhhccccccccccccccccccccCCceeEEEEEe-e--eEecccCCc--ceeeE Confidence 000000000 000000 000000000000000000 0111111 0 112211110 01122 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG 312 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G 312 (527) .....|.++-.. .|++.+|+|.++-.+.+++.||.|-++.+.++++.+|+.++.+..++..+++|.+...... ++.+. T Consensus 304 ~~~~~g~~il~~-~~~~~~PF~~~~~~p~~~~~~G~g~~~~~~d~Q~~~n~~~~~~~d~~~~~~~~~~~~~~g~-v~~~d 381 (705) T protein:vir:88 304 RILYVGDYIISN-EPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQ-VNLED 381 (705) T ss_pred EEEEeCcccccc-ccCCCCCEEEecceeecCccccCChHHHHhHHHHHHHHHHHHHHHHHHhccCCceeccccc-cCccc Confidence 222334443332 4788999999999888999999999999999999999999999999999999965542222 22211 Q ss_pred cccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccc-ccc-ccccHHHHHHHhccHHH Q lcl|Aclame:pro 313 NMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVV-DAA-VAESGIALDLKLSAILS 390 (527) Q Consensus 313 ~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~-d~s-~a~SG~ALql~~~PLla 390 (527) ..+..||.+|.....+.+..+....-..++.+-++.+...+.++++++.+..|.. ++. +..++.++.+.++---. T Consensus 382 ---~~~~~pg~vv~~~~~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~~~G~~~~~~~~~~Ta~~i~~~~~~~~~ 458 (705) T protein:vir:88 382 ---LLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQ 458 (705) T ss_pred ---ccccCCCeeEEecCCCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchHHcCCCcccccchhhHHHHHHHHHHHHH Confidence 2345789998877767777776433445566778888889999999999999933 121 23455666666653333 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhhh-hh--hccccc----------ccceeEEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 391 SCAEQELELK-SVLKQFFYNLVTQWLPAY-EG--VGIDDA----------DKKLTVTITFRDPKPVNNEKRFAQLLELWE 456 (527) Q Consensus 391 kv~~krl~~~-~~~~q~~~~li~~~L~~~-e~--v~~~~~----------~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~ 456 (527) +...+.-.|. +++.++++.++ .++..| .. +....+ ....-+.+.=+ ....+.++....+..+.+ T Consensus 459 r~~~~~r~~a~~~~~~l~~~~~-~li~~~~~~~~~~ri~g~~v~v~~~~~~~~~~v~v~v~-~~~~~~eq~~a~l~~ll~ 536 (705) T protein:vir:88 459 QIDLIARMFAETGVKRLFQLLH-DHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVG-IGNMNKDQQMLHLMRIWE 536 (705) T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCceEEeeccchhccchHhhccCCceEEeec-cccchHHHHHHHHHHHHH Confidence 3333332332 33444443332 233333 11 100000 00111122111 112233333222222211 Q ss_pred ---c----CC----ccHH---HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCc----ccccccccCCC-C-cc Q lcl|Aclame:pro 457 ---A----GL----IPAK---KLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADP----FGAQMAAEQGI-P-DE 516 (527) Q Consensus 457 ---a----Gl----ls~~---ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~----~g~~~~~d~g~-~-d~ 516 (527) . .. ++.. ..++.|.++.+..-..+...+.....+.++..+...... .-..+.++..- . |. T Consensus 537 ~~q~l~~~~~~~~~~~~~~~~~~~~el~e~~~~k~~~~~~~~~~~~e~~~~~~~~~q~e~~~~~~~~~~q~e~~k~q~e~ 616 (705) T protein:vir:88 537 MAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDA 616 (705) T ss_pred HHHHhhcccchhhhcChHHHHHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH Confidence 1 00 0000 011111111111000000000000000000000000000 00000000000 0 00 Q ss_pred cccccCCCCCC Q lcl|Aclame:pro 517 EDDQALNGQPL 527 (527) Q Consensus 517 ~~~~~~~~~~~ 527 (527) +-.+.+ ..+ T Consensus 617 ~~~q~e--~q~ 625 (705) T protein:vir:88 617 LAKQAE--AQM 625 (705) T ss_pred HHHHHH--HHH Confidence 000000 000 No 99 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=99.44 E-value=1.1e-12 Score=86.13 Aligned_cols=483 Identities=12% Similarity=0.070 Sum_probs=234.2 Q ss_pred CCCChhhhhhhh------HHhh-cccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQ------QLRA-GEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~~~~~qy~~~~------~~~~-~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~ 73 (527) |.-+.|--.+.. .+++ -+.++-|.=..-+.+=...|+.|.+|+.-.+...+ ++. .-.+++|.+.-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~el~~y~~a~~~~~~~~~~--~~~-----r~~~~~~k~~~~ 73 (584) T protein:vir:95 1 MSVKVAELNSLLVRDSSAQWVAYLWDRFNNQRRQKIEEWKELRNYVFATDTTTTSNQG--LPW-----KNSTTLPKLCQI 73 (584) T ss_pred CCcchhhhhhhccccchHHHHHHHHHHHHhhhchhhccCHHHHHHHHhhhhhhhhhcc--ccc-----ccccchhHHHHH Confidence 655554333222 1110 01110010011111115567777777765544322 222 224688999999 Q ss_pred HHhhhhhhc-cCcc---c---c---ccCcchhHHHHHHHHH----HhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCc Q lcl|Aclame:pro 74 IEAKMRFLG-QGLK---W---E---FSKKDAKVDDAIRVLF----DRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEG 139 (527) Q Consensus 74 v~~~~~~Lg-~~~~---~---~---i~~~~~~v~~~lr~w~----~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~ 139 (527) +++.+.+|+ .-|+ | . ....++..+++++... ..+++..-|...-+.+++.|-|++++.|..+-.+- T Consensus 74 ~~~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl~e~~~~~~~~~~i~d~~~~G~~~~k~~~~~~~~e~ 153 (584) T protein:vir:95 74 RDNLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKCRESHFRTEVSKLIYDYIDYGNAFATVSFEAKYKEM 153 (584) T ss_pred HHHHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhhccCCceEEEEeEeecceee Confidence 999887774 2111 1 1 1111222366666665 34568888999999999999999999999542211 Q ss_pred ---------cceEEEEEccceEEEE-ec--CCCCCceEEEEEEEeeeCCCCccceeeeeeeeee--------------ee Q lcl|Aclame:pro 140 ---------SRLSLHEVDPSTYFPY-ED--PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKY--------------MK 193 (527) Q Consensus 140 ---------~r~~i~~vdP~~~fp~-~d--~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~--------------~~ 193 (527) .|+.|+.+.|..+||- .. .++...+.+..+ +-.+-.+..+..-...| .+ T Consensus 154 ~e~~~v~~~~~prieriSP~d~~~Dpsa~~i~d~~fivrs~~-----T~~~L~~l~~~~~~~~y~~d~v~~~~~~~~~~~ 228 (584) T protein:vir:95 154 TDGTLVPDYIGPRLVRISPLDIVFNPLATSISDTFKIVRSVK-----TKGELMRLAQDEPEQSYWLEALKRREEICRHLG 228 (584) T ss_pred eccccccccccceEEeeChhheeecCCCCCccchhhhhhhhh-----hHHHHHHHHhhcCccccchHHHHHHHHhccCCC Confidence 1788899999998862 11 111212221111 00000000000000000 00 Q ss_pred eec-CCccccC----Cccceeeeccc--------ccccccccccccccccceeeeccCcc---cccccccccccceEeeC Q lcl|Aclame:pro 194 TLD-DDGKPVP----GGAIKYTEELY--------EPGKWDDRPESPLEPDDIKKLSTLTE---EEPLPEQITTLPVFHFR 257 (527) Q Consensus 194 ~~~-~~g~p~~----~g~i~~~~~~~--------~~g~wd~~~~~~~~~~~~~~~~~~~~---e~~l~~pi~~iPVV~~p 257 (527) .+. ++...+. ++..+..++|- ..|.|-++...+.....+..+-.+.. .+.-|.|-+.+|+|+++ T Consensus 229 ~~~~~~~~~~~~~~~d~~~~~~ey~~~~~V~vl~~~g~~~~~~~~e~~~~~iv~v~~g~~iIR~~~np~~~~~~PF~~~~ 308 (584) T protein:vir:95 229 GYSVEDFDKAAGFDVDGFGNLYEYYMSDWVEILEFYGDYHDKETGELQTNRIITVVDRSTEVRNESIPTWFGSAPIYHVG 308 (584) T ss_pred CCcccccccccccccccccccccccCCceeEEEeecccccccccCCCcccceEEEEeccEEEEeeecCCCCCCCCEEEEc Confidence 000 0011110 01111111100 01333333322333333433333333 35677888999999999 Q ss_pred CCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEec Q lcl|Aclame:pro 258 GHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVN 337 (527) Q Consensus 258 N~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld 337 (527) -.|...+.||.|.++-+..++++||...-.+-..+..+++|+...-+.. ..+.-+||.+|..++.+-+..+. T Consensus 309 ~~p~~~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~pv~k~~~~~--------~~~~~~pg~~~~~~~~~~~q~~~ 380 (584) T protein:vir:95 309 WRFRPDNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQPPLKIIGEV--------EEFVWGPGAEIHLDQGGDVQEIA 380 (584) T ss_pred ceeeeccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCcceeecccc--------chhcccCCceeecCCCCCcceec Confidence 9988999999999999999999999999999999999999975543322 22456799999999998877775 Q ss_pred cc-cChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHH-HHHHHHHHHH Q lcl|Aclame:pro 338 GV-ASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQ-FFYNLVTQWL 415 (527) Q Consensus 338 ~~-~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q-~~~~li~~~L 415 (527) .. +++....+.+..+...+.+.+++|+.+-|-- .+.+..-. ..+.|..++++....+...++. +++.++. +| T Consensus 381 p~a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~-~~~~~TAt----g~s~l~naa~~~~r~~~~~f~~~ll~~l~~-ll 454 (584) T protein:vir:95 381 KNVNYIINADNQIQMLEDRMELYAGAPREAMGIR-TPGEKTAF----EVQQLGNAAGRIFQEKVTTFEVELLEPVLN-AM 454 (584) T ss_pred CchhhhhHHHHHHHHHHHHHHhhhCCChhhcccc-cchhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH Confidence 42 2444444567778889999999999999942 22222111 2344444555433333333322 2222221 22 Q ss_pred hhh-hhhcccccccceeEEEEe---------------------CCCCC--CCHHHHHHHHHHHHh-------cCCccHHH Q lcl|Aclame:pro 416 PAY-EGVGIDDADKKLTVTITF---------------------RDPKP--VNNEKRFAQLLELWE-------AGLIPAKK 464 (527) Q Consensus 416 ~~~-e~v~~~~~~~~~~v~v~w---------------------~d~lP--~D~~~~i~~~v~l~~-------aGlls~~t 464 (527) ..| ..-+ +....+.+...+ +.... ..+++-+++.....+ ++.++... T Consensus 455 ~~~~~~nm--d~~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq~~q~l~~ilq~~~~~~i~p~~~~~~ 532 (584) T protein:vir:95 455 LETATRNM--DGSDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQDLQNLVGIFNSQIGQMILPHTSGKA 532 (584) T ss_pred HHHHHhhc--cccCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHHHHHHHHHHHHhhhhhhccccchHHH Confidence 222 1111 000011011000 01111 134444555555555 23344444 Q ss_pred HHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 465 LTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 465 a~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) ..+.|.+.++.+- ++-..++..+..+..+.+++.+ .+-+++.+.+-+ T Consensus 533 l~~~ladl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~--~~~~~~~~~~~~ 584 (584) T protein:vir:95 533 LATFVDDVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDL--QLQAQMPAEGAI 584 (584) T ss_pred HHHHHHHHhCCCcccccCCCcccchhHHHHhhhHHHHHHH--HHHHhhhhccCC Confidence 4444444433221 1111111111111111111111 112222333233 No 100 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=99.44 E-value=4.5e-13 Score=88.25 Aligned_cols=506 Identities=12% Similarity=0.016 Sum_probs=231.1 Q ss_pred CCC--ChhhhhhhhHHhhcccCCCCCCChHHHH------------HHHHHHHHHHHhcCChhheEeeecCCccccccccc Q lcl|Aclame:pro 1 MGQ--DKRQYGSTQQLRAGEANFPNAVTDFDKA------------RLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIY 66 (527) Q Consensus 1 m~~--~~~qy~~~~~~~~~~~~~~~~v~~~d~~------------Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~ 66 (527) |-. +..||....+= ..+ .-+...... |-.| +.-.+||.|++|+= .++..--+.++.++- T Consensus 1 ~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~q~~~r~~a-~~d~~fy~G~QW~~-~~~~~l~~~g~p~~~ 73 (772) T protein:vir:10 1 MQITENDRQYLNGLPP---AGD--TPLTVDEYADINYEIEDQPAWRAVA-DKEMDYADGNQLDT-ELLRRQQALGIPPAV 73 (772) T ss_pred CCcchhhHHhhccCCc---ccc--cccCHHHHHHHHHHHhccHHHHHHH-HHHHHhhcCCCCCH-HHHHHHHhcCCCcEE Confidence 332 34455443220 000 111111111 1111 24567999998852 222233445788888 Q ss_pred CCchhHHHHhhhhhhccCc---cccccC--cchhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCC Q lcl|Aclame:pro 67 VPNGEKLIEAKMRFLGQGL---KWEFSK--KDAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKD 137 (527) Q Consensus 67 ~p~~~k~v~~~~~~Lg~~~---~~~i~~--~~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~ 137 (527) ++-.+.+|++++++--.+. .+.+.. +++++ ...++.+.+.++.....-.+-..+++-|=||+.++++++. T Consensus 74 ~N~i~~~v~~v~g~~~~nr~d~~v~Pr~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~Gw~e~~~~~d~- 152 (772) T protein:vir:10 74 EDLIGPALLSLQGYEAVTRTDWRVTPNGDVGGQEVADALNYRLNTAERQSGADRACSEAFRPQIACGIGWVEVSRESDP- 152 (772) T ss_pred EcchHHHHHHHHHHHHhcCcceEEecCCCchHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHhhhcCceeEEeccccCC- Confidence 9999999999999984333 122332 22333 4444667777889988999999999999999999998765 Q ss_pred CccceEEEEEccceEEEEe--cCC--CCCceEEEEEEEeeeCCCCcccee-----eeee----eeeeeeeec----CC-- Q lcl|Aclame:pro 138 EGSRLSLHEVDPSTYFPYE--DPR--YPGQVLGVYLVDEYPHPDSEKKNE-----KCAR----VQKYMKTLD----DD-- 198 (527) Q Consensus 138 ~~~r~~i~~vdP~~~fp~~--d~d--~~~~v~~vh~a~~~~~pd~~~~~~-----k~~r----r~~~~~~~~----~~-- 198 (527) .+..|.|+.+||..+|.-. .+| +...+.+.+ |-+.+.-+... .+.+ ...|..... .+ T Consensus 153 ~~~~i~i~~v~p~~v~~Dp~a~~D~sDar~~~~~~----~~~~d~~~~~fp~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (772) T protein:vir:10 153 FKFPYRCRPIRRDEIHWDMKCGDDWEACRFLRRQR----WLSPDRIALVFPEHAELIGMVGKYGSTWWGQPDLGMMEGGT 228 (772) T ss_pred CCCCeEEEeeCcccceecCCCCCCHHHhhhhhhhc----cCCHHHHHHhCCCchhHHHhhhhhcccccCccccccccccc Confidence 5668899999999877531 112 111233222 22222100000 0000 000000000 00 Q ss_pred --ccc------------------cCCccceeeeccccc-----------cc---cccccc----------cccc---ccc Q lcl|Aclame:pro 199 --GKP------------------VPGGAIKYTEELYEP-----------GK---WDDRPE----------SPLE---PDD 231 (527) Q Consensus 199 --g~p------------------~~~g~i~~~~~~~~~-----------g~---wd~~~~----------~~~~---~~~ 231 (527) |.. .-..+|...++.|+- |+ ++..+. ..++ ... T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rVrv~E~w~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~~~~~~~~~r 308 (772) T protein:vir:10 229 STGLHNAWNEARAWTVQEDHWYNPTSKEICLVELWYRRWVQVHVLKSPDGRVVEYDPNNLAHNIALASGRISPKKVTVSR 308 (772) T ss_pred ccccccccchhhccccccccccccCCceEEEEEEeeeeeeeeeeeccCCCceEeeCcccHHHHHHHhhcccchheeeeeE Confidence 000 000122222221110 00 110000 0000 011 Q ss_pred e--eeeccCccc--ccccccccccceEeeCCCCC--CCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccC Q lcl|Aclame:pro 232 I--KKLSTLTEE--EPLPEQITTLPVFHFRGHPI--MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSA 305 (527) Q Consensus 232 ~--~~~~~~~~e--~~l~~pi~~iPVV~~pN~~~--~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~ 305 (527) + ..+.....+ .+.|.|-+++|+|.+-.... .+.++ .-+.+++..++.+|++.|.+..++..+. +....|+ T Consensus 309 v~~~~~~g~~~L~~~~~p~~~~~fP~vP~~g~r~~~~g~~~--G~vr~~kd~Qr~~N~~~S~~~~~l~~~~--~~~~~ga 384 (772) T protein:vir:10 309 VRRSYWLGPHCLHDGPTPYTHRHFPYVPFFGFREDATGIPY--GYVRGMKYAQDSLNSGVSKLRWGMSVAR--VERTKGA 384 (772) T ss_pred EEEEEEecceeeccCCCCCCCCccceEEEeeeEeccCCccc--chhhhhhhHHHHHHHHHHHHHHHHhccc--ccccCCC Confidence 1 122233334 34667777899998776533 45555 4788899999999999999999887664 3333333 Q ss_pred CCcCCCCcccceecCCCeeEecCC------CCceEEeccccCh-HHHHHHHHHHHHHHHHhhcCchhhcccccccccccH Q lcl|Aclame:pro 306 PPRDSRGNMVPWTISPLGMVEHGQ------NNKIYRVNGVASL-EPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESG 378 (527) Q Consensus 306 ~~~d~~G~~~p~~v~pg~~~el~~------~~k~~~ld~~~~l-a~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG 378 (527) -+. .+.+...---.|+.++.+.+ ..+|..... +++ +++.+.++.....|.+++++-...+| ..+++.|| T Consensus 385 v~~-~d~~~~e~~arp~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~llq~~~~~i~~vsGv~~~~lG--~~~na~SG 460 (772) T protein:vir:10 385 VAM-TDAQFRRQIARPDADIVLDENHMAKPGARFDVKRD-YTLTDQHFQMLQDNRATIERVSNITAGFQG--RKGTATSG 460 (772) T ss_pred ccc-hhHHHHHhccCCCCeEEeCCccccCCCCCccccCC-ccccHHHHHHHHHHHHHHHHHhCCCHHHcC--CCcchhhH Confidence 221 11111111123566655544 356655553 455 57888888899999999999999999 56788899 Q ss_pred HHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h-hhcccccc---cceeEE------------------ Q lcl|Aclame:pro 379 IALDLK-LSAILSSCAEQELELKSVLKQFFYNLVTQWLPAY--E-GVGIDDAD---KKLTVT------------------ 433 (527) Q Consensus 379 ~ALql~-~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~--e-~v~~~~~~---~~~~v~------------------ 433 (527) +|++.. .+-..+...-.. -+.....++.+.++.++-.-| + -+...+.+ ...+|. T Consensus 461 vAi~~rq~qg~~~l~~~~D-nl~~~~~~~g~~lL~li~~~y~~er~~RI~~~d~~~~~~~v~in~~~~d~~tg~~~~~ND 539 (772) T protein:vir:10 461 IQEQQQIEQSNQSIGRIMD-NFRAGRTLVGELLLAMIVEDIGQERTEVVIEGDAVTADRVVVLNEPQRDPQTGAAYLSND 539 (772) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCCCCceEEeccceecccccccceecc Confidence 998733 222211110000 011222233333333222222 1 11111111 111121 Q ss_pred ---------EEeCCCCCCCHHHHHHHHHHHHhc-----------------CCccHHHHHHHHHHhcCCCCchHHHHHHHH Q lcl|Aclame:pro 434 ---------ITFRDPKPVNNEKRFAQLLELWEA-----------------GLIPAKKLTEELSKIMGFELTEEDFRQATE 487 (527) Q Consensus 434 ---------v~w~d~lP~D~~~~i~~~v~l~~a-----------------Glls~~ta~~~L~~~g~~~~~e~~~~~~~e 487 (527) |.=++..|+=+++-++.++.+... .+-..++.++++.++.+..-++...+++.+ T Consensus 540 i~~g~yDv~i~~~p~~~t~r~~~~~~m~ql~~~~~P~~~~~~~~~~le~~D~p~~~ei~~~ir~~~~~~~peq~~~~~~q 619 (772) T protein:vir:10 540 LLRTRIKVALEDVPSTNSYRGQQLNAMSEAVKSMPPQYQAAVLPFLVSLMDVPFKRDVVEAIRAVDQQQTPEQIQQQIDQ 619 (772) T ss_pred ceeeeEEEEeeccccchHHHHHHHHHHHHHHhccChhHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH Confidence 122223333244444444444322 111234555666666654444432222100 Q ss_pred HH--------------HHHHH---HHH-------------------Hh-cCcccccc----------cccCCCC--cccc Q lcl|Aclame:pro 488 DK--------------KTQGI---AQA-------------------EA-ADPFGAQM----------AAEQGIP--DEED 518 (527) Q Consensus 488 ~~--------------a~~a~---~~~-------------------aa-~d~~g~~~----------~~d~g~~--d~~~ 518 (527) .+ +.++. +++ ++ +.-....+ ....|.+ .... T Consensus 620 ~~qq~~~~~~~el~~~q~~a~~~~~~A~a~~~~aqa~~~~~~a~~~a~~aa~~~~q~~q~a~~ad~~l~~~g~~~~~~~~ 699 (772) T protein:vir:10 620 AVQDALAKAGNDIKLRELEIKERKADSEISGLNAKAVQIGVQAAFSAMQAGAQIAQMPMIAPIADAVMQSAGYQRPNPAG 699 (772) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhHHHHHHHHhcccccccccc Confidence 00 00000 000 00 00000010 0112222 1112 Q ss_pred cccCCCCCC Q lcl|Aclame:pro 519 DQALNGQPL 527 (527) Q Consensus 519 ~~~~~~~~~ 527 (527) .+...+++- T Consensus 700 ~~~~~p~~~ 708 (772) T protein:vir:10 700 DDPNYPIAD 708 (772) T ss_pred cCCCCCCCC Confidence 222222222 No 101 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=99.37 E-value=5.6e-11 Score=76.78 Aligned_cols=469 Identities=13% Similarity=0.116 Sum_probs=245.4 Q ss_pred CChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCc---ccccccccCCchhHHHHh Q lcl|Aclame:pro 3 QDKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGD---EGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 3 ~~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d---~~~~~~~~~p~~~k~v~~ 76 (527) -+. +...+.+.. ...+| +.+++.|.+|..-.-..+....+++. ......++.+-|.+.+++ T Consensus 1 ~~~------~~l~~r~~~-------l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~i~dst~~~a~~~ 67 (547) T protein:vir:10 1 MEN------SKIVKRLDF-------LKTDRKNVEQIWDCIRKYIMPMRSDFFSDLRSEGSINWNQNREVFDSTAGDGLET 67 (547) T ss_pred CCH------HHHHHHHHH-------HHHHhhHHHHHHHHHHHHhcccccccccCCCCCcccccccccccccchHHHHHHH Confidence 111 111111111 11233 56677788887543222111111111 122355688889999999 Q ss_pred hhhhhccC-----cccc-ccCcc------hh-------HHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCC Q lcl|Aclame:pro 77 KMRFLGQG-----LKWE-FSKKD------AK-------VDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKD 137 (527) Q Consensus 77 ~~~~Lg~~-----~~~~-i~~~~------~~-------v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~ 137 (527) .++.|+.+ .+|| ++..+ .+ |.+.+..-+.+.|+..-+-++=+..++-|-|+.++..||... T Consensus 68 Las~L~~~ltPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~d~~~~ 147 (547) T protein:vir:10 68 LSSSLHGSLTSPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQDSNFNLEANETYIDLCGYGNAIMVEEEDEDEE 147 (547) T ss_pred HHHHHHHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEeccCCCCC Confidence 88888532 2554 22222 22 344445567788899888888899999999999999887543 Q ss_pred CccceEEEEEccceEEEEecCCCCCceEEEEEE---------Eeee---CCCCccceee-ee-------eeeeeeeeecC Q lcl|Aclame:pro 138 EGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLV---------DEYP---HPDSEKKNEK-CA-------RVQKYMKTLDD 197 (527) Q Consensus 138 ~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a---------~~~~---~pd~~~~~~k-~~-------rr~~~~~~~~~ 197 (527) ..+.++.+..+.|+-..|+. |+|..|+-- .+|- .|++-....+ -. ..++.+ ++.. T Consensus 148 --~~~r~~~~pl~~~~v~~d~~--G~v~~i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~~~v-~~~~ 222 (547) T protein:vir:10 148 --GSVVFQSSPIQDSYFEEDSR--GQVVNFYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVVMCV-FTRY 222 (547) T ss_pred --CceeEEEeecceEEEeeCCC--cCeeeeeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEEEEE-eecc Confidence 25567888888888777664 567666411 1121 1111000000 00 000000 0001 Q ss_pred CccccCCccceeeecccccccccccccccccccceeeec--cCcccccc-cccccccceEeeCCCCCCCCccCCccccch Q lcl|Aclame:pro 198 DGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLS--TLTEEEPL-PEQITTLPVFHFRGHPIMNAMFGRSGLAGL 274 (527) Q Consensus 198 ~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~--~~~~e~~l-~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl 274 (527) ++.+-..+... |+. ..+| +..+- .+.....+ --.+...|++.++=...++++||+|=.++. T Consensus 223 ~~~~~~~~~~~----------~~~-~~~p-----~~s~~~e~~~~~~~l~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~ 286 (547) T protein:vir:10 223 DKKQNRNAGTV----------LAP-TERP-----FGKKWILKEGAVQLGEEGGYYEMPAYAIRWRKSAGSQWGFGPSHLA 286 (547) T ss_pred CCCCCccccce----------eec-cccc-----eeEEEEEecCceeeeecCCcccCCeeeeeeeecCCcccccchHHHH Confidence 11110000000 000 0011 11110 00000111 113557899999999899999999999999 Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHH Q lcl|Aclame:pro 275 ESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEE 354 (527) Q Consensus 275 ~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~ 354 (527) ++-+..||+.--.....+++.-+|++-. + .+ |...++..+||.++-.+....+.-+..-+++....+-++.+.. T Consensus 287 l~D~k~L~~l~~~~l~~~~~~~~pp~~v---~-~~--g~~~~~~~~pgg~~~~~~~~~v~pl~~~~~~~~~~~~i~~~~~ 360 (547) T protein:vir:10 287 LPDVLTANRYVELVLRSSEKVIDPAIMV---T-ER--GLISDIDLGASGLTVVRDMESMKPFESRARFDVSSIQLTDLRS 360 (547) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCceec---c-cc--cccccceecCCeeeecCCcccceeeecccchHHHHHHHHHHHH Confidence 9999999999999999999999987632 1 12 2223466789988777777777767766788888888888888 Q ss_pred HHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc------- Q lcl|Aclame:pro 355 AMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD------- 427 (527) Q Consensus 355 ~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~------- 427 (527) +|...=-... |+..|..... |=++ ..++++|+..++.++.++..+++.-++.+.-.++...+. T Consensus 361 rI~~af~~d~--~~~~~~~~~T---AtEV-----~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~ 430 (547) T protein:vir:10 361 AVRRIYYVDQ--LQMKDSPAMT---ATEV-----QVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFRAGKLGELPSK 430 (547) T ss_pred HHHHHhhhhh--hhcCCCcccc---HHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchh Confidence 8876432211 1212332211 3333 356778888888888887766665444332222211111 Q ss_pred ----cceeEEEEeCCCCCCCHHH--------HHHHHHHHHhcC-----CccHHHHHHHHHHhcCCCC----chHHHHHHH Q lcl|Aclame:pro 428 ----KKLTVTITFRDPKPVNNEK--------RFAQLLELWEAG-----LIPAKKLTEELSKIMGFEL----TEEDFRQAT 486 (527) Q Consensus 428 ----~~~~v~v~w~d~lP~D~~~--------~i~~~v~l~~aG-----lls~~ta~~~L~~~g~~~~----~e~~~~~~~ 486 (527) ....+.|++-.+|=+.... .++.+..+-+.+ .|-.+.+++.+.++.|.+. ++++++++. T Consensus 431 l~~~~~~~~~v~~is~Laraq~~~~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r 510 (547) T protein:vir:10 431 LLESGKAAMDIVYTGPLSRAQKIDQAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQTLMRPKAKVTSIR 510 (547) T ss_pred hhccCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChhccCCHHHHHHHH Confidence 1123445544444433211 111222222222 3788899999999988655 445555432 Q ss_pred HH-HHHHH-HHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 487 ED-KKTQG-IAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 487 e~-~a~~a-~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) .. ...++ .++++++.. ...++++-|.++.+=-+ |. T Consensus 511 ~qr~~~~q~~~qaa~~~~-~g~~m~~~~~~~a~~~~--~~ 547 (547) T protein:vir:10 511 KNRSQTQQKAEQAAIAEA-EGNAMEAQGKGQAALKE--NQ 547 (547) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhcCcccchhc--cC Confidence 21 11111 122222222 22334455544443111 11 No 102 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=99.36 E-value=2e-11 Score=79.22 Aligned_cols=474 Identities=11% Similarity=0.071 Sum_probs=230.2 Q ss_pred CCCChhh-hhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheE--eeecCCcccccccccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQ-YGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQ--VILRGGDEGDQRPIYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~q-y~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~--~i~~g~d~~~~~~~~~p~~~k~v~~~ 77 (527) |.-..++ ....-..|++. =+.-+.+++.|.+|..-.-..+. -.-+|+ .....++.+-|.+.+++. T Consensus 1 m~~~~~~~l~~r~~~l~~~----------R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~--~~~~~~~dst~~~a~~~L 68 (559) T protein:vir:95 1 MAETTKERLNKQFAQLESE----------RQSFEPHWRELSDYINPRGSRFLTSEVNRND--RRNTRIIDSTGTMAARTL 68 (559) T ss_pred CChhhHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHhccccCCcCCCCCCccc--ccccccccchHHHHHHHH Confidence 6653222 22222222211 12345678888888532111110 001111 123456888899999998 Q ss_pred hhhhcc-----Ccccc-ccCcc------hhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCC Q lcl|Aclame:pro 78 MRFLGQ-----GLKWE-FSKKD------AKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDE 138 (527) Q Consensus 78 ~~~Lg~-----~~~~~-i~~~~------~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~ 138 (527) ++.|+. +.+|| ++..+ .+|+++ +..-+.+.|+...+-++=+.-++-|-|++++.+|+.| T Consensus 69 as~l~~~ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d~~~-- 146 (559) T protein:vir:95 69 ASGMMSGITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDDDED-- 146 (559) T ss_pred HHHHHHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecCCCc-- Confidence 888853 23554 23222 234433 4456678889988888889988899999999998866 Q ss_pred ccceEEEEEccceEEEEecCCCCCceEEEEEEE---------eee---CCCCccceee--e-eeeeeee--eeecCCccc Q lcl|Aclame:pro 139 GSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVD---------EYP---HPDSEKKNEK--C-ARVQKYM--KTLDDDGKP 201 (527) Q Consensus 139 ~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~---------~~~---~pd~~~~~~k--~-~rr~~~~--~~~~~~g~p 201 (527) .+.++.+..+.|+-..|+. |+|..|+--. +|. .|++-...++ - ..+.+.. .+...+ T Consensus 147 --~~r~~~~~l~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~--- 219 (559) T protein:vir:95 147 --IIRTMPFPIGSYYLANSPR--GSVDTCFRKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEKWIEVMHSVYPNID--- 219 (559) T ss_pred --eeEEEEeecCeEEEeeCCC--CCeEEEEEeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCCeEEEEEEEecccc--- Confidence 3567889999988877764 6777765211 121 1111000000 0 0000000 000111 Q ss_pred cCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCcc-ccchHHHHHH Q lcl|Aclame:pro 202 VPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSG-LAGLESLIAS 280 (527) Q Consensus 202 ~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~-Ledl~~l~de 280 (527) ...++|+... +|+.-.-++.-.++.+.= ---++...|++.++=...++++||+|- ..+.++-+.. T Consensus 220 ------------~~~~~~~~~~-~pf~s~~~e~~~~~~~~l-~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~al~d~k~ 285 (559) T protein:vir:95 220 ------------RDTSKLDSKN-KPFKSVYYEVGGDNDKLL-RESGFDEFPIMAPRWEVNGEDVYGSSCPGMLALGPVKA 285 (559) T ss_pred ------------cccccccccc-ceEEEEEEEecCCCceee-ecCCcccCCccceeeeecCCccccccchHHHhhHHHHH Confidence 1111122111 011000000000100000 012345688888888888999999995 9999999999 Q ss_pred HHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCC---ceEEec-cccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNN---KIYRVN-GVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 281 Ln~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~---k~~~ld-~~~~la~~~~~~d~L~~~l 356 (527) ||+.--.....+++.-+|.+.. + ++|+..++.+.||.++-.+..+ .+.-+- ..+++....+-++.+..+| T Consensus 286 L~~l~~~~l~~~~~~~~pp~~v---~---~~~~~~~~~l~pgg~~~~~~~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI 359 (559) T protein:vir:95 286 LQLLQKRKSQLIDKATNPPMVA---P---TSLKNQRASLLPGDITYIDQITGQDGFRPAYLVNPSTADLVADIQDTRQII 359 (559) T ss_pred HHHHHHHHHHHHHHHhcCceec---c---ccccccceeeeccceeeeCCCCCcccceeecccccchHHHHHHHHHHHHHH Confidence 9999999999999998886553 1 1233344667899886554332 222221 1135666666677777777 Q ss_pred HHhhcCc-hhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-------- Q lcl|Aclame:pro 357 QQTKGIP-DIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-------- 427 (527) Q Consensus 357 ~~vs~tP-~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-------- 427 (527) ...--+- -..++..+.... .|=++. .++++|...++.++.++..+++.-++.+.-.++...+. T Consensus 360 ~~af~~d~~~~l~~r~~~rv---TAtEV~-----~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~l 431 (559) T protein:vir:95 360 NSAYFVDLFMMLQNINTRSM---PVEAVI-----EMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRKNMLPPPPDVM 431 (559) T ss_pred HHHhhhhhHHHhhcCCCCCC---CHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc Confidence 6543221 111222232211 133332 45677777777777777666554333332111111100 Q ss_pred cceeEEEEeCCCCCCCHHHHH----------HHHHHHHhc-----CCccHHHHHHHHHHhcCCCC----chHHHHHHHHH Q lcl|Aclame:pro 428 KKLTVTITFRDPKPVNNEKRF----------AQLLELWEA-----GLIPAKKLTEELSKIMGFEL----TEEDFRQATED 488 (527) Q Consensus 428 ~~~~v~v~w~d~lP~D~~~~i----------~~~v~l~~a-----Glls~~ta~~~L~~~g~~~~----~e~~~~~~~e~ 488 (527) ..-.+.|.+-.+|- +.+.. +.+..+-+. -.+-.+.+++.+.++.|.+. ++++++++-+. T Consensus 432 ~~~~i~v~~is~La--~aqk~~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~rqq 509 (559) T protein:vir:95 432 EGMPLKVEYISVMA--QAQKSIGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPTVIVPQEQVEQARQQ 509 (559) T ss_pred cCcceEEEeecHHH--HHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchhhcCCHHHHHHHHHH Confidence 01123444434443 33322 222233222 23778899999988888665 33443332111 Q ss_pred HHH-HHH------HHHHhcCcccccccccCCCCccccc------ccCCCCC Q lcl|Aclame:pro 489 KKT-QGI------AQAEAADPFGAQMAAEQGIPDEEDD------QALNGQP 526 (527) Q Consensus 489 ~a~-~a~------~~~aa~d~~g~~~~~d~g~~d~~~~------~~~~~~~ 526 (527) .+. ++. ...|+......+.+.. ..|+.-.. ..++.++ T Consensus 510 r~~~qq~~q~~~~~~~aa~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 559 (559) T protein:vir:95 510 RAQQQQQQQMMAMGMAAAQGVKTLSEAKT-SDPSVLSAMANAVSGQGGQSQ 559 (559) T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccC-CChhHHHHHHHhhcCccccCC Confidence 111 110 0001111000000110 11111111 1111111 No 103 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.35 E-value=1.6e-11 Score=79.77 Aligned_cols=412 Identities=10% Similarity=0.082 Sum_probs=204.9 Q ss_pred hhhhhhhhHHhhcccCCCC--CCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhhhc Q lcl|Aclame:pro 5 KRQYGSTQQLRAGEANFPN--AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLG 82 (527) Q Consensus 5 ~~qy~~~~~~~~~~~~~~~--~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg 82 (527) -+-=++...|..|-+.--. +-...-...+..|. |.+.|..+ +-++|+||+++.-+ T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-l~a~Y~~~---------------------~l~~~~vd~~a~d~- 57 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYSPSLSLTDDLVQ-LEALWRDN---------------------WIANKVCIKRPEDM- 57 (437) T ss_pred CchhhhhHhHHhcCCCccccceeecCccccccHHH-HHHHHHhC---------------------chhhHHhhcchHHh- Confidence 1111222222222111000 00001111122333 33444221 22789999988865 Q ss_pred cCccccccCcchh--HHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCC Q lcl|Aclame:pro 83 QGLKWEFSKKDAK--VDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) Q Consensus 83 ~~~~~~i~~~~~~--v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~ 160 (527) +-.++.|++.+.+ .-+.++.++++=++..++..+-||+=+-|.|+..|.-|- ++ ++ ..++| T Consensus 58 ~r~~~~i~~~d~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~-~~----~~-~pl~~----------- 120 (437) T protein:vir:52 58 VRNWREIYSNDLNSKQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDS-QN----TS-APLKP----------- 120 (437) T ss_pred hcCCceEecCCCCHHHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecC-CC----cc-ccccc----------- Confidence 7667788776543 335677777766788999999999988898876665542 21 11 11222 Q ss_pred CCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcc Q lcl|Aclame:pro 161 PGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE 240 (527) Q Consensus 161 ~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~ 240 (527) .+.+.+++..+.|...-... .. ..|. ..=+..-..|...+=. ....++..+ T Consensus 121 ~~~~~~~~v~~~~~v~~~~~--------------~~--~dp~--s~~fg~p~~y~v~~~~--~~~~iH~SR--------- 171 (437) T protein:vir:52 121 TERLKRLIILPKWKISPTGT--------------KD--DDVL--SPNFGRYSEYSILGGS--QSITVHHSR--------- 171 (437) T ss_pred CCceeEEEEechhhcccccc--------------cc--cccc--ccccCcceEEEEecCC--cceeEccce--------- Confidence 13455555433222110000 00 0000 0000000111110000 000111111 Q ss_pred cccccccccccceEeeCCC---CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCC-CcCCCCcc-- Q lcl|Aclame:pro 241 EEPLPEQITTLPVFHFRGH---PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAP-PRDSRGNM-- 314 (527) Q Consensus 241 e~~l~~pi~~iPVV~~pN~---~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~-~~d~~G~~-- 314 (527) |+||.+. .+.+..||.|-|+.+..-+....++.--....+.....+++.+.+.. ..+..++- T Consensus 172 ------------ii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~l~~~~~~~~ 239 (437) T protein:vir:52 172 ------------LIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKIDIFKIAGLSDKIAAGMENEV 239 (437) T ss_pred ------------eEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecchHHHHhcCCcHHHH Confidence 3344332 24578999999999888777777766665555555667777776533 22222210 Q ss_pred ---c-cee--cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCch-hhcccccccccccHHHHHHHhcc Q lcl|Aclame:pro 315 ---V-PWT--ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD-IAVGVVDAAVAESGIALDLKLSA 387 (527) Q Consensus 315 ---~-p~~--v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~-va~G~~d~s~a~SG~ALql~~~P 387 (527) . -+. -+-+.+.-++.+.+|..++. +++++.+.++....+|+..+++|. +-||+. ++.-.||-.=.-.|- T Consensus 240 ~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~--~~sgl~~~l~~~~~~iaaa~~iP~t~L~G~s-~~Glasge~D~~~yy- 315 (437) T protein:vir:52 240 ASVISAVQEIKSATNSLLLDAENEYDRKEL--TFTGLKDLLTEFRNAVAGAADMPVTILFGQS-VSGLASGDEDIQNYH- 315 (437) T ss_pred HHHHHHHHHhcCCCceEEEcCCcceEEEec--CcCCHHHHHHHHHHHHHHHhcCchhhhcCcC-cccccccHHHHHHHH- Confidence 0 000 01244455788888999986 677888888899999999999999 555643 433335544334444 Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH-------HHHHHHHhcCC Q lcl|Aclame:pro 388 ILSSCAEQEL-ELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF-------AQLLELWEAGL 459 (527) Q Consensus 388 Llakv~~krl-~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i-------~~~v~l~~aGl 459 (527) ..++++|- .+.-.++++.+-++. -.++..+. .+++.|++...-+.++.+ +...+++++|+ T Consensus 316 --d~i~~~Qe~~l~p~le~l~~~i~~--------~~~g~~~~--~~~~~f~pL~~~s~kekae~~~~~a~a~~~~~~~g~ 383 (437) T protein:vir:52 316 --EAIRRLQETRLRPIFEIIDPLICN--------ELFGGLPA--DWWFEFVPLTTVKQEQQINMLNTFATAANTLIQNGV 383 (437) T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH--------HhcCCCCC--cceEEeCCcCCcCHHHHHHHHHHHHHHHHHHHhcCC Confidence 45555552 233445444332211 11122121 367789988766644444 44778899999 Q ss_pred ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCC Q lcl|Aclame:pro 460 IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQ 525 (527) Q Consensus 460 ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~ 525 (527) ++.+++..+|.+.|.++-..+ +.+ .+.+-+++.+.+....+..+ ++..+..+++ T Consensus 384 i~~~e~r~~L~~~g~~~~i~~--~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 437 (437) T protein:vir:52 384 LNEYQIANELRESGLFANISA--EHI---------EELKNADEFAGNFEEPEKME-GAQVQNSEDQ 437 (437) T ss_pred CCHHHHHHHHHhcCCCCCCCc--ccc---------ccccCCCCCCCccCCCCCCC-CCCCCCCCCC Confidence 999999999988864332111 111 01122333332222111111 2223333333 No 104 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.34 E-value=1.5e-11 Score=80.00 Aligned_cols=437 Identities=12% Similarity=0.090 Sum_probs=194.9 Q ss_pred CCCChhh--------hhhhhHHh-hcccCCCCCCChHHH-----HHHHH-------HHHHHHHhcCChhheEeeecCCcc Q lcl|Aclame:pro 1 MGQDKRQ--------YGSTQQLR-AGEANFPNAVTDFDK-----ARLAS-------YRLYEDMYLTNTSDYQVILRGGDE 59 (527) Q Consensus 1 m~~~~~q--------y~~~~~~~-~~~~~~~~~v~~~d~-----~Rl~a-------Y~~~~~~y~~~~~~~~~i~~g~d~ 59 (527) |++++.+ |-...+-+ .+.+.+-| ..++|- ....+ +.++..||.+.-- | T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--- 103 (537) T protein:vir:10 35 KPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHP-DMAMDGLDVEGGTFSAYANPNLSEGLVLWYAQQAFI-------G--- 103 (537) T ss_pred hHHHHHHhhhhccCCCCCccCccccccccccc-chhccccccchhhhhhhccccccchhhhhccccCCc-------c--- Confidence 1111111 10000000 00010000 111111 01111 1112233332200 0 Q ss_pred ccccc--ccCCchhHHHHhhhhhhccCccccccCcch-----hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEe Q lcl|Aclame:pro 60 GDQRP--IYVPNGEKLIEAKMRFLGQGLKWEFSKKDA-----KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIG 132 (527) Q Consensus 60 ~~~~~--~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~-----~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~ 132 (527) ++... .+-+-++++||+++.-+ .-.++.|++.+. +..+.|..-+++=++..++..+-||+-+-|.|+..|.= T Consensus 104 ~~l~a~Y~~~~l~r~iVd~~A~d~-~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v 182 (537) T protein:vir:10 104 HQMCALIATHWLVNKACSQMPRDA-MRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIALFKV 182 (537) T ss_pred HHHHHHHHhCchhhhhhhhhhHHh-hcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEee Confidence 01111 12234889999998877 666777877653 22334444344456778999999998889998654432 Q ss_pred --cCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEe-eeCCCCccceeeeeeeeeeeeeecCCccccCCcccee Q lcl|Aclame:pro 133 --DDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDE-YPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY 209 (527) Q Consensus 133 --d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~-~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~ 209 (527) .+.+.- . ..++|+.+ ..+.+.+++.... |..|.-. .|. .. .| ...- T Consensus 183 ~~~D~~~~-~----~Pl~~~~i-------~kg~~k~l~vidp~~~~~~~~----------~~~---~~--dp--~sp~-- 231 (537) T protein:vir:10 183 DSPDPYYY-E----KPFNIDGV-------MPGAYKGIVQIDPYWCAPLLD----------AQA---SS--NP--VSMH-- 231 (537) T ss_pred cCcCCccc-c----cccccccc-------cccceeEEEEechhhcccccc----------hhh---hc--cC--Cccc-- Confidence 221110 0 01111110 0011233322211 1111000 000 00 00 0000 Q ss_pred eecccccccccccccccccccceeeeccCcccccccccccccceEeeCC-CCCCCCccCCccccchHHHHHHHHhhHHHH Q lcl|Aclame:pro 210 TEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRG-HPIMNAMFGRSGLAGLESLIASVNQTMTDE 288 (527) Q Consensus 210 ~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN-~~~~~~~wG~S~Ledl~~l~deLn~~lsd~ 288 (527) ++.+..|.. ....++..++.... -..+|+ ..+...+||.|-|+.+..-+....++.--. T Consensus 232 ---fg~P~~y~v-~g~~iH~SRli~f~----------------g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~ 291 (537) T protein:vir:10 232 ---FYEPTYWLI-NGKKYHRSHLAIYI----------------NDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEG 291 (537) T ss_pred ---cCCceeeee-cCeEecceeEEEec----------------CCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHH Confidence 011111110 01112222221110 000122 123466899999998877777776766666 Q ss_pred HHHHHHhCCceEEeccCCCcCCCCccc----cee--cCCCeeEecCCC-CceEEeccccChHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 289 DLIMVFGGLGFYATDSAPPRDSRGNMV----PWT--ISPLGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKG 361 (527) Q Consensus 289 ~~i~~~~g~P~~~~~g~~~~d~~G~~~----p~~--v~pg~~~el~~~-~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~ 361 (527) ...+......++.+.+........... -+. -.-..++-++.+ ..+.+++. .++++.+-++.....|+.+++ T Consensus 292 ~~l~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~~~r~n~g~~~id~e~e~~e~~~~--~lsgl~~~l~~~~~~iAa~~~ 369 (537) T protein:vir:10 292 PMLAMTKRQTVLKVDAAQVLANKQQFDETMSWWTATRDNYQVRVVDKDNEDVVQIDT--TLNDLDKVIMNQYQLVCAIAR 369 (537) T ss_pred HHHHHhcCCceeeechHHhhcCHHHHHHHHHHHHhhcCCcceeEecCCCceeEEEec--cCCCHHHHHHHHHHHHHhhhC Confidence 666666667777777654332110110 000 012344556664 77787774 788888999999999999999 Q ss_pred Cchh-hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCC Q lcl|Aclame:pro 362 IPDI-AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPK 440 (527) Q Consensus 362 tP~v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~l 440 (527) +|.+ -||+--.+-..||-.=.-.|- ..++++|-.+.-.++++...++.. .++. +..+++.|.+.. T Consensus 370 IP~t~L~G~sp~GlnatGe~D~~~yy---d~I~~~Qe~l~p~l~~l~~ll~~~--------~~~~---~~~~~i~f~pL~ 435 (537) T protein:vir:10 370 TPAPKMLGTVPTGFNSTGDYEEASYH---EECESTQDDMRPLIDRHHQLVCRS--------HLRK---RIRVKVEFPPMD 435 (537) T ss_pred CCceeeccCCccccccchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh--------cCCC---CcceEEEeCCCC Confidence 9996 577432233334555555555 344444433455565554222211 1111 234788999988 Q ss_pred CCCHHHHHH-------HHHHHHhcCCccHHHHHHHHHHhcCCCCc-------hHHHHHHHHHHHHHHHHHHHhcCccccc Q lcl|Aclame:pro 441 PVNNEKRFA-------QLLELWEAGLIPAKKLTEELSKIMGFELT-------EEDFRQATEDKKTQGIAQAEAADPFGAQ 506 (527) Q Consensus 441 P~D~~~~i~-------~~v~l~~aGlls~~ta~~~L~~~g~~~~~-------e~~~~~~~e~~a~~a~~~~aa~d~~g~~ 506 (527) .-|.++.++ ...+++++|+++.+++...|......+++ .++.+.. .. .+. +.+. . T Consensus 436 ~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~----~~---~~~--~~~~--~ 504 (537) T protein:vir:10 436 APKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDI----DV---DDE--GKPV--R 504 (537) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcc----cC---Ccc--CCcC--C Confidence 666665444 47889999999999999998653211111 1111110 00 000 0000 0 Q ss_pred ccccCCCC----------cccccccCCCCCC Q lcl|Aclame:pro 507 MAAEQGIP----------DEEDDQALNGQPL 527 (527) Q Consensus 507 ~~~d~g~~----------d~~~~~~~~~~~~ 527 (527) ...+.|+| +...+++.++.-- T Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 535 (537) T protein:vir:10 505 IIEDQPAPSEMFGATSSGESANDPRDSGAAF 535 (537) T ss_pred CCCCCCCccccCCCCccccccCCCccCcccc Confidence 00111111 1111222222222 No 105 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.32 E-value=3e-11 Score=78.25 Aligned_cols=392 Identities=13% Similarity=0.091 Sum_probs=191.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |. |. ++...++.|..+. .-.. .--.+++.|.+|..|-+| +-++|+||+++.- T Consensus 1 ~~---~~-D~~~n~~~gg~~~-~~~~-~~~~~~~~~~l~a~Y~~~----------------------~l~~~~Vd~~aed 52 (422) T protein:vir:10 1 MV---KT-DSYANIFLGGSDG-SEIY-GSLQNQAPTILASLYADN----------------------ALVRRIIDTIPET 52 (422) T ss_pred Cc---cc-hhhHHHHcCCCCC-cccc-CcccccCHHHHHHHHHhC----------------------hhhHHHHhhhhHH Confidence 32 21 2222233343321 1111 111233445555554321 1278999998887 Q ss_pred hccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCC Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRY 160 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~ 160 (527) + +...++|++.+.+ +++..=+++=++..++..+-||+-+-|.|+..+.-++.++.. ..+++ T Consensus 53 ~-~r~g~~i~~~~~~--~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~-----~Pl~~----------- 113 (422) T protein:vir:10 53 A-LAAGFHIDGIDDE--PAFWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVKDNRALT-----SPVRE----------- 113 (422) T ss_pred H-hcCCccccCCCHH--HHHHHHHHHhhHHHHHHHHHHhhccccceEEEEEecCCCCcc-----ccccc----------- Confidence 7 6666777655433 344433345567789999999999999997666544333211 11222 Q ss_pred CCceEEEEEEEeeeC-CCCccceeeeeeeeeeee-eecCC-ccccCCccceeeecccccccccccccccccccceeeecc Q lcl|Aclame:pro 161 PGQVLGVYLVDEYPH-PDSEKKNEKCARVQKYMK-TLDDD-GKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLST 237 (527) Q Consensus 161 ~~~v~~vh~a~~~~~-pd~~~~~~k~~rr~~~~~-~~~~~-g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~ 237 (527) .+.+.+++..+.|.. |. +|.. +..++ |.| ..|...+-..-....+|.-++ T Consensus 114 ~g~~~~l~v~d~~~i~~~------------~~~~dp~s~~fg~P----------~~y~v~~~~~~~~~~iH~SRl----- 166 (422) T protein:vir:10 114 GAELETVRVYDRTQVKVQ------------TREENPRNARFGEP----------LTYRITTNESDMFYDVHYSRI----- 166 (422) T ss_pred cCceeeEEeeccccccch------------hcccCccccccCcc----------eEEEEecCCCCcceeecccee----- Confidence 124555554432221 10 0100 00000 111 111110000000011222221 Q ss_pred CcccccccccccccceEeeCC------CCCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC-cC Q lcl|Aclame:pro 238 LTEEEPLPEQITTLPVFHFRG------HPIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP-RD 309 (527) Q Consensus 238 ~~~e~~l~~pi~~iPVV~~pN------~~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~-~d 309 (527) +||.+ ..+.+..||.|-|+. +..-+....++.--....+......++.+.+... .+ T Consensus 167 ----------------i~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~ 230 (422) T protein:vir:10 167 ----------------HIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAKGLAELCD 230 (422) T ss_pred ----------------EEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhcC Confidence 22222 235688899999987 4454444444444433333334466676665332 21 Q ss_pred -CCCccc---------ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchh-hcccccccccccH Q lcl|Aclame:pro 310 -SRGNMV---------PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDI-AVGVVDAAVAESG 378 (527) Q Consensus 310 -~~G~~~---------p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~v-a~G~~d~s~a~SG 378 (527) +.++.. ...-.-+.|.-.+++..|..++. +++++.+-++..+..|+..+++|.+ -||+.-.+-+.+| T Consensus 231 ~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~--~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatg 308 (422) T protein:vir:10 231 DSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNS--DIGGIDAFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQ 308 (422) T ss_pred CccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEec--ccCChHHHHHHHHHHHHhhhCCCeeeeccCCcccccccc Confidence 222110 00112455555677788998886 7888999999999999999999996 5564422222245 Q ss_pred HHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH-------HH Q lcl|Aclame:pro 379 IALDLKLSAILSSCAEQEL-ELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF-------AQ 450 (527) Q Consensus 379 ~ALql~~~PLlakv~~krl-~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i-------~~ 450 (527) -.-.-.|- ..++++|- .+.-.++++.+-+ +. .. ..++.|++...-+.++.+ +. T Consensus 309 d~d~~~yy---d~i~~~Qe~~l~p~l~~l~~~i----~~--------s~----~~~~~f~pL~~~sekekaei~~~~a~a 369 (422) T protein:vir:10 309 NTALETFH---KLVDRKRNAELLPILEFLIPFI----VN--------AE----EWSVEFNPLAQESSKDKAEILEKNVNS 369 (422) T ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh----cc--------cC----CcEEEeCCCCCCCHHHHHHHHHHHHHH Confidence 54444555 44444442 2334454443222 11 11 256789988877766443 44 Q ss_pred HHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 451 LLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 451 ~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) ..+++++|+++.+++.+.|...+...........+ .+. ++...++ .-.|..+| T Consensus 370 ~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~--~~~-----~~~~~~~---------~~~~~~~d 422 (422) T protein:vir:10 370 IAALIAAGAMDIDEARDTLRTIAPEVKINDGSVET--EVT-----ISETSND---------PLEVPTDD 422 (422) T ss_pred HHHHHhcCCCCHHHHHHHhhhhcccccCCCCCCcc--ccc-----hhhcCCC---------CCCCCCCC Confidence 56788899999999998886654322222221111 010 1111111 00111111 No 106 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.31 E-value=2.7e-11 Score=78.57 Aligned_cols=422 Identities=14% Similarity=0.093 Sum_probs=191.1 Q ss_pred CCCChhhhhhhhHHhhcccCCCC----CCChHHHH---------HHHHHHHHHHHhcCChhheEeeecCCcccccccccC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPN----AVTDFDKA---------RLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~----~v~~~d~~---------Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~ 67 (527) +-.++..|.+.. ..++.+++. .=..++++ -+-.|.+|+.|.+ - T Consensus 39 ~~~~~~~~~~~~--~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~----------------------~ 94 (532) T protein:vir:94 39 HEIDPTAYSPYE--RNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPTLALLAQ----------------------L 94 (532) T ss_pred hhhccccccccc--ccccccccccccccCcccccccccccccccccchHHHHHHHHc----------------------C Confidence 222222222111 012222111 00112222 2233444433321 1 Q ss_pred CchhHHHHhhhhhhccCccccccCcch-hHHH----HHHHHHHhcCchhhHHHHhHhhhhcccEEEEEE--ecCCCCC-- Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDA-KVDD----AIRVLFDRENWEQKFESLKRWTEIRGDYVLLLI--GDDEKDE-- 138 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~-~v~~----~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~--~d~~k~~-- 138 (527) +-++|+||+++.=+ .-..+++++.+. +.+. .|+.-+++=++..++..+-||+-+-|.|+-.|. .++.... T Consensus 95 ~l~r~~Vd~~aed~-~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~ 173 (532) T protein:vir:94 95 PEYRTMHETPADEC-VRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPAD 173 (532) T ss_pred chhhhhhccchHHH-hhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEeccCCcccccc Confidence 23678888877754 555667766543 2222 333322223466788899999888899964332 2111100 Q ss_pred ------------ccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCcc Q lcl|Aclame:pro 139 ------------GSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGA 206 (527) Q Consensus 139 ------------~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~ 206 (527) |.-..|..+||..+.|...... -+..-+| T Consensus 174 ~p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~--dp~sp~f------------------------------------- 214 (532) T protein:vir:94 174 APLLLSPSFVQRGCLIGFATIEPMWLSPNAYNAT--DPTLPSF------------------------------------- 214 (532) T ss_pred ccccccccccccceeeEEEeechheecccccccc--ccccccc------------------------------------- Confidence 0001223334433333210000 0011111 Q ss_pred ceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCC-CCCCCccCCccccchHHHHHHHHhhH Q lcl|Aclame:pro 207 IKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGH-PIMNAMFGRSGLAGLESLIASVNQTM 285 (527) Q Consensus 207 i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~-~~~~~~wG~S~Ledl~~l~deLn~~l 285 (527) ..+..|.-.....++..++.... + -.+|+. .+....||.|-|+.+..-+....++. T Consensus 215 -------g~P~~y~v~~g~~iH~SRli~f~-g---------------~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~ 271 (532) T protein:vir:94 215 -------YKPDSWIATSGKKIHSSRIHTVV-G---------------RPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTR 271 (532) T ss_pred -------CCceeEEEccCeeeccceEEEec-C---------------CCchhhhccccccccccHHHHHHHHHHHHHHHH Confidence 11111111111122222221110 0 001121 23466799999998777777766666 Q ss_pred HHHHHHHHHhCCceEEeccCCCcCCCCccc------ceec--CCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 286 TDEDLIMVFGGLGFYATDSAPPRDSRGNMV------PWTI--SPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 286 sd~~~i~~~~g~P~~~~~g~~~~d~~G~~~------p~~v--~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l 356 (527) --....+......++.+......+..|... -+.. .-..++-++ ++..|..++. .++++.+-++.....| T Consensus 272 ~~~~~l~~~~~~~v~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~~--~lsgl~~~l~~~~~~i 349 (532) T protein:vir:94 272 QSVSDTVKQFSMTNLATDMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQTNT--PLSGLDSLQAQSQEQM 349 (532) T ss_pred HHHHHHHHhcCCceeeechHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCceeEEEec--ccCCHHHHHHHHHHHH Confidence 555555555556666654332222222110 0111 112344465 4578888875 6888888999999999 Q ss_pred HHhhcCchh-hcccccccccccHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEE Q lcl|Aclame:pro 357 QQTKGIPDI-AVGVVDAAVAESGIALDLKLSAILSSCAEQELE-LKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTI 434 (527) Q Consensus 357 ~~vs~tP~v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~-~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v 434 (527) +..+++|.+ -||+.-.+-+.+|-.=.-.|- ..++.+|-. +.-.++++.+.++.. .++..+. -.++ T Consensus 350 Aaa~~IP~t~LfG~sp~GlnstGe~D~~~yy---d~I~s~Qe~~l~p~le~l~~~l~~s--------~~g~~~~--d~~~ 416 (532) T protein:vir:94 350 AAVSHIPLVKLLGITPNGLNASSDGEIRVWY---DFIAGYQATNLTPLMEWIIDLIQLS--------EYGQIDP--GLAW 416 (532) T ss_pred HhHhCCCeeeeecCCcccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH--------hcCCCCC--CceE Confidence 999999996 677432222233443344454 555555532 334454544333211 1222221 2678 Q ss_pred EeCCCCCCCHHHHH-------HHHHHHHhcCCccHHHHHHHHHHhcCCCCch-----HHHHHHHHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 435 TFRDPKPVNNEKRF-------AQLLELWEAGLIPAKKLTEELSKIMGFELTE-----EDFRQATEDKKTQGIAQAEAADP 502 (527) Q Consensus 435 ~w~d~lP~D~~~~i-------~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e-----~~~~~~~e~~a~~a~~~~aa~d~ 502 (527) .|.+...-|.++.+ +...+++++|+++.+++.++|....-..+.. ++...+.+. .........++ T Consensus 417 ~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 493 (532) T protein:vir:94 417 EWSPLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEI---AKQLMAAALNP 493 (532) T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccch---hhhhcccccCC Confidence 89998755555433 3446799999999999999884332111111 111111111 11111222333 Q ss_pred ccccccccCCCCcccccccCC-----------CCCC Q lcl|Aclame:pro 503 FGAQMAAEQGIPDEEDDQALN-----------GQPL 527 (527) Q Consensus 503 ~g~~~~~d~g~~d~~~~~~~~-----------~~~~ 527 (527) ....-.+..+-|+.++|+..| -+|+ T Consensus 494 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 529 (532) T protein:vir:94 494 PATAPQTPNPQPDSEDDQTDNQPDAQADPAQNDQPV 529 (532) T ss_pred CCCCCCCCCCCCCCCCCCCCCccCCCccccccCCCc Confidence 322112222334444444433 2333 No 107 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=99.31 E-value=1.4e-10 Score=74.62 Aligned_cols=473 Identities=12% Similarity=0.076 Sum_probs=240.1 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccc---ccccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQ---RPIYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~---~~~~~p~~~k~v~~~ 77 (527) |.++...=. ..+.+.+..+ -..=..-+.+++.|.+|-.-.-..+...-++++.... ..++.+-|.+.+++. T Consensus 1 m~~d~~~~~--~~l~~r~~~l----~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~L 74 (549) T protein:vir:10 1 MTNDDAKIL--QALNADHGRM----KEKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNF 74 (549) T ss_pred CCcchHHHH--HHHHHHHHHH----HHHhhhHHHHHHHHHHHhccccccccccCCCCCCcccccccccccchHHHHHHHH Confidence 777653311 2222223221 1112234667888888854332222222222222222 346788889999998 Q ss_pred hhhhccCc-----ccc-ccCcc------hhHHHHHH-------H--HHHhcCchhhHHHHhHhhhhcccEEEEEEecCCC Q lcl|Aclame:pro 78 MRFLGQGL-----KWE-FSKKD------AKVDDAIR-------V--LFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEK 136 (527) Q Consensus 78 ~~~Lg~~~-----~~~-i~~~~------~~v~~~lr-------~--w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k 136 (527) ++.|+.+. +|| ++..+ .+|+++|. . ...+.|+..-+-++=+..++-|-|++++..|+.| T Consensus 75 As~l~~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~ 154 (549) T protein:vir:10 75 VAAMDSMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGK 154 (549) T ss_pred HHHHHhhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCC Confidence 88885332 454 33332 22344442 2 1235778888888888888889999999887655 Q ss_pred CCccceEEEEEccceEEEEecCCCCCceEEEE---------EEEeee---CCCCccceee--eeeeeeee--eeecCCcc Q lcl|Aclame:pro 137 DEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVY---------LVDEYP---HPDSEKKNEK--CARVQKYM--KTLDDDGK 200 (527) Q Consensus 137 ~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh---------~a~~~~---~pd~~~~~~k--~~rr~~~~--~~~~~~g~ 200 (527) .+.++.+.-+.|+-..|+. |+|..|+ ++.+|. +|++-+...+ --.+.+.. .++..+.. T Consensus 155 ----~~~f~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~~V~pr~~~~ 228 (549) T protein:vir:10 155 ----GIVYRNVPMQRLWFAENNS--GLIDKTHVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYHAVEPRADRD 228 (549) T ss_pred ----eeEEEEEEcCeEEEeeCCC--CCeEEEEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEEEeecCCCCC Confidence 4567788888888888764 6777765 222333 2222110000 00011100 00111111 Q ss_pred ccCCccceeeecccccccccccccccccccceeeeccCcc-ccccc-ccccccceEeeCCCCCCCCccCCccccchHHHH Q lcl|Aclame:pro 201 PVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE-EEPLP-EQITTLPVFHFRGHPIMNAMFGRSGLAGLESLI 278 (527) Q Consensus 201 p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~-e~~l~-~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~ 278 (527) +++++.+ .-++.++...+. ...|. .++...|++.++=...++++||+|=.++.++-+ T Consensus 229 ---------------~~~~~~~------~~pf~sv~~e~~~~~il~esg~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~ 287 (549) T protein:vir:10 229 ---------------PRKLDGR------NMQFASYWLDEGRDRIVQNSGFRTFPFAIGRFYVGTDDVYGGSPAYDAMPDV 287 (549) T ss_pred ---------------ccccccc------cCceEEEEEEecCCEeeccCCcccCCcceeeeeecCCCccccchHHHHHHHH Confidence 1111110 011211111000 11121 245668999998888899999999999999999 Q ss_pred HHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEe--cC--CCCceEEeccccChHHHHHHHHHHHH Q lcl|Aclame:pro 279 ASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVE--HG--QNNKIYRVNGVASLEPSQTHMNKAEE 354 (527) Q Consensus 279 deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~e--l~--~~~k~~~ld~~~~la~~~~~~d~L~~ 354 (527) ..||+.--.....++..-+|++-. ++ ++..+ +..+.||.+.- .+ .+..+..+....++...++-++.+.. T Consensus 288 k~L~~l~~~~l~~~~~~~~p~~~v---~~-~g~~~--~~~l~pgg~~~~~~~~~~~~~~~pl~~~~~~~~~~~~i~~~~~ 361 (549) T protein:vir:10 288 RMANDMAKTNIRGAQKLVDPPLLA---NE-DGVLD--GFDLRSGALNWGGLNDKGEEMVKPLLTGKQAQIGIEFAQDTRQ 361 (549) T ss_pred HHHHHHHHHHHHHHHHHhcCceee---cc-ccccc--cceeccCCccccccCCCCccceeeeccccchhHHHHHHHHHHH Confidence 999999999999999999987664 11 12222 34456666532 12 22345555555577777777777777 Q ss_pred HHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc------- Q lcl|Aclame:pro 355 AMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD------- 427 (527) Q Consensus 355 ~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~------- 427 (527) +|...=-......- -|..+. .|=++. .++++|+..++.++.++..+++.=++.+.-.++...+. T Consensus 362 rI~~af~~d~~~~~-~~~~~~---TAtEV~-----~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r~g~lP~~p~~ 432 (549) T protein:vir:10 362 TINQWFYVTLFQIL-VDSGDM---TATEVL-----QRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAEAGQLPDMPQE 432 (549) T ss_pred HHHHHHhhhhhhhh-cCCCCc---cHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChh Confidence 77664322211110 122221 133332 56777788888888887766655443332212211111 Q ss_pred ---cceeEEEEeCCCCCCCHHHHHHH----------HHHHHhcC-----CccHHHHHHHHHHhcCCCC----chHHHHHH Q lcl|Aclame:pro 428 ---KKLTVTITFRDPKPVNNEKRFAQ----------LLELWEAG-----LIPAKKLTEELSKIMGFEL----TEEDFRQA 485 (527) Q Consensus 428 ---~~~~v~v~w~d~lP~D~~~~i~~----------~v~l~~aG-----lls~~ta~~~L~~~g~~~~----~e~~~~~~ 485 (527) ....+.|.+=. |-.+.+..+. +..+-+.+ .|-.+.+++.+.++.|.+. ++++++++ T Consensus 433 l~~~~~~~~i~yis--~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~ 510 (549) T protein:vir:10 433 LIDAGADVDVEYDS--PLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQ 510 (549) T ss_pred hhcCCceeEEEeec--HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHH Confidence 12234455433 3333333332 22332333 3777899999999988766 55665554 Q ss_pred HHHHHHHHH-HHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 486 TEDKKTQGI-AQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 486 ~e~~a~~a~-~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) -+..+.++. .+.+++-+.+++++.|. .+-.+.+++--- T Consensus 511 r~~~~~qqq~~~~~~~a~~a~~~a~~~-~~~~ta~~~~~~ 549 (549) T protein:vir:10 511 QAAEAQAAQMQQMLAAAPVAAGAIKDL-SDAQTAAQTARV 549 (549) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcCCCcccCC Confidence 322222211 11222222333332211 111111111111 No 108 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=99.30 E-value=1.6e-10 Score=74.24 Aligned_cols=483 Identities=12% Similarity=0.074 Sum_probs=236.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.-..++ .+.+.+..+-+ .=..-+.+++.|.+|..-.-..+..--...+......++.+-|.+.+++.++. T Consensus 1 m~~~~~~-----~l~~r~~~l~~----~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~Las~ 71 (556) T protein:vir:73 1 MAETEKE-----RLLKQLAQLKN----ERTSFESHWLDLSDFINPRGSRFLTSDVNRDDRRNTKIVDPTGSMAQRILSSG 71 (556) T ss_pred CChhhHH-----HHHHHHHHHHH----HhhHHHHHHHHHHHHhccccCCcCCCCCCcchhhcCccccchHHHHHHHHHHH Confidence 6553322 23333333111 01122678888889853321111000001111123467888899999998888 Q ss_pred hcc-----Ccccc-ccCcc------hhH-------HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 81 LGQ-----GLKWE-FSKKD------AKV-------DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 81 Lg~-----~~~~~-i~~~~------~~v-------~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) |+. +.+|| ++..+ .+| .+.+..-+.+.|+...+-++-+..++-|-|+.++..|+.+ . T Consensus 72 l~~~ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~----~ 147 (556) T protein:vir:73 72 MMSGITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMEDDQD----V 147 (556) T ss_pred HHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeecCCc----e Confidence 853 22454 22222 223 4444556778889999999999999999999999888755 4 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEEE---------eee---CCCCccceeeeeeeeeeeeeecCCccccCCcccee Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVD---------EYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY 209 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~---------~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~ 209 (527) ++++.+..+.|+-..|+. |+|-.|+--. +|- .|++-. +...+..|.. + +.-.-+.+ T Consensus 148 ~r~~~~~l~~~~~~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~v~---~~~~~~~~~~------~-~~v~~~V~ 215 (556) T protein:vir:73 148 IRTMPFPIGSYYLANSPR--GSVDTCIRQFSMTVRQMVQEFGLDNVSTSVK---GMWENGTYET------W-VEVNHCIT 215 (556) T ss_pred EEEEEeecceeEEeeCCC--CCeEEEEEEEeccHHHHHHHcCcccCCHHHH---HHHhcCCccc------e-EEEEEEEe Confidence 667889998888777654 5666664221 121 111100 0000000000 0 00000000 Q ss_pred eecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCcc-ccchHHHHHHHHhhHHHH Q lcl|Aclame:pro 210 TEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSG-LAGLESLIASVNQTMTDE 288 (527) Q Consensus 210 ~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~-Ledl~~l~deLn~~lsd~ 288 (527) .......++|+..+ +|+.-.-++.-.++.++= ---++...|++.++=...++++||+|- .++.++-+..||+.--.. T Consensus 216 pr~~~~~~~~~~~~-~p~~s~~~~~~~~~~~vl-~esg~~e~P~~~~Rw~~~~ge~YGrg~P~~~~lgD~k~L~~l~~~~ 293 (556) T protein:vir:73 216 PNVNRDSGKMDSKN-KPYRSVYFESGGDSDKLL-RESGFDEFPILAPRWEVNGEDVYASSCPGMLALGQVKALQVEQKRK 293 (556) T ss_pred ccccccccccCccc-ceEEEEEEEecCCCceec-ccCCcccCCceeeeeeecCCcccccCccHHHhHHHHHHHHHHHHHH Confidence 00111112222111 011110011001111110 012456789999999889999999995 999999999999998888 Q ss_pred HHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecC---CCCceEEec-cccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 289 DLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHG---QNNKIYRVN-GVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 289 ~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~---~~~k~~~ld-~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) ...+++.-+|.+-. + ++|+..++...||.+.-.+ ..+.+..+. +.+++....+.++.+..+|...--+.- T Consensus 294 l~~~~~~~~pp~~v---~---~~~~~~~~~~~pgg~~~~~~~~~~~~i~p~~~~~~d~~~~~~~i~~~~~rI~~af~~d~ 367 (556) T protein:vir:73 294 AQLIDKATNPPMVA---P---TSLKNQRVSLLPGDVTYLDVISGQDGFKPAYLVNPNTADLLADIQDTRQTINSAYFVDL 367 (556) T ss_pred HHHHHHHhcCceec---c---ccccccceeeccCccccccCCCCccceeeeccccccHHHHHHHHHHHHHHHHHHhhcch Confidence 99999998886553 1 1233344667788764222 222344432 335778788888888888876443221 Q ss_pred h-hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc--------cceeEEEE Q lcl|Aclame:pro 365 I-AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD--------KKLTVTIT 435 (527) Q Consensus 365 v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~--------~~~~v~v~ 435 (527) . -++..|.... .|=++. .++++|...++.++.++..+++.-++.+.-.++...+. ..-.++|. T Consensus 368 ~~~l~~~~~~r~---TAtEv~-----~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l~~~~i~v~ 439 (556) T protein:vir:73 368 FMMLQNINTRSM---PVEAVI-----EMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMARKNMLPEPPDVLQGMPLRIE 439 (556) T ss_pred hhhhccCCCCCc---cHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhcCceeEEE Confidence 0 1222233211 133332 45677777777777777666554333332111111100 01124445 Q ss_pred eCCCCCCCHHHHHHHH----------HHHHhcC-----CccHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 436 FRDPKPVNNEKRFAQL----------LELWEAG-----LIPAKKLTEELSKIMGFEL----TEEDFRQATEDKKTQGIAQ 496 (527) Q Consensus 436 w~d~lP~D~~~~i~~~----------v~l~~aG-----lls~~ta~~~L~~~g~~~~----~e~~~~~~~e~~a~~a~~~ 496 (527) +-.++ ...+....+ ..+-+.+ .+-.+.+++.+.++.|.+. +.++++++-+..+.++.+. T Consensus 440 yis~L--a~aqk~~~~~~i~~~~~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~rq~r~~~qq~~ 517 (556) T protein:vir:73 440 YISVM--AQAQKSIGLTSLSQTVGFIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSPTVIVPQEQVQGIREERAKQAQAA 517 (556) T ss_pred eecHH--HHHHHHHHHHHHHHHHHHHHHHhccChhhHhcCCHHHHHHHHHHHcCCChhhcCCHHHHHHHHHHHHHHHHHH Confidence 44444 333333222 2222221 3777889999988888665 4444444322211111111 Q ss_pred H-HhcCcccccc---cccCCCCcc-----cccccCCCCC Q lcl|Aclame:pro 497 A-EAADPFGAQM---AAEQGIPDE-----EDDQALNGQP 526 (527) Q Consensus 497 ~-aa~d~~g~~~---~~d~g~~d~-----~~~~~~~~~~ 526 (527) + ++.-..++.+ +++.+.++. .-...+.+++ T Consensus 518 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 556 (556) T protein:vir:73 518 QAMAMGQAAAQGAKTLSETQTSDPSALTAIANAAGAPQQ 556 (556) T ss_pred HHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHhhcCCCC Confidence 1 1000011111 122221110 1111122222 No 109 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.26 E-value=5.8e-11 Score=76.69 Aligned_cols=398 Identities=13% Similarity=0.140 Sum_probs=199.1 Q ss_pred CC-CChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MG-QDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~-~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |+ ++.+-| ..|+.|... +-.-.. -.-...|.+|..|-+|- + ++|+||.++. T Consensus 1 ~~~~~~d~~---~~~~~~~~~--~~~~~~-~~~~~~~~l~a~Y~~~~------------------l----~~~~Vd~~ae 52 (427) T protein:vir:10 1 MKIVKHDGY---NDIFNGGAD--GSPKPF-FMSDASYHVGSFYNDNA------------------T----AKRIVDVIPE 52 (427) T ss_pred CCccccchH---HHHhhcCCC--CcccCc-cccCchHHHHHHHHcCc------------------h----hhhhhccchH Confidence 54 333444 345544322 110000 01124577665543221 2 7799999888 Q ss_pred hhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCC Q lcl|Aclame:pro 80 FLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPR 159 (527) Q Consensus 80 ~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d 159 (527) -+ ....++|++...+ +++..-+++=++..++..+-||+-+-|.|+..+.-++.++. ++. .. T Consensus 53 d~-~r~g~~i~g~~~~--~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l---------~~p-----~~-- 113 (427) T protein:vir:10 53 EM-VTAGFKMSGVKDE--KEFKSLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRML---------TSQ-----AK-- 113 (427) T ss_pred Hh-hcCCccccCccHH--HHHHHHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCcc---------ccc-----cC-- Confidence 77 6666778765433 34444334445778999999999999999876665554431 110 11 Q ss_pred CCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCc Q lcl|Aclame:pro 160 YPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLT 239 (527) Q Consensus 160 ~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~ 239 (527) ..+.+.+++-.+.|..... .+. . +| .+.=+..-..|...+-.......++.-+ T Consensus 114 ~~g~l~~l~v~d~~~~~~~-----------~~~----~--dp--~s~~fg~P~~y~v~~~~~~~~~~iH~SR-------- 166 (427) T protein:vir:10 114 PGAKLEGVRVYDRFAITVE-----------KRV----T--NA--RSPRYGEPEIYKVSPGDNMQPYLIHHSR-------- 166 (427) T ss_pred CCcceeEEEEechhccccc-----------ccc----c--Cc--cccccCcceEEEEecCCCCcceEEcccc-------- Confidence 1245667765543332100 010 0 00 0000001111211110000000122211 Q ss_pred ccccccccccccceEeeCCC------CCCCCccCCccccc-hHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc--CC Q lcl|Aclame:pro 240 EEEPLPEQITTLPVFHFRGH------PIMNAMFGRSGLAG-LESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR--DS 310 (527) Q Consensus 240 ~e~~l~~pi~~iPVV~~pN~------~~~~~~wG~S~Led-l~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~--d~ 310 (527) ++||.+. .+.+..||.|-|+. +..-+....++.--..-.+......++.+.+..-. ++ T Consensus 167 -------------li~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~~~~ 233 (427) T protein:vir:10 167 -------------VFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMCDDD 233 (427) T ss_pred -------------EEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhcCc Confidence 2223222 34578999999875 55544445444444443333344556656554321 12 Q ss_pred CCccc---------ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchh-hcccccccccccHHH Q lcl|Aclame:pro 311 RGNMV---------PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDI-AVGVVDAAVAESGIA 380 (527) Q Consensus 311 ~G~~~---------p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~v-a~G~~d~s~a~SG~A 380 (527) .++.. ...-.-+.|.-.+++..|..++. .++++.+-++..+..|+..+++|.+ -||+.-.+-+.+|-. T Consensus 234 ~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~--~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~ 311 (427) T protein:vir:10 234 DAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNS--DISGVPEFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNT 311 (427) T ss_pred cchHHHHHHHHHHHHhcCcccceeeecCCCceeEEec--ccCChHHHHHHHHHHHHhhhCCCeeeeccCCccccccchhH Confidence 22210 01112455555677788998886 7888999999999999999999996 556332222234444 Q ss_pred HHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH-------HHHH Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQEL-ELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF-------AQLL 452 (527) Q Consensus 381 Lql~~~PLlakv~~krl-~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i-------~~~v 452 (527) =...|- ..++++|- .+.-.++++.+-+ + ... ..++.|++...-+.++.+ +... T Consensus 312 D~~nyy---d~i~~~Qe~~l~p~l~~l~~~i----~--------~s~----~~~~~f~pL~~~s~kEkaei~~~~a~a~~ 372 (427) T protein:vir:10 312 ALETFY---KLVDRKREEDYRPLLEFLLPFI----V--------DEE----EWSIEFEPLSVPSKKEESEITKNNVESVT 372 (427) T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHh----h--------cCC----CcEEEeCCCCCCCHHHHHHHHHHHHHHHH Confidence 334444 44444442 2334444433221 1 111 257889988877766554 4567 Q ss_pred HHHhcCCccHHHHHHHHHHhcCCCCchHHHHHH-HHHHHHHHHHHHHhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 453 ELWEAGLIPAKKLTEELSKIMGFELTEEDFRQA-TEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 453 ~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~-~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) ++.++|+++.+++.+.|.+.++..-- .+..++ .|... +++ ..+-+.+|++.|+- T Consensus 373 ~~~~~gvi~~~e~r~~L~~~~~~~~~-~~~~~~~~e~~~-----~~~---------e~~p~~~e~~~d~~ 427 (427) T protein:vir:10 373 KAITEQIIDLEEARDTLRSIAPEFKL-KDGNNINIREPE-----ETT---------EPEPGLGEKLEDEN 427 (427) T ss_pred HHHhcCCCCHHHHHHHHHhhhccccC-CCCccccccccc-----hhc---------CCCCCCCCCCCCCC Confidence 88999999999999999777653211 111111 11111 011 12223344444433 No 110 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.26 E-value=4.3e-11 Score=77.40 Aligned_cols=397 Identities=14% Similarity=0.154 Sum_probs=186.5 Q ss_pred CCCChhhhhhhhHHhhcccCCC---------CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFP---------NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGE 71 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~---------~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~ 71 (527) |.=++|-= .--+|+.|.+ +..+. .+ ..|..|.+.|..+ +-++ T Consensus 5 m~~~~~~~----~~~D~~~~~~~~~~g~~~~~~~~~---~~-~~~~~l~~~Y~~~---------------------~l~~ 55 (435) T protein:vir:79 5 MSDKVKAI----TKEDGYNEIFGSKDGTFRPNAFYM---QR-AAFKALSQFYEED---------------------GMAR 55 (435) T ss_pred cccccccc----hhhcchhhhhcccccccccCcccC---Cc-CCHHHHHHHHhcC---------------------chhh Confidence 32221110 0112232211 11111 11 1355555555222 2378 Q ss_pred HHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccce Q lcl|Aclame:pro 72 KLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPST 151 (527) Q Consensus 72 k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~ 151 (527) |+||+++.-+ +...++|+... ..+++..-+++=++..++..+-||+-+-|.|+..|.-.++++. . ..+++. T Consensus 56 ~~Vd~~aed~-~r~g~~i~g~~--~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~-~----~Pl~~~- 126 (435) T protein:vir:79 56 RIVDVIPEEM-VTPGFKVDGVK--NEKSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKML-K----SPVKPG- 126 (435) T ss_pred hhhccchHHh-hcCCceecCCC--hHHHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCc-c----cccccC- Confidence 9999988877 55566665433 2345555444445778999999999999998665554333321 1 122221 Q ss_pred EEEEecCCCCCceEEEEEEEeee-CCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYP-HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~-~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) +.+.+++..+.|. .|. .| .. +| ...-+.+-..|....-.......++.. T Consensus 127 ----------g~i~~i~v~d~~~i~~~------------~~----~~--dp--~sp~fg~P~~y~v~~~~~~~~~~iH~S 176 (435) T protein:vir:79 127 ----------AQLEDIRVYDRYQITIH------------ER----ET--NA--RSVRYGEPKLYKISPGGDIPEFFVHYS 176 (435) T ss_pred ----------CceeeEEeechhhccch------------hh----cc--CC--cccccCcceEEEEecCCCCCceEEcce Confidence 3455665443221 110 00 00 01 000001111121110000011112222 Q ss_pred ceeeeccCcccccccccccccceEeeCC-CCCCCCccCCccc-cchHH-HHHHHHhhHHHHHHHHHHhCCceEEeccCC- Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRG-HPIMNAMFGRSGL-AGLES-LIASVNQTMTDEDLIMVFGGLGFYATDSAP- 306 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN-~~~~~~~wG~S~L-edl~~-l~deLn~~lsd~~~i~~~~g~P~~~~~g~~- 306 (527) ++... . --| +|+ ..+.+..||.|-| +.+.. |.+..+-+-+..+.+.++ ...++.+.+.. T Consensus 177 Rli~~---------~----g~~---~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~-~~~v~~~~~l~~ 239 (435) T protein:vir:79 177 RICII---------D----GER---VSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRK-QQAVWKARDLAL 239 (435) T ss_pred eEEEe---------c----CCc---chhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccccchhHHH Confidence 21110 0 001 112 1345889999987 56655 444443333444444444 45566665533 Q ss_pred CcC-CCCccc---------ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchh-hccccccccc Q lcl|Aclame:pro 307 PRD-SRGNMV---------PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDI-AVGVVDAAVA 375 (527) Q Consensus 307 ~~d-~~G~~~---------p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~v-a~G~~d~s~a 375 (527) ..+ +.++.. -..-.-+.|.-.+++..+..++. +++++.+-++.....|+..+++|.+ -||+.-.+-+ T Consensus 240 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~--~lsgl~~~~~~~~~~iaaa~~IP~t~L~G~s~~gln 317 (435) T protein:vir:79 240 MCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNS--DVSGVPEFLQEKIDRIVALTGIHEIIIKNKNTGGVS 317 (435) T ss_pred hhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEec--ccCCHHHHHHHHHHHHHhhhCCCeeeeccCCccccc Confidence 221 122211 00111355555677778998885 7888999999999999999999994 4674432333 Q ss_pred ccHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHH------- Q lcl|Aclame:pro 376 ESGIALDLKLSAILSSCAEQELE-LKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKR------- 447 (527) Q Consensus 376 ~SG~ALql~~~PLlakv~~krl~-~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~------- 447 (527) .||-.-.-.|- ..++++|-. +.-.++++.+-+ + ... ..++.|++...-|.++. T Consensus 318 stgd~d~~~yy---d~i~~~Qe~~l~p~l~~l~~li----~--------~s~----d~~~~f~pL~~~sekEkAei~~~~ 378 (435) T protein:vir:79 318 ASQNTALETFY---KLIDRKRVEDYKPILEFLLPFM----I--------SET----EWSIEFEPLSVPSDKDKAEIMAKN 378 (435) T ss_pred cchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh----h--------cCC----CCeEEeCCCCCCCHHHHHHHHHHH Confidence 34544444454 444444421 223333332111 1 111 25678999988887544 Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 448 FAQLLELWEAGLIPAKKLTEELSKIMG-FELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 448 i~~~v~l~~aGlls~~ta~~~L~~~g~-~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ++...+++++|+++.+++.++|...++ .++..++..++ + ..++..||....+-+|- T Consensus 379 a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~-~--------------------~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 379 VESVVKLKAEQAINLKETRDTLRSICPDLKIMDNDNIEL-P--------------------EPEDLDPEPGQEGGLNK 435 (435) T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHhccccCCCCcccccC-C--------------------ccccCCCCCCCCCCCCC Confidence 444567788999999988888755432 11221111110 0 01111111111111111 No 111 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=99.24 E-value=3.6e-10 Score=72.35 Aligned_cols=463 Identities=12% Similarity=0.106 Sum_probs=238.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.-.+. .+...+.|..+-+ .=+.=+.+++.|.+|..-.-..+..--.+..+.....++.+-|.+.+++.++. T Consensus 1 M~~~~~----~~~l~~r~~~l~~----~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~ 72 (555) T protein:vir:10 1 MAEQTE----RKLLLSRWGQLRT----ERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAG 72 (555) T ss_pred CCCccc----HHHHHHHHHHHHH----HhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHH Confidence 543331 2223333332110 00112678888888875542222111111111122457888999999998888 Q ss_pred hccC-----cccc-ccCcc------hhHHH-------HHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 81 LGQG-----LKWE-FSKKD------AKVDD-------AIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 81 Lg~~-----~~~~-i~~~~------~~v~~-------~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) |+.+ .+|| ++..+ .+|++ .+..-+.+.|+...+-++=+..++-|-|++++-.|+.+ . T Consensus 73 L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~----~ 148 (555) T protein:vir:10 73 MMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDA----V 148 (555) T ss_pred HHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCc----e Confidence 8532 3554 22221 22433 34456678899999999999999999999999888765 3 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEE---------Eeee---CCCCccceee---eeeeeee--eeeecCCccccCC Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLV---------DEYP---HPDSEKKNEK---CARVQKY--MKTLDDDGKPVPG 204 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a---------~~~~---~pd~~~~~~k---~~rr~~~--~~~~~~~g~p~~~ 204 (527) +.++.+..+.|+-..|+. |+|-.|+-- .+|. .|++....++ ...+.+. ..++..++ T Consensus 149 ~rf~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~----- 221 (555) T protein:vir:10 149 VYHHSLTAGEYAIAADNQ--GRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADR----- 221 (555) T ss_pred EEEEEeecceeEEeeCCC--CCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCc----- Confidence 567788899888877665 567666521 1232 1211100000 0000000 00011111 Q ss_pred ccceeeecccccccccccccccccccceeeeccCcc---ccccc-ccccccceEeeCCCCCCCCccCCccccchHHHHHH Q lcl|Aclame:pro 205 GAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE---EEPLP-EQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIAS 280 (527) Q Consensus 205 g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~---e~~l~-~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~de 280 (527) .+++.+.++ -++..+.-.+. ...|. -++...|++.++=...++++||+|=.++.++-+.. T Consensus 222 ----------~~~~~~~~~------~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~ 285 (555) T protein:vir:10 222 ----------DPSKRDDRN------MAWKSVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQ 285 (555) T ss_pred ----------CcCCCCccc------cceEEEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHH Confidence 111111111 01111110000 01111 23567899999988889999999999999999999 Q ss_pred HHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecC----CCCceEEeccccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHG----QNNKIYRVNGVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 281 Ln~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~----~~~k~~~ld~~~~la~~~~~~d~L~~~l 356 (527) ||+.--..-..++..-+|.+.. + ++|...++...||.+.... +++-.-.+...+++....+-++.+..+| T Consensus 286 L~~l~~~~l~~~~~~~~pp~~v---~---~~~~~~~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI 359 (555) T protein:vir:10 286 LQHEQLRKAQAIDYKSNPPLQL---P---VSAKNQDISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERI 359 (555) T ss_pred HHHHHHHHHHHHHHHhcCceee---c---cccccccceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHH Confidence 9997777778888887775543 1 1222234567788774432 2233334455558888888888888888 Q ss_pred HHhhcCchhh-cccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-------- Q lcl|Aclame:pro 357 QQTKGIPDIA-VGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-------- 427 (527) Q Consensus 357 ~~vs~tP~va-~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-------- 427 (527) ...==..-.. +...|.... .|=++ ..+.++|...++.++.++..+++.-++.+.-.++...+. T Consensus 360 ~~af~~dlf~~l~~~~~~~~---TAtEV-----~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l 431 (555) T protein:vir:10 360 KASFYADLFLMLANGTNPQM---TATEV-----AERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEM 431 (555) T ss_pred HHHhhcchhhhccCCCCCcc---cHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh Confidence 7644322111 111132221 13343 356778888888888887777665444332222211110 Q ss_pred cceeEEEEeCCCCCCCHHHHHHHHH----------HHHhcC-----CccHHHHHHHHHHhcCCCC----chHHHHHHHHH Q lcl|Aclame:pro 428 KKLTVTITFRDPKPVNNEKRFAQLL----------ELWEAG-----LIPAKKLTEELSKIMGFEL----TEEDFRQATED 488 (527) Q Consensus 428 ~~~~v~v~w~d~lP~D~~~~i~~~v----------~l~~aG-----lls~~ta~~~L~~~g~~~~----~e~~~~~~~e~ 488 (527) ....+.|.+-.+| .+.+...++. .+-+.+ .+-.+.+++.+.++.|.+. +.++++++-+. T Consensus 432 ~~~~i~v~yis~L--a~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q 509 (555) T protein:vir:10 432 QGVDLNVEFVSML--AQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ 509 (555) T ss_pred cCceeEEEeccHH--HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH Confidence 1112444443444 3444333322 222222 3677888999988888665 33554443222 Q ss_pred HHHH--HHHHHHh-------------cCcccccc-----cccCCCC Q lcl|Aclame:pro 489 KKTQ--GIAQAEA-------------ADPFGAQM-----AAEQGIP 514 (527) Q Consensus 489 ~a~~--a~~~~aa-------------~d~~g~~~-----~~d~g~~ 514 (527) .+.+ +..++++ ++++..+. .+++|-- T Consensus 510 r~~~~q~~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:10 510 RADQQQAAQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhccCC Confidence 1111 1111111 11111110 1222222 No 112 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=99.24 E-value=3.6e-10 Score=72.35 Aligned_cols=463 Identities=12% Similarity=0.106 Sum_probs=238.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.-.+. .+...+.|..+-+ .=+.=+.+++.|.+|..-.-..+..--.+..+.....++.+-|.+.+++.++. T Consensus 1 M~~~~~----~~~l~~r~~~l~~----~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~ 72 (555) T protein:vir:10 1 MAEQTE----RKLLLSRWGQLRT----ERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAG 72 (555) T ss_pred CCCccc----HHHHHHHHHHHHH----HhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHH Confidence 543331 2223333332110 00112678888888875542222111111111122457888999999998888 Q ss_pred hccC-----cccc-ccCcc------hhHHH-------HHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 81 LGQG-----LKWE-FSKKD------AKVDD-------AIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 81 Lg~~-----~~~~-i~~~~------~~v~~-------~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) |+.+ .+|| ++..+ .+|++ .+..-+.+.|+...+-++=+..++-|-|++++-.|+.+ . T Consensus 73 L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~----~ 148 (555) T protein:vir:10 73 MMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDA----V 148 (555) T ss_pred HHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCc----e Confidence 8532 3554 22221 22433 34456678899999999999999999999999888765 3 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEE---------Eeee---CCCCccceee---eeeeeee--eeeecCCccccCC Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLV---------DEYP---HPDSEKKNEK---CARVQKY--MKTLDDDGKPVPG 204 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a---------~~~~---~pd~~~~~~k---~~rr~~~--~~~~~~~g~p~~~ 204 (527) +.++.+..+.|+-..|+. |+|-.|+-- .+|. .|++....++ ...+.+. ..++..++ T Consensus 149 ~rf~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~----- 221 (555) T protein:vir:10 149 VYHHSLTAGEYAIAADNQ--GRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADR----- 221 (555) T ss_pred EEEEEeecceeEEeeCCC--CCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCc----- Confidence 567788899888877665 567666521 1232 1211100000 0000000 00011111 Q ss_pred ccceeeecccccccccccccccccccceeeeccCcc---ccccc-ccccccceEeeCCCCCCCCccCCccccchHHHHHH Q lcl|Aclame:pro 205 GAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE---EEPLP-EQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIAS 280 (527) Q Consensus 205 g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~---e~~l~-~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~de 280 (527) .+++.+.++ -++..+.-.+. ...|. -++...|++.++=...++++||+|=.++.++-+.. T Consensus 222 ----------~~~~~~~~~------~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~ 285 (555) T protein:vir:10 222 ----------DPSKRDDRN------MAWKSVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQ 285 (555) T ss_pred ----------CcCCCCccc------cceEEEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHH Confidence 111111111 01111110000 01111 23567899999988889999999999999999999 Q ss_pred HHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecC----CCCceEEeccccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHG----QNNKIYRVNGVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 281 Ln~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~----~~~k~~~ld~~~~la~~~~~~d~L~~~l 356 (527) ||+.--..-..++..-+|.+.. + ++|...++...||.+.... +++-.-.+...+++....+-++.+..+| T Consensus 286 L~~l~~~~l~~~~~~~~pp~~v---~---~~~~~~~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI 359 (555) T protein:vir:10 286 LQHEQLRKAQAIDYKSNPPLQL---P---VSAKNQDISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERI 359 (555) T ss_pred HHHHHHHHHHHHHHHhcCceee---c---cccccccceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHH Confidence 9997777778888887775543 1 1222234567788774432 2233334455558888888888888888 Q ss_pred HHhhcCchhh-cccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-------- Q lcl|Aclame:pro 357 QQTKGIPDIA-VGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-------- 427 (527) Q Consensus 357 ~~vs~tP~va-~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-------- 427 (527) ...==..-.. +...|.... .|=++ ..+.++|...++.++.++..+++.-++.+.-.++...+. T Consensus 360 ~~af~~dlf~~l~~~~~~~~---TAtEV-----~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l 431 (555) T protein:vir:10 360 KASFYADLFLMLANGTNPQM---TATEV-----AERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEM 431 (555) T ss_pred HHHhhcchhhhccCCCCCcc---cHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh Confidence 7644322111 111132221 13343 356778888888888887777665444332222211110 Q ss_pred cceeEEEEeCCCCCCCHHHHHHHHH----------HHHhcC-----CccHHHHHHHHHHhcCCCC----chHHHHHHHHH Q lcl|Aclame:pro 428 KKLTVTITFRDPKPVNNEKRFAQLL----------ELWEAG-----LIPAKKLTEELSKIMGFEL----TEEDFRQATED 488 (527) Q Consensus 428 ~~~~v~v~w~d~lP~D~~~~i~~~v----------~l~~aG-----lls~~ta~~~L~~~g~~~~----~e~~~~~~~e~ 488 (527) ....+.|.+-.+| .+.+...++. .+-+.+ .+-.+.+++.+.++.|.+. +.++++++-+. T Consensus 432 ~~~~i~v~yis~L--a~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q 509 (555) T protein:vir:10 432 QGVDLNVEFVSML--AQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ 509 (555) T ss_pred cCceeEEEeccHH--HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH Confidence 1112444443444 3444333322 222222 3677888999988888665 33554443222 Q ss_pred HHHH--HHHHHHh-------------cCcccccc-----cccCCCC Q lcl|Aclame:pro 489 KKTQ--GIAQAEA-------------ADPFGAQM-----AAEQGIP 514 (527) Q Consensus 489 ~a~~--a~~~~aa-------------~d~~g~~~-----~~d~g~~ 514 (527) .+.+ +..++++ ++++..+. .+++|-- T Consensus 510 r~~~~q~~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:10 510 RADQQQAAQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhccCC Confidence 1111 1111111 11111110 1222222 No 113 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=99.24 E-value=3.6e-10 Score=72.35 Aligned_cols=463 Identities=12% Similarity=0.106 Sum_probs=238.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.-.+. .+...+.|..+-+ .=+.=+.+++.|.+|..-.-..+..--.+..+.....++.+-|.+.+++.++. T Consensus 1 M~~~~~----~~~l~~r~~~l~~----~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~dst~~~a~~~LAa~ 72 (555) T protein:vir:98 1 MAEQTE----RKLLLSRWGQLRT----ERESWMSHWKEISDYLLPRAGRFFVQDRNRGEKRHNNILDNTGTRALRVLAAG 72 (555) T ss_pred CCCccc----HHHHHHHHHHHHH----HhhHHHHHHHHHHHHhCcccccccCCCCCcchhcccccccccHHHHHHHHHHH Confidence 543331 2223333332110 00112678888888875542222111111111122457888999999998888 Q ss_pred hccC-----cccc-ccCcc------hhHHH-------HHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 81 LGQG-----LKWE-FSKKD------AKVDD-------AIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 81 Lg~~-----~~~~-i~~~~------~~v~~-------~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) |+.+ .+|| ++..+ .+|++ .+..-+.+.|+...+-++=+..++-|-|++++-.|+.+ . T Consensus 73 L~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~----~ 148 (555) T protein:vir:98 73 MMAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDA----V 148 (555) T ss_pred HHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCc----e Confidence 8532 3554 22221 22433 34456678899999999999999999999999888765 3 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEE---------Eeee---CCCCccceee---eeeeeee--eeeecCCccccCC Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLV---------DEYP---HPDSEKKNEK---CARVQKY--MKTLDDDGKPVPG 204 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a---------~~~~---~pd~~~~~~k---~~rr~~~--~~~~~~~g~p~~~ 204 (527) +.++.+..+.|+-..|+. |+|-.|+-- .+|. .|++....++ ...+.+. ..++..++ T Consensus 149 ~rf~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~pr~~~----- 221 (555) T protein:vir:98 149 VYHHSLTAGEYAIAADNQ--GRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIEPRADR----- 221 (555) T ss_pred EEEEEeecceeEEeeCCC--CCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEeeccCc----- Confidence 567788899888877665 567666521 1232 1211100000 0000000 00011111 Q ss_pred ccceeeecccccccccccccccccccceeeeccCcc---ccccc-ccccccceEeeCCCCCCCCccCCccccchHHHHHH Q lcl|Aclame:pro 205 GAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTE---EEPLP-EQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIAS 280 (527) Q Consensus 205 g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~---e~~l~-~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~de 280 (527) .+++.+.++ -++..+.-.+. ...|. -++...|++.++=...++++||+|=.++.++-+.. T Consensus 222 ----------~~~~~~~~~------~p~~s~~~~~~~d~~~vl~esgy~e~P~i~~Rw~~~~ge~YGrgp~~~~lgD~k~ 285 (555) T protein:vir:98 222 ----------DPSKRDDRN------MAWKSVYFEPGADETRTLRESGYRSFRALCPRWALVGGDIYGNSPAMEALGDVRQ 285 (555) T ss_pred ----------CcCCCCccc------cceEEEEEEeccCCccccccCCcccCCceeeeeeecCCCccccchHHHHHHHHHH Confidence 111111111 01111110000 01111 23567899999988889999999999999999999 Q ss_pred HHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecC----CCCceEEeccccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHG----QNNKIYRVNGVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 281 Ln~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~----~~~k~~~ld~~~~la~~~~~~d~L~~~l 356 (527) ||+.--..-..++..-+|.+.. + ++|...++...||.+.... +++-.-.+...+++....+-++.+..+| T Consensus 286 L~~l~~~~l~~~~~~~~pp~~v---~---~~~~~~~~~~~pgg~~~v~~g~~~d~~~~~~~~~~d~~~~~~~i~~~~~rI 359 (555) T protein:vir:98 286 LQHEQLRKAQAIDYKSNPPLQL---P---VSAKNQDISTVPGGLSYVDAAAPNGGIRTAFEVNLDLSHLLADIVDVRERI 359 (555) T ss_pred HHHHHHHHHHHHHHHhcCceee---c---cccccccceeccccccccccCCCCcceecccccccchHHHHHHHHHHHHHH Confidence 9997777778888887775543 1 1222234567788774432 2233334455558888888888888888 Q ss_pred HHhhcCchhh-cccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-------- Q lcl|Aclame:pro 357 QQTKGIPDIA-VGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-------- 427 (527) Q Consensus 357 ~~vs~tP~va-~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-------- 427 (527) ...==..-.. +...|.... .|=++ ..+.++|...++.++.++..+++.-++.+.-.++...+. T Consensus 360 ~~af~~dlf~~l~~~~~~~~---TAtEV-----~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~P~~l 431 (555) T protein:vir:98 360 KASFYADLFLMLANGTNPQM---TATEV-----AERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVEANILPPPPQEM 431 (555) T ss_pred HHHhhcchhhhccCCCCCcc---cHHHH-----HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh Confidence 7644322111 111132221 13343 356778888888888887777665444332222211110 Q ss_pred cceeEEEEeCCCCCCCHHHHHHHHH----------HHHhcC-----CccHHHHHHHHHHhcCCCC----chHHHHHHHHH Q lcl|Aclame:pro 428 KKLTVTITFRDPKPVNNEKRFAQLL----------ELWEAG-----LIPAKKLTEELSKIMGFEL----TEEDFRQATED 488 (527) Q Consensus 428 ~~~~v~v~w~d~lP~D~~~~i~~~v----------~l~~aG-----lls~~ta~~~L~~~g~~~~----~e~~~~~~~e~ 488 (527) ....+.|.+-.+| .+.+...++. .+-+.+ .+-.+.+++.+.++.|.+. +.++++++-+. T Consensus 432 ~~~~i~v~yis~L--a~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~q 509 (555) T protein:vir:98 432 QGVDLNVEFVSML--AQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQ 509 (555) T ss_pred cCceeEEEeccHH--HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH Confidence 1112444443444 3444333322 222222 3677888999988888665 33554443222 Q ss_pred HHHH--HHHHHHh-------------cCcccccc-----cccCCCC Q lcl|Aclame:pro 489 KKTQ--GIAQAEA-------------ADPFGAQM-----AAEQGIP 514 (527) Q Consensus 489 ~a~~--a~~~~aa-------------~d~~g~~~-----~~d~g~~ 514 (527) .+.+ +..++++ ++++..+. .+++|-- T Consensus 510 r~~~~q~~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:98 510 RADQQQAAQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhccCC Confidence 1111 1111111 11111110 1222222 No 114 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.23 E-value=1.5e-10 Score=74.47 Aligned_cols=433 Identities=11% Similarity=0.087 Sum_probs=194.0 Q ss_pred CCCChhhhhhhhHHh-------hcccCCCCCCChHHH--HHHHHHHHHHHHhcCChh---heEeeecCCcccccccccCC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLR-------AGEANFPNAVTDFDK--ARLASYRLYEDMYLTNTS---DYQVILRGGDEGDQRPIYVP 68 (527) Q Consensus 1 m~~~~~qy~~~~~~~-------~~~~~~~~~v~~~d~--~Rl~aY~~~~~~y~~~~~---~~~~i~~g~d~~~~~~~~~p 68 (527) .....++|.....-+ .|+.+ +. ..++- .-.+-.+.+.+||..+.- +|-++. .+-+ T Consensus 55 ~~~~~~~~~~~~~~~a~ds~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~alY----------~~~~ 121 (765) T protein:vir:96 55 VIRSVKDFLEPGLSVAMDSAYGDGPTP--AA-KAAAGGQNPYVVPTMLQDWYNSQGFIGYQACAII----------SQHW 121 (765) T ss_pred CCCCCCcccCcccceeccccccccccc--hH-HHhhhccCccchhhHHHhhhcccCCccHHHHHHH----------HhCc Confidence 334444444222111 11110 00 00000 001112223333322210 000011 1122 Q ss_pred chhHHHHhhhhhhccCccccccCcchhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEE--EEEecCCCCCccce Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKKDAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVL--LLIGDDEKDEGSRL 142 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~--~i~~d~~k~~~~r~ 142 (527) -++|+||.+..-+ +-..++|++.+.+. .++|+.-+++=++..++..+-||+-+-|.++. .|..++.+.-. T Consensus 122 l~rkiVd~pAeDa-~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l~--- 197 (765) T protein:vir:96 122 LVDKACSMSGEDA-ARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYYE--- 197 (765) T ss_pred hhhhhhhcchHHh-hcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchhh--- Confidence 3789999987776 66677887765443 33444444444577889999999999999854 33333322110 Q ss_pred EEEEEccceEEEEecCCCCCceEEEEEEEe-eeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccc Q lcl|Aclame:pro 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDE-YPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) Q Consensus 143 ~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~-~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~ 221 (527) ..++|..+= .+.+.+++.... |..|... . +...+ | ...-+++-..|.+.+ T Consensus 198 --~PL~~~~I~-------kg~~kgl~vldp~~~~~~~v----------~---e~~~D--p--~sp~fg~P~~y~i~g--- 248 (765) T protein:vir:96 198 --KPFNPDGIA-------PGSYKGISQIDPYWAMPQLT----------A---ESTAD--P--SAEHFYEPDFWIISG--- 248 (765) T ss_pred --ccccccccc-------cceeeEEEEechhhcccccc----------h---hcccc--c--cccccCcceeeeecC--- Confidence 112222211 012344432211 2222100 0 00000 0 001111111222211 Q ss_pred cccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE Q lcl|Aclame:pro 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA 301 (527) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~ 301 (527) ..++.-++.... -. .+|.+ ..+....||.|-|+.+..-|....++.--..-.+......++. T Consensus 249 ---~~IH~SRli~~~----g~-------~lpd~----lk~~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k 310 (765) T protein:vir:96 249 ---KKYHRSHLVVVR----GP-------QPPDI----LKPTYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIH 310 (765) T ss_pred ---ceeccceEEEec----CC-------Cchhh----hccccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceee Confidence 122322221110 00 01111 1245678999999987777777766663333333344455666 Q ss_pred eccCCCc-CCCCcc---c---ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCch-hhccccccc Q lcl|Aclame:pro 302 TDSAPPR-DSRGNM---V---PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD-IAVGVVDAA 373 (527) Q Consensus 302 ~~g~~~~-d~~G~~---~---p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~-va~G~~d~s 373 (527) +.+.... +.++-. . -..-.-|++ -++.+.+|..++. +++++.+-++..+..|+..+++|. +-||+.-.+ T Consensus 311 ~~~~~~l~~~~~l~~r~~~~~~~r~n~g~~-~id~ee~~e~~s~--~lsgl~d~l~~~~~~iAaas~IP~t~LfGqsp~G 387 (765) T protein:vir:96 311 VDVEKAIANEDAFNARLAFWIANRDNHGVK-VIGIDETMEQFDT--NLSDFDSVIMNQYQLVAAIAKTPATKLLGTSPKG 387 (765) T ss_pred echHhhhccHHHHHHHHHHHHHhcCCceeE-EecCCcceeEEec--ccCCHHHHHHHHHHHHHhhhCCCeeeeccCCccc Confidence 6554322 111100 0 011123444 4888899999986 788999999999999999999999 777843222 Q ss_pred ccccHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH---- Q lcl|Aclame:pro 374 VAESGIALDLKLSAILSSCAEQEL-ELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF---- 448 (527) Q Consensus 374 ~a~SG~ALql~~~PLlakv~~krl-~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i---- 448 (527) ...||-.=...|- ..++++|- .+.-.++++.+.+ + ....+ + ...+|.|++...-|.++.+ T Consensus 388 lnATGe~D~~nYy---D~I~s~Qe~~l~p~le~L~~li----~-~s~~i-----~--~d~~i~FnpL~~~sekEkAei~~ 452 (765) T protein:vir:96 388 FNATGEHETISYH---EELESIQEHIFDPLLERHYLLL----A-KSESI-----D--VQLEIVWNPVDSTTSQQQAELNN 452 (765) T ss_pred ccCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH----H-HhcCC-----C--CcceEEeCCCCCCCHHHHHHHHH Confidence 2234443333344 44555542 2334454443222 2 11111 1 1367889999866655444 Q ss_pred ---HHHHHHHhcCCccHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHHHHHHHhcCccccccc-----ccCCCCccc Q lcl|Aclame:pro 449 ---AQLLELWEAGLIPAKKLTEELSKIMGFEL---TEEDFRQATEDKKTQGIAQAEAADPFGAQMA-----AEQGIPDEE 517 (527) Q Consensus 449 ---~~~v~l~~aGlls~~ta~~~L~~~g~~~~---~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~-----~d~g~~d~~ 517 (527) +...+++++|+|+.+++..+|..-+-.++ ++++.... ...++-+.... +++..+.++ T Consensus 453 k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~------------~~~~pe~~~~~~~~~~~~~~~~~e~ 520 (765) T protein:vir:96 453 KKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETE------------PGMSPENLAELEKAGAQSAKAKGEA 520 (765) T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccc------------cCCCccccccccCCCcccccccCcc Confidence 44678999999999999999854432222 22221110 01111110000 000011100 Q ss_pred ccc------cCCCCCC Q lcl|Aclame:pro 518 DDQ------ALNGQPL 527 (527) Q Consensus 518 ~~~------~~~~~~~ 527 (527) .-+ +++.+|- T Consensus 521 ~~~~a~p~~~eg~~~~ 536 (765) T protein:vir:96 521 ERAEAQAGAVEGAGDP 536 (765) T ss_pred ccccCCCCccCCCCcc Confidence 000 1111111 No 115 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=99.20 E-value=3.6e-10 Score=72.35 Aligned_cols=489 Identities=8% Similarity=-0.032 Sum_probs=215.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhc--CChhh--eEeeec-CCcccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYL--TNTSD--YQVILR-GGDEGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~--~~~~~--~~~i~~-g~d~~~~~~~~~p~~~k~v~ 75 (527) |.=++++ -....+..+.- ........|- ..+.=.+||+ |++|. .+.+|+ .+-+-.+.++-++-.+.+|+ T Consensus 1 m~~~~~~--~~~~~~~~~~~---~~~~~~~~r~-~~~~D~~f~~~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i~~~v~ 74 (708) T protein:vir:10 1 MAETLEK--KHERIMLRFDR---AYSPQKEVRE-KCIEATRFARVPGGQWEGATAAGTKLDEQFEKYPKFEINKVATELN 74 (708) T ss_pred CchhHHH--HHHHHHHHHHH---HHHhhHHHHH-HHHHHHHhhcCCCCCCCHHHHHHHHHhhhhcCCCceEEcchHHHHH Confidence 3333221 11111111111 0000001110 0111112564 76664 222221 11112345677788999999 Q ss_pred hhhhhhccCc-cc--cccCc--chhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecC------CCCCcc Q lcl|Aclame:pro 76 AKMRFLGQGL-KW--EFSKK--DAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDD------EKDEGS 140 (527) Q Consensus 76 ~~~~~Lg~~~-~~--~i~~~--~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~------~k~~~~ 140 (527) .++++--.+. +. .+..+ ++++ ...++.+.+.++.+...-.+-..+++-|=|+|.|.-|. .....+ T Consensus 75 ~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~~e~d~~~~~~~ 154 (708) T protein:vir:10 75 RIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDRQR 154 (708) T ss_pred HHHHHHHhCCcceEEEcCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhhcccceeeeeeccccccCCCCCccc Confidence 9999884333 11 22322 2332 44456677788899999999999999999999886542 222222 Q ss_pred ceEEEEEccc-eEE--EE---ecCCCCCceEEEEEEEeeeCCCCcc---------------------------ceeeeee Q lcl|Aclame:pro 141 RLSLHEVDPS-TYF--PY---EDPRYPGQVLGVYLVDEYPHPDSEK---------------------------KNEKCAR 187 (527) Q Consensus 141 r~~i~~vdP~-~~f--p~---~d~d~~~~v~~vh~a~~~~~pd~~~---------------------------~~~k~~r 187 (527) -++....+|. .+| |. .|..+.+.+.+.. |-+++.-+ ....+.+ T Consensus 155 i~i~~~~~p~~~v~~Dp~a~~~D~sDar~~~~~~----~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~~d~v~v~ey 230 (708) T protein:vir:10 155 IAIEPIYDPSRSVWFDPDAKKYDKSDALWAFCMY----SLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFGADVIYIAKY 230 (708) T ss_pred cceEEeecchhhcccCccccccChhhhhhhhhcc----CCCHHHHHHhCCCCcccccccccCCCccccccCCCceEEEEe Confidence 3334455563 233 32 2333223333222 22222110 0111111 Q ss_pred ---eeeeeeee-cCCccccCCccceee-eccc-------cccccccccccccccccee----eeccCccc-ccccccccc Q lcl|Aclame:pro 188 ---VQKYMKTL-DDDGKPVPGGAIKYT-EELY-------EPGKWDDRPESPLEPDDIK----KLSTLTEE-EPLPEQITT 250 (527) Q Consensus 188 ---r~~~~~~~-~~~g~p~~~g~i~~~-~~~~-------~~g~wd~~~~~~~~~~~~~----~~~~~~~e-~~l~~pi~~ 250 (527) +...+... ..+ +.+|.+..- .... ...++.... .+...+++ ..+....+ .+-|-|.++ T Consensus 231 ~~r~~~~~~~~~~~~---~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~--~r~~~r~~v~~~~~~g~~~le~~~~~p~~~ 305 (708) T protein:vir:10 231 YEVRKESVDVISYRH---PITGEIATYDSDQVEDIEDELAIAGFHEVA--RRSVKRRRVYVSVVDGDGFLEKPRRIPGEH 305 (708) T ss_pred eeEEEEEEEEEEEec---CCCCceeeecchhhhhHHHHHHhcccchhh--eeeeeeEEEEEEeecchhhhccCCCCCCCc Confidence 00000000 000 112222110 0000 011111000 00011111 11222222 557788999 Q ss_pred cceEeeCCCC--CCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe-----ccCCCc--CCCCc---c---c Q lcl|Aclame:pro 251 LPVFHFRGHP--IMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT-----DSAPPR--DSRGN---M---V 315 (527) Q Consensus 251 iPVV~~pN~~--~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~-----~g~~~~--d~~G~---~---~ 315 (527) +|||+|-... .++...+..-+.+++..++.+|++.|.+..++...+..++.. +|.... +.+.. . . T Consensus 306 fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 385 (708) T protein:vir:10 306 IPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLR 385 (708) T ss_pred eeeEEEeeeeeccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHHHHHhhccccchhhhccc Confidence 9999986643 256665667789999999999999999999998887765332 221110 01110 0 1 Q ss_pred ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHH-hccHHHHHHH Q lcl|Aclame:pro 316 PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLK-LSAILSSCAE 394 (527) Q Consensus 316 p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~-~~PLlakv~~ 394 (527) ++...+|.+...+ .++..+....-.+++.+.++.....|.+++++-...+|. .|+ .||+|++.. .+-..+...- T Consensus 386 ~~~~~~G~~~~~~--~~~~~~q~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~--~sn-~SG~aI~~rq~qg~~~l~~~ 460 (708) T protein:vir:10 386 EVRDKSGNIIAGA--TPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQM--PSN-IAQETVNNLMNRADMASFIY 460 (708) T ss_pred ccccccccccccc--CCccccCCccchHHHHHHHHHHHHHHHHHhCcChhHccC--ccc-hHHHHHHHHHHHHHHHHHHH Confidence 1233455554322 123333322234457788888888999999999999993 445 599999843 2222211111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--hhhccccc-c-c---------------------------ceeEEEEeCCCCCCC Q lcl|Aclame:pro 395 QELELKSVLKQFFYNLVTQWLPAY--EGVGIDDA-D-K---------------------------KLTVTITFRDPKPVN 443 (527) Q Consensus 395 krl~~~~~~~q~~~~li~~~L~~~--e~v~~~~~-~-~---------------------------~~~v~v~w~d~lP~D 443 (527) .. -+.....++.+.++.++-.-| +++..+.. + . .+-|.|.=++..|+- T Consensus 461 ~D-nl~~~~~~~g~~lL~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~~~p~~~s~ 539 (708) T protein:vir:10 461 LD-NMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTAR 539 (708) T ss_pred HH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEecccCchhH Confidence 00 112222233333333332222 11111111 0 0 112334445667777 Q ss_pred HHHHHHHHHHHHhcCCccHH---HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccc Q lcl|Aclame:pro 444 NEKRFAQLLELWEAGLIPAK---KLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQ 520 (527) Q Consensus 444 ~~~~i~~~v~l~~aGlls~~---ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~ 520 (527) +++-++.++.+.++...... ..+-.|.+.+.. | ..+++.|++.+.. . ..+.+.|..+..+ T Consensus 540 r~~~~~~l~qll~~~~p~~~~~~~~~~~~l~~~D~-p---~~~ei~erir~~~----~---------~~~~~~~~~~ee~ 602 (708) T protein:vir:10 540 RDATVSVLTNVLSSMLPTDPMRPAIQGIILDNIDG-E---GLDDFKEYNRNQL----L---------ISGIAKPRNEKEQ 602 (708) T ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHhcCC-c---ChHHHHHHHHHhh----c---------ccccccccchhhH Confidence 77888888888777664321 122223344421 1 1223333333210 0 0000111111111 Q ss_pred cCCCCCC Q lcl|Aclame:pro 521 ALNGQPL 527 (527) Q Consensus 521 ~~~~~~~ 527 (527) +...+.. T Consensus 603 q~~~~~q 609 (708) T protein:vir:10 603 QIVQQAQ 609 (708) T ss_pred HHHHHHH Confidence 0000000 No 116 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=99.16 E-value=7.2e-10 Score=70.70 Aligned_cols=468 Identities=11% Similarity=0.022 Sum_probs=189.7 Q ss_pred CCCCh---------------------hhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc Q lcl|Aclame:pro 1 MGQDK---------------------RQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE 59 (527) Q Consensus 1 m~~~~---------------------~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~ 59 (527) |-.|. .+-+-+...+.-|- .+ .+.-|.+++. +.|||............|... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~grs~ 73 (763) T protein:vir:95 1 MEQNTDSMVPLPDPSQATKLTSWKNELSLQALKADLDAAK---PS---HTAMMIKVKE-WNDLMRIEGKAKPPKVKGRSQ 73 (763) T ss_pred CCcCccCcCCCccccchhcCCCCCChHHHHHHHHHHHhhh---cc---hhHHHHHHHH-HHHhhhccccCcccccCCCcc Confidence 22221 12222223332111 12 2233666654 455555554444555567665 Q ss_pred cccccccCCchhHHHHhhhhhhcc---Cc----cccccCcc----hhHHHHHHHH-HHhcCch-hhHHHHhHhhhhcccE Q lcl|Aclame:pro 60 GDQRPIYVPNGEKLIEAKMRFLGQ---GL----KWEFSKKD----AKVDDAIRVL-FDRENWE-QKFESLKRWTEIRGDY 126 (527) Q Consensus 60 ~~~~~~~~p~~~k~v~~~~~~Lg~---~~----~~~i~~~~----~~v~~~lr~w-~~~e~l~-~k~~~~~r~a~~~GDa 126 (527) . -.+...+.||..+..|.- +. .+.+..++ |+....+--| +++.+=. .-+...-|.||+-|-| T Consensus 74 v-----v~~~v~~~ve~~~~~l~~~f~~~~~~~~~~P~~~~D~~~A~q~t~~~n~~~~~~~~~~~~~~~~~~~~l~~~~g 148 (763) T protein:vir:95 74 V-----QPKLVRRQAEWRYSALTEPFLGSNKLFKVTPVTWEDVQGARQNELVLNYQFRTKLNRVSFIDNYVRSVVDDGTG 148 (763) T ss_pred c-----cCHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCcchHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHhhcCcc Confidence 3 344466788887777743 11 22233332 2233323233 4444433 4477899999999999 Q ss_pred EEEEEecCCCC--------------------------------------------------------------------- Q lcl|Aclame:pro 127 VLLLIGDDEKD--------------------------------------------------------------------- 137 (527) Q Consensus 127 v~~i~~d~~k~--------------------------------------------------------------------- 137 (527) |.|+.|+-+.. T Consensus 149 v~k~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (763) T protein:vir:95 149 IVRVGWNREIRKEKQEVPVFSLFPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYAVQTGTTTT 228 (763) T ss_pred eEEEeeeeeeeeeeeeehhhhhccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceeeecccceeE Confidence 99999971110 Q ss_pred -----CccceEEEEEccceEEEEe----cCCCCCceEEEEEEEeeeCCCC-------------------ccceeeeeeee Q lcl|Aclame:pro 138 -----EGSRLSLHEVDPSTYFPYE----DPRYPGQVLGVYLVDEYPHPDS-------------------EKKNEKCARVQ 189 (527) Q Consensus 138 -----~~~r~~i~~vdP~~~fp~~----d~d~~~~v~~vh~a~~~~~pd~-------------------~~~~~k~~rr~ 189 (527) .-.||+|+.|+|..+|.-. |.++...+ +|-.+ -+..+ ........+.. T Consensus 229 ~~~~~~k~~p~ie~V~p~d~~iDp~a~sD~~Da~~~--~~~~~--~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 304 (763) T protein:vir:95 229 EVEVPLANHPTVEMLNPENIIIDPSCQGDINKAMFA--IVSFE--TCKADLLKEKDRYHNLNKIDWQSSAPVNEPDHATT 304 (763) T ss_pred EEEEEecCceEEEeecHHHheecCCCCCchhhCceE--eeEEe--ccHHHHHhccCCccccchhcchhcccccccccccc Confidence 0015566667776655421 11111111 11110 00000 00000000000 Q ss_pred eeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCc-ccccccc--cccccceEeeCCCCCCCCcc Q lcl|Aclame:pro 190 KYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLT-EEEPLPE--QITTLPVFHFRGHPIMNAMF 266 (527) Q Consensus 190 ~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~-~e~~l~~--pi~~iPVV~~pN~~~~~~~w 266 (527) ++ ...++.-...-.|...++ |.. ++-...... .-+++...+. .+...++ +.+.+|+|+++-.+.+.+.| T Consensus 305 ~~---~~~~~~d~~~~~V~v~E~-y~~--~d~~gdg~~--~~~~v~~~g~~iL~~~~~p~~~~~~PFv~~~~~p~~~~~~ 376 (763) T protein:vir:95 305 TP---QEFQISDPMRKRVVAYEY-WGF--WDIEGNGVL--EPIVATWIGSTLIRLEKNPYPDGKLPFVLIPYMPVKRDMY 376 (763) T ss_pred ch---hhccCCCcccceEEEEEe-eee--eccCCccee--EEEEEEEEcCeeeecccccccCCCcCEEEecceeecCccc Confidence 00 000110011112222222 211 111111111 1122222333 3344444 45779999999998899999 Q ss_pred CCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe-ccCCCcCCCCcccceecCCCeeEecCCCCceE----EeccccC Q lcl|Aclame:pro 267 GRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT-DSAPPRDSRGNMVPWTISPLGMVEHGQNNKIY----RVNGVAS 341 (527) Q Consensus 267 G~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~-~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~----~ld~~~~ 341 (527) |.|-+..+.++++.+|+.++.+..++..+++|.+.. .|+ ++.+.. +.-.||.++....++... ... .+. T Consensus 377 G~gi~~~~~d~Qr~~N~~~~~~~d~l~~~~~~~~~v~~ga--v~~~d~---~~~~pg~v~~v~~g~~~~~~~~~~~-~p~ 450 (763) T protein:vir:95 377 GEPDAELLGDNQAVLGAVMRGMIDLLGRSANGQRGMPKGM--LDALNS---RRYREGEDYEYNPTQNPAQMIIEHK-FPE 450 (763) T ss_pred CCchHHHhhHHHHHHHHHHHHHHHHHHhhcCCcEEeeccc--ccchhh---hcccCCceEEeeCCCChhhhccccc-CCC Confidence 999999999999999999999999999999996544 333 222211 223566666654433321 111 122 Q ss_pred hH-HHHHHHHHHHHHHHHhhcCchhhccccccc--ccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 342 LE-PSQTHMNKAEEAMQQTKGIPDIAVGVVDAA--VAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAY 418 (527) Q Consensus 342 la-~~~~~~d~L~~~l~~vs~tP~va~G~~d~s--~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~ 418 (527) +. .+..-+..+...+.+.++++....|-...+ ...||++..+.-+- .+....--.|..++..+++.+ ..++..| T Consensus 451 ~~~~~~~~l~~~~~~~e~~TGv~~~~~G~~~~~~~~tat~v~~l~qa~~--~~~~~~~r~~~~~~k~l~~~~-l~Li~q~ 527 (763) T protein:vir:95 451 LPQSALTMATLQNQEAESLTGVKAFAGGVTGESYGDVAAGIRGVLDAAS--KREMAILRRLAKGMSEIGNKI-IAMNAVF 527 (763) T ss_pred CcchHHHHHHHHHHHHHHhhCcchhhcCcCcccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHHHHhh Confidence 22 233333444445667888888877733211 11233333211111 000000001223344444332 3334443 Q ss_pred -h--hhcccccccc-----------eeEEEEeCCCCCCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHH Q lcl|Aclame:pro 419 -E--GVGIDDADKK-----------LTVTITFRDPKPVNN-EKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFR 483 (527) Q Consensus 419 -e--~v~~~~~~~~-----------~~v~v~w~d~lP~D~-~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~ 483 (527) . .+..+.+... .-|.|.-+. .+. ++.+++... +|... +...+-.-.. T Consensus 528 ~d~~rviRI~g~e~v~v~~~~~~~~~DV~V~~~~---as~~~q~~~~l~~--------------ll~~l-~~~~~~~~~~ 589 (763) T protein:vir:95 528 LAEHEVVRITNEEFVTIKREDLKGNFDLEVDIST---AEVDNQKSQDLGF--------------MLQTI-GPNVDQQITL 589 (763) T ss_pred CCCCcEEEEeCCccccccHHHhcCCcceEEeccc---chHHHHHHHHHHH--------------HHHHh-ccccChHHHH Confidence 1 1111111111 111222111 111 111111111 11111 1112222222 Q ss_pred HHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 484 QATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 484 ~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) .+..++..-.... ......- .. ..-||.. +....++ T Consensus 590 ~il~~~~d~~~~~-~~~~~lr--~~--q~~~d~~---~q~qaql 625 (763) T protein:vir:95 590 NILAEIADLKRMP-KLAHDLR--TW--QPQPDPV---QEQLKQL 625 (763) T ss_pred HHHHHHHhhhchh-hhHHHHH--hc--CCCccch---hhhHHHH Confidence 2222221100000 0000000 00 0001110 0000111 No 117 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.10 E-value=7.5e-10 Score=70.60 Aligned_cols=430 Identities=10% Similarity=0.051 Sum_probs=189.7 Q ss_pred CCCChhhhhhhhH-H-hhcccCCCCCCChHHHHH-------------------HHHHHHHHHHhcCChhheEeeecCCcc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQ-L-RAGEANFPNAVTDFDKAR-------------------LASYRLYEDMYLTNTSDYQVILRGGDE 59 (527) Q Consensus 1 m~~~~~qy~~~~~-~-~~~~~~~~~~v~~~d~~R-------------------l~aY~~~~~~y~~~~~~~~~i~~g~d~ 59 (527) |.-..+.+..+.. | .+|.. |.+.....+| ...|.+|.. | T Consensus 84 ~~~a~~~~~~~~~~~~~Dgl~---n~~~~lG~~~~~s~y~~~~~~~~~~~~~~f~gyql~al-Y---------------- 143 (862) T protein:vir:99 84 MDSAVRSAIKAITGFAMDDGG---GAPVPIGAEGKQSSYAVPEALQDWYLSQGFIGHQACAL-I---------------- 143 (862) T ss_pred chhhcchhhhhhhhhhhhcch---hhhhhccccccccccccchhccccccccCcccHHHHHH-H---------------- Confidence 2211111111110 0 12222 2222221111 112333332 2 Q ss_pred cccccccCCchhHHHHhhhhhhccCccccccCcch------hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEE--EE Q lcl|Aclame:pro 60 GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDA------KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLL--LI 131 (527) Q Consensus 60 ~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~------~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~--i~ 131 (527) .+-+-++|+||+++.=+ .-..+.|++.++ +..+.|+.-+++=++..++..+-||+=+-|.++.. |. T Consensus 144 -----~~~~larkiVd~pAeDa-tR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~eair~~RLyGga~ililv~ 217 (862) T protein:vir:99 144 -----AQHWLVDKACSLAGEDA-IRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLIEFNRFKNVFGIRVAIFVVD 217 (862) T ss_pred -----HhCchhhhhhhhhhHHH-hhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEEec Confidence 11223789999987766 555666766432 23445555455556788999999988888988653 34 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEE-eeeCCCCccceeeeeeeeeeeeeecCCccccCCccceee Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVD-EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYT 210 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~-~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~ 210 (527) +++.+.-. +.++|..+ ..+.+.+++... .|..|.... +...+ | ...-++. T Consensus 218 ~~D~~~Ls-----qPLn~e~I-------~kG~lkgl~vlDp~w~~p~~v~-------------~~~~D--p--~sp~yGk 268 (862) T protein:vir:99 218 SEDPDYYE-----KPFNPDGI-------TPGSYRGISQIDPYWMMPMLTA-------------ESTAD--P--SSQFFYE 268 (862) T ss_pred CcCchhhh-----cCcCcccc-------cccceeEEEEechhhhcccccc-------------ccccc--c--cccccCC Confidence 44422110 11222110 001223332211 122111000 00000 0 0000000 Q ss_pred ecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 211 EELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDL 290 (527) Q Consensus 211 ~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~ 290 (527) -..|.+. ...++.-++.... + .++| .+ ..+...+||.|-|+-+..-+....+++.-..- T Consensus 269 P~~y~I~------g~~IH~SRliif~-g---~~vp-------d~----lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~ 327 (862) T protein:vir:99 269 PEFWIIS------GQKYHRSHLIIAR-G---PQPA-------DI----LKPTYIFGGIPLVQRIYERVYAAERTANEAPL 327 (862) T ss_pred ceeeeec------CeeeccceeEEec-C---CCch-------hh----hhccCCccCccHHHHHHHHHHHHHHHHHHHHH Confidence 1112111 1123333322211 0 1111 11 12346689999999876666665555544444 Q ss_pred HHHHhCCceEEeccCCCcCC-CCcc------cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 291 IMVFGGLGFYATDSAPPRDS-RGNM------VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 291 i~~~~g~P~~~~~g~~~~d~-~G~~------~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) ++......++.+.++..... ++-. .-++-.-| |.-++.+.+|..++. +++++.+-++..+..|+..+++| T Consensus 328 Ll~ka~l~v~ktd~l~~l~~ed~l~~r~~~~~~~rdN~G-i~liD~eEe~e~ls~--slSGL~dll~~~~q~IAaas~IP 404 (862) T protein:vir:99 328 LAMNKRTTAIHTDTAKAIANEDKFIQRLMFWVRYRDNHA-VKVLGTDETMEQFDT--SLADFDAVIMGQYQLVASIAKTP 404 (862) T ss_pred HHHHhccceeechhHhhhccHHHHHHHHHHHHhccCcce-eEEecCCCceeEEec--ccCChHHHHHHHHHHHHhhhCCC Confidence 44445566666666543221 1100 01111123 455888889999986 78888889999999999999999 Q ss_pred hh-hcccccccccccHHHHHHHhccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCC Q lcl|Aclame:pro 364 DI-AVGVVDAAVAESGIALDLKLSAILSSCAEQEL-ELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKP 441 (527) Q Consensus 364 ~v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl-~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP 441 (527) .+ -||..-.+-..||-.=...|- ..++++|- .+.-.++++. .++ +.+ ... +...+|.|.+... T Consensus 405 ~tiLfGqspaGlnATGE~D~~nYy---D~I~s~QE~~L~P~LerL~-~li---~~~----lg~----~~d~~ieFnpL~~ 469 (862) T protein:vir:99 405 ATKLLGTAPKGFNSTGEFETISYH---EELESIQEHVYMPFLQRHY-LIS---RLS----LGI----QHEIDVVMEPVAS 469 (862) T ss_pred ceeecccCcccccCchHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HHH---HHh----cCC----CCcceEEeCCCCC Confidence 97 688442232234543334454 44444442 2334444432 121 111 111 1236788999888 Q ss_pred CCHHHHHHH-------HHHHHhcCCccHHHHHHHHHHhcCCCC---chHHHHHHHHHHHHHHHHHHHhcCc--------c Q lcl|Aclame:pro 442 VNNEKRFAQ-------LLELWEAGLIPAKKLTEELSKIMGFEL---TEEDFRQATEDKKTQGIAQAEAADP--------F 503 (527) Q Consensus 442 ~D~~~~i~~-------~v~l~~aGlls~~ta~~~L~~~g~~~~---~e~~~~~~~e~~a~~a~~~~aa~d~--------~ 503 (527) .|..+.++. ..+++++|+|+.+++..+|..-+-..+ +.++.++. ........++...+ . T Consensus 470 ~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d---~~~~~e~~~~~e~~g~a~~~ap~ 546 (862) T protein:vir:99 470 MTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEET---PGASPENLAAYQKAGAAQETASA 546 (862) T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCccccccc---CCCCcccccccccCCcccccccc Confidence 887766543 568899999999999999864332122 22222210 00000000000000 0 Q ss_pred cc-cccccCCCCccccc---ccCCCCCC Q lcl|Aclame:pro 504 GA-QMAAEQGIPDEEDD---QALNGQPL 527 (527) Q Consensus 504 g~-~~~~d~g~~d~~~~---~~~~~~~~ 527 (527) .. .+++..+-.+...+ -.+++.|. T Consensus 547 de~~aga~~~~~e~d~~~~p~~~~~~~g 574 (862) T protein:vir:99 547 KETQAGAAVTTAEGDQPNVQMVPSMKPG 574 (862) T ss_pred cccccccCCccccCCcccccccCCCCCC Confidence 00 00000000000000 00111111 No 118 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=98.97 E-value=8.8e-09 Score=64.75 Aligned_cols=490 Identities=10% Similarity=-0.090 Sum_probs=211.8 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChh--heEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTS--DYQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~--~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) ||=+.+-..-+...+..+-+ ...+.|-. .+.=.+||.|++| +...+|+. +.+| -++-.+.+|++++ T Consensus 1 m~d~~~~~~~~~~~~~~~~~------~~~~~r~~-a~~d~~fy~G~Qw~~~~~~~l~~----q~rp-~~N~i~~~i~~v~ 68 (725) T protein:vir:92 1 MADNENRLESILSRFDADWT------ASDEARRE-AKNDLFFSRISQWDDWLSQYTTL----QYRG-QFDVVRPVVRKLV 68 (725) T ss_pred CCchHHHHHHHHHHHHHHHH------hhHHHHHH-HHHHHHhhcCCCCCHHHHHHHHh----cCCC-cccchHHHHHHHH Confidence 88887766666666654433 22333332 2345579999988 44444433 2344 3578888999988 Q ss_pred hhhccCc---ccccc-CcchhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCC-C--CCc-cceEEEE Q lcl|Aclame:pro 79 RFLGQGL---KWEFS-KKDAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDE-K--DEG-SRLSLHE 146 (527) Q Consensus 79 ~~Lg~~~---~~~i~-~~~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~-k--~~~-~r~~i~~ 146 (527) ++--.+. .+.+. ..++++ ...++.+.+.++.+.....+-..+++.|-|++.|.+|-. . ..+ .+|.+.. T Consensus 69 g~e~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~i~~~~ 148 (725) T protein:vir:92 69 SEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTSNNQVIRREP 148 (725) T ss_pred hhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhcCcceeeeeecccCCCCCCCceeeEEee Confidence 8863322 11222 223333 444466666777888888999999999999999876521 1 111 1222222 Q ss_pred E-cc-ceEEEE-----ecCCCCCceEEEEEEEeeeCCCC-----------------------c-------cceeeeee-e Q lcl|Aclame:pro 147 V-DP-STYFPY-----EDPRYPGQVLGVYLVDEYPHPDS-----------------------E-------KKNEKCAR-V 188 (527) Q Consensus 147 v-dP-~~~fp~-----~d~d~~~~v~~vh~a~~~~~pd~-----------------------~-------~~~~k~~r-r 188 (527) + +| ..+|.- .|..+...+.+.+ |-++|. . ....-|++ + T Consensus 149 i~~~~~~V~~Dp~a~~~D~sDar~~~~~~----~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv~e~~~ 224 (725) T protein:vir:92 149 IHSACSHVIWDSNSKLMDKSDSRHCTVIH----SMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEFYE 224 (725) T ss_pred ccCChhhcccCchhhccChhhHHHHHHHh----cCCHHHHHHHHhhcCcchhhhhhcccCCcccccccCCCeEEEEEEEE Confidence 1 23 223321 1111111222221 222221 0 00111110 0 Q ss_pred eeeeee-ecCCccccCCccceeeeccccc---------ccccccccccccccceeee-ccCcc-c-ccccccccccceEe Q lcl|Aclame:pro 189 QKYMKT-LDDDGKPVPGGAIKYTEELYEP---------GKWDDRPESPLEPDDIKKL-STLTE-E-EPLPEQITTLPVFH 255 (527) Q Consensus 189 ~~~~~~-~~~~g~p~~~g~i~~~~~~~~~---------g~wd~~~~~~~~~~~~~~~-~~~~~-e-~~l~~pi~~iPVV~ 255 (527) +..++. +...-. +.+|.+. +-.+..+ .+|.-....++..-.+... ..|.+ + ++-|.|-+++|+|. T Consensus 225 r~~~~~~~~~~~d-~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~~P~vP 302 (725) T protein:vir:92 225 VVEKKETAFIYQD-PVTGEPV-SYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVP 302 (725) T ss_pred EEEEeeeEEeecC-CCCCcee-ecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhcCCCCCCCCceeeEE Confidence 000000 000000 1112211 0000000 0000000000000011111 12322 2 44567778899998 Q ss_pred eCCC--CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE-ecc-CCCcC-----CCCcc----cceecCCC Q lcl|Aclame:pro 256 FRGH--PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA-TDS-APPRD-----SRGNM----VPWTISPL 322 (527) Q Consensus 256 ~pN~--~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~-~~g-~~~~d-----~~G~~----~p~~v~pg 322 (527) |-.. ...+...+.+-+-+++..++.+|+++|.+..++..++.-... ..+ ..... +++.+ .+..+.+| T Consensus 303 ~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 382 (725) T protein:vir:92 303 VFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENNG 382 (725) T ss_pred EEeeeeccCCcccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHhccCccceeeccccccccc Confidence 6544 346777777889999999999999999999999887665422 222 11000 01110 11222333 Q ss_pred eeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHh-ccHHHH---HHHHHHH Q lcl|Aclame:pro 323 GMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKL-SAILSS---CAEQELE 398 (527) Q Consensus 323 ~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~-~PLlak---v~~krl~ 398 (527) .+ ..+++.......-.+++.+-++.....|..++++-...+|. .+++.||+|+...- +-+.+. ....+.. T Consensus 383 ~~----~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~--~~n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~ 456 (725) T protein:vir:92 383 EM----PTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAV--NGGQVAYDTVNQLNMRADLETYVFQDNLATA 456 (725) T ss_pred cc----cccCCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhcc--CchhhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 32 12233333432233478888888999999999999999995 45778999998443 222121 1112222 Q ss_pred HHHHHHHHHHHHHHHHHhhh--hhhccccc-c-c--------------------------ceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 399 LKSVLKQFFYNLVTQWLPAY--EGVGIDDA-D-K--------------------------KLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 399 ~~~~~~q~~~~li~~~L~~~--e~v~~~~~-~-~--------------------------~~~v~v~w~d~lP~D~~~~i 448 (527) ..++.+.++..+..-| +.+..+.. + . .+-|.|.=++..|+=+++-+ T Consensus 457 ----~~~~g~~lL~lI~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~v~~~p~~~s~r~~~~ 532 (725) T protein:vir:92 457 ----MRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNR 532 (725) T ss_pred ----HHHHHHHHHHHHHHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeEEeeccChHHHHHHHH Confidence 2223333332222222 11111111 0 1 12233333444444445555 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc--cccc-ccCCCC Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD--EEDD-QALNGQ 525 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d--~~~~-~~~~~~ 525 (527) +.++.|.+.---........|.... ..+-..-.+++.+++.++.. .....++.. .-+. .... +....+ T Consensus 533 ~~l~ql~~~~~~~~~~~~~~l~~~~-~~~d~~~~~e~~erirkq~~-~~~~~~~~~-------~e~~q~~~~~qqa~~~q 603 (725) T protein:vir:92 533 AEILELLGKTPQGTPEYQLLLLQYF-TLLDGKGVEMMRDYANKQLI-QMGVKKPET-------PEEQQWLVEAQQAKQGQ 603 (725) T ss_pred HHHHHHHHhcccchhHHHHHHHHHh-hcccchHHHHHHHHHHhhhc-hhccCCccc-------hhhhHHHHHHHHHHHhh Confidence 5444444322111110000110000 00111222334444432200 001111100 0000 0000 000001 Q ss_pred CC Q lcl|Aclame:pro 526 PL 527 (527) Q Consensus 526 ~~ 527 (527) +- T Consensus 604 ~~ 605 (725) T protein:vir:92 604 QD 605 (725) T ss_pred hH Confidence 10 No 119 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=98.94 E-value=1.1e-08 Score=64.16 Aligned_cols=485 Identities=9% Similarity=-0.077 Sum_probs=217.1 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChh--heEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTS--DYQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~--~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) ||=+++-..-+...+..+-. ...+.|- ..+.=.+||.|++| +...+|+. +.+| -++-.+.+|+.++ T Consensus 1 m~d~~~~~~~~~~~~~~~~~------~~~~~R~-~a~~d~~fy~G~QW~~~~~~~l~~----q~rp-~~N~i~~~v~~v~ 68 (725) T protein:vir:10 1 MADNENRLESILSRFDADWT------ASDEARR-EAKNDLFFSRVSQWDDWLSQYTTL----QYRG-QFDVVRPVVRKLV 68 (725) T ss_pred CCchHHHHHHHHHHHHHHHH------hhHHHHH-HHHHHHHhhcCCCCCHHHHHHHHh----cCCC-cccchHHHHHHHH Confidence 88777666666655554333 2223332 23355689999988 44444433 2344 3588899999998 Q ss_pred hhhccCcc---ccc-cCcchhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecC-CCCCc---cceEEEE Q lcl|Aclame:pro 79 RFLGQGLK---WEF-SKKDAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDD-EKDEG---SRLSLHE 146 (527) Q Consensus 79 ~~Lg~~~~---~~i-~~~~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~-~k~~~---~r~~i~~ 146 (527) ++--.+.. +.+ +..++++ ...++.+.+.++.+.....+-..+++-|-|++.|.+|- +...+ .+|.+.. T Consensus 69 g~e~~nr~d~~v~p~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~i~~~~ 148 (725) T protein:vir:10 69 SEMRQNPIDVLYRPKDGASPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQVIRREP 148 (725) T ss_pred hhHHhCCcceEEecCCcchHHHHHHHHHHHHHHHHhcCcchHHhHHHHHHhhcCcceeeeeccccCCCCCCCceeeeeee Confidence 88733321 112 2223333 44446666677788888888899999999999987662 11111 1333332 Q ss_pred E--ccceEEEEecCCC-------CCceEEEEEEEeeeCCCCc------------------------------cceeeeee Q lcl|Aclame:pro 147 V--DPSTYFPYEDPRY-------PGQVLGVYLVDEYPHPDSE------------------------------KKNEKCAR 187 (527) Q Consensus 147 v--dP~~~fp~~d~d~-------~~~v~~vh~a~~~~~pd~~------------------------------~~~~k~~r 187 (527) + ||..+| +||++ .+.+.+.+ |-+++.- .....|++ T Consensus 149 i~~~~~~v~--~Dp~a~~~D~sDar~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vrv~E~ 222 (725) T protein:vir:10 149 IHSACSHVI--WDSNSKLMDKSDARHCTVIH----SMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQDTIQIAEF 222 (725) T ss_pred cccCHhHcc--cCchhhccChhhhhhhhhhc----cCCHHHHHHHHHhCCCcccccccccccccccccccCCCeEEEEEE Confidence 2 455444 22221 22222222 3332110 00000000 Q ss_pred -eeeeee-eecCCccccCCccceeeeccccc---------ccccccccccccccceeee---ccCcc-c-cccccccccc Q lcl|Aclame:pro 188 -VQKYMK-TLDDDGKPVPGGAIKYTEELYEP---------GKWDDRPESPLEPDDIKKL---STLTE-E-EPLPEQITTL 251 (527) Q Consensus 188 -r~~~~~-~~~~~g~p~~~g~i~~~~~~~~~---------g~wd~~~~~~~~~~~~~~~---~~~~~-e-~~l~~pi~~i 251 (527) ++.+++ .+.-.-. +.+|.+.. -.+..+ .+|.-. ......+.++. ..|.+ + ++-|.|-+++ T Consensus 223 ~~r~~~~~~~~~~~d-~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~--~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~f 298 (725) T protein:vir:10 223 YEVVEKKETAFIYQD-PVTGEPVS-YFKRDIKDVIDDLADSGFIKI--AERQIKRRRVYKSIITCTAVLKDKQLIAGEHI 298 (725) T ss_pred EEEEEEeeEEEEecc-CCCCceee-cchhhhHHHHHHhhcccchhh--hhccceeeEEEEEeecchhhhcCCCCCCCCce Confidence 000000 0000000 01121110 000000 000000 00000011111 12222 2 4456777889 Q ss_pred ceEeeCCC--CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe-cc-CCCcC-----CCCcc----ccee Q lcl|Aclame:pro 252 PVFHFRGH--PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT-DS-APPRD-----SRGNM----VPWT 318 (527) Q Consensus 252 PVV~~pN~--~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~-~g-~~~~d-----~~G~~----~p~~ 318 (527) |+|.|-.. ..++...+.+-+-+++..++.+|+.+|.+..++..++.-+... .+ ..... +++.+ .+.. T Consensus 299 P~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~ 378 (725) T protein:vir:10 299 PIVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTD 378 (725) T ss_pred eEEEEEeeeeccCCcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCccccccHhhhhHHHHHHhccCCceeeeccccc Confidence 99976543 3467777778899999999999999999999998876654322 11 11000 11111 0111 Q ss_pred cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 319 ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELE 398 (527) Q Consensus 319 v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~ 398 (527) +.+|.+ +.+++.......-.+++.+-++.....|.+++++-...+|. .+++.||+|+...-.--+......-=. T Consensus 379 ~~~g~~----~~~~i~~~~~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~--~~n~~SG~ai~~rq~qg~~~l~~~~Dn 452 (725) T protein:vir:10 379 ENNGEM----PTQPLAYYENPEVPQANAYMLEAATAAVKEVATLGVDAEAV--NGGQVAYDTVNQLNMRADLETYVFQDN 452 (725) T ss_pred ccCccc----ccccCcccCCCCchHHHHHHHHHHHHHHHHHhCCCHHHhCc--CchhhHHHHHHHHHHHHHHHHHHHHHH Confidence 223332 12233333322233477888888889999999999999995 457789999885543222211111101 Q ss_pred HHHHHHHHHHHHHHHHHhhh--hh---hccccc-------------------------ccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 399 LKSVLKQFFYNLVTQWLPAY--EG---VGIDDA-------------------------DKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 399 ~~~~~~q~~~~li~~~L~~~--e~---v~~~~~-------------------------~~~~~v~v~w~d~lP~D~~~~i 448 (527) +.....++.+.++.++-.-| +. +...++ .+.+-|.|.=++..|+=+++-+ T Consensus 453 l~~~~~~~g~~lL~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~~Dv~v~~~p~~~s~r~~~~ 532 (725) T protein:vir:10 453 LATAMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNR 532 (725) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccceeEEEeeccCcHHHHHHHH Confidence 22223233333333222222 11 111100 0112344444455555455655 Q ss_pred HHHHHHHhcCCccHH---HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccc-----ccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAK---KLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEE-----DDQ 520 (527) Q Consensus 449 ~~~v~l~~aGlls~~---ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~-----~~~ 520 (527) +.++.|.+.-=-... .++..+.+.+ ...-.+++.+++.++.. .....++.. |+.+ --+ T Consensus 533 ~~l~qll~~~~~~~~~~~~~l~~~~~~~----d~~~~~e~~erirkq~~-~~~~~~~~~---------~e~~q~~~e~qq 598 (725) T protein:vir:10 533 SEILELLGKTPQGTPEYQLLLLQYFTLL----DGKGVEMMRDYANKQLI-QMGVKKPET---------PEEQQWLVEAQQ 598 (725) T ss_pred HHHHHHHHhccccchhHHHHHHHHhhcC----CchhHHHHHHHHHhhhh-hhccCCccc---------cchhHHHHHHHH Confidence 555555443211000 1111112222 12233334444443210 011111100 0000 000 Q ss_pred cCCCCCC Q lcl|Aclame:pro 521 ALNGQPL 527 (527) Q Consensus 521 ~~~~~~~ 527 (527) +...++- T Consensus 599 ~~~~q~~ 605 (725) T protein:vir:10 599 AKQGQQD 605 (725) T ss_pred HHHhhhH Confidence 0111110 No 120 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=98.92 E-value=1.4e-08 Score=63.59 Aligned_cols=476 Identities=13% Similarity=0.108 Sum_probs=236.7 Q ss_pred CCCChh---hhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc-cccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKR---QYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE-GDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~---qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~~~~p~~~k~v~~ 76 (527) |.-+++ .+..+..-+....+ .-..-+.+++.|.+|..-+--. -.++.. .....++.+-|...+++ T Consensus 1 ~~~~~~~~~~~~~~~~r~~~l~~-------~R~~~e~~w~e~~~y~lP~~~~----~~~~~~~~~~~~~~dst~~~a~~~ 69 (543) T protein:vir:88 1 MAETKREGLAEEGAKAVYERLKN-------DRVPYETRAENCAKVTIPSLFP----KDSDNSSTDYTTPWQAVGARGLNN 69 (543) T ss_pred CcccccCcchHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHhccccCC----CCCCcccccccccccchHHHHHHH Confidence 887555 34444332222222 2234567888999988654110 011111 12235788889999999 Q ss_pred hhhhhccCc----ccc-ccCcc-------------hhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 77 KMRFLGQGL----KWE-FSKKD-------------AKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 77 ~~~~Lg~~~----~~~-i~~~~-------------~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) .++.|+.+. +|| ++..+ ++|+++ +...+.+.|+...+-++=+..++-|-|+.++- T Consensus 70 Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~ly~~ 149 (543) T protein:vir:88 70 LSAKVMLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLALAGTALIYLP 149 (543) T ss_pred HHHHHHHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeec Confidence 888885432 343 22211 223333 34456678999999999999888999998887 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEee---eCCCCccceeeeeeeeeeeeeecCCccccCCccce Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEY---PHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIK 208 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~---~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~ 208 (527) -|+.+....+ .++.+.-+.|.-..|+. |+|..|+.-..+ ..+++- ...++ ..+. + .| ...+. T Consensus 150 ~~~~~~~~~~-~~~~~pl~~y~v~~d~~--G~v~~i~r~~~~~~~~l~~~~--~~~v~--~~~~--~----~p--~~~~~ 214 (543) T protein:vir:88 150 PPDASSNSYN-PMKLYTLHNHVVQRDAF--GNVLQIVTLDKVAYAALPEDV--RNSLS--GGQE--Y----KP--EQELE 214 (543) T ss_pred cCccccceec-ceEEeEcceEEEeeCCC--CCeeeeeeeeeccHHHHhHHh--hHHHH--HHhh--c----CC--ccceE Confidence 6664432222 24445445554445443 566666421100 000000 00000 0000 0 00 01111 Q ss_pred e-eeccccccc--ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhH Q lcl|Aclame:pro 209 Y-TEELYEPGK--WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTM 285 (527) Q Consensus 209 ~-~~~~~~~g~--wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~l 285 (527) . +....+..+ |... + +.+..... .+.-..|+...|++.++=...++++||+|=.++.++-+..||+.- T Consensus 215 v~~~V~pr~~~~~~~~~--~--~~~~~~v~-----~~~~~~~~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~ 285 (543) T protein:vir:88 215 VYTHIYIDDESGDFLSY--Q--EIEGVEVD-----GSDGQYPQDALPWIAVRWTKRDGEHYGRSHVEEYLGDLNSLESLN 285 (543) T ss_pred EEEEEEeecCCCccccc--c--cccCeeee-----cCCCccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHH Confidence 1 100011111 1000 0 00001000 011123356789999999889999999999999999999999999 Q ss_pred HHHHHHHHHhCCceEEeccCCCcCCCCccccee-cCCCeeEecCCC-CceEEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 286 TDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWT-ISPLGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 286 sd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~-v~pg~~~el~~~-~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) -.....+...-+|++-. + .++.+++..+. -++|.++.-..+ -.+..+...+++....+-++.+..+|...=-.- T Consensus 286 ~~~l~~~~~~~~pp~~v---~-~~g~~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~ 361 (543) T protein:vir:88 286 EAMIKFAMISSKVVGLV---N-PNGITQVRRLVKAQTGDFVAGRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLN 361 (543) T ss_pred HHHHHHHHHHhcCceee---c-cccccchhhcccCCCceeecCCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhh Confidence 99999999999987443 1 12223333322 234444432222 223444444577778888888887776532111 Q ss_pred hhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc------cccceeEEEEeC Q lcl|Aclame:pro 364 DIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDD------ADKKLTVTITFR 437 (527) Q Consensus 364 ~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~------~~~~~~v~v~w~ 437 (527) .++..|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.++... ...-+.++++ . T Consensus 362 --~~~~~~~~r~---TAtE-----V~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~~~~v-s 430 (543) T protein:vir:88 362 --SAVQRSGERV---TAEE-----IRYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQATQQIPNLPQEAVEPTVT-T 430 (543) T ss_pred --hhccCCCCcc---cHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhceeeeEE-e Confidence 1111122211 2333 34678888889999999888877765554432222111 1112233333 1 Q ss_pred CCCCCCHHHHHHHHHHHHh----------cCCccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 438 DPKPVNNEKRFAQLLELWE----------AGLIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQAEAADP 502 (527) Q Consensus 438 d~lP~D~~~~i~~~v~l~~----------aGlls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~~aa~d~ 502 (527) ...|..+.+.++.+....+ .-.+-.+.+++.+.++.|.++ ++++.+++-+....++....+++ . T Consensus 431 ~l~~l~r~~~~~~l~~~~~~v~~~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~~~~~-~ 509 (543) T protein:vir:88 431 GAEALGRGQDLDKLTQFLNAVATVSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGLNAAA-G 509 (543) T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccchhhhccCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHH-H Confidence 2244455555555544433 222667888888888888754 55566554332222211111111 1 Q ss_pred cccccccc-CCCCcc---ccccc-CCCCCC Q lcl|Aclame:pro 503 FGAQMAAE-QGIPDE---EDDQA-LNGQPL 527 (527) Q Consensus 503 ~g~~~~~d-~g~~d~---~~~~~-~~~~~~ 527 (527) .|...++| ..+|+. .-+.. .-+.|. T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 539 (543) T protein:vir:88 510 IGSGVAAQATASPEAMESAMDTAGVQPGPI 539 (543) T ss_pred HhhchhhhhccChHHHHHHhhhcCCCCCCC Confidence 11111111 111211 11111 112222 No 121 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=98.91 E-value=1.6e-08 Score=63.37 Aligned_cols=476 Identities=14% Similarity=0.075 Sum_probs=240.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCc-ccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD-EGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d-~~~~~~~~~p~~~k~v~~~~~ 79 (527) |+-+++-==+.....+.+..+-+ .=..-+.+++.|.+|..-+--. -.+.. ......++.+-|...+++.++ T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~----~R~~~e~~w~e~~~~~lP~~~~----~~~~~~~~~~~~~~dst~~~a~~~Laa 72 (535) T protein:vir:33 1 MADSKRTGLGEDGAKATYDRLTN----DRRAYETRAENCAQYTIPSLFP----KESDNESTDYTTPWQAVGARGLNNLAS 72 (535) T ss_pred CChhhhhccChhHHHHHHHHHHH----HhhHHHHHHHHHHHHhcccccC----CCCCcccccccccccccHHHHHHHHHH Confidence 88777522222222222222100 0112378889999997665210 01111 112244678889999999888 Q ss_pred hhccCc----ccc-ccCc-------------chhHHH-------HHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecC Q lcl|Aclame:pro 80 FLGQGL----KWE-FSKK-------------DAKVDD-------AIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDD 134 (527) Q Consensus 80 ~Lg~~~----~~~-i~~~-------------~~~v~~-------~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~ 134 (527) .|+.+. +|| ++.. .+++++ .+..-+.+.|+...+-++=+..++-|.|+.++-.|+ T Consensus 73 ~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~ 152 (535) T protein:vir:33 73 KLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEPE 152 (535) T ss_pred HHHHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecCC Confidence 885432 343 1111 122333 344457789999999999999998999999988876 Q ss_pred CCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCccceeee Q lcl|Aclame:pro 135 EKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTE 211 (527) Q Consensus 135 ~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~ 211 (527) .+ .+.++.+.-+.|+-..|+. |+|..|+.-..+. .++.-+ .... +..+.+.. ...+.+ T Consensus 153 ~~----~~~f~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~ql~~~~~--~~~~-~~~~~k~~--------~~~~~v-- 213 (535) T protein:vir:33 153 GS----YNPMKLYRLSSYVVQRDAY--GNVLQIVTRDQIAFGALPEDVR--SAVE-KSGGEKKM--------DEMVDV-- 213 (535) T ss_pred CC----ceeeEEEEcCeeEEeeCCC--CCeeEEEeeEeecHHHHHHHhh--hhhc-cccccccc--------ccCCeE-- Confidence 44 3445667667766666644 5676665322111 111000 0000 00011001 111111 Q ss_pred cccccccccccccccccccceeeeccCccc--ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHH Q lcl|Aclame:pro 212 ELYEPGKWDDRPESPLEPDDIKKLSTLTEE--EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDED 289 (527) Q Consensus 212 ~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e--~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~ 289 (527) |+-..++.+ -.++.. +..+ ++... ..--.|++..|++.++=...++++||+|=.++.++-+..||+.--... T Consensus 214 --~~~v~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 287 (535) T protein:vir:33 214 --YTHVYLDEE-SGDYLK--YEEV-EDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIV 287 (535) T ss_pred --EEEEEeeCC-CCcEEE--EEEE-eCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 111111111 111211 1111 12221 222235677899999999899999999999999999999999999999 Q ss_pred HHHHHhCCceEEeccCCCcCCCCccccee-cCCCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhc Q lcl|Aclame:pro 290 LIMVFGGLGFYATDSAPPRDSRGNMVPWT-ISPLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAV 367 (527) Q Consensus 290 ~i~~~~g~P~~~~~g~~~~d~~G~~~p~~-v~pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~ 367 (527) ..++..-+|++-. ++ ++..++..+. -++|.++.-..++ .+..+...+++....+-++.+..+|...==.- .+ T Consensus 288 ~~~~~~~~p~~lv---~~-~g~~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~--~~ 361 (535) T protein:vir:33 288 KMSMISAKVIGLV---NP-AGITQPRRLTKAQTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLN--SA 361 (535) T ss_pred HHHHHHhcCceee---cc-ccccchhhcccCCceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhh--hc Confidence 9999999987443 11 2223333322 3345555433332 34445555678888888888888886632110 11 Q ss_pred ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----ccceeEEEEeCCCCCCC Q lcl|Aclame:pro 368 GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA----DKKLTVTITFRDPKPVN 443 (527) Q Consensus 368 G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~----~~~~~v~v~w~d~lP~D 443 (527) +..|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.++...+ ...--+.+.+-.++.. T Consensus 362 ~~~~~~r~---TAtE-----V~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~- 432 (535) T protein:vir:33 362 VQRTGERV---TAEE-----IRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEA- 432 (535) T ss_pred ccCCCccc---cHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHH- Confidence 11122111 1333 346788888899999999888777655555333332221 1111244555455543 Q ss_pred HHHHHHHHHHHH------------hcC-CccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHhcCcccc Q lcl|Aclame:pro 444 NEKRFAQLLELW------------EAG-LIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQAEAADPFGA 505 (527) Q Consensus 444 ~~~~i~~~v~l~------------~aG-lls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~~aa~d~~g~ 505 (527) .+...++.++- +.. .|-.+.+++.+.++.|.++ ++++.++..+.... +..+...+...|. T Consensus 433 -aqr~~~~~~l~~~~~~la~~~P~~~d~~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~~~q~~~-~~~~~~~~~~~g~ 510 (535) T protein:vir:33 433 -IGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAA-QTGVENAAAAGGA 510 (535) T ss_pred -HHHHHHHHHHHHHHHHHHhhChhhhhccCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHHHHHHHH-HHHHHHHHHhhhh Confidence 22222222221 122 2677888888888887653 34444443221111 1111111111111 Q ss_pred ccc--ccCCCC--cccccccCCCCC Q lcl|Aclame:pro 506 QMA--AEQGIP--DEEDDQALNGQP 526 (527) Q Consensus 506 ~~~--~d~g~~--d~~~~~~~~~~~ 526 (527) ..+ .=+|-| .+..|..+-.+- T Consensus 511 ~~~~~~~~~~~~~~~~~~~~g~~~~ 535 (535) T protein:vir:33 511 GVGALATSSPEAMQGAAAKAGLNAT 535 (535) T ss_pred hhcchhhcCChhHHHHHHhccCCCC Confidence 110 000111 011111111111 No 122 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=98.82 E-value=3.5e-08 Score=61.46 Aligned_cols=491 Identities=10% Similarity=-0.081 Sum_probs=213.8 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhhe--EeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDY--QVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~--~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) ||=+++-..-+...+..+-+ ...+.|-. .+.=.+||.|++|+= ..+|+. +.+| -++-.+.+|+.++ T Consensus 1 m~d~~~~~~~~~~~~~~~~~------~~~~~r~~-a~~d~~fy~G~Qw~~~~~~~l~~----q~rp-~~N~i~~~i~~v~ 68 (725) T protein:vir:77 1 MADNENRLESILSRFDADWT------ASDEARRE-AKNDLFFSRVSQWDDWLSQYTTL----QYRG-QFDVVRPVVRKLV 68 (725) T ss_pred CCchHHHHHHHHHHHHHHHH------hhHHHHHH-HHHHHHhhCCCCCCHHHHHHHHh----cCCC-ccccHHHHHHHHH Confidence 88777666666666654433 22333332 234468999997752 223322 3344 3577888899988 Q ss_pred hhhccCcc---cccc-CcchhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecC-CCCC--c-cceEEEE Q lcl|Aclame:pro 79 RFLGQGLK---WEFS-KKDAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDD-EKDE--G-SRLSLHE 146 (527) Q Consensus 79 ~~Lg~~~~---~~i~-~~~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~-~k~~--~-~r~~i~~ 146 (527) ++--.+.. +.+. ..++++ ...++.+.+.++.+.....+-..+++-|-|++.|.+|- .... + .+|.+.. T Consensus 69 g~~~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~~~~i~~~~ 148 (725) T protein:vir:77 69 SEMRQNPIDVLYRPKDGARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQVIRREP 148 (725) T ss_pred hhHHhCCcceEEecCCccHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhhcCcceeeeeecccCCCCCCCceeeEEee Confidence 87733321 1222 223333 44446666677788888888999999999999987651 1111 1 1232222 Q ss_pred --EccceEEEE---e--cCCCCCceEEEEEEEeeeCCCCc------------------------------cceeeeee-e Q lcl|Aclame:pro 147 --VDPSTYFPY---E--DPRYPGQVLGVYLVDEYPHPDSE------------------------------KKNEKCAR-V 188 (527) Q Consensus 147 --vdP~~~fp~---~--d~d~~~~v~~vh~a~~~~~pd~~------------------------------~~~~k~~r-r 188 (527) .||..+|.- . |..+...+.++ +|-++|.- ....-+++ + T Consensus 149 ~~~~~~~v~~Dp~a~~~D~sDar~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv~E~~~ 224 (725) T protein:vir:77 149 IHSACSHVIWDSNSKLMDKSDARHCTVI----HSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEFYE 224 (725) T ss_pred cccChhhceeCchhhccChhhHHHHHHH----hcCCHHHHHHHHhhCCcchhhcccccccccccccccCCCeeEEEEEEE Confidence 245544431 1 11111122222 12232210 01111110 0 Q ss_pred eeeeee-ecCCccccCCccceeeecccccccc-cccccccc------cccceeee---ccCccc--ccccccccccceEe Q lcl|Aclame:pro 189 QKYMKT-LDDDGKPVPGGAIKYTEELYEPGKW-DDRPESPL------EPDDIKKL---STLTEE--EPLPEQITTLPVFH 255 (527) Q Consensus 189 ~~~~~~-~~~~g~p~~~g~i~~~~~~~~~g~w-d~~~~~~~------~~~~~~~~---~~~~~e--~~l~~pi~~iPVV~ 255 (527) +.+++. +..... +.+|.+.. -.+..+..- +...++.+ ...+.++. ..|.++ ++-|.|-+++|+|. T Consensus 225 r~~~~~~~~~~~~-~~tg~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~l~~~~~~~~~~~P~vP 302 (725) T protein:vir:77 225 VVEKKETAFIYQD-PVTGEPVS-YFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVP 302 (725) T ss_pred EEEEeeEEEEecC-CCCcceee-cChhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCceeeccCCcCCCCccceEE Confidence 000000 000000 01122110 000000000 00000000 00011111 123332 44567778899997 Q ss_pred eCCC--CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCce-EEeccCC-CcC-----CCCcc----cceecCCC Q lcl|Aclame:pro 256 FRGH--PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGF-YATDSAP-PRD-----SRGNM----VPWTISPL 322 (527) Q Consensus 256 ~pN~--~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~-~~~~g~~-~~d-----~~G~~----~p~~v~pg 322 (527) |-.. ...+...+.+-+.+++...+.+|+++|.+..++..+..-. ++..+.- ... .++.+ .++...+| T Consensus 303 ~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 382 (725) T protein:vir:77 303 VFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENSG 382 (725) T ss_pred EeeeeeccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccccccchhhhhHHHHHHHhccCCceecccccccCCC Confidence 6544 3467777778899999999999999999999998876543 2222211 000 01110 11222333 Q ss_pred eeEecCCCCceEEeccccChH-HHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHH Q lcl|Aclame:pro 323 GMVEHGQNNKIYRVNGVASLE-PSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKS 401 (527) Q Consensus 323 ~~~el~~~~k~~~ld~~~~la-~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~ 401 (527) ++ ..+++..+. .+++. ++.+-++.....|..++++-...+|. .+++.||+|+...-.-.+......-=.+.. T Consensus 383 ~~----~~~~i~~~~-~~~lp~~~~~ll~~~~~~i~~~tGi~~~~lG~--~~n~~SG~ai~~rq~qg~~~~~~~~Dnl~~ 455 (725) T protein:vir:77 383 DL----PTQPLAYYE-NPEVPQANAYMLEAATSAVKEVATLGVDTEAV--NGGQVAFDTVNQLNMRADLETYVFQDNLAT 455 (725) T ss_pred cc----cccCccccC-CCCchHHHHHHHHHHHHHHHHHhCCCHHHhCC--CchhhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 32 223444444 34554 67788888889999999999999994 456789999885433222211111111122 Q ss_pred HHHHHHHHHHHHHHhhh--hhhccc-ccc-c--------------------------ceeEEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 402 VLKQFFYNLVTQWLPAY--EGVGID-DAD-K--------------------------KLTVTITFRDPKPVNNEKRFAQL 451 (527) Q Consensus 402 ~~~q~~~~li~~~L~~~--e~v~~~-~~~-~--------------------------~~~v~v~w~d~lP~D~~~~i~~~ 451 (527) +..++.+.++..+-.-| +.+..+ +.+ . .+-|.|.=++..|+=+++-++.+ T Consensus 456 ~~~~~g~~lL~lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~Dv~v~~~p~~~s~r~~~~~~l 535 (725) T protein:vir:77 456 AMRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVGPSFQSMKQQNRAEI 535 (725) T ss_pred HHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhccceeeEEeeccchHHHHHHHHHHH Confidence 22233333333222222 111111 100 1 12233333444444444555555 Q ss_pred HHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccc-----cccCCCCC Q lcl|Aclame:pro 452 LELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED-----DQALNGQP 526 (527) Q Consensus 452 v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~-----~~~~~~~~ 526 (527) +.|.+..--........|.... ..+-....+++.+++.++. ......++.. |+++- -++...++ T Consensus 536 ~qll~~~~~~~~~~~~~l~~~~-~l~d~~~~~e~~erirkq~-~~~~~~q~~~---------~~e~q~~~~~qq~~~~q~ 604 (725) T protein:vir:77 536 LELLGKTPQGTPEYQLLLLQYF-TLLDGKGVEMMRDYANKQL-IQMGVKKPET---------PEEQQWLVEAQQAKQGQQ 604 (725) T ss_pred HHHHHhccccchhHHHHHHHhh-ccccchHHHHHHHHHHhhh-hhhhccCCCC---------hhhHHHHHHHHHHHHHhH Confidence 5554432211111111111110 0011222334444443321 1111111110 00000 00000000 Q ss_pred C Q lcl|Aclame:pro 527 L 527 (527) Q Consensus 527 ~ 527 (527) - T Consensus 605 ~ 605 (725) T protein:vir:77 605 D 605 (725) T ss_pred H Confidence 0 No 123 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=98.82 E-value=3.7e-08 Score=61.34 Aligned_cols=489 Identities=9% Similarity=-0.014 Sum_probs=213.4 Q ss_pred CCCCh-hhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhc--CChhhe--Eeee--cCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MGQDK-RQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYL--TNTSDY--QVIL--RGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~~~~-~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~--~~~~~~--~~i~--~g~d~~~~~~~~~p~~~k~ 73 (527) |.=.. +-+.-+...+.-.-. -..+.| +....=.+||+ |++|.= ..+| ||..+ .+.+.-++-.+.+ T Consensus 1 m~e~~~~~~~~~~~~~~~~~~------~~~~~r-~~~~~d~~f~~~~G~QW~~~~~~~l~~~~q~~-grP~~~~N~i~~~ 72 (706) T protein:vir:10 1 MAESRQKQHERVMLRFDRAWS------PQQVVR-EKCIEATRFVRVPGGQWEGATVAGTKLDEQFE-KYPKFEINKVATE 72 (706) T ss_pred CCcchHHHHHHHHHHHHHHHH------HHHHHH-HHHHHHHHhhccCCccCCHHHHHHHHhhhhhc-CCCceEecchHHH Confidence 54421 122222222221111 001111 11122235663 654441 1122 12211 3456777889999 Q ss_pred HHhhhhhhccCcc---cccc--Ccchh----HHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEec--C----CCCC Q lcl|Aclame:pro 74 IEAKMRFLGQGLK---WEFS--KKDAK----VDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGD--D----EKDE 138 (527) Q Consensus 74 v~~~~~~Lg~~~~---~~i~--~~~~~----v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d--~----~k~~ 138 (527) |++++++.-.+.. +.+. ..+++ ....++.+.+.++.+.....+-.++++-|=||+.+..| . ...+ T Consensus 73 v~~v~g~~~~nr~~~~v~P~~~~~d~~~Ae~l~~l~~~~~~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~~~~d~~~~~ 152 (706) T protein:vir:10 73 LNRIISEYRNNRISVKFRPGDNAASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTTSFVNEYDPMDER 152 (706) T ss_pred HHHHhhHHHhCCCceEEecCCCCchHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCcceEEeeeccccccCCCCCC Confidence 9999999843331 1222 12223 24455777778889999999999999999999988654 1 1221 Q ss_pred ccceEEEEE-ccc-eE-EEE----ecCCCCCceEEEEEEE------eeeC-------------------CCCccceeeee Q lcl|Aclame:pro 139 GSRLSLHEV-DPS-TY-FPY----EDPRYPGQVLGVYLVD------EYPH-------------------PDSEKKNEKCA 186 (527) Q Consensus 139 ~~r~~i~~v-dP~-~~-fp~----~d~d~~~~v~~vh~a~------~~~~-------------------pd~~~~~~k~~ 186 (527) .+|.|+.+ ||. .+ |-. .|..+.+.+.+.+... .|+. ++. ...+. T Consensus 153 -~~i~i~~v~~p~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d~---~~~~e 228 (706) T protein:vir:10 153 -QRIAVEPIYDPARSVWFDPDAKKYDKSDALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPDV---VYIAK 228 (706) T ss_pred -ccceeeeeccchhceecCchhcccChhhcceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCCc---ceecc Confidence 25555544 564 33 221 2333333444443211 1221 110 00000 Q ss_pred ------eeeeeeeeecCCccccCCcccee-eecccccccccccccc--------cccc--cceeeeccCccc-ccccccc Q lcl|Aclame:pro 187 ------RVQKYMKTLDDDGKPVPGGAIKY-TEELYEPGKWDDRPES--------PLEP--DDIKKLSTLTEE-EPLPEQI 248 (527) Q Consensus 187 ------rr~~~~~~~~~~g~p~~~g~i~~-~~~~~~~g~wd~~~~~--------~~~~--~~~~~~~~~~~e-~~l~~pi 248 (527) ++..+..+.. +.++++.. +..+..- .++..... ++.. ..+..++..+.+ ++-|-|- T Consensus 229 yy~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~~~p~~~ 302 (706) T protein:vir:10 229 YYEVRKESVDVISYRQ-----PLTQEIATYDSEQIAD-IQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEKPRRIPG 302 (706) T ss_pred cccccceeEEEEEeec-----cccCCceeeccchhhh-hHHHHhhCCchhhhhcccceeeEEEEeeccccccccCCCCCC Confidence 0001110000 01111111 0000000 00000000 0001 111222333333 2234455 Q ss_pred cccceEeeCCCCC--CCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe--cc---C------CCcCC-C-Cc Q lcl|Aclame:pro 249 TTLPVFHFRGHPI--MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT--DS---A------PPRDS-R-GN 313 (527) Q Consensus 249 ~~iPVV~~pN~~~--~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~--~g---~------~~~d~-~-G~ 313 (527) +.+|+|.|-.... ++.....+-+.+++..++.+|+++|.+.-++..++.=+... +. . +..+. + -. T Consensus 303 ~~~P~vP~~g~r~~~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 382 (706) T protein:vir:10 303 EHIPLIPVYGKRWFIDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPGQTPIVDMEQIRGLEQHWEGRNRKRPAFLP 382 (706) T ss_pred CccceEEEeeccccccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHhhhcccccccchh Confidence 9999998765433 44444566788999999999999999999987776532111 11 0 00000 0 01 Q ss_pred ccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHH-hccHHHHH Q lcl|Aclame:pro 314 MVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLK-LSAILSSC 392 (527) Q Consensus 314 ~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~-~~PLlakv 392 (527) ..+....+|.++. ...++..++...-.+++.+-++.....|.+++++-...+|. .|+ .||+|++.. .+-..+.. T Consensus 383 ~~~~~~~~g~i~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~--~sn-~SG~Ai~~rq~qg~~~~~ 457 (706) T protein:vir:10 383 LRTVTDKTGNVVA--PANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQM--PSN-VARETVNSLLNRSDMASF 457 (706) T ss_pred cccccCCCCcccc--cccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCC--ccc-hHHHHHHHHHHHHHHHHH Confidence 1123344566543 23455555532233457777888888999999999999994 444 599998843 22222211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--hhh---cccccc--------------------------cceeEEEEeCCCCC Q lcl|Aclame:pro 393 AEQELELKSVLKQFFYNLVTQWLPAY--EGV---GIDDAD--------------------------KKLTVTITFRDPKP 441 (527) Q Consensus 393 ~~krl~~~~~~~q~~~~li~~~L~~~--e~v---~~~~~~--------------------------~~~~v~v~w~d~lP 441 (527) .-. =-+.....++.+.++..+..-| +.+ .+.++. ..+-|.|.=++..| T Consensus 458 ~~~-Dnl~~~~~~~g~~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~~p~~~ 536 (706) T protein:vir:10 458 IYL-DNMAKSLKRAGEIWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDVGPSYS 536 (706) T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEecccCcc Confidence 100 0111222233333332222222 111 111000 11223344456777 Q ss_pred CCHHHHHHHHHHHHhcCCccHHHH---HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 442 VNNEKRFAQLLELWEAGLIPAKKL---TEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 442 ~D~~~~i~~~v~l~~aGlls~~ta---~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) +-+++-++.++.|.+++..-..+. +..+.+.+. -.-.+++.|++.++.. ..+ ....-.++++- T Consensus 537 t~r~~~~~~m~el~~~~~p~~~~~~~l~~~~~~~~d----~p~~~e~~e~irk~~~----~q~------~~~~~~~~eq~ 602 (706) T protein:vir:10 537 ARRDATVNALTQLLQGMLPQDPMRPALMGIIIDNME----GEGLDDFKAFNRRQLL----TQG------IVKPRNQQEQA 602 (706) T ss_pred hHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHhhcC----ccchHHHHHHHHHhhc----ccC------CccccchhHHH Confidence 778888888888888765332211 122233332 1122334444432200 000 00000000000 Q ss_pred cc----cCCCCCC Q lcl|Aclame:pro 519 DQ----ALNGQPL 527 (527) Q Consensus 519 ~~----~~~~~~~ 527 (527) .. +.-..+. T Consensus 603 ~~~q~qq~q~~q~ 615 (706) T protein:vir:10 603 IVQQAQQAQATQP 615 (706) T ss_pred HHHHHHHHHHHHH Confidence 00 0000000 No 124 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=98.71 E-value=9.2e-08 Score=59.15 Aligned_cols=462 Identities=13% Similarity=0.104 Sum_probs=238.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCcc-cccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDE-GDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~~~~p~~~k~v~~ 76 (527) |.- +.+.+. ....+.+.. .-.+| +.+++.|.+|..-+-.. -.|.+. .....++.+.|...+++ T Consensus 1 ~~~-~~~~~~-~~~~~r~~~-------l~~~R~~~e~~w~e~~~y~lP~~~~----~~~~~~~~~~~~~~dst~~~a~~~ 67 (522) T protein:vir:94 1 MAE-REGFAA-EGAKAVYDR-------LKNGRQPYETRAQNCAAVTIPSLFP----KESDNSSTEYTTPWQAVGARCLNN 67 (522) T ss_pred Ccc-cchhhH-HHHHHHHHH-------HHHHhhHHHHHHHHHHHHhcccccC----CCCCcccccccccccccHHHHHHH Confidence 544 222211 112222221 11233 67788888887665211 011111 12344788999999999 Q ss_pred hhhhhccCc----ccc-ccCc-------------chhHH-------HHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 77 KMRFLGQGL----KWE-FSKK-------------DAKVD-------DAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 77 ~~~~Lg~~~----~~~-i~~~-------------~~~v~-------~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) .++.|+.+. +|| ++.. .++|+ +.+...+.+.|+...+-++=+..++-|.|+.++. T Consensus 68 Las~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~ 147 (522) T protein:vir:94 68 LAAKLMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLYIP 147 (522) T ss_pred HHHHHHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeee Confidence 888885433 343 1111 12233 3334466678999999999999988999997665 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeC---CCCccceeeeeeeeeeeeeec-CCccccCCccc Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPH---PDSEKKNEKCARVQKYMKTLD-DDGKPVPGGAI 207 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~---pd~~~~~~k~~rr~~~~~~~~-~~g~p~~~g~i 207 (527) =|+. +.+ ..++.+.-+.|+-..|+. |+|..|+.-..|.- |++- .+... +...| ...+ T Consensus 148 ~~~~-~~~--~~~~~~pl~~y~v~~d~~--G~vd~i~r~~~~~~~~l~~~~------------~~~~~~~~~~p--~~~v 208 (522) T protein:vir:94 148 EPEQ-GTY--SPMRMYRLVSYVVQRDAF--GNILQIVTIDKVAFSALPEDV------------KSQLNADDYEP--DTEL 208 (522) T ss_pred ccCC-Cce--eeEEEEEcceEEEeeCCC--cCeEEEeeeeeccHHhcchHH------------HHHHhcccCCc--cceE Confidence 4432 222 234566667766666654 66777753322211 1110 00111 10111 1111 Q ss_pred ee-eecccccccccccccccccccceeeeccCccc-cccc-ccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhh Q lcl|Aclame:pro 208 KY-TEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLP-EQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQT 284 (527) Q Consensus 208 ~~-~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~-~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~ 284 (527) .. +....+-++|- | ++.+ ++... .... .|+...|++.++=...++++||+|=.++.++-+..||+. T Consensus 209 ~v~~~v~~~~~~~~------~----~~~~-~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l 277 (522) T protein:vir:94 209 EVYTHIYRQDDEYL------R----YEEV-EGIEVTGTDGSYPLTACPYIPVRMVRLDGEDYGRSYCEEYLGDLNSLETI 277 (522) T ss_pred EEEEEEEeeCCcee------E----Eeec-cCceecccCCCCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHH Confidence 11 11111111111 0 0111 11111 1112 356779999999998999999999999999999999999 Q ss_pred HHHHHHHHHHhCCceEEeccCCCcCCCCcccce-ecCCCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 285 MTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPW-TISPLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGI 362 (527) Q Consensus 285 lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~-~v~pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~t 362 (527) --.....+...-+|++-. + .|+.+++..+ +-++|.++.-..++ .+..+...+++....+-++.+..+|...=-. T Consensus 278 ~~~~l~~~~~~~~p~~~v---~-~~g~~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~ 353 (522) T protein:vir:94 278 TEAITKMAKVASKVVGLV---N-PNGITQPRRLNKAATGEFVAGRVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAFLL 353 (522) T ss_pred HHHHHHHHHHHhCCceee---c-ccccccchheeccCCceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhh Confidence 999999999999997543 1 1223333332 24456665533332 3444444457888888888888888763311 Q ss_pred chhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc----cceeEEEEeCC Q lcl|Aclame:pro 363 PDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD----KKLTVTITFRD 438 (527) Q Consensus 363 P~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~----~~~~v~v~w~d 438 (527) - .++..|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.++...+. ..--+.+.+-. T Consensus 354 ~--~~~~~~~~r~---TAtE-----V~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~v~v~~~s 423 (522) T protein:vir:94 354 N--SAVQRNAERV---TAEE-----IRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQSAGMIPDLPKEAVEPTVST 423 (522) T ss_pred h--hhccCCCccc---cHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccEEeeEec Confidence 1 1221222211 1323 3467888888999999998888776555553332222111 11123444333 Q ss_pred CCCCCHHHHHHHHHHH---Hh-------c---CCccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 439 PKPVNNEKRFAQLLEL---WE-------A---GLIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQAEAA 500 (527) Q Consensus 439 ~lP~D~~~~i~~~v~l---~~-------a---Glls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~~aa~ 500 (527) ++. ..+..+++.++ .+ . -.|-.+.+++.+.++.|.++ +.++.++..+...+ +....+++ T Consensus 424 ~La--~~qr~~~~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~-~~~~~~~~ 500 (522) T protein:vir:94 424 GLE--ALGRGQDLEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSS-QQAVVQGA 500 (522) T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHH-HHHHHHHH Confidence 333 33322222221 11 1 12567788888888888644 35555554433222 22222233 Q ss_pred CcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 501 DPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 501 d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ...+...++ +.+.++..+.++. T Consensus 501 ~~~~~~~~a--~~~~~~~~~~~~~ 522 (522) T protein:vir:94 501 SAAGANMGA--AVGQGAGEDMAQA 522 (522) T ss_pred HHHHHHhhh--hhhcccchhhhcC Confidence 332322222 3344444444444 No 125 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=98.67 E-value=1.3e-07 Score=58.39 Aligned_cols=420 Identities=15% Similarity=0.118 Sum_probs=199.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHH-HHHHhcC--ChhheEeeecCCcccccc---ccc------CC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRL-YEDMYLT--NTSDYQVILRGGDEGDQR---PIY------VP 68 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~-~~~~y~~--~~~~~~~i~~g~d~~~~~---~~~------~p 68 (527) ||..-+||+.+...= ........++..-+. +..|-.. ++..+.-|||..+..+.+ ..| .+ T Consensus 1 ~~~~~d~~g~p~~~~--------~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~ 72 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQ--------QLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDA 72 (526) T ss_pred CCeeECCCCCccccc--------cccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhCh Confidence 999999998765421 111112233332211 1111100 244555555533322211 121 11 Q ss_pred chhHHHHhhhhhhccCccccccCcc------hhHHHHHHHHHHh-cCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKKD------AKVDDAIRVLFDR-ENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~~------~~v~~~lr~w~~~-e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) .-.-.+++..+-+ .+.+|.|.-+. .+..++++.|+.+ .+|+.-+...- +|+..|-+|+-|.|+..-+ + T Consensus 73 ~i~s~l~~Rk~av-~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~g---~ 147 (526) T protein:vir:99 73 HLFAEMSKRKRAI-LGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGR---E 147 (526) T ss_pred HHHHHHHHHHHHH-hCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHH-HhhhhcceeEEEEEeecCC---c Confidence 1122344433333 45588775432 2356678888853 35665555555 5888999999999996422 2 Q ss_pred eEEE---EEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccc Q lcl|Aclame:pro 142 LSLH---EVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGK 218 (527) Q Consensus 142 ~~i~---~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~ 218 (527) ..++ ..+|+ +|-+ ++++. +.+ .+ ..+ T Consensus 148 ~~~~~l~~r~~~-~f~~-------------------~~~~~-~~l------~~---~~~--------------------- 176 (526) T protein:vir:99 148 WMPLAFHHRPQS-WFQL-------------------NPEDQ-NEL------RL---RDN--------------------- 176 (526) T ss_pred eeEEEeeeeccc-ceee-------------------ccCCC-cEE------Ee---cCC--------------------- Confidence 2221 11111 1110 11111 000 00 000 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) ..+-.+|| |.+||-..| .+.++.++|.+-+..+.-..--=|..+.+....++..|.| T Consensus 177 -------------------~~~g~~l~-~~k~i~~~~---~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P 233 (526) T protein:vir:99 177 -------------------SPAGEALQ-PFGWIIHRP---RARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) T ss_pred -------------------CCCceeec-CCCeEEEee---cCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCc Confidence 00011233 455554443 3356899999999988777777788999999999999999 Q ss_pred eEEec-cCCCcCC-CCcc--cceecCCCeeEecCCCCceEEecccc-ChHHHHHHHHHHHHHHHHhhcCchhhccccccc Q lcl|Aclame:pro 299 FYATD-SAPPRDS-RGNM--VPWTISPLGMVEHGQNNKIYRVNGVA-SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAA 373 (527) Q Consensus 299 ~~~~~-g~~~~d~-~G~~--~p~~v~pg~~~el~~~~k~~~ld~~~-~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s 373 (527) +.+.. .....++ .-.. .-..++-+...-+|++..+..+..+. +...|.+.+++..++|+.+ .+|.+-.| T Consensus 234 ~~igky~~~a~~~ek~~L~~av~~i~~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~------iLGqtlTs 307 (526) T protein:vir:99 234 IRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKA------VLGGTLTS 307 (526) T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHH------Hhhhhhcc Confidence 76653 2111221 1111 11224445556688888888888433 5566889999999998874 34443222 Q ss_pred c----cccHHHHH-HHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhccccc-ccceeEEEEeCCCCCCCHHH Q lcl|Aclame:pro 374 V----AESGIALD-LKLSAILSSCAEQELELKSVLKQFF-YNLVTQWLPAYEGVGIDDA-DKKLTVTITFRDPKPVNNEK 446 (527) Q Consensus 374 ~----a~SG~ALq-l~~~PLlakv~~krl~~~~~~~q~~-~~li~~~L~~~e~v~~~~~-~~~~~v~v~w~d~lP~D~~~ 446 (527) . ..|-.|+- ....-....++. -.+.+...+ ++++..++ .+-+... +....+.++|...-|.|.++ T Consensus 308 ~~~~g~~gS~a~g~vh~~v~~di~~a----Da~~i~~tln~~Li~~l~----~~N~~~~~~~~~~p~~~~~~~e~eDl~~ 379 (526) T protein:vir:99 308 TTSQSGGGAFALGQVHNEVRHDLLAS----DARQLAATLSRDLLWPLL----VLNRPGSPDVRRAPRLVFDLREQADITS 379 (526) T ss_pred ccccCcchhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HhCCCCcCCccccceEEeCCCCcccHHH Confidence 1 11222331 211111111111 111122222 23433332 3333322 22345778999999999999 Q ss_pred HHHHHHHHHhcCC-ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccc--cccCCCCcccc-cccC Q lcl|Aclame:pro 447 RFAQLLELWEAGL-IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQM--AAEQGIPDEED-DQAL 522 (527) Q Consensus 447 ~i~~~v~l~~aGl-ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~--~~d~g~~d~~~-~~~~ 522 (527) .++.+.+|...|+ ++.+...+++ |.+.+.++ +..+...+..+... +......+.. ......++... |+.. T Consensus 380 ~a~~~~~L~~~G~~i~~~~i~e~~----Gip~~~~~-e~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~l 453 (526) T protein:vir:99 380 MAQSIPALVNVGLEIPSAWVYDKL----GIPQPAKN-EPVLRSAAQPAILS-RQHGQRVAALATIVGPRYGDQQALDKAL 453 (526) T ss_pred HHHHHHHHHhCCCccCHHHHHHHh----CCCCCCCc-ccccCCCCCCcccc-cccccccccccccccccCcchhhHHHHH Confidence 9999999999998 8888777766 44333322 22211111000000 0000000000 00000011000 0000 Q ss_pred CC------CCC Q lcl|Aclame:pro 523 NG------QPL 527 (527) Q Consensus 523 ~~------~~~ 527 (527) .. .+. T Consensus 454 ~~~~~~~~~~~ 464 (526) T protein:vir:99 454 ADLPAKDMQNQ 464 (526) T ss_pred HHHHHHHHHHH Confidence 00 000 No 126 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=98.67 E-value=1.3e-07 Score=58.38 Aligned_cols=420 Identities=15% Similarity=0.111 Sum_probs=198.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcC---ChhheEeeecCCcccccc---ccc------CC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLT---NTSDYQVILRGGDEGDQR---PIY------VP 68 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~---~~~~~~~i~~g~d~~~~~---~~~------~p 68 (527) |+...+||+.+... ..+......++..-+.--..|-. ++..|.-|||--+..+.+ ..| .+ T Consensus 1 ~~~~~d~~g~p~~~--------~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~ 72 (526) T protein:vir:79 1 MAQIVDVYGNPIRP--------QQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDA 72 (526) T ss_pred CCeeeCCCCCccCc--------cccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhCh Confidence 99999999876431 11111222333321111111111 134444455422222211 121 11 Q ss_pred chhHHHHhhhhhhccCccccccCc------chhHHHHHHHHHHh-cCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKK------DAKVDDAIRVLFDR-ENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~------~~~v~~~lr~w~~~-e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) --.-.+++..+-+ .+.+|.|.-+ ..+..++++.|+.+ .+|+.-+...-. |+..|-+|+-|.|+..-+ + T Consensus 73 ~i~s~l~~Rk~av-~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g---~ 147 (526) T protein:vir:79 73 HLFAEMSKRKRAI-LGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALD-GIGHGYSCIELEWALQGR---E 147 (526) T ss_pred HHHHHHHHHHHHH-hCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHh-hhhhcceeEEEEEeecCC---c Confidence 1122444433333 4568887543 12456678888853 346655555444 888999999999996322 2 Q ss_pred eEEEE---EccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccc Q lcl|Aclame:pro 142 LSLHE---VDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGK 218 (527) Q Consensus 142 ~~i~~---vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~ 218 (527) ..++. .+|+ +|-+ ++++.. ..+ + ..+ T Consensus 148 ~~~~~l~~r~~~-~F~~-------------------~~~~~~-~l~------~---~~~--------------------- 176 (526) T protein:vir:79 148 WMPLAFHHRPQS-WFQL-------------------NPEDQN-ELR------L---RDN--------------------- 176 (526) T ss_pred eeEEEeeeeccc-ceEe-------------------ccCCCc-EEE------e---cCC--------------------- Confidence 22211 1111 1110 111110 000 0 000 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) ...-.+|| |.+||-..| .+.++.++|.+-+..+.-..--=|..+.+....++..|.| T Consensus 177 -------------------~~~g~~l~-~~k~iv~~~---~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P 233 (526) T protein:vir:79 177 -------------------SPAGEALQ-PFGWIIHRP---RARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLP 233 (526) T ss_pred -------------------CCCceeec-CCceEEEee---cCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCc Confidence 00011233 455654443 3356899999999988777777788999999999999999 Q ss_pred eEEec-cCCCcCCC-Cccc--ceecCCCeeEecCCCCceEEeccc-cChHHHHHHHHHHHHHHHHhhcCchhhccccccc Q lcl|Aclame:pro 299 FYATD-SAPPRDSR-GNMV--PWTISPLGMVEHGQNNKIYRVNGV-ASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAA 373 (527) Q Consensus 299 ~~~~~-g~~~~d~~-G~~~--p~~v~pg~~~el~~~~k~~~ld~~-~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s 373 (527) +.... .....+++ .... -..++-....-+|++..+..+... .+...|...+++..+.|+.+- +|.+-.| T Consensus 234 ~~igky~~~a~~~ek~~L~~av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i------LGqtlTs 307 (526) T protein:vir:79 234 IRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV------LGGTLTS 307 (526) T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH------hhhhhcc Confidence 76643 22112221 1111 122445556668888899888853 355668999999999998743 4433222 Q ss_pred c----cccHHHHH-HHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhccccc-ccceeEEEEeCCCCCCCHHH Q lcl|Aclame:pro 374 V----AESGIALD-LKLSAILSSCAEQELELKSVLKQFF-YNLVTQWLPAYEGVGIDDA-DKKLTVTITFRDPKPVNNEK 446 (527) Q Consensus 374 ~----a~SG~ALq-l~~~PLlakv~~krl~~~~~~~q~~-~~li~~~L~~~e~v~~~~~-~~~~~v~v~w~d~lP~D~~~ 446 (527) . ..|..|+- ....-....++. -.+.+...+ +.++..++ .+-+... +....+.++|...-|.|.++ T Consensus 308 ~~~~g~~gS~a~g~vh~~v~~di~~a----Da~~i~~tln~~Li~~l~----~~N~~~~~~~~~~p~~~~~~~e~eDl~~ 379 (526) T protein:vir:79 308 TTSQSGGGAFALGQVHNEVRHDILAS----DARQLAATLSRDLLWPLL----VLNRPGSPDVRRAPRLVFDLREQADITS 379 (526) T ss_pred ccccCcchhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HhCCCCcCCccccceEEeCCCCcccHHH Confidence 1 11223332 111111111111 112222222 23333332 3333322 22335678999999999999 Q ss_pred HHHHHHHHHhcCC-ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccc--cCCCCcccc-cccC Q lcl|Aclame:pro 447 RFAQLLELWEAGL-IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAA--EQGIPDEED-DQAL 522 (527) Q Consensus 447 ~i~~~v~l~~aGl-ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~--d~g~~d~~~-~~~~ 522 (527) .++.+.+|...|+ ++.+...+++ |.+.+.++. .++...+..+... +...+..+.... ....++... |+.. T Consensus 380 ~a~~~~~L~~~G~~i~~~~i~e~~----gip~~~~~e-~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~l 453 (526) T protein:vir:79 380 MAQSIPALVNVGLEIPSAWVYDKL----GIPQPAKNE-PVLRPAAQPAILS-RQHGQRVAALATIVGPRYGDQQALDKAL 453 (526) T ss_pred HHHHHHHHHhCCCcCCHHHHHHHh----CCCCCCCch-hhccccCCccccc-cccccccccccccccccCchhhHHHHHH Confidence 9999999999999 7777776665 444443322 2211111100000 000000000000 000111000 0000 Q ss_pred CCC----------CC Q lcl|Aclame:pro 523 NGQ----------PL 527 (527) Q Consensus 523 ~~~----------~~ 527 (527) ... |+ T Consensus 454 ~~~~~~~~~~~~~~~ 468 (526) T protein:vir:79 454 ADLPAKDMQNQANDL 468 (526) T ss_pred HHHHHHHHHHHHHHH Confidence 000 00 No 127 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=98.64 E-value=1.6e-07 Score=57.86 Aligned_cols=489 Identities=9% Similarity=-0.018 Sum_probs=209.1 Q ss_pred CCCCh-hhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhc--CChhheE------eeecCCcccccccccCCchh Q lcl|Aclame:pro 1 MGQDK-RQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYL--TNTSDYQ------VILRGGDEGDQRPIYVPNGE 71 (527) Q Consensus 1 m~~~~-~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~--~~~~~~~------~i~~g~d~~~~~~~~~p~~~ 71 (527) |+=.. +-+..+...++.+-. ...+.|-++ ..=.+||+ |+.|+=. .+++ ..++.+.-++-.+ T Consensus 1 ma~~~~~~l~~~~~~~~~~~~------~~~~~r~~~-~~d~~f~~~~G~QW~~~~~~~~~~~l~---~~~~P~~~~N~i~ 70 (720) T protein:vir:35 1 MAETLQKRHEQIMRKFDRAHS------PQEAVREKC-LEATRFARVPGGQWEGATAAGSELGKH---FEKYPKFEINKIS 70 (720) T ss_pred CchHHHHHHHHHHHHHHHHHh------hhHHHHHHH-HHHHhhhccCCCCCCHHHHHHHHHHHh---hCCCCeEEEccHH Confidence 33221 111111111111111 111111111 11225564 6666411 1221 1123446778899 Q ss_pred HHHHhhhhhhccCc-cc--cccCc--chhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCC-----C Q lcl|Aclame:pro 72 KLIEAKMRFLGQGL-KW--EFSKK--DAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEK-----D 137 (527) Q Consensus 72 k~v~~~~~~Lg~~~-~~--~i~~~--~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k-----~ 137 (527) .+|+.++++--.+. +. .+..+ ++++ ...++.+.+.++.+...-.+-..+++-|=||+.|.+|-.+ . T Consensus 71 ~~v~~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~v~~d~~~~~d~~~ 150 (720) T protein:vir:35 71 TELNRIISEYRHNRITVKFRPGDKTASEALANKLNGLFRADYEETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPMD 150 (720) T ss_pred HHHHHHHhHHHhCCCceEEEcCCCcchHHHHHHHHHHHHHHHHhcCchHHHhHHHHHhhhccceeEEeeecccccCCCCc Confidence 99999999984333 11 22322 2332 3444667777778888888889999999999999886211 1 Q ss_pred CccceEEEEE-ccc-eEE--EE---ecCCCCCceEEEEEEEeeeCCCCcc--------------------------ceee Q lcl|Aclame:pro 138 EGSRLSLHEV-DPS-TYF--PY---EDPRYPGQVLGVYLVDEYPHPDSEK--------------------------KNEK 184 (527) Q Consensus 138 ~~~r~~i~~v-dP~-~~f--p~---~d~d~~~~v~~vh~a~~~~~pd~~~--------------------------~~~k 184 (527) ...+|+|+.+ +|. .+| |. .|..+...+.+.. |-++++-+ .... T Consensus 151 ~~~~i~i~~v~~~~~~v~~Dp~a~~~D~sDar~~~~~~----~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~~~~~~v~i 226 (720) T protein:vir:35 151 ERQRICLEPIYDPARSVWFDPDAKKYDKSDAEWAFCMY----SLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDVVYI 226 (720) T ss_pred ccceeeEecccCchhheeecccccccChhhhhhhhhhc----CCCHHHHHHhCCCccccccccccccccccccCCCceEE Confidence 3357777764 443 233 32 2222222233222 22222110 1111 Q ss_pred eee-eeeeeeeecCCccccCCccce-eeeccc-----cccc-ccccccccccccceee----eccCcc-ccccccccccc Q lcl|Aclame:pro 185 CAR-VQKYMKTLDDDGKPVPGGAIK-YTEELY-----EPGK-WDDRPESPLEPDDIKK----LSTLTE-EEPLPEQITTL 251 (527) Q Consensus 185 ~~r-r~~~~~~~~~~g~p~~~g~i~-~~~~~~-----~~g~-wd~~~~~~~~~~~~~~----~~~~~~-e~~l~~pi~~i 251 (527) +++ .+.+++...-.-..+.+|.+. +..... .++. +-.+ -.......+++ ...... +.+-|-|.+++ T Consensus 227 ~E~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~v~~~~~~g~~~l~~~~~~p~~~f 305 (720) T protein:vir:35 227 AKYYEVKKESVDVVSFQNPLTSETVTYDSDQLELVEDELADIGFIE-AARRTIKRRRVYVSVVDGEGFLEKAQRIPGEHI 305 (720) T ss_pred EEeeEEEEEEEEEEEeecCCCCCeeecCCccHHHHHHHHhhhcccc-ccccceeEEEEEEEeeccchhcccCCCCCCCcc Confidence 110 000000000000001122221 110000 0000 0000 00011111111 112222 24567789999 Q ss_pred ceEeeCCCCC--CCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEecc-CCCcCC------C--Cc------c Q lcl|Aclame:pro 252 PVFHFRGHPI--MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDS-APPRDS------R--GN------M 314 (527) Q Consensus 252 PVV~~pN~~~--~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g-~~~~d~------~--G~------~ 314 (527) |||.|-..+. ++......-+-+++..++.+|+..|.+..++..++.= ...| +...++ + .. . T Consensus 306 P~vP~~g~r~~~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~--~~~~a~~~~~~~~~~~a~~~~~~~~~l~~ 383 (720) T protein:vir:35 306 PLIPVYGKRWFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSATQDTGS--IPIVGKSQIKTLEKYWANRNKNRPAFLPL 383 (720) T ss_pred ceEEEEeeeeccCCCcccceeeecchhHHHHHHHHHHHHHHHHHcCCcc--ccccCcchHHHHHHHhhcccccccccccc Confidence 9998866433 5666566778999999999999999999998765432 2112 111000 0 00 1 Q ss_pred cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHH-HhccHHHHHH Q lcl|Aclame:pro 315 VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDL-KLSAILSSCA 393 (527) Q Consensus 315 ~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql-~~~PLlakv~ 393 (527) .++...+|.+...+ ++|.......-...+.+.++.-...|.+++++-...+|. .|+ .||+|++. ..+-..+... T Consensus 384 ~~~~~~~G~~~~~~--~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~--~sn-~SG~Ai~~rq~qg~~~~~~ 458 (720) T protein:vir:35 384 NEIVDKQGNIIAPP--TPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPM--PSN-IAKETVNHLMHRSDMSSFI 458 (720) T ss_pred ccccccCcccccCC--CcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCc--ccc-hHHHHHHHHHHHHHHHHHH Confidence 12233466665443 456655532223345566777778899999999999994 345 69999985 3333322221 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh-----hhcccccc--------------------------cceeEEEEeCCCCCC Q lcl|Aclame:pro 394 EQELELKSVLKQFFYNLVTQWLPAYE-----GVGIDDAD--------------------------KKLTVTITFRDPKPV 442 (527) Q Consensus 394 ~krl~~~~~~~q~~~~li~~~L~~~e-----~v~~~~~~--------------------------~~~~v~v~w~d~lP~ 442 (527) -.- -+.....++.+.++..+-.-|. .+...++. ..+-|.|.=++..++ T Consensus 459 ~~D-nl~~~~~~~g~~lL~lI~~~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~~~p~~~s 537 (720) T protein:vir:35 459 YLD-NMAKSLKRAGEVWLSMAREVYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVDVGPSYTA 537 (720) T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEecccCccc Confidence 111 0112222333333222222221 11111000 111233444556666 Q ss_pred CHHHHHHHHHHHHhcCCcc----HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 443 NNEKRFAQLLELWEAGLIP----AKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 443 D~~~~i~~~v~l~~aGlls----~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) -+++-.+.++.+..+ +.+ ...++..+.+.+. .| ..++..|++.+. .. +. +..+.-.++.+- T Consensus 538 ~req~~~~m~qll~~-~~p~~~~~~~~~~~ile~~d--~p--~~~e~~erirk~-~~------~~---~~~~~~~~e~qq 602 (720) T protein:vir:35 538 RRDATVSVLTNLLAG-MLPQDPMRQVLQGIILDNME--GE--GLDEFKEYNRKQ-LL------TQ---GVVKPRNTEEEQ 602 (720) T ss_pred HHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcC--ch--hHHHHHHHHHhh-cc------hh---cccCccChhHHH Confidence 667767766666542 111 1112222233332 11 123333444321 00 00 001111111100 Q ss_pred ccc----C---CCCCC Q lcl|Aclame:pro 519 DQA----L---NGQPL 527 (527) Q Consensus 519 ~~~----~---~~~~~ 527 (527) ..+ . ...++ T Consensus 603 ~~a~~qq~~qq~~~e~ 618 (720) T protein:vir:35 603 MVAQMIQQAQQPNAEL 618 (720) T ss_pred HHHHHHHHHHhHhHHH Confidence 000 0 00000 No 128 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=98.63 E-value=1.7e-07 Score=57.71 Aligned_cols=491 Identities=9% Similarity=-0.001 Sum_probs=203.8 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHH-HHHhcCChhhe--EeeecCC-cccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLY-EDMYLTNTSDY--QVILRGG-DEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~-~~~y~~~~~~~--~~i~~g~-d~~~~~~~~~p~~~k~v~~ 76 (527) |.=..++ -....+.++.- +....-..|-++..-+ -+||.|++|+= ..+|+-. -+-++.++-++-.+.+|+. T Consensus 1 ma~~~~~--~~~~~~~r~~~---~~~~~~~~r~~~~~d~~f~~y~G~Qw~~~~~~~l~~~~q~~~rP~~~~N~i~~~i~~ 75 (708) T protein:vir:17 1 MAETLEK--KHERIMLRFDR---AYSPQQEVREKCIEATRFARVPGGQWEGATAAGTKLDEQFEKYPKFEINKVATELNR 75 (708) T ss_pred CchhHHH--HHHHHHHHHHH---HHhhhHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhhhhhcCCCceEEcchHHHHHH Confidence 4433332 11111221111 1111111111111122 26899987651 2233211 1112456777889999999 Q ss_pred hhhhhccCcc---ccccCc--chhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEec------CCCCCccc Q lcl|Aclame:pro 77 KMRFLGQGLK---WEFSKK--DAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGD------DEKDEGSR 141 (527) Q Consensus 77 ~~~~Lg~~~~---~~i~~~--~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d------~~k~~~~r 141 (527) ++++=-.+.. +.+..+ ++++ ...++.+.+.++.....-.+-..+++-|=|||.|.-| |.... .+ T Consensus 76 v~g~e~~nr~d~~v~p~~~~~d~~~Ae~l~~l~~~~~~~~~~~~~~s~Af~~~i~~G~G~~~~~~d~~~e~d~~~~~-~~ 154 (708) T protein:vir:17 76 IIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDR-QR 154 (708) T ss_pred HHhhHhhCCcceEEecCCCcchHHHHHHHHHHHHHHHHhcCchhHHhHHHHHhhhcccceeeeeecccccCCCCCCc-cc Confidence 9888743331 123322 2333 3444667777778888888889999999999988543 12221 23 Q ss_pred eEEEEE-cc-ceEEEEecCC-------CCCceEEEEEEEeeeCCCCcc---------------------------ceeee Q lcl|Aclame:pro 142 LSLHEV-DP-STYFPYEDPR-------YPGQVLGVYLVDEYPHPDSEK---------------------------KNEKC 185 (527) Q Consensus 142 ~~i~~v-dP-~~~fp~~d~d-------~~~~v~~vh~a~~~~~pd~~~---------------------------~~~k~ 185 (527) |.|+.+ +| ..+| +||+ +.+.+.+. +|-+++.-+ +...+ T Consensus 155 i~i~~~~~~~~~v~--~Dp~a~~~D~sDar~~~~~----~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~~d~vrv~ 228 (708) T protein:vir:17 155 IAIEPIYDPSRSVW--FDPDAKKYDKSDALWAFCM----YSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFDADVIYIA 228 (708) T ss_pred cceEeeccchhhee--cCccccccChhhhhhhhhh----ccCCHHHHHHhCccccchhhhhhhhccccccccCCCeEEEE Confidence 434333 34 3444 2222 22222222 122222110 11111 Q ss_pred ee-eeeeeeeecCCccccCCccceeeec--------ccccccccccccccccccceee--eccCcc-cccccccccccce Q lcl|Aclame:pro 186 AR-VQKYMKTLDDDGKPVPGGAIKYTEE--------LYEPGKWDDRPESPLEPDDIKK--LSTLTE-EEPLPEQITTLPV 253 (527) Q Consensus 186 ~r-r~~~~~~~~~~g~p~~~g~i~~~~~--------~~~~g~wd~~~~~~~~~~~~~~--~~~~~~-e~~l~~pi~~iPV 253 (527) .+ .+.+++...-....+.+|.+..-.. ....+++.-....+.....+.. ...... +.+-|-|.+++|| T Consensus 229 e~~~r~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~p~~~fP~ 308 (708) T protein:vir:17 229 KYYEVRKESVDVISYRHPITGEIATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEHIPL 308 (708) T ss_pred EEEEEeeeeeEEEEEecCccCceeeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCCCCCccce Confidence 10 0011000000000011222211000 0001111100000011111111 112222 3556788899999 Q ss_pred EeeCCCCC--CCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceE--Eec---cCCC-----cCCCCcccceecCC Q lcl|Aclame:pro 254 FHFRGHPI--MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY--ATD---SAPP-----RDSRGNMVPWTISP 321 (527) Q Consensus 254 V~~pN~~~--~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~--~~~---g~~~-----~d~~G~~~p~~v~p 321 (527) |.|-.... ++...-..-+.+++..++.+|+.+|.+..++..++.-++ ..+ |... .+.+.-..++.--+ T Consensus 309 vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (708) T protein:vir:17 309 IPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLREVR 388 (708) T ss_pred EEEecccccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhhhcccchhhhhhhhccC Confidence 98865533 444422355778999999999999999998887765432 222 2211 01111001111111 Q ss_pred ---CeeEe-cCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHh-ccHHHHHHHHH Q lcl|Aclame:pro 322 ---LGMVE-HGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKL-SAILSSCAEQE 396 (527) Q Consensus 322 ---g~~~e-l~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~-~PLlakv~~kr 396 (527) |.+.. -...+++. ...-..++.+-++.....|.+++++-...+|. .|+ .||+|+...- +-..+...-.. T Consensus 389 ~~~g~v~~~a~~~~~~~---~~~~~~~~~~llq~~~~~i~~~tGi~d~~~G~--~sn-~SG~Ai~~rq~qg~~~~~~~~D 462 (708) T protein:vir:17 389 DKYGNIIAGATPAGYTQ---PAVMNQALAALLQQTSADIQEVTGGSQAMQQM--PSN-IAQETVNNLMNRADMASFIYLD 462 (708) T ss_pred CcccccccccCCcccCC---CccccHHHHHHHHHHHHHHHHhcCCChHHccC--ccc-hHHHHHHHHHHHHHHHHHHHHH Confidence 21111 01123333 11223456777888888999999999999994 344 5999998432 22221111000 Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh--hhc-ccccc-c---------------------------ceeEEEEeCCCCCCCHH Q lcl|Aclame:pro 397 LELKSVLKQFFYNLVTQWLPAYE--GVG-IDDAD-K---------------------------KLTVTITFRDPKPVNNE 445 (527) Q Consensus 397 l~~~~~~~q~~~~li~~~L~~~e--~v~-~~~~~-~---------------------------~~~v~v~w~d~lP~D~~ 445 (527) .+..+..++.+.++..+-.-|. .+. ..+.+ . .+-|.|.=++..|+-++ T Consensus 463 -nl~~~~~~~g~~lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v~~~p~~~t~r~ 541 (708) T protein:vir:17 463 -NMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRD 541 (708) T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEEecccCchhHHH Confidence 1112222333333332222221 111 11100 0 11123333445555555 Q ss_pred HHHHHHHHHHhcCCcc---HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 446 KRFAQLLELWEAGLIP---AKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 446 ~~i~~~v~l~~aGlls---~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) +-.+.++.+.+..... ..-.+-.|.+.+. .+- .+++.|++.+.. ...++ +.|+....++. T Consensus 542 ~~~~~l~qll~~~~~~~~~~~~~~~l~l~~~D--~p~--~~ei~e~ir~~~----~~~~~---------~~~~~~e~~q~ 604 (708) T protein:vir:17 542 ATVSVLTNVLSSMLPADPMRPAIQGIILDNID--GEG--LDDFKEYNRNQL----LISGI---------AKPRNEKEQQI 604 (708) T ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHhcC--CCC--hHHHHHHHHHHh----hcccc---------ccCcchhhHHH Confidence 6666666665554432 1222333344442 111 223444443321 01111 11111111111 Q ss_pred CCCCC Q lcl|Aclame:pro 523 NGQPL 527 (527) Q Consensus 523 ~~~~~ 527 (527) ..+.. T Consensus 605 ~~q~q 609 (708) T protein:vir:17 605 VQQAQ 609 (708) T ss_pred HHHHH Confidence 00000 No 129 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=98.63 E-value=1.7e-07 Score=57.64 Aligned_cols=500 Identities=12% Similarity=0.077 Sum_probs=194.0 Q ss_pred CCCCh--------hhh--h-hhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhhe----Eeeec--CCccc Q lcl|Aclame:pro 1 MGQDK--------RQY--G-STQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDY----QVILR--GGDEG 60 (527) Q Consensus 1 m~~~~--------~qy--~-~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~----~~i~~--g~d~~ 60 (527) ||--. ++- + .++..++.+..+ ..+| -.+++.|-+||+...+-. ....| |.+.. T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~R~~~e~~W~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (641) T protein:vir:94 5 MPTPIIEDKESAKRKLSTDRIGGVVISKWQES-------RDKRNTVENNWDETYELYRASAIDRQNTRARNFQTTGADDA 77 (641) T ss_pred CCcccccCCcchhhcCCchhHHHHHHHHHHHH-------HHhhcchHHHHHHHHHHhhcchhhhhhcccccccccccchh Confidence 33211 000 0 111112222221 1111 122345555554432211 11111 22111 Q ss_pred c-cccccCCchhHHHHhhhhhhccCc----ccc---c-cCcchhH----HHHHHHHHHhcCchhhHHHHhHhhhhcccEE Q lcl|Aclame:pro 61 D-QRPIYVPNGEKLIEAKMRFLGQGL----KWE---F-SKKDAKV----DDAIRVLFDRENWEQKFESLKRWTEIRGDYV 127 (527) Q Consensus 61 ~-~~~~~~p~~~k~v~~~~~~Lg~~~----~~~---i-~~~~~~v----~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav 127 (527) + +..++.|.+.-.+++.++-|+-++ .|+ + +.++++. ++.++.-+.++++..-+.+.-++++..|-|+ T Consensus 78 ~~r~ki~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~~~ed~~~A~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~g~~i 157 (641) T protein:vir:94 78 DWRHRINTGHTFEVVETLVAYFKGATFPSDDWFDLKGMVPELADAARVVKQLTKTKLEAASIRDIFETYVRNLVLYGVST 157 (641) T ss_pred cccccccchhHHHHHHHHhhHHhhhhcCCCceEEEecCCCChHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhhcCceE Confidence 1 224677777778888777775332 122 2 2233332 2333433344556666677889999999999 Q ss_pred EEEEecCCCCCc------------------------cceEEEEEccceEEEEecCC-CCCceEEEEEEEeeeCCCCccce Q lcl|Aclame:pro 128 LLLIGDDEKDEG------------------------SRLSLHEVDPSTYFPYEDPR-YPGQVLGVYLVDEYPHPDSEKKN 182 (527) Q Consensus 128 ~~i~~d~~k~~~------------------------~r~~i~~vdP~~~fp~~d~d-~~~~v~~vh~a~~~~~pd~~~~~ 182 (527) .+++|+....+. +.+.++.++|..+|.--.-+ +...++++.. +.. .... T Consensus 158 v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~~dps~~~~~~~f~~~r~---t~~---t~~~ 231 (641) T protein:vir:94 158 YRLGWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVWLDTSGGKNTGTFVRLRH---TRE---ELHE 231 (641) T ss_pred EEeehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhheeecCCCCcccccceehhh---hHH---HHHH Confidence 999998431100 12334445555443310000 0001111100 000 0000 Q ss_pred ee---------ee--eeeeeeeeecCCccccCC----ccceee-ecccccccccccccccccccceeeeccCccc-cccc Q lcl|Aclame:pro 183 EK---------CA--RVQKYMKTLDDDGKPVPG----GAIKYT-EELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLP 245 (527) Q Consensus 183 ~k---------~~--rr~~~~~~~~~~g~p~~~----g~i~~~-~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~ 245 (527) ++ +. .+..|. ..+.+-... ..-.++ .++| |+|+... .....+.....+.++ ...- T Consensus 232 l~~eg~~~~d~v~~~~~~~~~---~~~~d~~~d~~~~~~~~~~~~e~~--gd~~~d~---~~~~~~~~~~~g~~il~~~~ 303 (641) T protein:vir:94 232 LVTSGYYDLDLTQVEQYVDYK---FADPDTPKDVNGTDTSGWDIIEYY--GPLLVEG---VQFWCVHAVFYGKQLIRLSD 303 (641) T ss_pred HHhcCCCChhhcchhhccccc---ccccccccccccccccccceeeee--eeeccCC---CceeeEEEEEeCCEEeeccc Confidence 00 00 000000 000000000 000000 0122 2333222 111223322233332 2222 Q ss_pred cc-ccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCee Q lcl|Aclame:pro 246 EQ-ITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGM 324 (527) Q Consensus 246 ~p-i~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~ 324 (527) |+ .+..|++.++=.+.+++.||.|-..++++.+..||+..-.....+..+.+|++.... |+.-++..+..+||.+ T Consensus 304 ~~~~d~~Pf~~~r~~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~----~~~~~~~~l~~~PG~i 379 (641) T protein:vir:94 304 SKYWCGSPFVTTTLLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVE----DGILKREDVKAKPGAV 379 (641) T ss_pred ccccCcCCeEEecceecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecc----ccccccceeeccCCcc Confidence 33 356799999999999999999999999999999999999999999999999764411 2222334477889999 Q ss_pred EecCCCCceEEec-cccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccc--cHHHHHHHhccHHHHHHHHHHHHH- Q lcl|Aclame:pro 325 VEHGQNNKIYRVN-GVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAE--SGIALDLKLSAILSSCAEQELELK- 400 (527) Q Consensus 325 ~el~~~~k~~~ld-~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~--SG~ALql~~~PLlakv~~krl~~~- 400 (527) |..+..+.+..+. +.++......-++.+...+...-.+.....| .++.+.+ .-..+...++-.-.+....--.|. T Consensus 380 i~~~~~~~v~pl~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~TAtEV~~~~~e~~~~l~~i~r~l~~ 458 (641) T protein:vir:94 380 FKVAQHGSLQPIDMGRQDFVVTYQEAQVQESSVYRNTSTGPLIGN-AAPRGGERVTAAEIQGVRDAGGNRLSSVHTHIED 458 (641) T ss_pred eeeCCCCcceeecCCccccchhHHHHHHHHHHHHHhhhhhhhhcc-cccccchhccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9888777766653 2334444445556665565554444433222 2221111 111122211111111110000111 Q ss_pred HHHHHHHHHHHHHHHhhhhh--------h-ccccc---ccceeEEEEeCCCCCCCHHH------HHHHHHHHHhc-C--- Q lcl|Aclame:pro 401 SVLKQFFYNLVTQWLPAYEG--------V-GIDDA---DKKLTVTITFRDPKPVNNEK------RFAQLLELWEA-G--- 458 (527) Q Consensus 401 ~~~~q~~~~li~~~L~~~e~--------v-~~~~~---~~~~~v~v~w~d~lP~D~~~------~i~~~v~l~~a-G--- 458 (527) ..+..+++.++.++...+.. . ...++ ..+......+. ..|....+ -++..+.+.+. | T Consensus 459 e~l~pll~~~~~~~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L~~~~~-iv~l~~~q~~~~~~~i~~l~~~~~~~a~~P 537 (641) T protein:vir:94 459 SSTLPLLNKVFSLLQQFYVTPETIRMYVPEEQMDGFFEVSPEYLHYPYK-FLALGANYVVERERMVTDLLQLLDISGRVP 537 (641) T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhchhhhcccCCCCCccceeeeee-EeecchhHHHHHHHHHHHHHHHHHHhhcCh Confidence 12222332222211111110 0 00000 01111111111 13455333 23333333322 1 Q ss_pred ----CccHHHHHHHHHHhcCCCCchHHHHHHH----HHHHHHHHHHHHh-------cCcccccc-----------c-ccC Q lcl|Aclame:pro 459 ----LIPAKKLTEELSKIMGFELTEEDFRQAT----EDKKTQGIAQAEA-------ADPFGAQM-----------A-AEQ 511 (527) Q Consensus 459 ----lls~~ta~~~L~~~g~~~~~e~~~~~~~----e~~a~~a~~~~aa-------~d~~g~~~-----------~-~d~ 511 (527) .+-...+++.+.+++|.+.|..-++... .+...+++.++++ ++..-+.+ + +=- T Consensus 538 ~v~d~~d~~~~~~~~~~~~g~~~p~~~ir~~~~~~~~~~~~~~~~q~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~~~~ 617 (641) T protein:vir:94 538 QIGQSLDYALILEDLLRQMRFTDPMRYIKKAEAPPAAPPIAPAEPGALPPEMMNSVGGGLNDQAIAGMTPEDVSDLASRI 617 (641) T ss_pred hhhhcCCHHHHHHHHHHHhCCCCchhhccCccCchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHhh Confidence 1222334555566666554433322211 1111111111111 01000000 0 000 Q ss_pred CCCccc--------ccccCCCCCC Q lcl|Aclame:pro 512 GIPDEE--------DDQALNGQPL 527 (527) Q Consensus 512 g~~d~~--------~~~~~~~~~~ 527 (527) |.+++. .-.+-..+.| T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~ 641 (641) T protein:vir:94 618 GIDTSDVAPEAMAAATQQITSGAL 641 (641) T ss_pred cCCchhhhHHHHhcccccccccCC Confidence 111110 0000001111 No 130 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=98.62 E-value=9.4e-08 Score=59.11 Aligned_cols=422 Identities=16% Similarity=0.129 Sum_probs=196.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHH-HHHHHHhcC--ChhheEeeecCCccccc---cccc------CC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASY-RLYEDMYLT--NTSDYQVILRGGDEGDQ---RPIY------VP 68 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY-~~~~~~y~~--~~~~~~~i~~g~d~~~~---~~~~------~p 68 (527) ||..-+||+.+.+. . . +......++..- +.+..|-.. ++..|.-|||..+..+. ...| .+ T Consensus 1 ~~~~~d~~g~p~~~--~--~----~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~ 72 (528) T protein:vir:10 1 MAAIVDIYGNPLRT--Q--Q----LRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDA 72 (528) T ss_pred CCeeECCCCCcccc--c--c----ccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhCh Confidence 99999999876542 1 1 111111222221 111111111 13344444442222111 1111 11 Q ss_pred chhHHHHhhhhhhccCccccccCcc------hhHHHHHHHHHHh-cCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKKD------AKVDDAIRVLFDR-ENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~~------~~v~~~lr~w~~~-e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) .-.-.+++..+-+ .+.+|.|..+. .+..++++.|+.+ .+|+..+...- +|+..|-+|+-|.|...- .+ T Consensus 73 ~i~s~l~~Rk~av-~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~l-da~~~G~s~~Ei~w~~~~---g~ 147 (528) T protein:vir:10 73 HLFAEMSKRKRAV-LGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCM-DGVGHGYSAIELDWSLQG---RE 147 (528) T ss_pred HHHHHHHHHHHHH-hcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHH-hhhhhcceeEEEEEeecC---Cc Confidence 1223455533333 45588875432 2345667777743 34555444444 477899999999998632 23 Q ss_pred eEEEEE---ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccc Q lcl|Aclame:pro 142 LSLHEV---DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGK 218 (527) Q Consensus 142 ~~i~~v---dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~ 218 (527) ..++.+ +|+ +|-+ ++++.. ..+ .| . T Consensus 148 ~~~~~~~~r~~~-~f~~-------------------~~~~~~-~l~--~~-------~---------------------- 175 (528) T protein:vir:10 148 WLPQAFDHRPQS-WFQL-------------------NPDDQD-ELR--LR-------D---------------------- 175 (528) T ss_pred eeEEEeeeeccc-ceee-------------------ccCCCc-EEe--cc-------C---------------------- Confidence 322111 111 1100 111100 000 00 0 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) ....-.+|| |.+||-..| .+..+.++|.+-|..+.-..--=|..+.+....++..|.| T Consensus 176 ------------------~~~~g~~l~-~~k~iv~~~---~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P 233 (528) T protein:vir:10 176 ------------------NSIAGEVLQ-PFGWIMHKP---RSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLP 233 (528) T ss_pred ------------------CCCCceeec-CCCeEEEee---cCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCC Confidence 000011233 445554433 3356888999999998888777788999999999999999 Q ss_pred eEEec-cCCCcCCCCc-cc--ceecCCCeeEecCCCCceEEeccc-cChHHHHHHHHHHHHHHHHhhcCchhhccccccc Q lcl|Aclame:pro 299 FYATD-SAPPRDSRGN-MV--PWTISPLGMVEHGQNNKIYRVNGV-ASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAA 373 (527) Q Consensus 299 ~~~~~-g~~~~d~~G~-~~--p~~v~pg~~~el~~~~k~~~ld~~-~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s 373 (527) +.... .....+++-+ .. -..++-....=+|.+..+..+... .+...|.+.+++..+.|+.+- +|.+-.| T Consensus 234 ~~igky~~~a~~~ek~~L~~al~~i~~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i------LGqtlTs 307 (528) T protein:vir:10 234 IRLGKYPPGTPDEEKVTLLRAVTGLGHAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAI------LGGTLTS 307 (528) T ss_pred eEEEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHH------hhhhhhc Confidence 76643 2211222111 11 122344444448888888888843 355668999999999988753 4433222 Q ss_pred c----cccHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccceeEEEEeCCCCCCCHHHH Q lcl|Aclame:pro 374 V----AESGIALD-LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA-DKKLTVTITFRDPKPVNNEKR 447 (527) Q Consensus 374 ~----a~SG~ALq-l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~-~~~~~v~v~w~d~lP~D~~~~ 447 (527) . .-|..|+- ....-....++.-...+...+ ++.++..++ .+-+... .....+.++|...-|.|.++. T Consensus 308 ~~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tl---n~~li~~l~----~~N~~~~~~~~~~p~~~~~~~e~eDl~~~ 380 (528) T protein:vir:10 308 QTSESGGGAYALGQVHNEVRHDLLAADARQLAATL---SRDLLWPLL----VLNRSGNLDARRAPRLVFDLKDRADLAAM 380 (528) T ss_pred cccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HhCCCCCCCccccceEEecCCCcccHHHH Confidence 1 11233431 222211111111111122222 122333322 2333221 234457889999999999999 Q ss_pred HHHHHHHHhcCC-ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-HhcCcccccccc--cCCCCccc-ccccC Q lcl|Aclame:pro 448 FAQLLELWEAGL-IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQA-EAADPFGAQMAA--EQGIPDEE-DDQAL 522 (527) Q Consensus 448 i~~~v~l~~aGl-ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~-aa~d~~g~~~~~--d~g~~d~~-~~~~~ 522 (527) ++.+.+|...|+ ++.+...+++ |.+.+.+... ++........+.. +...+..+.... ....++.. -|+.. T Consensus 381 a~~~~~L~~~G~~i~~~~i~e~~----gip~p~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 455 (528) T protein:vir:10 381 ATSLPPLVKLGVQVPVNWVQEQL----GIPLPANGEA-VLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQEALDQVL 455 (528) T ss_pred HHHHHHHHhCCCCCCHHHHHHHh----CCCCCCCCcc-cccCCCcccccccCcccccccccccccccccccccchHHHHH Confidence 999999999999 8888777766 4444433221 1111110000000 001111111110 00011100 00000 Q ss_pred CCC--------------CC Q lcl|Aclame:pro 523 NGQ--------------PL 527 (527) Q Consensus 523 ~~~--------------~~ 527 (527) -.. |+ T Consensus 456 ~~~~~~~~~~~~~~~l~~i 474 (528) T protein:vir:10 456 ASLPAQDMQNQADSLVAPL 474 (528) T ss_pred HHHHHHHHHHHHHHHHHHH Confidence 000 00 No 131 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=98.59 E-value=2.2e-07 Score=57.07 Aligned_cols=472 Identities=13% Similarity=0.081 Sum_probs=227.8 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCccc-ccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDEG-DQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~~-~~~~~~~p~~~k~v~~ 76 (527) |.= .|.=-.+....+.+.. .-.+| +.+++.|.+|..-+-... .|.+.. ....++.+-|.+.+++ T Consensus 1 m~~-~~~~~~~~~~~~r~~~-------l~~~R~~~e~~w~e~~~~~lP~~~~~----~~~~~~~~~~~~~dst~~~a~~~ 68 (536) T protein:vir:10 1 MAE-KRTGLAEDGAKSVYER-------LKNDRAPYETRAQNCAQYTIPSLFPK----DSDNASTDYQTPWQAVGARGLNN 68 (536) T ss_pred Ccc-hhhchhHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHhcccccCC----CCCcccccccccccccHHHHHHH Confidence 544 2221112222222221 11123 667888888876652111 111111 1235788889999999 Q ss_pred hhhhhccCc----ccc-ccCcc-------------hhH-------HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 77 KMRFLGQGL----KWE-FSKKD-------------AKV-------DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 77 ~~~~Lg~~~----~~~-i~~~~-------------~~v-------~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) .++.|+.+. +|| ++..+ ++| .+.+..-+.+.|+...+-++=+..++-|-|+.++- T Consensus 69 Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~ 148 (536) T protein:vir:10 69 LASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLP 148 (536) T ss_pred HHHHHHhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEe Confidence 888885432 342 11111 123 33445566688999999999999988899997765 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCccce Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIK 208 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~ 208 (527) =++.++ . ..++.+.-+.|+-..|++ |+|..|+.-..+. .++. ....+.+... ...| ...+. T Consensus 149 e~~~~~--~-~~~~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~~l~~~--fg~~~~~~~~-------~~~~--~~~v~ 212 (536) T protein:vir:10 149 EPEGSN--Y-NPMKLYRLSSYVVQRDAF--GNVLQMVTRDQIAFGALPED--IRKAVEGQGG-------EKKA--DETID 212 (536) T ss_pred eCCCCc--e-eeEEEEEcCeEEEeeCCC--CCeeEEeeeeeccHHHHHHh--hhhhhccccc-------ccCc--ccceE Confidence 443321 2 224556667776666644 5677775321111 0000 0000000000 0000 01111 Q ss_pred eeecccccccccccccccccccceeeeccCccc-ccc-cccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHH Q lcl|Aclame:pro 209 YTEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPL-PEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMT 286 (527) Q Consensus 209 ~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l-~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~ls 286 (527) . ++...++++. .++.. +. ..++.++ ... -.|+...|++.++=...++++||+|=.++.++-+..||+.-- T Consensus 213 v----~~~V~~~~~~-~~~~~--~~-e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~ 284 (536) T protein:vir:10 213 V----YTHIYLDEAS-GEYLR--YE-EVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQE 284 (536) T ss_pred E----EEEEEEecCC-CcEEE--EE-eecCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHH Confidence 1 1111111111 11110 11 1122222 112 235667999999999899999999999999999999998877 Q ss_pred HHHHHHHHhCCceE-E-eccCCCcCCCCcccc-eecCCCeeEecCCC-CceEEeccccChHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 287 DEDLIMVFGGLGFY-A-TDSAPPRDSRGNMVP-WTISPLGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGI 362 (527) Q Consensus 287 d~~~i~~~~g~P~~-~-~~g~~~~d~~G~~~p-~~v~pg~~~el~~~-~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~t 362 (527) ..-..+.....|++ + .+|. .++.. .+-++|.++.-..+ -.+..+...+++....+-++.+..+|...=-. T Consensus 285 ~~l~~~~~a~~~~~lv~p~g~------~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~ 358 (536) T protein:vir:10 285 AIVKMSMISSKVIGLVNPAGI------TQPRRLTKAQTGDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFML 358 (536) T ss_pred HHHHHHHHHhcCCcccCcccc------cchhhhccCCCcceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhh Confidence 76666666666542 2 2222 12221 12344555432222 12334444456777777777777777553211 Q ss_pred chhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc------cceeEEEEe Q lcl|Aclame:pro 363 PDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD------KKLTVTITF 436 (527) Q Consensus 363 P~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~------~~~~v~v~w 436 (527) - .+...|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.++...+. .-+.+.++ T Consensus 359 ~--~l~~~~~~r~---TAtE-----V~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~v- 427 (536) T protein:vir:10 359 N--SAVQRTGERV---TAEE-----IRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTIS- 427 (536) T ss_pred h--hcccCCCCCc---cHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEE- Confidence 1 1111122111 1333 3467888888999999988887776555553333222111 11123333 Q ss_pred CCCCCCCHHHHHHHHHHHHh--c-------C-CccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHH--H-H Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWE--A-------G-LIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQ--A-E 498 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~--a-------G-lls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~--~-a 498 (527) ....+..+.+.++.++...+ + . -|-.+.+++.+.++-|.+| +.++++++-+..+.++..+ + + T Consensus 428 s~l~~l~r~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~ 507 (536) T protein:vir:10 428 TGLEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAA 507 (536) T ss_pred ecHHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHH Confidence 12233444455555444332 1 2 2677888888888877644 6666666533222111111 1 1 Q ss_pred hcCcccccccccCCCCc-ccccccCCCCCC Q lcl|Aclame:pro 499 AADPFGAQMAAEQGIPD-EEDDQALNGQPL 527 (527) Q Consensus 499 a~d~~g~~~~~d~g~~d-~~~~~~~~~~~~ 527 (527) ++-.+...+. .|-++ ++--++.|-+|- T Consensus 508 ~~~~~~~~~~--~~~~~~~~~~~~~g~~~~ 535 (536) T protein:vir:10 508 LAQGMAAQAT--ASPEAMAAAADSVGLQPG 535 (536) T ss_pred HHHHHHHHHh--cCchhHHhhhhccccCCC Confidence 1222221111 12221 111122222222 No 132 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=98.59 E-value=2.4e-07 Score=56.92 Aligned_cols=470 Identities=10% Similarity=0.096 Sum_probs=238.6 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~ 77 (527) |.=+++-=..+..+.+.+.. .-.+| +.+++.|.+|...+-.... .-+|+. ....++.+-|.+.+++. T Consensus 1 m~~~~~~~~~~~~~~~r~~~-------l~~~R~~~e~~w~e~~~~~lP~~~~~~-~~~~~~--~~~~~~dst~~~a~~~L 70 (532) T protein:vir:99 1 MAEVEKTGFAADGAAAAYNR-------LKNDRGAYETRAEDCATYTIPSVFPSA-TADGST--SYTTPWQSIGARGLNNL 70 (532) T ss_pred CcchhhccccHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHhhhcccCCC-CCcchh--hccccccchHHHHHHHH Confidence 76666432223333333332 11233 6678888888876521100 001221 22457888899999998 Q ss_pred hhhhcc-----Ccccc-ccCcc-------------hhHHHHH-------HHHHHhcCchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 78 MRFLGQ-----GLKWE-FSKKD-------------AKVDDAI-------RVLFDRENWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 78 ~~~Lg~-----~~~~~-i~~~~-------------~~v~~~l-------r~w~~~e~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) ++.|+. +.+|| ++..+ ++|+++| ..-+.+.|+...+-++=+..++-|-|+.++- T Consensus 71 Aa~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~ 150 (532) T protein:vir:99 71 ASKLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAGNVLLYIP 150 (532) T ss_pred HHHHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEec Confidence 888853 23554 22221 2244333 3456678999999999999898999999887 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEee---eCCCCccceeeeeeeeeeeeeecCCccccCCccce Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEY---PHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIK 208 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~---~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~ 208 (527) .++... ++...++.+.-+.|.-..|.. |+|..|..-..+ ..|++-. +...+..+ ++.| ...+. T Consensus 151 ~~~~~~-~~~~~f~~~pl~~y~v~~d~~--G~v~~ivrr~~~~~~~l~e~~~---~~~~~~~~------~~~p--~~~v~ 216 (532) T protein:vir:99 151 STEQVE-GQSNAPKLYKLHNFVVERDAY--DNVLQIVTEDKIARAALPEDVR---KSLEDAQG------DQNP--SEEVT 216 (532) T ss_pred cccccc-CcccceEEEEcCeEEEeeCCC--CCeeeEeeeeeecHHhcChHHH---HHhhcccc------ccCC--CcceE Confidence 765432 334556666667766666554 566655422111 1121110 00111111 1111 11111 Q ss_pred eeecccccccccccccccccccceeeeccCccc-ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHH Q lcl|Aclame:pro 209 YTEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTD 287 (527) Q Consensus 209 ~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd 287 (527) . ++...|++.. .++. -++-+.+.... ..--.|+...|++.++=...++++||+|=.++.++-+..||+.--. T Consensus 217 v----~~~v~~~~~~-~~~~--~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~ 289 (532) T protein:vir:99 217 I----YTHVYRDPEA-MVFR--SYQEIDGEIVAGTEGEYPLDSCPWIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYEA 289 (532) T ss_pred E----EEEEEecCCC-CeeE--EEEeecCceecccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHH Confidence 1 1111122110 0110 01111111111 1112245668999999988999999999999999999999988777 Q ss_pred HHHHHHHhCCceEEeccCCCcCCCCcccce-ecCCCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcCchh Q lcl|Aclame:pro 288 EDLIMVFGGLGFYATDSAPPRDSRGNMVPW-TISPLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDI 365 (527) Q Consensus 288 ~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~-~v~pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~v 365 (527) .-..+...-.|++-. .| |+..++..+ +-++|.++.-..++ .+..+...+++....+-++.+..+|...==.- T Consensus 290 ~l~~~~~a~~~~~lv---~p-~g~~~~~~~~~~~~g~~v~g~~~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~-- 363 (532) T protein:vir:99 290 IVKMSMISSKVLFFV---NP-NGVTQIRRVAKANTGDFVAGRKQDVEVFQLEKYNDFQVAKATADDIEKRLSYAFMLN-- 363 (532) T ss_pred HHHHHHHHcCCCcee---cc-ccccchhhhccCCCcceecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhh-- Confidence 777777777776332 11 122222222 23455555433322 23444444577777788888877776522100 Q ss_pred hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-cce-----eEE-EEeCC Q lcl|Aclame:pro 366 AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-KKL-----TVT-ITFRD 438 (527) Q Consensus 366 a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-~~~-----~v~-v~w~d 438 (527) .+...|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.++...+. +++ .+. ++ . T Consensus 364 ~~~~~d~~r~---TAtE-----V~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~iv~--~ 433 (532) T protein:vir:99 364 SAVQRGGDRV---TAEE-----IRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQATSKIPNLPKEAVEPAIAT--G 433 (532) T ss_pred hcccCCCCcc---cHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhcccceee--c Confidence 0111121111 2333 3467888888899999888877776555443222211111 111 111 22 2 Q ss_pred CCCCCHHHHHHHHHHHHh---------cCCccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHh--cCc Q lcl|Aclame:pro 439 PKPVNNEKRFAQLLELWE---------AGLIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQAEA--ADP 502 (527) Q Consensus 439 ~lP~D~~~~i~~~v~l~~---------aGlls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~~aa--~d~ 502 (527) ..|-.+.+.++.++...+ .-.+-...+++.+.++.|.++ +.++.+++.+....++....|+ +.. T Consensus 434 is~Laraq~~~~l~~~~~~laq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~~~a~~~~~~ 513 (532) T protein:vir:99 434 LEALGRGHDLNKLNVFIDYMIKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGMVTAGQQMGA 513 (532) T ss_pred chHHHHHHHHHHHHHHHHHHHhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 345556666665543322 123567788888888877644 5566666544333222211111 111 Q ss_pred ccccc----cccCCCCccc Q lcl|Aclame:pro 503 FGAQM----AAEQGIPDEE 517 (527) Q Consensus 503 ~g~~~----~~d~g~~d~~ 517 (527) .+..+ ++....+|.+ T Consensus 514 ~~~~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:99 514 AGGQAAAAMMQQQAGMPTQ 532 (532) T ss_pred HHHHhcchhHHhhcCCCCC Confidence 11111 1222222222 No 133 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=98.55 E-value=3e-07 Score=56.37 Aligned_cols=476 Identities=14% Similarity=0.073 Sum_probs=242.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCc-ccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGD-EGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d-~~~~~~~~~p~~~k~v~~~~~ 79 (527) |+-+++-==+....-+.+..+- ..=..-+.+++.|.+|..-+-- .-.+.. ......++.+-|...+++.++ T Consensus 1 m~~~~~~~~~~~~~k~r~~~l~----~~R~~~e~~w~e~~~~~lP~~~----~~~~~~~~~~~~~~~dst~~~a~~~Laa 72 (535) T protein:vir:15 1 MADSKRTGLGEDGAKATYDRLT----NDRRAYETRAENCAQYTIPSLF----PKESDNESTDYTTPWQAVGARGLNNLAS 72 (535) T ss_pred CCccchhccchHHHHHHHHHHH----HHhhHHHHHHHHHHHHhccccc----CCCCCcccccccccccccHHHHHHHHHH Confidence 8877752112222222222210 0001237888999999766511 001111 112345788889999999888 Q ss_pred hhccCc----ccc-ccCc-------------chhHH-------HHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecC Q lcl|Aclame:pro 80 FLGQGL----KWE-FSKK-------------DAKVD-------DAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDD 134 (527) Q Consensus 80 ~Lg~~~----~~~-i~~~-------------~~~v~-------~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~ 134 (527) .|+.+. +|| ++.. .++|+ +.+..-+.+.|+...+-++=+..++-|-|+.++-.|+ T Consensus 73 ~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~ 152 (535) T protein:vir:15 73 KLMLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEPE 152 (535) T ss_pred HHHHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecCC Confidence 885432 343 2211 12333 3344456789999999999999999999999998876 Q ss_pred CCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCccceeee Q lcl|Aclame:pro 135 EKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTE 211 (527) Q Consensus 135 ~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~ 211 (527) .+ -+.++.+.-+.|+-..|+. |+|..|+.-..+. .+++- .+...+..+.+ .| ...+.+ T Consensus 153 ~~----~~~f~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~~l~~~~---~~~~~~~~~~~------~~--~~~v~v-- 213 (535) T protein:vir:15 153 GS----YNPMKLYRLSSYVVQRDAY--GNVLQIVTRDQIAFGALPEDV---RSAVEKAGGEK------KM--DEMVDV-- 213 (535) T ss_pred CC----ceeeEEEEcCeeEEeeCCC--CCeeEEEEeEeecHHHHHHHH---hHhhhcccccc------CC--CCceeE-- Confidence 43 3345667667766666654 5666664322111 11100 00000001110 01 111111 Q ss_pred cccccccccccccccccccceeeeccCccc--ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHH Q lcl|Aclame:pro 212 ELYEPGKWDDRPESPLEPDDIKKLSTLTEE--EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDED 289 (527) Q Consensus 212 ~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e--~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~ 289 (527) ++...++.+. .++.. +..+ ++... ..--.|++..|++.++=...++++||+|=.++.++-+..||+.--... T Consensus 214 --~~~v~~~~~~-~~~~~--~~e~-~g~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 287 (535) T protein:vir:15 214 --YTHVYLDEES-GDYLK--YEEV-EDVEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIV 287 (535) T ss_pred --EEEEEEecCC-CcEEE--EEEe-eCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 1111122111 11111 1111 12111 112335667899999999899999999999999999999999999999 Q ss_pred HHHHHhCCceEEeccCCCcCCCCccccee-cCCCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhc Q lcl|Aclame:pro 290 LIMVFGGLGFYATDSAPPRDSRGNMVPWT-ISPLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAV 367 (527) Q Consensus 290 ~i~~~~g~P~~~~~g~~~~d~~G~~~p~~-v~pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~ 367 (527) ..+...-+|++-. ++ ++..++..+. -++|.++.-..++ .+..+...+++....+-++.+..+|...==.- .+ T Consensus 288 ~~~~~~~~p~~lv---~~-~g~~~~~~l~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~--~~ 361 (535) T protein:vir:15 288 KMSMISAKVIGLV---NP-AGITQPRRLTKAQTGDFVPGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLN--SA 361 (535) T ss_pred HHHHHHhcCceee---cc-cccccchhcccCCceeeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhh--hc Confidence 9999999987443 11 2223333322 3345555433332 34445555678888888888888886632100 11 Q ss_pred ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----ccceeEEEEeCCCCCCC Q lcl|Aclame:pro 368 GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA----DKKLTVTITFRDPKPVN 443 (527) Q Consensus 368 G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~----~~~~~v~v~w~d~lP~D 443 (527) +..|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.++...+ ...--+.+.+-.++.. T Consensus 362 ~~~~~~r~---TAtE-----V~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~yis~La~- 432 (535) T protein:vir:15 362 VQRTGERV---TAEE-----IRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATSQIPELPKEAVEPTISTGLEA- 432 (535) T ss_pred ccCCCccc---cHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccceeEEEecHHHH- Confidence 11122111 1333 346788888899999999888777655555333332221 1111244555455543 Q ss_pred HHHHHHHHHHHH------------hcC-CccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHhcCcccc Q lcl|Aclame:pro 444 NEKRFAQLLELW------------EAG-LIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQAEAADPFGA 505 (527) Q Consensus 444 ~~~~i~~~v~l~------------~aG-lls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~~aa~d~~g~ 505 (527) .+...++.++- +.. .|-.+.+++.+.++.|.++ +.++.++..+.... +..+..++...|. T Consensus 433 -aqr~~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~~~q~~~-~~~~~~~a~~~g~ 510 (535) T protein:vir:15 433 -IGRGQDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAA-QTGIENAAATGGA 510 (535) T ss_pred -HHHHHHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHH-HHHHHHHHHHHHh Confidence 22222222221 122 2677888888888887653 44454444322221 1122222222222 Q ss_pred ccccc-CCCCccc---ccccCCCCC Q lcl|Aclame:pro 506 QMAAE-QGIPDEE---DDQALNGQP 526 (527) Q Consensus 506 ~~~~d-~g~~d~~---~~~~~~~~~ 526 (527) ..++. ..+||.- .+..+-..- T Consensus 511 ~~~~~~~~~p~~~~~~~~~~g~~~~ 535 (535) T protein:vir:15 511 GVGALATSSPEAMQGAAAQAGLDAT 535 (535) T ss_pred hccchhccChHHHHHHHhccCCCCC Confidence 21110 1122111 111111111 No 134 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=98.53 E-value=3.4e-07 Score=56.06 Aligned_cols=404 Identities=12% Similarity=0.103 Sum_probs=183.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) -.|+-++- .--+|-.|+..-+.+.+..+.+.+. +.|.+++.--++| +.+.+.+++| T Consensus 48 ~~~~~~~~-~~~~~~~g~~~~~~~~~~~~l~~l~------~~~~~npiv~~~I-----------------~~~a~~ia~~ 103 (547) T protein:vir:63 48 VAYSQPVI-GSMSANPGFKTKPSIRNNQDLHGVL------KKFGGNIILNAII-----------------NTRSNQVSMY 103 (547) T ss_pred hhhhchhh-heeecccccccCCccCChhHHHHHH------HHhhcCHHHHHHH-----------------HHHHHHHhhh Confidence 11111110 1224456777777777777766542 2222221110000 1122333333 Q ss_pred h--------ccCccccccCcc-------hhHHHHHHHHHHhcCch---------hhHHHHhHhhhhcccEEEEEEecCCC Q lcl|Aclame:pro 81 L--------GQGLKWEFSKKD-------AKVDDAIRVLFDRENWE---------QKFESLKRWTEIRGDYVLLLIGDDEK 136 (527) Q Consensus 81 L--------g~~~~~~i~~~~-------~~v~~~lr~w~~~e~l~---------~k~~~~~r~a~~~GDav~~i~~d~~k 136 (527) . |+|+.+.+.... ..--..++.+..+.++. .-+....+..++-|-|++.+.+|. T Consensus 104 ~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~-- 181 (547) T protein:vir:63 104 CKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNR-- 181 (547) T ss_pred hhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEEECC-- Confidence 2 344444332211 11123455666555433 233445566777898888888874 Q ss_pred CCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccc Q lcl|Aclame:pro 137 DEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEP 216 (527) Q Consensus 137 ~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~ 216 (527) .|+-+.+..+||.++.+..+++.. .+++. +.|..... +.+..+ + T Consensus 182 -~G~~~~L~~l~p~~V~~~~~~~g~-------------~~~~~---------~~y~~~~~--------~~~~~~---~-- 225 (547) T protein:vir:63 182 -NQSMVRFVAKDPTTIFFATTADGK-------------IPDNG---------NRFVQVID--------QKIVAT---F-- 225 (547) T ss_pred -CCcEEEEEEecCceeEEEECCccc-------------cccCc---------eEEEEEcC--------CcEEEE---e-- Confidence 234556788999999888766521 11100 11211110 000000 0 Q ss_pred ccccccccccccccceeeeccCcccccccccccccceEeeCCCCCC---CCccCCccccchHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 217 GKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIM---NAMFGRSGLAGLESLIASVNQTMTDEDLIMV 293 (527) Q Consensus 217 g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~---~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~ 293 (527) +-+- |+|++..+.. ..++|.|-|+-+...+...+..-.-...... T Consensus 226 ------------------------------~~~e--iih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~ 273 (547) T protein:vir:63 226 ------------------------------NARE--MAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFS 273 (547) T ss_pred ------------------------------cccc--EEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 0001 5677644332 3567888877666655554333222222222 Q ss_pred HhCCce--EEeccCCCcCCC-Cc--cccee------cCCCee-EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 294 FGGLGF--YATDSAPPRDSR-GN--MVPWT------ISPLGM-VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKG 361 (527) Q Consensus 294 ~~g~P~--~~~~g~~~~d~~-G~--~~p~~------v~pg~~-~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~ 361 (527) -.+.|- +...+....+.. -+ ..-|. -+.|.+ +-++++-+|..+...+.-..|.+..+...+.|+..=+ T Consensus 274 Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afg 353 (547) T protein:vir:63 274 HGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVISALYG 353 (547) T ss_pred cCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhC Confidence 234564 333333222211 00 01111 123444 3234556899998877777799999999999999999 Q ss_pred Cchhhccccccccc---------ccHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc Q lcl|Aclame:pro 362 IPDIAVGVVDAAVA---------ESGI------ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA 426 (527) Q Consensus 362 tP~va~G~~d~s~a---------~SG~------ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~ 426 (527) +|.+-+|-.+.++. -|.+ .++-.+.|++.+ +++.+ -..+++.+ T Consensus 354 VPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~-----------ie~~l---n~~L~~~~-------- 411 (547) T protein:vir:63 354 IDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGF-----------IEDFI---NKHIVAEF-------- 411 (547) T ss_pred CCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH-----------HHHHH---Hhhccccc-------- Confidence 99999995433211 0111 122223333321 11111 11111111 Q ss_pred ccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHH---------HHH-HH--HHH Q lcl|Aclame:pro 427 DKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQAT---------EDK-KT--QGI 494 (527) Q Consensus 427 ~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~---------e~~-a~--~a~ 494 (527) ... ..+.|......+..+.. ++.++..+|+++.-++.+++ |.+|..+.-.... ... +. ..+ T Consensus 412 ~~~--~~~~f~~~~~~~~~~~~-~~~~~~~~g~lT~NE~R~~~----gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~ 484 (547) T protein:vir:63 412 GDK--YTFQFVGGDIKSELESV-KILAEKAKVAMTVNEVRKEL----NLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHE 484 (547) T ss_pred CCc--eEEEeeccccccHHHHH-HHHHHHhCCCcCHHHHHHHh----CCCCCCCCCceeecccccccccccccccCCccc Confidence 111 34557667676755443 46678899999999999877 4444221100000 000 00 000 Q ss_pred HHHHhcCcccc-cccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 495 AQAEAADPFGA-QMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 495 ~~~aa~d~~g~-~~~~d~g~~d~~~~~~~~~~~~ 527 (527) .+.+..+.... .+..+++.|+++.+++.+.... T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (547) T protein:vir:63 485 KQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDI 518 (547) T ss_pred cchhhccccccccCCCCCCCCCCCCCCcccCCCc Confidence 01111111111 1112223333333333332222 No 135 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=98.52 E-value=2.7e-07 Score=56.56 Aligned_cols=415 Identities=14% Similarity=0.071 Sum_probs=195.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHH-HHHHHHhc--CChhheEeeecCCccccccc---cc------CC Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASY-RLYEDMYL--TNTSDYQVILRGGDEGDQRP---IY------VP 68 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY-~~~~~~y~--~~~~~~~~i~~g~d~~~~~~---~~------~p 68 (527) |+..-+||+.+...=. + +.....++..- +.+..+=. =++..|+-|||.-+..+.++ .| .+ T Consensus 1 m~~~~d~~g~p~~~~~----~----~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~ 72 (512) T protein:vir:19 1 MGRILDISGQPFDFDD----E----MQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDT 72 (512) T ss_pred CcceeCCCCCcccccc----c----cccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhCh Confidence 9999999988765211 0 00111111111 01111000 01344444554322222111 11 11 Q ss_pred chhHHHHhhhhhhccCccccccCc---ch---hHHHHHHHHHHh-cCchhhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKK---DA---KVDDAIRVLFDR-ENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~---~~---~v~~~lr~w~~~-e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) --.-.+++..+-+ .+.+|.|.-+ ++ ++.++++.|+.. .+|+.-+...- +|+..|-+|+-|.|...- .. T Consensus 73 hi~s~l~~Rk~av-~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~---g~ 147 (512) T protein:vir:19 73 HLFSELSKRRLAI-QALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAG-DAILKGYSMQEIEWGWLG---KM 147 (512) T ss_pred HHHHHHHHHHHHH-hCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hhhhhcceeeeeEeeeeC---Cc Confidence 1223455533333 4568887532 22 355667777742 24554444444 588899999999997421 12 Q ss_pred eEE---EEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccc Q lcl|Aclame:pro 142 LSL---HEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGK 218 (527) Q Consensus 142 ~~i---~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~ 218 (527) ..+ ...+|+ +|-. ++++. ... .++ . T Consensus 148 ~~~~~~~~r~~~-~f~~-------------------~~~~~-~~l------r~~---~---------------------- 175 (512) T protein:vir:19 148 RVPVALHHRDPA-LFCA-------------------NPDNL-NEL------RLR---D---------------------- 175 (512) T ss_pred eeeeeeeeeccc-ccee-------------------ccCCC-cEE------Eec---C---------------------- Confidence 211 111111 1100 11100 000 000 0 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) ....-.+|| |.+||-.+|-+ .++.++|.+-+..+-...--=|..+.+....++..|.| T Consensus 176 ------------------~~~~G~~l~-~~k~i~~~~~~---~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P 233 (512) T protein:vir:19 176 ------------------ASYHGLELQ-PFGWFMHRAKS---RTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLP 233 (512) T ss_pred ------------------CCCCceeec-CCceEEEeccC---CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCC Confidence 000011233 55565444433 55889999999998888888889999999999999999 Q ss_pred eEEec-cCCCcCC-CCcc--cceecCCCeeEecCCCCceEEecccc-ChHHHHHHHHHHHHHHHHhhcCchhhccccccc Q lcl|Aclame:pro 299 FYATD-SAPPRDS-RGNM--VPWTISPLGMVEHGQNNKIYRVNGVA-SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAA 373 (527) Q Consensus 299 ~~~~~-g~~~~d~-~G~~--~p~~v~pg~~~el~~~~k~~~ld~~~-~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s 373 (527) ++... .....+. .-.. .-..++-....=+|.+..+..+..+. +-..|...+++..+.|+.+ -+|.+-.| T Consensus 234 ~~igky~~~a~~~ek~~L~~al~~~~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~------iLGqtlTs 307 (512) T protein:vir:19 234 MRVGKYPTGSTNREKATLMQAVMDIGRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKA------ILGGTLTT 307 (512) T ss_pred eeEEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHH------Hhhhhhcc Confidence 86542 2111121 1111 11224445555588888888888543 4455889999999999876 35555333 Q ss_pred cc-ccH-HHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccceeEEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 374 VA-ESG-IALD-LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA-DKKLTVTITFRDPKPVNNEKRFA 449 (527) Q Consensus 374 ~a-~SG-~ALq-l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~-~~~~~v~v~w~d~lP~D~~~~i~ 449 (527) .+ .+| .|+- ....-....++.-...+...+ ++.++..+ -.+-+... .....+.++|...-|.|.++.++ T Consensus 308 ~~g~~Gs~a~~~vh~ev~~di~~aDa~~i~~tl---n~~li~~l----~~~N~~~~~~~~~~p~~~f~~~e~eDl~~~a~ 380 (512) T protein:vir:19 308 EAGDKGARSLGEVHDEVRREIRNADVGQLARSI---NRDLIYPL----LALNSDSTIDINRLPGIVFDTSEAGDITALSD 380 (512) T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHhCCCCCCCccccceEEecCCChhhHHHHHH Confidence 22 122 4542 222211111211111122222 12333322 23333322 22345778999999999999888 Q ss_pred HHHHHHhcCC-ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 450 QLLELWEAGL-IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 450 ~~v~l~~aGl-ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) .+.+|. .|+ ++.+...+++ |.+-+.++.... .... .+....+....+....+.|+....+.+.. .+ T Consensus 381 ~~~~l~-~G~~i~~~~i~e~~----Gip~~~~~e~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~ 447 (512) T protein:vir:19 381 AIPKLA-AGMRIPVSWIQEKL----HIPQPVGDEAVF-TIQP-----VVPDNGSQKEAALSAEDIPQEDDIDRMGV-SP 447 (512) T ss_pred HHHHHh-cCCCCCHHHHHHHh----CCCCCCCccccc-cCCC-----ccccccccccccccccCCCchhhHhHHhh-hH Confidence 887776 676 7777666665 444443332111 1100 00001111111111112222211111110 11 No 136 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=98.51 E-value=4e-07 Score=55.67 Aligned_cols=472 Identities=13% Similarity=0.100 Sum_probs=234.3 Q ss_pred CCCChhhhhhhhH-HhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCc-ccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQ-LRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGD-EGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~~~~qy~~~~~-~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d-~~~~~~~~~p~~~k~v~ 75 (527) |.=..++=.=+.+ ..+.+.. .-.+| +.+++.|.+|..-+-... .|+. ......++.+-|.+.++ T Consensus 1 ~~~~~~~~~~~~~~~~~r~~~-------l~~~R~~~e~~w~e~~~y~lP~~~~~----~~~~~~~~~~~~~dst~~~a~~ 69 (535) T protein:vir:94 1 MASSQKREGFAENGAKAVYDA-------LKNDRNSYETRAENCAKYTIPSLFPK----DSDNASTDYTTPWQAVGARGLN 69 (535) T ss_pred CCchhhhhhHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHhccccCCC----CCCccccccCCcccccHHHHHH Confidence 7666553211111 1222222 12233 778888888876441111 1111 11234578888999999 Q ss_pred hhhhhhccCc----ccc-ccCcc-------------hhHHHHH-------HHHHHhcCchhhHHHHhHhhhhcccEEEEE Q lcl|Aclame:pro 76 AKMRFLGQGL----KWE-FSKKD-------------AKVDDAI-------RVLFDRENWEQKFESLKRWTEIRGDYVLLL 130 (527) Q Consensus 76 ~~~~~Lg~~~----~~~-i~~~~-------------~~v~~~l-------r~w~~~e~l~~k~~~~~r~a~~~GDav~~i 130 (527) +.++.|+.+. +|| ++..+ ++|+++| ...+.+.|+...+-++=+..++-|-|++++ T Consensus 70 ~Laa~l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~ 149 (535) T protein:vir:94 70 NLASKLMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLYI 149 (535) T ss_pred HHHHHHHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEee Confidence 9888885433 343 11111 2233333 345667899999999989988899999988 Q ss_pred EecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCccc Q lcl|Aclame:pro 131 IGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAI 207 (527) Q Consensus 131 ~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i 207 (527) -.|+.+. +.++.+.-+.|+-..|.. |+|..|+.-..+. .|++ ..+.+.+... -.| ...+ T Consensus 150 ~~~~~~~----~~f~~~pl~~y~v~~d~~--G~vd~i~r~~~~~~~~l~~~--~~~~~~~~~~--------~~~--~~~v 211 (535) T protein:vir:94 150 PEPEGTY----NPMKLYRLSSYVVQRDAF--GTVLQIVTLDKTAYAALPED--VRNSMDSSQE--------HKG--DEMI 211 (535) T ss_pred ccCcCcc----cceEEEEcCeEEEeeCCC--CCeEEEEeeeeccHHHhhHH--HHHHHHhccc--------cCC--Ccee Confidence 8876553 234566667766666654 6677765321111 0110 0000000000 001 0111 Q ss_pred eeeecccccccccccccccccccceeeeccCcccc--cccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhH Q lcl|Aclame:pro 208 KYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEE--PLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTM 285 (527) Q Consensus 208 ~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~--~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~l 285 (527) .+- +.. |-++...+|.. +. ..+|.... .--.|+...|++.++=...++++||+|=.++.++=+..||+.- T Consensus 212 ~v~----~~v-~~~~~~~~~~~--~~-e~~g~~~~~~~~~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~ 283 (535) T protein:vir:94 212 DVY----THI-YLDEESGEYLK--YE-EIDGVEVEGTDASYPVDACPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQ 283 (535) T ss_pred EEE----EEE-EeeCCCCcEEE--EE-EecCeeeccccccCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHH Confidence 111 110 11111112211 11 11222221 1234778899999999989999999999999999999998877 Q ss_pred HHHHHHHHHhCCceEEeccCCCcCCCCccccee-cCCCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 286 TDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWT-ISPLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 286 sd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~-v~pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) -..-..+...-.|++-. .| |+..++..+. .++|.++.-..++ .+..+...+++...++-++.+..+|...==.- T Consensus 284 ~~~l~~~~~a~~~~~lv---~p-~g~~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~ 359 (535) T protein:vir:94 284 EAIVKMSMISAKVIGLV---NP-AGITQVRRLTKAQTGDFVSGRPEDISFLQLEKAADFSVARAVSEQIEGRLSYAFMLN 359 (535) T ss_pred HHHHHHHHHhccCCccc---cc-ccccchhhcccCCCceeecCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhHh Confidence 66666666666665332 11 2222332222 3456665433332 34555555677777777888877776533111 Q ss_pred hhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc------ccceeEEEEeC Q lcl|Aclame:pro 364 DIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA------DKKLTVTITFR 437 (527) Q Consensus 364 ~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~------~~~~~v~v~w~ 437 (527) .+...|.... .|=++ ..++++|+..++.++.++..+++.-++.+.-.++...+ +.-+.++++ . T Consensus 360 --~~~~~d~~rv---TAtEV-----~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r~g~lP~~p~~~v~~~~v-s 428 (535) T protein:vir:94 360 --SAVQRTGERV---TAEEI-----RYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQATNQIPELPKEAVEPTIS-T 428 (535) T ss_pred --hhccCCCCCc---cHHHH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEe-e Confidence 1111122111 23333 35678888889999988887777655544322221111 111222222 1 Q ss_pred CCCCCCHHHHHHHHHHHHh----c-----C-CccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHH---HHHHh Q lcl|Aclame:pro 438 DPKPVNNEKRFAQLLELWE----A-----G-LIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGI---AQAEA 499 (527) Q Consensus 438 d~lP~D~~~~i~~~v~l~~----a-----G-lls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~---~~~aa 499 (527) ...+.-+.+.++.+....+ . . .|-.+.+++.+.++.|.+. +.++++++.+....++. ..+++ T Consensus 429 ~la~l~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~~q~~~~~~~~~~~~~~ 508 (535) T protein:vir:94 429 GMEALGRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEMAEAAQGTAMQNAAASA 508 (535) T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1122223333333333222 1 2 3677888888888888662 55555544322221111 11111 Q ss_pred cCcccccccccCCCCccc--ccccCCCCCC Q lcl|Aclame:pro 500 ADPFGAQMAAEQGIPDEE--DDQALNGQPL 527 (527) Q Consensus 500 ~d~~g~~~~~d~g~~d~~--~~~~~~~~~~ 527 (527) +.+.++.+. .+|+.. .-++.+-.|= T Consensus 509 g~~~~~~~~---~~~~~~~~~~~~~g~~~~ 535 (535) T protein:vir:94 509 GAGAGTMAT---ASPENMKAAAAQAGMAPN 535 (535) T ss_pred HHhhhcccc---cChHHHHHHHHHhccCCC Confidence 222221111 122111 1122233333 No 137 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=98.51 E-value=4.1e-07 Score=55.60 Aligned_cols=459 Identities=12% Similarity=0.096 Sum_probs=224.6 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |- -++-|..+..-+ ..-+.+++.|.+|..-.-......-+++. ......+.+.|.+.+++.++- T Consensus 1 m~-~~~r~~~L~~~R--------------~~~e~~w~e~~~~tlP~~~~~~~~~~~~~-~~~~~~~dstg~~a~~~LAa~ 64 (522) T protein:vir:10 1 MK-ARERYNQLTTAR--------------QMFLDKAVECSELTLPYLIDDDISSRPNH-KSLTVPWQSVGAKCCVTLAAK 64 (522) T ss_pred Cc-hHHHHHHHHHHh--------------hHHHHHHHHHHHHhhhcccCCCCCCCccc-ccccccccchHHHHHHHHHHH Confidence 55 233344333221 12266778888887654222111111111 122457888899999998888 Q ss_pred hccC-----cccc-ccCcc------------hhHHH-------HHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCC Q lcl|Aclame:pro 81 LGQG-----LKWE-FSKKD------------AKVDD-------AIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDE 135 (527) Q Consensus 81 Lg~~-----~~~~-i~~~~------------~~v~~-------~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~ 135 (527) |+.+ .+|| ++..+ .+|++ .+..-+.+.|+...+-++-+..++-|-|+.++- +. T Consensus 65 l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~--~~ 142 (522) T protein:vir:10 65 LMLAVLPPQTSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNALIFMG--KD 142 (522) T ss_pred HHHhhcCCCCccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCceeEEEc--CC Confidence 7532 3554 22211 11222 333446688899889999999999999996553 31 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCccceeeec Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEE 212 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~ 212 (527) + ++.+.-+.|+-..|+. |+|..|+.-..+. .+..-+ ..++....+. . ..| ...+.. T Consensus 143 -----~--~~~~pl~~y~v~~d~~--G~vd~i~r~~~~t~~ql~~~fg-~~~~~~~~~~--~----~~~--~~~v~v--- 201 (522) T protein:vir:10 143 -----G--LKTFPLTRYVINRDGD--GNVLEIVTKELISRKVLDIELP-EPKPNTGIDE--S----STT--NDDVTI--- 201 (522) T ss_pred -----C--ceEEEcceEEEeeCCC--CCeeEEEeeeeccHHHHHHhcc-hhccchhhhc--c----cCC--CCceEE--- Confidence 1 3445556655555544 6677765432111 000000 0000000000 0 001 011111 Q ss_pred ccccccccccccccccccceee---eccCcccccc-cccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHH Q lcl|Aclame:pro 213 LYEPGKWDDRPESPLEPDDIKK---LSTLTEEEPL-PEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDE 288 (527) Q Consensus 213 ~~~~g~wd~~~~~~~~~~~~~~---~~~~~~e~~l-~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~ 288 (527) ++...++... .++.. +.+......+ --|+..+|++.++=...++++||+|=.++.++-+..||+.--.. T Consensus 202 -~~~v~p~~~~------~~~~~~~~~~~~~~~~~~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~ 274 (522) T protein:vir:10 202 -YTYVKLDKSS------GRWVWHQEAFDKIIPDSRSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQSL 274 (522) T ss_pred -EEEEEeeccC------CceEEEEccCCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 1111111110 01111 1001111111 23777889999999888999999999999999999999988888 Q ss_pred HHHHHHhCCceEEe--ccCCCcCCCCcccceecC-CCeeEecCCCCce--EEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 289 DLIMVFGGLGFYAT--DSAPPRDSRGNMVPWTIS-PLGMVEHGQNNKI--YRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 289 ~~i~~~~g~P~~~~--~g~~~~d~~G~~~p~~v~-pg~~~el~~~~k~--~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) ...++..-+|++-. +|. +++..+.-+ .|.++ -+..+.. ..+...+++....+-++.+..+|...= T Consensus 275 ~~~~~~a~~p~~lv~~~~~------~~~~~l~~~~~~~~v-~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ri~~aF--- 344 (522) T protein:vir:10 275 IEGAAAASKVVFLVSPSST------TKPATIAKAGNGAIV-QGRPEDVAVIQVGKTADFSTAANMATAIEKRLLEAF--- 344 (522) T ss_pred HHHHHHhcCCceeeccccc------cccccccCCCCccee-cCCCccceeecccccccchHHHHHHHHHHHHHHHHH--- Confidence 88888888886443 222 222222212 23332 2222333 333444577778888888888887631 Q ss_pred hhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-cce-----eE-EEEe Q lcl|Aclame:pro 364 DIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-KKL-----TV-TITF 436 (527) Q Consensus 364 ~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-~~~-----~v-~v~w 436 (527) .-+...|.... .|=++. .++++|...++.++.++..+++.=++.+.-.++...+. .++ .+ .|++ T Consensus 345 -l~~~~~d~~rv---TAtEV~-----~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~g~lP~~p~~~~~~~~v~~ 415 (522) T protein:vir:10 345 -LVMNVRNAERV---TAEEVR-----LTQLELEQQLGGIFSLLVIEFLIPYLNRTLLVLQRSNQIPKLPKDIVRPTIVAG 415 (522) T ss_pred -hhccCCCCCCC---CHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccc Confidence 01111132222 133333 56788888888888888777665444332222222111 111 11 1232 Q ss_pred CCCCCCCHHHHHHHHHHHHh-----------cCCccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHH--HHHH Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWE-----------AGLIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGI--AQAE 498 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~-----------aGlls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~--~~~a 498 (527) ..|-.+.+.++.++...+ .-.|-.+++++.+.++.|.+. +.+++++.-+....++. +.++ T Consensus 416 --is~Laraq~~~~l~~~~~~i~~~~~p~~~~~~id~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~~~~~~~~~~ 493 (522) T protein:vir:10 416 --VNALGRGQDRESLTAFVGTIAQTLGPEALMQYLNPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQQAAQQSLVD 493 (522) T ss_pred --hhHHHHHHHHHHHHHHHHHHHHhhCchhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHH Confidence 234455565555433211 123556778888888888653 55554443222221111 1112 Q ss_pred hcCcccccccccC-CCCcccccccCCCCC Q lcl|Aclame:pro 499 AADPFGAQMAAEQ-GIPDEEDDQALNGQP 526 (527) Q Consensus 499 a~d~~g~~~~~d~-g~~d~~~~~~~~~~~ 526 (527) .+...+...++|+ -+|+..+-.+-.++- T Consensus 494 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (522) T protein:vir:10 494 QAGQMTGSPLMDPTKNPQLMDEEQPPMEE 522 (522) T ss_pred HHHHHhcccccCccccHHHHHHhCCCCCC Confidence 2344444444442 233333222222222 No 138 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=98.50 E-value=4.3e-07 Score=55.48 Aligned_cols=395 Identities=11% Similarity=0.063 Sum_probs=174.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |++-.|-+... .. +++...+.-+.+.. ..+. ..|..-......-.|.....|+.+++- T Consensus 1 Mgl~~~~f~~~-------~~---------~~~~~~~~~~~~~~--~~~~----~~g~~v~~~~al~~~~v~~~v~~ia~~ 58 (409) T protein:vir:84 1 MSLFTRIFSGP-------SE---------ERTLTKISGIPSPA--EDWA----MHGDRPGANSAMTLGAFYACVTLLADT 58 (409) T ss_pred CchhhhhhcCC-------Cc---------cccccccccccccc--chhh----ccCcccchhhhhccHHHHHHHHHHHHh Confidence 76644432221 11 01111111000000 0000 001110000001111111222222222 Q ss_pred hccCccccc--cCcchhH--HHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 81 LGQGLKWEF--SKKDAKV--DDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 81 Lg~~~~~~i--~~~~~~v--~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) ++ ..+..+ +..+.++ ....+-+-.+-| +. .-+.......++.|.|+..|.+....+ +-+.+..++|+.+ T Consensus 59 iA-~lp~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g--~~~~L~~l~p~~v 135 (409) T protein:vir:84 59 VA-SLSIDAYRKKDNVRIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEAN--RPTAIMPIHPDCI 135 (409) T ss_pred hh-hCceEEEEecCCcccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCC--ceEEEEEEcCcee Confidence 21 112211 1111111 111111212222 11 233455566777899987777655444 3345677888776 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccce Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) -.....+..+..... .| ..+| .+ + T Consensus 136 ~v~~~~~~~~~~~~~----------------------~~----~~~g------~~------~------------------ 159 (409) T protein:vir:84 136 HVTDAKDEDGDWIEP----------------------VY----RIDG------KV------V------------------ 159 (409) T ss_pred EEEEcCCCcceEEEE----------------------Ee----cCCc------eE------E------------------ Confidence 554333322111000 11 0111 00 0 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG 312 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G 312 (527) + .==|+|+++..+.+.+.|.|-++-+...++..+..-.-......-.|.|-..++.....+++. T Consensus 160 ------------~----~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~ 223 (409) T protein:vir:84 160 ------------P----NHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQ 223 (409) T ss_pred ------------c----hhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHH Confidence 0 001689998777777889997775555544443322222222233456754443322222110 Q ss_pred -c-c-ccee---cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 313 -N-M-VPWT---ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 313 -~-~-~p~~---v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) + . ..|. -+.|.++-++.+-+|..+...+.-..+.+..+...+.|+.+-++|++-+|.++.++. ++..++-+.. T Consensus 224 ~~~~~~~~~~~~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~-~~sn~e~~~~ 302 (409) T protein:vir:84 224 VKQTQKQWIQSHHNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTS-WGTGIEEQGI 302 (409) T ss_pred HHHHHHHHHHHhccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc-ccchHHHHHH Confidence 0 0 0111 234666668889999999976666667888889999999999999999996654332 2222221111 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) .++..+-.- +...+++.+. ..|+ ....+++.+...+-.|.++.++...+++++|+++.-++. T Consensus 303 ~f~~~~l~P---~~~~ie~~l~----~~L~-----------~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R 364 (409) T protein:vir:84 303 NFVRHTLLP---WLRCIEQALD----TFLP-----------RGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVR 364 (409) T ss_pred HHHHHHHHH---HHHHHHHHHH----Hhcc-----------CCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHH Confidence 111111000 1111222211 1111 123466677788888999999999999999999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCC Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQ 525 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~ 525 (527) +++ |.+|-++ -.+. .... --.. .+....+-.++++.|+.+.+ ++. T Consensus 365 ~~~----g~~p~~g-gD~~---~~~~--n~~~-~~~~~~~~~~~~~~~~~~~~---gn~ 409 (409) T protein:vir:84 365 AWE----DAPPIPE-GDIH---LQPM--NFVP-LGYVPPEEPAQEPQPNSATE---GNK 409 (409) T ss_pred HHh----CCCCCCC-ccee---eecc--cccc-cccCCccccCcCCCCCCccC---CCC Confidence 876 4444322 1110 0000 0001 11111111223333333222 222 No 139 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=98.47 E-value=5.4e-07 Score=54.94 Aligned_cols=474 Identities=13% Similarity=0.079 Sum_probs=228.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCcc-cccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDE-GDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~-~~~~~~~~p~~~k~v~~ 76 (527) |.= .|.=-.+....+.+.. .-.+| +.+++.|.+|..-+-... .|.+. .....++.+-|.+.+++ T Consensus 1 m~~-~~~~~~~~~~~~r~~~-------lk~~R~~~e~~w~e~~~~~lP~~~~~----~~~~~~~~~~~~~dst~~~a~~~ 68 (536) T protein:vir:21 1 MAE-KRTGLAEDGAKSVYER-------LKNDRAPYETRAQNCAQYTIPSLFPK----DSDNASTDYQTPWQAVGARGLNN 68 (536) T ss_pred Ccc-hhhchhHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHhcccccCC----CCCcccccccccccccHHHHHHH Confidence 554 2221112222222221 11123 667888888876652111 11111 11245788889999999 Q ss_pred hhhhhccCc----ccc-ccCcc-------------hhH-------HHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 77 KMRFLGQGL----KWE-FSKKD-------------AKV-------DDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 77 ~~~~Lg~~~----~~~-i~~~~-------------~~v-------~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) .++.|+.+. +|| ++..+ ++| .+.+..-+.+.|+...+-++=+..++-|-|+.++- T Consensus 69 Laa~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~ 148 (536) T protein:vir:21 69 LASKLMLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLP 148 (536) T ss_pred HHHHHHHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEe Confidence 888885433 332 11111 123 33445566688999999999999988899997765 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCcc-ccCCccceee Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGK-PVPGGAIKYT 210 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~-p~~~g~i~~~ 210 (527) =++.++ . ..++.+.-+.|+-..|++ |+|..|+.-..+... + . ...|.+.....+. .-+...+.. T Consensus 149 e~~~~~--~-~~f~~~pl~~~~v~~d~~--G~vd~i~r~~~~t~~-~----l----~~~fg~~~~~~~~~~~~~~~v~v- 213 (536) T protein:vir:21 149 EPEGSN--Y-NPMKLYRLSSYVVQRDAF--GNVLQMVTRDQIAFG-A----L----PEDIRKAVEGQGGEKKADETIDV- 213 (536) T ss_pred eCCCCc--e-eeEEEEEcCeEEEeeCCC--CCeeEEeeeeeccHH-H----H----HHhhhhhhcccccccccccceeE- Confidence 443331 2 224556667776666644 567777532111100 0 0 0000000000000 000111111 Q ss_pred ecccccccccccccccccccceeeeccCccc--ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHH Q lcl|Aclame:pro 211 EELYEPGKWDDRPESPLEPDDIKKLSTLTEE--EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDE 288 (527) Q Consensus 211 ~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e--~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~ 288 (527) ++...++.+ ..++.. +. ..++.++ +.--.|....|++.++=...++++||+|=.++.++-+..||+.--.. T Consensus 214 ---~~~v~~~~~-~~~~~~--~~-e~~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~ 286 (536) T protein:vir:21 214 ---YTHIYLDED-SGEYLR--YE-EVEGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAI 286 (536) T ss_pred ---EEEEEEecC-CCcEEE--Ee-ccCCeeeccccCccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 111111111 111110 01 1122221 11123456789999999989999999999999999999999887766 Q ss_pred HHHHHHhCCceE-E-eccCCCcCCCCcccc-eecCCCeeEecCCC-CceEEeccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 289 DLIMVFGGLGFY-A-TDSAPPRDSRGNMVP-WTISPLGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 289 ~~i~~~~g~P~~-~-~~g~~~~d~~G~~~p-~~v~pg~~~el~~~-~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) -..+.....|++ + .+|. .++.. .+-++|.++.-..+ -.+..+...+++....+-++.+..+|...=-.- T Consensus 287 l~~~~~a~~~~~lv~p~g~------~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~- 359 (536) T protein:vir:21 287 VKMSMISSKVIGLVNPAGI------TQPRRLTKAQTGDFVTGRPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLN- 359 (536) T ss_pred HHHHHHHhcCCcccCcccc------cchhhhccCCCcceecCCcccceeeeccccccchHHHHHHHHHHHHHHHHHhhh- Confidence 666666666542 2 2222 12221 12344555432222 123444444567777777777777775532111 Q ss_pred hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc------cceeEEEEeCC Q lcl|Aclame:pro 365 IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD------KKLTVTITFRD 438 (527) Q Consensus 365 va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~------~~~~v~v~w~d 438 (527) .+...|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.++...+. .-+.+.++ .. T Consensus 360 -~l~~~~~~r~---TAtE-----V~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r~g~lP~~p~~~v~~~~v-s~ 429 (536) T protein:vir:21 360 -SAVQRTGERV---TAEE-----IRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQATQQIPELPKEAVEPTIS-TG 429 (536) T ss_pred -hcccCCCCCc---cHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChhhccceEE-ec Confidence 1111122111 1333 3467888888999999998887776555553333222111 11123333 12 Q ss_pred CCCCCHHHHHHHHHHHHh--c-------C-CccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHH--H-Hhc Q lcl|Aclame:pro 439 PKPVNNEKRFAQLLELWE--A-------G-LIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQ--A-EAA 500 (527) Q Consensus 439 ~lP~D~~~~i~~~v~l~~--a-------G-lls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~--~-aa~ 500 (527) ..+..+.+.++.++...+ + . -|-...+++.+.++-|.+| +.++++++-+..+.++..+ + +++ T Consensus 430 l~~l~r~~~~~~l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~ 509 (536) T protein:vir:21 430 LEAIGRGQDLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALA 509 (536) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 234444555555544432 1 2 2677888888888877644 6666666533222211111 1 112 Q ss_pred CcccccccccCCCCc-ccccccCCCCCC Q lcl|Aclame:pro 501 DPFGAQMAAEQGIPD-EEDDQALNGQPL 527 (527) Q Consensus 501 d~~g~~~~~d~g~~d-~~~~~~~~~~~~ 527 (527) -.++..+. .|-++ ++--++.|-+|- T Consensus 510 ~~~~~~~~--~~~~~~~~~~~~~g~~~~ 535 (536) T protein:vir:21 510 QGMAAQAT--ASPEAMAAAADSVGLQPG 535 (536) T ss_pred HHHHHHHh--cChhhHHhhhhccccCCC Confidence 12221111 12121 111122222222 No 140 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=98.45 E-value=6e-07 Score=54.68 Aligned_cols=388 Identities=13% Similarity=0.137 Sum_probs=166.6 Q ss_pred HHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhhhccCcccccc----Cc----chhHHHHHHH-HHHhc-C Q lcl|Aclame:pro 39 YEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFS----KK----DAKVDDAIRV-LFDRE-N 108 (527) Q Consensus 39 ~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~----~~----~~~v~~~lr~-w~~~e-~ 108 (527) |.++-.|+ |.....|+..+.-+ -++++.+. .. .....+.++. |+-.+ + T Consensus 1 l~~l~~~n---------------------~~v~~ci~~ia~~i-a~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn 58 (467) T protein:vir:31 1 MAELLEHN---------------------ETHAKCVHAKSRYV-AGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSN 58 (467) T ss_pred ChhhhhcC---------------------HHHHHHHHHHHHhh-hcCCeEEEEccCcccccchhhhhhhHHHHhhccCCC Confidence 11111111 22334555544444 22233221 11 1112222222 22211 1 Q ss_pred ------------chhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCC Q lcl|Aclame:pro 109 ------------WEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHP 176 (527) Q Consensus 109 ------------l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~p 176 (527) +..-+.....+..+-|.++..+.++. .|+-+.+..+||+++-+.-+.. ++... +.. T Consensus 59 ~~~~~~~~~~~t~~~~~~~~~~~l~l~Gn~~i~~~r~~---~G~~~~l~~l~~~~v~~~~d~~---~~~~~-----~~~- 126 (467) T protein:vir:31 59 WQVGPMESERATATNVLQTAWTDYEAIGWLTIEILTQT---DGTPTGLAYVPGHTIRKRMDER---GFVQL-----LEE- 126 (467) T ss_pred ccccchhhHhhHHHHHHHHHHHHHHhcCCeEEEEEECC---CCcEEEEEEeCCceeEeeeecc---eeEee-----cCC- Confidence 12234456677778899998888874 2445678889998888776553 11100 110 Q ss_pred CCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEee Q lcl|Aclame:pro 177 DSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHF 256 (527) Q Consensus 177 d~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~ 256 (527) +..|-..+.+.......+.+......+ .+-.. ......|.+ =|+|| T Consensus 127 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----------------~~~~~~~~~--diih~ 172 (467) T protein:vir:31 127 -----------KEKYFGVAGDRYQTNGNGDLDPVFVDA-----DDGST----------------GTSVSNPAN--ELIFK 172 (467) T ss_pred -----------ceeeEEeccccceeecccceeeeeeee-----ccccc----------------cceeEeccc--cEEEe Confidence 001111112111111112222221111 10000 000011111 26899 Q ss_pred CCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCc--eEEeccCCCcCCCCc--cccee----------- Q lcl|Aclame:pro 257 RGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLG--FYATDSAPPRDSRGN--MVPWT----------- 318 (527) Q Consensus 257 pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P--~~~~~g~~~~d~~G~--~~p~~----------- 318 (527) ++..+.+.++|.|.+.-....++.- ..-......+ .+.| ++..++....++.-+ ..-|. T Consensus 173 r~~~~~~~~~G~s~~~~~~~~i~~~---~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~ 249 (467) T protein:vir:31 173 RNHSPLYPHYGAPDIIPAVKTIRGD---SAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDNNEDNHRTAF 249 (467) T ss_pred cCCCCCCCcccccHHHHHHHHHHHH---HHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhhhcchhhhhh Confidence 8876678889988776554443322 2222222222 4455 333344321110000 00000 Q ss_pred ------cCCCeeEecCCCCceEE-------ecc-ccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH-HHHH Q lcl|Aclame:pro 319 ------ISPLGMVEHGQNNKIYR-------VNG-VASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI-ALDL 383 (527) Q Consensus 319 ------v~pg~~~el~~~~k~~~-------ld~-~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~-ALql 383 (527) ...|.+.-++.+.++.. ++. .+.-..|.+..+...+.|+.+=++|+.-+|-.+.++--|.+ +... T Consensus 250 ~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~~s~~e~~~~ 329 (467) T protein:vir:31 250 IETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAFSTDAEEQRK 329 (467) T ss_pred hhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcccCHHHHHH Confidence 01223333444433333 221 22335677888888899999999999999865443221221 1111 Q ss_pred H-----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 384 K-----LSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAG 458 (527) Q Consensus 384 ~-----~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aG 458 (527) . +.|++ ..+++.+ -..+++..+. .....+++.+...+..|.++.++...+++++| T Consensus 330 ~f~~~~l~P~~-----------~~ie~~l---n~~l~~~~~~------~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G 389 (467) T protein:vir:31 330 EFAEETIQPKQ-----------HDFGELL---YELVHKQGLD------APDWTIEFELAKPDTKLQDVEIASQRVQAMQG 389 (467) T ss_pred HHHHHHHHHHH-----------HHHHHHH---HHhhcchhhc------cCCceEEEecchhhccCHHHHHHHHHHHHhCC Confidence 1 22222 1222222 1122211111 12234677788999999999999999999999 Q ss_pred CccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc-----------ccCCCCCC Q lcl|Aclame:pro 459 LIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD-----------QALNGQPL 527 (527) Q Consensus 459 lls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~-----------~~~~~~~~ 527 (527) +++..++.+++ |++|-.++.-....-.. ......+. .....+++. +.+..+ +....+++ T Consensus 390 ~~T~NE~R~~~----Gl~pi~d~~~~~~~~~~----~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (467) T protein:vir:31 390 LLTVNELRDEF----GFEPFPEEHVYGGETLV----AEVTGGSG-PGGGIGDQI-EQLVEDRADEIIDSYQADLETEQLI 459 (467) T ss_pred CcCHHHHHHHh----CCCCCCcccccCCcccc----cccccccC-CCCcccCcC-CCCCCCcccchHhhhhhccccchhh Confidence 99999999876 45543221100000000 01111111 111111111 111111 12222333 No 141 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=98.43 E-value=6.9e-07 Score=54.37 Aligned_cols=380 Identities=11% Similarity=0.031 Sum_probs=175.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC-hhheEeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN-TSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~-~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |++=.+-....+ .++..|.. +..+..+. +.. -|- .+++ .- ...|.++++ T Consensus 1 M~~f~~~~~~~~-----------~~~~~~~~-------~~~~~~~~~~~~--~v~-~~~a-----l~----~~~V~~~v~ 50 (397) T protein:vir:38 1 MPLLKLNKSHSQ-----------GFSLNDPD-------WVNFLTGGEAQK--YVS-ADTA-----LK----NSDIFSLIM 50 (397) T ss_pred CcchhhhhcccC-----------cccCCchh-------hhhhhcCCcCCc--eec-hHHh-----hc----cHHHHHHHH Confidence 777543221111 11111111 12222221 111 010 1111 00 123444444 Q ss_pred hhccCcc-ccccCcchhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEE Q lcl|Aclame:pro 80 FLGQGLK-WEFSKKDAKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP 154 (527) Q Consensus 80 ~Lg~~~~-~~i~~~~~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp 154 (527) ++.-... ..+.+.+.. ++.+..+-| |. .-.....+..++.|.|+..+.+|. + |+-+.+..++|..+-+ T Consensus 51 ~ia~~ia~~p~~~~~~~----~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~-~--g~~~~l~~l~~~~v~i 123 (397) T protein:vir:38 51 QLSGDLAMVRYTSESDR----SQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNT-N--GVDLSWEYLRPSQVQP 123 (397) T ss_pred HHHHHHhhCcccccccH----HHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC-C--CcEEEEEEEcCceeEE Confidence 4421111 112222222 333443333 22 334566677788899988888874 2 3456778889988876 Q ss_pred EecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceee Q lcl|Aclame:pro 155 YEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKK 234 (527) Q Consensus 155 ~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~ 234 (527) ..+.++.. .. ++.++ ...+ ++.. +. T Consensus 124 ~~~~~~~~--~~--------------------y~~~~----~~~~-----~~~~------------------------~~ 148 (397) T protein:vir:38 124 MLLQDGSG--LI--------------------YNINF----DEPA-----IGYM------------------------EN 148 (397) T ss_pred EEcCCCce--EE--------------------EEEEe----cccc-----ccce------------------------eE Confidence 65554221 11 11111 0000 0000 00 Q ss_pred eccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC-c Q lcl|Aclame:pro 235 LSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG-N 313 (527) Q Consensus 235 ~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G-~ 313 (527) ++ -+- |+||++..+.+..+|.|-|+-+...+...+....-......-.|.|-..++-....+.+. + T Consensus 149 ---------~~--~~e--iih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~ 215 (397) T protein:vir:38 149 ---------VP--AAD--VIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAET 215 (397) T ss_pred ---------ec--Ccc--EEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHH Confidence 00 001 789998877777889998887777666554444434444444566754443222121110 0 Q ss_pred c--ccee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 314 M--VPWT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 314 ~--~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) . .-+. -..|.++-++.+.+|..+...++-..+.+..+...+.|+..-++|+.-+|....+. .|--+.++.|. T Consensus 216 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~-~~~e~~~~~~~ 294 (397) T protein:vir:38 216 RIARSKEISKQIHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQ-SSITQISGQYA 294 (397) T ss_pred HHHHHHHHHhcccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc-cHHHHHHHHHH Confidence 0 0000 12455555889999999998888888999999999999999999999998554322 11111122111 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) .+- + .+...+++.+ -..++..++ ..+.| .+-.|.++.++...+++++|+++..++. T Consensus 295 ----~~l--~-P~~~~ie~~l---n~~l~~~~~------------~~~~~--~~~~d~~~~~~~~~~~~~~G~~t~nE~R 350 (397) T protein:vir:38 295 ----KSL--N-RYVQAIVGEL---NDKLHANIS------------ANIRF--AIDAMGDQYASTISSSVKGGTIAGNQAR 350 (397) T ss_pred ----HHH--H-HHHHHHHHHH---HHhccChhc------------ccccc--cccCCHHHHHHHHHHHHhCCCcCHHHHH Confidence 000 0 0111122211 111121110 11122 2334778888888999999999999999 Q ss_pred HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHhcC--cccccccccCCCCcccccccCCCC Q lcl|Aclame:pro 467 EELSKIMGFELTE-EDFRQATEDKKTQGIAQAEAAD--PFGAQMAAEQGIPDEEDDQALNGQ 525 (527) Q Consensus 467 ~~L~~~g~~~~~e-~~~~~~~e~~a~~a~~~~aa~d--~~g~~~~~d~g~~d~~~~~~~~~~ 525 (527) ++| |.+|.+ .+.-.. + .....+..+ +.|....++++++ +.+++. T Consensus 351 ~~l----g~~p~~~~d~~~~-~-----~~~~~~~~~~~~~~g~~~~~~~~e-----~~~~~~ 397 (397) T protein:vir:38 351 FIL----QNSGYLAKDLPDP-E-----KEPQQAIQLIQQEGGENDGNNSDE-----RGSDPE 397 (397) T ss_pred HHh----CCCCCCCCccccc-c-----ccccccccccccccCCCCCCCCCC-----CCCCCC Confidence 976 333322 211100 0 000011111 1111111111111 222222 No 142 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=98.39 E-value=8.9e-07 Score=53.76 Aligned_cols=464 Identities=13% Similarity=0.090 Sum_probs=223.4 Q ss_pred CCCC-hhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc-ccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQD-KRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG-DQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~-~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~-~~~~~~~p~~~k~v~~~~ 78 (527) |--. ++-|..+..-+.- =+.+++.|.+|..-+-.. -.|.+.. ....++.+.|...+++.+ T Consensus 1 mk~~a~~r~~~l~~~R~~--------------~e~~w~e~~~y~lP~~~~----~~~~~~~~~~~~~~dstg~~a~~~La 62 (542) T protein:vir:78 1 MKGLAQARYSAMRADRED--------------FLDMARRCAALTLPYLLT----EDGHASGGRLQQPYQSLGSKGVNALS 62 (542) T ss_pred ChhHHHHHHHHHHHHhhH--------------HHHHHHHHHHHhccccCC----CCCCcccccccccccchHHHHHHHHH Confidence 4333 3344444332211 156777888886543111 0122211 234678888999999988 Q ss_pred hhhcc-----Ccccc-ccCc----------ch----hHHH-------HHHHHHHhcCchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 79 RFLGQ-----GLKWE-FSKK----------DA----KVDD-------AIRVLFDRENWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 79 ~~Lg~-----~~~~~-i~~~----------~~----~v~~-------~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) +.|+. +.+|| ++.. +. +|+. .+..-+.+.|+...+.++-+..++-|-|++++- T Consensus 63 a~l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~ 142 (542) T protein:vir:78 63 SKLMLSLFPIQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLVFAG 142 (542) T ss_pred HHHHHhhcCCCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEec Confidence 88853 23564 2221 21 2333 334455578899888899999888899986553 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCccce Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIK 208 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~ 208 (527) + + + ++.+.-+.|+-..|++ |+|..|+--..+. .++.=+ ...+...+. ....+++ ... T Consensus 143 --~--~---~--~~~~pl~~y~v~~d~~--G~vd~v~r~~~~t~~ql~~~fg-~~~l~~~~~----~~~~~~~----~~~ 202 (542) T protein:vir:78 143 --K--K---T--LKVYPLDRYVIERDGD--GNVIEIITRELVDRSLLPAEFQ-KQSLLEGKD----SNAVGED----GPK 202 (542) T ss_pred --C--C---C--ceEEecceeEEeeCCC--CCeEEEeeeeecCHHHHHHhhc-cccCchHHH----hhccccC----CCe Confidence 2 1 2 2344445555555544 6677665321111 000000 000000000 0000000 000 Q ss_pred eeecc-------cccccccccccccccccceeeeccCccc-ccc-cccccccceEeeCCCCCCCCccCCccccchHHHHH Q lcl|Aclame:pro 209 YTEEL-------YEPGKWDDRPESPLEPDDIKKLSTLTEE-EPL-PEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIA 279 (527) Q Consensus 209 ~~~~~-------~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l-~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~d 279 (527) ++..| -++..+..++..-+ -+..-.++... ..+ -.|+...|++.++=...++++||+|=.++.++-+. T Consensus 203 ~~v~~~v~pr~~~~~~~~~~~~~~~~---s~~~e~~g~~v~~~~~e~g~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k 279 (542) T protein:vir:78 203 FGVAQGKGGRNDAEVFTCCKLVDGQH---RWHQECDGKEIKGSRSSSPLKHSPWLPLRFNVVDGESYGRGRVEEFFGDLS 279 (542) T ss_pred EEEEEEeecccCCccccccccCCCeE---EEEEEeccccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHH Confidence 01000 01111111111000 01111122222 112 23777899999999888999999999999999999 Q ss_pred HHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccce-ecCCCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 280 SVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPW-TISPLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQ 357 (527) Q Consensus 280 eLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~-~v~pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~ 357 (527) .||+.--.....++..-+|++-. ++ |+..++..+ +-++|.++.-..++ ....+...+++....+-++.+..+|. T Consensus 280 ~L~~l~~~~l~~~~~a~~pp~lv---~~-~g~~~~~~~~~~~~g~iv~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~ 355 (542) T protein:vir:78 280 SLDALTRSLIEGSAAAAKVVFMV---SP-SATTKPQSLARAGTGAIIQGRAEDVSVVQANKGADFRTVQEMIRDLSQRIS 355 (542) T ss_pred HHHHHHHHHHHHHHHHhcCceee---cc-ccccchhhcccCCCceeecCCccceeeeecccccchhHHHHHHHHHHHHHH Confidence 99999999999999998987443 11 222233322 24456555322222 12333334477778888888888887 Q ss_pred HhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc----ccceeEE Q lcl|Aclame:pro 358 QTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA----DKKLTVT 433 (527) Q Consensus 358 ~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~----~~~~~v~ 433 (527) ..= ......|.... .|=+ +..++++|...++.++.++..+++.=++.+--.++...+ ...--+. T Consensus 356 ~aF----l~~~~~d~~rv---TAtE-----V~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~lv~ 423 (542) T protein:vir:78 356 DAF----LILNVRQSERT---TATE-----VREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQRSKQLPSLPKGLVM 423 (542) T ss_pred HHh----cccccCCcccc---cHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhcee Confidence 642 11111121111 2322 446788888899999988877776644443212221111 1111234 Q ss_pred EEeCCCCCCCHHHHHHHHHHH-------Hhc-------CCccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHH Q lcl|Aclame:pro 434 ITFRDPKPVNNEKRFAQLLEL-------WEA-------GLIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGI 494 (527) Q Consensus 434 v~w~d~lP~D~~~~i~~~v~l-------~~a-------Glls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~ 494 (527) +.+-.++. ..+..+++..+ -+. -.+-.+.+++.+.++.|.+. +.+++++..+....++. T Consensus 424 ~~~~s~La--~~~r~~~~~~l~~~~~~i~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~ 501 (542) T protein:vir:78 424 PTVVAGLG--GVGRGEDRAALIEFMQTVGQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQM 501 (542) T ss_pred eeeechHH--HHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHH Confidence 44444443 23322222221 111 23567788888888877652 34544444333332222 Q ss_pred HHH-------HhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 495 AQA-------EAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 495 ~~~-------aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) .++ +++.+.+. ...+.+.+++ ++.-..|- T Consensus 502 ~~al~~~a~~~a~~~~~~-~~~~~~~a~~---~~~~~~~~ 537 (542) T protein:vir:78 502 TASLMGQAGQLAKSPIGE-KMMQQINAPG---QEAPAGPQ 537 (542) T ss_pred HHHHHHhhhhcccccccc-chhhhcCCCC---cCCCCCCc Confidence 111 11111111 1111122211 22222233 No 143 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=98.33 E-value=1.3e-06 Score=52.88 Aligned_cols=472 Identities=14% Similarity=0.103 Sum_probs=216.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCccc-ccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDEG-DQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~~-~~~~~~~p~~~k~v~~ 76 (527) |=-+-+ +.+.. .-.+| +.+++.|.+|..-+-... .|.+.. ....++.+.|...+++ T Consensus 1 m~~~~~---------~r~~~-------l~~~R~~~e~~w~e~~~y~lP~~~~~----~~~~~~~~~~~~~dst~~~a~~~ 60 (555) T protein:vir:17 1 MKHSAQ---------AKYMM-------LRADREDYLDSGRQSARLTLPYILTD----EGHVQGGYLPTPWQSVGSKGVNV 60 (555) T ss_pred ChhHHH---------HHHHH-------HHHHhhHHHHHHHHHHHHhcccccCC----CCCcccccccccccccHHHHHHH Confidence 321111 11111 11122 566777888865541110 111111 1235778889999999 Q ss_pred hhhhhcc-----Ccccc-ccCcc---------hhHHHHH-----------HHHHHhcCchhhHHHHhHhhhhcccEEEEE Q lcl|Aclame:pro 77 KMRFLGQ-----GLKWE-FSKKD---------AKVDDAI-----------RVLFDRENWEQKFESLKRWTEIRGDYVLLL 130 (527) Q Consensus 77 ~~~~Lg~-----~~~~~-i~~~~---------~~v~~~l-----------r~w~~~e~l~~k~~~~~r~a~~~GDav~~i 130 (527) .++.|+. +.+|| ++..+ .+++..+ ..-+.+.|+...+-++=+..++-|-|++++ T Consensus 61 Laa~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~ 140 (555) T protein:vir:17 61 LASKLMLSLFPVNTSFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALLYQ 140 (555) T ss_pred HHHHHHHhhcCCCCcccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEEe Confidence 8888853 23554 22221 1233333 334446888888888888888889998655 Q ss_pred EecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCcccee-eeeeeeeeeeeecCCccccCCcc Q lcl|Aclame:pro 131 IGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNE-KCARVQKYMKTLDDDGKPVPGGA 206 (527) Q Consensus 131 ~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~-k~~rr~~~~~~~~~~g~p~~~g~ 206 (527) |+ . + ++.+.-+.|+-..|+. |+|..|+.-..+. .++.=+... .-..|.... ...++....--. T Consensus 141 --~~-~----~--~~~~pl~~y~v~~d~~--G~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~--~~~d~~~~~~~~ 207 (555) T protein:vir:17 141 --GK-K----N--LKLYPLDRFVVSRDGE--GNVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNA--VGEDGPKMGVTA 207 (555) T ss_pred --cC-C----c--eeEEEcCeEEEeeCCC--cCeeEEEeeeeecHHHHHHHhhhccccchhhhhhh--ccccchhhhhhh Confidence 22 1 1 2334445555555443 6666665321111 000000000 000000000 000000000000 Q ss_pred ce----eeecccccccccccccccccccceeeeccCccc-c-cccccccccceEeeCCCCCCCCccCCccccchHHHHHH Q lcl|Aclame:pro 207 IK----YTEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-E-PLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIAS 280 (527) Q Consensus 207 i~----~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~-~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~de 280 (527) +. +....++.-.+-.++...+ -+..-.++.+. . .---|+...|++.++=...++++||+|=.++.++-+.. T Consensus 208 ~~~~~~~~~~~~~v~t~~~~~~~~~---~~~~e~~~~~v~~~l~e~g~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~ 284 (555) T protein:vir:17 208 PGGRDKGKSNDALVYTYVCRKDGQV---KWHQECDGKVIPGSNSSAPYTHNPWIPLRFNIVDGEAYGRGRVEEFMGDLKS 284 (555) T ss_pred hcccccCCCcceeEeecccccCCee---EEEEecCceeccccccccCcccCCeeeeeeeecCCCccccchHHHHHHHHHH Confidence 00 0000000000000000000 00000112221 1 11347778999999999899999999999999999999 Q ss_pred HHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEe--ccccChHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 281 VNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRV--NGVASLEPSQTHMNKAEEAMQQ 358 (527) Q Consensus 281 Ln~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~l--d~~~~la~~~~~~d~L~~~l~~ 358 (527) ||+.--..-..+...-+|++-. + .++..++..+.-++...+.-+.-+.+..+ ...+++...++-++.+..+|.. T Consensus 285 L~~l~~~~l~~~~~~~~pp~lv---~-~~g~~~~~~l~~~~~g~v~~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~ 360 (555) T protein:vir:17 285 LEALSQAMVEGSAASAKVVFMV---S-PSATTKPQNLALAANGAIIQGRPDDVSVVQANKAADFRTVLEMIQKLEQRISD 360 (555) T ss_pred HHHHHHHHHHHHHHHhCCceee---c-cccccCcceeecCCCceeecCCcccceeeeccccchhhHHHHHHHHHHHHHHH Confidence 9999888889999998987433 1 12233444444444222322222333333 3334677777778888777765 Q ss_pred hhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-cc-----eeE Q lcl|Aclame:pro 359 TKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-KK-----LTV 432 (527) Q Consensus 359 vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-~~-----~~v 432 (527) .-- .+...|... =.|=+ +..++++|...++.++.++..+++.=++.+.-.++...+. ++ +.+ T Consensus 361 aFm----~~~~~d~~r---~TAtE-----V~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r~g~lP~~p~~~v~~ 428 (555) T protein:vir:17 361 AFL----MLQVRQSER---TTATE-----VQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQKQRKLPQLPKDLVQP 428 (555) T ss_pred HHh----hcCCCCccc---chHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHhhhcc Confidence 311 111112211 12333 4467889999999999998877776554443222222211 11 112 Q ss_pred EEEeCCCCC-CCHHHHHHHHHH----HHhcC-------CccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 433 TITFRDPKP-VNNEKRFAQLLE----LWEAG-------LIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGI- 494 (527) Q Consensus 433 ~v~w~d~lP-~D~~~~i~~~v~----l~~aG-------lls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~- 494 (527) .++ -++. .-+.+.++.++. +-+.+ .|..+.+++.+.++.|.+| +.+++++..+....++. T Consensus 429 ~i~--~~l~~l~r~~~~~~l~~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~ivrs~eev~~~rq~~~~~~~q 506 (555) T protein:vir:17 429 TVV--AGLWGVGRGQDKQQLMEFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQLINSPETMKQLGDQQKQDMVQ 506 (555) T ss_pred cee--ehHHHHHHHHHHHHHHHHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHH Confidence 222 1111 112333333322 22222 3677788888888877644 55555544221111111 Q ss_pred ------HHHHhcCcccccccccCCCCcccccccCC------CCCC Q lcl|Aclame:pro 495 ------AQAEAADPFGAQMAAEQGIPDEEDDQALN------GQPL 527 (527) Q Consensus 495 ------~~~aa~d~~g~~~~~d~g~~d~~~~~~~~------~~~~ 527 (527) +.+++.++.+.+++ -.|.+++...++.+ -+|= T Consensus 507 ~~~~~qa~~~~~~~~~~~~~-~~~~~~~~~a~~~~~a~~~~~~~~ 550 (555) T protein:vir:17 507 ASLINQAGQLAKTPMAEQAM-QLIQQQQEGAQDAGAAESETSSAE 550 (555) T ss_pred HHHHHHHHHHHhhhhhhhHH-hccccchhhhhHHHHHHhhcCCcc Confidence 11111222222221 11233333222221 0111 No 144 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=98.27 E-value=1.8e-06 Score=52.08 Aligned_cols=397 Identities=11% Similarity=0.063 Sum_probs=176.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |=+.+ .|......-+..+ -.+....+++.+....--..+-..++ ...|.....|+.+++- T Consensus 1 m~~~~--------~f~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~v~~~~a-----l~~~~v~~~i~~Ia~~ 60 (416) T protein:vir:12 1 MLLER--------MFEKRSGSSDHED-------GFNNILLNMFGGRKTASGERVSESNS-----LVQPDIFACVNVLSDD 60 (416) T ss_pred Cccch--------hcccccCccccCc-------cchhHHHHhhcCcccccCceechhhh-----hccHHHHHHHHHHHHh Confidence 43331 0000000000000 01223344444332211111111111 1112222333333322 Q ss_pred hc-cCcc-ccccCcc-hhHH--HHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccce Q lcl|Aclame:pro 81 LG-QGLK-WEFSKKD-AKVD--DAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPST 151 (527) Q Consensus 81 Lg-~~~~-~~i~~~~-~~v~--~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~ 151 (527) ++ +.+. |..+.++ +++. ...+.+..+-| |. .-........++.|.|+..+.+|. .|+-+.+..++|.+ T Consensus 61 ia~l~~~~~~~~~~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~---~G~~~~L~~l~~~~ 137 (416) T protein:vir:12 61 IAKLPIHTYKRTDGGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGS---HGYPEALFPLRPDY 137 (416) T ss_pred hhhCceEEEEecCCccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC---CCcEEEEEEECCcc Confidence 21 1111 1111111 1110 11222222222 11 223455566777899988888874 24445677777776 Q ss_pred EEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccc Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDD 231 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~ 231 (527) +=+..+++... +.|. ... +|. ..+ T Consensus 138 v~v~~~~~~~~--------------------------~~~~-~~~-~g~-------~~~--------------------- 161 (416) T protein:vir:12 138 TNAYVHPTTGM--------------------------LWYQ-TVL-NGK-------AIE--------------------- 161 (416) T ss_pred eEEEEeCCCcE--------------------------EEEE-Eec-CCe-------EEE--------------------- Confidence 65443332110 0110 000 010 000 Q ss_pred eeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC Q lcl|Aclame:pro 232 IKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR 311 (527) Q Consensus 232 ~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~ 311 (527) ++ .=-|+|+++..+ +.+.|.|-++-+...++..+....-......-.+.|-.+++-....++. T Consensus 162 ------------~~----~~eiih~~~~~~-~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e 224 (416) T protein:vir:12 162 ------------LY----DYEVLHFKGLST-DGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDEK 224 (416) T ss_pred ------------ec----CccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHH Confidence 00 112678887543 4577888776666655554433333333334456674444332222211 Q ss_pred C-c--cccee--cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH-----H Q lcl|Aclame:pro 312 G-N--MVPWT--ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA-----L 381 (527) Q Consensus 312 G-~--~~p~~--v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A-----L 381 (527) . + ...|+ .+-|.++-++.+.++..++..+.-..+.+..+...+.|+..-++|..-+|..+.++..+-.. + T Consensus 225 ~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~ 304 (416) T protein:vir:12 225 PKENVRKEWKRVNKVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEYV 304 (416) T ss_pred HHHHHHHHHHHHhcCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHHH Confidence 0 0 01111 23466666889999999998777677888889999999999999999998654332211111 1 Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc Q lcl|Aclame:pro 382 DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIP 461 (527) Q Consensus 382 ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls 461 (527) +-.+.|++. .+++. +-..++...+.. ....+++.+...+..|.++.++...+++.+|+++ T Consensus 305 ~~~l~P~~~-----------~ie~~---l~~~l~~~~~~~------~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T 364 (416) T protein:vir:12 305 RNTLQPWIV-----------NFEQE---LNVKLFLDHDQK------SGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLN 364 (416) T ss_pred HHHHHHHHH-----------HHHHH---HHHhhcCchhhc------CCceEEeechhhhccCHHHHHHHHHHHHhCCCcC Confidence 222222222 11121 111122111111 1123566677889999999999999999999999 Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 462 AKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 462 ~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) .-++.++| |.+|-+ .-.+. .... -....|..+.+-..+.|....-+|...+| T Consensus 365 ~NE~R~~~----gl~Pi~-ggd~~---~~~~---n~~~~~~~~~~~~~~~~~~~~gge~~~~g 416 (416) T protein:vir:12 365 KDEIRELL----ERNPIE-NGDKY---ISSL---NYVFLDFLEEYQRLKAGGAMKGGDNKNEG 416 (416) T ss_pred HHHHHHHh----CCCCCC-Cccee---eecc---ccccccccchhhccccccccCCCCCcCCC Confidence 99999977 545532 21111 0000 00011111111111111111111222222 No 145 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=98.22 E-value=2.5e-06 Score=51.32 Aligned_cols=333 Identities=11% Similarity=0.057 Sum_probs=153.6 Q ss_pred cccccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCC Q lcl|Aclame:pro 60 GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDE 135 (527) Q Consensus 60 ~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~ 135 (527) -.+.|+.+=-..+.++....+| |+ .+-| |. .-........++.|.|+..+..|. T Consensus 1 ia~lp~~~~~~~~~~~~~l~~l------------------L~---~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~- 58 (348) T protein:vir:93 1 MASLPLKMYEDYKVVNTEVSDL------------------LT---VSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI- 58 (348) T ss_pred CcccceEeEecCcCcccHHHHH------------------HH---hCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECC- Confidence 1222222111111222222222 11 1111 11 112333445566899988888764 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccc Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYE 215 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~ 215 (527) + |+=+.+..++|..+=+..++++ +++.|. .....|.. .+ T Consensus 59 ~--G~~~~L~~l~~~~v~~~~~~~~--------------------------~~~~y~-~~~~~g~~-------~~----- 97 (348) T protein:vir:93 59 Y--HQPSKLFLLNPDVVEMLIENQS--------------------------RELYYS-IHAATGNK-------LI----- 97 (348) T ss_pred C--CcEEEEEEEcCCceEEEEeCCC--------------------------cEEEEE-EEcCCCeE-------EE----- Confidence 2 2322444455544433322221 111111 00011100 00 Q ss_pred cccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 216 PGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFG 295 (527) Q Consensus 216 ~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~ 295 (527) + +-+ =|+||++..+.+..+|.|-++-+...++..+.. ... ....+. T Consensus 98 -------------------~-----------~~~--eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~-~~~-~~~~~~ 143 (348) T protein:vir:93 98 -------------------V-----------HNM--DMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV-RTF-NLTEMQ 143 (348) T ss_pred -------------------E-----------ccc--cEEEecCCCCCCceeeccHHHHHHHHHHHHHHH-HHH-HHHhcC Confidence 0 001 179999876778888998877666555543322 111 233333 Q ss_pred CCceEEeccCCCcCCCC-c--ccce---ecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccc Q lcl|Aclame:pro 296 GLGFYATDSAPPRDSRG-N--MVPW---TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGV 369 (527) Q Consensus 296 g~P~~~~~g~~~~d~~G-~--~~p~---~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~ 369 (527) ..|.+.+.-....+++- + ..-| .-+.|.+.-++.+-+|..++..++-..+.+..+...+.|+.+-++|++-+|. T Consensus 144 ~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~ 223 (348) T protein:vir:93 144 KPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 223 (348) T ss_pred CCceeEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 33333322111111100 0 0001 1245666668888899999976666678888888999999999999999995 Q ss_pred ccccccccHHHH-----HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCH Q lcl|Aclame:pro 370 VDAAVAESGIAL-----DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNN 444 (527) Q Consensus 370 ~d~s~a~SG~AL-----ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~ 444 (527) .+.++-.+-.+. +-.+.|++. .+++. +-..+++..+. .....+.+.+...+-.|. T Consensus 224 ~~~~~~~~~e~~~~~~~~~~l~P~~~-----------~ie~~---l~~~l~~~~~~------~~g~~i~fd~~~l~~~d~ 283 (348) T protein:vir:93 224 RSNTNFAKNEELNRFYLQHTLLPIVK-----------QYEEE---FNRKLLTKTDR------EKNRYFKFNVKSYLRADS 283 (348) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHhhCCcccc------cCcceEEeechhhhccCH Confidence 544332221111 112222222 12221 22222322111 112235566777788899 Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 445 EKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 445 ~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) ++.++...+++++|+++.-++.++| |.+|-+. -.+. .-.. .....|+-+.+...-.|.++ ..++. T Consensus 284 ~~~a~~~~~~~~~G~~T~NE~R~~~----g~~p~~g-gD~~---~~~~---n~~~~~~~~~~~~~~~gg~~-n~~~~ 348 (348) T protein:vir:93 284 ATQAEVYFKAVRSGYYTINDIREWE----DLPPVEG-GDKP---LISG---DLYPIDTPLELRKSLKGGDK-NVNES 348 (348) T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHh----CCCCCCC-cCeE---eecc---cccccccchhhcccccCCCC-CcCCC Confidence 9999999999999999999999987 4444322 1110 0000 00001111111111111111 11111 No 146 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=98.20 E-value=2.7e-06 Score=51.08 Aligned_cols=458 Identities=14% Similarity=0.109 Sum_probs=222.8 Q ss_pred CCCChhhhhhhhHHhhc-ccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAG-EANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~-~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~ 76 (527) |-=+.--|+....-+.. +.. .-.+| +.+++.|.+|..-.- + .-+|+... ..+.|.+-|...+++ T Consensus 1 ~~~~~~~~~~~~~~l~~r~~~-------Lk~~R~~~e~~w~e~~~~tlP~~--~--~~~~~~~~-~~~~~dstg~~a~~~ 68 (515) T protein:vir:70 1 MQDTILEYGGQRSKIPKLWEK-------FSKKRSPYLDRAKHFAKLTLPYL--M--NNKGDNET-SQNGWQGVGAQATNH 68 (515) T ss_pred CcchhhhhcCCHHHHHHHHHH-------HHHhhhHHHHHHHHHHHHhcccc--c--CCCCCccc-ccccccchHHHHHHH Confidence 43333334433332221 111 11123 557888888886631 1 11343332 335788899999999 Q ss_pred hhhhhccC-----cccc-ccCcc-------------hhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEEE Q lcl|Aclame:pro 77 KMRFLGQG-----LKWE-FSKKD-------------AKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLLL 130 (527) Q Consensus 77 ~~~~Lg~~-----~~~~-i~~~~-------------~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i 130 (527) .++.|+.+ .+|| ++..+ ++++++ +..-+.+.|+...+-++=+..++-|-|++++ T Consensus 69 LAa~l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~ 148 (515) T protein:vir:70 69 LANKLAQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGNCLLYK 148 (515) T ss_pred HHHHHHHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCeEEEEE Confidence 88887532 2554 22111 123332 2334557788888888888888889998665 Q ss_pred EecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCccc Q lcl|Aclame:pro 131 IGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAI 207 (527) Q Consensus 131 ~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i 207 (527) |+ ++ + ++.+.-+.|+-..|+. |+|..|+.-..+. .++.=+. .....+.... ..+ ...+ T Consensus 149 --d~-~~---~--~~~~pl~~y~v~~d~~--G~v~~i~rr~~~t~~~l~~~f~~-~~~~~~~~~~--~~~------~~~v 209 (515) T protein:vir:70 149 --PS-KG---A--MSAVPMHHYVVNRDTN--GDLMDVILLQEKALRTFDPATRM-AIEVGMKGKK--CKE------DDNV 209 (515) T ss_pred --eC-CC---C--eEEEEcCeEEEeeCCC--cCeeEEEeeeeccHHHHHHhhhh-hhhhhhhhhh--cCC------CCce Confidence 44 33 2 3445556666666554 6677665322111 1110000 0000000000 000 0111 Q ss_pred e-eeecccccccccccccccccccceeeeccCccc-ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhH Q lcl|Aclame:pro 208 K-YTEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTM 285 (527) Q Consensus 208 ~-~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~l 285 (527) . ++...+... +.. -+..-.++... ..--.|....|++.++=...++++||+|=.++.++=+..||+.- T Consensus 210 ~i~~~v~~~~~--------~~~--~~~~e~d~~~~~~es~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~ 279 (515) T protein:vir:70 210 KLYTHAQYAGE--------GFW--KINQSADDIPVGKESRIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLS 279 (515) T ss_pred EEEEEEEecCC--------Cce--EEEEecCceeeccccccccccCCceeeeeeecCCCCcccchHHHhhHHHHHHHHHH Confidence 1 111111110 000 01111122211 22223345689999998888999999999999999999999988 Q ss_pred HHHHHHHHHhCCceEEeccCCCcCCCCcccceecCC-CeeEecCCCCce--EEeccccChHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 286 TDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISP-LGMVEHGQNNKI--YRVNGVASLEPSQTHMNKAEEAMQQTKGI 362 (527) Q Consensus 286 sd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~p-g~~~el~~~~k~--~~ld~~~~la~~~~~~d~L~~~l~~vs~t 362 (527) -..-..+...-.|++-. + .|+.+++..+.-++ |.++. +..+.+ ..+...+++...++-++.+..+|...==+ T Consensus 280 ~~~l~~~~~a~~p~~lv---~-~~g~~~~~~l~~~~~g~iv~-g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~~ 354 (515) T protein:vir:70 280 EAMARGAALMADIKYLI---R-PGSQTDVDHFVNSGTGEVIT-GVAEDIHIVQLGKYADLTPISAVLEVYTRRIGVIFMM 354 (515) T ss_pred HHHHHHHHHhcCCCeee---C-cccccchhhccccCCceeec-CCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhh Confidence 88888888888886543 1 12334444333333 44433 222222 33334457777777788887777652211 Q ss_pred chhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeC-CCCC Q lcl|Aclame:pro 363 PDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFR-DPKP 441 (527) Q Consensus 363 P~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~-d~lP 441 (527) -. +...|.-.. .|=++. .++++|+..++.++.++..+++.-++........-.. +..-+.+..- ...| T Consensus 355 ~~--l~~rd~~rv---TAtEV~-----~r~~E~~~~LGpv~srL~~Ell~Pli~r~~~~~~p~~-P~~~v~~~~vs~l~~ 423 (515) T protein:vir:70 355 ET--MTRRDAERV---TAVEIQ-----RDALEIEQNMGGVYSLFAMTMQTPIAMWGLQEAGDSF-TSELVDPVIVTGIEA 423 (515) T ss_pred hh--hhccCCccc---cHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCCC-ChhhcccceehhHHH Confidence 00 111121111 133333 7788999999999999887776644433221111111 1111222111 2223 Q ss_pred CCHHHHHHHHHHHHhc------------CCccHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHHH--HhcCcc Q lcl|Aclame:pro 442 VNNEKRFAQLLELWEA------------GLIPAKKLTEELSKIMGFEL----TEEDFRQATEDKKTQGIAQA--EAADPF 503 (527) Q Consensus 442 ~D~~~~i~~~v~l~~a------------Glls~~ta~~~L~~~g~~~~----~e~~~~~~~e~~a~~a~~~~--aa~d~~ 503 (527) --+.+.++.+....+. -++-...+++.+.+++|-+. ++++++++-+. |+.++. .++-. T Consensus 424 L~r~q~~~~i~~~~q~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q---~~~~~~~~~~~~~- 499 (515) T protein:vir:70 424 LGRMAELDKLANFAQYMSLPQTWPEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQ---QAQAQQEAMLNEG- 499 (515) T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHH---HHHHHHHHHHHHh- Confidence 3344444443322221 12555667777777877555 55555554222 222221 11111 Q ss_pred cccccccCCCCcccccc Q lcl|Aclame:pro 504 GAQMAAEQGIPDEEDDQ 520 (527) Q Consensus 504 g~~~~~d~g~~d~~~~~ 520 (527) +--++++++.|..-.. T Consensus 500 -~~~a~~~~~~~~~~~~ 515 (515) T protein:vir:70 500 -VAKAVPGVIQQEMKEG 515 (515) T ss_pred -hhhhcccchhhhhccC Confidence 1112223333322211 No 147 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=98.17 E-value=3.1e-06 Score=50.77 Aligned_cols=416 Identities=13% Similarity=0.092 Sum_probs=180.5 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |++=.+ ||.+... ..++..+.+....|........+....-..|- .+++-....+| +|-.+|-..++- T Consensus 1 Mg~~~~-------l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~-~~~al~~~~v~--~~i~~ia~~iA~ 68 (457) T protein:vir:62 1 MGFWSA-------LFGRGHS--PALDAAEGRAWEPYDPSIYNLGATASSGERVT-PHDALQVSAVF--ASVRLLSETIAT 68 (457) T ss_pred Cchhhh-------hhccccc--cccccccccccccchhhhhhccccccCCceec-hHHhhccHHHH--HHHHHHHHhHhh Confidence 664321 2222211 22222333333333333222222211111110 01110001111 122222222221 Q ss_pred hccCccccc---cCcc-hhHHH-HHHHHHHhc-C-c--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccce Q lcl|Aclame:pro 81 LGQGLKWEF---SKKD-AKVDD-AIRVLFDRE-N-W--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPST 151 (527) Q Consensus 81 Lg~~~~~~i---~~~~-~~v~~-~lr~w~~~e-~-l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~ 151 (527) | +..+ +..+ ..++. .+..+..+. + | ..-+.......++.|.|+..|.++. + +=+.+..++|.. T Consensus 69 l----p~~~~~~~~~~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~~--g--~~~~l~~l~p~~ 140 (457) T protein:vir:62 69 L----PLSTYSKRGGTRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWAG--P--NIAGLDVLDPTK 140 (457) T ss_pred C----ceEEEEecCCccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeCC--C--cEEEEEEEcCcc Confidence 1 1111 1111 11111 122222111 1 1 1233445556777899988888773 2 233456677766 Q ss_pred EEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccc Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDD 231 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~ 231 (527) +-+..+.++.. . .++ ...|. +...|. .... T Consensus 141 v~v~~~~~~~~--~-----------------~~~--~~~y~--~~~~g~-------~~~~-------------------- 170 (457) T protein:vir:62 141 IHVHMVMVDGL--R-----------------RKV--FEAYD--IDADGN-------EVLL-------------------- 170 (457) T ss_pred eEEEEeccCCc--c-----------------cee--EEEEE--EccCCc-------eeEE-------------------- Confidence 55443222110 0 000 00110 000000 0000 Q ss_pred eeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC Q lcl|Aclame:pro 232 IKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR 311 (527) Q Consensus 232 ~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~ 311 (527) .... + + =|+||++..+++...|.|-++-+...+......-.-......-.+.|-.+++-....++. T Consensus 171 -~~~~--------~---~--eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e 236 (457) T protein:vir:62 171 -GWFT--------P---R--DVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEE 236 (457) T ss_pred -EeeC--------c---c--ceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCCCHH Confidence 0000 0 0 178998876777788998877666555544443333333334456664333221112210 Q ss_pred C-c-c-ccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc-ccHHH- Q lcl|Aclame:pro 312 G-N-M-VPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA-ESGIA- 380 (527) Q Consensus 312 G-~-~-~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a-~SG~A- 380 (527) - + . ..|+ -+-|.+.-|+.+-+|..+...+.-..+.+..+...+.|+.+=++|++-+|.++.++. -|.++ T Consensus 237 ~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq 316 (457) T protein:vir:62 237 GLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) T ss_pred HHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHH Confidence 0 0 0 0111 113556668888899999977666677888888899999999999999996654321 12221 Q ss_pred -----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 381 -----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 381 -----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) ++-.+.|++. .+++.+ -..++...+ .....+.+.+...+-.|.++.++...+++ T Consensus 317 ~~~~f~~~~l~P~~~-----------~ie~~l---n~~L~~~~~-------~~~~~i~fd~~~l~~~d~~~r~~~~~~~~ 375 (457) T protein:vir:62 317 QNIAFTMFSLRPWLE-----------RIEAGF---NRLLFAETA-------DRFRFVKFNLDEIKRGAPKERMELWSLGL 375 (457) T ss_pred HHHHHHHHHHHHHHH-----------HHHHHH---HhhhcCccc-------cCceEEEeechhhhccCHHHHHHHHHHHH Confidence 1112222221 222221 111121111 12234666777888889999999999999 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHH-HHHHH---------HHHHHHHHHHHHhcCcc------cccccccCCCCccccc Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEED-FRQAT---------EDKKTQGIAQAEAADPF------GAQMAAEQGIPDEEDD 519 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~-~~~~~---------e~~a~~a~~~~aa~d~~------g~~~~~d~g~~d~~~~ 519 (527) ++|+++.-++.+++ |.+|-++- ..+.. ............+.++. +..-.+.+|.||+++- T Consensus 376 ~~G~~T~NE~R~~~----gl~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 451 (457) T protein:vir:62 376 QNGIYSIDEVRAAE----DMTPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGET 451 (457) T ss_pred hCCCcCHHHHHHHh----CCCCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccccc Confidence 99999999999876 44443321 00000 00000000000011110 0111344555544443 Q ss_pred ccCCCC Q lcl|Aclame:pro 520 QALNGQ 525 (527) Q Consensus 520 ~~~~~~ 525 (527) ++.--. T Consensus 452 ~~~~~~ 457 (457) T protein:vir:62 452 EDDDDA 457 (457) T ss_pred cccccC Confidence 333333 No 148 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=98.08 E-value=5.1e-06 Score=49.58 Aligned_cols=415 Identities=13% Similarity=0.098 Sum_probs=175.9 Q ss_pred CCCChhhhhhhhH-HhhcccC------CCCCCCh----HHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQ-LRAGEAN------FPNAVTD----FDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy~~~~~-~~~~~~~------~~~~v~~----~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~ 69 (527) |- .|=....| +..|+.. +..+.-. .+.++=+.+++|+++=.. | +- T Consensus 1 ~~---~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~ly~~m~e~------------D---------~~ 56 (469) T protein:vir:10 1 MT---ERVKTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAVYSRMDNE------------D---------SR 56 (469) T ss_pred CC---CcccCCCCccchhhhhhcccccchhhccccccccccccccchHHHHHHHhh------------C---------hH Confidence 20 00011111 1222211 0011110 112222333333333210 1 11 Q ss_pred hhHHHHhhhhhhccCccccccCcch--h----HHHHHHHHHHhc-------------CchhhHHHHhHhhhhcccEEEEE Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKKDA--K----VDDAIRVLFDRE-------------NWEQKFESLKRWTEIRGDYVLLL 130 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~~~--~----v~~~lr~w~~~e-------------~l~~k~~~~~r~a~~~GDav~~i 130 (527) -.-.+++....+ .+.+|.|.-+++ + +.+.|+.++... .+...+.+.--.|+..|=+|+-+ T Consensus 57 i~s~l~~rk~av-~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Ei 135 (469) T protein:vir:10 57 VTSLLEAISLPI-RSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQ 135 (469) T ss_pred HHHHHHHHHHHH-hcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeee Confidence 223555544444 455887754432 2 344444433211 12233444445577789999999 Q ss_pred EecCCCC-CccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCcccee Q lcl|Aclame:pro 131 IGDDEKD-EGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY 209 (527) Q Consensus 131 ~~d~~k~-~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~ 209 (527) .|..... ...++.+..+-|. | ...+.+.. ..+++.. +.. T Consensus 136 vw~~~~~~~dG~~~~~~l~~r-------p--~~~i~~~~-----~~~~~~l--------------------------~~~ 175 (469) T protein:vir:10 136 VYRPRNQSPDGRFWLRKLAPR-------P--QWTISKFN-----VAPDGGL--------------------------ESI 175 (469) T ss_pred eeecccccCCCceeeeeeeec-------C--cccceeee-----eccCCce--------------------------eee Confidence 9985321 0112322222111 0 00011110 0111110 000 Q ss_pred eecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHH Q lcl|Aclame:pro 210 TEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDED 289 (527) Q Consensus 210 ~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~ 289 (527) +...+....-. .....+.....|| |-.||-.+| .+..+.++|.+-|..+-...---|..+.+.. T Consensus 176 ~~~~~~~~~~~------------~~~~~~~~~~~lp-~~k~i~~~~---~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~ 239 (469) T protein:vir:10 176 EQIAPPARTRG------------SLYVANIAPPEIP-VNRLVVYTR---NKRPGQWQGKSILRSAYKHWLLKDKLLRIEA 239 (469) T ss_pred eecCccccccc------------ccccCCCCccccc-cCcEEEEEe---cCCCCCcccchhHHHHHHHHHHHHHHHHHHH Confidence 00000000000 0000000011122 334443333 3466889999999998888888888999999 Q ss_pred HHHHHhCCceEEeccCCC-cCCCCc-c--c--ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 290 LIMVFGGLGFYATDSAPP-RDSRGN-M--V--PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 290 ~i~~~~g~P~~~~~g~~~-~d~~G~-~--~--p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) ..++..|.|+.+..-.+. .+.+-+ . . -+.-+-...+-++++.++..+....+...|...+++..++|+.+. T Consensus 240 ~f~EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~~a~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~i--- 316 (469) T protein:vir:10 240 ATAERNGMGIPVGTASSATDEDEVRKMAALARSVRGGINAGVGLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSG--- 316 (469) T ss_pred HHHHHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCCceEEEccCCceEEEeecCCCchHHHHHHHHHHHHHHHHH--- Confidence 999999999876543221 111100 0 0 111122333348899999999987788889999999999988754 Q ss_pred hhhcccccccc-cccHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhcccccccceeEEEEeCCCC Q lcl|Aclame:pro 364 DIAVGVVDAAV-AESGIALDL-KLSAILSSCAEQELELKSVLKQFFY-NLVTQWLPAYEGVGIDDADKKLTVTITFRDPK 440 (527) Q Consensus 364 ~va~G~~d~s~-a~SG~ALql-~~~PLlakv~~krl~~~~~~~q~~~-~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~l 440 (527) +|.+-.+- .-+.+|+-- ...-....++. ..+.+...++ .++..++ .+-+. .....+.++|...- T Consensus 317 ---LG~tlTs~~~gGS~a~~~vh~ev~~d~~~s----Da~~i~~tln~~li~~l~----~lN~g--~~~~~P~~~~~~~e 383 (469) T protein:vir:10 317 ---LAHFLNLDGKGGSYALASVLEDPFTQAVHA----YATSICRIANQHIIEDLV----DINFG--VDTPAPVLTFDPIG 383 (469) T ss_pred ---hcccccccCccchhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HhcCC--CCCCccEEEecCCC Confidence 34332221 112334321 11111111111 1112222222 2333222 22222 22233577887654 Q ss_pred CCCHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc Q lcl|Aclame:pro 441 PVNNEKRFAQLLELWEAGLIP-----AKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) Q Consensus 441 P~D~~~~i~~~v~l~~aGlls-----~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d 515 (527) .+.+..++.+.+|.+.|++. .+...+++ |.+.+.++.. .++..+. .+....+. .+++..+ T Consensus 384 -~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~----gip~~~~~~~-~~~~~~~-----~~~~~~~~---~~~~~~~- 448 (469) T protein:vir:10 384 -SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRF----NLPSELNDTP-SAEPEEP-----AAVPNQSA---APARTRS- 448 (469) T ss_pred -CcHHHHHHHHHHHHhcCCccCccccHHHHHHHh----CCCCCCCCcc-cccchhc-----ccCCCCCc---cccccCC- Confidence 45566788889999999943 33344433 5555444322 2222111 11111111 1111111 Q ss_pred ccccccCCCCCC Q lcl|Aclame:pro 516 EEDDQALNGQPL 527 (527) Q Consensus 516 ~~~~~~~~~~~~ 527 (527) ...++...+.|. T Consensus 449 ~~~~~~~~~~~~ 460 (469) T protein:vir:10 449 SGNADARARAPK 460 (469) T ss_pred CCCcccccccCC Confidence 111111122222 No 149 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=98.08 E-value=5.2e-06 Score=49.55 Aligned_cols=458 Identities=12% Similarity=0.085 Sum_probs=224.3 Q ss_pred CCCChhh-hhhhhHHh-hcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQ-YGSTQQLR-AGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~~~~q-y~~~~~~~-~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~ 75 (527) |...++| ++.+..-+ +.+.. -...| +.+++.|.+|..-+- + .-+|+.. ...+.|.+-|.+.++ T Consensus 1 ~~~~~~~~~~~~~~~l~~r~~~-------L~~~R~~~e~~w~e~a~~~lP~~--~--~~~~~~~-~~~~~~dstg~~a~~ 68 (516) T protein:vir:96 1 MKQSIDLEYGGKRSKIPKLWEK-------FSNKRSSFLDRAKHYSKLTLPYL--M--NDKGDNE-TSQNGWQGVGAQATN 68 (516) T ss_pred CcchhhhhhhhhHHHHHHHHHH-------HHHHhhHHHHHHHHHHHhhcccc--c--CCCCCcc-ccCCcccchHHHHHH Confidence 7777665 34333333 23333 12223 678899999987631 1 1123332 334678899999999 Q ss_pred hhhhhhccC-----cccc-ccC-------------cchhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEE Q lcl|Aclame:pro 76 AKMRFLGQG-----LKWE-FSK-------------KDAKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLL 129 (527) Q Consensus 76 ~~~~~Lg~~-----~~~~-i~~-------------~~~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~ 129 (527) +.++-|+.+ .+|| ++. +.++|+++ +..-+.+.|+...+-++=+..++-|-|+++ T Consensus 69 ~LAa~l~~~ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~ 148 (516) T protein:vir:96 69 HLANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCMLY 148 (516) T ss_pred HHHHHHHhhhcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeEE Confidence 988887532 2454 221 11234443 444666889999999988998889999865 Q ss_pred EEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEE---eeeCCCCccceeeeeeeeeeeeeecCCccccCCcc Q lcl|Aclame:pro 130 LIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVD---EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGA 206 (527) Q Consensus 130 i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~---~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~ 206 (527) + |+ ++ + ++.+.-+.|+-..|.. |+|..|+.-. ....+++- ..+ +.+....... .| ... T Consensus 149 ~--d~-~~---~--~~~~pl~~y~v~~d~~--G~v~~i~rr~~~~~~~l~~~~---~~~--~~~~~~~~~~--~~--~~~ 209 (516) T protein:vir:96 149 K--PS-KG---A--ISAIPMHHYVVNRDTN--GDLLDIILLQEKALRTFDPAT---RAV--VEVGLKGKKC--KE--DDS 209 (516) T ss_pred e--cC-CC---C--EEEEEcCeEEEeeCCC--CCeeeehhhhHhhHHHHHHhh---hhh--hhhhhhhhhc--CC--CCc Confidence 5 43 32 3 3455556666666655 4566654211 01111100 000 0000000000 00 111 Q ss_pred cee-eecccccccccccccccccccceeeeccCccc-ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhh Q lcl|Aclame:pro 207 IKY-TEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQT 284 (527) Q Consensus 207 i~~-~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~ 284 (527) +.. +...|...+. + -+....++.+. ..--.|....|++.++=...++++||+|=.++.++=+..||+. T Consensus 210 v~v~~~v~~~~~~~-------~---~~~~~~d~~~~~~es~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l 279 (516) T protein:vir:96 210 VKLYTHAKYLGDGF-------W---ELKQSADDIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFL 279 (516) T ss_pred eEEEEeeeeeCCce-------e---EEEEEeCceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHH Confidence 111 1112221110 0 01111122222 1122344568999999988999999999999999999999887 Q ss_pred HHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCC-CeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 285 MTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISP-LGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGI 362 (527) Q Consensus 285 lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~p-g~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~t 362 (527) --..-..+.....|++-. +| ++..++..+.-++ |.++.-..++ +..++...+++...++-++.+..+|...==+ T Consensus 280 ~~~~l~~~~~a~~~~~lv---~p-~g~~~~~~l~~~~~g~i~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~ 355 (516) T protein:vir:96 280 SEAVARGAALMADIKYLI---RP-GAQTDVDHFVNSGTGEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMM 355 (516) T ss_pred HHHHHHHHHHhcCCcccc---Cc-ccccchhhhccCCCceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHHHHhh Confidence 777777777777776432 11 2223333333222 4443222221 2344444457777788888888877663211 Q ss_pred chhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeC-CCCC Q lcl|Aclame:pro 363 PDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFR-DPKP 441 (527) Q Consensus 363 P~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~-d~lP 441 (527) - .+...|.... .|=+ +..++++|+..++.++.++..+++.-++.+.-....- ...+.-+.++.- ...| T Consensus 356 ~--~l~~r~~~rv---TAtE-----V~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~~p-~lp~~~v~~~~vs~l~~ 424 (516) T protein:vir:96 356 E--TMTRRDAERV---TAVE-----IQRDALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGE-SFTSDLVDPVIITGIEA 424 (516) T ss_pred h--hhccCCCccc---cHHH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCC-CCccccccceeechHHH Confidence 0 1111122111 1333 3378899999999999998887766554432222111 111111222211 1112 Q ss_pred CCHHHHHHHHHHHHh-----c-------CCccHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHHHHhcCccc- Q lcl|Aclame:pro 442 VNNEKRFAQLLELWE-----A-------GLIPAKKLTEELSKIMGFEL----TEEDFRQATEDKKTQGIAQAEAADPFG- 504 (527) Q Consensus 442 ~D~~~~i~~~v~l~~-----a-------Glls~~ta~~~L~~~g~~~~----~e~~~~~~~e~~a~~a~~~~aa~d~~g- 504 (527) --+.+.++.+....+ + -.|-.+.+++.+.++.|.+. +.+++.+..+-...++ ..+.++...| T Consensus 425 l~r~~~~~~i~~~~~~i~~~~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q-~~~~~a~~~~~ 503 (516) T protein:vir:96 425 LGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQ-QAQMLEEGVAK 503 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHH-HHHHHHHHhhh Confidence 222233332222111 1 22556788888888887665 3333333211111111 1111122211 Q ss_pred --ccccccCCCCc Q lcl|Aclame:pro 505 --AQMAAEQGIPD 515 (527) Q Consensus 505 --~~~~~d~g~~d 515 (527) ...+++.+-+- T Consensus 504 ~~~~~~~~~~~~~ 516 (516) T protein:vir:96 504 AVPGVIQQELKEA 516 (516) T ss_pred hhhHHhhcccccC Confidence 11122222211 No 150 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=97.94 E-value=1e-05 Score=47.95 Aligned_cols=495 Identities=10% Similarity=0.003 Sum_probs=223.5 Q ss_pred CCCChhh-------hhhhhHHhhcccCCCCCCChHHHHHHH--HHHHHHHH----hcCChhheEeeecCCcccccccccC Q lcl|Aclame:pro 1 MGQDKRQ-------YGSTQQLRAGEANFPNAVTDFDKARLA--SYRLYEDM----YLTNTSDYQVILRGGDEGDQRPIYV 67 (527) Q Consensus 1 m~~~~~q-------y~~~~~~~~~~~~~~~~v~~~d~~Rl~--aY~~~~~~----y~~~~~~~~~i~~g~d~~~~~~~~~ 67 (527) |....+- |+..-+|..--.+ -|-.-+++|+.+ -.+.+.+| .+-+++. .++-=.-.++. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~r~~~~~~w~e~~~yi~~~~tr~t~~-------~~~~w~~s~t~ 71 (599) T protein:vir:31 1 MSTDIKTLQKMLEGRDDDRAFIDELVV--LFTNMENARAQKDREDKELMDYIDATDTRKTSN-------SKLPFKNSTTI 71 (599) T ss_pred CccchHHHHHHhhccCchHHHHHHHHH--HHHhhhhhhhhhhcccHHHHHHHhhhccccccc-------CCCCcccccch Confidence 7766543 4444444111000 011112333321 22333333 2221111 11111234566 Q ss_pred CchhHHHHhhhhhhc-cCc---ccc---ccCc---chhHHHHHHHH----HHhcCchhhHHHHhHhhhhcccEEEEEEec Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLG-QGL---KWE---FSKK---DAKVDDAIRVL----FDRENWEQKFESLKRWTEIRGDYVLLLIGD 133 (527) Q Consensus 68 p~~~k~v~~~~~~Lg-~~~---~~~---i~~~---~~~v~~~lr~w----~~~e~l~~k~~~~~r~a~~~GDav~~i~~d 133 (527) |-.--++++.+.+++ .-| .|+ .-.+ .++..+..+.+ ...+++.--|...-++-+++|-+|=++.|- T Consensus 72 ~k~~~~~~~l~a~~~~~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~Kl~e~~~~~~~~~~v~d~i~~G~~vat~~~e 151 (599) T protein:vir:31 72 NKLAHLHLMITTSYMEHLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGKVEASNLEGVIERMVDDFAVRGFCVAHTRHV 151 (599) T ss_pred HHHHHHHHHHHHHHHhhhcCCccceEeeecCCchhHHHHHHHHHHHhhhhhhhcchHHHHHHHHhhhcccCceeEeeeEE Confidence 666678999777763 222 221 1111 23334444443 223456777889999999999887665543 Q ss_pred ---------CCCCCccceEEEEEccceEEEE---ecCCCCCceEEEEEEE-----eeeCCCCc-----cceee-eeee-- Q lcl|Aclame:pro 134 ---------DEKDEGSRLSLHEVDPSTYFPY---EDPRYPGQVLGVYLVD-----EYPHPDSE-----KKNEK-CARV-- 188 (527) Q Consensus 134 ---------~~k~~~~r~~i~~vdP~~~fp~---~d~d~~~~v~~vh~a~-----~~~~pd~~-----~~~~k-~~rr-- 188 (527) +....-.+|+++.+.|.-+||- .+.++...+++..+-. .-..+-.+ ...+. ..+| T Consensus 152 r~~~~~~d~~v~~~~~~P~~ervsP~Di~~Dp~A~si~d~~fivRs~~Tk~~L~~l~~~~~~~~y~~d~~~~~~~~~~~~ 231 (599) T protein:vir:31 152 KRMTVTAENQVIKNYSGTVTERLSPSDVFWDVTADSLPKAAKCIRQLYTLGSLKREIEEGTFPLMSMEDFQKLREERRTI 231 (599) T ss_pred EcceeecccccccccccceEEeecccceeeCCCCCCCCcceeeeehhhhHHHHHHHhccCCccccchHHHHHHHhhccCC Confidence 2222223688999999988883 3333222333333200 00000000 00000 0011 Q ss_pred -----eeeeeeecCCc-----------cccCCccceeeecccccc-cccccccccccccceeeeccCc---ccccccccc Q lcl|Aclame:pro 189 -----QKYMKTLDDDG-----------KPVPGGAIKYTEELYEPG-KWDDRPESPLEPDDIKKLSTLT---EEEPLPEQI 248 (527) Q Consensus 189 -----~~~~~~~~~~g-----------~p~~~g~i~~~~~~~~~g-~wd~~~~~~~~~~~~~~~~~~~---~e~~l~~pi 248 (527) -.|.+...-++ ++.+ +-|+ ....| | -|+.+.+..++. -+..+.+.. ..+..|.|- T Consensus 232 ~~~~~d~~~~~~g~D~~~~d~~~~~~eY~~~-~~Ve-vLeyw--Gd~ydee~d~~~~~-~ViTi~g~~~liR~e~np~~~ 306 (599) T protein:vir:31 232 REALADGYNGRRKFDSLHKKGYGSMMNYINE-GVVE-VLTFM--GDFYDEENDELWNN-YEITVIDRKIIGRKQSKDTWD 306 (599) T ss_pred Cccccchhhhhhhccccccccccchhhhccc-chhh-hhhhh--hhhhcccCCccccc-eEEEEecCcEEeecccCCCCC Confidence 00100000000 0000 0000 11133 2 245554443322 234444433 457788888 Q ss_pred cccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccC-CCcCCCCcccceecCCCeeEec Q lcl|Aclame:pro 249 TTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSA-PPRDSRGNMVPWTISPLGMVEH 327 (527) Q Consensus 249 ~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~-~~~d~~G~~~p~~v~pg~~~el 327 (527) +..|+|+..-.|...+.||...|..+..+++.||.+---.-...+.+..|++...+. .+. ++.=+||.+|.. T Consensus 307 g~~Pyvv~~~~P~~~~~yG~G~l~~~~gaQ~~lN~~~Ng~iD~~~~~l~p~l~~~~dl~~e-------D~~~~P~~v~~~ 379 (599) T protein:vir:31 307 GSQNLHIAVYEFQKDTLCPIGPLHRLTGMQYKLDKRENFREDLHDRFLHPSLKKVGDVREK-------GMRGGPNHVFEV 379 (599) T ss_pred CCCCeEEEEeeeeccccCCCCCchhcchHHHHHHHHHHHhhhhhhhhhccccccccccccc-------CccCCCCcceee Confidence 889999999999999999999999999999999998666666677787887776443 332 333458999999 Q ss_pred CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHH-HHHHHH Q lcl|Aclame:pro 328 GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELK-SVLKQF 406 (527) Q Consensus 328 ~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~-~~~~q~ 406 (527) .+.+.+..+.-.++......-+..+...+.+.|++|+.+.|---++ .+--..+++.+...-....++-.+|- .+++.+ T Consensus 380 ~d~~~vq~~~p~s~~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag-~~TA~~is~l~naa~~~~~~~vr~~e~~~lepl 458 (599) T protein:vir:31 380 EETGDVQYMTPPAEVLQPDNQLSITLQLMEDLSGAPKESIGQRTAG-EKTKFEVQLLDQGQNKVFRRKVKKFERELLTPV 458 (599) T ss_pred cCCCccccccCchhhhhHHHHHHHHHHHHHHhhccchhhcCCcccc-hhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH Confidence 9999887666545556666667777788999999999999933221 12112233333322222111111222 222334 Q ss_pred HHHHHHHHHhhhhhh---cccccc----ccee---------EEEE-eCCCCCCCHHHHHHHHHHHHhcCC---ccHHHHH Q lcl|Aclame:pro 407 FYNLVTQWLPAYEGV---GIDDAD----KKLT---------VTIT-FRDPKPVNNEKRFAQLLELWEAGL---IPAKKLT 466 (527) Q Consensus 407 ~~~li~~~L~~~e~v---~~~~~~----~~~~---------v~v~-w~d~lP~D~~~~i~~~v~l~~aGl---ls~~ta~ 466 (527) .+.++.......... ...... ..+. +.++ =+.-.=..+++-+++.+...++-+ +-..++. T Consensus 459 l~~l~e~~~~f~D~~~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v~ere~~~q~l~~il~~~~~q~~~P~~~~ 538 (599) T protein:vir:31 459 LNDYLEQGRNHLDASDTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLFAEKANTLQNLNAILGGPLGAALAPHMSR 538 (599) T ss_pred HHHHHHHHHhhcccccceeeecccccceeeEEeehhhhhCCeeeeechhhHHHHHHHHHHHHHHHhcccCCCccchhhHH Confidence 333333222111110 000000 0000 0110 011011235555666666664411 2222222 Q ss_pred HHHHH-------hc--CCCCchHHHHHHHHHHHHHHHHHHHh-cCcccccccccCCCCcccccc Q lcl|Aclame:pro 467 EELSK-------IM--GFELTEEDFRQATEDKKTQGIAQAEA-ADPFGAQMAAEQGIPDEEDDQ 520 (527) Q Consensus 467 ~~L~~-------~g--~~~~~e~~~~~~~e~~a~~a~~~~aa-~d~~g~~~~~d~g~~d~~~~~ 520 (527) ++|.+ +. +.+.+.- ..++.+-.++++.++..+ .-+-=-+.+ =|.|-...-| T Consensus 539 k~l~~~l~~~~~l~~~~~~~~~v-a~~eqq~~~~m~Q~~lq~~~~~~~~~~~--~~~~~~~~~~ 599 (599) T protein:vir:31 539 TKLFNAVEYLGDLDAYGIFTFGI-GVQEDQQLARMAQKSTQQTEETALTQEE--VGGPTTDTGQ 599 (599) T ss_pred HHHHHHHHHHHhccccccCCCch-hHHHHHHHHHHHHHHHHHhHhhhhhhhh--cCCCCcccCC Confidence 22211 11 1111111 122223333333322211 111000111 1223111111 No 151 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=97.86 E-value=1.4e-05 Score=47.17 Aligned_cols=372 Identities=11% Similarity=0.047 Sum_probs=165.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhh-eEeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSD-YQVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~-~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |.+=.+- ..... ...+.. =...++....+. ..+. ...|. ..++-.. ..|.+++. T Consensus 1 M~~f~~~--------~~~~~-~~~~~~-----~~~~~~~~~~~~-~~~~~~~~v~-~~~al~~---------~~v~~~i~ 55 (386) T protein:vir:49 1 MPIFNIT--------NLATE-SPPINQ-----ESFFDIADSDFL-ASLNSSEWVS-AENALKN---------SDLFSIIS 55 (386) T ss_pred Cchhhhh--------ccCCC-Ccccch-----hhhhhhhhcccc-ccccCCceec-hhhhhcc---------HHHHHHHH Confidence 5543221 11000 000000 000111111111 1110 00010 1111010 12223323 Q ss_pred hhcc---CccccccCcchhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 80 FLGQ---GLKWEFSKKDAKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 80 ~Lg~---~~~~~i~~~~~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) .+.- ..+..+.... .+..+ ++-| +. .-........+..|.|+..|.+|. .|+-+.+..++|..+ T Consensus 56 ~ia~~ia~~p~~~~~~~--~~~l~----~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~---~g~~~~l~~i~~~~v 126 (386) T protein:vir:49 56 QLSNDLATAKITTSRKQ--LQGIV----DNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRND---NGRDMKWEYLRPSQV 126 (386) T ss_pred HHHHHhhhCceeeccch--hhhhh----hccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC---CCcEEEEEEecCcee Confidence 3211 1122222111 11111 1111 11 222344556677899988888875 244556777887776 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccce Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) =+..+++... ..+++++ .+.+ +....+ T Consensus 127 ~v~~~~~~~~----------------------~~y~~~~----~~~~-----~~~~~~---------------------- 153 (386) T protein:vir:49 127 SFNRLDNQNG----------------------LYYNITF----DDPH-----IAPKQH---------------------- 153 (386) T ss_pred EEEEcCCCce----------------------EEEEEEE----cCcc-----ccceeE---------------------- Confidence 5544333110 0011110 0000 000000 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe--ccCCCcCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT--DSAPPRDS 310 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~--~g~~~~d~ 310 (527) + + -+ =|+||++..+.+...|.|-|.-+...+.-.+....-......-.+.|-..+ .+....+. T Consensus 154 --~---------~--~~--evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~ 218 (386) T protein:vir:49 154 --V---------P--QN--DILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDF 218 (386) T ss_pred --E---------c--cc--cEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHH Confidence 0 0 00 189999877777788999888877777655443333333334455675443 33221110 Q ss_pred CCcc----cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhc Q lcl|Aclame:pro 311 RGNM----VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLS 386 (527) Q Consensus 311 ~G~~----~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~ 386 (527) .-+. ....-..|.++-++.+-+|..+...++-..+.+..+...+.|+..-++|+.-+|....+.. ++-..+..+. T Consensus 219 ~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~-~~~~~~~~~~ 297 (386) T protein:vir:49 219 KTKVSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGDQQS-SLEMIYNIYF 297 (386) T ss_pred HHHHHHHHHHhccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc-hHHHHHHHHH Confidence 0000 0111235666668888899999887777888899999999999999999999984322221 2212221111 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHH Q lcl|Aclame:pro 387 AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLT 466 (527) Q Consensus 387 PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~ 466 (527) ..+.. ++..|...++..+... +.+.....+-.|..+....+.+|..+|+++.-++. T Consensus 298 --------------~~i~~----~l~~i~~~~~~~l~~~------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r 353 (386) T protein:vir:49 298 --------------KSVSR----YLRPFVSEMSKKLSCE------VDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGL 353 (386) T ss_pred --------------HHHHH----HHHHHHHHHHHHhcch------hcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHH Confidence 11111 1111111111111111 12223333445667778888899999999999999 Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 467 EELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 467 ~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) ++|...|. .+. ++... -++.-.. -.+|..++++ T Consensus 354 ~~l~~~~~-~~~--~~~~~--------------~~~~~~~--~~gGd~~~~~ 386 (386) T protein:vir:49 354 YILQQAEI-LPK--ELPDG--------------KNPNRTS--LKGGEINEQD 386 (386) T ss_pred HHHhhCCC-CCC--cCcch--------------hccCCCC--CCCCCCCCCC Confidence 98876653 222 22111 0111101 1123333322 No 152 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=97.86 E-value=1.4e-05 Score=47.13 Aligned_cols=395 Identities=11% Similarity=0.094 Sum_probs=186.6 Q ss_pred CC-CChhh--hhhhhHHhhcccCCCCCCChH-HHHHHHH---HHHHHHHhcCChhheEeeecCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MG-QDKRQ--YGSTQQLRAGEANFPNAVTDF-DKARLAS---YRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~-~~~~q--y~~~~~~~~~~~~~~~~v~~~-d~~Rl~a---Y~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~ 73 (527) .| .+.-+ =....+++.++.. +..+++ +-=|.+. +++|.++.. |. --.-. T Consensus 3 ~~~l~~e~at~~~~~d~~~~~~~--~l~~~~~~il~~a~~g~~~~y~~l~~-------------D~---------~i~s~ 58 (488) T protein:vir:99 3 KPALGREIATSGDGRDITRPFIS--GLQVPNDSILQRRGGNDLRVYEEILS-------------DA---------QVKTV 58 (488) T ss_pred ccchhHHHHHHHhhhhhhccccC--CCCCCChHHHHhhccCCHHHHHHHhh-------------Ch---------HHHHH Confidence 11 11110 0001122222221 222221 2212122 334444331 11 12245 Q ss_pred HHhhhhhhccCccccccCcch-----hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 74 IEAKMRFLGQGLKWEFSKKDA-----KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 74 v~~~~~~Lg~~~~~~i~~~~~-----~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) +++..+-+ .+.+|.|..++. +..++++.|+++-.|+.-+...- +|+..|-+|+-+.|... +.++.++.+. T Consensus 59 l~~rk~av-~~~~w~i~p~~~~~~~~~~ae~v~~~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~---~g~~~~~~l~ 133 (488) T protein:vir:99 59 WGQRQLAV-VSREWKVEAGGDRPIDQAAAEHLEQQLQRVGWDRVTSKML-FGVFYGYAVSELIYGRD---DRYITLEAIK 133 (488) T ss_pred HHHHHHHH-hcCCceEEcCCCChHHHHHHHHHHHHHhCCCHHHHHHHHH-hhhhhcceeEEEEEeec---CCeeeEeeee Confidence 66644444 566898865543 24567788887655665555554 68889999999999752 2233221111 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |+.| ++..| +.++.. . T Consensus 134 ------------------------~r~~----------~~f~~----d~~~~l------~-------------------- 149 (488) T protein:vir:99 134 ------------------------VRNR----------RRFRY----DQDGGL------R-------------------- 149 (488) T ss_pred ------------------------eecc----------cceee----cCCCce------E-------------------- Confidence 1111 00010 000000 0 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCC-- Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAP-- 306 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~-- 306 (527) +........-.++|.|..|| ||..+. .++.+||.+-|..+....---+..+.+....++..|.|+....-.+ T Consensus 150 ---~~~~~~~~~g~~lp~~~~~i--~~~~~~-~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~ 223 (488) T protein:vir:99 150 ---LLTPNNMFEGEPCPAPYFWH--FSTGAD-NDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKT 223 (488) T ss_pred ---EeccCCCCCccccccCceEE--EEeecC-CCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCC Confidence 00000001123455566665 444333 4589999999999888877888899999999999999986654221 Q ss_pred CcCCCC-cc--cceecCCCeeEecCCCCceEEecccc-ChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccH-HHH Q lcl|Aclame:pro 307 PRDSRG-NM--VPWTISPLGMVEHGQNNKIYRVNGVA-SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESG-IAL 381 (527) Q Consensus 307 ~~d~~G-~~--~p~~v~pg~~~el~~~~k~~~ld~~~-~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG-~AL 381 (527) ..+.+- .. .-..++-....=+|.+.++..+.... +...|.+.+++..++|+.+ .+|.+-.|.+.+| +|+ T Consensus 224 a~~~ek~~l~~av~~~~~~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~------iLGqtlts~~~~Gs~a~ 297 (488) T protein:vir:99 224 ATPEDKAKLLAALHAIQTDSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKV------GLGQVASTQGTPGRLGN 297 (488) T ss_pred CCHHHHHHHHHHHHHHhcCcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHH------Hhhhhhcccccccchhh Confidence 122111 11 11224445555578889999888433 4456899999999999875 4454433333332 343 Q ss_pred H-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc-CC Q lcl|Aclame:pro 382 D-LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA-GL 459 (527) Q Consensus 382 q-l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a-Gl 459 (527) - ....-....++.-...+...+ ++.++..+ -.+-+... ....++|...-|.|.++.++.+.+|... |+ T Consensus 298 ~~vh~~v~~d~~~aDa~~i~~tl---n~~li~~l----~~~N~~~~---~~p~~~~~~~e~edl~~~a~~~~~l~~~~G~ 367 (488) T protein:vir:99 298 DDLQADVRLDLVKADADLICESF---NLGPARWL----TEWNFPGA---QPPRVYRVIEEPEDITAKAERDEKVFRMSGF 367 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----HHhCcCCc---CCceeEecCCCcccHHHHHHHHHHHHhhcCC Confidence 2 221111111111111122222 12233322 22322222 2256789999999999999999999885 87 Q ss_pred -ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccccccc--CCCCcccccccC-CCCCC Q lcl|Aclame:pro 460 -IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAE--QGIPDEEDDQAL-NGQPL 527 (527) Q Consensus 460 -ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d--~g~~d~~~~~~~-~~~~~ 527 (527) ++.+...+++ |.+.+.++... .+..+....+..+ .+.++...++.. ..++. T Consensus 368 ~i~~~~i~e~~----Gip~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (488) T protein:vir:99 368 RPTRGYVQETY----GVEVESTQAEA-------------TAPTPSTEFAEGDQPSDPAAAMAPQLAEAMQPV 422 (488) T ss_pred CCCHHHHHHHc----CCCCccccccc-------------ccCCCcccCCCCCCCCCchHHHHHHHHHHHHHH Confidence 6766655554 44443322111 0011111000000 000000000000 00000 No 153 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=97.84 E-value=1.6e-05 Score=46.93 Aligned_cols=456 Identities=13% Similarity=0.081 Sum_probs=218.3 Q ss_pred CCC--ChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQ--DKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~--~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~ 75 (527) |-| ++++-...-.-|+ .+| +.+++.|.+|..-.-. .-.+++.+. .++|.+-|...++ T Consensus 3 ~~~~~e~~~l~~r~~~Lk-------------~~R~~~e~~w~e~~~~~lP~~~----~~~~~~~~~-~~~~dstg~~a~~ 64 (517) T protein:vir:10 3 MRFAGNKSKIPKLYEQLV-------------GKRSPFLSRAENYSRFTLPYLM----ADVNDDLSS-QNAWQDDGASATN 64 (517) T ss_pred ccccccHHHHHHHHHHHH-------------HhhhHHHHHHHHHHHHhccccc----cCCCCCccc-cccccchHHHHHH Confidence 322 1222111111111 123 5578888888876411 112333443 3578889999999 Q ss_pred hhhhhhccC-----cccc-ccCcc-------------hhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEE Q lcl|Aclame:pro 76 AKMRFLGQG-----LKWE-FSKKD-------------AKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLL 129 (527) Q Consensus 76 ~~~~~Lg~~-----~~~~-i~~~~-------------~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~ 129 (527) +.++.|+.+ .+|| ++..+ ++|+++ +...+.+.|+...+-++=+..++-|-|+.+ T Consensus 65 ~LAa~l~~~ltpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly 144 (517) T protein:vir:10 65 FLSNKLSQVLFPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIVTGNVMMY 144 (517) T ss_pred HHHHHHHHhhcCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEE Confidence 988888532 2555 23222 123333 334555778998888888888888999865 Q ss_pred EEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEe---eeCCCCccceeeeeeeeeeeeeecCCccccCCcc Q lcl|Aclame:pro 130 LIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDE---YPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGA 206 (527) Q Consensus 130 i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~---~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~ 206 (527) + ++.+. ++ +.+.-+.|+-..|.. |+|..|+.-.. +..|+.=+... ...+... ...++ .. T Consensus 145 ~--~~~~~---~~--~~~pl~~y~v~~d~~--G~v~~ivrr~~~~~~~l~~~~~~~~-~~~~~~~--~~~~~------~~ 206 (517) T protein:vir:10 145 H--PDKTS---PI--QAVPLHHYCVRRDNN--GTVLDIVFLQEKALETFEPSIRMAI-QASRKGK--QYKDK------DN 206 (517) T ss_pred E--eCCCC---cE--EEEEcCeEEEeeCCC--cCeEEEEeeeeccHHHHHHHhhhhc-chhhhhh--ccCCc------Cc Confidence 4 33222 34 445556666666554 56666643211 11111100000 0000000 00000 11 Q ss_pred ce-eeeccccccc-ccccccccccccceeeeccCccc-ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHh Q lcl|Aclame:pro 207 IK-YTEELYEPGK-WDDRPESPLEPDDIKKLSTLTEE-EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQ 283 (527) Q Consensus 207 i~-~~~~~~~~g~-wd~~~~~~~~~~~~~~~~~~~~e-~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~ 283 (527) +. ++...+...+ |- +....++.+. ..--.|....|++.++=...++++||+|=.++.++=+..||+ T Consensus 207 v~v~~~v~~~~~~~~~-----------~~~~~d~~~~~~~s~y~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~ 275 (517) T protein:vir:10 207 VKLYTHAKRTKDGKYL-----------IRQSADDVPVGKESTVTEDKSPFLILTWKRSYGEDYGRGMAEDHAGAFFVIQF 275 (517) T ss_pred eEEEEEEEEeCCCceE-----------EEEEeCceeeccccccccccCCeeeeeeeecCCCCcccchHHHhHHHHHHHHH Confidence 11 1111111111 10 1111122221 222334567899999988889999999999999999999987 Q ss_pred hHHHHHHHHHHhCCceEEeccCCCcCCCCccccee-cCCCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 284 TMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWT-ISPLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKG 361 (527) Q Consensus 284 ~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~-v~pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~ 361 (527) .--..-..+...-.|++-. + .++.+++..+. .++|.++.-..++ ....+...+++....+-++.+..+|...== T Consensus 276 l~~~~~~~~~~a~~~~~lv---~-~~~~~~~~~l~~~~~g~~~~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af~ 351 (517) T protein:vir:10 276 LSEALARGMALMADVKYLV---K-PGSYTDINQFVEGGSGAVLHGVEGDIHIVQLGKYADYTPIQAVLNDYRQRIGRVFM 351 (517) T ss_pred HHHHHHHHHHHhccCCccc---C-cccccchhhccCCCccccccCCcccceeeecccccchhHHHHHHHHHHHHHHHHHh Confidence 7666666666666664432 1 11222222221 1123333221111 223344445677777777777777765431 Q ss_pred CchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc-ccceeEEEEeCCCC Q lcl|Aclame:pro 362 IPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA-DKKLTVTITFRDPK 440 (527) Q Consensus 362 tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~-~~~~~v~v~w~d~l 440 (527) +-. +...|.... .|=+ +..++++|...++.++.++..+++.-++.+.-.+..... ..++.+.++ .... T Consensus 352 ~~~--l~~~~~~rv---TAtE-----V~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l~~~l~~~~v~~~~~-s~la 420 (517) T protein:vir:10 352 MEA--MTRRDAERV---TAYE-----IQRDAMLVEQSLGGVYSLFATTFQGPLARWFMNGISSILTSKNVSPTIL-TGIE 420 (517) T ss_pred hhh--hhccCCccc---cHHH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhcCCCCccceee-ccHH Confidence 111 222232111 1333 337888999999999988877766544443222222111 123334433 1112 Q ss_pred CCCHHHHHHHHHHHHh-----c-------CCccHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHH---HHHHHhcC Q lcl|Aclame:pro 441 PVNNEKRFAQLLELWE-----A-------GLIPAKKLTEELSKIMGFEL----TEEDFRQATEDKKTQG---IAQAEAAD 501 (527) Q Consensus 441 P~D~~~~i~~~v~l~~-----a-------Glls~~ta~~~L~~~g~~~~----~e~~~~~~~e~~a~~a---~~~~aa~d 501 (527) +..+.+.++.+..+.+ + -.|-.+.+++.+.++.|.+. +++++++.-+....++ ....+++. T Consensus 421 ~l~r~~~~~~i~~~~~~i~~~a~~~~~~~~~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~~~~~~~~~~~~~~~~~ag~ 500 (517) T protein:vir:10 421 ALGRMAELDKLGTFNGYVSMTAQWPEPLQQAIKWPDFTDWVQGQISANFPFFKTQDELNAEAQAQQEQEATKYAAEQAGK 500 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHhcCCHHHHHHHHHHHhCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2223333333322211 1 13557788888888877554 3444443322111111 11223344 Q ss_pred cccccccccCCCCcccc Q lcl|Aclame:pro 502 PFGAQMAAEQGIPDEED 518 (527) Q Consensus 502 ~~g~~~~~d~g~~d~~~ 518 (527) ..++.+....-+|++.- T Consensus 501 ~~~~~~~~~~~~~~~~~ 517 (517) T protein:vir:10 501 AIPDMVKNGQINPQGGQ 517 (517) T ss_pred HHHHHHhCCCCCCCCCC Confidence 44443333333333322 No 154 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=97.80 E-value=1.8e-05 Score=46.56 Aligned_cols=368 Identities=11% Similarity=0.040 Sum_probs=167.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |++=.+.-.....--..... ++...+. ++. -..+++.... ...++ ....|.+++++ T Consensus 1 M~~f~~~~~~~~~~~~~~~~---~~~~~~~----------~~~--------~~~~~~~~v~-~~~~~--~~~~v~~~i~~ 56 (386) T protein:vir:48 1 MPIFNITNLATESPPISQGG---FFDITDP----------DFL--------STLNGSEWVS-AESAL--RNSDLFSIINQ 56 (386) T ss_pred Cccccccccccccccccccc---ccccccc----------hhc--------ccccCCceec-hhhhh--cchHHHHHHHH Confidence 76544332221111111111 0000000 000 0111111100 00000 11244444444 Q ss_pred hccCc---cccccCcchhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEE Q lcl|Aclame:pro 81 LGQGL---KWEFSKKDAKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYF 153 (527) Q Consensus 81 Lg~~~---~~~i~~~~~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~f 153 (527) +.-.. +..+.. .... .+..+-| |. .-........++.|.|+..+..|. .|+-+.+..++|..+= T Consensus 57 ia~~ia~~p~~~~~--~~~~----~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~---~g~~~~L~~l~~~~v~ 127 (386) T protein:vir:48 57 LSNDLATVKLTASR--KQLQ----GIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNE---NGRDMKWEYLRPSQVS 127 (386) T ss_pred HHHhhccCceeecc--chhH----HHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECC---CCcEEEEEEecCceeE Confidence 42111 222221 1111 1222333 11 223445667788899988888874 2345567777777665 Q ss_pred EEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccccee Q lcl|Aclame:pro 154 PYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIK 233 (527) Q Consensus 154 p~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~ 233 (527) ...+++.. .+. ++++. .. +.. .. .+ T Consensus 128 v~~~~~~~--~~~--------------------y~~~~----~~-~~~----~~------------------------~~ 152 (386) T protein:vir:48 128 FNRLDNKD--GIY--------------------YNITF----DD-PRI----PP------------------------KQ 152 (386) T ss_pred EEEcCCCc--eEE--------------------EEEEe----cC-ccc----cc------------------------ee Confidence 44433311 111 11000 00 000 00 00 Q ss_pred eeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC-- Q lcl|Aclame:pro 234 KLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR-- 311 (527) Q Consensus 234 ~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~-- 311 (527) .+ + - ==|+|+++..+++.+.|.|-|+-+...+........-......-.|.|-..++-....+.+ T Consensus 153 ~~---------~--~--~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~ 219 (386) T protein:vir:48 153 HV---------P--Q--GDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGLLDFK 219 (386) T ss_pred Ee---------c--C--ccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHH Confidence 00 0 0 0178999887777788999877666655554444333334444456674444322222210 Q ss_pred Ccc-c---ceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccccc--HHH---HH Q lcl|Aclame:pro 312 GNM-V---PWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES--GIA---LD 382 (527) Q Consensus 312 G~~-~---p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~S--G~A---Lq 382 (527) -+. . ...-+.|.++-|+++-++..+...++-..+.+..+...+.|+..=++|+.-+|. .+...+ ... ++ T Consensus 220 ~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~~~~~~e~~~~~~~~ 297 (386) T protein:vir:48 220 TKLSRSRQAMKQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGG--QGDQQSSLEMSLDLYN 297 (386) T ss_pred HHHHHHHHHhhcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CCCcccHHHHHHHHHH Confidence 000 0 111235667778888999999987777788899999999999999999999983 222111 111 11 Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccH Q lcl|Aclame:pro 383 LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPA 462 (527) Q Consensus 383 l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~ 462 (527) ..+.|++. .+++. +-..+++. +. +.+...+-.|.......+.+|+.+|+++. T Consensus 298 ~~l~P~~~-----------~ie~~---l~~~l~~~---~~-----------~~~~~~~~~d~~~~~~~~~~l~~~g~~t~ 349 (386) T protein:vir:48 298 KAVSRYLR-----------PFLSE---LSQKLSCD---VD-----------ADILPAVDPTGSNSVSRINSMVKSGTLAQ 349 (386) T ss_pred HHHHHHHH-----------HHHHH---HHHhhcch---hh-----------cchhhhhccChHHHHHHHHHHHhCCCcCH Confidence 22223221 11111 11111111 10 11112222456677778889999999999 Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 463 KKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 463 ~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) -++.++|...| ....+.... +... ..-..+|.+++++ T Consensus 350 nE~r~~lg~~~---~~~~~~~~~---------------~~~~-~~~~~gGd~~~~~ 386 (386) T protein:vir:48 350 NQGLYILQQAE---ILPKELPEG---------------ENPN-KTTLKGGEINGED 386 (386) T ss_pred HHHHHHhhcCC---CCCccchhh---------------cCCC-CCccCCCCCCCCC Confidence 99988774332 122222211 1100 0012234444444 No 155 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=97.76 E-value=2.2e-05 Score=46.16 Aligned_cols=395 Identities=13% Similarity=0.113 Sum_probs=181.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccccc-----CCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIY-----VPNGEKLIE 75 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~-----~p~~~k~v~ 75 (527) |+..++.=.....-.+...+.+. +...+..+..|||... .....| .+.-.-.++ T Consensus 15 ~~~~~~~~~~~ia~~~~~~~~~~-------------------~~~~~~~~~~iLr~~~--~~~~~y~~m~~D~~i~s~l~ 73 (491) T protein:vir:10 15 FGEPDKSLSSQIATRARSIDFFA-------------------LGMYLPNPDPVLKALG--KDIRVYRELRADAHVGGCVR 73 (491) T ss_pred cccCChHHHHHHHhhhccccccc-------------------ccCCccchHHHHHhcC--CCHHHHHHHhhChHHHHHHH Confidence 22222211111111111111110 0111222222332211 001111 111223455 Q ss_pred hhhhhhccCccccccCc--chhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEE---Eccc Q lcl|Aclame:pro 76 AKMRFLGQGLKWEFSKK--DAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHE---VDPS 150 (527) Q Consensus 76 ~~~~~Lg~~~~~~i~~~--~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~---vdP~ 150 (527) +..+-+ .+.+|.|..+ +.+..+.++.|+++-.|+.-+...- +|+..|-+|+-+.|... +.++.++. ++|+ T Consensus 74 ~Rk~av-~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~---~g~~~~~~l~~r~~~ 148 (491) T protein:vir:10 74 RRKAAV-KALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEML-DAVLYGYQPMEITWGKV---GNYIVPIDVVGKPAD 148 (491) T ss_pred HHHHHH-hCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHH-HhhhhcceeEEEEEeec---CCeeEEEEeeeeccc Confidence 533333 4558887543 4456778888887655665555554 68889999999999853 22333221 1111 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) +|- + ++++. + .|+.. . + T Consensus 149 -~f~-~------------------d~~~~---l------~~~~~-~--~------------------------------- 165 (491) T protein:vir:10 149 -WFV-Y------------------DPENQ---L------RFRSK-D--H------------------------------- 165 (491) T ss_pred -cee-e------------------ccCCc---e------EEecC-C--C------------------------------- Confidence 110 0 11110 0 11000 0 0 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCC-CcC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAP-PRD 309 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~-~~d 309 (527) ...-.+|| |.+|| ||.. .+..+.+||.+-+..+....---|..+.+....++..|.|++...-.+ ..+ T Consensus 166 -------~~~g~~l~-~~k~i--~~~~-~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~a~~ 234 (491) T protein:vir:10 166 -------WMQGEELP-ARKFL--VPRQ-EATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSASD 234 (491) T ss_pred -------CCCcceec-CCCEE--EEEe-cCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCH Confidence 00011222 44455 3333 335678999999999999888899999999999999999986653222 122 Q ss_pred CCCc-cc--ceecCCCeeEecCCCCceEEecccc---ChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHH- Q lcl|Aclame:pro 310 SRGN-MV--PWTISPLGMVEHGQNNKIYRVNGVA---SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALD- 382 (527) Q Consensus 310 ~~G~-~~--p~~v~pg~~~el~~~~k~~~ld~~~---~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALq- 382 (527) ++-+ .. -..++-....-+|.+..+..+.... +...|.+.+++..++|+.+ -+|.+-.|.+.|+.|+- T Consensus 235 ~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~------iLGqtlTt~~~gs~a~~~ 308 (491) T protein:vir:10 235 GEKNLLLDCLEDMVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIA------LLGQNQTTEATSTRASAQ 308 (491) T ss_pred HHHHHHHHHHHHHhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHH------HhhhhcccCcccchhHHH Confidence 2111 11 1224445555588999998887432 3446889999999998875 34544433334555543 Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCC-cc Q lcl|Aclame:pro 383 LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGL-IP 461 (527) Q Consensus 383 l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGl-ls 461 (527) ....-....++.-...+...+ +.++..++ .+-+.... ...+.|...- .+.+..++...+|...|+ ++ T Consensus 309 vh~~v~~di~~~D~~~i~~tl----n~li~~l~----~~N~~~~~---~p~f~~~~~~-e~~~~~a~~~~~L~~~G~~i~ 376 (491) T protein:vir:10 309 AGLEVTDDIRDGDKAVVSEAM----NMLIRWIC----DLNFDGAD---RPVFDMWEQE-QVDEIQAGRDQKLTQAGARFT 376 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HhcCCCCC---cceEEecCcC-chhHHHHHHHHHHHhCCCcCC Confidence 222211111121111222223 22332222 22333222 2456776543 333556777889999999 66 Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccc-cccCCCCcccccccCCCC----------CC Q lcl|Aclame:pro 462 AKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQM-AAEQGIPDEEDDQALNGQ----------PL 527 (527) Q Consensus 462 ~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~-~~d~g~~d~~~~~~~~~~----------~~ 527 (527) .+...+++ |.+.++.+..-. ......+.++.. +...+.+..+.|+..+-. ++ T Consensus 377 ~~~i~e~~----Gip~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 439 (491) T protein:vir:10 377 PAYFKRAY----NLQDGDLDERPL----------PVSAVDTVGAASFAEFEAPDQDALDAALNTLSARDLNADAQAL 439 (491) T ss_pred HHHHHHHh----CCCCCCcCcccc----------ccCCCCCcccccccccCCCCCCchHHHHHHHHHHHHHHHHHHH Confidence 66666554 444433321110 001111111111 111111111111111000 00 No 156 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=97.75 E-value=2.2e-05 Score=46.10 Aligned_cols=393 Identities=14% Similarity=0.086 Sum_probs=176.8 Q ss_pred CCCChhhhhhhhHH----------hh----cccCC--CCCCChHHH---HHHHHHHHHHHHhcCChhheEeeecCCcccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQL----------RA----GEANF--PNAVTDFDK---ARLASYRLYEDMYLTNTSDYQVILRGGDEGD 61 (527) Q Consensus 1 m~~~~~qy~~~~~~----------~~----~~~~~--~~~v~~~d~---~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~ 61 (527) -|..-.+|+....+ ++ +.+.. .+..|..|. +|=.-|++|+++- .| T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il~~~~~~~~~y~~m~-------------~D--- 65 (491) T protein:vir:79 2 SKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELR-------------AD--- 65 (491) T ss_pred CCeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHHhhccCCHHHHHHHh-------------hC--- Confidence 11111112111111 00 00000 011111110 0101123333331 01 Q ss_pred cccccCCchhHHHHhhhhhhccCccccccCcc--hhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCc Q lcl|Aclame:pro 62 QRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKD--AKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEG 139 (527) Q Consensus 62 ~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~--~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~ 139 (527) +.-.-.+++..+-+ .+.+|.|..++ .++.+.++.|+++-.|+.-+... -+|+..|-+|+-|.|+.. + T Consensus 66 ------~~i~s~l~~Rk~av-~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~-lda~~~G~s~~Ei~w~~~---~ 134 (491) T protein:vir:79 66 ------AHVGGCVRRRKAAV-KALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEM-LDAVLYGYQPMEITWGKV---G 134 (491) T ss_pred ------hHHHHHHHHHHHHH-hCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHH-HHhhhhcceeEEEEEeec---C Confidence 11223455533333 45588875443 44567888888765555444444 468889999999999853 2 Q ss_pred cceEE---EEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccc Q lcl|Aclame:pro 140 SRLSL---HEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEP 216 (527) Q Consensus 140 ~r~~i---~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~ 216 (527) .++.+ ..++|+. | . | ++++. . .++.. T Consensus 135 g~~~~~~l~~r~~~~-f----------------~--~-d~~~~---l------~l~~~---------------------- 163 (491) T protein:vir:79 135 NYIVPIDVVGKPADW-F----------------V--Y-DPENQ---L------RFRSK---------------------- 163 (491) T ss_pred CeeeEEeeeeecccc-e----------------e--e-ccCCc---e------EEeec---------------------- Confidence 23322 1122211 1 0 0 11110 0 01000 Q ss_pred ccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhC Q lcl|Aclame:pro 217 GKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGG 296 (527) Q Consensus 217 g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g 296 (527) .....-.+|| |.+||-..| .+..+.++|.+-+..+....---|..+.+....++..| T Consensus 164 -------------------~~~~~g~~lp-~~k~i~~~~---~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G 220 (491) T protein:vir:79 164 -------------------EHWVQGEELP-ARKFLVPRQ---EATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYG 220 (491) T ss_pred -------------------CCCCCceeec-CCCeEEEEe---cCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcC Confidence 0000011223 445653333 33557899999999988888888899999999999999 Q ss_pred CceEEecc-CCCcCCCCc-cc--ceecCCCeeEecCCCCceEEeccc---cChHHHHHHHHHHHHHHHHhhcCchhhccc Q lcl|Aclame:pro 297 LGFYATDS-APPRDSRGN-MV--PWTISPLGMVEHGQNNKIYRVNGV---ASLEPSQTHMNKAEEAMQQTKGIPDIAVGV 369 (527) Q Consensus 297 ~P~~~~~g-~~~~d~~G~-~~--p~~v~pg~~~el~~~~k~~~ld~~---~~la~~~~~~d~L~~~l~~vs~tP~va~G~ 369 (527) .|+....- ....+++-+ .. -..++-....=+|++..+..+... .+...|.+.+++..+.|+.+- +|. T Consensus 221 ~P~~igky~~~a~~~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------LGq 294 (491) T protein:vir:79 221 SPMLVGKHPRSASDAETNLLLDRLEDMVQDAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL------LGQ 294 (491) T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHhcCeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH------hhh Confidence 99755432 212222111 11 122444555558999999888643 234568999999999888743 565 Q ss_pred ccccccccHHHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCH-HHH Q lcl|Aclame:pro 370 VDAAVAESGIALD-LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNN-EKR 447 (527) Q Consensus 370 ~d~s~a~SG~ALq-l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~-~~~ 447 (527) +-.|.+.|+.|+- ....-....++.-...+...+ +.++..++ .+-+.... ...+.|.. |.+. +.. T Consensus 295 tlTt~~~gs~a~~~vh~~v~~~i~~~D~~~i~~tl----n~li~~l~----~~N~~~~~---~p~f~~~e--~ee~~~~~ 361 (491) T protein:vir:79 295 NQTTEATSTRASAQAGLEVTDDIRDGDKAIVVEAM----NMLIRWIC----DLNFDGAA---RPVFDMWE--QEQVDEIQ 361 (491) T ss_pred hhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HhcCCCCC---cceEeecC--cCchhHHH Confidence 5444334555543 222222222222222222333 23333222 22222222 23345544 3343 345 Q ss_pred HHHHHHHHhcCC-ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-cccccccCCCC Q lcl|Aclame:pro 448 FAQLLELWEAGL-IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DEEDDQALNGQ 525 (527) Q Consensus 448 i~~~v~l~~aGl-ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~~~~~~~~~~ 525 (527) ++.+.+|...|+ ++.+...+++ |.+.++.+.. .... ....+.++...+....+ +.+.|...+.. T Consensus 362 a~~~~~L~~~G~~i~~~~~~e~~----Gip~~~~~e~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 427 (491) T protein:vir:79 362 AGRDEKLTRAGARFTPAYFKRAY----NLQDGDLDER-PLPV---------SAVDAVGAASFAEFEAPDQDALDAALNAL 427 (491) T ss_pred HHHHHHHHhCCCccCHHHHHHHh----CCCCCCCCcc-ccCc---------CcccccccccccccCCCCCcchHHHHHHH Confidence 667789999998 6666666554 4443332211 1000 00011111111111111 11111111110 Q ss_pred C----------C Q lcl|Aclame:pro 526 P----------L 527 (527) Q Consensus 526 ~----------~ 527 (527) . + T Consensus 428 ~~~~~~~~~~~~ 439 (491) T protein:vir:79 428 SARDLNADAQAL 439 (491) T ss_pred HHHHHHHHHHHH Confidence 0 0 No 157 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=97.72 E-value=2.5e-05 Score=45.84 Aligned_cols=448 Identities=11% Similarity=0.039 Sum_probs=216.3 Q ss_pred CCCC-hhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccc-cccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQD-KRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGD-QRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~-~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~-~~~~~~p~~~k~v~~~~ 78 (527) |--+ ++-|+.. + . ..-+.+.+.|.+|..-+-. .-.|++.+. ....|.+.|.+.+++.+ T Consensus 1 mk~~~~~~~~~l----k--r----------~~~e~~w~e~a~~tlP~~~----~~~~~~~~~~~~~~~dstg~~a~~~LA 60 (510) T protein:vir:78 1 MKSTAAMLWEKL----R--D----------GSVEQRAIEFAKTTLPYLM----VDPMSGSRGVVEHDFQSAGALLVNNLA 60 (510) T ss_pred ChhHHHHHHHHH----h--c----------cchHHHHHHHHHhhccccc----cCCCCcccccccCcccchHHHHHHHHH Confidence 3322 1122211 1 0 1125677788888765310 011222222 23468888999999988 Q ss_pred hhhccC-----cccc-ccCcc-------------hhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEEEEe Q lcl|Aclame:pro 79 RFLGQG-----LKWE-FSKKD-------------AKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLLLIG 132 (527) Q Consensus 79 ~~Lg~~-----~~~~-i~~~~-------------~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~ 132 (527) +.|+.+ .+|| ++..+ .+|+++ +..-+.+.|+...+.++-+..++-|-+++++. T Consensus 61 a~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~- 139 (510) T protein:vir:78 61 AKLARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYRN- 139 (510) T ss_pred HHHHHhhcCCCCcccccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEEe- Confidence 887532 2454 22221 123333 33456678899888898888888899876553 Q ss_pred cCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeee---CCCCccceeeeeeeeeeeeeecCCccccCCcccee Q lcl|Aclame:pro 133 DDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYP---HPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKY 209 (527) Q Consensus 133 d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~---~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~ 209 (527) + + +.|+ +.+.-+.|.-..|.. |+|..|+.-..+. .++. +...+.+. . ....| ...+. T Consensus 140 -~-~--~~~~--~~~pl~~y~v~~d~~--G~vd~i~rr~~~t~~~l~~~--~~~~~~~~-~------~~~~~--~~~v~- 199 (510) T protein:vir:78 140 -S-D--EATV--VAWSLRSYAVRRDAT--GRWMDIVLKQRYKSKDLDDV--YKQDLMRA-G------RNLSG--SGSVD- 199 (510) T ss_pred -C-C--CCeE--EEEEcceeEEeeCCC--cCeeEEEeeeeccHHHHHHH--hhHHhhhh-h------hccCC--CceEE- Confidence 2 2 1244 445556665556554 5666665322111 0000 00000000 0 00011 01111 Q ss_pred eecccccccccccccccccccceeeeccCccc-ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHH Q lcl|Aclame:pro 210 TEELYEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDE 288 (527) Q Consensus 210 ~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~ 288 (527) ..| ...+.+...+|+.. +..-.++.+. ..--.|....|++.++=...++++||+|=.++.++=+..||+.--.. T Consensus 200 -v~~--~V~~~~~~~~~~~s--v~~e~dg~~i~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~ 274 (510) T protein:vir:78 200 -LYT--HVQRRKGTAMDYAE--MYHEIDGVRVGETGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKL 274 (510) T ss_pred -EEE--EEEeecCCCCcEEE--EEEEecCeeeccccccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 111 11111111111111 0000122222 11223445689999998888999999999999999999998877777 Q ss_pred HHHHHHhCCce-EEe-ccCCCcCCCCcccceecC-CCeeEecCCC-CceEEeccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 289 DLIMVFGGLGF-YAT-DSAPPRDSRGNMVPWTIS-PLGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 289 ~~i~~~~g~P~-~~~-~g~~~~d~~G~~~p~~v~-pg~~~el~~~-~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) -..+...-.|+ .+- +|. .++..+.-+ +|.++.-..+ -....+...+++...++-++.+..+|...= T Consensus 275 l~~a~~a~~~~~lv~p~g~------~~~~~l~~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF---- 344 (510) T protein:vir:78 275 GLYELESLEVLNLVDEAKG------AVVDDYQDAEMGDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAF---- 344 (510) T ss_pred HHHHHHhhcCCcccCCccc------cchhhhccCCCceeecCCcccccccccCcccchHHHHHHHHHHHHHHHHHH---- Confidence 77677666664 222 222 122222222 2344322222 122333434577777777788877777641 Q ss_pred hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc---cc--ee-EEEEeCC Q lcl|Aclame:pro 365 IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD---KK--LT-VTITFRD 438 (527) Q Consensus 365 va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~---~~--~~-v~v~w~d 438 (527) +.......++.-.|=++. .++++|...++.++.++..+++.-++.+.-.++..... .+ .. +.|+ . T Consensus 345 --~~~l~~~~~~rvTAtEV~-----~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~--~ 415 (510) T protein:vir:78 345 --MYGANQRDAERVTAEEVR-----ITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIET--G 415 (510) T ss_pred --hhccccCCCCCcCHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcccccceeee--c Confidence 111111111111243433 56788888888888888777666554442222211111 11 11 1133 2 Q ss_pred CCCCCHHHHHHHHHHH----HhcCC-------ccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHH----HHHH Q lcl|Aclame:pro 439 PKPVNNEKRFAQLLEL----WEAGL-------IPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGI----AQAE 498 (527) Q Consensus 439 ~lP~D~~~~i~~~v~l----~~aGl-------ls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~----~~~a 498 (527) ..|-.+.+.++.+... -..+- +-.+.+++.+.++.|.+| +.++++++-+...+++. .++| T Consensus 416 is~Laraq~~~~l~~~~q~l~~~~~~~q~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a 495 (510) T protein:vir:78 416 LPALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEEQRRQAAQAQAAQET 495 (510) T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcChhhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3345555555544322 22222 557888999988888654 56776665433221111 1122 Q ss_pred hcCcccccccccCCC Q lcl|Aclame:pro 499 AADPFGAQMAAEQGI 513 (527) Q Consensus 499 a~d~~g~~~~~d~g~ 513 (527) +.-..++-+..-.|. T Consensus 496 ~~~~~~~~~~~~~g~ 510 (510) T protein:vir:78 496 LLEGASDMTNALAGV 510 (510) T ss_pred HHHhhhhhcccCCCC Confidence 222222222222333 No 158 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=97.67 E-value=3e-05 Score=45.36 Aligned_cols=417 Identities=11% Similarity=0.070 Sum_probs=171.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |++-.+ ++.+... ......+.+-...|+-..-.+.+....-..|- -.++-....+| ..|+.++.- T Consensus 1 Mg~~~~-------l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~-~~~al~~~~V~-----~~v~~Ia~~ 65 (457) T protein:vir:13 1 MGFWSA-------LFGRGHS--PALDGIEARAWEPYDPSIYNLGAVAASGETVT-PHDALQVSAVF-----ASVRLLSET 65 (457) T ss_pred Cchhhh-------hhccccc--ccccccccccccccchHHHhhcccccCCceec-hHHhhccHHHH-----HHHHHHHHh Confidence 765222 1211111 11111111111111111111111111101110 01111111111 122222222 Q ss_pred hccCccccc---cCcch-hH-HHHHHHHHHhc-C-ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccce Q lcl|Aclame:pro 81 LGQGLKWEF---SKKDA-KV-DDAIRVLFDRE-N-WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPST 151 (527) Q Consensus 81 Lg~~~~~~i---~~~~~-~v-~~~lr~w~~~e-~-l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~ 151 (527) ++ ..+..+ +..+. ++ ...|......+ + |. .-+.......++.|.|+..|.++. |+=+.+..++|.. T Consensus 66 iA-~lp~~~~~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~~----g~~~~l~~l~p~~ 140 (457) T protein:vir:13 66 IA-TLPLSTYSKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQG----PNIVGLDVLDPTK 140 (457) T ss_pred hc-cCceEEEEecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecC----CcEEEEEEEccCc Confidence 21 011111 11111 11 11122222111 1 11 234455566777899988888773 2234566677776 Q ss_pred EEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccc Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDD 231 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~ 231 (527) +-+..+.+.... .++-+ .|. +...|. .. ....+ T Consensus 141 v~v~~~~~~~~~-------------------~~~~~--~y~--~~~~~~-----~~--~~~~~----------------- 173 (457) T protein:vir:13 141 IHVHMVMVDGLR-------------------RKVFE--AYD--IDADGN-----EV--LLGWF----------------- 173 (457) T ss_pred eEEEEecCCCcc-------------------ceeEE--EEE--EecCCc-----ee--eEEee----------------- Confidence 655433221100 00000 110 000000 00 00000 Q ss_pred eeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC Q lcl|Aclame:pro 232 IKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR 311 (527) Q Consensus 232 ~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~ 311 (527) + .==|+|+++..+.+...|.|-++-+...+.-.+..-.-......-.+.|-.+++-....+++ T Consensus 174 ---------------~--~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e 236 (457) T protein:vir:13 174 ---------------T--PRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTMSEE 236 (457) T ss_pred ---------------C--ccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCCCHH Confidence 0 00278888876777788999877665555544333322333333456664333222222211 Q ss_pred C--c-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc-ccHHH- Q lcl|Aclame:pro 312 G--N-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA-ESGIA- 380 (527) Q Consensus 312 G--~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a-~SG~A- 380 (527) - + ..-|. -+.|.++-|+.+.+|..+...+.-..+.+..+...+.|+..=++|++-+|..+.++. -|.+. T Consensus 237 ~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq 316 (457) T protein:vir:13 237 GLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAE 316 (457) T ss_pred HHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHH Confidence 0 0 00111 113556668888999999887666667788888889999999999999996654321 12211 Q ss_pred --H---HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 381 --L---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 381 --L---ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) + +-.+.|++. .+++.+ -..++...+ .....+++.+...+-.|.++.++...+++ T Consensus 317 ~~~~f~~~tl~P~~~-----------~ie~~l---n~~L~~~~~-------~~~~~i~fd~~~l~~~D~~~r~~~~~~~~ 375 (457) T protein:vir:13 317 QNIAFTMFSLRPWLE-----------RIEAGF---NRLLFAETA-------DRFRFVKFNLDEIKRGAPKERMELWSLGL 375 (457) T ss_pred HHHHHHHHHHHHHHH-----------HHHHHH---HHhhcCccc-------cCceeEEeechhhhccCHHHHHHHHHHHH Confidence 1 111222221 222221 111221111 12234677778888899999999999999 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHH-HHHHH-----HHHHHHHHHHH----HhcCcccccccccCCCCcccccccCCCC Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEED-FRQAT-----EDKKTQGIAQA----EAADPFGAQMAAEQGIPDEEDDQALNGQ 525 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~-~~~~~-----e~~a~~a~~~~----aa~d~~g~~~~~d~g~~d~~~~~~~~~~ 525 (527) ++|+++.-++.+++ |.+|-++- .++.. ..+......+. .+..+.. ...+.+.-+++..|++.... T Consensus 376 ~~G~~T~NE~R~~~----gl~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~d~~~~~~ 450 (457) T protein:vir:13 376 QNGIYSIDEVRAAE----DMTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPA-EEPDEEPEPEGKPDDEGATE 450 (457) T ss_pred hCCCcCHHHHHHHh----CCCCCCCCcccceeeccccccccccccccccCCCCCCCCCc-cccCCCCCCCCCCccccCCC Confidence 99999999998865 44443221 01100 00000000000 0000000 00011111112222221111 Q ss_pred CC Q lcl|Aclame:pro 526 PL 527 (527) Q Consensus 526 ~~ 527 (527) .- T Consensus 451 ~~ 452 (457) T protein:vir:13 451 ED 452 (457) T ss_pred Cc Confidence 11 No 159 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=97.66 E-value=3.1e-05 Score=45.28 Aligned_cols=403 Identities=11% Similarity=0.052 Sum_probs=183.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |..-.+-+. |.++.....-.++..+ ..+.++...+..-.. | -++++.....++ ..|+.+++- T Consensus 1 M~~~~~~f~----~~~r~~~~~~~~~~~~-------~~~~~~~g~~~~~~~-v-~~~~al~~~~v~-----~~i~~ia~~ 62 (429) T protein:vir:10 1 MDSVKKFFN----FEKRQTSQVIELNKDD-------EKLLEWLGISPSTIS-V-KGKNALKVATVF-----ACIKILSES 62 (429) T ss_pred Cchhhhhhc----ccccCcccccccCCCh-------HHHHHHhcCCCCcce-e-chhhhhccHHHH-----HHHHHHHHh Confidence 766655442 3333332111111111 122333322221111 1 122221111111 223332222 Q ss_pred hccCccccc---cCcc-hh-----HHHHHHHHHHhc-Cc--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 81 LGQGLKWEF---SKKD-AK-----VDDAIRVLFDRE-NW--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 81 Lg~~~~~~i---~~~~-~~-----v~~~lr~w~~~e-~l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) ++ ..+..+ ...+ .+ +...|.. ..| ++ ..-........++.|.+++.+.+|. .|+-+.+..++ T Consensus 63 ia-~l~~~~~~~~~~~~~~~~~~~l~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~---~G~~~~L~~i~ 136 (429) T protein:vir:10 63 VS-KLPLKIYQEDEYGIQRGTKHYLNNLLRL--RPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR---KGKVQALWPID 136 (429) T ss_pred hc-cCceEEEEecCCceeeccccHHHHHHHh--hccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC---CCcEEEEEEEc Confidence 21 113322 1111 11 2223321 011 11 1233455566777899999998874 23445777888 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |.++-+..+.++.- . ...+..|. +...|.. T Consensus 137 ~~~v~v~~~~~~~~--~-------------------~~~~~~~~--~~~~g~~--------------------------- 166 (429) T protein:vir:10 137 ASKVTVYIDDVGLL--N-------------------SKTKMWYV--VNTGGQQ--------------------------- 166 (429) T ss_pred CceeEEEEcCcccc--c-------------------ccceEEEE--EccCCeE--------------------------- Confidence 88876655443110 0 00000110 0000100 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) +. ++ .=-|+||++..+.+...|.|-|+-+...+........-......-.+.|-..++..... T Consensus 167 ----~~---------~~----~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l 229 (429) T protein:vir:10 167 ----RV---------LK----PEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL 229 (429) T ss_pred ----EE---------Ec----cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC Confidence 00 00 11289998765667778988887777666655443333333333445664443322222 Q ss_pred CCC--Cc-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 309 DSR--GN-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 309 d~~--G~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) +++ -+ ...|+ -+.|.+.-++.+-++..++..+.=..+.+..+...+.|+..-++|...+|..+.+.-.+-. T Consensus 230 ~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e 309 (429) T protein:vir:10 230 NEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIE 309 (429) T ss_pred CHHHHHHHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH Confidence 211 00 01111 1235565688888999998766666678888899999999999999999866544321111 Q ss_pred H-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 380 A-----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLEL 454 (527) Q Consensus 380 A-----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l 454 (527) . ++..+.|++. .+++. +-..++...+ ....+.+++.+...+-.|.++.++...++ T Consensus 310 ~~~~~f~~~~l~P~~~-----------~ie~~---ln~kl~~~~~------~~~g~~~~fd~~~ll~~d~~~~~~~~~~~ 369 (429) T protein:vir:10 310 QQQQQFYTDTLQATLT-----------MYEQE---MTYKLFLDSE------LDKGFYSKFNVDAILRADIKTRYEAYRTG 369 (429) T ss_pred HHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcChhh------cCCCcEEEeechhhhcCCHHHHHHHHHHH Confidence 1 1112222221 11121 1111121111 11122355566677888999999999999 Q ss_pred HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 455 WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 455 ~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ..+|+++..++.++| |.+|-+ .-.+.....-....+ ..+..-..++.+ +.|...+..+|+ T Consensus 370 ~~~G~~T~NE~R~~~----gl~p~~-ggD~~~~~~n~~~~d---~~~~~~~k~g~~--~~~~~~~~~e~~ 429 (429) T protein:vir:10 370 IQGGFLKPNEARSKE----DLPPEA-GGDRLLVNGNMLPID---MAGQAYLKGGDT--NGEVSKEGNEGN 429 (429) T ss_pred HhCCCcCHHHHHHHh----CCCCCC-CcCeeeecccccchh---hccccccCCCCC--CCCCCCCCCCCC Confidence 999999999999876 555432 211110000000000 111111111111 123333333444 No 160 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=97.63 E-value=3.5e-05 Score=44.98 Aligned_cols=373 Identities=12% Similarity=0.026 Sum_probs=169.3 Q ss_pred CCCChhhhhhhhHHhhcccCCC------CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFP------NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~------~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) |++= .|+.+...-+ ++.+. ........ .+.+.++. .| ...+ ..-.|.....| T Consensus 3 m~~~--------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~g~--~v-~~~~-----al~~~~v~~~v 60 (392) T protein:vir:74 3 LPIL--------NFINQTNDPPEAGSVQSYFPD-----GNDAQIME-SLLGDNNE--WV-SARA-----ALRNSDLFSII 60 (392) T ss_pred chhh--------hhhhcccCccccccccccccc-----Cchhhhhh-hccCCCCc--cc-chhh-----hhcchHHHHHH Confidence 6662 2333322100 11110 01111111 11111111 00 0111 11112222333 Q ss_pred HhhhhhhccCccccccCcchhHHHHHHHHHHhcC--c--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 75 EAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDREN--W--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 75 ~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~--l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) +.+++-++ +.+..+..... +..++ +-| + ..-........++.|.|+..+..|. + |+-+.+..++|. T Consensus 61 ~~ia~~ia-~lp~~~~~~~~--~~l~~----~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~--G~~~~L~~i~~~ 130 (392) T protein:vir:74 61 LQLSSDLA-IVKINAEKKKN--QGIID----NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-N--GADMKWEYLRPS 130 (392) T ss_pred HHHHHhhc-cCceeeccchh--hhhhh----hcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC-C--CcEEEEEEEcCc Confidence 33333321 11222222111 11222 111 1 1222334456777899988888774 3 344567778887 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) .+=+..++++.. ..+++++ .+ +. +... T Consensus 131 ~v~v~~~~~~~~----------------------~~y~~~~----~~-~~----~~~~---------------------- 157 (392) T protein:vir:74 131 QVNTYYFEYENG----------------------MYYNITF----DD-PK----IEPI---------------------- 157 (392) T ss_pred eeEEEEcCCCce----------------------EEEEEEe----cC-Cc----ccee---------------------- Confidence 775554443211 0111111 00 00 0000 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe--ccCCCc Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT--DSAPPR 308 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~--~g~~~~ 308 (527) ..+ +-+ =|+||++..+++...|.|-|+-+...++.....-.-......-.+.|-..+ .+.... T Consensus 158 --~~~-----------~~~--evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~ 222 (392) T protein:vir:74 158 --LQA-----------PQS--DLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLL 222 (392) T ss_pred --EEE-----------cCc--cEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCc Confidence 000 000 178999876777778999887776666554444333333334455564333 222111 Q ss_pred -CC-CCccc-ce--ecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHH Q lcl|Aclame:pro 309 -DS-RGNMV-PW--TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDL 383 (527) Q Consensus 309 -d~-~G~~~-p~--~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql 383 (527) +. .=+.. -+ ..+.|.+.-|+++-+|..+...++...+.+..+...+.|+..=++|.+-+|.... ..|...... T Consensus 223 ~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~--~~~~~e~~~ 300 (392) T protein:vir:74 223 SDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD--QQSSIQQIS 300 (392) T ss_pred hHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC--cccHHHHHH Confidence 10 00000 00 0234666668888999999987777888999999999999999999999994432 222211100 Q ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHH Q lcl|Aclame:pro 384 KLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAK 463 (527) Q Consensus 384 ~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ 463 (527) .| +..+- ..+...+++.+.. .+++ .+ ++.....+-.|....++.+.+++.+|+++.. T Consensus 301 ~~---~~~~l---~p~~~~ie~~l~~---~l~~---~~-----------~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~n 357 (392) T protein:vir:74 301 GM---YASAL---NRYLRPAISELEY---KLSD---HI-----------SVNMRPAIDPLGDNYLSTISTATRWGALAEN 357 (392) T ss_pred HH---HHHHH---HHHHHHHHHHHHH---hccc---hh-----------cccchhhhcCCHHHHHHHHHHHHhCCCcCHH Confidence 00 00000 0011122222111 1111 11 1111222334667778889999999999999 Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCC Q lcl|Aclame:pro 464 KLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQP 526 (527) Q Consensus 464 ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~ 526 (527) +|.++|.+.|+ .+ .++++. +-..| -.+-|+.+|.| T Consensus 358 ear~~~~~~g~-~p--ne~r~~------------enl~~-------------~~~Gd~~~p~p 392 (392) T protein:vir:74 358 QATFVLQEAGY-IP--KDLPAP------------ENTNK-------------KTTGQSNEPVP 392 (392) T ss_pred HHHHHHHhCCC-Cc--cccchh------------cCCCC-------------CCCCCCCCCCC Confidence 99999888764 22 333321 00111 11113466777 No 161 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=97.62 E-value=3.7e-05 Score=44.91 Aligned_cols=400 Identities=12% Similarity=0.104 Sum_probs=176.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHh---- Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEA---- 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~---- 76 (527) -.|...| -+..+|=.|+..-+.+.|..+.+++. +-|..++. .+.+|++ T Consensus 52 ~a~~~~~-~~~~~~~~~~~~r~~~~~~~~l~~~~------~~~~~npi---------------------v~~~I~~ia~~ 103 (551) T protein:vir:80 52 VAYSQPV-IGSMSANPGFKTKPSIRNNQDLHGVL------KKFGGNII---------------------LNAIINTRSNQ 103 (551) T ss_pred ceeeccc-ccceecCcccccCccccChhHHHHHH------HHhhcCHH---------------------HHHHHHHHHHH Confidence 1111111 11233334445555566665554431 12222211 2233333 Q ss_pred hhhhh--------ccCccccccCcch-------hHHHHHHHHHHhcCch---------hhHHHHhHhhhhcccEEEEEEe Q lcl|Aclame:pro 77 KMRFL--------GQGLKWEFSKKDA-------KVDDAIRVLFDRENWE---------QKFESLKRWTEIRGDYVLLLIG 132 (527) Q Consensus 77 ~~~~L--------g~~~~~~i~~~~~-------~v~~~lr~w~~~e~l~---------~k~~~~~r~a~~~GDav~~i~~ 132 (527) +++|- |+++...+...+. +--..++.+..+.+.. .-+....+..++.|-|++.+.+ T Consensus 104 IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~r 183 (551) T protein:vir:80 104 VSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVF 183 (551) T ss_pred HhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEE Confidence 33221 2444433322221 1122455666555543 2333455666777999888888 Q ss_pred cCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeec Q lcl|Aclame:pro 133 DDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEE 212 (527) Q Consensus 133 d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~ 212 (527) |. . |+-+.+..+||+++.+..++++.. +++. +.|.... + +.+..+ T Consensus 184 d~-~--G~~~~L~~l~p~~V~v~~~~~g~~-------------~~~~---------~~y~~~~-~-------g~~~~~-- 228 (551) T protein:vir:80 184 NR-N--QSMVRFVAKDPTTIFFATTADGKI-------------PDNG---------NRFVQVI-D-------QKIVAT-- 228 (551) T ss_pred CC-C--CcEEEEEEeCCceeEEEECCcccc-------------ccCc---------eEEEEEe-C-------CcEEEE-- Confidence 75 2 344567889999998887766321 1000 0111110 0 110000 Q ss_pred ccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCC---CCCccCCccccchHHHHHHHHhhHHHHH Q lcl|Aclame:pro 213 LYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPI---MNAMFGRSGLAGLESLIASVNQTMTDED 289 (527) Q Consensus 213 ~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~---~~~~wG~S~Ledl~~l~deLn~~lsd~~ 289 (527) + +-+- |+||+..++ ...++|.|-|+-+...+...+..-.-.. T Consensus 229 -~--------------------------------~~~e--iiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~ 273 (551) T protein:vir:80 229 -F--------------------------------NARE--MAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFND 273 (551) T ss_pred -E--------------------------------cccc--eEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHH Confidence 0 0000 577764332 3456788877666665555544333233 Q ss_pred HHHHHhCCceEE--eccCCCcCCCC-c--cccee------cCCCeeEe-cCCCCceEEeccccChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 290 LIMVFGGLGFYA--TDSAPPRDSRG-N--MVPWT------ISPLGMVE-HGQNNKIYRVNGVASLEPSQTHMNKAEEAMQ 357 (527) Q Consensus 290 ~i~~~~g~P~~~--~~g~~~~d~~G-~--~~p~~------v~pg~~~e-l~~~~k~~~ld~~~~la~~~~~~d~L~~~l~ 357 (527) ....-.+.|-.. ..+....+.+- + ..-|. -+.|.+.- ++++-+|..+...+.-..|.+..+...+.|+ T Consensus 274 ~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia 353 (551) T protein:vir:80 274 RFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVIS 353 (551) T ss_pred HHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHHHHHHHHHHHH Confidence 233334567433 33332222110 0 01111 12355433 3455689999887777778999999999999 Q ss_pred HhhcCchhhccccccccc---------ccHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc Q lcl|Aclame:pro 358 QTKGIPDIAVGVVDAAVA---------ESGI------ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVG 422 (527) Q Consensus 358 ~vs~tP~va~G~~d~s~a---------~SG~------ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~ 422 (527) .+=++|++-+|-.+.++. -|.+ -++-.+.|++.+ +++. +..+|. T Consensus 354 ~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~-----------ie~~----ln~~L~------ 412 (551) T protein:vir:80 354 ALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGF-----------IEDF----INKHIV------ 412 (551) T ss_pred HHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHH-----------HHHH----HHhhhc------ Confidence 999999999995432210 1111 122233333321 1121 111111 Q ss_pred ccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHH---------HHHH--- Q lcl|Aclame:pro 423 IDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQAT---------EDKK--- 490 (527) Q Consensus 423 ~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~---------e~~a--- 490 (527) ...... ..+.|......+..+.. ++.++..+|+++.-++.+++ |.+|..+.-.... .... T Consensus 413 -~~~~~~--~~f~f~~~~~~~~~~~~-~~~~~~~~g~lT~NE~R~~~----gl~P~~egGD~~~~~~~~~~~~~~~~~~~ 484 (551) T protein:vir:80 413 -AEFGDK--YTFQFVGGDIKSELESV-KILAEKAKVAMTVNEVRKEL----NLPGDVIGGDIPLNGVIVQRIGQLMQQEQ 484 (551) T ss_pred -cccCCc--eEEEeeccChhhHHHHH-HHHHHHhcCCcCHHHHHHHh----CCCCCCCCCceeecccccccccccccccC Confidence 111111 34567766666655544 46678889999999999877 4444222100000 0000 Q ss_pred HHHHHHHHhcCcccccccc-cCCCCcccccccCCCCCC Q lcl|Aclame:pro 491 TQGIAQAEAADPFGAQMAA-EQGIPDEEDDQALNGQPL 527 (527) Q Consensus 491 ~~a~~~~aa~d~~g~~~~~-d~g~~d~~~~~~~~~~~~ 527 (527) -....+.+..+......+. ++.-++++.++++....- T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 522 (551) T protein:vir:80 485 FEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDI 522 (551) T ss_pred cchhhhhhccccccCcCCCCCCCCCCCCCCccccCCCc Confidence 0000111111111111111 111111111221111111 No 162 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=97.59 E-value=4.1e-05 Score=44.65 Aligned_cols=406 Identities=10% Similarity=0.053 Sum_probs=180.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.+--|- ...-.|..+.....-.++.. ...+ .++...+..-.. | -.+++.....+| +|-.+|-+.++- T Consensus 1 M~~~~r~-~~~~~~~~r~~~~~~~~~~~-~~~~------~~~~g~~~~~~~-v-~~~~al~~~~v~--~~i~~ia~~ia~ 68 (432) T protein:vir:10 1 MKIVDSV-KKFFNFEKRQTSQVIELNKD-DEKL------LEWLGISPSTIS-V-KGKNALKVATVF--ACIKILSESVSK 68 (432) T ss_pred CChHHHH-HHhcCccccCcccccccCCc-hHHH------HHHhCCCcCccc-c-chhhhhccHHHH--HHHHHHHHhhcc Confidence 6654331 00001122222100111111 1111 222222211111 1 112222211122 222222222222 Q ss_pred hccCccccc---cCcc-hh-----HHHHHHHHHHhcC---chhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 81 LGQGLKWEF---SKKD-AK-----VDDAIRVLFDREN---WEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 81 Lg~~~~~~i---~~~~-~~-----v~~~lr~w~~~e~---l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) | +..+ ...+ .+ +...|+. ..|. ...-+.......++.|.++..+.+|. .|+-+.+..++ T Consensus 69 l----p~~~~~~~~~~~~~~~~~~l~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~---~G~~~~L~~i~ 139 (432) T protein:vir:10 69 L----PLKIYQEDEYGIQRGTKHYLNNLLRL--RPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR---KGKVQALWPID 139 (432) T ss_pred C----ceEEEEecCCceeeccccHHHHHHHh--hccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC---CCcEEEEEEEc Confidence 2 2221 1111 11 2333332 0011 11334555666777899999999884 24445677788 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |..+-+..+.+..- ....++.|. . ...|. ..+ T Consensus 140 ~~~v~v~~d~~~~~---------------------~~~~~~~y~-~-~~~g~-------~~~------------------ 171 (432) T protein:vir:10 140 ASKVTVYIDDVGLL---------------------NSKTKMWYV-V-NTGGQ-------QRV------------------ 171 (432) T ss_pred CceeEEEEcCcccc---------------------cccceEEEE-E-ecCCe-------EEE------------------ Confidence 88776655443110 000011111 0 00010 000 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) + + .==|+||++..+.+...|.|-++-+...+........-......-.+.|-..++..... T Consensus 172 ------~---------~----~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l 232 (432) T protein:vir:10 172 ------L---------K----PEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL 232 (432) T ss_pred ------E---------c----cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC Confidence 0 0 00189998765667788998887776666555333333333333355675444322222 Q ss_pred CCCC--c-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 309 DSRG--N-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 309 d~~G--~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) +++- + ..-|+ -+-|.+.-++.+-+|..++..+.=..+.+..+...+.|+..-++|.+-+|..+.++..+-. T Consensus 233 ~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e 312 (432) T protein:vir:10 233 NEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIE 312 (432) T ss_pred CHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH Confidence 2210 0 01111 1235566688888999999766666678888999999999999999999966544321111 Q ss_pred H-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 380 A-----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLEL 454 (527) Q Consensus 380 A-----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l 454 (527) . ++-.+.|++. .+++. +-..+|...+ ......+.+.+...+-.|.++.++...++ T Consensus 313 ~~~~~~~~~~l~P~~~-----------~ie~~---ln~kLl~~~~------~~~g~~~~fd~~~l~~~d~~~~~~~~~~~ 372 (432) T protein:vir:10 313 QQQQQFYTDTLQATLT-----------MYEQE---MTYKLFLDSE------LDKGFYSKFNVDAILRADIKTRYEAYRTG 372 (432) T ss_pred HHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcChhh------cCCCcEEEeechhhhcCCHHHHHHHHHHH Confidence 1 1111122111 11111 1111221111 11223456667788888999999999999 Q ss_pred HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 455 WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 455 ~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +.+|+++..++.++| |++|-+ .-.+...-.-....+ ++++. ..-+.+-+.|......+|+ T Consensus 373 ~~~G~~t~NE~R~~~----g~~pi~-ggD~~~~~~n~~~~~--~~~~~---~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 373 IQGGFLKPNEARSKE----DLPPEA-GGDRLLVNGNMLPID--MAGQA---YLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HhCCCcCHHHHHHHh----CCCCCC-CCCeEeecccccchh--hcccc---ccCCCCCCCCCCCCCCCCC Confidence 999999999999876 444422 111100000000000 01000 0001111122222333333 No 163 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=97.59 E-value=4.1e-05 Score=44.65 Aligned_cols=406 Identities=10% Similarity=0.053 Sum_probs=180.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.+--|- ...-.|..+.....-.++.. ...+ .++...+..-.. | -.+++.....+| +|-.+|-+.++- T Consensus 1 M~~~~r~-~~~~~~~~r~~~~~~~~~~~-~~~~------~~~~g~~~~~~~-v-~~~~al~~~~v~--~~i~~ia~~ia~ 68 (432) T protein:vir:10 1 MKIVDSV-KKFFNFEKRQTSQVIELNKD-DEKL------LEWLGISPSTIS-V-KGKNALKVATVF--ACIKILSESVSK 68 (432) T ss_pred CChHHHH-HHhcCccccCcccccccCCc-hHHH------HHHhCCCcCccc-c-chhhhhccHHHH--HHHHHHHHhhcc Confidence 6654331 00001122222100111111 1111 222222211111 1 112222211122 222222222222 Q ss_pred hccCccccc---cCcc-hh-----HHHHHHHHHHhcC---chhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 81 LGQGLKWEF---SKKD-AK-----VDDAIRVLFDREN---WEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 81 Lg~~~~~~i---~~~~-~~-----v~~~lr~w~~~e~---l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) | +..+ ...+ .+ +...|+. ..|. ...-+.......++.|.++..+.+|. .|+-+.+..++ T Consensus 69 l----p~~~~~~~~~~~~~~~~~~l~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~---~G~~~~L~~i~ 139 (432) T protein:vir:10 69 L----PLKIYQEDEYGIQRGTKHYLNNLLRL--RPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR---KGKVQALWPID 139 (432) T ss_pred C----ceEEEEecCCceeeccccHHHHHHHh--hccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC---CCcEEEEEEEc Confidence 2 2221 1111 11 2333332 0011 11334555666777899999999884 24445677788 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |..+-+..+.+..- ....++.|. . ...|. ..+ T Consensus 140 ~~~v~v~~d~~~~~---------------------~~~~~~~y~-~-~~~g~-------~~~------------------ 171 (432) T protein:vir:10 140 ASKVTVYIDDVGLL---------------------NSKTKMWYV-V-NTGGQ-------QRV------------------ 171 (432) T ss_pred CceeEEEEcCcccc---------------------cccceEEEE-E-ecCCe-------EEE------------------ Confidence 88776655443110 000011111 0 00010 000 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) + + .==|+||++..+.+...|.|-++-+...+........-......-.+.|-..++..... T Consensus 172 ------~---------~----~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l 232 (432) T protein:vir:10 172 ------L---------K----PEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL 232 (432) T ss_pred ------E---------c----cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC Confidence 0 0 00189998765667788998887776666555333333333333355675444322222 Q ss_pred CCCC--c-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 309 DSRG--N-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 309 d~~G--~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) +++- + ..-|+ -+-|.+.-++.+-+|..++..+.=..+.+..+...+.|+..-++|.+-+|..+.++..+-. T Consensus 233 ~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e 312 (432) T protein:vir:10 233 NEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIE 312 (432) T ss_pred CHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH Confidence 2210 0 01111 1235566688888999999766666678888999999999999999999966544321111 Q ss_pred H-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 380 A-----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLEL 454 (527) Q Consensus 380 A-----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l 454 (527) . ++-.+.|++. .+++. +-..+|...+ ......+.+.+...+-.|.++.++...++ T Consensus 313 ~~~~~~~~~~l~P~~~-----------~ie~~---ln~kLl~~~~------~~~g~~~~fd~~~l~~~d~~~~~~~~~~~ 372 (432) T protein:vir:10 313 QQQQQFYTDTLQATLT-----------MYEQE---MTYKLFLDSE------LDKGFYSKFNVDAILRADIKTRYEAYRTG 372 (432) T ss_pred HHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcChhh------cCCCcEEEeechhhhcCCHHHHHHHHHHH Confidence 1 1111122111 11111 1111221111 11223456667788888999999999999 Q ss_pred HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 455 WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 455 ~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +.+|+++..++.++| |++|-+ .-.+...-.-....+ ++++. ..-+.+-+.|......+|+ T Consensus 373 ~~~G~~t~NE~R~~~----g~~pi~-ggD~~~~~~n~~~~~--~~~~~---~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 373 IQGGFLKPNEARSKE----DLPPEA-GGDRLLVNGNMLPID--MAGQA---YLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HhCCCcCHHHHHHHh----CCCCCC-CCCeEeecccccchh--hcccc---ccCCCCCCCCCCCCCCCCC Confidence 999999999999876 444422 111100000000000 01000 0001111122222333333 No 164 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=97.59 E-value=4.1e-05 Score=44.65 Aligned_cols=406 Identities=10% Similarity=0.053 Sum_probs=180.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.+--|- ...-.|..+.....-.++.. ...+ .++...+..-.. | -.+++.....+| +|-.+|-+.++- T Consensus 1 M~~~~r~-~~~~~~~~r~~~~~~~~~~~-~~~~------~~~~g~~~~~~~-v-~~~~al~~~~v~--~~i~~ia~~ia~ 68 (432) T protein:vir:10 1 MKIVDSV-KKFFNFEKRQTSQVIELNKD-DEKL------LEWLGISPSTIS-V-KGKNALKVATVF--ACIKILSESVSK 68 (432) T ss_pred CChHHHH-HHhcCccccCcccccccCCc-hHHH------HHHhCCCcCccc-c-chhhhhccHHHH--HHHHHHHHhhcc Confidence 6654331 00001122222100111111 1111 222222211111 1 112222211122 222222222222 Q ss_pred hccCccccc---cCcc-hh-----HHHHHHHHHHhcC---chhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 81 LGQGLKWEF---SKKD-AK-----VDDAIRVLFDREN---WEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 81 Lg~~~~~~i---~~~~-~~-----v~~~lr~w~~~e~---l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) | +..+ ...+ .+ +...|+. ..|. ...-+.......++.|.++..+.+|. .|+-+.+..++ T Consensus 69 l----p~~~~~~~~~~~~~~~~~~l~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~---~G~~~~L~~i~ 139 (432) T protein:vir:10 69 L----PLKIYQEDEYGIQRGTKHYLNNLLRL--RPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDR---KGKVQALWPID 139 (432) T ss_pred C----ceEEEEecCCceeeccccHHHHHHHh--hccCCCCHHHHHHHHHHHHhhcCCeEEEEEECC---CCcEEEEEEEc Confidence 2 2221 1111 11 2333332 0011 11334555666777899999999884 24445677788 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |..+-+..+.+..- ....++.|. . ...|. ..+ T Consensus 140 ~~~v~v~~d~~~~~---------------------~~~~~~~y~-~-~~~g~-------~~~------------------ 171 (432) T protein:vir:10 140 ASKVTVYIDDVGLL---------------------NSKTKMWYV-V-NTGGQ-------QRV------------------ 171 (432) T ss_pred CceeEEEEcCcccc---------------------cccceEEEE-E-ecCCe-------EEE------------------ Confidence 88776655443110 000011111 0 00010 000 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) + + .==|+||++..+.+...|.|-++-+...+........-......-.+.|-..++..... T Consensus 172 ------~---------~----~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l 232 (432) T protein:vir:10 172 ------L---------K----PEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL 232 (432) T ss_pred ------E---------c----cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC Confidence 0 0 00189998765667788998887776666555333333333333355675444322222 Q ss_pred CCCC--c-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 309 DSRG--N-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 309 d~~G--~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) +++- + ..-|+ -+-|.+.-++.+-+|..++..+.=..+.+..+...+.|+..-++|.+-+|..+.++..+-. T Consensus 233 ~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e 312 (432) T protein:vir:10 233 NEDAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIE 312 (432) T ss_pred CHHHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH Confidence 2210 0 01111 1235566688888999999766666678888999999999999999999966544321111 Q ss_pred H-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 380 A-----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLEL 454 (527) Q Consensus 380 A-----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l 454 (527) . ++-.+.|++. .+++. +-..+|...+ ......+.+.+...+-.|.++.++...++ T Consensus 313 ~~~~~~~~~~l~P~~~-----------~ie~~---ln~kLl~~~~------~~~g~~~~fd~~~l~~~d~~~~~~~~~~~ 372 (432) T protein:vir:10 313 QQQQQFYTDTLQATLT-----------MYEQE---MTYKLFLDSE------LDKGFYSKFNVDAILRADIKTRYEAYRTG 372 (432) T ss_pred HHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcChhh------cCCCcEEEeechhhhcCCHHHHHHHHHHH Confidence 1 1111122111 11111 1111221111 11223456667788888999999999999 Q ss_pred HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 455 WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 455 ~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +.+|+++..++.++| |++|-+ .-.+...-.-....+ ++++. ..-+.+-+.|......+|+ T Consensus 373 ~~~G~~t~NE~R~~~----g~~pi~-ggD~~~~~~n~~~~~--~~~~~---~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 373 IQGGFLKPNEARSKE----DLPPEA-GGDRLLVNGNMLPID--MAGQA---YLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred HhCCCcCHHHHHHHh----CCCCCC-CCCeEeecccccchh--hcccc---ccCCCCCCCCCCCCCCCCC Confidence 999999999999876 444422 111100000000000 01000 0001111122222333333 No 165 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=97.54 E-value=4.7e-05 Score=44.29 Aligned_cols=397 Identities=11% Similarity=0.075 Sum_probs=175.4 Q ss_pred CCCChhh---hhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQ---YGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~q---y~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~ 77 (527) |++=.|+ +....+.-.+... +..+.....+.. +-..++.-..| ....+-.. |.....|+.+ T Consensus 7 mg~f~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~~g~~v-~~~~al~~-----~~V~~~i~~I 70 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPVDIGGGQ--TFTPVNATARDL--------GIIISDTGAAV-NADAIMRL-----DAVAACVKLV 70 (432) T ss_pred cchhhhhhhhccccccccccccc--ccccCccchhhh--------cccccccCccc-chHhhhcc-----HHHHHHHHHH Confidence 5554443 1111111111112 223333222211 10111111111 01111111 1111223332 Q ss_pred hhhhccCccccc---cCcc-hh-HHHHH-HHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 78 MRFLGQGLKWEF---SKKD-AK-VDDAI-RVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 78 ~~~Lg~~~~~~i---~~~~-~~-v~~~l-r~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) ++-++ ..+..+ ...+ .+ .+..| +-+-.+-| +. .-........++.|.|+..+.++. |+-+.+..+ T Consensus 71 a~~ia-~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~----g~~~~L~~l 145 (432) T protein:vir:81 71 SQAIA-AMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD----GRIESLQYL 145 (432) T ss_pred HHhhh-hCceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC----CcEEEEEEE Confidence 22221 112221 1111 11 11111 11212212 11 223445556677899977777763 334556677 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|+.+-+..++++. + .+.|... +|.. .+ T Consensus 146 ~~~~v~v~~~~~g~--~-----~y~~~~~---------------------~g~~-------~~----------------- 173 (432) T protein:vir:81 146 ANDRLTITTDPKGN--T-----AYRYRRT---------------------DGQM-------ID----------------- 173 (432) T ss_pred cCCceEEEECCCCc--E-----EEEEEec---------------------CceE-------EE----------------- Confidence 77776665544321 0 0011110 1100 00 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCceEEecc Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLGFYATDS 304 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P~~~~~g 304 (527) ++ .==|+||++.+.+ .+.|.|-|+-+.. +|+..+.-...+..+ .+.|-.+++- T Consensus 174 ----------------~~----~~~iih~r~~~~d-g~~G~spi~~~~~---~i~~~~~~~~~~~~~f~ng~~~~gil~~ 229 (432) T protein:vir:81 174 ----------------IP----KQQIWKIMGYSLD-GENGLSAIRYGAQ---IFGTAIAAEAQAARAFRNGQLQSVYYQI 229 (432) T ss_pred ----------------Ec----cccEEEecCCCCC-CcccccHHHHHHH---HHHHHHHHHHHHHHHHhcCCCcceEEec Confidence 00 0026788876444 4778877655444 443333333333333 3455333321 Q ss_pred CCCcCCCC--cc-ccee--cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 305 APPRDSRG--NM-VPWT--ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 305 ~~~~d~~G--~~-~p~~--v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) ....+++- +. .-+. ..-|.++-|+++.+|..+...++-..+.+..+...+.|+..=++|.+-+|-.+.++-..|. T Consensus 230 ~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~s 309 (432) T protein:vir:81 230 DRFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGS 309 (432) T ss_pred CCCCCHHHHHHHHHHHhhhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccc Confidence 11122100 00 0111 2346677789999999999877777788889999999999999999999966543322222 Q ss_pred HHH--------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 380 ALD--------LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQL 451 (527) Q Consensus 380 ALq--------l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~ 451 (527) .++ ..+.|++. .+++.+ -..++ .......+.+++.....+..|.++.++.. T Consensus 310 n~eq~~~~f~~~tl~P~~~-----------~ie~~l---~~kLl-------~~~~~~~~~~~fd~~~llr~d~~~r~~~~ 368 (432) T protein:vir:81 310 GIESQQLGFLTMTLSPWLR-----------RIEQSI---ALNLL-------SPAERRRYFADFDTSALLRADSAARSSYY 368 (432) T ss_pred hHHHHHHHHHHHHHHHHHH-----------HHHHHH---Hhhcc-------CccccCceEEEeechhhhccCHHHHHHHH Confidence 222 12222221 122211 11111 11111234566667788888999999999 Q ss_pred HHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 452 LELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 452 v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) .++.++|+++.-++.++| |.+|.+....... ...-..-...++........++.|++++..++. T Consensus 369 ~~~~~~G~~t~NE~R~~~----glpp~~g~~~~~~--~~~~~~pl~~~~~~~~~~~~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 369 SQLVNNGLMTRDEAREIE----GLPKLGGNAAVLT--VQSAMVPLDSIGLQASPEPASGLGNQQQDKVSK 432 (432) T ss_pred HHHHhCCCCCHHHHHHHh----CCCCCCCCcceEe--ecCcccchhhhccCCCCCCCCCCCCcccccccC Confidence 999999999999999987 5555443211100 000000000111122222233334443333333 No 166 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=97.54 E-value=4.8e-05 Score=44.27 Aligned_cols=448 Identities=11% Similarity=0.060 Sum_probs=218.5 Q ss_pred CCCChh-hhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccc-cccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKR-QYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGD-QRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~-qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~-~~~~~~p~~~k~v~~~~ 78 (527) |--..+ -|+ -+++ ..-+.+.+.|.+|..-+-. .-.|++.+. ....|.+-|.+.+++.+ T Consensus 1 mk~~~~~~~~----~lkR------------~~~e~~w~e~a~~tlP~~~----~~~~~~~~~~~~~~~dstg~~a~~~LA 60 (510) T protein:vir:63 1 MKTTAAMLWE----KLRD------------GSVEQRAIEFAKTTLPYLM----VDPMSGSRGVVEHDFQSAGALLVNNLA 60 (510) T ss_pred ChhHHHHHHH----HHhc------------cchHHHHHHHHHhhccccC----CCCCCccccccCCCccchHHHHHHHHH Confidence 322111 122 1111 1125667778888765310 011222222 24468888999999988 Q ss_pred hhhccC-----cccc-ccCcc-------------hhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEEEEe Q lcl|Aclame:pro 79 RFLGQG-----LKWE-FSKKD-------------AKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLLLIG 132 (527) Q Consensus 79 ~~Lg~~-----~~~~-i~~~~-------------~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~ 132 (527) +.|+.+ .+|| ++..+ ++|+++ +..-+.+.|+...+-++=+..++-|-+++++- T Consensus 61 a~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~l~~~- 139 (510) T protein:vir:63 61 AKLARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYRD- 139 (510) T ss_pred HHHHhhhcCCCCcccccCCChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEEc- Confidence 887532 2454 22211 234443 34466688999999998889888899876543 Q ss_pred cCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeec Q lcl|Aclame:pro 133 DDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEE 212 (527) Q Consensus 133 d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~ 212 (527) + + +.|+ +.+.-+.|.-..|.. |+|..|+.-..+.- .. ...++.+ ...+ -.....|- ..+. . T Consensus 140 -~-~--~~~~--~~~pl~~y~v~~d~~--G~vd~i~rr~~~t~-~~--l~e~~~~--~~~~-~~~~~~~~--~~v~--v- 200 (510) T protein:vir:63 140 -S-D--AATV--VAWSLRSYAVRRDAT--GRWMDIVLKQRYKS-KD--LDEEYKQ--DLMR-AGRNLSGS--GSVD--L- 200 (510) T ss_pred -C-C--CcEE--EEEEcceeEEeeCCC--cCeeEEEeeeeccH-HH--HhHHhhh--hhhc-cccccCCC--cceE--E- Confidence 3 2 2344 345445555556554 56666653322210 00 0000000 0000 00011111 1111 1 Q ss_pred ccccccccccccccccccceeeec---cCcccc-cccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHH Q lcl|Aclame:pro 213 LYEPGKWDDRPESPLEPDDIKKLS---TLTEEE-PLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDE 288 (527) Q Consensus 213 ~~~~g~wd~~~~~~~~~~~~~~~~---~~~~e~-~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~ 288 (527) ++...+.+...+ ++.++. ++.+.- .--.|+...|++.++=...++++||+|=.++.++=+..||+.--.. T Consensus 201 -~~~V~~~~~~~~-----~~~sv~~e~dg~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~ 274 (510) T protein:vir:63 201 -YTHVQRKKGTAM-----EYAELYHEIDGVRVGKEGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLLSEKL 274 (510) T ss_pred -EEEEEeecCCCc-----eEEEEEEEecCceeccccccccccCceeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHH Confidence 111112211111 122211 222221 1223456689999999888999999999999999999998887777 Q ss_pred HHHHHHhCCce-EEe-ccCCCcCCCCccccee-cCCCeeEecCCC-CceEEeccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 289 DLIMVFGGLGF-YAT-DSAPPRDSRGNMVPWT-ISPLGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 289 ~~i~~~~g~P~-~~~-~g~~~~d~~G~~~p~~-v~pg~~~el~~~-~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) -..+...-.|+ .+- +|. .++..+. .++|.++.-..+ -+..++...+++...++-++.+..+|...= T Consensus 275 l~~a~~a~~~~~lv~p~g~------~~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~af---- 344 (510) T protein:vir:63 275 GLYELESLEVLNLVDEAKG------AVVDDYQDAEMGDYVPGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQAF---- 344 (510) T ss_pred HHHHHHhccCCcccCcccc------cchhhhccCCCceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHH---- Confidence 77777766664 322 222 1222111 223444432222 233444444577777778888887777641 Q ss_pred hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccc-----cceeEE-EEeCC Q lcl|Aclame:pro 365 IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDAD-----KKLTVT-ITFRD 438 (527) Q Consensus 365 va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~-----~~~~v~-v~w~d 438 (527) +.......++.-.|=++. .++++|...++.++.++..+++.-++.+.-.++..... ..+... |++ T Consensus 345 --~~~l~~~~~~rvTAtEV~-----~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~gl~p~p~~~~~~~~v~~-- 415 (510) T protein:vir:63 345 --MYGANQRDAERVTAEEVR-----ITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDALLQGLITKQHKPAIETG-- 415 (510) T ss_pred --HhhcccCCCCCcCHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchhcccceecc-- Confidence 111111111111243433 56788888889888888777766555443222222111 111111 222 Q ss_pred CCCCCHHHHHHHHHH----HHhcCC-------ccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHH----HHHH Q lcl|Aclame:pro 439 PKPVNNEKRFAQLLE----LWEAGL-------IPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGI----AQAE 498 (527) Q Consensus 439 ~lP~D~~~~i~~~v~----l~~aGl-------ls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~----~~~a 498 (527) ..|-.+.+.++.+.. +-..+- |-.+.+++.+.++.|.+| +.++++++.+...+++. .+++ T Consensus 416 is~Laraq~~~~l~~~~q~l~~~~~~aq~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~~ 495 (510) T protein:vir:63 416 LPALSRSAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEQQRQQAAQAQAAQET 495 (510) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHhCCChhHhcCCHHHHHHHHHHHHHHHHHHHHHHHH Confidence 233344444443322 222222 457888999988888755 67776665433222211 1112 Q ss_pred hcCcccccccccCCC Q lcl|Aclame:pro 499 AADPFGAQMAAEQGI 513 (527) Q Consensus 499 a~d~~g~~~~~d~g~ 513 (527) +..-.|+-+.+-.|. T Consensus 496 ~~~~a~~~~~~~~g~ 510 (510) T protein:vir:63 496 LLEGASDMTNALAGV 510 (510) T ss_pred HHHHHHhhcccccCC Confidence 222111111122233 No 167 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=97.51 E-value=5.3e-05 Score=44.04 Aligned_cols=418 Identities=9% Similarity=0.037 Sum_probs=164.0 Q ss_pred hhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccc--cCCchhHHHHhhhhhhccCccccccCc Q lcl|Aclame:pro 15 RAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPI--YVPNGEKLIEAKMRFLGQGLKWEFSKK 92 (527) Q Consensus 15 ~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~--~~p~~~k~v~~~~~~Lg~~~~~~i~~~ 92 (527) +-.+ +++++.=+.-.|+++-....+++..+.+++- -+.=+-...... .-+.....|+..+..+ -++++.+... T Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~pp~~~~~La~~~~~n~~v~scI~~ia~~i-a~~~~~i~~~ 75 (540) T protein:vir:41 1 MFNY--HLSIKSLEKYRAIKGDTDSQALKEDRFEEYV--EPKVHPLVLLSLLQVNPYHASACSIKANDI-LRTGYLIDGD 75 (540) T ss_pred CCCc--ccChhhccchhhhhccccccccccCCCCccc--cCCCCHHHHHHHHHhcHHHHHHHHHHHHHH-hcCCceEecC Confidence 1111 1122221111122222222222222211110 000000000000 0001123444444444 3445555555 Q ss_pred chhHHHHHHHHHHhcCc--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEE Q lcl|Aclame:pro 93 DAKVDDAIRVLFDRENW--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLV 170 (527) Q Consensus 93 ~~~v~~~lr~w~~~e~l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a 170 (527) ...+...+. ..++ ..-+.+.....++.|.|++.+..+. + |+-+.+..++|.++-...+++ +. +. T Consensus 76 ~~~~~~~lp----N~~~t~~~f~~~~v~dlll~Gnayv~i~r~~-~--G~~~~L~~i~~~~V~v~~~~~--~~---~~-- 141 (540) T protein:vir:41 76 DGGVEELLR----ACRPSFEFILLQALEDLQVFNYCTLEVVRDD-Q--GEPVRLDYIPAHTVRVHRDGS--RY---MQ-- 141 (540) T ss_pred ccchhhhcc----CCCCCHHHHHHHHHHHHHhcCCeEEEEEECC-C--CcEEEEEEeCCcceEEeEcCc--ee---Ee-- Confidence 554444331 1111 1233455566777899988888875 2 344567778888876554433 10 00 Q ss_pred EeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccc Q lcl|Aclame:pro 171 DEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITT 250 (527) Q Consensus 171 ~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~ 250 (527) ..++.. ..|.+.+.... .+... .++....+| . T Consensus 142 ----~~d~~~--------~~~~~~~~~~~------~~~~~--------------------------~g~~~~~~~----~ 173 (540) T protein:vir:41 142 ----TWDGIH--------VTYFKDYRYEG------EVNPD--------------------------NGEDQDGVG----A 173 (540) T ss_pred ----eecCce--------eeeeecccccc------eeecc--------------------------ccccceeec----c Confidence 111000 01111111000 00000 000000011 1 Q ss_pred cceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCce--EEeccCCCcCCC----------------- Q lcl|Aclame:pro 251 LPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGF--YATDSAPPRDSR----------------- 311 (527) Q Consensus 251 iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~--~~~~g~~~~d~~----------------- 311 (527) =-|+||++..+.+..+|.|.+.-+...+........-......-.+.|- +.+.|....... T Consensus 174 ~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~~~~~~~~~ 253 (540) T protein:vir:41 174 NEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTGRTVLQGLI 253 (540) T ss_pred cceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHHHHHHHHHH Confidence 1378999887778889999777655544443322222222222234563 333333211100 Q ss_pred -CcccceecCCCeeEec------CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc-ccHH-H-- Q lcl|Aclame:pro 312 -GNMVPWTISPLGMVEH------GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA-ESGI-A-- 380 (527) Q Consensus 312 -G~~~p~~v~pg~~~el------~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a-~SG~-A-- 380 (527) ++..-..-.+|.+.-| +++-+|..+...+.=..|.+..+...+.|..+=++|++-+|-.+.++. -|.+ . T Consensus 254 ~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n~sn~eq~~ 333 (540) T protein:vir:41 254 EDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLGGNFAEVAR 333 (540) T ss_pred HHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCCcccHHHHH Confidence 0000001123443323 244588888877766778899999999999999999999996653321 1111 1 Q ss_pred ---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 381 ---LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 381 ---Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) ++-.+.|++.+ +++.+... +++ .... ...|.|...-..+ ........+++++ T Consensus 334 ~~f~~~tL~P~~~~-----------ie~~ln~~---L~~--------~~~~--~~~i~f~~~~ll~-~D~~~~~~~lv~~ 388 (540) T protein:vir:41 334 RTYYESVVRPQQEI-----------VSSVLTDF---IQL--------KLDP--GARFVFNEEILME-SEFVHNYALLVQC 388 (540) T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHh---hhh--------ccCC--ceEEEecchhhcc-hHHHHHHHHHHhC Confidence 11223333321 22211111 111 1111 1344455443332 2233456678999 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHH----HHHHHHHH----------------HHHHHHhcCccccccc-------cc Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQ----ATEDKKTQ----------------GIAQAEAADPFGAQMA-------AE 510 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~----~~e~~a~~----------------a~~~~aa~d~~g~~~~-------~d 510 (527) |+++.-++.+.|. |.++-.+..-. .....+.+ +..+.+.......+.- -| T Consensus 389 G~lT~NE~Re~L~---g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (540) T protein:vir:41 389 GVLTPSEVREKLF---GLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDKKKKID 465 (540) T ss_pred CCCCHHHHHHHhC---cCcCCCcccccccccccccccccccccCCCCccccccccchhcccccCcccccccccccccccc Confidence 9999999987651 22221111100 00000000 0000000000000000 00 Q ss_pred CCCCcccccccCCCCCC Q lcl|Aclame:pro 511 QGIPDEEDDQALNGQPL 527 (527) Q Consensus 511 ~g~~d~~~~~~~~~~~~ 527 (527) .+--|+..+-.++|..+ T Consensus 466 ~~~~~~~~~~~~~~~~~ 482 (540) T protein:vir:41 466 EVLSDFRAEAYENGKKM 482 (540) T ss_pred ccccccCCccccchhHH Confidence 00001111222222222 No 168 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=97.47 E-value=6e-05 Score=43.72 Aligned_cols=463 Identities=14% Similarity=0.120 Sum_probs=217.0 Q ss_pred CCCChhh-hhhhh-HHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQ-YGSTQ-QLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~q-y~~~~-~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |-...++ ++... .+.+.+..+ -.....-+.+++.|.+|..-+- ..-+|+.. ...++|.+-|.+.+++.+ T Consensus 1 ~~~~~~~~~~~~~~~l~~r~~~L----~~~R~~~e~~w~e~a~~~lP~~----~~~~~~~~-~~~~~~dstg~~a~~~LA 71 (516) T protein:vir:10 1 MKQSTDLEYGGKRSKIPKLWEKF----STKRSSFLDRAKHYSKLTLPYL----MNDKGDNE-TSQNGWQGVGAQATNHLA 71 (516) T ss_pred CCchhhHhhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhcccc----cCCCCCcc-cccccccchHHHHHHHHH Confidence 5544433 22111 222223221 0111222778888999886641 11123332 233688899999999988 Q ss_pred hhhccC-----cccc-ccCc-------------chhHHHHH-------HHHHHhcCchhhHHHHhHhhhhcccEEEEEEe Q lcl|Aclame:pro 79 RFLGQG-----LKWE-FSKK-------------DAKVDDAI-------RVLFDRENWEQKFESLKRWTEIRGDYVLLLIG 132 (527) Q Consensus 79 ~~Lg~~-----~~~~-i~~~-------------~~~v~~~l-------r~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~ 132 (527) +-|+.+ .+|| ++.. ..+|+++| ..-+.+.|+...+-++=+..++-|-|+.++ T Consensus 72 a~l~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~-- 149 (516) T protein:vir:10 72 NKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCMLYK-- 149 (516) T ss_pred HHHHhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeEEe-- Confidence 877532 2554 2221 12244433 345567889988999888888889998544 Q ss_pred cCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEe---eeCCCCccceeeeeeeeeeeeeecCCccccCCccce- Q lcl|Aclame:pro 133 DDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDE---YPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIK- 208 (527) Q Consensus 133 d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~---~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~- 208 (527) |+ ++ + ++.+.-+.|+-..|.. |+|..|+.-.. +..++.- . ++. .+..+... ..| ...+. T Consensus 150 d~-~~---~--~~~~pl~~y~v~~d~~--G~v~~ivrr~~~~~~~l~e~~--~-~~~--~~~~~~~~--~~~--~~~~~i 212 (516) T protein:vir:10 150 PS-KG---A--ISAIPMHHYVVNRDTN--GDLLDIILLQEKSLRTFDPAT--R-AVV--EVGLKGKK--CKE--DDSIKL 212 (516) T ss_pred cC-CC---C--eEEEEcCeEEEeeCCC--CCeEEEeeeecccHHHHHHHh--h-hhh--hhhhhhhc--cCC--CCceEE Confidence 43 32 2 3445556666666554 55666542111 1111110 0 000 00000000 001 11111 Q ss_pred eeeccccccc-ccccccccccccceeeeccCccc-ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHH Q lcl|Aclame:pro 209 YTEELYEPGK-WDDRPESPLEPDDIKKLSTLTEE-EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMT 286 (527) Q Consensus 209 ~~~~~~~~g~-wd~~~~~~~~~~~~~~~~~~~~e-~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~ls 286 (527) ++...|...+ |- +..-.++... ..--.|+...|++.++=...++++||+|=.++.++=+..||+.-- T Consensus 213 ~t~v~~~~~~~~~-----------~~~~~d~~~~~~~s~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~L~D~k~L~~l~~ 281 (516) T protein:vir:10 213 YTHAKYLGEGFWE-----------LKQSADDIPVGKVSKIKSEKLPFIPLTWKRSYGEDWGRPLAEDYSGDLFVIQFLSE 281 (516) T ss_pred EEEEEecCCCceE-----------EEEeeCceeeccccccccccCCeeeeeeeecCCCCcccchHHHhhHHHHHHHHHHH Confidence 1111221111 10 0110111111 111234567899999998889999999999999999999987777 Q ss_pred HHHHHHHHhCCceEEeccCCCcCCCCcccceecC-CCeeEecCCCC-ceEEeccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 287 DEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTIS-PLGMVEHGQNN-KIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 287 d~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~-pg~~~el~~~~-k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) ..-..+.....|++-. +| ++..++..+..+ .|.++.-..++ +..++...+++...++-++.+..+|...==+- T Consensus 282 ~~l~~~~~a~~~~~lv---~p-~g~~~~~~l~~~~~g~~~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~~rI~~af~~~- 356 (516) T protein:vir:10 282 AVARGAALMADIKYLI---RP-GAQTDVDHFVNSGTGEVVTGVEEDIHIVQLGKYADLTPISAVLEVYTRRIGVVFMME- 356 (516) T ss_pred HHHHHHHHhcCCCccc---Cc-ccccchhhhccCCCceeecCCcccceeeecCcccchHHHHHHHHHHHHHHHHHHhhh- Confidence 7777777777765332 11 122233222222 24443322222 23444444577777777888877776531110 Q ss_pred hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc-ceeEEEEeCCCCCCC Q lcl|Aclame:pro 365 IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADK-KLTVTITFRDPKPVN 443 (527) Q Consensus 365 va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~-~~~v~v~w~d~lP~D 443 (527) .+...|.-.. .|=+ +..++++|+..++.+++++..+++.-++.+......-..+. -+.+.++ ....|-- T Consensus 357 -~l~~rd~~rv---TAtE-----V~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~~~p~~P~~lv~~~~v-~~i~~L~ 426 (516) T protein:vir:10 357 -TMTRRDAERV---TAVE-----IQRDALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGDSFTSDLVDPVII-TGIEALG 426 (516) T ss_pred -hhhccCCccc---cHHH-----HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCChhhcCccee-hhHHHHH Confidence 0111122111 1333 34788999999999999988887665554422111111010 0011111 0112222 Q ss_pred HHHHHHHHHHHHh-----c-------CCccHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHHHHhcCcccccc Q lcl|Aclame:pro 444 NEKRFAQLLELWE-----A-------GLIPAKKLTEELSKIMGFEL----TEEDFRQATEDKKTQGIAQAEAADPFGAQM 507 (527) Q Consensus 444 ~~~~i~~~v~l~~-----a-------Glls~~ta~~~L~~~g~~~~----~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~ 507 (527) +.+.++.+....+ + -.+-.+.+++.+.++.|.+. +.++++++ +.++++..+.+.+.+.... T Consensus 427 raq~~~~i~~~~q~i~~~~q~~p~v~d~id~d~~~~~~a~~~gvp~~~irs~eev~~~--r~~~~~~q~~~~~~~~~~~- 503 (516) T protein:vir:10 427 RMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMEQE--QEAQMQAQQAQMLEEGVAK- 503 (516) T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHhhcCHHHHHHHHHHHhCCChhccCCHHHHHHH--HHHHHHHHHHHHHHHHhhh- Confidence 3333333322221 1 11344556777777777655 44444443 2222111111112111111 Q ss_pred cccCCCCccccccc Q lcl|Aclame:pro 508 AAEQGIPDEEDDQA 521 (527) Q Consensus 508 ~~d~g~~d~~~~~~ 521 (527) +-++++.++-- ++ T Consensus 504 ~~~~~~~~~~~-~~ 516 (516) T protein:vir:10 504 AVPGVIQQELK-EA 516 (516) T ss_pred cccchhhhhhh-cC Confidence 12222222211 11 No 169 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=97.46 E-value=6.2e-05 Score=43.64 Aligned_cols=402 Identities=13% Similarity=0.048 Sum_probs=175.4 Q ss_pred HHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEee-----ecCCcccccccccCCchhHHHHhhhhhhccCc-- Q lcl|Aclame:pro 13 QLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVI-----LRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGL-- 85 (527) Q Consensus 13 ~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i-----~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~-- 85 (527) -+|+|+-- -.-|..-+.+-. ..+.|...+..-..+ +.++..... ..|-++++++.-.. T Consensus 1 ~~~~~~~~--~~~p~~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---------~~V~acV~~IA~~iA~ 65 (518) T protein:vir:10 1 MLLANGQT--LSAPAMAELSPQ----MQDSYYYAPAVGMQLERQFSLYGGIYKNQ---------PWVRTVIAKRAQALAR 65 (518) T ss_pred CcccCcee--ecCchhhhhhhh----hhcccccccccceecccccchhhHHHhhh---------HHHHHHHHHHHHhhcc Confidence 34444433 111211111111 112222221111111 111111111 12333333332111 Q ss_pred -c---ccccCcc--hhHHHHHHHHHHhcCch----hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEE Q lcl|Aclame:pro 86 -K---WEFSKKD--AKVDDAIRVLFDRENWE----QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPY 155 (527) Q Consensus 86 -~---~~i~~~~--~~v~~~lr~w~~~e~l~----~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~ 155 (527) + |..+..+ +.....+..+..+-|-. .-........++.|.|+..|..|. + |+-+.+..++|+.+-+. T Consensus 66 lpl~l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~-~--G~~~~L~~l~p~~v~v~ 142 (518) T protein:vir:10 66 LPVKCMFTSGDTETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNK-S--GTPEKLMPMHPSRVAIK 142 (518) T ss_pred CceEEEEEcCCCceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C--CcEEEEEEECCCceEEE Confidence 1 1112122 11233344444433322 223344556667899988888774 2 33345777888877666 Q ss_pred ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeee Q lcl|Aclame:pro 156 EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKL 235 (527) Q Consensus 156 ~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~ 235 (527) .+.+... ..++ +...+.. +....+ + T Consensus 143 ~~~~~~~--~~y~----~~~~~~~-------------------------~~~~~~---~--------------------- 167 (518) T protein:vir:10 143 RNSRTGR--YEYY----FQAGAGV-------------------------GTQLVS---F--------------------- 167 (518) T ss_pred EcCCCCE--EEEE----EEecCCc-------------------------cceEEE---e--------------------- Confidence 5543211 1111 1111000 000000 0 Q ss_pred ccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC-c- Q lcl|Aclame:pro 236 STLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG-N- 313 (527) Q Consensus 236 ~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G-~- 313 (527) |- ==|+||++..+++.+.|.|-|+-+...+......-.-......-.|.|-.+++.....+++- + T Consensus 168 -----------~~--~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~ 234 (518) T protein:vir:10 168 -----------AD--DEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSEAAQQR 234 (518) T ss_pred -----------cC--CcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHH Confidence 00 01788988766666779987766555544443333333333333566754443322222210 0 Q ss_pred -cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH------ Q lcl|Aclame:pro 314 -MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA------ 380 (527) Q Consensus 314 -~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A------ 380 (527) ..-|+ -+.|.+.-|+++-+|..+...+.=..+.+..+...+.|...=++|++-+|..+.+.- |++. T Consensus 235 ~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~-sn~eq~~~~f 313 (518) T protein:vir:10 235 LREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATF-SNISAQMRAF 313 (518) T ss_pred HHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCc-hhHHHHHHHH Confidence 01121 123556668889999999976666668888888899999999999999996654322 2211 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) ++-.+.|++. .+++.+ -..++..+ .....+++.....+-.|.++.++...+++.+|++ T Consensus 314 ~~~tL~P~l~-----------~ie~~l---n~~L~~~~--------~~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~l 371 (518) T protein:vir:10 314 YRDTMAIPIA-----------RIQSAM---DKYVGQYW--------VRKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVA 371 (518) T ss_pred HHHHHHHHHH-----------HHHHHH---HHhhcccc--------cCCceEEEechhhhccCHHHHHHHHHHHHhCCCc Confidence 1111222211 122211 11111111 1122355556677888999999999999999999 Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HHHHHHHHhcCccccccc--cc-CCCCcccccccCCCCCC Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELTEEDFRQATEDKK-TQGIAQAEAADPFGAQMA--AE-QGIPDEEDDQALNGQPL 527 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~e~~~~~~~e~~a-~~a~~~~aa~d~~g~~~~--~d-~g~~d~~~~~~~~~~~~ 527 (527) +.-++.+++ |.+|-++.-....-.-. ..-+.......+.|.... .+ +.-|.++.|++.+.... T Consensus 372 T~NE~R~~~----Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (518) T protein:vir:10 372 TPNEGREIM----GLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVP 438 (518) T ss_pred CHHHHHHHh----CCCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCC Confidence 999998876 44443221110000000 000000000000000000 00 00011111221111111 No 170 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=97.45 E-value=6.4e-05 Score=43.58 Aligned_cols=404 Identities=12% Similarity=0.106 Sum_probs=177.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHH-HHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRL-YEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~-~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |++-.+-. .....- ..+...-..- ..+.. ...|+..-........-+.++-.....| +|-.+|-..++ T Consensus 1 MG~f~~lf-------~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~v~~~~al~~~~v~--~ci~~ia~~iA 69 (422) T protein:vir:13 1 MGFLRGLF-------NKKNNN-DEKRSNYDED-IGIDISDSNFWEKFGIKLNFSVRGKRALKENTVY--VCTKIRAESIG 69 (422) T ss_pred Cchhhhhh-------hccCCc-cchhhhhhhc-cccccCcchhhhhccccCCcccchhhhhccHHHH--HHHHHHHHhhh Confidence 77644322 111110 0000000000 00000 0011111000000001122221111121 12222222222 Q ss_pred hhccCccccccCcchh-----HHHHHHHHHHh-cCch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccce Q lcl|Aclame:pro 80 FLGQGLKWEFSKKDAK-----VDDAIRVLFDR-ENWE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPST 151 (527) Q Consensus 80 ~Lg~~~~~~i~~~~~~-----v~~~lr~w~~~-e~l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~ 151 (527) -| +..+-...++ +...|+. .. ..|. .-........++.|.|+..|..|. .|+-+.+..++|+. T Consensus 70 ~l----p~~~~~~~~~~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~---~G~~~~L~~i~~~~ 140 (422) T protein:vir:13 70 KL----SLKIYKDKEEYKEHELYYLLRY--KPNPLMSSINFWKCLETQRTLKGNAYAYIERDR---KGKIIGLYPINSDN 140 (422) T ss_pred hC----ceEEEecCcccccchHHHHHhh--hcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC---CCcEEEEEEECCcc Confidence 22 2222111111 2222221 11 1111 234445566778899988888885 24456788899999 Q ss_pred EEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccc Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDD 231 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~ 231 (527) +-++.+.+.. +...+ +..|+ .....|. ..+ T Consensus 141 v~~~~~~~~~--~~~~~-------------------~~~y~-~~~~~g~-------~~~--------------------- 170 (422) T protein:vir:13 141 VTKIIDDDNF--LSSLS-------------------KVWYV-VTDKNGK-------EHK--------------------- 170 (422) T ss_pred eEEEEcCCcc--eeccc-------------------eEEEE-EEeCCCe-------EEE--------------------- Confidence 8888776532 11110 00111 0000010 000 Q ss_pred eeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC Q lcl|Aclame:pro 232 IKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR 311 (527) Q Consensus 232 ~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~ 311 (527) ++ .=-|+|++...+.+..+|.|-++-+...+.-.+..-.-......-.+.|-..++-....+++ T Consensus 171 ------------~~----~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e 234 (422) T protein:vir:13 171 ------------LL----PDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDLDEK 234 (422) T ss_pred ------------Ec----ccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHH Confidence 00 11367887544557788988887777666544333322223333345675444322222211 Q ss_pred C-c-c-ccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHH Q lcl|Aclame:pro 312 G-N-M-VPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALD 382 (527) Q Consensus 312 G-~-~-~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALq 382 (527) . + . .-|+ -+-|.+.-++++.+|..++..+.-..+.+..+...+.|+..-++|+.-+|..+.++-.+ ++ T Consensus 235 ~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn---~e 311 (422) T protein:vir:13 235 AKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNN---LT 311 (422) T ss_pred HHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc---HH Confidence 0 0 0 0111 12355666888889999998777677888888889999999999999999665443211 11 Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccH Q lcl|Aclame:pro 383 LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPA 462 (527) Q Consensus 383 l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~ 462 (527) -+...++.. .+.--+.++-..+-..++..++.. ....+.+.+...+-.|.++.++...+++++|+++. T Consensus 312 ~~~~~f~~~------~l~P~~~~ie~~l~~~Ll~~~~~~------~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~ 379 (422) T protein:vir:13 312 EQQKDFYVT------TLQSSLTVYEQEIQDKLFSQYETL------QDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEA 379 (422) T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHhhCChhhhc------CCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCH Confidence 111111110 011111121112222233222111 11234555667777899999999999999999999 Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC Q lcl|Aclame:pro 463 KKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP 514 (527) Q Consensus 463 ~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~ 514 (527) -++.++| |.+|-+ .-.+. ...-......+++.. ....|+.|+. T Consensus 380 NE~R~~~----gl~p~~-ggD~~---~~~~n~~~l~~~~~~-~~~~g~~~g~ 422 (422) T protein:vir:13 380 NEARRRE----NLPPVE-GGDRL---LVNGNMIPIEMAGEQ-YKKGGEKGGK 422 (422) T ss_pred HHHHHHh----CCCCCC-CcCee---eeccCccchhhcccc-cccCCCcCCC Confidence 9999876 444432 21111 000000000011110 1112222222 No 171 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=97.41 E-value=7.2e-05 Score=43.28 Aligned_cols=397 Identities=12% Similarity=0.065 Sum_probs=176.6 Q ss_pred CCCChhhhhhhhH---HhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccccc------CCchh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQ---LRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIY------VPNGE 71 (527) Q Consensus 1 m~~~~~qy~~~~~---~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~------~p~~~ 71 (527) -|.--+|-+.+.. +..||.+ +|-=+|| +|++-.++...| .+--. T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~~-----~D~~lr~----------------------~gg~~~~~~~l~~~m~e~D~~v~ 62 (446) T protein:vir:98 10 TPAIRRRTIYAMEHLGLATSYLS-----EDGGYKR----------------------AGKPTYQQLSAWDEAAQTEPIIA 62 (446) T ss_pred chhhhhhhhhccccchhhcccCC-----cchHhhh----------------------cCCChHHHHHHHHHHHhcchHHH Confidence 1222222222211 1112211 1111111 233322222222 11112 Q ss_pred HHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccce Q lcl|Aclame:pro 72 KLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPST 151 (527) Q Consensus 72 k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~ 151 (527) -.+++.-.-+ .+.+|.|.-+++++.++++.|+..-.+..-+.- --+|+..|=+|.=+.|....+ +.+++ +.+|.-. T Consensus 63 s~l~~Rk~av-~~~~w~V~p~~~~~a~~v~~~l~~~~~~~~~~~-~ldai~~G~s~~Eivw~~~~g-~~~p~-~~~d~~~ 138 (446) T protein:vir:98 63 QGLDSIALSV-LNKVGPYQHGDKRIKKFIDDQLRNRAKTWISHC-VKSIMTYGFSLSEQIYAHGAR-DNMPA-TVLDDIV 138 (446) T ss_pred HHHHHHHHHh-hcCCceecCccHHHHHHHHHHHhhcCchhHHHH-HHHHHhhCceeeeEEEeeccc-ccccc-hhhcccc Confidence 2444422222 455999988888888899999975444332222 358888999999999986443 22211 0011000 Q ss_pred EEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc- Q lcl|Aclame:pro 152 YFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD- 230 (527) Q Consensus 152 ~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~- 230 (527) .+ ++..+ +|.-+++. .-+. + ...+...|.-+.|.... +.+.. T Consensus 139 ~~---------~~~~~----r~~~~~~~--------------------~~~~-~-~~~~~~~~~~~~~~~~~--~~~~~~ 181 (446) T protein:vir:98 139 NY---------HPLQV----MLIANDNG--------------------RIVD-G-DTVTASQYKSGYWVPLP--PYRIGD 181 (446) T ss_pred cc---------ccccc----eeeeccCC--------------------cccc-c-cccchhhcccccccCcc--cchhhh Confidence 00 00000 12111100 0000 0 00000011111111100 00000 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEecc---CCC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDS---APP 307 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g---~~~ 307 (527) +............+ |.. -.|+++..+.++.++|.|-|-.+--..---|..+-+...-++..|.|+.+..- ... T Consensus 182 ~~~~~~~~g~~~~i--P~~--kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~~ 257 (446) T protein:vir:98 182 PPKKVDVVGSHVRL--PSH--KRLFINYNTKGNNPWGTSCLTSVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNTG 257 (446) T ss_pred hhhhcccCcccccc--ccc--ceEEEEecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCCc Confidence 00000001111112 221 12444445677889999988887777777788999999999999999876533 222 Q ss_pred cCC---CCc---------cc--ceec-CCCeeE----ecCCCCceEEeccccCh-HHHHHHHHHHHHHHHHhhcCchhhc Q lcl|Aclame:pro 308 RDS---RGN---------MV--PWTI-SPLGMV----EHGQNNKIYRVNGVASL-EPSQTHMNKAEEAMQQTKGIPDIAV 367 (527) Q Consensus 308 ~d~---~G~---------~~--p~~v-~pg~~~----el~~~~k~~~ld~~~~l-a~~~~~~d~L~~~l~~vs~tP~va~ 367 (527) .+. ++. .. -..+ ..++++ .+|++..+..+....+. ..|...+++..++|+.+.--.-.-+ T Consensus 258 ~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl 337 (446) T protein:vir:98 258 VVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLLV 337 (446) T ss_pred ccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhcccccc Confidence 111 111 10 0011 122222 23778888888754443 3589999999999998765555555 Q ss_pred ccccccccccHHHHH-HHhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcccccccceeE---EEEeCCCCCC Q lcl|Aclame:pro 368 GVVDAAVAESGIALD-LKLSAILSSCAEQELELKSVLKQF-FYNLVTQWLPAYEGVGIDDADKKLTV---TITFRDPKPV 442 (527) Q Consensus 368 G~~d~s~a~SG~ALq-l~~~PLlakv~~krl~~~~~~~q~-~~~li~~~L~~~e~v~~~~~~~~~~v---~v~w~d~lP~ 442 (527) |..+.+. +..||- ....-....++. .++.+... ++++|..++ .+-+.....+..+ .+.|...-|. T Consensus 338 ~~~~~~~--GS~ala~vh~~V~~d~~~a----Da~~i~~tln~~Li~~l~----~lNf~~~~~~~~~~~~~~~~~~~e~e 407 (446) T protein:vir:98 338 QNRETTF--GTGRASEIQLELFDGKINS----IFDTVIHAFTEQVIGNLI----RLNFDPALYPLASNTGYITRLPGRAT 407 (446) T ss_pred ccccccc--chhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH----HhCCCccccccccccccceeccCChh Confidence 5333221 222321 221111111111 11112222 223443332 2223222222211 2345555688 Q ss_pred CHHHHHHHHHHHHhcCCccH--HHHHHHHHHhcCCCCchHHH Q lcl|Aclame:pro 443 NNEKRFAQLLELWEAGLIPA--KKLTEELSKIMGFELTEEDF 482 (527) Q Consensus 443 D~~~~i~~~v~l~~aGlls~--~ta~~~L~~~g~~~~~e~~~ 482 (527) |.++.++.+.+|+..|++-. +..+++. .|.+...++. T Consensus 408 Dl~~~a~~~~~L~~~G~~~p~~~~~ire~---~giP~~~~~~ 446 (446) T protein:vir:98 408 DLAALVEAIKQMHDMGFLVDGDKDHIRSI---TGLPDAISST 446 (446) T ss_pred hHHHHHHHHHHHHhCCccccccHHHHHHH---hCcCCCCCCC Confidence 99999999999999998532 2233322 2333222222 No 172 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=97.30 E-value=0.0001 Score=42.51 Aligned_cols=374 Identities=11% Similarity=0.033 Sum_probs=165.7 Q ss_pred CCC-ChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQ-DKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~-~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |++ +++--....+...+..-+ +.+ .+.-+.....|.........-.|.-...|+.+++ T Consensus 1 Mglf~~~~~~~~~~~~~~~~~~-~~~--------------------~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~ 59 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQDSFF-DIT--------------------DPEFLDALNGSEWVSAETALKNSDLFSIISQLSN 59 (384) T ss_pred CccccccccCcccccccchhhc-ccc--------------------chhhcccccCCceechhhhhccHHHHHHHHHHHH Confidence 776 332222222211111100 000 0000000000110001111111111223333333 Q ss_pred hhccCccccccCcchhHHHHHHHHHHhcC---chhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEe Q lcl|Aclame:pro 80 FLGQGLKWEFSKKDAKVDDAIRVLFDREN---WEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYE 156 (527) Q Consensus 80 ~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~---l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~ 156 (527) -++ +.+..+..... ...++. .|. ...-........++.|.|+..+.+|. .|+-+.+..++|..+=+.. T Consensus 60 ~ia-~l~~~~~~~~~--~~l~~~---PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~---~g~~~~L~~l~~~~v~v~~ 130 (384) T protein:vir:49 60 DLA-TAKITTSRKQL--QGIVDN---PSNNANRFNFYQSIFAQMLLGGEAFAYRWRNE---NGRDMKWEYLRPSQVSFNR 130 (384) T ss_pred HHh-hCceeeecchh--hhhhhc---cCCCCCHHHHHHHHHHHhhhcCCeEEEEEECC---CCcEEEEEEEcCceeEEEE Confidence 331 12333322111 111110 010 11223345566777899988888875 2345567777777765544 Q ss_pred cCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeec Q lcl|Aclame:pro 157 DPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLS 236 (527) Q Consensus 157 d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~ 236 (527) +++... +.+++++ .+ +. +....+ + T Consensus 131 ~~~~~~----------------------~~y~~~~----~~-~~----~~~~~~------------------------~- 154 (384) T protein:vir:49 131 LDNQNG----------------------LYYNITF----DD-PR----IPPKQH------------------------V- 154 (384) T ss_pred cCCCce----------------------EEEEEEe----cC-cc----ccceeE------------------------e- Confidence 433211 1111111 00 00 000000 0 Q ss_pred cCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe--ccCCCcCCCCc- Q lcl|Aclame:pro 237 TLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT--DSAPPRDSRGN- 313 (527) Q Consensus 237 ~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~--~g~~~~d~~G~- 313 (527) + -+ =|+|+++..+++...|.|-|.-+...++..+....-......-.+.|-..+ .+....+..-+ T Consensus 155 --------~--~~--eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~ 222 (384) T protein:vir:49 155 --------P--QG--DILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKTKQ 222 (384) T ss_pred --------c--Cc--cEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHH Confidence 0 00 178999876777788998776666555544333333333334456674433 33222111000 Q ss_pred c---cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHH Q lcl|Aclame:pro 314 M---VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILS 390 (527) Q Consensus 314 ~---~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLla 390 (527) . .--..+.|.++-++++-+|..+...+.-..+.+..+.+.+.|+..-++|+.-+|......+ ++-.++-.+.-.+. T Consensus 223 ~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~-~~~~~~~~~~~~i~ 301 (384) T protein:vir:49 223 SRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQS-SLEMIYNIYFKAVS 301 (384) T ss_pred HHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc-cHHHHHHHHHHHHH Confidence 0 0011345777778889999999988888888999999999999999999999995432221 22222211111110 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHH Q lcl|Aclame:pro 391 SCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELS 470 (527) Q Consensus 391 kv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~ 470 (527) ..+..|+..++..+..... +...+..-.+......++..|..+|+.++.++..+|. T Consensus 302 ------------------~~l~pi~~~i~~~l~~~l~------~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~ 357 (384) T protein:vir:49 302 ------------------RFLRPFVSELSKKLSCEVD------ADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQ 357 (384) T ss_pred ------------------HHHHHHHHHHHHHhchhhh------hhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHh Confidence 0111111111111111100 0000111112234455677789999999999999988 Q ss_pred HhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 471 KIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 471 ~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) ..|. .| .|+++.. -..|. .||..+++= T Consensus 358 ~~g~--~~-ne~r~~~------------~~~p~------~gGd~~~~~ 384 (384) T protein:vir:49 358 QAEI--LP-KDLPEGE------------TDSTL------KGGETNEQY 384 (384) T ss_pred hCCC--CC-hhHHHHc------------CCCCC------CCCCCCCCC Confidence 8764 23 4444431 11221 233333333 No 173 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=97.28 E-value=0.00011 Score=42.37 Aligned_cols=367 Identities=11% Similarity=0.027 Sum_probs=165.5 Q ss_pred CCCChhhhhhhhHHhhcccC------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEAN------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) |++=.+ +.+... ...+.+... .+.....+. +..+. .|- .. ...-. ..| T Consensus 3 m~~f~~--------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~--~v~-~~-----~al~~----~~v 56 (392) T protein:vir:39 3 LPILNF--------INQTNDPPEVGSVQSYFPDGN-----DAQIMESLL-GDNNE--WVS-AR-----AALRN----SDL 56 (392) T ss_pred chhhhh--------hhcccccccccccccccccCc-----hhhhhhhhc-CCCCc--eec-hH-----Hhhcc----HHH Confidence 665221 111111 001111100 011111111 11110 010 00 00101 123 Q ss_pred HhhhhhhccCcc-ccccCcchhHHHHHHHHHHhcC--c--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 75 EAKMRFLGQGLK-WEFSKKDAKVDDAIRVLFDREN--W--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 75 ~~~~~~Lg~~~~-~~i~~~~~~v~~~lr~w~~~e~--l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) -++++++.-... -.+.+.....+..++ +-| | ..-........++.|.|+..+..|. + |+-+.+..++| T Consensus 57 ~~~i~~ia~~ia~lp~~~~~~~~~~l~~----~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~--g~~~~L~~l~~ 129 (392) T protein:vir:39 57 FSIILQLSSDLAIVKINAEKKKNQGIID----NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-N--GADMKWEYLRP 129 (392) T ss_pred HHHHHHHHHhhccCceeeccchhhhHhh----cCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECC-C--CcEEEEEEEcC Confidence 333333321110 111222222111221 111 1 1223344556777899988888774 2 34457777777 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEP 229 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~ 229 (527) ..+=+..++++.. +.++.++ .+ +. +....+ T Consensus 130 ~~v~~~~~~~~~~----------------------~~y~~~~----~~-~~----~~~~~~------------------- 159 (392) T protein:vir:39 130 SQVNTYYFEYENG----------------------MYYNITF----DD-PK----IEPILQ------------------- 159 (392) T ss_pred ceeEEEEcCCCce----------------------EEEEEEe----cC-cc----cceeEE------------------- Confidence 7765554443211 1111111 00 00 000000 Q ss_pred cceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE--eccCCC Q lcl|Aclame:pro 230 DDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA--TDSAPP 307 (527) Q Consensus 230 ~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~--~~g~~~ 307 (527) + + .=-|+|+++..+++...|.|-|+-+...++..+....-......-.+.|-.. +.+... T Consensus 160 -----~-----------~--~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~ 221 (392) T protein:vir:39 160 -----A-----------P--QSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL 221 (392) T ss_pred -----E-----------c--cccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC Confidence 0 0 0117899987777778899988776666655444433333333335566433 333221 Q ss_pred cCCC--Cccc-ce--ecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH-- Q lcl|Aclame:pro 308 RDSR--GNMV-PW--TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA-- 380 (527) Q Consensus 308 ~d~~--G~~~-p~--~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A-- 380 (527) .+.. =+.. -+ ....|.++-++++-+|..+...++...+.+..+...+.|+..=++|++-+|... ...|... T Consensus 222 ~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~--~~~~~~~~~ 299 (392) T protein:vir:39 222 LSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG--DQQSSIQQI 299 (392) T ss_pred chHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CcccHHHHH Confidence 1110 0000 00 123466666888899999998777788889999999999999999999999432 2223211 Q ss_pred ---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 381 ---LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 381 ---Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) ++-.+.|++. .+++.+.. .++. .+.+ ......-.|..+..+.+.+|..+ T Consensus 300 ~~f~~~~l~P~~~-----------~ie~~l~~---~L~~---~~~~-----------d~~~~~~~d~~~~~~~~~~l~~~ 351 (392) T protein:vir:39 300 SGMYASALNRYLR-----------PAISELEY---KLSD---HISV-----------NMRPAIDPLGDNYLSTISTATRW 351 (392) T ss_pred HHHHHHHHHHHHH-----------HHHHHHHH---hccc---cccc-----------cchhhhccCHHHHHHHHHHHHhC Confidence 1111111111 12121111 1111 1111 11111223566777888999999 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCC Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQP 526 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~ 526 (527) |+++..++.++|.+.|+ .+ .++++. +-..| -.+.++.+|.| T Consensus 352 g~~t~nE~r~~l~~~g~-~p--~e~r~~------------e~l~~-------------~~~Gd~~~p~p 392 (392) T protein:vir:39 352 GALAENQATFVLQEAGY-IP--KDLPAP------------ENTNK-------------KTTGQSNEPVP 392 (392) T ss_pred CCcCHHHHHHHHHhcCC-Cc--cccchh------------cCCCC-------------CCCCCCCCCCC Confidence 99999999999888775 22 333221 00111 11113456666 No 174 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=97.28 E-value=0.00011 Score=42.37 Aligned_cols=367 Identities=11% Similarity=0.027 Sum_probs=165.5 Q ss_pred CCCChhhhhhhhHHhhcccC------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEAN------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) |++=.+ +.+... ...+.+... .+.....+. +..+. .|- .. ...-. ..| T Consensus 3 m~~f~~--------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~--~v~-~~-----~al~~----~~v 56 (392) T protein:vir:10 3 LPILNF--------INQTNDPPEVGSVQSYFPDGN-----DAQIMESLL-GDNNE--WVS-AR-----AALRN----SDL 56 (392) T ss_pred chhhhh--------hhcccccccccccccccccCc-----hhhhhhhhc-CCCCc--eec-hH-----Hhhcc----HHH Confidence 665221 111111 001111100 011111111 11110 010 00 00101 123 Q ss_pred HhhhhhhccCcc-ccccCcchhHHHHHHHHHHhcC--c--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 75 EAKMRFLGQGLK-WEFSKKDAKVDDAIRVLFDREN--W--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 75 ~~~~~~Lg~~~~-~~i~~~~~~v~~~lr~w~~~e~--l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) -++++++.-... -.+.+.....+..++ +-| | ..-........++.|.|+..+..|. + |+-+.+..++| T Consensus 57 ~~~i~~ia~~ia~lp~~~~~~~~~~l~~----~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~--g~~~~L~~l~~ 129 (392) T protein:vir:10 57 FSIILQLSSDLAIVKINAEKKKNQGIID----NPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNA-N--GADMKWEYLRP 129 (392) T ss_pred HHHHHHHHHhhccCceeeccchhhhHhh----cCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECC-C--CcEEEEEEEcC Confidence 333333321110 111222222111221 111 1 1223344556777899988888774 2 34457777777 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEP 229 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~ 229 (527) ..+=+..++++.. +.++.++ .+ +. +....+ T Consensus 130 ~~v~~~~~~~~~~----------------------~~y~~~~----~~-~~----~~~~~~------------------- 159 (392) T protein:vir:10 130 SQVNTYYFEYENG----------------------MYYNITF----DD-PK----IEPILQ------------------- 159 (392) T ss_pred ceeEEEEcCCCce----------------------EEEEEEe----cC-cc----cceeEE------------------- Confidence 7765554443211 1111111 00 00 000000 Q ss_pred cceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE--eccCCC Q lcl|Aclame:pro 230 DDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA--TDSAPP 307 (527) Q Consensus 230 ~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~--~~g~~~ 307 (527) + + .=-|+|+++..+++...|.|-|+-+...++..+....-......-.+.|-.. +.+... T Consensus 160 -----~-----------~--~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~ 221 (392) T protein:vir:10 160 -----A-----------P--QSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL 221 (392) T ss_pred -----E-----------c--cccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC Confidence 0 0 0117899987777778899988776666655444433333333335566433 333221 Q ss_pred cCCC--Cccc-ce--ecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH-- Q lcl|Aclame:pro 308 RDSR--GNMV-PW--TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA-- 380 (527) Q Consensus 308 ~d~~--G~~~-p~--~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A-- 380 (527) .+.. =+.. -+ ....|.++-++++-+|..+...++...+.+..+...+.|+..=++|++-+|... ...|... T Consensus 222 ~~~~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~--~~~~~~~~~ 299 (392) T protein:vir:10 222 LSDKDKASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG--DQQSSIQQI 299 (392) T ss_pred chHHHHHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CcccHHHHH Confidence 1110 0000 00 123466666888899999998777788889999999999999999999999432 2223211 Q ss_pred ---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 381 ---LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 381 ---Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) ++-.+.|++. .+++.+.. .++. .+.+ ......-.|..+..+.+.+|..+ T Consensus 300 ~~f~~~~l~P~~~-----------~ie~~l~~---~L~~---~~~~-----------d~~~~~~~d~~~~~~~~~~l~~~ 351 (392) T protein:vir:10 300 SGMYASALNRYLR-----------PAISELEY---KLSD---HISV-----------NMRPAIDPLGDNYLSTISTATRW 351 (392) T ss_pred HHHHHHHHHHHHH-----------HHHHHHHH---hccc---cccc-----------cchhhhccCHHHHHHHHHHHHhC Confidence 1111111111 12121111 1111 1111 11111223566777888999999 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCC Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQP 526 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~ 526 (527) |+++..++.++|.+.|+ .+ .++++. +-..| -.+.++.+|.| T Consensus 352 g~~t~nE~r~~l~~~g~-~p--~e~r~~------------e~l~~-------------~~~Gd~~~p~p 392 (392) T protein:vir:10 352 GALAENQATFVLQEAGY-IP--KDLPAP------------ENTNK-------------KTTGQSNEPVP 392 (392) T ss_pred CCcCHHHHHHHHHhcCC-Cc--cccchh------------cCCCC-------------CCCCCCCCCCC Confidence 99999999999888775 22 333221 00111 11113456666 No 175 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=97.21 E-value=0.00013 Score=41.89 Aligned_cols=402 Identities=13% Similarity=0.065 Sum_probs=172.4 Q ss_pred HHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhh-eEe----eecCCcccccccccCCchhHHHHhhhhhhccC--- Q lcl|Aclame:pro 13 QLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSD-YQV----ILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQG--- 84 (527) Q Consensus 13 ~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~-~~~----i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~--- 84 (527) -+|+++-. -.-|..-+.+- -..+.|-+++.. ..+ -+.++..... ..|-++++++.-. T Consensus 1 ~~~~~~~~--~~~p~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------~~V~acV~~IA~~iA~ 65 (518) T protein:vir:78 1 MLLANGQT--LSAPAMAELSP----QMQDSYYYAPAVGMQLERQFSLYGGIYKNQ---------PWVRTVIAKRAQALAR 65 (518) T ss_pred CcccCcee--eccchhhhhhh----hhhhcccccceeceecccccchhhHHhhhh---------HHHHHHHHHHHHhhcc Confidence 33443333 11122111111 122222222111 000 1111111111 1333333333211 Q ss_pred ccccc---cCcc--hhHHHHHHHHHHhcCch----hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEE Q lcl|Aclame:pro 85 LKWEF---SKKD--AKVDDAIRVLFDRENWE----QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPY 155 (527) Q Consensus 85 ~~~~i---~~~~--~~v~~~lr~w~~~e~l~----~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~ 155 (527) .+..+ +..+ +.....+..+..+-|-. .-........++.|.++..|..|. + |+-+.+..++|..+-+. T Consensus 66 lp~~l~~~~~~~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~-~--G~~~~L~~l~p~~Vtv~ 142 (518) T protein:vir:78 66 LPVKCMFTSGDTETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNK-S--GTPEKLMPMHPSRVAIK 142 (518) T ss_pred CceEEEEEcCCccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-C--CcEEEEEEECCCceEEE Confidence 12221 1111 11122333344443322 223445556667899988888764 2 33345677788777665 Q ss_pred ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeee Q lcl|Aclame:pro 156 EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKL 235 (527) Q Consensus 156 ~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~ 235 (527) .+.+... ..++ +...+ + .+....+ + T Consensus 143 ~~~~~~~--~~y~----~~~~~---------------------~----~~~~~~~---~--------------------- 167 (518) T protein:vir:78 143 RNSRTGR--YEYY----FQAGA---------------------G----VGTQLVS---F--------------------- 167 (518) T ss_pred EcCCCCE--EEEE----EEecC---------------------C----ccceeEE---e--------------------- Confidence 5543211 1111 11000 0 0000000 0 Q ss_pred ccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC-c- Q lcl|Aclame:pro 236 STLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG-N- 313 (527) Q Consensus 236 ~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G-~- 313 (527) |-+ =|+||++..+++.+.|.|-|+-+...+......-.-......-.|.|-.+++.....+++- + T Consensus 168 -----------~~~--eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~~~~ 234 (518) T protein:vir:78 168 -----------ADD--EVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEAQQR 234 (518) T ss_pred -----------cCC--cEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHH Confidence 000 1788887656666678887765554444443332222233333456744443222222210 0 Q ss_pred -cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH------ Q lcl|Aclame:pro 314 -MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA------ 380 (527) Q Consensus 314 -~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A------ 380 (527) ..-|+ -+.|.++-|+.+-+|..+...+.=..+.+..+...+.|+..=++|.+-+|-.+.++- |.+. T Consensus 235 ~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~-sn~e~~~~~f 313 (518) T protein:vir:78 235 LREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATF-SNISAQMRAF 313 (518) T ss_pred HHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCc-hhHHHHHHHH Confidence 01111 124666668889999999976666667888888889999999999999986543321 2111 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) ++-.+.|++. .+++.+ -..++..++ ....+++.....+..|.++.++...+++++|++ T Consensus 314 ~~~tL~P~~~-----------~ie~el---n~~L~~~~~--------~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~l 371 (518) T protein:vir:78 314 YRDTMAIPIA-----------RIQSAM---DKYVGQYWV--------RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVA 371 (518) T ss_pred HHHHHHHHHH-----------HHHHHH---HHhhccccc--------CcceEEeechhhhccCHHHHHHHHHHHHhCCCc Confidence 1112222221 122211 111111111 122355556677889999999999999999999 Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHH-HHHHHHHHhcCccccccc--cc-CCCCcccccccCCCCCC Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELTEEDFRQATEDKK-TQGIAQAEAADPFGAQMA--AE-QGIPDEEDDQALNGQPL 527 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~e~~~~~~~e~~a-~~a~~~~aa~d~~g~~~~--~d-~g~~d~~~~~~~~~~~~ 527 (527) +.-++.+++ |.+|-++.-....-.-. ..-........+.|.... .+ ..-|.++.||+.+.... T Consensus 372 T~NE~R~~~----gl~pie~~~gD~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (518) T protein:vir:78 372 TPNEGREIM----GLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPASVP 438 (518) T ss_pred CHHHHHHHh----CCCCCCCCCCceeeecccceecccccccccCCCCCCCCCCCCcccccccccCccccCC Confidence 999999876 44443221111000000 000000000000000000 00 00011111221111111 No 176 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=97.12 E-value=0.00016 Score=41.37 Aligned_cols=407 Identities=10% Similarity=0.048 Sum_probs=168.8 Q ss_pred CCCChh--hhhhhhHHhhccc-----CCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MGQDKR--QYGSTQQLRAGEA-----NFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~~~~~--qy~~~~~~~~~~~-----~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~ 73 (527) ||=.+. -.+-...|+.... .-.++.+.....+- ++-..+..-..|- .+++-....++ .. T Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~g~~v~-~~~a~~~~aV~-----~~ 66 (432) T protein:vir:97 1 MPDEKKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARD--------LGIIISDTGAAVN-ADAIMRLDAVA-----AC 66 (432) T ss_pred CCCcccCchhhhhHhhcCCccccccccccccccCchhhhh--------hcccccccCcccc-hHhhhcchHHH-----HH Confidence 322111 0111122222110 00011222111111 1111111111110 11111111111 12 Q ss_pred HHhhhhhhccCccccc---cCcc-hh-HHH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceE Q lcl|Aclame:pro 74 IEAKMRFLGQGLKWEF---SKKD-AK-VDD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLS 143 (527) Q Consensus 74 v~~~~~~Lg~~~~~~i---~~~~-~~-v~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~ 143 (527) |+-+++-++ ..+..+ +..+ .+ .+. ..+-+-.+-| +. .-........++.|.++..+.++. |+-+. T Consensus 67 v~~Ia~~ia-~lp~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~----g~~~~ 141 (432) T protein:vir:97 67 VKLVSQAVA-AMPLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD----GRIES 141 (432) T ss_pred HHHHHHhhc-cCceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC----CcEEE Confidence 222222221 112221 1111 11 111 1222222222 11 223445556777899977888763 33346 Q ss_pred EEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRP 223 (527) Q Consensus 144 i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~ 223 (527) +..++|..+-+..+.++. + .+.|.. .+|.. .+ T Consensus 142 L~~l~p~~v~v~~~~~g~--~-----~y~~~~---------------------~~g~~-------~~------------- 173 (432) T protein:vir:97 142 LQYLANDRLTITTDTKGN--T-----AYRYRR---------------------TDGQM-------ID------------- 173 (432) T ss_pred EEEEcCcceEEEEcCCCc--E-----EEEEEe---------------------cCceE-------EE------------- Confidence 677888777666544321 0 100110 01100 00 Q ss_pred cccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCceE Q lcl|Aclame:pro 224 ESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLGFY 300 (527) Q Consensus 224 ~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P~~ 300 (527) + +-+ =|+|+++.+. +...|.|-|+-+. .+|+..+.-......+ .+.|-. T Consensus 174 -----------~-----------~~~--~iih~r~~~~-dg~~G~spi~~~~---~~i~~~~a~~~~~~~~f~ng~~~~g 225 (432) T protein:vir:97 174 -----------I-----------PRQ--QIWKIMGYSL-DGENGLSAIRYGA---QIFGTAIAAEAQAARAFRNGQLQSV 225 (432) T ss_pred -----------E-----------ccc--cEEEecCcCC-CCcccccHHHHHH---HHHHHHHHHHHHHHHHHhccCCcce Confidence 0 000 1678887644 3466777665444 3443333333333333 345533 Q ss_pred EeccCCCcCCCC--cc-ccee--cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 301 ATDSAPPRDSRG--NM-VPWT--ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 301 ~~~g~~~~d~~G--~~-~p~~--v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) +++-....+++- +. .-+. ...|.+.-|+++-+|..++..+.-..+.+..+...+.|+..=++|.+-+|-.+.++. T Consensus 226 il~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~ 305 (432) T protein:vir:97 226 YYQIDRFLTDDQYDSFSKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTT 305 (432) T ss_pred eEecCCCCCHHHHHHHHHHHhhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccc Confidence 332211122110 00 0011 234666668899999999987777778888888999999999999999996654322 Q ss_pred ccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 376 ESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 376 ~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) ..|..++-+....+..+-.- +...+++.+ -..++ .......+.+++.+...+-.|.++.++...+++ T Consensus 306 ~~~s~~e~~~~~f~~~tl~P---~~~~ie~~l---n~kLl-------~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~ 372 (432) T protein:vir:97 306 SWGSGIESQQLGFLTMTLSP---WLRRIEQSI---ALNLL-------TPAERRRYFADFDTSALLRADSAARSSYYSQLV 372 (432) T ss_pred ccchhHHHHHHHHHHHHHHH---HHHHHHHHH---hhhcc-------CccccCceEEEeechhhhccCHHHHHHHHHHHH Confidence 11222221111011100000 111122211 11111 111122345667777788889999999999999 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) ++|+++..++.+++ |.+|.+.+......--...-.+.+ +........+..++++...++. T Consensus 373 ~~G~~T~NE~R~~~----glpp~~g~~~~~~~~~~~~pl~~~--~~~~~~~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:97 373 NNGLMTRDEAREIE----GLPKLGGNAAVLTVQSAMVPLDSI--GLQASPEPASGLGNQQQDKVSK 432 (432) T ss_pred hCCCCCHHHHHHHh----CCCCCCCCcceEeecccccchhhh--cccCCCCCCCCCCCcccccccC Confidence 99999999998876 455543321111000000000110 1111111122222222222222 No 177 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=97.11 E-value=0.00017 Score=41.27 Aligned_cols=379 Identities=13% Similarity=0.066 Sum_probs=164.3 Q ss_pred CCCChhhhh-------------------------hhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeec Q lcl|Aclame:pro 1 MGQDKRQYG-------------------------STQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILR 55 (527) Q Consensus 1 m~~~~~qy~-------------------------~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~ 55 (527) |.=.-.+=. ....|+++...---.|+...--|..+..-|-++-.+.-.++-..+ T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~- 79 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGV- 79 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEE- Confidence 322111100 011122211110011222222222222222222222211111100 Q ss_pred CCcccccccccCCchhHHHHhhhhhhccCccccccCcch--hH-HHHH-HHHHHhcC--ch--hhHHHHhHhhhhcccEE Q lcl|Aclame:pro 56 GGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDA--KV-DDAI-RVLFDREN--WE--QKFESLKRWTEIRGDYV 127 (527) Q Consensus 56 g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~--~v-~~~l-r~w~~~e~--l~--~k~~~~~r~a~~~GDav 127 (527) |..+..|. ++ +..| +-+-.+-| +. .-........++.|.|+ T Consensus 80 -------------------------------~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay 128 (434) T protein:vir:43 80 -------------------------------YERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAY 128 (434) T ss_pred -------------------------------EEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeE Confidence 11111111 11 1111 11111111 11 22334445667789998 Q ss_pred EEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccc Q lcl|Aclame:pro 128 LLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAI 207 (527) Q Consensus 128 ~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i 207 (527) ..|.++. |+-+.+..++|+.+=+..+.++. + .|... ..+|.. T Consensus 129 ~~i~~~~----G~~~~L~~l~p~~v~~~~~~~g~--~-------------------------~y~~~-~~~g~~------ 170 (434) T protein:vir:43 129 AEIRRAA----GRPAALDFLLPSRVDLECDENGR--L-------------------------KYFYT-TKKGAR------ 170 (434) T ss_pred EEEEeCC----CcEEEEEEEcCcceEEEEcCCCe--E-------------------------EEEEE-ecCceE------ Confidence 7887762 34456677888777655544311 1 11100 001100 Q ss_pred eeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHH Q lcl|Aclame:pro 208 KYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTD 287 (527) Q Consensus 208 ~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd 287 (527) .+ ++ .-=|+|+++.+. +..+|.|-|+-+...+... +.- T Consensus 171 -~~---------------------------------~~----~~eVih~~~~~~-dg~~G~spi~~~~~~i~~~---~~~ 208 (434) T protein:vir:43 171 -RE---------------------------------IE----RTNMLHIPAFTL-DGRIGLSAIRYGVDVFGSV---MSA 208 (434) T ss_pred -EE---------------------------------Ec----cccEEEecCcCC-CCccccCHHHHHHHHHHHH---HHH Confidence 00 00 123688887643 4577888766555444333 322 Q ss_pred HHHHHHH---hCCceEEeccCCCcCCC--Ccc-ccee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 288 EDLIMVF---GGLGFYATDSAPPRDSR--GNM-VPWT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 288 ~~~i~~~---~g~P~~~~~g~~~~d~~--G~~-~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l 356 (527) ...+..+ .+.|-.+++-....+++ -+. .-++ .+-|.+.-++++-+|..+...++-..+.+..+...+.| T Consensus 209 ~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~I 288 (434) T protein:vir:43 209 EDAANGTFKNGLLPTVAFKVDRILQPAQREEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEI 288 (434) T ss_pred HHHHHHHHhccCCcceEEecCCCCCHHHHHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHH Confidence 2333222 34564444332222211 000 0111 11345555788889999987777777889999999999 Q ss_pred HHhhcCchhhcccccccccccHHHHHH--------HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc Q lcl|Aclame:pro 357 QQTKGIPDIAVGVVDAAVAESGIALDL--------KLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADK 428 (527) Q Consensus 357 ~~vs~tP~va~G~~d~s~a~SG~ALql--------~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~ 428 (527) +..=++|.+-+|-.+.++. .+..++- .+.|++. .+++. +-..++.. .... T Consensus 289 a~~fgVPp~~lg~~~~~~~-~~s~~e~~~~~f~~~~L~P~~~-----------~ie~~---ln~kL~~~-------~~~~ 346 (434) T protein:vir:43 289 CRWFGVPPWMIGQTDKGSN-WGTGLEQQMLAFLTFSISSITN-----------QIQQC---VNKRLLTA-------PERI 346 (434) T ss_pred HHHhCCCHHHhCCCcCCcc-ccchHHHHHHHHHHHHHHHHHH-----------HHHHH---HHhhcCCh-------hhhc Confidence 9999999999996654321 1222221 2333322 12221 11112211 1111 Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccc-ccc Q lcl|Aclame:pro 429 KLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFG-AQM 507 (527) Q Consensus 429 ~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g-~~~ 507 (527) .+.+++.+...+-.|.++.++...+++++|+++.-++.+++ |.+|-+ .-.+..--.-..-.+.+.-.+++. ... T Consensus 347 ~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~----gl~p~~-ggD~~~~~~n~~~~~~~~~~~~~~~~~~ 421 (434) T protein:vir:43 347 RYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKE----NLPELP-GGDILTVQSNLVPIDQLGQSNKSQAVRA 421 (434) T ss_pred CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCC-CCCeEeeccCccchhhhhccCCCcchhh Confidence 24467777788888999999999999999999999999976 444422 111100000000000000001110 001 Q ss_pred --cccCCCCcccc Q lcl|Aclame:pro 508 --AAEQGIPDEED 518 (527) Q Consensus 508 --~~d~g~~d~~~ 518 (527) -+-.|.|+-+. T Consensus 422 ~~~~~~~~~~~~~ 434 (434) T protein:vir:43 422 ALMNWFSQPEPQE 434 (434) T ss_pred hhhccCCCCCCCC Confidence 11123332222 No 178 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=97.08 E-value=0.00018 Score=41.10 Aligned_cols=407 Identities=11% Similarity=0.051 Sum_probs=173.6 Q ss_pred CCCChh--hhhhhhHHhhccc-----CCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MGQDKR--QYGSTQQLRAGEA-----NFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~~~~~--qy~~~~~~~~~~~-----~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~ 73 (527) ||=.+. -.+-...|+.... .-.++.|.....+.. +-..+..-..|- .+.+-....+| .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~s~~g~~v~-~~~al~~~~V~-----~~ 66 (432) T protein:vir:10 1 MPDEKKLGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDL--------GIIISDTGAAVN-ADAIMRLDAVA-----AC 66 (432) T ss_pred CCCCcccchhhhhHhhcCCccccccccccccccCcchhhhh--------cccccccCcccc-hhhhhcchHHH-----HH Confidence 332221 0111122222211 001222222222211 100011111111 11111111122 23 Q ss_pred HHhhhhhhccCccccc---cCcc-hh-HHH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceE Q lcl|Aclame:pro 74 IEAKMRFLGQGLKWEF---SKKD-AK-VDD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLS 143 (527) Q Consensus 74 v~~~~~~Lg~~~~~~i---~~~~-~~-v~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~ 143 (527) |+.+++-++ ..+..+ +..+ .+ .+. ..+-+-.+-| |. .-........++.|.|+..+.++. |+-+. T Consensus 67 i~~Ia~~ia-~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~----g~~~~ 141 (432) T protein:vir:10 67 VKLVSQAIA-AMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD----GRIES 141 (432) T ss_pred HHHHHHhhh-hCceeEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC----CcEEE Confidence 333333221 112222 1111 11 111 1222222222 11 223445566777899987887753 33456 Q ss_pred EEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRP 223 (527) Q Consensus 144 i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~ 223 (527) +..++|..+-+..+.++. + .+.|.. .+|.. .+ + T Consensus 142 L~~l~~~~v~v~~~~~g~--~-----~y~~~~---------------------~~g~~-------~~---~--------- 174 (432) T protein:vir:10 142 LQYLANDRLTITTDTKGN--T-----AYRYRR---------------------TDGQM-------ID---I--------- 174 (432) T ss_pred EEEEcCCceEEEEcCCCc--E-----EEEEEe---------------------cCceE-------EE---E--------- Confidence 677888777766554321 1 111111 11100 00 0 Q ss_pred cccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCceE Q lcl|Aclame:pro 224 ESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLGFY 300 (527) Q Consensus 224 ~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P~~ 300 (527) + .==|+|+++.+. +...|.|-|+- +.++|+..+.-......| .+.|-. T Consensus 175 ---------------------~----~~~iih~~~~~~-dg~~G~spi~~---~~~~i~~~~~~~~~~~~~f~ng~~~~g 225 (432) T protein:vir:10 175 ---------------------P----KQQIWKIMGYSL-DGENGLSAIRY---GAQIFGTAIAAEAQAARAFRNGQLQSV 225 (432) T ss_pred ---------------------c----CccEEEecCCCC-CCcccccHHHH---HHHHHHHHHHHHHHHHHHHhcCCCcce Confidence 0 001578887643 34567665554 444444433333333333 345644 Q ss_pred EeccCCCcCCC--Ccc-ccee--cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 301 ATDSAPPRDSR--GNM-VPWT--ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 301 ~~~g~~~~d~~--G~~-~p~~--v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) +++.....+.+ -+. .-+. ...|.+.-|+++.+|..++..++-..+.+..+...+.|+..-++|.+-+|-.+.++- T Consensus 226 il~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~ 305 (432) T protein:vir:10 226 YYQIDRFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTT 305 (432) T ss_pred EEecCCCCCHHHHHHHHHHHhhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcc Confidence 44322222210 000 0111 234666668889999999987777778888899999999999999999996654322 Q ss_pred ccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 376 ESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 376 ~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) ..|..++-+..-++.-+-.- +...+++.+ -..++ .......+.+++.....+-.|.++.++...++. T Consensus 306 ~~~sn~e~~~~~f~~~tl~P---~~~~ie~~l---n~kL~-------~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~ 372 (432) T protein:vir:10 306 SWGSGIESQQLGFLSMTLSP---WLRRIEQSI---ALNLL-------SPAERRRYFADFDTSALLRADSAARSSYYSQLV 372 (432) T ss_pred cccchHHHHHHHHHHHHHHH---HHHHHHHHH---Hhhhc-------CccccCceEEEeechhhhccCHHHHHHHHHHHH Confidence 22222221111000000000 111122211 11111 111112344666666778889999999999999 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) ++|+++.-++.++| |.+|-+.+..-...--...-.+. ++........+..++++...++. T Consensus 373 ~~G~~T~NE~R~~~----glppi~g~~~~~~~~~~~~pl~~--~~~~~~~~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 373 NNGLMTRDEAREIE----GLPKLGGNAAVLTVQSAMVPLDS--IGLQASPEPASGLGNQQQDKVSK 432 (432) T ss_pred hCCCCCHHHHHHHh----CCCCCCCCcceEeecCcccchhh--hcccCCCCCCCCCCCcccccccC Confidence 99999999999977 55554433211100000000011 11111111122223333333333 No 179 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=97.07 E-value=0.00019 Score=41.04 Aligned_cols=388 Identities=11% Similarity=0.021 Sum_probs=168.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHH--HHHHHHHHhcCChhheEeeecCCccccccc-ccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLA--SYRLYEDMYLTNTSDYQVILRGGDEGDQRP-IYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~--aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~-~~~p~~~k~v~~~ 77 (527) |.+..|+= =..|++ ..+.....-.+....+.... +.+-....+ -++ -...|-++ T Consensus 1 m~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~a~--~~~~v~~~ 57 (412) T protein:vir:26 1 MNVIAKEN--------------------IVTRIKKKLIDNWIDQSTSKLYDFSPWK-NRSFWGVINNTLE--TNETIFSA 57 (412) T ss_pred Cccchhhh--------------------hhhhhhhhHhhhhhcccccccccccccC-Cccccccchhhhh--ccHHHHHH Confidence 66554411 011111 00000000000000000000 000000000 000 00122333 Q ss_pred hhhhccC---ccccccCcchhHHHHH-HHHHHhcC--ch-hh-HHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 78 MRFLGQG---LKWEFSKKDAKVDDAI-RVLFDREN--WE-QK-FESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 78 ~~~Lg~~---~~~~i~~~~~~v~~~l-r~w~~~e~--l~-~k-~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) +.++.-. .+..+-...+.+...+ .-+-.+-| +. .. ........++.|.|+..+..|. .|+-+.+..++| T Consensus 58 i~~ia~~iA~lp~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~---~G~~~~L~~l~~ 134 (412) T protein:vir:26 58 ITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI---YHQPSKLFLLNP 134 (412) T ss_pred HHHHHHhHhhCceeEeeccccccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECC---CCcEEEEEEEcC Confidence 3333211 1222211111221111 11222223 22 22 2456667778899988777764 233446677788 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEP 229 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~ 229 (527) ..+-+..+++.. ...++ +.. ..|.. .+ + T Consensus 135 ~~v~v~~~~~~~--~~~y~----~~~---------------------~~g~~-------~~---~--------------- 162 (412) T protein:vir:26 135 DVVEMLIENQSR--ELYYS----IHA---------------------ATGNK-------LI---V--------------- 162 (412) T ss_pred ceeEEEEeCCCc--EEEEE----EEc---------------------CCceE-------EE---E--------------- Confidence 877766554421 01110 111 00100 00 0 Q ss_pred cceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc-eEEe-ccCCC Q lcl|Aclame:pro 230 DDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG-FYAT-DSAPP 307 (527) Q Consensus 230 ~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P-~~~~-~g~~~ 307 (527) + .==|+||++..+.+...|.|-|+-+...++-.+.. ... .....+.+ -..+ .+... T Consensus 163 ---------------~----~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~-~~~--~~~~~~~~~~~i~~~~~~l 220 (412) T protein:vir:26 163 ---------------H----NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV-RTF--NLTEMQKPDSFMLKYGSNV 220 (412) T ss_pred ---------------c----cccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHH-HHH--HHHhcCCCCceEEecCCCC Confidence 0 00168998876678888999876655544433222 222 23333333 2222 22221 Q ss_pred cCCCCc--ccce---ecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH-- Q lcl|Aclame:pro 308 RDSRGN--MVPW---TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA-- 380 (527) Q Consensus 308 ~d~~G~--~~p~---~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A-- 380 (527) .++.-+ ...| .-+.|.+.-++++-++..++..+.-..+.+..+...+.|+..=++|..-+|....+.- |.+. T Consensus 221 ~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~-sn~e~~ 299 (412) T protein:vir:26 221 GKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNF-AKNEEL 299 (412) T ss_pred CHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc-ccHHHH Confidence 111000 0111 1345667778888899999877777778888888899999999999999985433221 1111 Q ss_pred ----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 381 ----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWE 456 (527) Q Consensus 381 ----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~ 456 (527) ++-.+.|++. ++-..+-..+|...+. .....+++.+...+-.|.++.++...++.. T Consensus 300 ~~~f~~~~l~P~~~--------------~ie~~ln~kLl~~~~~------~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~ 359 (412) T protein:vir:26 300 NRFYLQHTLLPIVK--------------QYEEEFNRKLLTKTDR------EKNRYFKFNVKSYLRADSATQAEVYFKAVR 359 (412) T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHhhcCCcccc------cCcceEEeechhhhccCHHHHHHHHHHHHh Confidence 1222333222 1111122222222111 112234555667788899999999999999 Q ss_pred cCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCC Q lcl|Aclame:pro 457 AGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALN 523 (527) Q Consensus 457 aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~ 523 (527) +|+++.-++.++| |.+|-+. -.+. .-. ..- ...|+.........|.++.+ .++ T Consensus 360 ~G~~t~NE~R~~~----gl~p~~g-gD~~---~~~--~n~-~~~~~~~~~~~~~~gG~~n~---~e~ 412 (412) T protein:vir:26 360 SGYYTINDIREWE----DLPPVEG-GDKP---LIS--GDL-YPIDTPLELRKSLKGGDKNV---NES 412 (412) T ss_pred CCCcCHHHHHHHh----CCCCCCC-cCee---eec--ccc-cccccchhhcccccCCCCCc---CCC Confidence 9999999999987 4444322 1111 000 000 00111111111111221111 111 No 180 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=97.05 E-value=0.00019 Score=40.97 Aligned_cols=421 Identities=13% Similarity=0.091 Sum_probs=160.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCC-ChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAV-TDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v-~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |-..+|. ......|..+-..++ |+-|- ..|...|..++. .+..|+.++. T Consensus 59 ~~~~~r~---g~~~~~~~~g~~~~~epp~d~------~~l~~l~~~np~---------------------V~~aI~iia~ 108 (648) T protein:vir:79 59 MSLVKRI---GLAIMDGGGGGRDFEEPEFDF------NEITSAYNTEGY---------------------VRQAVDKYIE 108 (648) T ss_pred hHHHHHh---HHHHHhhcCCccccccCCcCH------HHHHHHHhcChH---------------------HHHHHHHHHH Confidence 3333332 011111111111112 22221 112222322211 1223333222 Q ss_pred hhccCccccccCc--chhHHHHHHHHHHhcC----chhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEE Q lcl|Aclame:pro 80 FLGQGLKWEFSKK--DAKVDDAIRVLFDREN----WEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYF 153 (527) Q Consensus 80 ~Lg~~~~~~i~~~--~~~v~~~lr~w~~~e~----l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~f 153 (527) -+ -++++.+... ++.-...++....+.| ...-+.+.....++.|.|+..+..|........+ +.++.. T Consensus 109 ~i-a~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYveiiRd~~G~~~~~l--~~~~~~--- 182 (648) T protein:vir:79 109 MM-FKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKSRAKDALPFQGM--NVMGVG--- 182 (648) T ss_pred HH-hhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCCCccchhh--hhhhhc--- Confidence 11 1112322221 1111112222222332 2234555666677889998888877533211111 011110 Q ss_pred EEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccccee Q lcl|Aclame:pro 154 PYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIK 233 (527) Q Consensus 154 p~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~ 233 (527) ....+.+. |+.+- .++.. .++++|.+. .|. + .. T Consensus 183 ------~~~~v~~l-----~pl~p--~~v~v---------~~d~~g~~~-----~Y~---y-----~~------------ 215 (648) T protein:vir:79 183 ------DSMPVAGY-----FPLNL--ASMKV---------KRDKFGMIK-----GWQ---Q-----EQ------------ 215 (648) T ss_pred ------cccceeee-----EeecC--ceeEE---------EEcCCCcee-----eeE---E-----Ee------------ Confidence 00011111 22111 00000 000111000 000 0 00 Q ss_pred eeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC---cCC Q lcl|Aclame:pro 234 KLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP---RDS 310 (527) Q Consensus 234 ~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~---~d~ 310 (527) ..+...-.++ .=-|+||+...+.+..+|.|-|.-+...+...+..-........-.+.|-.+++-..+ .+. T Consensus 216 --~g~~~~~~~~----~~dIIHik~~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~ 289 (648) T protein:vir:79 216 --EGQDKPQKFK----PEDIVHIYYKREKGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGA 289 (648) T ss_pred --cCCceeEEec----CccEEEEccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHH Confidence 0000000000 1138899966567788899988776666655544444444444445666544431111 110 Q ss_pred C--------CcccceecCCCee-EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHH Q lcl|Aclame:pro 311 R--------GNMVPWTISPLGM-VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIAL 381 (527) Q Consensus 311 ~--------G~~~p~~v~pg~~-~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~AL 381 (527) . +......+..|.+ ++ .-.+.... .++-..+.+..+...+.|...=++|++-+|-.+.++-..+.+. T Consensus 290 ~k~~~e~~~~~~~~~~i~gg~v~~~---~~~i~~~~-s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~stae~~ 365 (648) T protein:vir:79 290 EEGEVDLVRGEVENMDVEGGMVTTE---RVNISSIA-SNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTGDNL 365 (648) T ss_pred HHHHHHHHHHhcccccccccccccc---eeeccccC-CHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHHHHH Confidence 0 0000011222221 11 11111111 1222346777788889999999999999995554432122222 Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 382 DLKLSAILSSCAEQELELKSVLKQF-FYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 382 ql~~~PLlakv~~krl~~~~~~~q~-~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) ...|. ..+...+-.+..-++.. ++.++. +............+++.|.+.+..|..+.++..++++++|++ T Consensus 366 ~~~~~---~~i~~l~~~i~~~le~~~~~~ll~------e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~Gil 436 (648) T protein:vir:79 366 SSDFK---DRIKALQKVMATFINEFMVKEILM------EGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAI 436 (648) T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHhh------hhhccccccccceEEEeecccchhhHHHHHHHHHHHHhCCCc Confidence 22221 11111110111111111 111110 111111111223478889999999999999989999999999 Q ss_pred cHHHHHHHHHHhcCCCCchHHH-H----HHHHHHHHHHHHHH-HhcCccccc-ccccCCCC-----cccccccC--CCCC Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELTEEDF-R----QATEDKKTQGIAQA-EAADPFGAQ-MAAEQGIP-----DEEDDQAL--NGQP 526 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~e~~~-~----~~~e~~a~~a~~~~-aa~d~~g~~-~~~d~g~~-----d~~~~~~~--~~~~ 526 (527) |..++.+++ |.+|-++-. . ...-..+..+.... +..++.+.+ .++.+|.. +..++.+. .++| T Consensus 437 T~NEaR~~l----GlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e~~~~~~~~~~~g~~~~~ 512 (648) T protein:vir:79 437 SEDEMRELI----GRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKKKKATDNKTKPTNQHGTKTSP 512 (648) T ss_pred CHHHHHHHh----CCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCccccccccccCCCCCCCCCCCcCCCC Confidence 999999876 555532211 1 00000000000111 111221111 12222222 22222222 3444 Q ss_pred C Q lcl|Aclame:pro 527 L 527 (527) Q Consensus 527 ~ 527 (527) . T Consensus 513 ~ 513 (648) T protein:vir:79 513 K 513 (648) T ss_pred c Confidence 4 No 181 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=97.04 E-value=0.0002 Score=40.92 Aligned_cols=404 Identities=12% Similarity=0.078 Sum_probs=171.6 Q ss_pred CCCChhhh-hhhh-HHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQY-GSTQ-QLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy-~~~~-~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |-.-+.+- .... .++ ++-+.+-..++.. ....+..+....-..|- ...+-....+| ..|+.++ T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~--------~~~~~~~~~~~~g~~v~-~~~al~~~~v~-----~ci~~Ia 65 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFL-KWLGVPISLTDGS--------FWSAWGGMGSSSGETVT-ADSALQLSAVW-----SCVRLIA 65 (437) T ss_pred CCcchhhhhhhhHHhhh-hhcCCcccCCchh--------HHHhhcccccCCCceec-hHhhhccHHHH-----HHHHHHH Confidence 43211111 1111 111 1111111111110 01112111111100010 01110001111 1222222 Q ss_pred hhhccCccccc---cCcchh---HHH-HHHHHHHhcC--c--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 79 RFLGQGLKWEF---SKKDAK---VDD-AIRVLFDREN--W--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 79 ~~Lg~~~~~~i---~~~~~~---v~~-~lr~w~~~e~--l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) +-++ ..+..+ +..+.+ ... .++-+..+=| + ..-........++.|.|+..|..|. + +-+.+..+ T Consensus 66 ~~ia-~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~--g--~~~~L~~l 140 (437) T protein:vir:10 66 ETIA-TLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA--G--VLIGLELM 140 (437) T ss_pred HHHh-hCceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC--C--cEEEEEEE Confidence 2111 112211 111111 011 1111211111 1 1223445566778899988888772 2 33456777 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|..+-+..+.++. +. +.|..+ +|.. .+ T Consensus 141 ~p~~v~i~~~~~g~--~~-----y~~~~~---------------------~g~~-------~~----------------- 168 (437) T protein:vir:10 141 LPQRTTVKRLTSGA--LQ-----YTYRNV---------------------DGTV-------ST----------------- 168 (437) T ss_pred cCcceEEEECCCCe--EE-----EEEEec---------------------CceE-------EE----------------- Confidence 88776665543311 00 001111 0100 00 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) ++ .==|+||++.. .+.++|.|-|+-+...+.-.+....-......-.+.|-.+++.... T Consensus 169 ----------------~~----~~dIih~r~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ 227 (437) T protein:vir:10 169 ----------------LA----EDDVFHVRGFS-LDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQI 227 (437) T ss_pred ----------------Ec----cccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCC Confidence 00 00168888764 3568899877655555443333322222222334557444332222 Q ss_pred cCC-CCc--cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccc-ccc Q lcl|Aclame:pro 308 RDS-RGN--MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAV-AES 377 (527) Q Consensus 308 ~d~-~G~--~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~-a~S 377 (527) .++ .-+ ...|. -+.|.++-++.+-+|..++..++-..+.+..+...+.|+.+=++|.+-+|-.+.++ .-| T Consensus 228 l~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~s 307 (437) T protein:vir:10 228 LQKEKRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGT 307 (437) T ss_pred CCHHHHHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccc Confidence 221 000 01111 11355666888889999998887788889999999999999999999999654321 112 Q ss_pred HHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHH Q lcl|Aclame:pro 378 GIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQL 451 (527) Q Consensus 378 G~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~ 451 (527) .+. ++-.+.|++. .+++. +-..+|.. .......+++.+...+..|.++.++.. T Consensus 308 n~e~~~~~f~~~tl~P~~~-----------~ie~~---l~~kll~~-------~e~~~~~~~fd~~~ll~~d~~~r~~~~ 366 (437) T protein:vir:10 308 GIEQQTLGFLTFTLRPWLT-----------RIEQA---ARRSLLRP-------GERDQFYAEFSVEGLLRADSAGRAAFY 366 (437) T ss_pred hHHHHHHHHHHHHHHHHHH-----------HHHHH---HHhhccCc-------cccCceEEEEechhhhccCHHHHHHHH Confidence 111 2222333322 11111 11112211 111223466777788999999999999 Q ss_pred HHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-HhcCcccccc---cccCCCCcccccccCC Q lcl|Aclame:pro 452 LELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQA-EAADPFGAQM---AAEQGIPDEEDDQALN 523 (527) Q Consensus 452 v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~-aa~d~~g~~~---~~d~g~~d~~~~~~~~ 523 (527) .+++.+|+++.-++.++| |.+|-+....-..-.-...-.+.+ +-..+.+... .+|.+.++...|+. - T Consensus 367 ~~~~~~G~~T~NE~R~~~----gl~pi~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~ 437 (437) T protein:vir:10 367 STMTQNGLMTRDECRAKE----NLPPMGGNAAVLTVQSALLPIDKLGEHTTATAAQDALKAWLYQEEKTRATQE-R 437 (437) T ss_pred HHHHhCCCcCHHHHHHHh----CCCCCCCCcceEeecCcccchhhccCcCCCcchhccccccCCCCCCCCcccc-C Confidence 999999999999999977 455533221110000000000111 0011112221 22223233222222 2 No 182 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=97.02 E-value=0.00021 Score=40.77 Aligned_cols=387 Identities=12% Similarity=0.078 Sum_probs=170.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC--hhheEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN--TSDYQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~--~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |.+=.+- +.+... .+...+..+.+++... +..-..| -.+++-....+| +|-.+|-..+ T Consensus 1 Mg~f~~l-------f~r~~~----------~~~~~~~~~~~~~~~~~~~~~g~~v-~~~~al~~~~v~--~~i~~Ia~~i 60 (414) T protein:vir:44 1 MVFFSGL-------FQRKSD----------APVTTPAELADAIGLSYDTYTGKQI-SSQRAMRLTAVF--SCVRVLAESV 60 (414) T ss_pred Cchhhhh-------hccCcc----------CcccchhhHhHhhccCccccCCcee-chhhhhccHHHH--HHHHHHHHHh Confidence 6654321 111111 0111111222222211 1111111 011111111111 1222222222 Q ss_pred hhhccCccccccCcchh------HHHHHHHHHHhcC--c--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 79 RFLGQGLKWEFSKKDAK------VDDAIRVLFDREN--W--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 79 ~~Lg~~~~~~i~~~~~~------v~~~lr~w~~~e~--l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) +-|-+.. |..+..+.+ +...|. .+-| + ..-........++.|.|+..+..+ . |+-+.+..++ T Consensus 61 a~~p~~~-~~~~~~~~~~~~~~~~~~lL~---~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~--~--g~~~~L~~l~ 132 (414) T protein:vir:44 61 GMLPCNL-YHLNGSLKQRATGERLHKLIS---THPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA--F--GEVAELLPVD 132 (414) T ss_pred ccCceEE-EEecCCceeecccchHHHHHH---hhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC--C--CcEEEEEEEc Confidence 2111100 111111111 122221 1111 1 123345556677789998777654 2 3344677788 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |..+-+..+++.. + + +.+..+ +|. . T Consensus 133 ~~~v~~~~~~~~~--~--~---y~~~~~---------------------~g~------~--------------------- 157 (414) T protein:vir:44 133 PGCVVPKLNSSWE--P--V---YQVTFP---------------------DGS------T--------------------- 157 (414) T ss_pred CceEEEEECCCCc--E--E---EEEEec---------------------Cce------E--------------------- Confidence 8877665544311 1 0 000010 010 0 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) +.+ + .==|+||++.. .+.++|.|-++-+...++-.+....-......-.+.|-..+...... T Consensus 158 ----~~~---------~----~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l 219 (414) T protein:vir:44 158 ----DVL---------S----QEDIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTL 219 (414) T ss_pred ----EEE---------c----cccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC Confidence 000 0 01268888763 35578999877666555544332222222222245564333322222 Q ss_pred CCCC--c-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 309 DSRG--N-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 309 d~~G--~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) +++. + ..-|. -+.|.+.-++.+-++..++..+.-..+.+..+...+.|+.+-++|.+-+|..+.++- |.+ T Consensus 220 ~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~-~n~ 298 (414) T protein:vir:44 220 SDQAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATF-NNI 298 (414) T ss_pred CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCc-ccH Confidence 2110 0 01111 123556668888899999876666668888888899999999999999985543322 111 Q ss_pred -H-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 380 -A-----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLE 453 (527) Q Consensus 380 -A-----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~ 453 (527) . ++-.+.|++. .+++. +-..+++. .....+.+++.+...+-.|.++.++...+ T Consensus 299 e~~~~~~~~~~l~P~~~-----------~ie~~---ln~~L~~~-------~~~~~~~i~fd~~~ll~~d~~~~~~~~~~ 357 (414) T protein:vir:44 299 EELGLGFINYSLVPYLT-----------RIEQR---INTGLVRK-------SKQGVFYAKFNAGALLRGDMKSRFEAYAT 357 (414) T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHH---HHhhcCCc-------cccCceEEEEechhhhccCHHHHHHHHHH Confidence 0 1112222211 11111 11111211 11123456777778888899999999999 Q ss_pred HHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 454 LWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 454 l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +.++|+++..++.+++ |.+|-+. -.+. -.-... .....+.......+|++..|+++- T Consensus 358 ~~~~G~~t~NE~R~~~----gl~p~~g-gD~~-~~~~n~---~~~~~~~~~~~~~~~~~~~d~~~~ 414 (414) T protein:vir:44 358 GINWGIYSPNDCRDLE----DMNPRPG-GDVY-LTPMNM---TTKPSDGSKAGKQKDNANADETTS 414 (414) T ss_pred HHhCCCcCHHHHHHHh----CCCCCCC-ccee-cccccc---cccCCccccCCCCCCCCCCCCCCC Confidence 9999999999999876 4444321 1111 000000 000112222222233444443333 No 183 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=96.90 E-value=0.00027 Score=40.17 Aligned_cols=313 Identities=11% Similarity=0.005 Sum_probs=136.0 Q ss_pred EEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeec-cCccccccc Q lcl|Aclame:pro 167 VYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLS-TLTEEEPLP 245 (527) Q Consensus 167 vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~-~~~~e~~l~ 245 (527) ||.. .|.-.+ . ...-.+++|+-. ..+ ..|. ++++.. ...++... .+.+...|| T Consensus 1 v~Ei-vw~~~~-g---~~~~~~l~~r~~----------~~~----~~f~---~~~~~~----l~~~~~~~~~g~~~~~lp 54 (355) T protein:vir:78 1 MFEQ-VYRIEN-G---RARLGKLAWRPP----------RTI----SRFD---VAPDGG----LVAIEQWGVFGKATVRIP 54 (355) T ss_pred CeEE-EEEeeC-C---eEEEeeeeecCc----------cce----eeee---eccCCc----eeEEEecCCCCCCcceec Confidence 5433 355322 1 111123333210 000 0111 121110 00111111 122222333 Q ss_pred ccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCC---CcCCCC---cc--cc- Q lcl|Aclame:pro 246 EQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAP---PRDSRG---NM--VP- 316 (527) Q Consensus 246 ~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~---~~d~~G---~~--~p- 316 (527) |-.||-..| .+..+.++|.+-|..+.-..---+..+.+....++..|.||....+.. ..+.+- +. .. T Consensus 55 -~~kfi~~~~---~~~~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~ 130 (355) T protein:vir:78 55 -VDRLVVFVN---EREGANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQ 130 (355) T ss_pred -cCCEEEEEe---CCCCCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHH Confidence 334544433 346688999999999888777778899999999999977765543322 111110 00 00 Q ss_pred ----------eecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccccc---ccHHHHH- Q lcl|Aclame:pro 317 ----------WTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA---ESGIALD- 382 (527) Q Consensus 317 ----------~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a---~SG~ALq- 382 (527) +..+.-...=++++.++..+....+...+.+.+++..++|+.+- +|.+-.+.+ -+..||- T Consensus 131 ~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~i------LGqtlTs~~~~~gGS~Alg~ 204 (355) T protein:vir:78 131 KEEGLQLAKEFRAGEAAGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAV------LAHFLTLGGDKSTGSYALGD 204 (355) T ss_pred HHHHHHHHHHhhCCcceeEeecCCceEEEeecCCCcccHHHHHHHHHHHHHHHH------hhhhhccccCCccchhhHHH Confidence 01121133347888899999877677778889999888887643 443322211 1223433 Q ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccH Q lcl|Aclame:pro 383 LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPA 462 (527) Q Consensus 383 l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~ 462 (527) ....-....++.=...+...+ +++++..++ .+-+. .....+.++|.. .+.+..+.++.+.+|...|++.. T Consensus 205 vh~~v~~~~~~aD~~~i~~~l---n~~li~~l~----~lN~~--~~~~~P~~~~~~-~~~~~~~~a~~~~~l~~~G~~~~ 274 (355) T protein:vir:78 205 TFASFFTGSLNAVMKHIADVT---QQHVVEDLV----DQNWG--PEEPAPRLVPAQ-LGKEQPVTAEAIRALVECGAFTA 274 (355) T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HhcCC--CCCCCCEEEecC-cChhHHHHHHHHHHHHhCCCccc Confidence 222212222222211222222 223333332 11121 222235677865 45566777889999999999765 Q ss_pred HHHH-HHHHHhcCCCCchHHHHHHHHHHHHHHH-HHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 463 KKLT-EELSKIMGFELTEEDFRQATEDKKTQGI-AQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 463 ~ta~-~~L~~~g~~~~~e~~~~~~~e~~a~~a~-~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) ...+ .-+.+..|.+.+.+..+....-...... ..+++.+..... ++......+.+++--.+|+ T Consensus 275 ~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~a~~~~~~~~~ 339 (355) T protein:vir:78 275 DPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQRQG--AALPSRSPRADPPRRRGPL 339 (355) T ss_pred cHHHHHHHHHHhCCCCCCCCCcccCCccccccccccccccCCcccc--ccccccCCCCCChhhhHHH Confidence 3322 2233334555444332221100000000 000111110000 0111111111112222232 No 184 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=96.85 E-value=0.0003 Score=39.93 Aligned_cols=375 Identities=12% Similarity=0.087 Sum_probs=163.4 Q ss_pred CC---CChh--h--------------------------hhh-----hhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 1 MG---QDKR--Q--------------------------YGS-----TQQLRAGEANFPNAVTDFDKARLASYRLYEDMYL 44 (527) Q Consensus 1 m~---~~~~--q--------------------------y~~-----~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~ 44 (527) |+ +-++ + +.+ ...|+.+...-...|+...--|..+..-|-++=. T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 44 2111 1 100 1112222111111111111112222222222222 Q ss_pred CChhheEeee-cCCcccccccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhc-Cch--hhHHHHhHhh Q lcl|Aclame:pro 45 TNTSDYQVIL-RGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRE-NWE--QKFESLKRWT 120 (527) Q Consensus 45 ~~~~~~~~i~-~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e-~l~--~k~~~~~r~a 120 (527) +....+-..+ |.++ ..++.++.. +...|+. .-| .|. .-........ T Consensus 81 ~~iA~lp~~v~~~~~----------~~~~~~~~~------------------~~~lL~~--~PN~~~t~~~f~~~l~~~l 130 (431) T protein:vir:10 81 GTIGMLPMNLISSDD----------SKQVLTDDP------------------AHRLLKY--KPNDWQTPMEFKSLMQLRA 130 (431) T ss_pred HhhccCceEEEEecC----------ceeeeccch------------------HHHHHhh--ccCCCCCHHHHHHHHHHHH Confidence 2211111100 0000 000111111 1112211 001 111 1223455677 Q ss_pred hhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCcc Q lcl|Aclame:pro 121 EIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGK 200 (527) Q Consensus 121 ~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~ 200 (527) ++.|.|+..|.+|. |+-+.+..++|..+-+..+.++. + .+.|..++ |. T Consensus 131 ll~Gna~~~i~r~~----g~~~~L~pl~~~~v~~~~~~~~~--~-----~y~~~~~~---------------------g~ 178 (431) T protein:vir:10 131 LLDGESMARIVWSG----NRPIRLIPMDRGSAKGRLTSTWQ--I-----VYDYTTPT---------------------GD 178 (431) T ss_pred hhcCCeEEEEEEcC----CceEEEEEEcCceeEEEEcCCCe--E-----EEEEEeCC---------------------ce Confidence 78899999999883 34566777888887776554311 1 11122111 10 Q ss_pred ccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHH Q lcl|Aclame:pro 201 PVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIAS 280 (527) Q Consensus 201 p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~de 280 (527) . .+ ++ .==|+||++.. .+..+|.|-|+-+. .+ T Consensus 179 ~-------~~---------------------------------~~----~~dViHir~~~-~dg~~G~spi~~~~---~~ 210 (431) T protein:vir:10 179 K-------IE---------------------------------LP----AREVFHLRDLS-IDGVSGVSRVKLSG---NA 210 (431) T ss_pred E-------EE---------------------------------Ec----hhhEEEecCcC-CCCcccccHHHHHH---HH Confidence 0 00 00 00157888764 34577887665544 44 Q ss_pred HHhhHHHHHHHHHH---hCCceEEeccCCCcCCC-Cc--cccee------cCCCeeEecCCCCceEEeccccChHHHHHH Q lcl|Aclame:pro 281 VNQTMTDEDLIMVF---GGLGFYATDSAPPRDSR-GN--MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTH 348 (527) Q Consensus 281 Ln~~lsd~~~i~~~---~g~P~~~~~g~~~~d~~-G~--~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~ 348 (527) |+-.+.-...+..+ .+.|-.+++-....++. -+ ...|. -+.|.+.-++++-+|..++..+.-..+.+. T Consensus 211 i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~ 290 (431) T protein:vir:10 211 LELAEQAERAASRTFRTGVMAGGAIEVPKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIEN 290 (431) T ss_pred HHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHH Confidence 44333334444433 45564433222222211 00 01111 123555668888899999987777778888 Q ss_pred HHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccc Q lcl|Aclame:pro 349 MNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADK 428 (527) Q Consensus 349 ~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~ 428 (527) .+...+.|+..=++|.+-+|..+.+.. |. ++-+...++..+-.- +...+++.+ -..+|+. .... T Consensus 291 r~~~~~~Ia~~fgVPp~~lg~~~~~t~-sn--~eq~~~~f~~~tL~P---~~~~ie~~l---n~~Ll~~-------~~~~ 354 (431) T protein:vir:10 291 RNHQIEEVARMYGVPRPLLMMDDTSWG-SG--IEQLAIFFIQYGLSH---WFVSWEQAA---ARAFLPE-------KMLG 354 (431) T ss_pred HHHhHHHHHHHhCCCHHHhCCCCCCcc-cc--HHHHHHHHHHHHHHH---HHHHHHHHH---HhhccCh-------hhcC Confidence 888889999999999999996553322 21 221111111110000 111121211 1111211 1111 Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 429 KLTVTITFRDPKPVNNEKRFAQLLELWEAGL----IPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFG 504 (527) Q Consensus 429 ~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGl----ls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g 504 (527) .+.+++.+...+-.|.++.++...+++.+|+ ++.-++.+++ |.+|-++...... .-|.. T Consensus 355 ~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~NE~R~~~----gl~p~~~~~gD~~-------------~~p~n 417 (431) T protein:vir:10 355 QRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVREML----DLPRADDPVADQL-------------RNPMT 417 (431) T ss_pred CceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHHHHHHHh----CCCCCCCccccce-------------ecccc Confidence 2346667778888899999999888987776 8999999876 4454333111111 11222 Q ss_pred ccccccCCCCcccc Q lcl|Aclame:pro 505 AQMAAEQGIPDEED 518 (527) Q Consensus 505 ~~~~~d~g~~d~~~ 518 (527) ....+++-.|=.+. T Consensus 418 ~~~~~~~~~~p~~~ 431 (431) T protein:vir:10 418 QKQKGSGDEPPATT 431 (431) T ss_pred cccCCCCCCCCCCC Confidence 11111111111111 No 185 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=96.83 E-value=0.00031 Score=39.79 Aligned_cols=387 Identities=11% Similarity=0.091 Sum_probs=174.8 Q ss_pred CCCChhhhhhhh----------HHhhcccCCC-CCCChHHHHHHHHHHHHHHHhcCChhheEeee--cCCcccccccccC Q lcl|Aclame:pro 1 MGQDKRQYGSTQ----------QLRAGEANFP-NAVTDFDKARLASYRLYEDMYLTNTSDYQVIL--RGGDEGDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy~~~~----------~~~~~~~~~~-~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~--~g~d~~~~~~~~~ 67 (527) |-+.+.--.... ..+.+..... -.|+...--|+.+..-|-++-.+.-.++...+ +.++. . T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g-~------ 73 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQVVPGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENG-G------ 73 (419) T ss_pred CcchhhhccCCccccccccccccccccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCC-c------ Confidence 544322111100 0000000101 12333333444444444444444433321111 11110 0 Q ss_pred CchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) -.++.+....+| ++. .++.. ..++ .-........++.|.|+..|.++. .|+-+.+..+ T Consensus 74 --~~~~~~~~l~~l-L~~-----~PN~~-----~t~~------~f~~~~~~~l~l~Gna~~~i~r~~---~G~~~~L~pl 131 (419) T protein:vir:57 74 --REIAFDHPLHDL-IRY-----QPNRK-----DTAF------EYHEQTQGVLGLEGNSYSLIDRNG---RGDITELIPI 131 (419) T ss_pred --eeccccchHHHH-Hhh-----ccccC-----CCHH------HHHHHHHHHHhhcCCeEEEEEECC---CCcEEEEEEE Confidence 001111111111 100 01100 0000 111233445667899988888874 3445677778 Q ss_pred ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccc Q lcl|Aclame:pro 148 DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPL 227 (527) Q Consensus 148 dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~ 227 (527) +|..+-+..+++. .+ .|. +...| .+. T Consensus 132 ~~~~v~v~~~~~g--~~-------------------------~y~--~~~~~------~~~------------------- 157 (419) T protein:vir:57 132 NPHKVIVLKGPDG--MP-------------------------YYD--IPSIG------EIL------------------- 157 (419) T ss_pred cCcceEEEECCCc--eE-------------------------EEE--EcCCc------eEE------------------- Confidence 8877766554431 00 010 00000 000 Q ss_pred cccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEec--cC Q lcl|Aclame:pro 228 EPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATD--SA 305 (527) Q Consensus 228 ~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~--g~ 305 (527) |.+ =|+|+++.+. +..+|.|-++-+...++..+..-.-......-.|.|-..++ +. T Consensus 158 -------------------~~~--~vih~r~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ 215 (419) T protein:vir:57 158 -------------------PMR--MVHHIKSFSL-DGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFE 215 (419) T ss_pred -------------------chh--hEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCc Confidence 000 1688887643 45789998887777666554443333333333556643332 11 Q ss_pred CC--cCCC--Cc-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccc Q lcl|Aclame:pro 306 PP--RDSR--GN-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAV 374 (527) Q Consensus 306 ~~--~d~~--G~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~ 374 (527) .. .+.. -+ ..-|. -+-|.+.-++.+-+|..+...+.=..+.+..+...+.|+..=++|..-+|..+.+. T Consensus 216 ~~~~~~~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t 295 (419) T protein:vir:57 216 AKAIASQAAVDAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKST 295 (419) T ss_pred CCcccCHHHHHHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCc Confidence 11 0100 00 00111 11355555788889999987666667888889999999999999999998665433 Q ss_pred cccHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 375 AESGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 375 a~SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i 448 (527) - |++. ++-.+.|++. .+++. +-.++| .......+.+++.+...+-.|.++.+ T Consensus 296 ~-sn~e~~~~~f~~~~l~P~~~-----------~ie~~---l~~~ll-------~~~~~~~~~i~fd~~~ll~~d~~~~~ 353 (419) T protein:vir:57 296 N-NNIEHQGLQYVIYTMLAILK-----------RHESA---MMRDLL-------LPSERRDFYIEFNVSSLLRGDQKSRY 353 (419) T ss_pred c-ccHHHHHHHHHHHHHHHHHH-----------HHHHH---HHhhcc-------CccccCCeEEEEechhhhccCHHHHH Confidence 2 2211 1111222111 11111 111111 11111123466667788888999999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) +...+++++|+++.-++.+++ |.+|-+ .-.+. .-.. ..+.+....+...+.++..+|.+..-..++ T Consensus 354 ~~~~~~~~~G~~T~NE~R~~~----gl~p~~-ggD~~---~~~~--n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (419) T protein:vir:57 354 ESYALGRQWGWLSVNDIRRME----NLTPIP-GGDKY---LTPL--NMVDSKALTGIGKATPQQLKDIEAILCTRN 419 (419) T ss_pred HHHHHHHhCCCcCHHHHHHHh----CCCCCC-CcCee---eecc--ccccccccccccCCCcccCcchhhhhhccC Confidence 999999999999999999876 444422 21111 0000 000000000100122233333333333333 No 186 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=96.82 E-value=0.00032 Score=39.77 Aligned_cols=377 Identities=10% Similarity=0.048 Sum_probs=161.1 Q ss_pred CC---------------CChhhhhhhhHHhhc-ccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccc Q lcl|Aclame:pro 1 MG---------------QDKRQYGSTQQLRAG-EANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRP 64 (527) Q Consensus 1 m~---------------~~~~qy~~~~~~~~~-~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~ 64 (527) |. +..+...+...|... ...+.+ |+.+.--+..+..-|-++=.+.-.++-..+ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~---------- 69 (409) T protein:vir:96 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWG-VINNTLETNETIFSAITKLSNSMASLPLKM---------- 69 (409) T ss_pred CccccchhhhhhHHhhhhhccccccccccccccCccccc-cchhhHhhhHHHHHHHHHHHHhhhhCceEE---------- Confidence 11 001111111111000 001111 222222233333333333322222211111 Q ss_pred ccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCcc Q lcl|Aclame:pro 65 IYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGS 140 (527) Q Consensus 65 ~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~ 140 (527) -......+..+-..|+. +-| |. .-........++.|.|+..|.+|. + |+ T Consensus 70 ---------------------~~~~~~~~~~l~~lL~~---~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~--G~ 122 (409) T protein:vir:96 70 ---------------------YEDYKVVNTEVSDLLTV---SPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-Y--HQ 122 (409) T ss_pred ---------------------eecccccchhHHHHHhh---hcccCCCHHHHHHHHHHHHhhcCceEEEEEECC-C--Cc Confidence 00000011111112211 111 11 112344456677899988888874 2 33 Q ss_pred ceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccc Q lcl|Aclame:pro 141 RLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWD 220 (527) Q Consensus 141 r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd 220 (527) -+.+..++|..+-...+++.. ++.|. .....|.. .+ T Consensus 123 ~~~L~~l~~~~v~v~~~~~~~--------------------------~~~y~-~~~~~g~~-------~~---------- 158 (409) T protein:vir:96 123 PSKLFLLNPDVVEMLIENQSR--------------------------ELYYS-IHAATGNK-------LI---------- 158 (409) T ss_pred EEEEEEEcCceeEEEEeCCCc--------------------------EEEEE-EEcCCceE-------EE---------- Confidence 345566677666554433311 00111 00000100 00 Q ss_pred ccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc-e Q lcl|Aclame:pro 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG-F 299 (527) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P-~ 299 (527) ++ .=-|+||++..+.+...|.|-|+-+...++-.+. ... ......+++ - T Consensus 159 -----------------------~~----~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~-~~~--~~~~~~~~~~~ 208 (409) T protein:vir:96 159 -----------------------VH----NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNA-VRT--FNLTEMQKPDS 208 (409) T ss_pred -----------------------Ec----cccEEEeCCCCCCCccccccHHHHHHHHHHHHHH-HHH--HHHHhcCCCce Confidence 00 1127899876667888899988766555553322 222 122233333 2 Q ss_pred EEe-ccCCCcCCCCc--ccce---ecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccccccc Q lcl|Aclame:pro 300 YAT-DSAPPRDSRGN--MVPW---TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAA 373 (527) Q Consensus 300 ~~~-~g~~~~d~~G~--~~p~---~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s 373 (527) +.+ .+....++.=+ ...| .-+.|.+.-++++-+|..+...++-..+.+..+...+.|+..=++|+.-+|..+.+ T Consensus 209 ~i~~~~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 288 (409) T protein:vir:96 209 FMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNT 288 (409) T ss_pred eEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCC Confidence 222 22211111000 0011 12456677788899999999877666788888888899999999999999855433 Q ss_pred ccccHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 374 VAESGIA-----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 374 ~a~SG~A-----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i 448 (527) .-.+--. ++-.+.|++. .+++ .+-..+|+.++. .....+.+.....+-.|.++.+ T Consensus 289 ~~s~~e~~~~~f~~~~l~P~~~-----------~ie~---~l~~~Ll~~~~~------~~g~~i~fd~~~ll~~d~~~~~ 348 (409) T protein:vir:96 289 NFAKNEELNRFYLQHTLLPIVK-----------QYEE---EFNRKLLTKTDR------EKNRYFKFNVKSYLRADSATQA 348 (409) T ss_pred CcccHHHHHHHHHHHHHHHHHH-----------HHHH---HHHhhcCCcccc------cCcceEEeechhhhccCHHHHH Confidence 2111011 1112222222 1111 112222222111 0112244445566677889999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQ 520 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~ 520 (527) +...+++++|+++.-++.++| |.+|- +.-.+. .-.- . ....|..........|+++.+.+. T Consensus 349 e~~~~~~~~G~~T~NE~R~~~----g~~pi-~ggD~~---~~~~--n-~~~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:96 349 EVYFKAVRSGYYTINDIREWE----DLPPV-EGGDKP---LISG--D-LYPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred HHHHHHHhCCCCCHHHHHHHh----CCCCC-CCccee---eecc--c-ccccccchhhcccccCCCCCcCCC Confidence 999999999999999998876 44443 221111 0000 0 001111111111112222211111 No 187 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=96.72 E-value=0.00039 Score=39.30 Aligned_cols=378 Identities=10% Similarity=0.051 Sum_probs=160.1 Q ss_pred CCCCh--------------hhhhh-hhHHhhcc-cCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccc Q lcl|Aclame:pro 1 MGQDK--------------RQYGS-TQQLRAGE-ANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRP 64 (527) Q Consensus 1 m~~~~--------------~qy~~-~~~~~~~~-~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~ 64 (527) |.=.+ ++-.+ ...|.... ..+.+ |..+.--|..+..-|-++=-+.-..+-..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~---------- 69 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWG-VINNTLETNETIFSAITKLSNSMASLPLKM---------- 69 (409) T ss_pred CCccchhhhhhhhhhhhhhccccccccccccccCccccc-cchhhhhccHHHHHHHHHHHHhhhhCceeE---------- Confidence 21000 00000 00000000 00000 111111122222222222222211111110 Q ss_pred ccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhc-Cch--hhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 65 IYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRE-NWE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 65 ~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e-~l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) -......+..+...|.. ..| .|. .-........++-|.|+..+..|. + |+- T Consensus 70 ---------------------~~~~~~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~--G~~ 123 (409) T protein:vir:93 70 ---------------------YEDYKVVNTEVSDLLTV--SPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-Y--HQP 123 (409) T ss_pred ---------------------eeccccccchHHHHHhh--hcccCCCHHHHHHHHHHHHhhcCceEEEEEECC-C--CcE Confidence 00001111111222211 011 111 122445556667799988888774 2 333 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccc Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~ 221 (527) +.+..++|+.+-+..+++.. ++.|.-. ...|.. .+ T Consensus 124 ~~L~~l~~~~v~~~~~~~~~--------------------------~~~y~~~-~~~g~~-------~~----------- 158 (409) T protein:vir:93 124 SKLFLLNPDVVEMLIENQSR--------------------------ELYYSIH-AATGNK-------LI----------- 158 (409) T ss_pred EEEEEEcCceeEEEEeCCCc--------------------------EEEEEEE-cCCceE-------EE----------- Confidence 45666777766554443311 0111100 000000 00 Q ss_pred cccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc-eE Q lcl|Aclame:pro 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG-FY 300 (527) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P-~~ 300 (527) + + .==|+||++..+.+...|.|-|+-+...++-.+.. ........+.| -. T Consensus 159 -------------~---------~----~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~---~~~~~~~~~~~~~~ 209 (409) T protein:vir:93 159 -------------V---------H----NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV---RTFNLTEMQKPDSF 209 (409) T ss_pred -------------E---------c----cccEEEeCCCCCCCccccccHHHHHHHHHHHHHHH---HHHHHHhcCCCCce Confidence 0 0 00168999876678888999876655555433222 11223333433 22 Q ss_pred EeccCCCcCCCC-c--cccee---cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccc Q lcl|Aclame:pro 301 ATDSAPPRDSRG-N--MVPWT---ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAV 374 (527) Q Consensus 301 ~~~g~~~~d~~G-~--~~p~~---v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~ 374 (527) .+......+++- + ...|+ -+.|.+.-++++-+|..++..+.-..+.+..+...+.|+..-++|++-+|..+.++ T Consensus 210 i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~ 289 (409) T protein:vir:93 210 MLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTN 289 (409) T ss_pred EEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC Confidence 222111122100 0 01111 23566666888889999987776667888888888999999999999999554332 Q ss_pred cccHHH-----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 375 AESGIA-----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFA 449 (527) Q Consensus 375 a~SG~A-----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~ 449 (527) -.+--. ++-.+.|++. .+++. +-..+|+..+. .....+.+.+...+-.|.++.++ T Consensus 290 ~sn~e~~~~~f~~~~l~P~~~-----------~ie~~---l~~~Ll~~~~~------~~~~~~~fd~~~ll~~d~~~~~~ 349 (409) T protein:vir:93 290 FAKNEELNRFYLQHTLLPIVK-----------QYEEE---FNRKLLTKTDR------EKNRYFKFNVKSYLRADSATQAE 349 (409) T ss_pred cccHHHHHHHHHHHHHHHHHH-----------HHHHH---HHhhcCCcccc------cCcceEEeechhhhccCHHHHHH Confidence 211111 1122222222 11111 11112211110 11123455556677778999999 Q ss_pred HHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccc Q lcl|Aclame:pro 450 QLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQ 520 (527) Q Consensus 450 ~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~ 520 (527) ...+++.+|+++.-++.++| |.+|-+. -.+. .-.- . .+..|..........|+++.+... T Consensus 350 ~~~~~~~~G~~T~NE~R~~~----g~~p~~g-gD~~---~~~~--n-~~~~~~~~~~~~~~~gG~~n~~e~ 409 (409) T protein:vir:93 350 VYFKAVRSGYYTINDIREWE----DLPPVEG-GDKP---LISG--D-LYPIDTPLELRKSLKGGDKNVNES 409 (409) T ss_pred HHHHHHhCCCcCHHHHHHHh----CCCCCCC-cCee---eecc--c-ccccccchhhcccccCCCCCcCCC Confidence 99999999999999999987 5444321 1110 0000 0 001111111111112222111111 No 188 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=96.62 E-value=0.00046 Score=38.86 Aligned_cols=454 Identities=9% Similarity=0.016 Sum_probs=215.1 Q ss_pred ChhhhhhhhHHhhcccCCCCCCChHHHHH---HHHHHHHHHHhcCChhheEeeecCCccc-ccccccCCchhHHHHhhhh Q lcl|Aclame:pro 4 DKRQYGSTQQLRAGEANFPNAVTDFDKAR---LASYRLYEDMYLTNTSDYQVILRGGDEG-DQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 4 ~~~qy~~~~~~~~~~~~~~~~v~~~d~~R---l~aY~~~~~~y~~~~~~~~~i~~g~d~~-~~~~~~~p~~~k~v~~~~~ 79 (527) -+..|+.. |. +.+| +.+++.|.+|..-.-.... ..+.... ...+.+.+-|.+.+++.++ T Consensus 1 m~~~~~~l--~~-------------k~~R~~~e~~w~e~a~~~lP~~~~~~--~~~~~~~~~~~~~~dstg~~a~~~LAa 63 (514) T protein:vir:80 1 MRQQASAM--WA-------------EYRDSTAIRKAEDFAKFTIASLMVDP--LDKTHQAEVVEYDFQSAGAFLVNNLTA 63 (514) T ss_pred CccchHHH--HH-------------HhhcchHHHHHHHHHHHhcccccCCC--CCCcccccccccccchhHHHHHHHHHH Confidence 12222222 11 1223 6677888888755311000 0011111 1234467888899999877 Q ss_pred hhccC-----cccc-ccCc----------c---hhHHHH-------HHHHHHhcCchhhHHHHhHhhhhcccEEEEEEec Q lcl|Aclame:pro 80 FLGQG-----LKWE-FSKK----------D---AKVDDA-------IRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGD 133 (527) Q Consensus 80 ~Lg~~-----~~~~-i~~~----------~---~~v~~~-------lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d 133 (527) -|+.+ .+|| ++.. + ++|+++ +..-+.+.|+...+-++=+..++-|-|+.++ + T Consensus 64 ~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~--~ 141 (514) T protein:vir:80 64 KLALTLFPPGRPSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALFYR--E 141 (514) T ss_pred HHHhhhcCCCCcccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEEE--e Confidence 77532 2454 2211 1 123333 3445667899999999999999899998665 4 Q ss_pred CCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecc Q lcl|Aclame:pro 134 DEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEEL 213 (527) Q Consensus 134 ~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~ 213 (527) |.+. ++ +.+.-+.|.-..|.. |+|..|+.-..+. ...- ...+. ....+.... -.+ ...+.. T Consensus 142 ~~~~---~~--~~~pl~~y~v~~d~~--G~v~~i~rr~~~~-~~~l--~~~~~--~~~~~~~~~-~~~--~~~v~v---- 202 (514) T protein:vir:80 142 PGTG---KM--LVWTMQSYTVRRTSH--GDPAVVVLRQQMP-FREL--TPEIQ--ADAQAKQIA-KRD--SDKCDL---- 202 (514) T ss_pred cCCC---cE--EEEEcCeEEEeeCCC--cCeEEEEeeeeec-HHHh--hhhhh--hhhhhhhcc-CCC--CCceEE---- Confidence 5444 33 345455555555554 5666654321111 0000 00000 000000000 001 111111 Q ss_pred cccccccccccccccccceeeeccCccc-ccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 214 YEPGKWDDRPESPLEPDDIKKLSTLTEE-EPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIM 292 (527) Q Consensus 214 ~~~g~wd~~~~~~~~~~~~~~~~~~~~e-~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~ 292 (527) ++-..|++....+... +..-.++.++ ..--.|....|++.++=...++++||+|=.++.++=+..||+.--..-..+ T Consensus 203 ~~~v~~~~~~~~~~~s--v~~e~~g~~i~~es~y~~~e~P~i~~Rw~~~~ge~YGrgp~~~al~D~k~L~~l~~~~l~~~ 280 (514) T protein:vir:80 203 YTVIEWQPTPNGKRCA--VWHELEGKRVGPESSYPAHLCPYVPVAWNVPDGEHYGRGYVEEYSGDFARLSILSERLGLYE 280 (514) T ss_pred EEEEEeecCCCCeEEE--EEEeccceeecccCccccccCCeeeeeeEecCCCCcccchHHHHHHHHHHHHHHHHHHHHHH Confidence 1111122111111110 0101122222 111122234899999988889999999999999999999998877777777 Q ss_pred HHhCCceEEeccCCCcCCCCcccceecCC-CeeEecCCC-CceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccc Q lcl|Aclame:pro 293 VFGGLGFYATDSAPPRDSRGNMVPWTISP-LGMVEHGQN-NKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVV 370 (527) Q Consensus 293 ~~~g~P~~~~~g~~~~d~~G~~~p~~v~p-g~~~el~~~-~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~ 370 (527) .....|++-. .| ++..++..+..++ |.++.-..+ -++.++...+++...++-++.+..+|...= ..+.-+ T Consensus 281 ~~a~~~~~~v---~~-~g~~~~~~l~~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~aF----ml~~~~ 352 (514) T protein:vir:80 281 FEALSLLNLV---DE-AKGGAVDDYRDAETGDFVPGQVGSVASYERGDYNKIAQASASVESIVMRLNRAF----MYTGQV 352 (514) T ss_pred HHhcCCCcee---Cc-ccccchhhhcccCCceeecCCCccceeeecCcccchHHHHHHHHHHHHHHHHHH----hhhccC Confidence 7777765432 11 1222333223222 444332222 234444445578888888888888886531 111111 Q ss_pred -cccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc---ccccce---eEEEEeCCC-CCC Q lcl|Aclame:pro 371 -DAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGID---DADKKL---TVTITFRDP-KPV 442 (527) Q Consensus 371 -d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~---~~~~~~---~v~v~w~d~-lP~ 442 (527) |..+. .|=++. .++++|+..++.++.++..+++.-++.+.-.++.. +...++ -+.+.+-.+ .+. T Consensus 353 rd~~rv---TAtEV~-----~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~il~r~~~g~lP~~p~~l~~~~~vs~la~l 424 (514) T protein:vir:80 353 RDAERV---TVEEIR-----TVAEEAENLLGGVYSLLAETLQAPLAYLTMYEASRGNGGMLLGIAQGVYRPSIITGIPAL 424 (514) T ss_pred CCCCCC---CHHHHH-----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhcceeeecHHHH Confidence 21111 243333 67889999999999998888777555553333221 111111 122222122 222 Q ss_pred CHHHHHHHHH-------HHHhc-----CCccHHHHHHHHHHhcCCCC-----chHHHHHHHHHHHHHHHHHHHh--cCcc Q lcl|Aclame:pro 443 NNEKRFAQLL-------ELWEA-----GLIPAKKLTEELSKIMGFEL-----TEEDFRQATEDKKTQGIAQAEA--ADPF 503 (527) Q Consensus 443 D~~~~i~~~v-------~l~~a-----Glls~~ta~~~L~~~g~~~~-----~e~~~~~~~e~~a~~a~~~~aa--~d~~ 503 (527) .+.+.++.+. .+.+. -.+-.+.+++.+.++.|.+. ++++.+...++.+.++....++ +.+. T Consensus 425 ~r~~~~~~l~~~~~~i~~l~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (514) T protein:vir:80 425 TRNIETANILRATQEASAIVPALVQLSKRFDPEKLVERIFANNSVDLSTLSKDPDVVAAEAEQEAALAQQQLDVASGALA 504 (514) T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3333222221 11111 22557788888877777654 4454444444444333222222 1111 Q ss_pred cccccccCCCCc Q lcl|Aclame:pro 504 GAQMAAEQGIPD 515 (527) Q Consensus 504 g~~~~~d~g~~d 515 (527) +...+| =-|- T Consensus 505 ~~~~~~--~~~~ 514 (514) T protein:vir:80 505 AETSAG--VLTS 514 (514) T ss_pred Hhhhcc--ccCC Confidence 110010 0001 No 189 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=96.42 E-value=0.00064 Score=38.10 Aligned_cols=377 Identities=10% Similarity=0.036 Sum_probs=161.2 Q ss_pred CC---------------CChhhhhhhhHHhhccc-CCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccc Q lcl|Aclame:pro 1 MG---------------QDKRQYGSTQQLRAGEA-NFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRP 64 (527) Q Consensus 1 m~---------------~~~~qy~~~~~~~~~~~-~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~ 64 (527) |. +..+.+.....|..... .+.+ |+.+.--+.-+..-|-++=.+.-.++-..+ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~---------- 69 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWG-VINNTLETNETIFSAITKLSNSMASLPLKM---------- 69 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccccccccccCccccc-cchhhhhccHHHHHHHHHHHHhhhhCceeE---------- Confidence 11 11111111111111000 0001 111112222222222222222211111100 Q ss_pred ccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhc-Cch-hhH-HHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 65 IYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRE-NWE-QKF-ESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 65 ~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e-~l~-~k~-~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) -...+..+..+...|.. ..+ .|. ..| .......++.|.|+..+..|. + |+- T Consensus 70 ---------------------~~~~~~~~~~~~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~--G~~ 123 (409) T protein:vir:94 70 ---------------------YEDYKVVNTEVSDLLTV--SPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-Y--HQP 123 (409) T ss_pred ---------------------eecccccchhHHHHHhh--hcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C--CcE Confidence 00001111112222221 111 111 222 344556677899988887774 2 333 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccc Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~ 221 (527) +.+..++|+.+-+..++++.. + .+ .+..+ .|.. .+. T Consensus 124 ~~L~~l~~~~v~v~~~~~~~~-~-~y----~~~~~---------------------~g~~-------~~~---------- 159 (409) T protein:vir:94 124 SKLFLLNPDVVEMLIENQSRE-L-YY----SIHAA---------------------TGNK-------LIV---------- 159 (409) T ss_pred EEEEEEcCceeEEEEeCCCcE-E-EE----EEEcC---------------------CceE-------EEE---------- Confidence 456667777765554443210 0 00 01110 0000 000 Q ss_pred cccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc-eE Q lcl|Aclame:pro 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG-FY 300 (527) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P-~~ 300 (527) |-+ =|+||++..+.+...|.|-|.-+...++-.+.. ........+.+ -+ T Consensus 160 -------------------------~~~--dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~---~~~~~~~~~~~~~~ 209 (409) T protein:vir:94 160 -------------------------HNM--DMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV---RTFNLTEMQKPDSF 209 (409) T ss_pred -------------------------ccc--cEEEecCCCCCCccccccHHHHHHHHHHHHHHH---HHHHHHhcCCCCee Confidence 000 178998866667888999877665555533322 12223333333 22 Q ss_pred Ee-ccCCCcCCCCc--cccee---cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccc Q lcl|Aclame:pro 301 AT-DSAPPRDSRGN--MVPWT---ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAV 374 (527) Q Consensus 301 ~~-~g~~~~d~~G~--~~p~~---v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~ 374 (527) .+ .+....++.=+ ...|+ -+.|.+.-++++-+|..++..+.-..+.+..+...+.|+..=++|.+-+|..+.++ T Consensus 210 i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~ 289 (409) T protein:vir:94 210 MLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTN 289 (409) T ss_pred EEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCC Confidence 22 22221111000 01111 24566767888889999997777777888888888999999999999999654332 Q ss_pred cccHH---H---HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 375 AESGI---A---LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 375 a~SG~---A---Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i 448 (527) - |.+ . ++-.+.|++. .+++. +-..+|+..+. .....+.+.....+-.|.++.+ T Consensus 290 ~-sn~e~~~~~f~~~~l~P~~~-----------~ie~~---ln~~Ll~~~~~------~~~~~i~fd~~~ll~~d~~~~~ 348 (409) T protein:vir:94 290 F-AKNEELNRFYLQHTLLPIVK-----------QYEEE---FNRKLLTKTDR------EKNRYFKFNVKSYLRADSATQA 348 (409) T ss_pred c-ccHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHhhCCcccc------cCcceEEeechhhhccCHHHHH Confidence 2 111 1 1222233222 11111 11122222111 1112344445566777889999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) +...+++.+|+++.-++.++| |.+|- +.-.+. ...- .- ...|..........|+++... +. T Consensus 349 ~~~~~~~~~G~~T~NE~R~~~----g~~p~-~ggD~~---~~~~--n~-~~~~~~~~~~~~~kGG~~n~~-e~ 409 (409) T protein:vir:94 349 EVYFKAVRSGYYTINDIREWE----DLPPV-EGGDKP---LISG--DL-YPIDTPLELRKSLKGGDKNVN-ES 409 (409) T ss_pred HHHHHHHhCCCcCHHHHHHHh----CCCCC-CCcCeE---eecc--cc-cccccchhhcccccCCCCCcC-CC Confidence 999999999999999998876 44443 221111 0000 00 001111110011112211111 11 No 190 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=96.39 E-value=0.00067 Score=37.99 Aligned_cols=404 Identities=11% Similarity=0.104 Sum_probs=174.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) ++=...+-.+.-+|-.|+..-+.+.+..+..++ +..|..|. |+ +.. -..+++++.++ T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~------iv-------~~~-----i~~~~~~V~~~ 111 (574) T protein:vir:80 55 TTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKT-----LKKFGNNI------IL-------NAI-----INTRSNQVSMY 111 (574) T ss_pred cccccchhhhhccccccccCcCccCCcccHHHH-----HHhhccCh------hH-------HHH-----HHHHHHHHHHH Confidence 222233334444566666665666665554332 33333322 11 000 11233333332 Q ss_pred hc------cCcccccc------Ccc-hh--HHHHHHHHHHhcC---------chhhHHHHhHhhhhcccEEEEEEecCCC Q lcl|Aclame:pro 81 LG------QGLKWEFS------KKD-AK--VDDAIRVLFDREN---------WEQKFESLKRWTEIRGDYVLLLIGDDEK 136 (527) Q Consensus 81 Lg------~~~~~~i~------~~~-~~--v~~~lr~w~~~e~---------l~~k~~~~~r~a~~~GDav~~i~~d~~k 136 (527) .- -++++.+. +.+ .+ ....|..+..+.. +..-+....+..++.|.+++.+.++. + T Consensus 112 ~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~r~~-~ 190 (574) T protein:vir:80 112 CKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKVFDK-D 190 (574) T ss_pred HHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEECC-C Confidence 20 01133321 111 11 1123333332211 11223445566677899988888874 2 Q ss_pred CCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccc Q lcl|Aclame:pro 137 DEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEP 216 (527) Q Consensus 137 ~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~ 216 (527) |+=+.|..+||..+.+..+.+.- + ...+ ..|.... + +.+..+. T Consensus 191 --G~~~~L~pl~p~~V~v~~d~~~~--~----------~~~~----------~~y~~~~-~-------g~~~~~~----- 233 (574) T protein:vir:80 191 --GNFIKFDTVDPTTIFLATNGEGK--L----------IKNG----------ERFVQVI-D-------NRIVAKF----- 233 (574) T ss_pred --CcEEEEEEEcCceeEEEEcCccc--c----------ccCc----------eEEEEEe-C-------CceEEEE----- Confidence 34456788999999998766521 0 0000 0111100 0 1111000 Q ss_pred ccccccccccccccceeeeccCcccccccccccccceEeeCCCCC---CCCccCCccccchHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 217 GKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPI---MNAMFGRSGLAGLESLIASVNQTMTDEDLIMV 293 (527) Q Consensus 217 g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~---~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~ 293 (527) + -+ =|+||+-.+. ....+|.|-|+-+...+........-...... T Consensus 234 ----------------------------~--~~--eiih~~~~~~~~~~~~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ 281 (574) T protein:vir:80 234 ----------------------------N--ER--ELAFAVRNPRADIEVGQYGYPELEIALKQFIAHENTEVFNDRFFS 281 (574) T ss_pred ----------------------------c--cc--cEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 0 00 1566653332 23567888776655555444333222223233 Q ss_pred HhCCce--EEeccCCCcCCCC-c--cccee------cCCCee-EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 294 FGGLGF--YATDSAPPRDSRG-N--MVPWT------ISPLGM-VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKG 361 (527) Q Consensus 294 ~~g~P~--~~~~g~~~~d~~G-~--~~p~~------v~pg~~-~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~ 361 (527) -.+.|- +...+....+.+- + ..-|. -+.|.+ +-++++-+|..+...+.-..+.+..+...+.|+..=+ T Consensus 282 ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afg 361 (574) T protein:vir:80 282 HGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFEKWLNYLINVISALYG 361 (574) T ss_pred ccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhC Confidence 345564 3333332222110 0 00111 123433 4456778999999877777788999999999999999 Q ss_pred Cchhhcccccccc-cccH--------------HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc Q lcl|Aclame:pro 362 IPDIAVGVVDAAV-AESG--------------IALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA 426 (527) Q Consensus 362 tP~va~G~~d~s~-a~SG--------------~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~ 426 (527) +|++-+|-.+.+. .-|| .-++..+.|++. .+++.+.. .++..+ T Consensus 362 VPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~-----------~ie~~ln~---~Ll~~~-------- 419 (574) T protein:vir:80 362 IDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLR-----------FIEDTVNT---YIVAEF-------- 419 (574) T ss_pred CCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHh---hhhhhc-------- Confidence 9999999664321 1111 012223333332 12222211 112111 Q ss_pred ccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHH------------HHHHHHHHH Q lcl|Aclame:pro 427 DKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQA------------TEDKKTQGI 494 (527) Q Consensus 427 ~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~------------~e~~a~~a~ 494 (527) ...+ .+.|...-..+. ....+...+..+|+++.-++.++| |.+|-+. -... .+....... T Consensus 420 ~~~~--~~~f~~~d~~~~-~~~~~~~~~~~~G~lT~NE~R~~l----gl~Pi~g-GD~~~~~~n~~~~~~~~~~~~~~~~ 491 (574) T protein:vir:80 420 GEKY--QFQFRGGDLSAQ-LDKLKIIEQEGKVFRTVNEIRHDK----GLEPIKG-GDVILNGVHIQAIGQALQEEQLEYQ 491 (574) T ss_pred CCce--EEEecccchhhH-HHHHHHHHHHhCCccCHHHHHHHh----CCCCCCC-CCEeeeccceeecccccccccCCcc Confidence 1122 333443333333 333345678889999999999976 4444321 0000 000000000 Q ss_pred HHHHhcC-cccccccccCCCC-----cccccccCCCCCC Q lcl|Aclame:pro 495 AQAEAAD-PFGAQMAAEQGIP-----DEEDDQALNGQPL 527 (527) Q Consensus 495 ~~~aa~d-~~g~~~~~d~g~~-----d~~~~~~~~~~~~ 527 (527) ...+..+ +..+.+..+++.+ +.+.|+.++-+.- T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~ 530 (574) T protein:vir:80 492 RSQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDVSFQDE 530 (574) T ss_pred chhccccccccccCCCCCCCCCCCCCCccccccchhhhh Confidence 0111111 2222222222221 1122222221111 No 191 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=96.37 E-value=0.00042 Score=39.10 Aligned_cols=191 Identities=16% Similarity=0.189 Sum_probs=95.4 Q ss_pred ccCCccccchHHHH-HHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCCcccceecCCCeeEecCCCCceEEeccccChH Q lcl|Aclame:pro 265 MFGRSGLAGLESLI-ASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRGNMVPWTISPLGMVEHGQNNKIYRVNGVASLE 343 (527) Q Consensus 265 ~wG~S~Ledl~~l~-deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la 343 (527) -|..+.|.+++.-- .++.+++.- +....| +. +++.-.+.+-.|.+++. +++ T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~---~~~~~~--~~---------------------~~~~ld~~~e~~e~~~~--~ls 52 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQ---VDNNSG--VG---------------------QAIGIDADSEEYNVLNS--DIG 52 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHH---HHHhhh--hh---------------------hhheeecCCcceeeeec--CcC Confidence 33333333322100 012222211 111111 10 11111233455777775 899 Q ss_pred HHHHHHHHHHHHHHHhhcCch-hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc Q lcl|Aclame:pro 344 PSQTHMNKAEEAMQQTKGIPD-IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVG 422 (527) Q Consensus 344 ~~~~~~d~L~~~l~~vs~tP~-va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~ 422 (527) ++.+-+...+.+|+..|++|. +-||+--.+-..||-.=.-.|--.+...++.+ +.-.++++.+ ++ T Consensus 53 Gl~d~l~~~~~~iaa~s~iP~t~LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~--l~p~le~l~~------------~~ 118 (201) T protein:vir:10 53 GIDTFLSQKFDRIVALSGIHEIILKGKNVGGVSASQNTALETFYGYVDRKRKAE--LLPLLEFLLP------------FI 118 (201) T ss_pred ChHHHHHHHHHHHHhHhcCchhhhcCCCCccccccchhHHHHHHHHHHHHHHHH--HHHHHHHHHH------------hh Confidence 999999999999999999999 66774332322255544444543444333332 2333433221 11 Q ss_pred ccccccceeEEEEeCCCCCCCHHHHH-------HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHH Q lcl|Aclame:pro 423 IDDADKKLTVTITFRDPKPVNNEKRF-------AQLLELWEAGLIPAKKLTEELSKIMGFELTEED-FRQATEDKKTQGI 494 (527) Q Consensus 423 ~~~~~~~~~v~v~w~d~lP~D~~~~i-------~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~-~~~~~e~~a~~a~ 494 (527) ... -..+|.|++...-+.++.+ +...+++++|++|.+++.++|...+..++..++ ++.. + T Consensus 119 ~~~----~~~~~~f~pL~~~s~kekAei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~~~--------~ 186 (201) T protein:vir:10 119 VTE----QEWSVEFNPLSQVSDKDKSEILEKNVNSVAALIAAGIIDADEARDTLRAISTEVKIGEGSIQTE--------V 186 (201) T ss_pred cCC----CCceEeeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCcCCCCCCCCCcc--------c Confidence 111 1256789998887766544 455678889999999999999887654442221 1111 0 Q ss_pred HHHHhcCcccccccccCCCCcccccc Q lcl|Aclame:pro 495 AQAEAADPFGAQMAAEQGIPDEEDDQ 520 (527) Q Consensus 495 ~~~aa~d~~g~~~~~d~g~~d~~~~~ 520 (527) ..+.-.||... |+ |+ T Consensus 187 ~~~e~~dp~~~--------~~---~~ 201 (201) T protein:vir:10 187 VINESEDPLDV--------SA---NN 201 (201) T ss_pred cccccCCCCCC--------CC---CC Confidence 11111233221 11 11 No 192 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=96.31 E-value=0.00076 Score=37.69 Aligned_cols=404 Identities=11% Similarity=0.084 Sum_probs=168.1 Q ss_pred hhHHhhcccCCCCCCChH-HHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhhhccCccccc Q lcl|Aclame:pro 11 TQQLRAGEANFPNAVTDF-DKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEF 89 (527) Q Consensus 11 ~~~~~~~~~~~~~~v~~~-d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i 89 (527) .-.||+........-.+. +..=...+..+.+-|.+....-..| ...++-....+| ..|+.+++-++ ..+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v-~~~~al~~~~V~-----~~v~~Ia~~iA-~lp~~~ 73 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKA-DPEAVLSFHAVF-----ACISLISQDIA-KMRLRL 73 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCccc-ChHHhhccHHHH-----HHHHHHHHhhc-cCceEE Confidence 112221111100000000 0000001111222222211100001 011111111111 12222222221 112221 Q ss_pred ---cCcc--hhH-HHHHHHHHHhcCch----hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCC Q lcl|Aclame:pro 90 ---SKKD--AKV-DDAIRVLFDRENWE----QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPR 159 (527) Q Consensus 90 ---~~~~--~~v-~~~lr~w~~~e~l~----~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d 159 (527) +..+ +++ ...+..+..+-|-. .-........++.|.|+..+.++.. |+-+.+..++|+.+=+..+++ T Consensus 74 ~~~~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~---G~~~~L~~i~~~~v~v~~~~~ 150 (454) T protein:vir:93 74 MQTDAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNAR---GQIKELRILDWNRVEPLVADD 150 (454) T ss_pred EEeccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCC---CcEEEEEEEcCcceEEEEcCC Confidence 1111 111 11222222222211 2233444566778999988888752 344466777777766555443 Q ss_pred CCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCc Q lcl|Aclame:pro 160 YPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLT 239 (527) Q Consensus 160 ~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~ 239 (527) +. +. ++.++. ...| . ... ..+ T Consensus 151 g~--~~---------------------y~~~~~---~~~~------~-~~~----------------------~~~---- 171 (454) T protein:vir:93 151 GE--VF---------------------YRITPD---RNCG------I-TEA----------------------VTV---- 171 (454) T ss_pred Cc--EE---------------------EEEEec---cccc------c-cee----------------------EEe---- Confidence 11 10 110100 0000 0 000 000 Q ss_pred ccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCC-Cc--ccc Q lcl|Aclame:pro 240 EEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSR-GN--MVP 316 (527) Q Consensus 240 ~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~-G~--~~p 316 (527) + .==|+||++....+...|.|-++-+...+...+..-.-......-.+.|-..++-....+++ -+ ..- T Consensus 172 -------~--~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~ 242 (454) T protein:vir:93 172 -------P--AREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLKSN 242 (454) T ss_pred -------c--CcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHHHHHHH Confidence 0 01178998655556777888776655555443332222222223344563333221111210 00 001 Q ss_pred ee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH------HHHHh Q lcl|Aclame:pro 317 WT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA------LDLKL 385 (527) Q Consensus 317 ~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A------Lql~~ 385 (527) |+ ..-|.+.-++.+.+|..+...+.-..+.+..+...+.|+..=++|.+-+|..+.+.- |.+. ++..+ T Consensus 243 ~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~-sn~e~~~~~f~~~~l 321 (454) T protein:vir:93 243 WDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSS-DNVEALEQQYYSQCL 321 (454) T ss_pred HHHHhcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcc-hhHHHHHHHHHHHHH Confidence 11 123556568888899999987777778888888889999999999999996654322 2211 22223 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHH Q lcl|Aclame:pro 386 SAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKL 465 (527) Q Consensus 386 ~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta 465 (527) .|++.. +++.+ ...| +.. ....+++.+...+..|.++.++...+++++|+++.-++ T Consensus 322 ~P~~~~-----------ie~~l----n~~L-------~~~--~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~ 377 (454) T protein:vir:93 322 QTLIES-----------IELLL----DEAL-------ETG--ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEA 377 (454) T ss_pred HHHHHH-----------HHHHH----HHhh-------cCC--CCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHH Confidence 333321 22211 1111 111 12346777788889999999999999999999999999 Q ss_pred HHHHHHhcCCCCchHHHH----H---HHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 466 TEELSKIMGFELTEEDFR----Q---ATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 466 ~~~L~~~g~~~~~e~~~~----~---~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) .++| |.+|-+.-.+ . -++...+. .+--+|....+. ....|+ +...+.++..+ T Consensus 378 R~~~----gl~pi~ggD~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~-~~~~~d~~~~~ 436 (454) T protein:vir:93 378 RKRE----NLPPLAGGDALYLQQQNYSLEALSRR----DAREDPFASSGK-TASVPQ-AVAASDGNKAI 436 (454) T ss_pred HHHh----CCCCCCCCCeeeeccCccchHhhhcc----CcccCCCCCCcc-CCCCCC-CCCCCCCCCCc Confidence 9877 4454332100 0 00000000 000011111000 000000 00111112222 No 193 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=96.04 E-value=0.0011 Score=36.84 Aligned_cols=408 Identities=13% Similarity=0.092 Sum_probs=167.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCC--------------hHHHHHHHHHHHHHHHhcCChhheEe--eecCCccccccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVT--------------DFDKARLASYRLYEDMYLTNTSDYQV--ILRGGDEGDQRP 64 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~--------------~~d~~Rl~aY~~~~~~y~~~~~~~~~--i~~g~d~~~~~~ 64 (527) -|+++|.=......+.--......++ ..-.-+..+..-|-++..++-..+.. ..+.++-. .. T Consensus 78 ~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~--~~ 155 (945) T protein:vir:10 78 VPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKH--VN 155 (945) T ss_pred ccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCc--cc Confidence 45555432211111111000001111 11111112222233333333222211 11111100 00 Q ss_pred ccCCchhHHHH--hhhhhhccCccccccCcchh--HHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCcc Q lcl|Aclame:pro 65 IYVPNGEKLIE--AKMRFLGQGLKWEFSKKDAK--VDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGS 140 (527) Q Consensus 65 ~~~p~~~k~v~--~~~~~Lg~~~~~~i~~~~~~--v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~ 140 (527) .. .+++.+ -+..+| ..|+.. -.+.|..| .....+..++.|.|+..+..|. .|+ T Consensus 156 ~~---~kk~~~~hpL~~LL--------~rPNp~mT~~eFwqsF---------l~~Lv~dLLL~GNAYieIiRd~---~G~ 212 (945) T protein:vir:10 156 YY---LKRIRDARNILEFL--------ERPDPYFSEVNSWEYL---------LGMVLDDILTIDRGAIVKIRDE---QGN 212 (945) T ss_pred cc---ccccccchHHHHHH--------hCCCcccChhHHHHHH---------HHHHHHHHhhcCCeEEEEEECC---CCc Confidence 00 000000 011111 011110 01111111 2245567788899988888763 244 Q ss_pred ceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccc Q lcl|Aclame:pro 141 RLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWD 220 (527) Q Consensus 141 r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd 220 (527) -+.+..+||+++.+..++++.. +.. |.. .. + +....+ +. T Consensus 213 ii~L~pLdPs~Vti~~ddDG~~-~y~------Yv~------------------~i--d------G~~~~~---v~----- 251 (945) T protein:vir:10 213 LVAITPVDGTTIKPILSEDTGI-VVG------YVQ------------------EV--D------GAIVAH---FD----- 251 (945) T ss_pred EEEEEEECCcceEEEEcCCCcE-EEE------EEE------------------ec--C------CceEEE---ec----- Confidence 5568889999988877665321 100 110 00 0 000000 00 Q ss_pred ccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCcc--CCccccchHHHHHHHHhhHHHHHHHHHH---h Q lcl|Aclame:pro 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMF--GRSGLAGLESLIASVNQTMTDEDLIMVF---G 295 (527) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~w--G~S~Ledl~~l~deLn~~lsd~~~i~~~---~ 295 (527) +. + -|+|++|..++..+. |.| .+..+..+|+..+.-......+ . T Consensus 252 ------------------------a~--D--vIlhirn~s~DG~~~GyGlS---PIeaa~~aI~~alAaek~aar~FskN 300 (945) T protein:vir:10 252 ------------------------KR--D--VVLFRQNLTPDVYMYGYSLP---PIEILYKVILSDIFIDKGNLDYYRKG 300 (945) T ss_pred ------------------------CC--c--eEEEeccCCCCcccccCCch---HHHHHHHHHHHHHHHHHHHHHHHHhC Confidence 00 0 145677765554443 544 4455555565544444433332 2 Q ss_pred -CCc--eEEeccCCCcCC--CCccc---------cee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 296 -GLG--FYATDSAPPRDS--RGNMV---------PWT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 296 -g~P--~~~~~g~~~~d~--~G~~~---------p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l 356 (527) +.| ++..++....+. .+... -|. ..-|..+-++++-++..++..+.-..+.+..+...+.| T Consensus 301 Ga~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~eeI 380 (945) T protein:vir:10 301 GSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) T ss_pred CCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHHHHHHH Confidence 356 444444322111 11110 011 11233444788889999998777777889999999999 Q ss_pred HHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEe Q lcl|Aclame:pro 357 QQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITF 436 (527) Q Consensus 357 ~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w 436 (527) +..=++|++-+|-.+.++- |. .+-++.-.+..+-+ .+...+++.+ ...|.. . .......+.| T Consensus 381 ArAFGVPP~lLG~~e~st~-SN--iEqq~~~Fv~~tL~---Pil~~IEqeL----NrkLl~-------~-~eg~~i~fdF 442 (945) T protein:vir:10 381 CAVYQVSPQDVGILEGSNK-AT--AEVMASLTKAKGLE---PLMATISKGF----DEVVSE-------F-RNEKDIKLWF 442 (945) T ss_pred HHHhCCCHHHcccCCCCCc-ch--HHHHHHHHHHHHHH---HHHHHHHHHH----HHhccc-------c-ccCceeEEEe Confidence 9999999999985543221 21 11111111110000 0111122221 111111 0 0112356678 Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH-HHHHH-HH--HHHH-HHHHHHHhcCccccccccc- Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE-DFRQA-TE--DKKT-QGIAQAEAADPFGAQMAAE- 510 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~-~~~~~-~e--~~a~-~a~~~~aa~d~~g~~~~~d- 510 (527) ....-.|.++.++...+++++|+++.-++.+++ |.+|-+. |.--. .. .... .+.....+..+..++..+| T Consensus 443 d~ldl~D~ksraEal~kli~sGiLTiNEvRe~l----GLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dq 518 (945) T protein:vir:10 443 KEDDLEKERDWWNIIQGQLNTGFRSINEARMEK----GLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQ 518 (945) T ss_pred cchhccCHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCC Confidence 777777888899999999999999999999876 4444321 11000 00 0000 0000000111111111111 Q ss_pred ----CCCCcccccccCCCCCC Q lcl|Aclame:pro 511 ----QGIPDEEDDQALNGQPL 527 (527) Q Consensus 511 ----~g~~d~~~~~~~~~~~~ 527 (527) +|..|+.++...++.-- T Consensus 519 p~~kGGe~dEns~~psE~kda 539 (945) T protein:vir:10 519 PSQQGGGVDENSSVPSEQKNA 539 (945) T ss_pred CCCCCCCCCCCCCCCCcccch Confidence 11112222211111111 No 194 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=95.92 E-value=0.0013 Score=36.49 Aligned_cols=383 Identities=12% Similarity=0.098 Sum_probs=173.2 Q ss_pred CCCCh------------hhhhhhhHHhhcccCCCC-CCChHHHHHHHHHHHHHHHhcCChhheEeee--cCCcccccccc Q lcl|Aclame:pro 1 MGQDK------------RQYGSTQQLRAGEANFPN-AVTDFDKARLASYRLYEDMYLTNTSDYQVIL--RGGDEGDQRPI 65 (527) Q Consensus 1 m~~~~------------~qy~~~~~~~~~~~~~~~-~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~--~g~d~~~~~~~ 65 (527) |-+-. .++......+.+...-.+ .|+.+.--|..+..-|-++-.+.-.++-..+ +..+. T Consensus 1 m~~~~~~~~~~~~~s~~~~w~~~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g------ 74 (421) T protein:vir:10 1 MFIPQMFEGKKRSVSGGGFWEAMLGGVRSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDKNG------ 74 (421) T ss_pred CCCcchhcccccccCcchhhHHHhhhhccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCC------ Confidence 32211 111111111111000001 1333333344444444444433322221111 00000 Q ss_pred cCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 66 YVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 66 ~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) .-.++.+....+| +-.+=| +. .-........++.|.|+..+..|. .|+- T Consensus 75 ---~~~~~~~~~l~~l---------------------L~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~---~G~~ 127 (421) T protein:vir:10 75 ---GRQRATDHPIYDL---------------------IHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDG---KGYP 127 (421) T ss_pred ---ceeecccchHHHH---------------------HhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC---CCcE Confidence 0001111111111 111111 11 222344556778899988888774 2344 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccc Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~ 221 (527) +.+..++|..+-+..++++. +.|. . ...| . + T Consensus 128 ~~L~~l~~~~v~v~~~~~g~---------------------------~~y~-~-~~~g------~---~----------- 158 (421) T protein:vir:10 128 KELIPINPKKVIVLKGPDGM---------------------------PYYE-I-PEIG------E---T----------- 158 (421) T ss_pred EEEEEecCceEEEEECCCce---------------------------EEEE-E-cCCC------c---E----------- Confidence 45667777776655443310 0111 0 0000 0 0 Q ss_pred cccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE Q lcl|Aclame:pro 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA 301 (527) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~ 301 (527) + |.+ =|+|+++.. .+...|.|-|+-+...++.....-.-......-.|.|-.+ T Consensus 159 ----------------------~--~~~--eiih~~~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gi 211 (421) T protein:vir:10 159 ----------------------L--PMR--MMHHVKVFS-LDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGV 211 (421) T ss_pred ----------------------E--chh--hEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEE Confidence 0 001 168888764 3457788877655555443322222222222234556433 Q ss_pred ec--cCCC--cCCCC--c-cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcc Q lcl|Aclame:pro 302 TD--SAPP--RDSRG--N-MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVG 368 (527) Q Consensus 302 ~~--g~~~--~d~~G--~-~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G 368 (527) ++ +..+ .+.+- + ..-|+ -+-|.++-++.+-++..+...+.-..+.+..+...+.|+..=++|..-+| T Consensus 212 l~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg 291 (421) T protein:vir:10 212 IERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQ 291 (421) T ss_pred EEecCccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcC Confidence 32 2111 01000 0 00010 12355666888899999998777667888999999999999999999998 Q ss_pred cccccccccHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCC Q lcl|Aclame:pro 369 VVDAAVAESGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPV 442 (527) Q Consensus 369 ~~d~s~a~SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~ 442 (527) ..+.+.- |.+. ++-.+.|++. .+++.+ -..++ .........+++.....+-. T Consensus 292 ~~~~~t~-sn~e~~~~~f~~~tl~P~~~-----------~ie~~l---n~kL~-------~~~~~~~~~v~fd~~~l~~~ 349 (421) T protein:vir:10 292 MLAKATN-NNIEHQGLQFVMYTLLAWLK-----------RHEGAL---QRDLL-------LPSERRDLYIEFNVSGLLRG 349 (421) T ss_pred CCcCCcc-ccHHHHHHHHHHHHHHHHHH-----------HHHHHH---hhhcc-------CccccCCeEEEEechhhhcc Confidence 6554322 2211 1122222222 122211 11111 11111233566777788888 Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 443 NNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 443 D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) |.++.++...+++++|+++.-++.++| |.+|-+ .-.+.. ...- .+-+.++ ......+.....++.|+.. T Consensus 350 d~~~~~~~~~~~~~~G~~T~NE~R~~~----gl~p~~-ggD~~~-~~~n----~~~~~~~-~~~~~~~~~~~~~e~d~~~ 418 (421) T protein:vir:10 350 DQKSRYESYALGRQWGWLSVNDIRRME----NLPPIA-GGDKYL-TPLN----MVDSAQI-IPGDKKPTAQQMAEIDTIL 418 (421) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCC-Ccceee-eccc----ccccccc-ccCCCCcccccCccccccc Confidence 999999999999999999999999976 444432 211110 0000 0001111 1111222333455566666 Q ss_pred CCC Q lcl|Aclame:pro 523 NGQ 525 (527) Q Consensus 523 ~~~ 525 (527) +-+ T Consensus 419 ~~~ 421 (421) T protein:vir:10 419 SRT 421 (421) T ss_pred ccC Confidence 666 No 195 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=95.70 E-value=0.0016 Score=35.92 Aligned_cols=399 Identities=13% Similarity=0.078 Sum_probs=146.8 Q ss_pred CCCChhhhh-------hhhHHhhcccCCCCCCChHHHHHHHH-----------HHHHHHHhcCChhheEeeecCCccccc Q lcl|Aclame:pro 1 MGQDKRQYG-------STQQLRAGEANFPNAVTDFDKARLAS-----------YRLYEDMYLTNTSDYQVILRGGDEGDQ 62 (527) Q Consensus 1 m~~~~~qy~-------~~~~~~~~~~~~~~~v~~~d~~Rl~a-----------Y~~~~~~y~~~~~~~~~i~~g~d~~~~ 62 (527) |+-. -|.+ ....|.+ +.|.|.+.-....|=++ |..|.+.|..+ T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~r--d~l~~~~~glg~~r~~~~~~~g~~~~~~~~~l~~~Yr~~---------------- 61 (449) T protein:vir:10 1 MTDK-LTLAVNHALNDARMARAR--MGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRG---------------- 61 (449) T ss_pred Cchh-hHHHHhhhcchhHHHHHH--HHHHHHHhcCCcccchhhhhcCCcccCCHHHHHHHHhcC---------------- Confidence 3321 0110 0000000 01111111112222233 33444444222 Q ss_pred ccccCCchhHHHHhhhhhhccCccccccCcch----hHHHHH-HHHHH--hcCchhhHHHHhHhhhhcccEEEEEEecCC Q lcl|Aclame:pro 63 RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDA----KVDDAI-RVLFD--RENWEQKFESLKRWTEIRGDYVLLLIGDDE 135 (527) Q Consensus 63 ~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~----~v~~~l-r~w~~--~e~l~~k~~~~~r~a~~~GDav~~i~~d~~ 135 (527) .=+++||++++--.-....- |..+.+ +....| +.|=+ ...+-.++..+-||+..=|-|+..+.-++. T Consensus 62 -----~ia~~iVd~~~d~~~~~~~~-i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~ 135 (449) T protein:vir:10 62 -----GIAHGAVEKLVGKCWQTNPE-IIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDE 135 (449) T ss_pred -----chhHHHHHhhhhhhhhcCcc-cccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEecCC Confidence 11778888876644232222 221111 111111 11111 012234678888998877777666555544 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccc Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYE 215 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~ 215 (527) |+- ++ |.. ++ +.+..++-.|.|... +. +| ..+ | .+.=++.-..|. T Consensus 136 ~~l---------~~----Pl~-~~--~~i~~i~v~~~~~i~--~~---------~~----~~d--p--~sp~yg~P~~y~ 180 (449) T protein:vir:10 136 KDW---------NL----PAT-KG--RGLQKVSVSWAGSLK--VA---------EW----DTG--I--NSKTYGQPKLWK 180 (449) T ss_pred CCC---------Cc----ccc-cC--cceeeEEeeccccCC--hh---------hh----hcC--C--CCCCCCCceEEE Confidence 431 11 221 21 356666655433221 11 11 111 1 000000111121 Q ss_pred ccccc---ccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhh-------- Q lcl|Aclame:pro 216 PGKWD---DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQT-------- 284 (527) Q Consensus 216 ~g~wd---~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~-------- 284 (527) +.... ......+|.-+ |++|.-.+ ..|.|-|+.+..-+-.+-+. T Consensus 181 v~~~~~g~~~~~~~iH~SR---------------------l~~~~~~~----~~g~~~L~~~yn~l~~~~~~~~~~a~~~ 235 (449) T protein:vir:10 181 YTERLPNGSSRRVDIHPDR---------------------VFILGDYS----EDAIGFLEPAYNAFVSLEKVEGGSGESF 235 (449) T ss_pred EeeeccCCCccceeeccce---------------------eEeecCCC----CCChhHHHHHHHHhhhHHHhhhhHHHHH Confidence 10000 00000111111 12221111 11555554332111111000 Q ss_pred HHHHHHHH--------HHhCCceEEeccCCCcC-CCC-cccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHH Q lcl|Aclame:pro 285 MTDEDLIM--------VFGGLGFYATDSAPPRD-SRG-NMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEE 354 (527) Q Consensus 285 lsd~~~i~--------~~~g~P~~~~~g~~~~d-~~G-~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~ 354 (527) +-+..+.+ .+.+..-.-..|.+... .-- ...-++-+-+. .-+.++..+..++. .+++..+-++.... T Consensus 236 l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~-~~i~~~~d~~~~~~--~~sgl~d~l~~~~q 312 (449) T protein:vir:10 236 LKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGNDV-LMTTQGATVTPLVT--SVADPTATYNVNLQ 312 (449) T ss_pred HHHHHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccchh-eeecCCcceEEEec--ccCChhHHHHHHHH Confidence 00000000 11111100000000000 000 00001111111 12467777888886 57777778888899 Q ss_pred HHHHhhcCch-hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEE Q lcl|Aclame:pro 355 AMQQTKGIPD-IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVT 433 (527) Q Consensus 355 ~l~~vs~tP~-va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~ 433 (527) .++..+++|. +-||+--.+-+ |+--++ -|- ..++.+|-.+.-.++++...|+.. .+++.+ -..+ T Consensus 313 ~iaaa~~IP~t~L~Gqsp~gln-st~D~~-nyy---d~i~~~Q~~l~p~le~l~~~l~~s--------~~g~~~--~d~~ 377 (449) T protein:vir:10 313 TAAAGVDIPTRILIGNQQAERS-STEDQK-YFN---ARCQSRRVDLSFEIEDFCDKLIEL--------KIIDAV--AKKA 377 (449) T ss_pred HHHHHhCCCeeeeeccCccccc-cchhHH-HHH---HHHHHHHHhhhHHHHHHHHHHHHh--------hcCCCC--Ccee Confidence 9999999999 66774422222 221232 233 444444434455666655444221 222222 2468 Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHHHHhcCcccccccccCC Q lcl|Aclame:pro 434 ITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFEL-TEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQG 512 (527) Q Consensus 434 v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~-~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g 512 (527) |.|.|...-+.++.++-..+.. +|...+..+|..+. +.+|+++. +.-++.. + .+ T Consensus 378 i~f~pL~~~t~kEkAei~k~~A--------~a~~~~~~ag~~~~~~~~EiR~~------------~~~~~~~----~-~~ 432 (449) T protein:vir:10 378 VIWDDLNEQTGTEKLTNAKTMG--------EINQTMLGSGDNPAFSREEIRTA------------AGYDNDD----E-EP 432 (449) T ss_pred EEeCCCCCCCHHHHHHHHHHHH--------HHHHHHHHccccCCcCHHHHHHH------------hcccCCC----C-CC Confidence 8999998888777766443332 23444555554322 22322221 1112111 1 11 Q ss_pred CCcc-cccccCCCCCC Q lcl|Aclame:pro 513 IPDE-EDDQALNGQPL 527 (527) Q Consensus 513 ~~d~-~~~~~~~~~~~ 527 (527) .|++ .+..+.+..+- T Consensus 433 ~~~e~~de~~~~~d~~ 448 (449) T protein:vir:10 433 LGEEDGDEEDKATDSA 448 (449) T ss_pred CCCCCCccccccCCcC Confidence 2211 11111122222 No 196 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=95.48 E-value=0.002 Score=35.39 Aligned_cols=377 Identities=11% Similarity=0.098 Sum_probs=149.3 Q ss_pred CCCChhh------hhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHH Q lcl|Aclame:pro 1 MGQDKRQ------YGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLI 74 (527) Q Consensus 1 m~~~~~q------y~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v 74 (527) |++=.+- ++....++-|.....+.+... --+..+..-|-++=.+.-..+....+ -.++.++. T Consensus 1 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Al~~~~V~~~i~~Ia~~iA~lp~~~~-----------~~~g~~~~ 68 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDDYISSVLAGDVSQKYLGVS-ALKNSDILTATSIIAGDIARFPLVKK-----------DVNGDIIH 68 (406) T ss_pred CccccccCCCCCCcchHHHHHhcCCCCcccccch-hhccHHHHHHHHHHHHhhhhCeeEEE-----------ecCccccc Confidence 6553221 111111111111111111110 00111111111111111111111110 00011111 Q ss_pred HhhhhhhccCccccccCcchhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 75 EAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 75 ~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) +....+| |+ .+-| +. .-........++.|.|+..|..|...+ +-..+..++|+ T Consensus 69 ~~~~~~l------------------L~---~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g--~~~~L~~i~p~ 125 (406) T protein:vir:97 69 DEDINYL------------------LN---VKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTN--QALQFQFYRPS 125 (406) T ss_pred cchHHHH------------------hh---ccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCC--eEEEEEEECCC Confidence 1111111 11 1111 11 222334455667899988888775333 33456667777 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) ++-+..++++ ++ .+.+..+. .| ...+ T Consensus 126 ~v~v~~~~~~--~~-----~y~~~~~~--------------------~~-------~~~~-------------------- 151 (406) T protein:vir:97 126 ETTVEETDNH--EI-----VYTFTDML--------------------TA-------KQVK-------------------- 151 (406) T ss_pred eeEEEEcCCc--eE-----EEEEEecC--------------------Cc-------eEEE-------------------- Confidence 6654433321 00 00011100 00 0000 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCce-EEeccCC Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLGF-YATDSAP 306 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P~-~~~~g~~ 306 (527) + +-+. |+||++.+. +..-|.|-|+-+...+. -.+.-...+..+ .+.|- +...+.. T Consensus 152 ----~-----------~~~e--vih~r~~~~-dg~~G~spi~~~~~~i~---~~~a~~~~~~~~f~ng~~~~~i~~~~~~ 210 (406) T protein:vir:97 152 ----C-----------FAHD--VIHWKFFSH-DTILGRSPLLSLGDEID---LQTGGINTLIKFFKDGFSSGILTMKGAQ 210 (406) T ss_pred ----E-----------cccc--EEEecCCCC-CCcccccHHHHHHHHHH---HHHHHHHHHHHHHhccCCCceEEecCCC Confidence 0 0001 678887643 33557777655444443 222222222222 23342 2222222 Q ss_pred CcCCCCcc--ccee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 307 PRDSRGNM--VPWT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 307 ~~d~~G~~--~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) ..+..-+. .-|. -..|.++-|+.+.+|..++..++-..+.+..+...+.|+..=++|...+|.. .+ -|.+ T Consensus 211 l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~-~~--~~~~ 287 (406) T protein:vir:97 211 LSGDARQRARQEFEKMREGSVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGVN-SP--NQSV 287 (406) T ss_pred CCHHHHHHHHHHHHHHhcccccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCCC-CC--cchH Confidence 11111000 0011 1235666688889999999877777788888888899999999999999832 11 1211 Q ss_pred HH------HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 380 AL------DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLE 453 (527) Q Consensus 380 AL------ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~ 453 (527) += +..+.|++. .+++. +-..++...+ ...+.+++.. -.+...-+++..+ T Consensus 288 e~~~~~f~~~~l~P~~~-----------~ie~~---l~~kll~~~~-------~~~~~i~fd~----~~~~~~~~~~~~~ 342 (406) T protein:vir:97 288 AQLMEDYVTNDLPFYFD-----------AITSE---LGLKTLNDKD-------RRLYHIEFDT----RSVTGRNVDEIVK 342 (406) T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHH---HhhhhcChhh-------ccceeEEEec----CccchhhHHHHHH Confidence 11 111222211 11111 1111121111 1112233222 2244455677889 Q ss_pred HHhcCCccHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHHH-HhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 454 LWEAGLIPAKKLTEELSKIMGFELTEED-FRQATEDKKTQGIAQA-EAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 454 l~~aGlls~~ta~~~L~~~g~~~~~e~~-~~~~~e~~a~~a~~~~-aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) ++++|+++..++.++| |.+|-++. -.+...-.-..-.+.. .--|..+. ...+|-.++++|++ T Consensus 343 ~~~~g~~T~NE~R~~~----g~~p~~~~~gD~~~~~~n~~~~~~~~~~~~~~~~--~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 343 LVNNQILTPNQGLVEL----GKQKSTDPNMDRYQSSLNYVFLDKKEEYQDKVGI--KGKGGEVNAEEDKS 406 (406) T ss_pred HHhCCCcCHHHHHHHh----CCCCCCCCCCCeEeeccCccchhccccccccccc--ccCCCCCCCCCCCC Confidence 9999999999999987 44442221 1110000000000000 01122221 12233335555655 No 197 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=95.45 E-value=0.002 Score=35.33 Aligned_cols=389 Identities=11% Similarity=0.035 Sum_probs=167.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHH-----HHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLA-----SYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~-----aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~ 75 (527) |+. ..-.++|... .......+...+......+. ..++-....+| + .|+ T Consensus 1 Mg~---------------------f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~v~--~---cv~ 53 (416) T protein:vir:81 1 MGI---------------------FYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYK-DIEAIRHSDIF--T---AVM 53 (416) T ss_pred CCc---------------------ccccccccccCCCcchhHHHHHhccccccCccccc-hhhhhcchHHH--H---HHH Confidence 554 2222221110 00011111111100000010 00000001111 1 222 Q ss_pred hhhhhhccCccccccCcchhH-HH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 76 AKMRFLGQGLKWEFSKKDAKV-DD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 76 ~~~~~Lg~~~~~~i~~~~~~v-~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) .+++-+ -..+..+...++.. +. ..+-+-.+=| |. .-........++.|.|+..|..|. + |+=+.+..++| T Consensus 54 ~Ia~~i-A~~p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~--G~~~~L~~i~~ 129 (416) T protein:vir:81 54 MIASDL-ARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK-T--GEPMNLTFRKT 129 (416) T ss_pred HHHHhh-ccCceEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C--CcEEEEEEEcC Confidence 222222 11234443333221 11 1111221111 11 222444555667899988888874 2 33345778888 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEP 229 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~ 229 (527) +.+-+..+.+ +.+...+ ...+ ..+ .....+ T Consensus 130 ~~v~v~~~~~--g~~~~~~-----~~~~-------------------~~~-----~~~~~~------------------- 159 (416) T protein:vir:81 130 SEIELKSDAR--GRLYYFH-----QRID-------------------SNG-----NNIERN------------------- 159 (416) T ss_pred ceeEEEECCC--ccEEEEE-----EEec-------------------CCC-----ceeEEE------------------- Confidence 8887776544 2221110 0000 000 000000 Q ss_pred cceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE--eccCCC Q lcl|Aclame:pro 230 DDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA--TDSAPP 307 (527) Q Consensus 230 ~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~--~~g~~~ 307 (527) ++ .=-|+||++.+ .+...|.|-|+-+...++-.+..-.-......-.+.|-.+ +.+.. T Consensus 160 --------------~~----~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~- 219 (416) T protein:vir:81 160 --------------VK----FEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVL- 219 (416) T ss_pred --------------Ec----cccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCC- Confidence 00 01257888764 3457788876665555544333322222222334556433 33322 Q ss_pred cCCCCc-c--ccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccH Q lcl|Aclame:pro 308 RDSRGN-M--VPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESG 378 (527) Q Consensus 308 ~d~~G~-~--~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG 378 (527) .|++.. . .-|+ -..|.++-++++-++..++..++-..+.+..+...+.|+..-++|..-+|..+.++ |- T Consensus 220 ~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~~ 297 (416) T protein:vir:81 220 DNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM--SI 297 (416) T ss_pred CCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc--cH Confidence 122110 0 1111 12355666888889999998778788889999999999999999999998433221 21 Q ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 379 IALDLKLS-AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 379 ~ALql~~~-PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) ...++.|. -|. .+...+++. +-..++. .. ....+++.+...+-.|.++.++...+++.+ T Consensus 298 ~~~~~~~~~~l~--------P~~~~ie~~---ln~~l~~--------~~-~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~ 357 (416) T protein:vir:81 298 TDANLDYLSTLK--------PYITCVCAE---LNFKFND--------EY-VNREFKFDTTEIRVVDEKTQAEIDKINIDS 357 (416) T ss_pred HHHHHHHHHHHH--------HHHHHHHHH---Hhhhccc--------cc-cCceEEEechhhhccCHHHHHHHHHHHHhC Confidence 12222211 010 011122221 1111111 11 123356667777777999999999999999 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH----HHHHhcCcccccccccCCCCcc Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGI----AQAEAADPFGAQMAAEQGIPDE 516 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~----~~~aa~d~~g~~~~~d~g~~d~ 516 (527) |+++..++.++| |.+|-+.-.....-.-....- .+.-...+-.......||...+ T Consensus 358 G~~T~NE~R~~~----gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 358 GKMNIDEIRQRD----GLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred CCcCHHHHHHHh----CCCCCCCCCcceEeecccccccccccccCcccccccccccCCCCCCC Confidence 999999999877 555533222111000000000 0000011111111111222211 No 198 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=95.45 E-value=0.002 Score=35.33 Aligned_cols=389 Identities=11% Similarity=0.035 Sum_probs=167.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHH-----HHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLA-----SYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~-----aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~ 75 (527) |+. ..-.++|... .......+...+......+. ..++-....+| + .|+ T Consensus 1 Mg~---------------------f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~v~--~---cv~ 53 (416) T protein:vir:45 1 MGI---------------------FYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYK-DIEAIRHSDIF--T---AVM 53 (416) T ss_pred CCc---------------------ccccccccccCCCcchhHHHHHhccccccCccccc-hhhhhcchHHH--H---HHH Confidence 554 2222221110 00011111111100000010 00000001111 1 222 Q ss_pred hhhhhhccCccccccCcchhH-HH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 76 AKMRFLGQGLKWEFSKKDAKV-DD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 76 ~~~~~Lg~~~~~~i~~~~~~v-~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) .+++-+ -..+..+...++.. +. ..+-+-.+=| |. .-........++.|.|+..|..|. + |+=+.+..++| T Consensus 54 ~Ia~~i-A~~p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~-~--G~~~~L~~i~~ 129 (416) T protein:vir:45 54 MIASDL-ARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK-T--GEPMNLTFRKT 129 (416) T ss_pred HHHHhh-ccCceEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C--CcEEEEEEEcC Confidence 222222 11234443333221 11 1111221111 11 222444555667899988888874 2 33345778888 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEP 229 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~ 229 (527) +.+-+..+.+ +.+...+ ...+ ..+ .....+ T Consensus 130 ~~v~v~~~~~--g~~~~~~-----~~~~-------------------~~~-----~~~~~~------------------- 159 (416) T protein:vir:45 130 SEIELKSDAR--GRLYYFH-----QRID-------------------SNG-----NNIERN------------------- 159 (416) T ss_pred ceeEEEECCC--ccEEEEE-----EEec-------------------CCC-----ceeEEE------------------- Confidence 8887776544 2221110 0000 000 000000 Q ss_pred cceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE--eccCCC Q lcl|Aclame:pro 230 DDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA--TDSAPP 307 (527) Q Consensus 230 ~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~--~~g~~~ 307 (527) ++ .=-|+||++.+ .+...|.|-|+-+...++-.+..-.-......-.+.|-.+ +.+.. T Consensus 160 --------------~~----~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~- 219 (416) T protein:vir:45 160 --------------VK----FEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVL- 219 (416) T ss_pred --------------Ec----cccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCC- Confidence 00 01257888764 3457788876665555544333322222222334556433 33322 Q ss_pred cCCCCc-c--ccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccH Q lcl|Aclame:pro 308 RDSRGN-M--VPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESG 378 (527) Q Consensus 308 ~d~~G~-~--~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG 378 (527) .|++.. . .-|+ -..|.++-++++-++..++..++-..+.+..+...+.|+..-++|..-+|..+.++ |- T Consensus 220 ~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~~ 297 (416) T protein:vir:45 220 DNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANM--SI 297 (416) T ss_pred CCHHHHHHHHHHHHHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCc--cH Confidence 122110 0 1111 12355666888889999998778788889999999999999999999998433221 21 Q ss_pred HHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 379 IALDLKLS-AILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEA 457 (527) Q Consensus 379 ~ALql~~~-PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~a 457 (527) ...++.|. -|. .+...+++. +-..++. .. ....+++.+...+-.|.++.++...+++.+ T Consensus 298 ~~~~~~~~~~l~--------P~~~~ie~~---ln~~l~~--------~~-~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~ 357 (416) T protein:vir:45 298 TDANLDYLSTLK--------PYITCVCAE---LNFKFND--------EY-VNREFKFDTTEIRVVDEKTQAEIDKINIDS 357 (416) T ss_pred HHHHHHHHHHHH--------HHHHHHHHH---Hhhhccc--------cc-cCceEEEechhhhccCHHHHHHHHHHHHhC Confidence 12222211 010 011122221 1111111 11 123356667777777999999999999999 Q ss_pred CCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH----HHHHhcCcccccccccCCCCcc Q lcl|Aclame:pro 458 GLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGI----AQAEAADPFGAQMAAEQGIPDE 516 (527) Q Consensus 458 Glls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~----~~~aa~d~~g~~~~~d~g~~d~ 516 (527) |+++..++.++| |.+|-+.-.....-.-....- .+.-...+-.......||...+ T Consensus 358 G~~T~NE~R~~~----gl~p~~~gd~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 358 GKMNIDEIRQRD----GLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred CCcCHHHHHHHh----CCCCCCCCCcceEeecccccccccccccCcccccccccccCCCCCCC Confidence 999999999877 555533222111000000000 0000011111111111222211 No 199 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=95.43 E-value=0.0021 Score=35.27 Aligned_cols=392 Identities=12% Similarity=0.067 Sum_probs=167.9 Q ss_pred CC------------------CChhhhhhhhHHhhcccCCCCCCChHHHHHH----HHHHHHHHHhcCChhheEeeecCCc Q lcl|Aclame:pro 1 MG------------------QDKRQYGSTQQLRAGEANFPNAVTDFDKARL----ASYRLYEDMYLTNTSDYQVILRGGD 58 (527) Q Consensus 1 m~------------------~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl----~aY~~~~~~y~~~~~~~~~i~~g~d 58 (527) |+ -...+.++...-+.++.- -+.++. +.+.+ ....+|+++.. | T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~-~~~~iLr~~~~~~ly~~m~~-------------D 65 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSY-DVVVDR-EFDELLQGKDGLLVYHKMLS-------------D 65 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhccccc-cccccc-chhHhhccccchHHHHHHhh-------------C Confidence 22 222222222222222111 122221 11111 12334444431 1 Q ss_pred ccccccccCCchhHHHHhhhhhhccCccccccCcchh-----HHHHHHHHHHhcCch------hhHHHHhHhhhhcccEE Q lcl|Aclame:pro 59 EGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAK-----VDDAIRVLFDRENWE------QKFESLKRWTEIRGDYV 127 (527) Q Consensus 59 ~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~-----v~~~lr~w~~~e~l~------~k~~~~~r~a~~~GDav 127 (527) +--.-.+++...-+ .+.+|.|...+++ +.+.++.|....++. .++..--=+|+..|-+| T Consensus 66 ---------~hi~s~l~~Rk~av-~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~lda~~~G~s~ 135 (448) T protein:vir:79 66 ---------GTVKNALNYIFGRI-RSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAA 135 (448) T ss_pred ---------hHHHHHHHHHHHHH-hcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHHhhhhccee Confidence 11123455544444 4568888644433 455667776543221 12333344688899999 Q ss_pred EEEEecCCCCCccceEEEEE---ccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCC Q lcl|Aclame:pro 128 LLLIGDDEKDEGSRLSLHEV---DPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPG 204 (527) Q Consensus 128 ~~i~~d~~k~~~~r~~i~~v---dP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~ 204 (527) +-+.|+...+ | +..+..+ +|.. +..+++ ++++. +++..+ . + T Consensus 136 ~Eivw~~~~~-g-~~~~~~l~~r~~~~------------~~~f~~-----~~d~~---l~~~~~-~--------~----- 179 (448) T protein:vir:79 136 GEIVLTLGAD-G-KLILDKIVPIHPFN------------IDEVLY-----DEEGG---PKALKL-S--------G----- 179 (448) T ss_pred EEEEeeecCC-C-ceecccccccCCcc------------ccceee-----ecCCc---eEEeec-C--------C----- Confidence 9999985332 1 2211111 1110 001100 11111 110000 0 0 Q ss_pred ccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhh Q lcl|Aclame:pro 205 GAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQT 284 (527) Q Consensus 205 g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~ 284 (527) .+..+.+. .+-++.|.+.+ ||+.+. ..+.++|.+-|..+.-..---+.. T Consensus 180 --------~~~~~~~~--------------------~~~~~lP~~~~--i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~ 228 (448) T protein:vir:79 180 --------EVKGGSQF--------------------VSGLEIPIWKT--VVFLHN-DDGSFTGQSALRAAVPHWLAKRAL 228 (448) T ss_pred --------cccccccC--------------------CCccccccceE--EEEecC-ccCCcccchhHHHHHHHHHHHHHH Confidence 00000000 00113344443 455554 567899999999988888888899 Q ss_pred HHHHHHHHHHhCCceEEeccC---CCcCCC---Cc--ccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHH Q lcl|Aclame:pro 285 MTDEDLIMVFGGLGFYATDSA---PPRDSR---GN--MVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAM 356 (527) Q Consensus 285 lsd~~~i~~~~g~P~~~~~g~---~~~d~~---G~--~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l 356 (527) +.+....++..|.|+.+..-. ...+.+ -. +..+..+--...=+|++.++..+....+...+.+.+++..++| T Consensus 229 ~~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~I 308 (448) T protein:vir:79 229 ILLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGI 308 (448) T ss_pred HHHHHHHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCcccHHHHHHHHHHHH Confidence 999999999999998765432 211111 11 1111112223333889999999998777777888999988888 Q ss_pred HHhhcCchhhcccccccccccHH-HHHH-HhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhcccccccceeEE Q lcl|Aclame:pro 357 QQTKGIPDIAVGVVDAAVAESGI-ALDL-KLSAILSSCAEQELELKSVLKQFF-YNLVTQWLPAYEGVGIDDADKKLTVT 433 (527) Q Consensus 357 ~~vs~tP~va~G~~d~s~a~SG~-ALql-~~~PLlakv~~krl~~~~~~~q~~-~~li~~~L~~~e~v~~~~~~~~~~v~ 433 (527) +.+. +|.+-.|.+.+|. +..+ ...-+..... ..-.+-+...+ +.++..++ .+-+. ....... T Consensus 309 sk~i------LGqtlTs~~~~g~~~~~~~~~~~v~~~~~---~aDa~~i~~tln~~li~~l~----~lNfg--~~~~~P~ 373 (448) T protein:vir:79 309 ARAL------GIDFNTVQLNMGVQAINIGEFVSLTQQTI---ISLQREFASAVNLYLIPKLV----LPNWP--SATRFPR 373 (448) T ss_pred HHHH------hhhhhccccccchhhhhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HhcCC--CcCCCcE Confidence 7743 3443222221221 1111 1111111100 01111122222 23443332 22222 1222357 Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccc-cccCC Q lcl|Aclame:pro 434 ITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQM-AAEQG 512 (527) Q Consensus 434 v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~-~~d~g 512 (527) ++|...-|.|..+.++.+.+|...+-.+.+-.-++ ...-++..... .+-+. T Consensus 374 ~~f~~~e~~Dl~~~a~~~~~l~~~~~~~~~~~~~~----------------------------~~~p~~~~~~~~~a~~~ 425 (448) T protein:vir:79 374 LTFEMEERNDFSAAANLMGMLINAVKDSEDIPTEL----------------------------KALIDALPSKMRRALGV 425 (448) T ss_pred EEecCCChHHHHHHHHHhhhhhccchhhHHHHHHh----------------------------hcCCCCCCCccccccCC Confidence 88988888776666665555543322111111100 01111111000 01011 Q ss_pred CC-c-ccccccCCCCCC Q lcl|Aclame:pro 513 IP-D-EEDDQALNGQPL 527 (527) Q Consensus 513 ~~-d-~~~~~~~~~~~~ 527 (527) .+ . ++..+..+..-| T Consensus 426 ~~~~~~~~~~~~~~~~~ 442 (448) T protein:vir:79 426 VDEVREAVRQPADSRYL 442 (448) T ss_pred CCcccccccCCccccch Confidence 11 1 112222333333 No 200 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=95.38 E-value=0.0022 Score=35.18 Aligned_cols=441 Identities=14% Similarity=0.084 Sum_probs=168.5 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHH--HHH-HHHHHhcCChhheEeeecCCccccccccc-----CCchhH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLA--SYR-LYEDMYLTNTSDYQVILRGGDEGDQRPIY-----VPNGEK 72 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~--aY~-~~~~~y~~~~~~~~~i~~g~d~~~~~~~~-----~p~~~k 72 (527) |.=+-.-= .-+++.-.+++= |.+ -..+||.+. -.+|||+.. ...| .+--.- T Consensus 1 ~~~~~~~~--------------~gl~p~rl~~i~~~~~~~~~~~~~~~~----~~~Lr~~~~---~~ly~~m~~D~hi~s 59 (488) T protein:vir:95 1 MADITETQ--------------ESLPPFRMGEVGSLGLKVKNGRIYEEP----RQALRFPES---IKTFQLMMRDPAVAA 59 (488) T ss_pred CCCccccC--------------CCCCHHHHHHHHHHhhccccchhhccc----hhhhcccch---HHHHHHHhhChHHHH Confidence 43222211 112221111110 000 011222211 112333221 1111 111223 Q ss_pred HHHhhhhhhccCccccccCcchh--------HHHHHHHHHHhc--CchhhHHHHhHhhhhcccEEEEEEecCCCCCccce Q lcl|Aclame:pro 73 LIEAKMRFLGQGLKWEFSKKDAK--------VDDAIRVLFDRE--NWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) Q Consensus 73 ~v~~~~~~Lg~~~~~~i~~~~~~--------v~~~lr~w~~~e--~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~ 142 (527) .+++..+.+ .+.+|.|..++.+ ..++++.|+..- .++.-+... =+|+..|=+|+-|.|....+. .++ T Consensus 60 ~l~~Rk~av-~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~-lda~~~G~s~~Eivw~~~~~~-~~~ 136 (488) T protein:vir:95 60 SVNIIKMFV-RKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSV-MSFCTYGFCVNEKVYKKRQGK-KGK 136 (488) T ss_pred HHHHHHHHH-hcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHH-HHhhcccceeeeeeeeccccc-ccc Confidence 455544444 4668888644321 234566666421 132333333 368889999999999864331 111 Q ss_pred EEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccc Q lcl|Aclame:pro 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) Q Consensus 143 ~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~ 222 (527) ....++-+.+-| ..+ . |+.++.. +|.. ++.++..+. .+..+...+.+... T Consensus 137 ~~~~~~dg~~~~----------~~i--~--~Rpq~~~-------~~f~----~d~d~~l~~-----~~~~~~~~~~~~~~ 186 (488) T protein:vir:95 137 YQSKFDDGLIGW----------AKL--P--IRNQSTL-------DKWY----FDEDFRRVT-----GVRQNLRNVSHIAG 186 (488) T ss_pred ccccccCCeeee----------eee--e--ecCcccc-------ccee----eccCCCcee-----eccccccccccccc Confidence 111111111111 111 1 1111110 0111 111111100 00000000000000 Q ss_pred ccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEe Q lcl|Aclame:pro 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYAT 302 (527) Q Consensus 223 ~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~ 302 (527) ............|| +-.| |+|.. .+..+.++|.+-|..+--..--=|..+.+....++..|.|+... T Consensus 187 ---------~~~~~~~~~~~~lP-~~kf--i~~~~-~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~ 253 (488) T protein:vir:95 187 ---------AINLGERPLTRKLP-RAKF--MLFKY-DDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKI 253 (488) T ss_pred ---------cccccccccccccc-ccce--EEEee-cCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeE Confidence 00000000001112 2223 44443 44678999999999987777777888889999999887776554 Q ss_pred ccCC---CcCCCCccc-ce----e--------cCCCeeEecC--CCC-----ceEEeccc-cChHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 303 DSAP---PRDSRGNMV-PW----T--------ISPLGMVEHG--QNN-----KIYRVNGV-ASLEPSQTHMNKAEEAMQQ 358 (527) Q Consensus 303 ~g~~---~~d~~G~~~-p~----~--------v~pg~~~el~--~~~-----k~~~ld~~-~~la~~~~~~d~L~~~l~~ 358 (527) .+.+ +.+.+.+.. -+ . ..-|.++..+ .+. +|..+..+ .+...|...+++..++|+. T Consensus 254 ~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk 333 (488) T protein:vir:95 254 GLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMM 333 (488) T ss_pred eeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHH Confidence 4422 111111100 00 0 0023333222 112 23333322 1445688889999888887 Q ss_pred hhcCchhhccccccc--ccccHHHHH-HHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhcccccccceeEEE Q lcl|Aclame:pro 359 TKGIPDIAVGVVDAA--VAESGIALD-LKLSAILSSCAEQELELKSVLKQFF-YNLVTQWLPAYEGVGIDDADKKLTVTI 434 (527) Q Consensus 359 vs~tP~va~G~~d~s--~a~SG~ALq-l~~~PLlakv~~krl~~~~~~~q~~-~~li~~~L~~~e~v~~~~~~~~~~v~v 434 (527) +- +|.+-.+ ...|+.|+- ....-....++.= .+.+...+ +.++..++ .+-+. .....+.+ T Consensus 334 ~i------LGqtLT~~~~~~Gs~Al~~vh~ev~~~i~~aD----a~~i~~tln~~li~~l~----~~Nfg--~~~~~P~~ 397 (488) T protein:vir:95 334 AF------MSDVLAMGQSKYGSFSLADSKTSLLAMSVDIL----LKQIKNVINRDLVAQTY----ALNMW--DDEEHVQI 397 (488) T ss_pred HH------hccccccccCcchhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH----HhcCC--CCCCccEE Confidence 53 4433221 112333432 1111111111111 11122222 23333222 12121 22334678 Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcCCccHH-HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 435 TFRDPKPVNNEKRFAQLLELWEAGLIPAK-KLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 435 ~w~d~lP~D~~~~i~~~v~l~~aGlls~~-ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) +|...-|.|.++.++.+.+|++.|++-.. .....+.+..|.+.+.++.... ..... ..+.++.+...+...+..-. T Consensus 398 ~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~ 474 (488) T protein:vir:95 398 TYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVS-EKLSP--NSQSRSGDGYKTAGEGTAKT 474 (488) T ss_pred EecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCcccc-ccCCC--CCCCCCCcccCCCcccCCcc Confidence 99999999988999999999999996542 2223344444555443322111 00000 00000000000000000011 Q ss_pred CcccccccCCCCCC Q lcl|Aclame:pro 514 PDEEDDQALNGQPL 527 (527) Q Consensus 514 ~d~~~~~~~~~~~~ 527 (527) ++.++.+.-|---= T Consensus 475 ~~~~~~~~a~~~~~ 488 (488) T protein:vir:95 475 PSAKDPSTANKANK 488 (488) T ss_pred cccccchhhhhccC Confidence 11111100000000 No 201 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=95.27 E-value=0.0024 Score=34.95 Aligned_cols=384 Identities=10% Similarity=0.025 Sum_probs=170.1 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |++-.+ ...|+..... -+...+. .+..+..+.... .+++ ...|.-...|+.+++- T Consensus 1 MG~~~~----~~~~~~~~~~---~~~~~~~-------~~~~~~g~~~~~------~~~a-----l~~~~V~~~v~~Ia~~ 55 (411) T protein:vir:81 1 MGWWSR----LTRFFRPRNE---TVDMTNP-------LLLQWLGVDPDT------PRNQ-----LSEATYFACLKILSES 55 (411) T ss_pred CchHHH----HHhhccCccc---ccccchH-------HHHHHhcCcccC------hhhh-----hccHHHHHHHHHHHHh Confidence 776533 1222222211 0010010 111222111100 0111 1111112233332222 Q ss_pred hccCccccc---cCcc-hh-----HHHHHHHHHHhcC-ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 81 LGQGLKWEF---SKKD-AK-----VDDAIRVLFDREN-WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 81 Lg~~~~~~i---~~~~-~~-----v~~~lr~w~~~e~-l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) ++ ..+..+ +..+ .+ +...|+. ..|. +. .-........++.|.|+..+.+|. |+-+.+..++ T Consensus 56 iA-~lp~~~~~~~~~~~~~~~~~~l~~lL~~--~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~----g~~~~l~~l~ 128 (411) T protein:vir:81 56 LG-KLPLKMYQKTERGIVKSDREELYNLLKL--RPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYSG----PQLQALWILP 128 (411) T ss_pred Hh-hCceeEEEecCCceeeecccHHHHHHhh--ccCCCCCHHHHHHHHHHHHhhcCCeEEEEEecC----CceEEEEEEC Confidence 21 112222 1111 11 1222221 1111 11 233445556677899988888873 2334567788 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |+.+=+..+++.... .+-.....|. ...+|.. .+ T Consensus 129 ~~~v~~~~~~~~~~~-------------------~~~~~~~~~~--~~~~g~~-------~~------------------ 162 (411) T protein:vir:81 129 SQYVTIVVDDRGLLG-------------------EKNAIWYRYN--DPYDGKM-------YV------------------ 162 (411) T ss_pred CceEEEEEcCccccc-------------------ccceEEEEEE--ecCCceE-------EE------------------ Confidence 888766655432110 0000000110 0000000 00 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) + + .==|+||++..+.+...|.|-+.-+...+......-.-......-.+.|-.+++..... T Consensus 163 ---------------~--~--~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l 223 (411) T protein:vir:81 163 ---------------F--R--NDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDL 223 (411) T ss_pred ---------------E--c--cccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC Confidence 0 0 01188998654556788988776665555444333222223333345575554332222 Q ss_pred CCCC-c--cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 309 DSRG-N--MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 309 d~~G-~--~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) +++- + ..-|. -+-|.++-++++-+|..++..+.-..+.+..+...+.|+..-++|++-+|..+.++-.+.. T Consensus 224 ~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e 303 (411) T protein:vir:81 224 NQEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAE 303 (411) T ss_pred CHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHH Confidence 2210 0 00111 1235566688888999998766666777888899999999999999999866433221111 Q ss_pred -----HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 380 -----ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLEL 454 (527) Q Consensus 380 -----ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l 454 (527) -++-.+.|++. .+++ .+-..+|...+ + .....+++.+...+-.|.++.++...++ T Consensus 304 ~~~~~f~~~~l~P~~~-----------~ie~---~l~~~ll~~~~-~-----~~~~~~~fd~~~ll~~d~~~~~~~~~~~ 363 (411) T protein:vir:81 304 AQNLAFYVDTLLYVLK-----------QYEE---EITYKILSNDL-I-----SQGHYFKFNVNVILRADIKTQMDSLSTA 363 (411) T ss_pred HHHHHHHHHHHHHHHH-----------HHHH---HHHhhcCChhh-c-----CCCcEEEeechhhhccCHHHHHHHHHHH Confidence 12222233222 1111 11112221111 0 1123466667777888999999999999 Q ss_pred HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH-HHHhcCcccccccccC Q lcl|Aclame:pro 455 WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIA-QAEAADPFGAQMAAEQ 511 (527) Q Consensus 455 ~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~-~~aa~d~~g~~~~~d~ 511 (527) +.+|+++.-++.+++ |.+|-+ .-.+. ....... ...+++. ..-+||+ T Consensus 364 ~~~g~~t~NE~R~~~----gl~p~~-ggD~~---~~~~n~~pl~~~~~~--~~kgGd~ 411 (411) T protein:vir:81 364 VQNGIMTPNEARDYL----DMPADD-YGNNL---MANGNYIPLSMLGAN--YGKGGDS 411 (411) T ss_pred HhCCCcCHHHHHHHh----CCCCCC-CCCee---eeccCccchhhhhhh--hccCCCC Confidence 999999999998876 444432 11110 0000000 0000110 1112222 No 202 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=95.14 E-value=0.0027 Score=34.68 Aligned_cols=375 Identities=13% Similarity=0.101 Sum_probs=161.8 Q ss_pred CCC--ChhhhhhhhHHhhcccC----------------CC--CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccc Q lcl|Aclame:pro 1 MGQ--DKRQYGSTQQLRAGEAN----------------FP--NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEG 60 (527) Q Consensus 1 m~~--~~~qy~~~~~~~~~~~~----------------~~--~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~ 60 (527) |-. +.--+...+.++.|... +. ..|+...--|+.+..-|-++=.+.-.++-..+ T Consensus 8 ~~~~~~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~v------ 81 (424) T protein:vir:18 8 IDLRTNNGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDV------ 81 (424) T ss_pred cccCCCCchHHHHHhhccccccccccchhhccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEE------ Confidence 110 01111122222222211 00 00122222222222222222222211111000 Q ss_pred ccccccCCchhHHHHhhhhhhccCccccccCcc--hhH--HH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 61 DQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKD--AKV--DD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 61 ~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~--~~v--~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~ 131 (527) |.....+ .++ .. ..+.+-.+-| +. .-........++.|.|+..|. T Consensus 82 --------------------------y~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~ 135 (424) T protein:vir:18 82 --------------------------FETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVD 135 (424) T ss_pred --------------------------EEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEE Confidence 1111111 111 11 1111111111 11 123445556777899988887 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeee Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTE 211 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~ 211 (527) .+. .|+-+.+..++|..+-+..+.+ . +.|+ +..+|.. T Consensus 136 r~~---~G~~~~L~~l~~~~v~v~~~~~---~-------------------------~~y~--~~~~g~~---------- 172 (424) T protein:vir:18 136 RNS---AGDVISLLPLQSANMDVKLVGK---K-------------------------VVYR--YQRDSEY---------- 172 (424) T ss_pred ECC---CCcEEEEEEecCcceEEEEcCC---e-------------------------EEEE--EEeCCeE---------- Confidence 763 3445667777777765433221 0 0111 0000100 Q ss_pred cccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 212 ELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLI 291 (527) Q Consensus 212 ~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i 291 (527) ..+ + .=-|+|+++... +..+|.|-|+-+ ..+|...++-.... T Consensus 173 ---------------------~~~---------~----~~eVihir~~~~-dg~~G~spi~~~---~~~i~~~~~~~~~~ 214 (424) T protein:vir:18 173 ---------------------ADF---------S----QKEIFHLKGFGF-TGLVGLSPIAFA---CKSAGVAVAMEDQQ 214 (424) T ss_pred ---------------------EEe---------c----cccEEEecCcCC-CCcccccHHHHH---HHHHHHHHHHHHHH Confidence 000 0 012688887643 457787766544 44444433333333 Q ss_pred HHH---hCCceEEecc-CCCcCCC--Ccc-ccee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 292 MVF---GGLGFYATDS-APPRDSR--GNM-VPWT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQT 359 (527) Q Consensus 292 ~~~---~g~P~~~~~g-~~~~d~~--G~~-~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~v 359 (527) ..+ .+.|-..++- ....+++ -+. .-|+ .+-|.+.-|+++-+|..++..++-..+.+..+...+.|+.. T Consensus 215 ~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~ 294 (424) T protein:vir:18 215 RDFFANGAKSPQILSTGEKVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARF 294 (424) T ss_pred HHHHhccCCcceEEEeCCcCCCHHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHH Confidence 332 3456333321 1111210 000 0111 11244555888889999998777777888889999999999 Q ss_pred hcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCC Q lcl|Aclame:pro 360 KGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDP 439 (527) Q Consensus 360 s~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~ 439 (527) =++|.+-+|-.+.++. .|..++-+..-++..+-.- +...+++. +-..+++. .....+.+++.+... T Consensus 295 fgVPp~~lg~~~~~t~-~~sn~eq~~~~f~~~tl~P---~~~~ie~~---ln~~L~~~-------~~~~~~~~~fd~~~l 360 (424) T protein:vir:18 295 FGVPPHLVGDVEKSTS-WGSGIEQQNLGFLQYTLQP---YISRWENS---IQRWLIPS-------KDVGRLHAEHNLDGL 360 (424) T ss_pred hCCCHHHhCCCCCccc-ccccHHHHHHHHHHHHHHH---HHHHHHHH---HHhhcCCc-------cccCCeEEEEechhh Confidence 9999999996654321 2222321111111111100 01112221 11112211 111234567778888 Q ss_pred CCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccc-ccccCCC Q lcl|Aclame:pro 440 KPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQ-MAAEQGI 513 (527) Q Consensus 440 lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~-~~~d~g~ 513 (527) +..|.++.++...++.++|+++..++.+++ |.+|-+. -.+ ........ . .+..|.+ --.|+|. T Consensus 361 lr~d~~~r~~~~~~~~~~G~~T~NE~R~~~----gl~pi~g-gD~---~~~~~n~~--~-l~~~~~~~~~~~n~a 424 (424) T protein:vir:18 361 LRGDSASRAAFMKAMGESGLRTINEMRRTD----NMPPLPG-GDV---AMRQAQYV--P-ITDLGTNKEPRNNGA 424 (424) T ss_pred hccCHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCCC-cCe---eeeccCcc--c-hhhhhccCCccccCC Confidence 999999999999999999999999999976 4454322 111 00000000 0 0000100 0122222 No 203 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=95.07 E-value=0.0028 Score=34.55 Aligned_cols=389 Identities=12% Similarity=0.038 Sum_probs=167.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |-+.+.- ..-...++..|.. +.++...++.. ..| -.+++-... .....|+.++.- T Consensus 1 m~f~~~~-----------~~~~~~~~~~~~~-------~~~~~g~~~~~-~~v-~~~~al~~~-----~v~~~i~~ia~~ 55 (409) T protein:vir:10 1 MLFRKGF-----------KNQSQEISIDDKK-------ILEWLGINPSE-TYV-NGKSCLKQA-----TVFGCIRILSDN 55 (409) T ss_pred Ccccccc-----------cCcCCCCCCChHH-------HHHHhcCCcCc-cee-chhhhhccH-----HHHHHHHHHHHh Confidence 5443320 0000001111110 01111111100 000 011111111 111222222222 Q ss_pred hccCccccc---cCcchh-----HHHHHHHHHHhcC-ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEcc Q lcl|Aclame:pro 81 LGQGLKWEF---SKKDAK-----VDDAIRVLFDREN-WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDP 149 (527) Q Consensus 81 Lg~~~~~~i---~~~~~~-----v~~~lr~w~~~e~-l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP 149 (527) ++ ..+..+ +.+..+ +...|+. .-|. +. .-..+.....++.|.|+..+.++. .|+-+.+..++| T Consensus 56 ia-~lp~~~~~~~~~~~~~~~~~l~~lL~~--~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~---~G~~~~L~~i~~ 129 (409) T protein:vir:10 56 IS-KLPIKIYQKKDGIKRVPDHYLEYLLKL--RPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKK---NGEIKGLYPLKS 129 (409) T ss_pred hh-hCceEEEEecCCeeeccCchHHHHHhh--ccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC---CCcEEEEEEEcC Confidence 21 111111 111111 1112211 0111 11 122345556777899999998874 234456666777 Q ss_pred ceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccc Q lcl|Aclame:pro 150 STYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEP 229 (527) Q Consensus 150 ~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~ 229 (527) ..+=+..+.+... . -..++.|+-. ...|.. T Consensus 130 ~~V~v~~~~~~~~--~-------------------~~~~~~y~~~-~~~g~~---------------------------- 159 (409) T protein:vir:10 130 DGMKIFVDDTGLL--N-------------------SENNVWYLYT-DDLGQR---------------------------- 159 (409) T ss_pred CceEEEEcCCccc--c-------------------ccceEEEEEE-eCCcee---------------------------- Confidence 7654444332110 0 0011111100 000000 Q ss_pred cceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcC Q lcl|Aclame:pro 230 DDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRD 309 (527) Q Consensus 230 ~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d 309 (527) ..+ + .==|+|+++..+ +..+|.|-|+-+...+...+....-......-.+.|-.+++.....+ T Consensus 160 ---~~~-----------~--~~evih~r~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~ 222 (409) T protein:vir:10 160 ---HKF-----------M--SDEILHFKGLTA-DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDLN 222 (409) T ss_pred ---EEe-----------c--cccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCC Confidence 000 0 011688887643 45789888777666666554444334444444566754443322222 Q ss_pred CCCc--c-ccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH Q lcl|Aclame:pro 310 SRGN--M-VPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) Q Consensus 310 ~~G~--~-~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A 380 (527) ++.. . .-|+ -..|.+.-++.+-++..++..+.-..+.+..+...+.|+..-++|+.-+|..+.++..+ T Consensus 223 ~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~--- 299 (409) T protein:vir:10 223 PEAEEVFKENFERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSN--- 299 (409) T ss_pred HHHHHHHHHHHHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcccc--- Confidence 1100 0 0010 12455666888889999987766677888889999999999999999999665443222 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) .+-+....+..+-.- +...+++.+ -.+++.. ........+++.+...+-.|.++.++...+++.+|++ T Consensus 300 ~e~~~~~f~~~~l~P---~~~~ie~~l---n~kL~~~------~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~ 367 (409) T protein:vir:10 300 ITEQNREFYIDTLQS---ILNMYELEI---NYKLFLI------SEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFK 367 (409) T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHH---HHhhcCc------hhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCc Confidence 111111111111000 111122211 1111111 0111223466667777788999999999999999999 Q ss_pred cHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d 515 (527) +.-++.++| |.+|-+. -.+ ....-.... .+..+.+ ...|++. T Consensus 368 T~NE~R~~l----gl~p~~g-gD~---~~~~~n~~~---~~~~~~~--~~kgGe~ 409 (409) T protein:vir:10 368 TPNEIRELE----EDEPLEG-GDV---LLINGNMIP---VKMAGEQ--YSKGGEK 409 (409) T ss_pred CHHHHHHHh----CCCCCCC-cCe---eeeccCccc---hhhcccc--ccccCCC Confidence 999999876 4444322 111 000000000 0000100 0112222 No 204 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=94.95 E-value=0.0031 Score=34.33 Aligned_cols=415 Identities=11% Similarity=0.066 Sum_probs=155.7 Q ss_pred CCCChhhhh--------h-hhHHhh-------cccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeee--cCCccccc Q lcl|Aclame:pro 1 MGQDKRQYG--------S-TQQLRA-------GEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVIL--RGGDEGDQ 62 (527) Q Consensus 1 m~~~~~qy~--------~-~~~~~~-------~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~--~g~d~~~~ 62 (527) |+--...=- + ...|+. ++...-..|...--.+..+---|-++=.+...++...+ +..+-.-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g~~~ 80 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDTKAYQ 80 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCCccch Confidence 221111000 0 001111 11110000111111121221122222223322222221 11110000 Q ss_pred ccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCch----hhHHHHhHhhhhcccEEEEEEecCCC-C Q lcl|Aclame:pro 63 RPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWE----QKFESLKRWTEIRGDYVLLLIGDDEK-D 137 (527) Q Consensus 63 ~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~----~k~~~~~r~a~~~GDav~~i~~d~~k-~ 137 (527) ...-.....+.+-+..+.+ ........ ............+-|-. .-........++.|.|+..|..+... . T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~ 156 (460) T protein:vir:10 81 QLNNLNISTKGLYSFTQSL-QKNRLDTK---AFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGIN 156 (460) T ss_pred hhhhhhhhhhhhHHHHHHh-hcchhhhc---ccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCcc Confidence 0000001111111111111 00000000 00011111111121211 12234445667889998888776432 1 Q ss_pred CccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccc Q lcl|Aclame:pro 138 EGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPG 217 (527) Q Consensus 138 ~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g 217 (527) .|.=..+..++|+.+=+..+.+... .. ++. +...|. +...|. ..+ T Consensus 157 ~G~~~~L~~l~~~~v~v~~~~~~~~--~~------~~~-----------~~~~~~--~~~~g~-------~~~------- 201 (460) T protein:vir:10 157 AGVPSQMYVLPAHLIKIVLKDDINL--LS------TDS-----------PIKSYM--LIQGDQ-------FIE------- 201 (460) T ss_pred CceeEEEEEEcCceEEEEEcCCCce--ee------eee-----------eeeEEE--EecCce-------eEE------- Confidence 2232346667777766555444211 00 000 000110 000000 000 Q ss_pred cccccccccccccceeeeccCcccccccccccccceEeeCCCCCC-----CCccCCccccchHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 218 KWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIM-----NAMFGRSGLAGLESLIASVNQTMTDEDLIM 292 (527) Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~-----~~~wG~S~Ledl~~l~deLn~~lsd~~~i~ 292 (527) + + .==|+||+...+. ..++|.|-++-+...+.-.+..-.-..... T Consensus 202 -----------------~-----------~--~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f 251 (460) T protein:vir:10 202 -----------------F-----------N--EDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNINSQNSTIDNNVKTM 251 (460) T ss_pred -----------------e-----------c--ccceEEEecCCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 0 0 0015777644332 245687777665554444332222222222 Q ss_pred HHhCCceEEe-ccCCCcCCCCc--cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 293 VFGGLGFYAT-DSAPPRDSRGN--MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 293 ~~~g~P~~~~-~g~~~~d~~G~--~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) .-.+.|-... .+....++.=+ ..-|. -+-|.++-++.+.+|..++..+.-..+.+..+...+.|+..=++| T Consensus 252 ~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP 331 (460) T protein:vir:10 252 QNGGVFGFIHGGSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYDQKAICNALGWS 331 (460) T ss_pred hcCCCcceeeecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCC Confidence 2234453333 22221111000 00111 123556668889999999987777778899999999999999999 Q ss_pred hhhcccccccccccHHHHH--------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEE Q lcl|Aclame:pro 364 DIAVGVVDAAVAESGIALD--------LKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTIT 435 (527) Q Consensus 364 ~va~G~~d~s~a~SG~ALq--------l~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~ 435 (527) +.-+|-.+-++. ++..++ -.+.|++. .+++. +-..+++.++. .....+.+. T Consensus 332 p~~lg~~~~~t~-~~sn~e~~~~~f~~~~l~P~~~-----------~ie~~---ln~kl~~~~~~------~~~~~i~~d 390 (460) T protein:vir:10 332 DKLLNNNEGGGL-NTGNLEEERKRVVTDNIQPDLV-----------ILKQA---FDKKFIKRFKG------YENAVIEWD 390 (460) T ss_pred HHHhCCCCCCCC-ccccHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcCcccc------cCCceEEee Confidence 999996543211 111122 22222222 11111 11122222111 111223333 Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc Q lcl|Aclame:pro 436 FRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) Q Consensus 436 w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d 515 (527) |... +.- .........++.+|+++..++.+++ |.+|-.++-.... . -|+...-..+ .++ T Consensus 391 ~~~l-~~l-~~d~~~~~~~~~~g~~T~NE~R~~~----g~~pi~~~~gD~~--~-----------~~~n~~~~~~--~~~ 449 (460) T protein:vir:10 391 ISEL-PEM-QTDMVAMASWLNTIPVTPNEIRIAM----KYETLNQDGMDIV--F-----------MPSNKVRIDD--VSN 449 (460) T ss_pred cchh-hhH-HHHHHHHHHHHhCCCCCHHHHHHHh----CCCCCCCCCCCee--e-----------ecccccchhh--ccc Confidence 4332 222 2234455678999999999999876 4454322211110 0 0000000000 112 Q ss_pred ccccccCCCCC Q lcl|Aclame:pro 516 EEDDQALNGQP 526 (527) Q Consensus 516 ~~~~~~~~~~~ 526 (527) ...|+..|.++ T Consensus 450 ~~~~~~~nq~~ 460 (460) T protein:vir:10 450 NLIDSAFNQNQ 460 (460) T ss_pred ccCCCcccCCC Confidence 33344444444 No 205 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=94.95 E-value=0.0031 Score=34.32 Aligned_cols=413 Identities=14% Similarity=0.128 Sum_probs=162.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCC------CC-ChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPN------AV-TDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~------~v-~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~ 73 (527) =..+++|=+.+++|....+...+ .+ +..+... ++..|-+|.--.-.+-.+.. +...| |..+ T Consensus 48 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~l~~~~~n~i~~~~I~t~~~----~vA~~---~~~~ 115 (563) T protein:vir:95 48 KSLYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHD-----VLKKFGNNPILNAIILTRSN----QVAMY---CQPA 115 (563) T ss_pred hhhccCCCcchhhhHhhhcccccccccccCCCCcccHHH-----HHHHhhcchHHHHHHHHHHH----HHHHH---hhhh Confidence 12244554455566544332212 11 1122211 12222222100000000000 00000 0000 Q ss_pred HHhhhhhhccCcccccc---Cc-c-hh--HHHHHHHHHHhc---------CchhhHHHHhHhhhhcccEEEEEEecCCCC Q lcl|Aclame:pro 74 IEAKMRFLGQGLKWEFS---KK-D-AK--VDDAIRVLFDRE---------NWEQKFESLKRWTEIRGDYVLLLIGDDEKD 137 (527) Q Consensus 74 v~~~~~~Lg~~~~~~i~---~~-~-~~--v~~~lr~w~~~e---------~l~~k~~~~~r~a~~~GDav~~i~~d~~k~ 137 (527) ..+--|.+++..+. .. . +. ....|..+.... .+..-+.......++.|-|++.+.+.-.. T Consensus 116 ---~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~- 191 (563) T protein:vir:95 116 ---RYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNN- 191 (563) T ss_pred ---hhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecC- Confidence 00000122221110 00 0 11 111222222111 11122334566677789888766554221 Q ss_pred CccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccc Q lcl|Aclame:pro 138 EGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPG 217 (527) Q Consensus 138 ~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g 217 (527) .|+-+.+..+||+.+.+..++++.- . .+.+.|..... | ....+ + T Consensus 192 ~G~~~~L~pl~p~~V~v~~~~~g~~--~--------------------~~~~~y~~~~~--g------~~~~~---~--- 235 (563) T protein:vir:95 192 KTKLEKFIAVDPSTIFYATDKKGKI--I--------------------KGGKRFVQVVD--K------RVVAS---F--- 235 (563) T ss_pred CCceEEEEEeCCceeEEEECCCCce--e--------------------ccceeEEEEeC--C------ceeEE---e--- Confidence 3445567889999999987776321 0 01111211110 1 00000 0 Q ss_pred cccccccccccccceeeeccCcccccccccccccceEeeCCCCC--CCCccCCccccchHHHHHHHHhhHHHHHHHHHH- Q lcl|Aclame:pro 218 KWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPI--MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF- 294 (527) Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~--~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~- 294 (527) +.+- -|+|+.|... ....+|.|-|+-+...+. ..+.-......| T Consensus 236 -----------------------------~~~e-vI~~~~~~~~d~~~~~~G~Spi~~a~~~i~---~~~~~~~~~~~~f 282 (563) T protein:vir:95 236 -----------------------------TSRE-LAMGIRNPRTELSSSGYGLSEVEIAMKEFI---AYNNTESFNDRFF 282 (563) T ss_pred -----------------------------cCcc-eEEEeccCCCCcccCcccchHHHHHHHHHH---HHHHHHHHHHHHH Confidence 0000 1456666532 335678777665544443 333333333333 Q ss_pred --hCCceEE--eccCCCcCCC-Cc--cccee------cCCCee-EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 295 --GGLGFYA--TDSAPPRDSR-GN--MVPWT------ISPLGM-VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTK 360 (527) Q Consensus 295 --~g~P~~~--~~g~~~~d~~-G~--~~p~~------v~pg~~-~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs 360 (527) .|.|-.. ..+....+.. -+ ...|. -+.|.+ +-++++-+|..++..+.-..|.+..+...+.|+..= T Consensus 283 ~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~af 362 (563) T protein:vir:95 283 SHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALY 362 (563) T ss_pred HccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHh Confidence 4556433 3343222210 00 11121 123443 447888899999987777789999999999999999 Q ss_pred cCchhhccccccccc----------ccHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc Q lcl|Aclame:pro 361 GIPDIAVGVVDAAVA----------ESGI------ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGID 424 (527) Q Consensus 361 ~tP~va~G~~d~s~a----------~SG~------ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~ 424 (527) ++|++-+|-.+.++. .|.+ -++-.+.|++.. |++.+ -..+++.|. T Consensus 363 gVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~-----------ie~~l---n~~L~~~~~----- 423 (563) T protein:vir:95 363 GIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRF-----------IEDLV---NRHIISEYG----- 423 (563) T ss_pred CCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHH-----------HHHHH---Hhhhchhcc----- Confidence 999999995543211 0111 122333443331 22221 111222211 Q ss_pred ccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH-HH-HHHH--------H-HHHHHH Q lcl|Aclame:pro 425 DADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE-DF-RQAT--------E-DKKTQG 493 (527) Q Consensus 425 ~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~-~~-~~~~--------e-~~a~~a 493 (527) .. ..+.|-..-+.++.+ +.++.++..+|+++.-++.+++ |.+|-+. |. -.-. + ...... T Consensus 424 ---~~--~~~~f~r~D~~~~~e-~~~~~~~~~~G~lT~NE~R~~~----gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~ 493 (563) T protein:vir:95 424 ---DK--YTFQFVGGDTKSATD-KLNILKLETQIFKTVNEAREEQ----GKKPIEGGDIILDASFLQGTAQLQQDKQYND 493 (563) T ss_pred ---cc--cEEEeccCCHHHHHH-HHHHHHHhcCCccCHHHHHHHh----CCCCCCCcceeecccccccccccccccCCCc Confidence 11 233454444434333 3356678899999999999876 4444321 10 0000 0 000000 Q ss_pred HHHHHhcCcccccccccCCCC--------cccccccCCCCCC Q lcl|Aclame:pro 494 IAQAEAADPFGAQMAAEQGIP--------DEEDDQALNGQPL 527 (527) Q Consensus 494 ~~~~aa~d~~g~~~~~d~g~~--------d~~~~~~~~~~~~ 527 (527) .++.+..++.-....++.+.| ..++.+++-..++ T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (563) T protein:vir:95 494 GKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQI 535 (563) T ss_pred cccchhhhhcccccCCCCCCCCCCCCCCCCCCcccccccccc Confidence 000000000000000111111 1111111111222 No 206 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=94.95 E-value=0.0031 Score=34.32 Aligned_cols=413 Identities=14% Similarity=0.128 Sum_probs=162.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCC------CC-ChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPN------AV-TDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKL 73 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~------~v-~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~ 73 (527) =..+++|=+.+++|....+...+ .+ +..+... ++..|-+|.--.-.+-.+.. +...| |..+ T Consensus 48 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~l~~~~~n~i~~~~I~t~~~----~vA~~---~~~~ 115 (563) T protein:vir:99 48 KSLYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHD-----VLKKFGNNPILNAIILTRSN----QVAMY---CQPA 115 (563) T ss_pred hhhccCCCcchhhhHhhhcccccccccccCCCCcccHHH-----HHHHhhcchHHHHHHHHHHH----HHHHH---hhhh Confidence 12244554455566544332212 11 1122211 12222222100000000000 00000 0000 Q ss_pred HHhhhhhhccCcccccc---Cc-c-hh--HHHHHHHHHHhc---------CchhhHHHHhHhhhhcccEEEEEEecCCCC Q lcl|Aclame:pro 74 IEAKMRFLGQGLKWEFS---KK-D-AK--VDDAIRVLFDRE---------NWEQKFESLKRWTEIRGDYVLLLIGDDEKD 137 (527) Q Consensus 74 v~~~~~~Lg~~~~~~i~---~~-~-~~--v~~~lr~w~~~e---------~l~~k~~~~~r~a~~~GDav~~i~~d~~k~ 137 (527) ..+--|.+++..+. .. . +. ....|..+.... .+..-+.......++.|-|++.+.+.-.. T Consensus 116 ---~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~- 191 (563) T protein:vir:99 116 ---RYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNN- 191 (563) T ss_pred ---hhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecC- Confidence 00000122221110 00 0 11 111222222111 11122334566677789888766554221 Q ss_pred CccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccc Q lcl|Aclame:pro 138 EGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPG 217 (527) Q Consensus 138 ~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g 217 (527) .|+-+.+..+||+.+.+..++++.- . .+.+.|..... | ....+ + T Consensus 192 ~G~~~~L~pl~p~~V~v~~~~~g~~--~--------------------~~~~~y~~~~~--g------~~~~~---~--- 235 (563) T protein:vir:99 192 KTKLEKFIAVDPSTIFYATDKKGKI--I--------------------KGGKRFVQVVD--K------RVVAS---F--- 235 (563) T ss_pred CCceEEEEEeCCceeEEEECCCCce--e--------------------ccceeEEEEeC--C------ceeEE---e--- Confidence 3445567889999999987776321 0 01111211110 1 00000 0 Q ss_pred cccccccccccccceeeeccCcccccccccccccceEeeCCCCC--CCCccCCccccchHHHHHHHHhhHHHHHHHHHH- Q lcl|Aclame:pro 218 KWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPI--MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF- 294 (527) Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~--~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~- 294 (527) +.+- -|+|+.|... ....+|.|-|+-+...+. ..+.-......| T Consensus 236 -----------------------------~~~e-vI~~~~~~~~d~~~~~~G~Spi~~a~~~i~---~~~~~~~~~~~~f 282 (563) T protein:vir:99 236 -----------------------------TSRE-LAMGIRNPRTELSSSGYGLSEVEIAMKEFI---AYNNTESFNDRFF 282 (563) T ss_pred -----------------------------cCcc-eEEEeccCCCCcccCcccchHHHHHHHHHH---HHHHHHHHHHHHH Confidence 0000 1456666532 335678777665544443 333333333333 Q ss_pred --hCCceEE--eccCCCcCCC-Cc--cccee------cCCCee-EecCCCCceEEeccccChHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 295 --GGLGFYA--TDSAPPRDSR-GN--MVPWT------ISPLGM-VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTK 360 (527) Q Consensus 295 --~g~P~~~--~~g~~~~d~~-G~--~~p~~------v~pg~~-~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs 360 (527) .|.|-.. ..+....+.. -+ ...|. -+.|.+ +-++++-+|..++..+.-..|.+..+...+.|+..= T Consensus 283 ~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~af 362 (563) T protein:vir:99 283 SHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINIISALY 362 (563) T ss_pred HccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHh Confidence 4556433 3343222210 00 11121 123443 447888899999987777789999999999999999 Q ss_pred cCchhhccccccccc----------ccHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc Q lcl|Aclame:pro 361 GIPDIAVGVVDAAVA----------ESGI------ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGID 424 (527) Q Consensus 361 ~tP~va~G~~d~s~a----------~SG~------ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~ 424 (527) ++|++-+|-.+.++. .|.+ -++-.+.|++.. |++.+ -..+++.|. T Consensus 363 gVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~-----------ie~~l---n~~L~~~~~----- 423 (563) T protein:vir:99 363 GIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRF-----------IEDLV---NRHIISEYG----- 423 (563) T ss_pred CCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHH-----------HHHHH---Hhhhchhcc----- Confidence 999999995543211 0111 122333443331 22221 111222211 Q ss_pred ccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH-HH-HHHH--------H-HHHHHH Q lcl|Aclame:pro 425 DADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE-DF-RQAT--------E-DKKTQG 493 (527) Q Consensus 425 ~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~-~~-~~~~--------e-~~a~~a 493 (527) .. ..+.|-..-+.++.+ +.++.++..+|+++.-++.+++ |.+|-+. |. -.-. + ...... T Consensus 424 ---~~--~~~~f~r~D~~~~~e-~~~~~~~~~~G~lT~NE~R~~~----gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~ 493 (563) T protein:vir:99 424 ---DK--YTFQFVGGDTKSATD-KLNILKLETQIFKTVNEAREEQ----GKKPIEGGDIILDASFLQGTAQLQQDKQYND 493 (563) T ss_pred ---cc--cEEEeccCCHHHHHH-HHHHHHHhcCCccCHHHHHHHh----CCCCCCCcceeecccccccccccccccCCCc Confidence 11 233454444434333 3356678899999999999876 4444321 10 0000 0 000000 Q ss_pred HHHHHhcCcccccccccCCCC--------cccccccCCCCCC Q lcl|Aclame:pro 494 IAQAEAADPFGAQMAAEQGIP--------DEEDDQALNGQPL 527 (527) Q Consensus 494 ~~~~aa~d~~g~~~~~d~g~~--------d~~~~~~~~~~~~ 527 (527) .++.+..++.-....++.+.| ..++.+++-..++ T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (563) T protein:vir:99 494 GKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQI 535 (563) T ss_pred cccchhhhhcccccCCCCCCCCCCCCCCCCCCcccccccccc Confidence 000000000000000111111 1111111111222 No 207 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=94.82 E-value=0.0034 Score=34.10 Aligned_cols=386 Identities=12% Similarity=0.074 Sum_probs=175.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC--hhheEeeecCCcccccccccCCchhHHHHhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN--TSDYQVILRGGDEGDQRPIYVPNGEKLIEAKM 78 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~--~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~ 78 (527) |-+. .++.+... .. ...+..+.+.+... ++.-..|- .+.+-....++ +|-.+|-..+ T Consensus 1 ~~f~--------~~f~r~~~-~~---------~~~~~~~~~~~~~~~~~~~g~~v~-~~~~l~~~~v~--~~i~~Ia~~i 59 (413) T protein:vir:48 1 MFFS--------GLFQRKSD-AP---------VTTPAELAEAIGLSYDTYTGKRIS-SQRAMRLTAVY--SCVRVLAESV 59 (413) T ss_pred Cccc--------hhhccCcc-CC---------ccchHHHHHhhhcCcccccCceec-hhhhhccHHHH--HHHHHHHHhh Confidence 4432 12232221 01 11122222222211 11111110 11110111111 1222222222 Q ss_pred hhhccCccccccCcc------hhHHHHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 79 RFLGQGLKWEFSKKD------AKVDDAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 79 ~~Lg~~~~~~i~~~~------~~v~~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vd 148 (527) +-|-+.. +..+..+ ..+...|. .+-| |. .-........++.|.|+..++.+ + |+-+.+..++ T Consensus 60 A~~p~~~-~~~~~~~~~~~~~~~~~~lL~---~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~--~--g~~~~L~~l~ 131 (413) T protein:vir:48 60 GMLPCSL-YKISGTLKTRVVDERLHKLVS---AKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA--L--GEVVELLPID 131 (413) T ss_pred hhCceEE-EEecCCcceeecccHHHHHHH---hhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC--C--CcEEEEEEEc Confidence 2111100 1111111 11222222 1111 11 23444556667789998777765 2 3334566777 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |+.+=+..+++.. +. +.+..+ +|.. . + + T Consensus 132 ~~~v~~~~~~~~~--~~-----y~~~~~---------------------~g~~------~-~---~-------------- 159 (413) T protein:vir:48 132 PGCVEPKLNSQWQ--PV-----YQVTFP---------------------DGSV------D-V---L-------------- 159 (413) T ss_pred CceEEEEEcCCce--EE-----EEEEec---------------------CceE------E-E---E-------------- Confidence 7776655544311 10 001111 1100 0 0 0 Q ss_pred ccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCc Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR 308 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~ 308 (527) + .==|+|+++... +.++|.|-|+-+...++-.+....-......-.|.|-..++..... T Consensus 160 ----------------~----~~evih~~~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~ 218 (413) T protein:vir:48 160 ----------------T----QDEIWHVRTLTL-DGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKL 218 (413) T ss_pred ----------------c----cccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC Confidence 0 001578876543 4578988877776666655443333333333346664333222222 Q ss_pred CCC--Ccc-ccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHH Q lcl|Aclame:pro 309 DSR--GNM-VPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGI 379 (527) Q Consensus 309 d~~--G~~-~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ 379 (527) +.+ -+. ..|+ -+.|.++-++.+-++..++..++-..+.+..+...+.|+..=++|++-+|..+.++..+-- T Consensus 219 ~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e 298 (413) T protein:vir:48 219 TPDAYERLKKDFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIE 298 (413) T ss_pred CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHH Confidence 210 010 1111 1235566688888999998766666678888888999999999999999865433221111 Q ss_pred HH-----HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 380 AL-----DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLEL 454 (527) Q Consensus 380 AL-----ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l 454 (527) .. +-.+.|++. .+++. +-..++...+ .....+++.+...+-.|.++.++...++ T Consensus 299 ~~~~~f~~~~i~P~~~-----------~ie~~---l~~~L~~~~~-------~~~~~~~fd~~~l~~~d~~~~~~~~~~~ 357 (413) T protein:vir:48 299 ELGLGFINYSLVPYLT-----------RIEQR---INTGLVRESK-------QGKFYAKFNAGALLRGDMKSRFEAYATG 357 (413) T ss_pred HHHHHHHHHHHHHHHH-----------HHHHH---HHhhccCccc-------cCCeEEEEechhhhccCHHHHHHHHHHH Confidence 11 122222222 11111 1111221111 1223456666677777999999999999 Q ss_pred HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccc-cccccCCCCcccccccCCCC Q lcl|Aclame:pro 455 WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGA-QMAAEQGIPDEEDDQALNGQ 525 (527) Q Consensus 455 ~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~-~~~~d~g~~d~~~~~~~~~~ 525 (527) +++|+++.-++.+++ |.+|-+. -... .- -.+.... ++..+.|.+.++.|+.+..+ T Consensus 358 ~~~g~~T~NE~R~~~----g~~p~~g-gD~~---~~--------~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (413) T protein:vir:48 358 INWGIYSPNDCRDLE----DMNPRPG-GDVY---LT--------PMNMTTSPSAGDDNGKKKESGDADKTAS 413 (413) T ss_pred HhCCCcCHHHHHHHh----CCCCCCC-ccee---ec--------cccccccccccccCCCCCCCCCccccCC Confidence 999999999999876 4444321 1110 00 0111112 22344455566666666666 No 208 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=94.78 E-value=0.0035 Score=34.03 Aligned_cols=366 Identities=10% Similarity=0.040 Sum_probs=148.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |+.=.+ .-|.....- +.+...+.... .+..+ ......| -++.+-. . ..|.+++++ T Consensus 1 Mg~~~~-----~~~~~~~~~--~~~~~~~~~~~-------~~~~~-~~~~~~v-~~~~al~-----~----~~v~~~i~~ 55 (385) T protein:vir:10 1 MGLLTP-----RNFNKRKAK--NMVYPSNPAFF-------TTTVG-GMQLSYV-SALSALQ-----N----TNVYSVINR 55 (385) T ss_pred Cccccc-----hhccccccc--ccccccchhhh-------hhhcc-ccCcccc-CHHHhhc-----c----HHHHHHHHH Confidence 543211 000000000 11111111100 00000 0000000 0111000 0 123333333 Q ss_pred hcc---CccccccCcchhHHHHHHHHHHhcCch----hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEE Q lcl|Aclame:pro 81 LGQ---GLKWEFSKKDAKVDDAIRVLFDRENWE----QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYF 153 (527) Q Consensus 81 Lg~---~~~~~i~~~~~~v~~~lr~w~~~e~l~----~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~f 153 (527) +.- ..+.++ ........|+ +-|-. .-........++.|.|+..+..|+ ..+-.++|.++. T Consensus 56 ia~~ia~~p~~v--~~~~~~~ll~----~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~~-------~~~~p~~~~~v~ 122 (385) T protein:vir:10 56 IASDVASAHFKT--ENTATLNRLE----SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-------LEHIPNSDVQIN 122 (385) T ss_pred HHHHHhhCceee--eccchhhhhh----cCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc-------eeEeecCCceEE Confidence 311 112222 1222222232 22211 222334556667899988777652 112234444444 Q ss_pred EEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccccee Q lcl|Aclame:pro 154 PYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIK 233 (527) Q Consensus 154 p~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~ 233 (527) +..+.+. . .|...... +....+ T Consensus 123 ~~~~~~~--~--------------------------~~~~~~~~-------~~~~~~----------------------- 144 (385) T protein:vir:10 123 YLPGNMG--I--------------------------VYTVLESN-------DRPQMV----------------------- 144 (385) T ss_pred EEEcCCc--e--------------------------EEEEEEcC-------CceEEE----------------------- Confidence 3332220 0 01000000 000000 Q ss_pred eeccCcccccccccccccceEeeCCCCCC--CCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE--eccCCCcC Q lcl|Aclame:pro 234 KLSTLTEEEPLPEQITTLPVFHFRGHPIM--NAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA--TDSAPPRD 309 (527) Q Consensus 234 ~~~~~~~e~~l~~pi~~iPVV~~pN~~~~--~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~--~~g~~~~d 309 (527) ++ .=-|+||++..++ +...|.|-|+-+...++..+....-......-.+.|-.. ..+..-.+ T Consensus 145 ----------~~----~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~ 210 (385) T protein:vir:10 145 ----------LR----QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDG 210 (385) T ss_pred ----------Ec----cccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCH Confidence 00 1126899875433 344677766665555544433222222222224556433 33322111 Q ss_pred CCCc-c-ccee-----cCCCeeEecCCCCceEEeccccChHHH-HHHHHHHHHHHHHhhcCchhhcccccccccccHHHH Q lcl|Aclame:pro 310 SRGN-M-VPWT-----ISPLGMVEHGQNNKIYRVNGVASLEPS-QTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIAL 381 (527) Q Consensus 310 ~~G~-~-~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~-~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~AL 381 (527) ..=+ . .-|+ -.-|.++-++++-++..+...++-..+ .+..+...+.|+.+-++|.+-+|..+.++. ++..+ T Consensus 211 e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~-~~sn~ 289 (385) T protein:vir:10 211 KDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTES-QHSNI 289 (385) T ss_pred HHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCc-ccccH Confidence 1000 0 0011 123556668888899999876644444 477788889999999999999986543321 11122 Q ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCcc Q lcl|Aclame:pro 382 DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIP 461 (527) Q Consensus 382 ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls 461 (527) +-... ....+ .+ .+...+++. +-.. +.. . .+++.+...+..|.++.++...+++++|+++ T Consensus 290 eq~~~-~~~~~--l~-P~~~~ie~~---l~~~-------l~~-~-----~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T 349 (385) T protein:vir:10 290 DQIKA-TYLAN--LN-SYVNPIVDE---LRLK-------MNA-P-----DLELDIKDMLDVDDSALINQVSNLAKSGVLG 349 (385) T ss_pred HHHHH-HHHHH--HH-HHHHHHHHH---HHHh-------hCC-c-----eEEeechhhhccCHHHHHHHHHHHHhCCCcC Confidence 21111 00111 00 111112111 1111 111 1 2566677888889999999999999999999 Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC Q lcl|Aclame:pro 462 AKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP 514 (527) Q Consensus 462 ~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~ 514 (527) .-++.++| |-.+++.++..+. .. +....-+||+++. T Consensus 350 ~NE~R~~~---g~~p~p~~~~~~~-----~~---------~~~~~~~g~~~dn 385 (385) T protein:vir:10 350 AEQAQFIL---TRSGFLPDNLPEF-----KP---------LTTQVKGGDEGDN 385 (385) T ss_pred HHHHHHHh---CCCccCCCCCccc-----cC---------cccccCCCCCCCC Confidence 99999876 2112222221111 00 1111111211111 No 209 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=94.77 E-value=0.0035 Score=34.02 Aligned_cols=382 Identities=12% Similarity=0.066 Sum_probs=159.0 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhc-CChhheEeeecCCcccccccccCCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYL-TNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~-~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~ 79 (527) |+.-- .|+..... ..+.. -..+..++. +.......+ +... ..-.|.....|+.+++ T Consensus 1 Mg~f~-------~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~v~~~i~~ia~ 57 (406) T protein:vir:95 1 MGLFD-------RWRRTKRK--SKIRA--------DTGYVGLFMSGEDVSFLVP--GYVR----LSDNPEVRMAVHKIAD 57 (406) T ss_pred Ccchh-------hhcccccc--ccccc--------cchhhhhhccCcccCcccc--CHHH----HhhcHHHHHHHHHHHH Confidence 66541 12111111 00000 011222222 111111111 1110 0111222334444444 Q ss_pred hhccCccccc---cCcc-hhHH-HHHHHHHHhcCch----hhHHHHhHhhhhcccE-EE-EEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 80 FLGQGLKWEF---SKKD-AKVD-DAIRVLFDRENWE----QKFESLKRWTEIRGDY-VL-LLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 80 ~Lg~~~~~~i---~~~~-~~v~-~~lr~w~~~e~l~----~k~~~~~r~a~~~GDa-v~-~i~~d~~k~~~~r~~i~~vd 148 (527) -+. ..++.+ +..+ ..+. ...+.+-.+-|-. .-+.......++-|.| +| .+.++. ++ +-+.+..++ T Consensus 58 ~ia-~~~~~~~~~~~~~~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~-~g--~~~~l~~i~ 133 (406) T protein:vir:95 58 LIS-SMTIYLMQNTEDGDIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTA-DG--LIDELVPLT 133 (406) T ss_pred hhc-cCceEEEEecCCcceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECC-CC--cEEEEEEEc Confidence 331 223333 1111 1111 1223333333322 2233444555556776 33 455553 22 334566777 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |+.+-+..+.+. ++++|. | . + + T Consensus 134 ~~~v~~~~~~~~--------------------------~~~~~~------~------~---~---~-------------- 155 (406) T protein:vir:95 134 PSKVNFLDTPDG--------------------------YQVLYG------G------Q---T---F-------------- 155 (406) T ss_pred CceeEEEEcCCe--------------------------EEEEec------c------E---E---E-------------- Confidence 777665554431 111110 0 0 0 0 Q ss_pred ccceeeeccCcccccccccccccceEeeCCC-CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGH-PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~-~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) + .-=|+||+.. .+.+...|.|-++-+...++..+....-......-.+.|-..++-... T Consensus 156 ----------------~----~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~ 215 (406) T protein:vir:95 156 ----------------N----YDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAA 215 (406) T ss_pred ----------------c----hhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCC Confidence 0 0016788843 344566799987776666665544433333333445566444322222 Q ss_pred cCCCC-c--cccee------cCCCeeEecCCC-CceEEec-cccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccc Q lcl|Aclame:pro 308 RDSRG-N--MVPWT------ISPLGMVEHGQN-NKIYRVN-GVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAE 376 (527) Q Consensus 308 ~d~~G-~--~~p~~------v~pg~~~el~~~-~k~~~ld-~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~ 376 (527) .+++. + ...|. .+-|.+.-++.+ ..+..+. ..+.-.-+.+..+...+.|+..-++|++-+|.-+-++.. T Consensus 216 l~~e~~~~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~ 295 (406) T protein:vir:95 216 TAELSSEEGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGEFNRDE 295 (406) T ss_pred CCHHHHHHHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCchHHH Confidence 22110 0 00000 112322223333 3343332 223334566888888899999999999999832211110 Q ss_pred cHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 377 SGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWE 456 (527) Q Consensus 377 SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~ 456 (527) .-.-++-.+.|++ ..+++ .+-.+++ . ...+.+.+.+...+-.|.++.++...+|+. T Consensus 296 ~~~~~~~~l~P~~-----------~~ie~---~l~~~l~--------~--~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~ 351 (406) T protein:vir:95 296 YNNFINSTILPIA-----------KGIEQ---ELTRKLL--------I--SPDLYFKFNPRSLYAYDLKELAEVGSNMYV 351 (406) T ss_pred HHHHHHHHHHHHH-----------HHHHH---HHHHhcC--------C--CCCcEEEeechhhhcCCHHHHHHHHHHHHh Confidence 0001111111111 11111 1211111 1 122456777888888899999999999999 Q ss_pred cCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccC Q lcl|Aclame:pro 457 AGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQAL 522 (527) Q Consensus 457 aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~ 522 (527) +|+++..++.++| |.+|.+ .-.+. .-..... . .+..+.+....+|..++++++.+ T Consensus 352 ~G~~t~NE~R~~~----gl~p~~-~gd~~---~~~~n~~--~-~~~~~~~~~~k~g~~~~~~~~~~ 406 (406) T protein:vir:95 352 RGIMEGNEVRDWL----GLSPKE-GLSEL---VILENYI--P-LDKIGDQSKLKGGDNSGADGQTD 406 (406) T ss_pred CCCcCHHHHHHHh----CCCCCC-Cccee---eeccCcc--c-hhhcccccccCCCCCCCCCCCCC Confidence 9999999999876 444432 21111 0000000 0 01111111122233333333333 No 210 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=94.74 E-value=0.0036 Score=33.97 Aligned_cols=375 Identities=13% Similarity=0.093 Sum_probs=161.7 Q ss_pred CC---CC----h--hhhhhhhHHhhcccC-----------------CC-CCCChHHHHHHHHHHHHHHHhcCChhheEee Q lcl|Aclame:pro 1 MG---QD----K--RQYGSTQQLRAGEAN-----------------FP-NAVTDFDKARLASYRLYEDMYLTNTSDYQVI 53 (527) Q Consensus 1 m~---~~----~--~qy~~~~~~~~~~~~-----------------~~-~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i 53 (527) |- |+ . -=+...+.++.|... +. ..|+...--|+.+..-|-++=.+.-.++-.. T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~ 80 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLD 80 (424) T ss_pred CCCCcceEeecCCCchHHHHHhhhcccccccccccccccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceE Confidence 10 00 0 001112222221110 00 0122222223333222332222222221111 Q ss_pred ecCCcccccccccCCchhHHHHhhhhhhccCccccccCcch--hH--HH-HHHHHHHhcC--ch--hhHHHHhHhhhhcc Q lcl|Aclame:pro 54 LRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDA--KV--DD-AIRVLFDREN--WE--QKFESLKRWTEIRG 124 (527) Q Consensus 54 ~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~--~v--~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~G 124 (527) + |..+..+. ++ .. ..+.+-.+-| +. .-........+..| T Consensus 81 ~--------------------------------~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~G 128 (424) T protein:vir:18 81 V--------------------------------FETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYG 128 (424) T ss_pred E--------------------------------EEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcC Confidence 1 11111110 00 00 1111111111 11 12234445667789 Q ss_pred cEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCC Q lcl|Aclame:pro 125 DYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPG 204 (527) Q Consensus 125 Dav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~ 204 (527) .|+..|.+|. .|+-+.+..++|..+-+..+.+ . +.|. +..+|.. T Consensus 129 nay~~i~r~~---~G~~~~L~pl~~~~V~v~~~~~---~-------------------------~~y~--~~~~g~~--- 172 (424) T protein:vir:18 129 NAYALVDRNS---AGDVISLLPLQSANMDVKLVGK---K-------------------------VVYR--YQRDSEY--- 172 (424) T ss_pred CeEEEEEECC---CCcEEEEEEecCcceEEEEcCC---e-------------------------EEEE--EEeCCeE--- Confidence 9988888874 2444567777777664433221 0 0110 0000100 Q ss_pred ccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhh Q lcl|Aclame:pro 205 GAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQT 284 (527) Q Consensus 205 g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~ 284 (527) .+ ++ .=-|+||++... +...|.|-|+-+. ++|... T Consensus 173 ----~~---------------------------------~~----~~eIih~r~~~~-dg~~G~spi~~~~---~~i~~~ 207 (424) T protein:vir:18 173 ----AD---------------------------------FS----QKEIFHLKGFGF-TGLVGLSPIAFAC---KSAGVA 207 (424) T ss_pred ----EE---------------------------------ec----cccEEEecCcCC-CCcccccHHHHHH---HHHHHH Confidence 00 00 012688887643 4577887665544 444333 Q ss_pred HHHHHHHHHH---hCCceEEecc-CCCcCCCC--cc-ccee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHH Q lcl|Aclame:pro 285 MTDEDLIMVF---GGLGFYATDS-APPRDSRG--NM-VPWT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKA 352 (527) Q Consensus 285 lsd~~~i~~~---~g~P~~~~~g-~~~~d~~G--~~-~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L 352 (527) +.-...+..+ .+.|-.+++- ....+++- +. .-|+ ..-|.+.-|+++-+|..++..++-..+.+..+.. T Consensus 208 ~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~ 287 (424) T protein:vir:18 208 VAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQ 287 (424) T ss_pred HHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHH Confidence 3333333333 4456333321 11112110 00 0111 1235566688888999999877777788888999 Q ss_pred HHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeE Q lcl|Aclame:pro 353 EEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTV 432 (527) Q Consensus 353 ~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v 432 (527) .+.|+..=++|++-+|-.+.++. .|..++-+..-++..+-. .+...+++. +-..+++.. ......+ T Consensus 288 ~~~Ia~~fgVPp~~lg~~~~~t~-~~sn~eq~~~~f~~~tl~---P~~~~ie~~---l~~~L~~~~-------~~~~~~~ 353 (424) T protein:vir:18 288 VSELARFFGVPPHLVGDVEKSTS-WGSGIEQQNLGFLQYTLQ---PYISRWENS---IQRWLIPAK-------DVGRIHA 353 (424) T ss_pred HHHHHHHhCCCHHHhCCCCCccc-ccccHHHHHHHHHHHHHH---HHHHHHHHH---HHhhcCCcc-------ccCCeEE Confidence 99999999999999996654321 122222111111110000 011112221 111122221 1122446 Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccc-cccccC Q lcl|Aclame:pro 433 TITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGA-QMAAEQ 511 (527) Q Consensus 433 ~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~-~~~~d~ 511 (527) ++.+...+..|.++.++...++.++|+++.-++.++| |.+|-+. -.+ ........ .+ +..+. +--.|+ T Consensus 354 ~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~----gl~pi~g-GD~---~~~~~n~~--~l-~~~~~~~~p~~~ 422 (424) T protein:vir:18 354 EHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTD----NLPPLPG-GDV---AMRQSQYV--PI-TDLGTNKEPRNN 422 (424) T ss_pred EEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCCC-cCe---eeeccCcc--ch-HhhhccCCCccC Confidence 6777888899999999999999999999999999876 4454322 111 00000000 00 00010 011222 Q ss_pred CC Q lcl|Aclame:pro 512 GI 513 (527) Q Consensus 512 g~ 513 (527) |. T Consensus 423 ga 424 (424) T protein:vir:18 423 GA 424 (424) T ss_pred CC Confidence 22 No 211 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=94.65 E-value=0.0039 Score=33.82 Aligned_cols=414 Identities=14% Similarity=0.136 Sum_probs=163.0 Q ss_pred CCCChhhhhh----hhHHhhcccCCCCCCC-hHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQYGS----TQQLRAGEANFPNAVT-DFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~~~~qy~~----~~~~~~~~~~~~~~v~-~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~ 75 (527) +.+++--|+. ..||++.-...++... +-.-..+..++.+..=|.+++.=.+.| +.|-+ T Consensus 43 ~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I-----------------~~ia~ 105 (576) T protein:vir:96 43 KELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAII-----------------LTRSN 105 (576) T ss_pred hhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHH-----------------HHHHH Confidence 2222222222 3344332233222221 111111111212222222232221111 12222 Q ss_pred hhhhhh--------ccCccccccCcc-----hhH--HHHHHHHHH-----hc----CchhhHHHHhHhhhhcccEEEEEE Q lcl|Aclame:pro 76 AKMRFL--------GQGLKWEFSKKD-----AKV--DDAIRVLFD-----RE----NWEQKFESLKRWTEIRGDYVLLLI 131 (527) Q Consensus 76 ~~~~~L--------g~~~~~~i~~~~-----~~v--~~~lr~w~~-----~e----~l~~k~~~~~r~a~~~GDav~~i~ 131 (527) .++.|. |+++........ +.. ...+..++. ++ .+..-+.......++.|.|++.+. T Consensus 106 ~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~ 185 (576) T protein:vir:96 106 QVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKV 185 (576) T ss_pred HHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEE Confidence 222221 122222111111 111 011111111 11 111233445556778899988888 Q ss_pred ecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeee Q lcl|Aclame:pro 132 GDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTE 211 (527) Q Consensus 132 ~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~ 211 (527) ++.. +.|+-+.+..+||..+.+..++++.- +.. ...|.... .+.+..+. T Consensus 186 ~~rd-~~g~~~~L~pl~p~~V~v~~~~dg~~-~~~---------------------~~~~~~~~--------~~~~~~~~ 234 (576) T protein:vir:96 186 FNKK-NATTMDKFIAVDPSTIFYATDKNGKI-IKG---------------------GKRFVQVI--------NKKVVASF 234 (576) T ss_pred EecC-CCCceEEEEEeCCceeEEEECCCCce-eee---------------------eeEEEEec--------CCceEEEe Confidence 7732 23455567889999998887776321 000 00111000 01100000 Q ss_pred cccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCC--CCccCCccccchHHHHHHHHhhHHHHH Q lcl|Aclame:pro 212 ELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIM--NAMFGRSGLAGLESLIASVNQTMTDED 289 (527) Q Consensus 212 ~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~--~~~wG~S~Ledl~~l~deLn~~lsd~~ 289 (527) +.+-| |+|+.|...+ ...+|.|-|+-+...+...+..-.-.. T Consensus 235 -----------------------------------~~~di-i~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~ 278 (576) T protein:vir:96 235 -----------------------------------TSREM-AMGIRNPRTELSSSGYGLSEVEIAMKQFIAYNNTETFND 278 (576) T ss_pred -----------------------------------cccce-EEEeecCCCCcccCcccccHHHHHHHHHHHHHHHHHHHH Confidence 00011 4455554332 356687777665555544433322222 Q ss_pred HHHHHhCCceEE--eccCCCcCCC-Cc--cccee------cCCCee-EecCCCCceEEeccccChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 290 LIMVFGGLGFYA--TDSAPPRDSR-GN--MVPWT------ISPLGM-VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQ 357 (527) Q Consensus 290 ~i~~~~g~P~~~--~~g~~~~d~~-G~--~~p~~------v~pg~~-~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~ 357 (527) ....-.+.|-.+ ..+....+.+ =+ ...|. -+.|.+ .-++++-+|..+...+.-..+.+..+...+.|+ T Consensus 279 ~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia 358 (576) T protein:vir:96 279 RFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFEKWLTYLINIIS 358 (576) T ss_pred HHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhHHHHHHHHHhHHHHH Confidence 222224556433 3333222211 00 11121 122442 447888899999987788889999999999999 Q ss_pred HhhcCchhhccccccccc----c------cHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh Q lcl|Aclame:pro 358 QTKGIPDIAVGVVDAAVA----E------SGI------ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGV 421 (527) Q Consensus 358 ~vs~tP~va~G~~d~s~a----~------SG~------ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v 421 (527) ..=++|..-+|-.+.+.. . |.+ -++-.+.|++. .+++.+. ..+++.|. T Consensus 359 ~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~-----------~ie~~ln---~~Ll~~~~-- 422 (576) T protein:vir:96 359 ALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLR-----------FIEDLIN---THIISEYS-- 422 (576) T ss_pred HHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHH-----------HHHHHHH---hhhchhcc-- Confidence 999999999995543211 0 000 11122333322 1222211 11222211 Q ss_pred cccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH-HH-------HHHHHHH--HH Q lcl|Aclame:pro 422 GIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE-DF-------RQATEDK--KT 491 (527) Q Consensus 422 ~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~-~~-------~~~~e~~--a~ 491 (527) .. ..+.|...-+.++.+.. ++.++..+|+++.-++.+++ |.+|-+. |. +....-. .. T Consensus 423 ------~~--~~~~f~r~d~~~~~e~~-~~~~~~~~G~lT~NE~R~~~----gl~piegGD~~~~~~~~~~~~~~~~~~~ 489 (576) T protein:vir:96 423 ------DK--YVFQFVGGDTKSELDKI-KILQEEVKTYKTVNEARKEK----GLKPIEGGDVLLDGSFIQSMSLNTQKEQ 489 (576) T ss_pred ------Cc--eEEEeccCCHHHHHHHH-HHHHHHhcCccCHHHHHHHh----CCCCCCCcceeccccccccccccccCCC Confidence 11 23345555444443333 44556678999999998876 4444321 10 0000000 00 Q ss_pred -HHHHHHHhcCcccccccccCCC-Ccc-----------cccccCCCCCC Q lcl|Aclame:pro 492 -QGIAQAEAADPFGAQMAAEQGI-PDE-----------EDDQALNGQPL 527 (527) Q Consensus 492 -~a~~~~aa~d~~g~~~~~d~g~-~d~-----------~~~~~~~~~~~ 527 (527) ....+.+..++.-....++.+. |.. ..|......++ T Consensus 490 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~~~~~~~ 538 (576) T protein:vir:96 490 YEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESNDPTKIDSPV 538 (576) T ss_pred CCCccccccccccccccCCCCCCCCCCCCCCCcccccccccCCCCCCcc Confidence 0000000011111000111100 001 11111111111 No 212 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=94.65 E-value=0.0039 Score=33.82 Aligned_cols=432 Identities=12% Similarity=0.104 Sum_probs=182.6 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC----hhheEeeecCCcccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN----TSDYQVILRGGDEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~----~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~ 76 (527) =.|++.|=-+++.=++.... .|+-| .||.++ -.-|+.+ .|.+.| +|.+++ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------------~~~~l-~~~~~~~F~Gy~~la~l-------aQ~~ey----r~~~~~ 131 (698) T protein:vir:10 78 SNYTPRERRAASYALDFNGT--------------SMDAL-SFVTSSGFPGFPTLVLL-------AQLPEY----RAMHEV 131 (698) T ss_pred ccCCccccchhhhhhccccc--------------ccccc-hhhhccCcchHHHHHHH-------hhccch----hhHHHH Confidence 23333333333322222111 11122 244443 1111111 133333 566666 Q ss_pred hhhhhcc------------------CccccccCcch-hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEE--EEEEecCC Q lcl|Aclame:pro 77 KMRFLGQ------------------GLKWEFSKKDA-KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYV--LLLIGDDE 135 (527) Q Consensus 77 ~~~~Lg~------------------~~~~~i~~~~~-~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav--~~i~~d~~ 135 (527) ++..+=. ..+-++....+ +--+.|..=+++=++-.++..+-+|+=.-|=++ |.|..|+. T Consensus 132 ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~ 211 (698) T protein:vir:10 132 LADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ 211 (698) T ss_pred HHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCcc Confidence 6555511 00111111111 223455555555556678888888888888885 45666542 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEE-eeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccc Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVD-EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELY 214 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~-~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~ 214 (527) .- ..|- ..+|..+ ..|.+.++.-.+ -|..|+... +. .| .+.= .+ T Consensus 212 ~l--~~PL--~~~~~~I-------~kGslKGL~ViDp~~vtP~~~n----------~~-------dP--~spd-----fg 256 (698) T protein:vir:10 212 IM--DTPL--VPRPYTV-------PKGSFQGLRVVEPYWVTPNNYN----------SI-------NP--VADD-----FY 256 (698) T ss_pred cc--cccc--ccccccc-------cCccceeeeeecccccccchhh----------hc-------cc--hhhc-----cC Confidence 10 0110 0011111 112344443222 133332100 00 00 0000 12 Q ss_pred ccccccccccccccccceeeeccCcccccccccccccceEeeCC-CCCCCCccCCccccchHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 215 EPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRG-HPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMV 293 (527) Q Consensus 215 ~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN-~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~ 293 (527) .+..|.-. ...++.-++.... .. .+|. ..+...+||.|-++-+.+-++.-.++.....-++. T Consensus 257 kP~~y~V~-G~~IH~SRL~~~v--------g~--------pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~ 319 (698) T protein:vir:10 257 KPSTWWMI-GSEVHATRLHTIV--------SR--------PVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVK 319 (698) T ss_pred CCceEEEe-cceecceeEEEec--------CC--------CchhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHH Confidence 22223211 1112222221110 00 1122 12446689999988877766665444433333332 Q ss_pred HhCCceEEeccCCCcCCCCcc---------cceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCc Q lcl|Aclame:pro 294 FGGLGFYATDSAPPRDSRGNM---------VPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIP 363 (527) Q Consensus 294 ~~g~P~~~~~g~~~~d~~G~~---------~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP 363 (527) ......+.+.........|+. .-++..-|++. ++ .+-+|.+.+. .++++-+-+...+.+++..|++| T Consensus 320 ~~~~~~l~~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~l-lDk~~Eefeq~st--~lSGLddVi~qf~q~VAgaa~IP 396 (698) T protein:vir:10 320 QFSVSGILMDLAQALTPGANVDLSMRAELINRYRDNRNILF-LDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHIP 396 (698) T ss_pred HhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCccceEE-EecCCcceEEEec--CcCCHHHHHHHHHHHHHhhhcCc Confidence 211111111111111111110 01233345544 45 5788888885 89999999999999999999999 Q ss_pred hh-hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCC Q lcl|Aclame:pro 364 DI-AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPV 442 (527) Q Consensus 364 ~v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~ 442 (527) .+ -||+--.+-..||-.=.-.|=-.+...|+.+ +...+++++ +++.+. . ++..+. ...+.|++.--- T Consensus 397 ltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~--L~p~L~rl~-~ii~rS------~-~G~idp--~i~~~fnPL~qm 464 (698) T protein:vir:10 397 LIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA--LQQLMNDVI-VMIQLS------L-FGAVDP--SIKWQWNALREL 464 (698) T ss_pred hhhhhccCCcccCccchhhHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHH------h-cCCCCC--cceEEeCCCCCc Confidence 94 5664332222244444444444444444444 334454432 232211 1 222222 356789977666 Q ss_pred CHHHHHHH-------HHHHHhcCCccHHHHHHHHHHh--cCCC-----------CchHHHHHHHHHHHHHHH--HHHHhc Q lcl|Aclame:pro 443 NNEKRFAQ-------LLELWEAGLIPAKKLTEELSKI--MGFE-----------LTEEDFRQATEDKKTQGI--AQAEAA 500 (527) Q Consensus 443 D~~~~i~~-------~v~l~~aGlls~~ta~~~L~~~--g~~~-----------~~e~~~~~~~e~~a~~a~--~~~aa~ 500 (527) +.++.++- -+.+...|+|+.++..++|.+- ++|. +.+++++.++.-....++ ...+.. T Consensus 465 td~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (698) T protein:vir:10 465 DDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPT 544 (698) T ss_pred CHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHHHhhhcCCcCCCCccccc Confidence 65554442 2456688999999999999653 3321 011111111100000000 000001 Q ss_pred CcccccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 501 DPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 501 d~~g~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) ++.|+..++ |.|-.+..-..|..|- T Consensus 545 ~~~~~~~~~--~~~~~~~~~~~~~~~~ 569 (698) T protein:vir:10 545 APGGARAGA--TAPPAAANVNANANPR 569 (698) T ss_pred ccccccCCC--CCCcccccccCCCCcc Confidence 111111111 2233333333333332 No 213 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=94.45 E-value=0.0044 Score=33.51 Aligned_cols=341 Identities=11% Similarity=0.047 Sum_probs=139.8 Q ss_pred CCCCChHHHHHHHHHHHHHHHh-cCChhheEeeecCCcccccccccCCchhHHHHhhhhhhccCccccccCcchhHHHHH Q lcl|Aclame:pro 22 PNAVTDFDKARLASYRLYEDMY-LTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAI 100 (527) Q Consensus 22 ~~~v~~~d~~Rl~aY~~~~~~y-~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~l 100 (527) |+|.....++-...++-+..+. .+..+..-..+-...+ .-. ..|-++++++.-..+...=+.+ ..+ T Consensus 1 M~~~~~f~~r~~~~~~~~~~~~~~~~~~~~~~~v~~~~a-----l~~----~av~~cv~~ia~~ia~~p~~~~----~~~ 67 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYYPFMVQNGSIVPNSLVDATEA-----LKN----SDLYAVTSLISSDIAGTRFIGN----QVF 67 (359) T ss_pred CcccchhhccccCCCCcchhhhhccccccCCcccCHHHh-----hcc----hHHHHHHHHHHHhhhcCccccc----hHH Confidence 5555544332111111111111 1111110000000000 000 1233444444211111100111 122 Q ss_pred HHHHHhcCchhh----HHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCC Q lcl|Aclame:pro 101 RVLFDRENWEQK----FESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHP 176 (527) Q Consensus 101 r~w~~~e~l~~k----~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~p 176 (527) +.+..+-|=.+. ........++.|.|+..|..|. .|+-+.+..++|..+-+..+++ .+ T Consensus 68 ~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~---~g~~~~l~~l~~~~v~i~~~~~---~~------------ 129 (359) T protein:vir:10 68 TSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGD---NSLMKELRLIPSNAITIDLTDD---TL------------ 129 (359) T ss_pred HHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECC---CCeEEEEEEeCCceEEEEEcCC---eE------------ Confidence 222233331122 2344455566799977777774 2334456666666654433321 00 Q ss_pred CCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEee Q lcl|Aclame:pro 177 DSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHF 256 (527) Q Consensus 177 d~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~ 256 (527) .|.-...+.| ...+ + + .==|+|| T Consensus 130 -------------~y~~~~~~~~-------~~~~---~------------------------------~----~~evih~ 152 (359) T protein:vir:10 130 -------------TYEVNQFDDY-------PSAK---Y------------------------------N----ASEMIHV 152 (359) T ss_pred -------------EEEEEecCCc-------eEEE---E------------------------------c----ccceEEe Confidence 0100000000 0000 0 0 0014677 Q ss_pred CCCCC----CCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEec--cCCCcCCC-Ccc-ccee-----cCCCe Q lcl|Aclame:pro 257 RGHPI----MNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATD--SAPPRDSR-GNM-VPWT-----ISPLG 323 (527) Q Consensus 257 pN~~~----~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~--g~~~~d~~-G~~-~p~~-----v~pg~ 323 (527) ++... .+...|.|-|+-+...+......-.-......-.+.|-..++ .....++. -+. ..|+ -+-|. T Consensus 153 ~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~n~g~ 232 (359) T protein:vir:10 153 KIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANGGNNSGR 232 (359) T ss_pred ccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCccccCC Confidence 64322 234456665554444443332222222222222345643332 22111100 000 0111 11245 Q ss_pred eEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 324 MVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVL 403 (527) Q Consensus 324 ~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~ 403 (527) +.=|+++-++..++..+.-..+.+..+...+.|+.+=++|.+-+|..+.+.. +.-.++-.+.-.+..+-. .+...+ T Consensus 233 ~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~-~~~~~e~~~~~~l~~~l~---p~~~~l 308 (359) T protein:vir:10 233 VMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQS-SLDQIKDLYVNALNRFIE---PLISEL 308 (359) T ss_pred ceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccc-cHHHHHHHHHHHHHHHHH---HHHHHH Confidence 5557888899999876666668888899999999999999999985543221 222222111100000000 000111 Q ss_pred HHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH Q lcl|Aclame:pro 404 KQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE 480 (527) Q Consensus 404 ~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~ 480 (527) ++. +. ..+.... +..+=-|.+.....+.+++++|+++.-++.++| +.+| +- T Consensus 309 ~~~---l~-------~~~~~~~-----------~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l----~~~p-v~ 359 (359) T protein:vir:10 309 RIK---CD-------SSIGVDM-----------SPITDYSNSVFKADILNWVKEGIIEPTEAKTLL----ESKG-II 359 (359) T ss_pred HHH---hh-------hhhcccc-----------hhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCC-CC Confidence 110 10 1111111 111111345556678889999999999999987 4333 33 No 214 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=93.93 E-value=0.0059 Score=32.80 Aligned_cols=369 Identities=13% Similarity=0.070 Sum_probs=159.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |++-.|--... ......+ .......+.+. ...|..-......-.|.....|+.+++- T Consensus 1 Mg~f~~~~~~~-------~~~~~~~----------~~~~~~~~~~~------~~~~~~v~~~~~l~~~~v~~~i~~ia~~ 57 (382) T protein:vir:48 1 MPIFNLATESP-------PDNQGGF----------FDVVDSDFLAS------LKGNEWVSAETALRNSDLFSIINQLSND 57 (382) T ss_pred CccccccccCC-------ccccccc----------ccchhhhcccc------ccCCcccchHhhhccHHHHHHHHHHHHh Confidence 66554321110 0000000 01111111110 0001000000000001111222222222 Q ss_pred hccCccccccCcchhHHHHHHHHHHhcC---chhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEec Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLFDREN---WEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYED 157 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~~~e~---l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d 157 (527) ++ ..+..+....+ +..++. .+. ...-........++.|.|+..+..|. .|+-+.+..++|..+=+..+ T Consensus 58 ia-~~~~~~~~~~~--~~L~~~---PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~---~G~~~~l~~i~~~~v~v~~~ 128 (382) T protein:vir:48 58 LA-TVKLITSRKKL--QGIVDN---PSNNANRFNFYQSIFAQMLLGGEAFAYRWRNE---NGRDMKWEYLRPSQVSFNRL 128 (382) T ss_pred hc-cCceeeecchh--hhhhhh---cCCCCCHHHHHHHHHHHhhhcCCEEEEEEECC---CCcEEEEEEEcCceeEEEEc Confidence 21 11222221111 111111 111 11233345556677899988887763 23455677777777654443 Q ss_pred CCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeecc Q lcl|Aclame:pro 158 PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLST 237 (527) Q Consensus 158 ~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~ 237 (527) ++... + .++++. .+.+ .... ..+ T Consensus 129 ~~~~~--~--------------------~y~~~~----~~~~-----~~~~------------------------~~~-- 151 (382) T protein:vir:48 129 DNKDG--I--------------------YYNITF----DDPR-----IPPK------------------------QHV-- 151 (382) T ss_pred CCCCe--E--------------------EEEEEe----cCcc-----ccce------------------------eEE-- Confidence 33111 0 111110 0000 0000 000 Q ss_pred CcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE--eccCCCcCCCCcc- Q lcl|Aclame:pro 238 LTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA--TDSAPPRDSRGNM- 314 (527) Q Consensus 238 ~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~--~~g~~~~d~~G~~- 314 (527) + .==|+||++..+++..+|.|-|+-+...++-.+..-.-......-.+.|-.. +.+....+..-+. T Consensus 152 -------~----~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~ 220 (382) T protein:vir:48 152 -------P----QNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFKTKLS 220 (382) T ss_pred -------c----CccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHH Confidence 0 0118999987777778999987777766655433333333333345667433 3332211100000 Q ss_pred ---cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHH----HHHHhcc Q lcl|Aclame:pro 315 ---VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA----LDLKLSA 387 (527) Q Consensus 315 ---~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A----Lql~~~P 387 (527) .-..-+.|.++-++++.+|..+...+.-..+.+..+...+.|+..=++|+.-+|..+.+.. +.-+ ++-.+.| T Consensus 221 ~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~-~~~~~~~~~~~~l~p 299 (382) T protein:vir:48 221 RSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGDQQS-SLEMSSDLYSKAVSR 299 (382) T ss_pred HHHHhhccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc-HHHHHHHHHHHHHHH Confidence 0011235677778888999999977777778899999999999999999999984332211 1001 1111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHH Q lcl|Aclame:pro 388 ILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTE 467 (527) Q Consensus 388 Llakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~ 467 (527) ++ ..+++. +-..++..++ .. .+...-+ +......++.+|..+|++++-++.+ T Consensus 300 ~~-----------~~i~~~---l~~~l~~~~~---~~----------~~~~~~~-~~~~~~~~~~~l~~~g~~t~~e~r~ 351 (382) T protein:vir:48 300 YL-----------RPFLSE---LSQKLSCDVD---AD----------IFPAVDP-TGSNYISRINSLVKTGTLAQNQGLY 351 (382) T ss_pred HH-----------HHHHHH---HHHHhcChhh---hh----------hhhhhcc-chhHHHHHHHHHhhcCccCHHHHHH Confidence 11 111111 1111111110 00 0111112 3456666788899999999999999 Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccc Q lcl|Aclame:pro 468 ELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEED 518 (527) Q Consensus 468 ~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~ 518 (527) .|...|+ .+ +++.+. + +... .-.||.+++++ T Consensus 352 ~l~~~g~-~~--~~~~~~---------~-----~~~~---~~~GGd~~~~~ 382 (382) T protein:vir:48 352 ILQQAEI-LP--KELPNG---------E-----NPNS---TLKGGEEDGQD 382 (382) T ss_pred HHhhCCC-CC--cchhhh---------h-----cCCC---CCCCCCCCCCC Confidence 9988875 22 222211 0 1110 01223333222 No 215 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=93.88 E-value=0.0061 Score=32.74 Aligned_cols=398 Identities=8% Similarity=0.002 Sum_probs=159.0 Q ss_pred hhcccCCCCCCChHHHH-HHHH---------------------HHHHHHHhcCChhheEeeecCCcccccccccCCchhH Q lcl|Aclame:pro 15 RAGEANFPNAVTDFDKA-RLAS---------------------YRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEK 72 (527) Q Consensus 15 ~~~~~~~~~~v~~~d~~-Rl~a---------------------Y~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k 72 (527) +-.| +..+++..+.+ ..+. +.-|++.+..++. ..- T Consensus 1 ~~~~--~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~pp~~~~~la~l~~~n~~---------------------v~s 57 (542) T protein:vir:41 1 MFNY--HLSIRSLEKYKAIKREEVESQALGETRFEEYVEPKVNPLVLLSLLQVNPY---------------------HAS 57 (542) T ss_pred Cccc--cccccccccchhhhhccccccccccccCCccccCCCCHHHHHHHHhhcHH---------------------HHH Confidence 0000 01122211111 1000 0011112211110 112 Q ss_pred HHHhhhhhhccCccccccCcchhHHHHHHHHHHhcCch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccc Q lcl|Aclame:pro 73 LIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDRENWE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPS 150 (527) Q Consensus 73 ~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~ 150 (527) .|+..+.-+ -+.++.+....++ .+..+.-..++. .-+.+..+..++.|.|+..+..|. + |+-+.+..++|. T Consensus 58 cI~~ia~~I-A~l~~~~~~~~~~---~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~-~--G~~~~L~~l~~~ 130 (542) T protein:vir:41 58 ACSIKANDI-IRTGYILEGDDEG---VVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDD-R--GDPIRFEYIPSH 130 (542) T ss_pred HHHHHHHHH-hhCceeeecccch---hhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-C--CcEEEEEEEcCc Confidence 333333333 2223333333332 122222222222 234556677788899988888775 2 345567889999 Q ss_pred eEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccc Q lcl|Aclame:pro 151 TYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPD 230 (527) Q Consensus 151 ~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~ 230 (527) ++....+++ .+..++ ..... +|.+.+...... +...|.+. T Consensus 131 ~v~v~~d~~---~~~~~~------~~~~~----------~~~~~y~~~~~~-----------~~~~g~~~---------- 170 (542) T protein:vir:41 131 TIRVHKDGS---RYRQTW------DGVNI----------THFKDYRYEGEI-----------NPETGEDQ---------- 170 (542) T ss_pred ceEEEEcCC---eeEeee------cCCcc----------eeEEeecccccc-----------cccccccc---------- Confidence 988776554 111111 11000 111111111000 00000000 Q ss_pred ceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc--eEEeccCCCc Q lcl|Aclame:pro 231 DIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG--FYATDSAPPR 308 (527) Q Consensus 231 ~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P--~~~~~g~~~~ 308 (527) ..++ .==|+||++..+....+|.|.+.-....+...+..-.-......-.+.| ++.+++.-.. T Consensus 171 -----------~~~~----~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~d 235 (542) T protein:vir:41 171 -----------DSVG----ANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFED 235 (542) T ss_pred -----------cccC----cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCcccc Confidence 0000 1127899988777888999987766554443322222222222223455 3444443221 Q ss_pred CC--CCccc---------cee-------cCCCeeEec------CCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 309 DS--RGNMV---------PWT-------ISPLGMVEH------GQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 309 d~--~G~~~---------p~~-------v~pg~~~el------~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) +. +.+.. .|. -..|.+.-+ .++-+|..+...+.-..|.+..+...+.|+..=++|+ T Consensus 236 e~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp 315 (542) T protein:vir:41 236 ELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDP 315 (542) T ss_pred ccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 11 11100 000 112322222 2344777887766677788999999999999999999 Q ss_pred hhccccccccc-ccHH------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeC Q lcl|Aclame:pro 365 IAVGVVDAAVA-ESGI------ALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFR 437 (527) Q Consensus 365 va~G~~d~s~a-~SG~------ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~ 437 (527) +-+|-++.++. -|.+ -++..+.|++. .+++.+.. .+++.+ ...+...+... T Consensus 316 ~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~-----------~ie~~ln~---~L~~~~--------~~~~~~~f~~~ 373 (542) T protein:vir:41 316 YRLGIADTGPLGGNFAEVTRRTYYESVVRPQQN-----------IISSILTD---FFQVKF--------NPKTRFKFNDE 373 (542) T ss_pred HHhCcCCCcccccccHHHHHHHHHHHHHHHHHH-----------HHHHHHHh---hccccc--------CCceEEEecch Confidence 99996643321 1111 11122222222 22222211 111111 11122333344 Q ss_pred CCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHH--HH---HHHHH-------HHHHHHHHhcCcccc Q lcl|Aclame:pro 438 DPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFR--QA---TEDKK-------TQGIAQAEAADPFGA 505 (527) Q Consensus 438 d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~--~~---~e~~a-------~~a~~~~aa~d~~g~ 505 (527) +.+..|+.+ ...+++++|+++..++.+.|. |.++ .++.- .. .+-.+ ....++.+-.+..+. T Consensus 374 ~ll~~d~~~---~~~~~v~~GilT~NE~Re~L~---g~~p-gdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~ 446 (542) T protein:vir:41 374 TLLESDSVR---NCALLVQSGVLTPAEARERLF---GLDG-GPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYR 446 (542) T ss_pred hhcchHHHH---HHHHHHhCCCCCHHHHHHhhC---CCCC-CCccccccccccccccccCCcCCCCCchhhhhhcccccC Confidence 556656444 456789999999999986662 2222 11110 00 00000 000000001111110 Q ss_pred ---cccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 506 ---QMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 506 ---~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +.-+..-++..+.. ..--.|. T Consensus 447 ~~~~~~~~~~~~~~~~~-~~~~~~~ 470 (542) T protein:vir:41 447 PRFNEIISSKLSAEEKK-KKIDESL 470 (542) T ss_pred ccccccccccccchhhc-ccccchh Confidence 00000111100000 0011111 No 216 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=93.35 E-value=0.0079 Score=32.12 Aligned_cols=387 Identities=12% Similarity=0.011 Sum_probs=166.0 Q ss_pred CCCC--------hhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhH Q lcl|Aclame:pro 1 MGQD--------KRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEK 72 (527) Q Consensus 1 m~~~--------~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k 72 (527) |-|- ..-+.-.+-|+.+...-.+.++.... +......+..|.. | -...+ .-.|.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-----v-s~~~a-----l~~~~v~~ 65 (424) T protein:vir:45 1 MLYCWWAHWLWPEGGRVLLDALFRSKSLENPSTPITGD----AVDTDGLFRADVY-----V-SPETA-----MKLAAVYS 65 (424) T ss_pred CeeEeeeceecCcchhHHHHhhccccCCCCCccccchh----hhhhhccccCCce-----e-chHHh-----hccHHHHH Confidence 4442 11222233334333221111211100 0000000000000 0 00111 00111112 Q ss_pred HHHhhhhhhccCccccc---cCcc-hhH-H-HHHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccce Q lcl|Aclame:pro 73 LIEAKMRFLGQGLKWEF---SKKD-AKV-D-DAIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) Q Consensus 73 ~v~~~~~~Lg~~~~~~i---~~~~-~~v-~-~~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~ 142 (527) .|+.+++-++ ..+..+ +.++ +++ + ...+-+-.+-| |. .-........++.|.|+..|..|. .|+-+ T Consensus 66 cv~~Ia~~iA-~lp~~v~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~---~G~~~ 141 (424) T protein:vir:45 66 CIYVLSSSLA-QMPLHVMRRHKGKVEPARDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNR---RGEVI 141 (424) T ss_pred HHHHHHHHHh-hCceEEEEecCCceeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcC---CCcEE Confidence 2232222221 112221 1111 111 1 11122212222 21 222345556777899998888874 23444 Q ss_pred EEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccc Q lcl|Aclame:pro 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) Q Consensus 143 ~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~ 222 (527) .+..++|+.+-...+.+ ++.|.-. ...|. T Consensus 142 ~L~~l~~~~v~i~~~~~----------------------------~~~y~~~-~~~~~---------------------- 170 (424) T protein:vir:45 142 SLDCCMPWETTLMNTGG----------------------------RYTYGLY-NEYGA---------------------- 170 (424) T ss_pred EEEEecCceEEEEEcCC----------------------------eEEEEEE-ecCce---------------------- Confidence 56666665553322111 1111100 00000 Q ss_pred ccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCce Q lcl|Aclame:pro 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLGF 299 (527) Q Consensus 223 ~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P~ 299 (527) .. ++ .==|+||++... +...|.|-++-+. ++|...+.-...+..+ .+.|- T Consensus 171 ----------~~---------~~----~~eVih~r~~~~-d~~~G~spi~~~~---~~i~~~~~~~~~~~~~f~ng~~p~ 223 (424) T protein:vir:45 171 ----------FA---------IS----PDDMIHIRALGN-NQKMGLSPIMQHA---ETIGMGMSGQKYTESFFSGNARPA 223 (424) T ss_pred ----------EE---------EC----cccEEEecCcCC-CCcccccHHHHHH---HHHHHHHHHHHHHHHHHhccCCcc Confidence 00 00 012788887543 5567877665444 4444434333333333 34453 Q ss_pred EEeccCCCcCCC--Cc-cccee-------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccc Q lcl|Aclame:pro 300 YATDSAPPRDSR--GN-MVPWT-------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGV 369 (527) Q Consensus 300 ~~~~g~~~~d~~--G~-~~p~~-------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~ 369 (527) .+++-....+++ -+ ..-|+ -..|.+.=++.+.+|..+...+.-..+.+..+...+.|+..=++|..-+|. T Consensus 224 gil~~~~~l~~e~~~~~~~~~~~~~~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~ 303 (424) T protein:vir:45 224 GIVSVKSGLNKESWGWLKDQWQKASQALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMIND 303 (424) T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 333221112211 00 01111 124566668889999999976655667788888889999999999999997 Q ss_pred ccccccccHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC Q lcl|Aclame:pro 370 VDAAVAESGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN 443 (527) Q Consensus 370 ~d~s~a~SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D 443 (527) .+.+.- |++. ++..+.|++. .+++. +-..++...+ . .....+++.....+-.| T Consensus 304 ~~~~t~-sn~eq~~~~f~~~tL~P~~~-----------~ie~~---ln~kLl~~~e-~-----~~g~~i~fd~~~llr~d 362 (424) T protein:vir:45 304 LEKATF-SNISAQAIQFVRYTMMPWVT-----------NWEQE---LNRRLFTRAE-L-----AAGYYVRFNLTGLLRGT 362 (424) T ss_pred CCCCCc-ccHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHhcCChhh-h-----cCCcEEEeechhhhccC Confidence 654432 2211 1112222222 12121 1111221111 1 11123566677778889 Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCC Q lcl|Aclame:pro 444 NEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALN 523 (527) Q Consensus 444 ~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~ 523 (527) .++.++...+++++|+++..++.+++ |.+|-+ .-.+. . -|.......+++.|...++++.| T Consensus 363 ~~~r~~~~~~~~~~g~~T~NE~R~~~----gl~pi~-ggD~~---~-----------~~~n~~~~~~~~~~~~~~~~~~~ 423 (424) T protein:vir:45 363 PQERAQFYHFAITDGWMSRNEARAFE----DMNPVE-GLDEM---L-----------VSVNAANPAGDFKPPKNDEGKTN 423 (424) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCC-Cccee---e-----------ecccccccccccCCCCCCCCCCC Confidence 99999999999999999999999876 444432 21111 0 01111111122333333333333 Q ss_pred C Q lcl|Aclame:pro 524 G 524 (527) Q Consensus 524 ~ 524 (527) - T Consensus 424 ~ 424 (424) T protein:vir:45 424 E 424 (424) T ss_pred C Confidence 3 No 217 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=92.11 E-value=0.013 Score=30.96 Aligned_cols=362 Identities=10% Similarity=0.040 Sum_probs=151.6 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |+.--+. +.....-.+.++..+. ..+..+..+.... .|- ++.+ ... ..|.+++++ T Consensus 1 Mg~~~~~-------~~~k~~~~~~~~~~~~------~~~~~~~~~~~~~--~v~-~~~~-----l~~----~~v~~~i~~ 55 (383) T protein:vir:10 1 MGLLTPK-------NFSKRNAKNMVYPSNP------AFFTTTVGGMQLS--YVS-ALSA-----LQN----TNVYSVINR 55 (383) T ss_pred CCccccc-------ccccccccccccccch------hhhhhhccCcccc--ccc-hhHh-----hcc----hHHHHHHHH Confidence 5543211 0011111111111111 1111111111100 010 1111 000 123333333 Q ss_pred hccC---ccccccCcchhHHHHHHHHHHhcC--c--hhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEE Q lcl|Aclame:pro 81 LGQG---LKWEFSKKDAKVDDAIRVLFDREN--W--EQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYF 153 (527) Q Consensus 81 Lg~~---~~~~i~~~~~~v~~~lr~w~~~e~--l--~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~f 153 (527) +.-. .+.++. .......|+ +-| + ..-+.....+.+..|.|+..+..++ +-+-..+|..+- T Consensus 56 ia~~ia~~~~~~~--~~~~~~ll~----~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~~-------~~~~p~~~~~v~ 122 (383) T protein:vir:10 56 IASDVSSAHFKTE--NTATLNRLE----SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQN-------LEHIPNSDVQIN 122 (383) T ss_pred HHHhhccCceeec--ccchhhhhh----CCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcCc-------eeEeecCcceEE Confidence 3211 122222 111222222 222 1 1223445566677799987776442 111122222222 Q ss_pred EEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccccccee Q lcl|Aclame:pro 154 PYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIK 233 (527) Q Consensus 154 p~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~ 233 (527) +..+.+ + +.|.......| ...+. T Consensus 123 ~~~~~~--~--------------------------~~~~~~~~~~~-------~~~~~---------------------- 145 (383) T protein:vir:10 123 YLPGNM--G--------------------------IVYTVLESNDR-------PKMVL---------------------- 145 (383) T ss_pred EEEcCC--c--------------------------eEEEEEEcCCc-------eEEEE---------------------- Confidence 211111 0 00100011100 00000 Q ss_pred eeccCcccccccccccccceEeeCCCCCC--CCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE--eccCCCcC Q lcl|Aclame:pro 234 KLSTLTEEEPLPEQITTLPVFHFRGHPIM--NAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA--TDSAPPRD 309 (527) Q Consensus 234 ~~~~~~~e~~l~~pi~~iPVV~~pN~~~~--~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~--~~g~~~~d 309 (527) + .=-|+||++..++ +...|.|-|+-+...++...+...-......-.+.|-.. +.+.. .+ T Consensus 146 -----------~----~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~-~~ 209 (383) T protein:vir:10 146 -----------R----QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL-SD 209 (383) T ss_pred -----------c----ccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC-CC Confidence 0 1137899875333 334687777666665555444433333333335666433 33321 12 Q ss_pred CCCc---cccee-----cCCCeeEecCCCCceEEeccccChHH-HHHHHHHHHHHHHHhhcCchhhcccccccccccHHH Q lcl|Aclame:pro 310 SRGN---MVPWT-----ISPLGMVEHGQNNKIYRVNGVASLEP-SQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIA 380 (527) Q Consensus 310 ~~G~---~~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~-~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~A 380 (527) +... ..-|+ -..|.++-++++.++..+...++-.. +.+..+...+.|+..-++|++-+|..+.+++ .+.. T Consensus 210 ~e~~~~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~-~~sn 288 (383) T protein:vir:10 210 GKDLESAREEFEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTES-QHSN 288 (383) T ss_pred HHHHHHHHHHHHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCC-cccc Confidence 1000 00111 12355666888899999987654444 4577888899999999999999986543321 1111 Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 381 LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 381 Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) ++- .+..+...+.-.+ .++-..+..-++.. .+++.+...+..|.++.++...+++++|++ T Consensus 289 ~eq-----------~~~~~~~~l~P~~----~~ie~~l~~~l~~~-----~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~ 348 (383) T protein:vir:10 289 IDQ-----------IKATYLANLNSYV----NPIVDELRLKMNAP-----DLELDIKDMLDVDDSILINQVSNLAKSGVL 348 (383) T ss_pred HHH-----------HHHHHHHHHHHHH----HHHHHHHHHhhCCc-----eEEeechhhhccCHHHHHHHHHHHHhCCCc Confidence 221 1111111111111 11111111001111 256678888899999999999999999999 Q ss_pred cHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCc Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFEL-TEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPD 515 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~-~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d 515 (527) +..++.++| |.+| +..+.-+. -.++. ...+|.+| T Consensus 349 t~nE~R~~l----g~~p~~~~d~~~~--------------~~~~~---~~~gGd~e 383 (383) T protein:vir:10 349 GAEQAQFIL----TRSGFLPDNLPEF--------------KPLTN---ETKGGDDK 383 (383) T ss_pred CHHHHHHHh----CCCcccCCccccc--------------CCCcc---cCCCCCCC Confidence 999999977 3233 21111000 01111 11223333 No 218 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=90.66 E-value=0.02 Score=29.93 Aligned_cols=424 Identities=12% Similarity=0.071 Sum_probs=151.6 Q ss_pred CCCChhhhh--hhhHHhhcccCCC-CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhh Q lcl|Aclame:pro 1 MGQDKRQYG--STQQLRAGEANFP-NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAK 77 (527) Q Consensus 1 m~~~~~qy~--~~~~~~~~~~~~~-~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~ 77 (527) |.-++.-=. .+-..+.+-+.+| +.-..-.-+---.|..|...|.+++.-=++| .....+...| +. T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i---~t~~~~va~~---------~~ 101 (535) T protein:vir:10 34 KAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQAII---RTRTNQVLTY---------SN 101 (535) T ss_pred hhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhccChhHHHHH---HHHHHHHHHH---------HH Confidence 111111100 0000111111100 0000000000001111222222221000000 0000000000 01 Q ss_pred hhhh---ccCccccccCc----c-hhH--HHHHHHHHH-hcC--ch------hhHHHHhHhhhhcccEEE-EEEecCCCC Q lcl|Aclame:pro 78 MRFL---GQGLKWEFSKK----D-AKV--DDAIRVLFD-REN--WE------QKFESLKRWTEIRGDYVL-LLIGDDEKD 137 (527) Q Consensus 78 ~~~L---g~~~~~~i~~~----~-~~v--~~~lr~w~~-~e~--l~------~k~~~~~r~a~~~GDav~-~i~~d~~k~ 137 (527) ++++ +.+++..+... . ++. ...|...+. +-| +. .-+....+..++.|-+.| .|..|. + T Consensus 102 i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~-~- 179 (535) T protein:vir:10 102 PSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKND-S- 179 (535) T ss_pred HHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEECC-C- Confidence 1111 12222211111 0 010 011111111 111 11 112233445565565544 666663 3 Q ss_pred CccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccc Q lcl|Aclame:pro 138 EGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPG 217 (527) Q Consensus 138 ~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g 217 (527) |+-+.+..++|..+.+..+++.......++ . . .+ + ....+ + T Consensus 180 -G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~---------------------~---~-~~-~------~~~~~---~--- 220 (535) T protein:vir:10 180 -NELDHFNAVDASKVVISYSPRSKDQPRKFE---------------------Q---F-VS-E------TKSVK---F--- 220 (535) T ss_pred -CcEEEEEEeCCceeEEEEcCccccCceEEE---------------------E---E-ec-C------ceeEE---E--- Confidence 334568889999999887765321111110 0 0 00 0 00000 0 Q ss_pred cccccccccccccceeeeccCcccccccccccccceEeeCCCCCC---CCccCCccccchHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 218 KWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIM---NAMFGRSGLAGLESLIASVNQTMTDEDLIMVF 294 (527) Q Consensus 218 ~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~---~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~ 294 (527) . + + =|+||+..++. ...+|.|-|+-+...+... +.-......+ T Consensus 221 ------------------~--------~---~--eiih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~---~aa~~~~~~~ 266 (535) T protein:vir:10 221 ------------------S--------E---R--NLTFINYWNLSDTDRRGYGYSPVEASIPLIRAI---YDTEQFNARF 266 (535) T ss_pred ------------------C--------c---c--cEEEEeccCCCCcccccccccHHHHHHHHHHHH---HHHHHHHHHH Confidence 0 0 0 15666644333 3455766666555444444 3333333333 Q ss_pred ---hCCce--EEeccCC-C-cCCC-Cc--cccee------cCCCee-EecCCCCceEEeccccChHHHHHHHHHHHHHHH Q lcl|Aclame:pro 295 ---GGLGF--YATDSAP-P-RDSR-GN--MVPWT------ISPLGM-VEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQ 357 (527) Q Consensus 295 ---~g~P~--~~~~g~~-~-~d~~-G~--~~p~~------v~pg~~-~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~ 357 (527) .+.|- +...+.. + .+.. =+ ..-|+ -+.|.+ +-++++-+|..+...+.=..|.+..+...+.|+ T Consensus 267 f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa 346 (535) T protein:vir:10 267 FSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTA 346 (535) T ss_pred HhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHH Confidence 45563 3332211 1 1110 00 00111 112333 334566788999887766678888899999999 Q ss_pred HhhcCchhhcccccccccccH-HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEe Q lcl|Aclame:pro 358 QTKGIPDIAVGVVDAAVAESG-IALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITF 436 (527) Q Consensus 358 ~vs~tP~va~G~~d~s~a~SG-~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w 436 (527) .+=++|++-+|-.+.++-.+. -+-+..++ +-++.+...|. ...+.-++.+|-..+...+..... ..+.+.| T Consensus 347 ~afgVPp~~lG~~~~at~sn~~~~~~~~~~---s~~E~~~~~~~---~~~L~P~l~~ie~~ln~~Ll~~~~--~~~~f~f 418 (535) T protein:vir:10 347 AIFQMQPEEINFPNNGGSTGKSGTKSVNEG---STAKAKLESSK---DKGLTPLLSFIEQVINDKIMRYVD--TDYRFSF 418 (535) T ss_pred HHhCCCHHHhccccCcccccchhhhhhhhh---hhHHHHHHHHH---HHHHHHHHHHHHHHHhhhcccccC--CeEEEEe Confidence 999999999997654322110 01111222 11111111111 000111111111111111111111 1356778 Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHH-----HHHHHHhcCccc---ccc Q lcl|Aclame:pro 437 RDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEE-DFRQATEDKKTQ-----GIAQAEAADPFG---AQM 507 (527) Q Consensus 437 ~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~-~~~~~~e~~a~~-----a~~~~aa~d~~g---~~~ 507 (527) ...+..|..+..+ ..++..+|.++.-++.+++ |.+|-+. |. -........ ...+....++.. ... T Consensus 419 ~~l~~~d~~~r~~-~~~~~~~g~lT~NE~R~~~----gl~piegGD~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 492 (535) T protein:vir:10 419 TLGDAQDKLQEEQ-VWKLKLANGYFINEYRKDH----GLKTVDGLDV-PGFIGSAENFINATGFGQPNVPDSSDDSGSTL 492 (535) T ss_pred ccccccCHHHHHH-HHHHHHcCCCCHHHHHHHh----CCCCCCCccc-cccccchhhcccccccccccCCCCCCCccccC Confidence 8888888777654 5567778889999998876 4444321 21 000000000 000111111111 110 Q ss_pred cccC-CCCc-------ccccccCCCCCC Q lcl|Aclame:pro 508 AAEQ-GIPD-------EEDDQALNGQPL 527 (527) Q Consensus 508 ~~d~-g~~d-------~~~~~~~~~~~~ 527 (527) ..++ ..+. ...|+ .+ .|+ T Consensus 493 ~~~~~q~~~~~~~~~~~g~~~-~~-~~~ 518 (535) T protein:vir:10 493 GERERQERIQHSKDYEKGKDD-PK-SPL 518 (535) T ss_pred CccccCcccccccccccCCCC-CC-CCC Confidence 0000 0000 00011 11 111 No 219 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=90.61 E-value=0.02 Score=29.90 Aligned_cols=411 Identities=11% Similarity=0.044 Sum_probs=155.4 Q ss_pred CCC-------------ChhhhhhhhHHhhcc-------cCCCC-CCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcc Q lcl|Aclame:pro 1 MGQ-------------DKRQYGSTQQLRAGE-------ANFPN-AVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDE 59 (527) Q Consensus 1 m~~-------------~~~qy~~~~~~~~~~-------~~~~~-~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~ 59 (527) +++ ...|++.+-.|+..- .+.+| ..+..+-++....++ +.++++= +. |+|.+.. T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dl-e~tGna~---ie-iIrn~~g 152 (651) T protein:vir:99 78 FGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDY-HGVGWLA---LE-MLTDIEG 152 (651) T ss_pred cCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHH-HHHhhHh---hh-hhhcCcc Confidence 322 345566666665331 12222 234445554333333 3333221 22 3444332 Q ss_pred ccccccc-CCchhHHHHhhhhhhccCccccccCcchhHHHHH-HHHHHhcCchh-hHHHHhHhhhhcccEEEEEEecCCC Q lcl|Aclame:pro 60 GDQRPIY-VPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAI-RVLFDRENWEQ-KFESLKRWTEIRGDYVLLLIGDDEK 136 (527) Q Consensus 60 ~~~~~~~-~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~l-r~w~~~e~l~~-k~~~~~r~a~~~GDav~~i~~d~~k 136 (527) .+..+| +|. . ..+.. ..+..+...+ ..+..+-|..+ .+...+-+-++.+-.+|.+.|...- T Consensus 153 -~pv~L~~lp~-~-----~~Rv~---------~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~ 216 (651) T protein:vir:99 153 -RPVGLAYVPA-R-----TVRVR---------RPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRY 216 (651) T ss_pred -chhhhhhcCh-h-----heeee---------cccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccc Confidence 111221 111 0 01111 0111111111 11111111111 1111111112223334434444322 Q ss_pred CCccceE-EEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccc Q lcl|Aclame:pro 137 DEGSRLS-LHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYE 215 (527) Q Consensus 137 ~~~~r~~-i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~ 215 (527) + ++. +..+.+..+-+...++... +...... .+.+|.-.+.+.+ T Consensus 217 ~---~~~~~~~~~~~~v~~~~~~d~~~-~~~~~~~----------------~~~~g~~~~~~~~---------------- 260 (651) T protein:vir:99 217 R---GQEVVIDESGDEPTIRYREDEES-EREPIFV----------------DRETGDVTTGDAN---------------- 260 (651) T ss_pred c---ceeeeeccCCcceeEEeccCcce-eeeeecc----------------cceeeeEEEcCCC---------------- Confidence 2 221 2223333332222222110 0000000 0001100000000 Q ss_pred cccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH- Q lcl|Aclame:pro 216 PGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF- 294 (527) Q Consensus 216 ~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~- 294 (527) . ...+ |-+. |+||++..+.+...|.|-|+-+...+...+ ...+...-... T Consensus 261 -----------------------~-~~~~--~~~e--ViHir~~~~~~g~~G~spl~~a~~~i~~a~-~a~~~~~~~f~N 311 (651) T protein:vir:99 261 -----------------------G-LENR--PANE--LIFIPNPSILEDDYGVPDWVSAIRTISADE-AAKDYNRDFFDN 311 (651) T ss_pred -----------------------c-eeEe--cccc--eEEecCCCCCCCcccccHHHHHHHHHHHHH-HHHHHHHHHHhc Confidence 0 0000 0011 789998766677888887776665554332 22222222222 Q ss_pred hCCceEE--eccCCCcCCCCc--cccee---cCCCeeEec-----------CCCCceEEecccc-ChHHHHHHHHHHHHH Q lcl|Aclame:pro 295 GGLGFYA--TDSAPPRDSRGN--MVPWT---ISPLGMVEH-----------GQNNKIYRVNGVA-SLEPSQTHMNKAEEA 355 (527) Q Consensus 295 ~g~P~~~--~~g~~~~d~~G~--~~p~~---v~pg~~~el-----------~~~~k~~~ld~~~-~la~~~~~~d~L~~~ 355 (527) .+.|-.+ .++....+..-+ ..-|+ -+.|.+.-| +.+-+|..++... +=+.|.+..+...+. T Consensus 312 G~~p~gil~~~~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~e 391 (651) T protein:vir:99 312 DTIPRMVIKVTGGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHE 391 (651) T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHH Confidence 3445333 344321111000 00011 123333222 2355777777543 235678888888999 Q ss_pred HHHhhcCchhhcccccccccccHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc Q lcl|Aclame:pro 356 MQQTKGIPDIAVGVVDAAVAESGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKK 429 (527) Q Consensus 356 l~~vs~tP~va~G~~d~s~a~SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~ 429 (527) |...=++|.+-+|-.+.++- |.+. ++-.+.|++. .+++.+ -..+|...+... ... T Consensus 392 Ia~afgVPp~~lG~~~~~~~-sn~E~~~~~f~~~tL~P~~~-----------~ie~el---n~kLl~~~e~~~----~~~ 452 (651) T protein:vir:99 392 IAKVLEVPPVKIGVTDSANR-SNSDQQDKDFALEVIQPEQH-----------TFAEWL---YQIIHQQALGVT----DWT 452 (651) T ss_pred HHHHhCCCHHHhccCCCCCc-ccHHHHHHHHHHHHHHHHHH-----------HHHHHH---HHhhcCcccccc----Cce Confidence 99999999999996654321 2111 1222233332 122211 112222211111 112 Q ss_pred eeEEEEeCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHH-HHHHHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 430 LTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDF-RQATEDKKTQGIAQAEAADPFGAQMA 508 (527) Q Consensus 430 ~~v~v~w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~-~~~~e~~a~~a~~~~aa~d~~g~~~~ 508 (527) +.+.+...+.+-.|.++.++...+++++|+++..++.++| |.+|-.++. ...+.... ...++++.. .. T Consensus 453 i~~ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~l----glppi~~~~gd~~l~~~~-----~~~~g~~~~--gg 521 (651) T protein:vir:99 453 IEYELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREEL----GLDPLGEPYGEMTLSEFE-----AEVAGDVAG--GG 521 (651) T ss_pred EEEEeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCCCccccccccccc-----ccccccccc--CC Confidence 3344445567778999999999999999999999999876 444432221 11111110 011112111 01 Q ss_pred ccCCCCcccccccCCCC------------CC Q lcl|Aclame:pro 509 AEQGIPDEEDDQALNGQ------------PL 527 (527) Q Consensus 509 ~d~g~~d~~~~~~~~~~------------~~ 527 (527) .+.+.++.......+.. ++ T Consensus 522 e~~~~~~~~~~~~~~~~e~~~~~~~~~~~e~ 552 (651) T protein:vir:99 522 ETEAVHEPPEENKIGEREWDTVKSELTTKDP 552 (651) T ss_pred CCcccccCccccccccchhhhhhhhhcccch Confidence 11111111100000000 00 No 220 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=90.08 E-value=0.023 Score=29.59 Aligned_cols=394 Identities=10% Similarity=0.020 Sum_probs=168.7 Q ss_pred CCCChhh------------------hhhhhHHhhcccCCCCCCCh---HHHHHHHHHHHHHHHhcCChhheEeeecCCcc Q lcl|Aclame:pro 1 MGQDKRQ------------------YGSTQQLRAGEANFPNAVTD---FDKARLASYRLYEDMYLTNTSDYQVILRGGDE 59 (527) Q Consensus 1 m~~~~~q------------------y~~~~~~~~~~~~~~~~v~~---~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~ 59 (527) |+--++- +.....-+.++.- -+.++. ...+.-..+++|+++-. | T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~iLr~~~~~~ly~~m~~-------------D- 65 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSY-DVVVDREFDELLQGKDGLLVYHKMLS-------------D- 65 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhccccc-ccccccchhHhhccccchHHHHHHhh-------------C- Confidence 4432211 1111111111111 011111 11111112333333321 1 Q ss_pred cccccccCCchhHHHHhhhhhhccCccccccCcchh-----HHHHHHHHHHhc-------CchhhHHHHhHhhhhcccEE Q lcl|Aclame:pro 60 GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAK-----VDDAIRVLFDRE-------NWEQKFESLKRWTEIRGDYV 127 (527) Q Consensus 60 ~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~-----v~~~lr~w~~~e-------~l~~k~~~~~r~a~~~GDav 127 (527) +--.-.+++...-+ .+.+|.|...+++ +.+.++.|.... .|+.-+... =+|+..|-+| T Consensus 66 --------~hi~s~l~~Rk~av-~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~-lda~~~G~s~ 135 (448) T protein:vir:77 66 --------GTVKNALNYIFGRI-RSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIY-ENAYIYGMAA 135 (448) T ss_pred --------hHHHHHHHHHHHHH-hcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHH-HHhhhhccee Confidence 11123455533333 4558887644332 456677776533 233333333 4789999999 Q ss_pred EEEEecCCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccc Q lcl|Aclame:pro 128 LLLIGDDEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAI 207 (527) Q Consensus 128 ~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i 207 (527) +-|.|....+ | +..+..+-+.- + ..+..++| ++++. + .++...+ T Consensus 136 ~Eivw~~~~d-g-~~~~~~l~~r~------~---~~~~~f~~-----~~~~~---l------~~~~~~~----------- 179 (448) T protein:vir:77 136 GEIVLTLGAD-G-KLILDKIVPIH------P---FNIDEVLY-----DEEGG---P------KALKLSG----------- 179 (448) T ss_pred EEEEEeecCC-C-ceeeccccccC------C---Cccceeee-----ecCCc---e------EEEecCC----------- Confidence 9999985332 1 22221111100 0 00011110 11111 0 0000000 Q ss_pred eeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHH Q lcl|Aclame:pro 208 KYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTD 287 (527) Q Consensus 208 ~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd 287 (527) .+.-+.++ .+-.+.|.+++ ||+.+. .++.++|.+-|..+.-..--=+..+.+ T Consensus 180 -----~~~~~~~~--------------------~~~~~lP~~~~--i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~ 231 (448) T protein:vir:77 180 -----EVKGGSQF--------------------VNGLEIPIWKT--VVFLHN-DDGSFTGQSALRAAVPHWLAKRALILL 231 (448) T ss_pred -----cccccccC--------------------CCccccccceE--EEEecC-CcCCcccchHHHHHHHHHHHHHhhHHH Confidence 00000000 01123355665 344554 567899999999988877777889999 Q ss_pred HHHHHHHhCCceEEeccCCCc--C-CCC-cc----cceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 288 EDLIMVFGGLGFYATDSAPPR--D-SRG-NM----VPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQT 359 (527) Q Consensus 288 ~~~i~~~~g~P~~~~~g~~~~--d-~~G-~~----~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~v 359 (527) ....++..|.|+.+..-.+.. + .+= .. ..+.-+-....-++++..+..++...+...+.+.+++..++|+.+ T Consensus 232 w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk~ 311 (448) T protein:vir:77 232 INHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARA 311 (448) T ss_pred HHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCccCHHHHHHHHHHHHHHH Confidence 999999999998765432211 1 110 00 011112222333889999999998777778889999999888874 Q ss_pred hcCchhhcccc---cccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhcccccccceeEEEE Q lcl|Aclame:pro 360 KGIPDIAVGVV---DAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFF-YNLVTQWLPAYEGVGIDDADKKLTVTIT 435 (527) Q Consensus 360 s~tP~va~G~~---d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~-~~li~~~L~~~e~v~~~~~~~~~~v~v~ 435 (527) - +|.+ +.++..|..++.- ..-+..... ....+.+...+ +.++..++ .+-+. .......++ T Consensus 312 i------LGqtlTs~~~~g~~~~~~~~-~~~v~~~~~---~aDa~~i~~tln~~Li~~l~----~lNfg--~~~~~P~~~ 375 (448) T protein:vir:77 312 L------GIDFNTVQLNMGVQAVNIGE-FVSLTQQTI---ISLQREFASAVNLYLIPKLV----LPNWP--GATRFPRLT 375 (448) T ss_pred H------hccccccccccchhhhhhhh-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HhcCC--CCCCCCEEE Confidence 3 3433 2222112222221 111111110 01112222322 33444332 12222 112235788 Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccccc--ccCCC Q lcl|Aclame:pro 436 FRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMA--AEQGI 513 (527) Q Consensus 436 w~d~lP~D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~--~d~g~ 513 (527) |...-|.|.++.++.+.+|+. +++ +..+.+.+.++.. .+++..-... .++ T Consensus 376 f~~~e~eDl~~~a~~~~~l~~--------~~~---~~~~ip~~~~~~~---------------~~~~~~~~~~~~~~~-- 427 (448) T protein:vir:77 376 FEMEERNDFSAAANLMGMLIN--------AVK---DSEDIPTELKALI---------------DALPSKMRRALGVVD-- 427 (448) T ss_pred ecCCChhhHHHHHHHhHHHHH--------HHH---HHhcCCccCCcCC---------------CCCchhcccccCCCC-- Confidence 999989888777776666542 121 1112211111100 0011100000 111 Q ss_pred CcccccccCCCCCC Q lcl|Aclame:pro 514 PDEEDDQALNGQPL 527 (527) Q Consensus 514 ~d~~~~~~~~~~~~ 527 (527) |+-+.+.....+-. T Consensus 428 ~~~~~~~~~~~~~~ 441 (448) T protein:vir:77 428 EVREAVRQPADSRY 441 (448) T ss_pred CCCchhhcchhhHH Confidence 12222222222222 No 221 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=89.71 E-value=0.025 Score=29.38 Aligned_cols=403 Identities=11% Similarity=0.040 Sum_probs=173.5 Q ss_pred CC---------------CChhhhhhhhHHhhcccCCCCC-CChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccc Q lcl|Aclame:pro 1 MG---------------QDKRQYGSTQQLRAGEANFPNA-VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRP 64 (527) Q Consensus 1 m~---------------~~~~qy~~~~~~~~~~~~~~~~-v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~ 64 (527) |- .|+|++..-..|.....- ++ .+..+..- ....+-..+...+..+. ...+-.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~al~~~~ 72 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKR--DLQYNEDDLQM-----MVQTLPGFQGTKLRQYK-DIEAIRHSD 72 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccc--cccCCCcchHH-----HHHHhcccCcccccccc-hhhhhccHH Confidence 21 233444444444433332 11 12222111 11111111111111111 111101111 Q ss_pred ccCCchhHHHHhhhhhhccCccccccCcchhH-HH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCC Q lcl|Aclame:pro 65 IYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKV-DD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDE 138 (527) Q Consensus 65 ~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v-~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~ 138 (527) +| +|-.+|-..++-| +..+...++.. .. ..+-+-.+-| +. .-........++.|.|+..|.+|. + T Consensus 73 V~--~cv~~Ia~~iA~l----p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~-- 143 (441) T protein:vir:94 73 IF--TAVMMIASDLARM----PIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK-T-- 143 (441) T ss_pred HH--HHHHHHHHhhccC----ceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C-- Confidence 22 1222222211111 33332222211 11 1111212212 11 223455666777899988888874 3 Q ss_pred ccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccc Q lcl|Aclame:pro 139 GSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGK 218 (527) Q Consensus 139 ~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~ 218 (527) |+=+.+..++|+.+-+..++++ .+... +.. ....+. .+..+ T Consensus 144 G~~~~L~~i~~~~v~v~~d~~g--~~~~~-----~~~-------------------~~~~~~-----~~~~~-------- 184 (441) T protein:vir:94 144 GEPMNLTFRKTSEIELKSDARG--RLYYF-----HQR-------------------IDSNGN-----NIERN-------- 184 (441) T ss_pred CcEEEEEEEcCceeEEEECCCc--cEEEE-----EEE-------------------eccCCc-----eeEEE-------- Confidence 3334578899998887766542 11111 000 000000 00000 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) + + .=-|+||++.+ .+...|.|-|+-+...+.-.+..-.-......-.+.| T Consensus 185 ----------------~---------~----~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p 234 (441) T protein:vir:94 185 ----------------V---------K----FEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHA 234 (441) T ss_pred ----------------E---------c----cccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 0 0 11168888764 3456788877665555543322222222222334456 Q ss_pred eEE--eccCCCcCCCCc---cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhc Q lcl|Aclame:pro 299 FYA--TDSAPPRDSRGN---MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAV 367 (527) Q Consensus 299 ~~~--~~g~~~~d~~G~---~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~ 367 (527) -.+ +.+... |++.. ..-|. -+.|.++=|+++-+|..++..++-..+.+..+...+.|+..=++|.+-+ T Consensus 235 ~gil~~~~~~~-~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 313 (441) T protein:vir:94 235 GGILKMKGVLD-NKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKF 313 (441) T ss_pred cEEEEcCCCCC-CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHc Confidence 333 333321 22110 01111 1135566688888999999877777888988999999999999999999 Q ss_pred ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHH Q lcl|Aclame:pro 368 GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKR 447 (527) Q Consensus 368 G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~ 447 (527) |....++ |-...++.|. . + .+ .+...+++.+ -..+++. . ....+++.+...+-.|.++. T Consensus 314 g~~~~~~--s~~q~~~~~~---~-t--l~-P~~~~ie~el---n~kl~~~--------~-~~~~~~fd~~~llr~D~~~~ 372 (441) T protein:vir:94 314 GIETANM--SITDANLDYL---S-T--LK-PYITCVCAEL---NFKFNDE--------Y-VNREFKFDTTEIRVVDEKTQ 372 (441) T ss_pred CCCCCCc--cHHHHHHHHH---H-H--HH-HHHHHHHHHH---hhhcccc--------c-cCceEEeechhhhccCHHHH Confidence 8433222 2111122111 0 0 00 1111222211 1111111 1 12235566667777899999 Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCc-----ccccccccCCCCccc Q lcl|Aclame:pro 448 FAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADP-----FGAQMAAEQGIPDEE 517 (527) Q Consensus 448 i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~-----~g~~~~~d~g~~d~~ 517 (527) ++...+++++|+++..++.+++ |.+|-+.-......--. ........+. .+.+-....|.++.+ T Consensus 373 ~~~~~~~i~~G~~T~NE~R~~~----gl~Pi~ggd~~~~~~~~--n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 373 AEIDKINIDSGKMNIDEIRQRD----GLAPIPGGNGSIHRVDL--NHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred HHHHHHHHhCCCcCHHHHHHHh----CCCCCCCCCcceEeecc--cccccccccccccccccccccccCCCCCCC Confidence 9999999999999999999876 44443221111100000 0000000010 000001112222222 No 222 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=89.71 E-value=0.025 Score=29.38 Aligned_cols=403 Identities=11% Similarity=0.040 Sum_probs=173.5 Q ss_pred CC---------------CChhhhhhhhHHhhcccCCCCC-CChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccc Q lcl|Aclame:pro 1 MG---------------QDKRQYGSTQQLRAGEANFPNA-VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRP 64 (527) Q Consensus 1 m~---------------~~~~qy~~~~~~~~~~~~~~~~-v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~ 64 (527) |- .|+|++..-..|.....- ++ .+..+..- ....+-..+...+..+. ...+-.... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R--~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~al~~~~ 72 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKR--DLQYNEDDLQM-----MVQTLPGFQGTKLRQYK-DIEAIRHSD 72 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccc--cccCCCcchHH-----HHHHhcccCcccccccc-hhhhhccHH Confidence 21 233444444444433332 11 12222111 11111111111111111 111101111 Q ss_pred ccCCchhHHHHhhhhhhccCccccccCcchhH-HH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCC Q lcl|Aclame:pro 65 IYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKV-DD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDE 138 (527) Q Consensus 65 ~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v-~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~ 138 (527) +| +|-.+|-..++-| +..+...++.. .. ..+-+-.+-| +. .-........++.|.|+..|.+|. + T Consensus 73 V~--~cv~~Ia~~iA~l----p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-~-- 143 (441) T protein:vir:79 73 IF--TAVMMIASDLARM----PIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK-T-- 143 (441) T ss_pred HH--HHHHHHHHhhccC----ceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECC-C-- Confidence 22 1222222211111 33332222211 11 1111212212 11 223455666777899988888874 3 Q ss_pred ccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccc Q lcl|Aclame:pro 139 GSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGK 218 (527) Q Consensus 139 ~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~ 218 (527) |+=+.+..++|+.+-+..++++ .+... +.. ....+. .+..+ T Consensus 144 G~~~~L~~i~~~~v~v~~d~~g--~~~~~-----~~~-------------------~~~~~~-----~~~~~-------- 184 (441) T protein:vir:79 144 GEPMNLTFRKTSEIELKSDARG--RLYYF-----HQR-------------------IDSNGN-----NIERN-------- 184 (441) T ss_pred CcEEEEEEEcCceeEEEECCCc--cEEEE-----EEE-------------------eccCCc-----eeEEE-------- Confidence 3334578899998887766542 11111 000 000000 00000 Q ss_pred ccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc Q lcl|Aclame:pro 219 WDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG 298 (527) Q Consensus 219 wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P 298 (527) + + .=-|+||++.+ .+...|.|-|+-+...+.-.+..-.-......-.+.| T Consensus 185 ----------------~---------~----~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p 234 (441) T protein:vir:79 185 ----------------V---------K----FEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHA 234 (441) T ss_pred ----------------E---------c----cccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 0 0 11168888764 3456788877665555543322222222222334456 Q ss_pred eEE--eccCCCcCCCCc---cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhc Q lcl|Aclame:pro 299 FYA--TDSAPPRDSRGN---MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAV 367 (527) Q Consensus 299 ~~~--~~g~~~~d~~G~---~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~ 367 (527) -.+ +.+... |++.. ..-|. -+.|.++=|+++-+|..++..++-..+.+..+...+.|+..=++|.+-+ T Consensus 235 ~gil~~~~~~~-~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~l 313 (441) T protein:vir:79 235 GGILKMKGVLD-NKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKF 313 (441) T ss_pred cEEEEcCCCCC-CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHc Confidence 333 333321 22110 01111 1135566688888999999877777888988999999999999999999 Q ss_pred ccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHH Q lcl|Aclame:pro 368 GVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKR 447 (527) Q Consensus 368 G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~ 447 (527) |....++ |-...++.|. . + .+ .+...+++.+ -..+++. . ....+++.+...+-.|.++. T Consensus 314 g~~~~~~--s~~q~~~~~~---~-t--l~-P~~~~ie~el---n~kl~~~--------~-~~~~~~fd~~~llr~D~~~~ 372 (441) T protein:vir:79 314 GIETANM--SITDANLDYL---S-T--LK-PYITCVCAEL---NFKFNDE--------Y-VNREFKFDTTEIRVVDEKTQ 372 (441) T ss_pred CCCCCCc--cHHHHHHHHH---H-H--HH-HHHHHHHHHH---hhhcccc--------c-cCceEEeechhhhccCHHHH Confidence 8433222 2111122111 0 0 00 1111222211 1111111 1 12235566667777899999 Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCc-----ccccccccCCCCccc Q lcl|Aclame:pro 448 FAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADP-----FGAQMAAEQGIPDEE 517 (527) Q Consensus 448 i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~-----~g~~~~~d~g~~d~~ 517 (527) ++...+++++|+++..++.+++ |.+|-+.-......--. ........+. .+.+-....|.++.+ T Consensus 373 ~~~~~~~i~~G~~T~NE~R~~~----gl~Pi~ggd~~~~~~~~--n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 373 AEIDKINIDSGKMNIDEIRQRD----GLAPIPGGNGSIHRVDL--NHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred HHHHHHHHhCCCcCHHHHHHHh----CCCCCCCCCcceEeecc--cccccccccccccccccccccccCCCCCCC Confidence 9999999999999999999876 44443221111100000 0000000010 000001112222222 No 223 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=89.56 E-value=0.026 Score=29.31 Aligned_cols=430 Identities=12% Similarity=0.102 Sum_probs=175.7 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC----hhheEeeecCCcccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN----TSDYQVILRGGDEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~----~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~ 76 (527) -+|++.|--+++--++.... .|+-| .||.++ -.-|+.+ .|.+. =+|.+++ T Consensus 77 ~~~~~~~~~~~~~~~~~~~~--------------~~~~l-~~~~~~~F~Gy~~la~l-------aQ~~e----yr~~~~~ 130 (694) T protein:vir:10 77 SNYTPRERRAASYALDFNGT--------------SMDAL-SFVTSSGFPGFPTLVLL-------AQLPE----YRAMHEV 130 (694) T ss_pred cCCCccccchhhhhhccCcc--------------cccch-hhhhccCcchHHHHHHH-------hhccc----hhhHHHH Confidence 23433333333322222111 11122 244433 1111111 13333 3566666 Q ss_pred hhhhhccCccc--------------------cccCcch-hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEE--EEEEec Q lcl|Aclame:pro 77 KMRFLGQGLKW--------------------EFSKKDA-KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYV--LLLIGD 133 (527) Q Consensus 77 ~~~~Lg~~~~~--------------------~i~~~~~-~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav--~~i~~d 133 (527) ++..+=. +| ++....+ +--+.|..=+++=++-.++..+-+|+=.-|=++ |.|..| T Consensus 131 ia~e~~R--~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gd 208 (694) T protein:vir:10 131 LADECIR--TWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGD 208 (694) T ss_pred HHHHhhc--ccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeecC Confidence 6666511 12 1111111 223455555555556678888888888888885 455565 Q ss_pred CCCCCccceEEEEEccceEEEEecCCCCCceEEEEEEE-eeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeec Q lcl|Aclame:pro 134 DEKDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVD-EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEE 212 (527) Q Consensus 134 ~~k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~-~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~ 212 (527) +..- .... ..+|..+ ..|.+.++.-.+ -|..|+... +. .| .+.= T Consensus 209 d~~l-~~PL---~~~~~~I-------~kGslKGl~ViDp~~vtP~~~n----------~~-------dP--~spd----- 253 (694) T protein:vir:10 209 DQIM-DTPL---VPRPYTV-------PKGSFQGLRVVEPYWVTPNNYN----------SI-------NP--VADD----- 253 (694) T ss_pred cccc-cccc---ccccccc-------cCcceeeeEeecccccccchhh----------hc-------cc--hhhc----- Confidence 4210 0000 0011110 112333333221 122331100 00 00 0000 Q ss_pred ccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 213 LYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIM 292 (527) Q Consensus 213 ~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~ 292 (527) .+.+..|.-. ...++.-++.... -.++|.. ..+...+||.|-.+-+.+-++.-.++.-...-.+ T Consensus 254 fgkP~~y~V~-G~~IH~SRL~~f~----g~plPd~-----------LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~~Li 317 (694) T protein:vir:10 254 FYKPSTWWMI-GTEVHATRLHTIV----SRPVGDM-----------LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIV 317 (694) T ss_pred cCCCceEEEe-ceEEeeeeEEEec----CCCchhh-----------hhcccccCcccHHHHHHHHHHHHHHHHhHHHHHH Confidence 1122222210 1112221111110 0011111 1234568999988887776666544433333222 Q ss_pred HHhCCceEEeccCCCcCCCCcc---------cceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 293 VFGGLGFYATDSAPPRDSRGNM---------VPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGI 362 (527) Q Consensus 293 ~~~g~P~~~~~g~~~~d~~G~~---------~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~t 362 (527) .......+-+........-++. .-++..-|+++ ++ .+-+|.+.+. .|+++-+-+...+.+++..|++ T Consensus 318 ~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~l-lDk~~Eefeq~st--slSGLddVi~qf~q~VAgaa~I 394 (694) T protein:vir:10 318 KQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILF-LDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHI 394 (694) T ss_pred HhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEE-EecCCcceEEEec--ccCCHHHHHHHHHHHHHhhhcC Confidence 2211111111111111111110 01233345544 55 4788888885 8999999999999999999999 Q ss_pred chh-hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCC Q lcl|Aclame:pro 363 PDI-AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKP 441 (527) Q Consensus 363 P~v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP 441 (527) |.+ -||+--.+-..||-.=.-.|=-.+...|+.+ +...+++++ ++|.+. . ++..+. ...+.|++.-- T Consensus 395 PltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~--L~p~L~rl~-~ii~rS------~-~G~idp--~i~~~fnPL~q 462 (694) T protein:vir:10 395 PLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA--LQQLMNDVI-VMIQLS------L-FGAVDP--SIKWQWNALRE 462 (694) T ss_pred chhhhhccCcccccccchhhHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHH------h-cCCCCC--cceEEeCCCCC Confidence 994 5664322222244444444544445444444 334454432 222211 1 222222 35678997666 Q ss_pred CCHHHHHH-------HHHHHHhcCCccHHHHHHHHHHh--cCCCCch-HHHHHH---HHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 442 VNNEKRFA-------QLLELWEAGLIPAKKLTEELSKI--MGFELTE-EDFRQA---TEDKKTQGIAQAEAADPFGAQMA 508 (527) Q Consensus 442 ~D~~~~i~-------~~v~l~~aGlls~~ta~~~L~~~--g~~~~~e-~~~~~~---~e~~a~~a~~~~aa~d~~g~~~~ 508 (527) -+.++.++ .-+.+..+|+|+.++..++|.+- ++ |.. .|.... ..+-.....+.+--....|.+. T Consensus 463 mtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~--Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~- 539 (694) T protein:vir:10 463 LDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGP--YAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDT- 539 (694) T ss_pred cCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcc--cccccccccCCCcCccchhhhhHhhhcCccccccc- Confidence 56554443 23567789999999999988542 33 221 110000 0000001110000011111111 Q ss_pred ccCCCCcccccccCCCCCC Q lcl|Aclame:pro 509 AEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 509 ~d~g~~d~~~~~~~~~~~~ 527 (527) |+.|+.-+-.--..+..++ T Consensus 540 ~~~~~~~~g~~~~~~v~~~ 558 (694) T protein:vir:10 540 GAPGGARAGATAPPTVANV 558 (694) T ss_pred CCCCcccccccCCCccccc Confidence 1111111111111111222 No 224 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=88.95 E-value=0.029 Score=29.00 Aligned_cols=406 Identities=10% Similarity=0.030 Sum_probs=172.6 Q ss_pred CC-CChhhhhhhhHHhhcccC-----CCCCCChHHHHH--HHHH------HHHHHHhcCChhheEeeecCCccccccccc Q lcl|Aclame:pro 1 MG-QDKRQYGSTQQLRAGEAN-----FPNAVTDFDKAR--LASY------RLYEDMYLTNTSDYQVILRGGDEGDQRPIY 66 (527) Q Consensus 1 m~-~~~~qy~~~~~~~~~~~~-----~~~~v~~~d~~R--l~aY------~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~ 66 (527) |- ||++-|- .+|..++.+ ++|...-.++|- .... +.+..+..++...+. ...+-....+| T Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~al~~~~V~ 74 (441) T protein:vir:98 1 MHWYNTDCYF--VDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYK----DIEAIRHSDIF 74 (441) T ss_pred CceecCccce--eccccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccccc----hhhhhccHHHH Confidence 32 3443331 122222222 112221112210 0011 111112211111110 00110011111 Q ss_pred CCchhHHHHhhhhhhccCccccccCcchh-HHH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCcc Q lcl|Aclame:pro 67 VPNGEKLIEAKMRFLGQGLKWEFSKKDAK-VDD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGS 140 (527) Q Consensus 67 ~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~-v~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~ 140 (527) ..|+.+++-++ ..+..+...++. ... ..+-+-.+-| |. .-........++.|.|+..|.+|. .|+ T Consensus 75 -----acv~~Ia~~iA-~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~---~G~ 145 (441) T protein:vir:98 75 -----TAVMMIASDLA-RMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK---TGE 145 (441) T ss_pred -----HHHHHHHHhhc-cCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcC---CCc Confidence 12222222221 123333222222 111 1121212111 11 223455666777899988888884 244 Q ss_pred ceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccc Q lcl|Aclame:pro 141 RLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWD 220 (527) Q Consensus 141 r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd 220 (527) -+.+..++|+.+-+..++++ ++.-.+. +.+. .| ..+..+ T Consensus 146 ~~~L~~i~~~~v~v~~~~~g--~~~~~~~---~~~~---------------------~~-----~~~~~~---------- 184 (441) T protein:vir:98 146 PMNLTFRKTSEIELKLDARG--RLYYFHQ---RIDS---------------------NG-----NNIERN---------- 184 (441) T ss_pred EEEEEEEcCceeEEEECCCC--cEEEEEE---Eecc---------------------Cc-----ceeeEE---------- Confidence 55678899988887765542 2211100 0000 00 000000 Q ss_pred ccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceE Q lcl|Aclame:pro 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY 300 (527) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~ 300 (527) ++ .=-|+||++.+. +...|.|-|+-+...+...+..-.-......-.+.|-. T Consensus 185 -----------------------~~----~~dviHir~~~~-dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~g 236 (441) T protein:vir:98 185 -----------------------VK----FEDMLDIKFYSL-DGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGG 236 (441) T ss_pred -----------------------Ec----cccEEEeccCCC-CCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcE Confidence 00 011678887643 44678877766655554433322222223333455643 Q ss_pred E--eccCCCcCCCCc-c--ccee---c---CCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccc Q lcl|Aclame:pro 301 A--TDSAPPRDSRGN-M--VPWT---I---SPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGV 369 (527) Q Consensus 301 ~--~~g~~~~d~~G~-~--~p~~---v---~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~ 369 (527) + +.+... ++... . .-|. - +.|.++-|+++-+|..++..++-..+.+..+...+.|+..=++|.+-+|. T Consensus 237 il~~~~~~~-~~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~ 315 (441) T protein:vir:98 237 ILKMKGVLD-NKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGI 315 (441) T ss_pred EEEeCCCCC-CHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCC Confidence 3 333221 21110 0 1121 1 13556678888899999987777788898999999999999999999984 Q ss_pred ccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHH Q lcl|Aclame:pro 370 VDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFA 449 (527) Q Consensus 370 ~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~ 449 (527) ...++ |-...++.|- . + .+ .+...+++.+ -..+++. . ....+++.....+-.|.++.++ T Consensus 316 ~~~~~--s~~q~~~~y~---~-t--l~-P~~~~ie~~l---n~~L~~~--------~-~~~~~~fd~~~llr~d~~~~~~ 374 (441) T protein:vir:98 316 ETANM--SITDANLDYL---S-T--LK-PYITCVCAEL---NFKFNDE--------Y-VNREFKFDTTEIRVVDEKTQAE 374 (441) T ss_pred CCCCc--cHHHHHHHHH---H-H--HH-HHHHHHHHHH---Hhhcccc--------c-cCceEEEechhhhccCHHHHHH Confidence 32221 2111112110 0 0 00 1111222221 1111111 1 1223555566677789999999 Q ss_pred HHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH-HHH---HHHhcCcccccccccCCCCccc Q lcl|Aclame:pro 450 QLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQ-GIA---QAEAADPFGAQMAAEQGIPDEE 517 (527) Q Consensus 450 ~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~-a~~---~~aa~d~~g~~~~~d~g~~d~~ 517 (527) ...+++++|+++..++.+++ |.+|-+.-.....-.-.-. -.+ +.-...+-+.. ....|+++.+ T Consensus 375 ~~~~~~~~G~~T~NE~R~~~----gl~pi~gGd~~~~~~~~n~~~~~~~~~~q~~~~~~~~-~~~kgGe~ne 441 (441) T protein:vir:98 375 IDKINIDSGKMNIDEIRQRD----GLAPIPGGNGSIHRVDLNHVNIELVDEYQMNKSRATD-KKLKGGEENE 441 (441) T ss_pred HHHHHHhCCCcCHHHHHHHh----CCCCCCCCCcceEeecccccccccccccccccccccc-cccCCCCCCC Confidence 99999999999999999876 4444322111110000000 000 00000010011 1112222222 No 225 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=88.83 E-value=0.03 Score=28.94 Aligned_cols=378 Identities=13% Similarity=0.081 Sum_probs=169.3 Q ss_pred CCCChhh------h-----hhhhHHhhcccCCCCC-CChHHHHHHHHHHHHHHHhcCChhheEeee--cCCccccccccc Q lcl|Aclame:pro 1 MGQDKRQ------Y-----GSTQQLRAGEANFPNA-VTDFDKARLASYRLYEDMYLTNTSDYQVIL--RGGDEGDQRPIY 66 (527) Q Consensus 1 m~~~~~q------y-----~~~~~~~~~~~~~~~~-v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~--~g~d~~~~~~~~ 66 (527) |=++++. . +-...++++.....+. |+.+.--|+.+..-|-++=.+.-.++-..+ +.++ +. T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~--~~---- 74 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGE--DR---- 74 (419) T ss_pred CcccccccccccccccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCC--cc---- Confidence 4444321 1 1112344333322222 333322333333333333323222221111 0000 00 Q ss_pred CCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcC--ch-hhH-HHHhHhhhhcccEEEEEEecCCCCCccce Q lcl|Aclame:pro 67 VPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDREN--WE-QKF-ESLKRWTEIRGDYVLLLIGDDEKDEGSRL 142 (527) Q Consensus 67 ~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~--l~-~k~-~~~~r~a~~~GDav~~i~~d~~k~~~~r~ 142 (527) +.+.+.. +...|. .+=| |. ..| .......++.|.++..|.+|.. |+=+ T Consensus 75 ----~~~~~~~------------------l~~lL~---~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~---G~~~ 126 (419) T protein:vir:14 75 ----KPATDHP------------------LYSILK---YEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSD---GVIQ 126 (419) T ss_pred ----ccccccH------------------HHHHHH---hhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCC---CcEE Confidence 0000111 111111 1111 11 112 2335566778999989988852 2223 Q ss_pred EEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccc Q lcl|Aclame:pro 143 SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDR 222 (527) Q Consensus 143 ~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~ 222 (527) .+..++|..+-+..+.+.. +.|. .....+ + T Consensus 127 ~l~pl~~~~v~v~~~~~~~---------------------------~~y~-~~~~~~--~-------------------- 156 (419) T protein:vir:14 127 GLYPLDNEAVTVMRGSDLK---------------------------PVYR-VRGSDP--M-------------------- 156 (419) T ss_pred EEEEecCceEEEEECCCce---------------------------EEEE-EccCcc--c-------------------- Confidence 4666777766554433310 0110 000000 0 Q ss_pred ccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE- Q lcl|Aclame:pro 223 PESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA- 301 (527) Q Consensus 223 ~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~- 301 (527) +.+ =|+|+++.+. +..+|.|-++-+...++.......-......-.+.|-.+ T Consensus 157 ------------------------~~~--~i~h~~~~~~-dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil 209 (419) T protein:vir:14 157 ------------------------PQR--LVHHVRWMSI-NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI 209 (419) T ss_pred ------------------------chh--heeEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEE Confidence 000 1577776543 457888877665555544333322222222235566333 Q ss_pred -eccCCC--cCCC--Ccc-ccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccc Q lcl|Aclame:pro 302 -TDSAPP--RDSR--GNM-VPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGV 369 (527) Q Consensus 302 -~~g~~~--~d~~--G~~-~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~ 369 (527) +.+... .+.+ -+. ..|+ -.-|.++-++.+-+|..++..++-..+.+..+...+.|+..=++|..-+|. T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~ 289 (419) T protein:vir:14 210 ERPKDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNE 289 (419) T ss_pred EecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcC Confidence 322211 0110 000 0111 123566668888899999976666667788888889999999999999996 Q ss_pred ccccccccHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC Q lcl|Aclame:pro 370 VDAAVAESGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN 443 (527) Q Consensus 370 ~d~s~a~SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D 443 (527) .+.++- |++. ++-.+.|++. .+++. +-.++| .........+.+.+...+-.| T Consensus 290 ~~~~t~-s~~E~~~~~f~~~~L~P~~~-----------~ie~~---l~~kll-------~~~~~~~~~i~fd~~~l~r~d 347 (419) T protein:vir:14 290 LERATF-SNIEHQSLQFVIYTLLPWVK-----------RHEQA---KTRDLL-------LPSERKQYFIEYNLAGLLRGD 347 (419) T ss_pred CCCCCc-ccHHHHHHHHHHHHHHHHHH-----------HHHHH---Hhhhcc-------CccccCCeEEEEechhhhccC Confidence 654332 2211 1111222211 11111 111111 111112234566677878889 Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccc--cccCCCC-cccccc Q lcl|Aclame:pro 444 NEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQM--AAEQGIP-DEEDDQ 520 (527) Q Consensus 444 ~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~--~~d~g~~-d~~~~~ 520 (527) .++.++...+++++|+++.-++.+++ |.+|-+. -.. .... .+...... ..+.|.+ +..... T Consensus 348 ~~~~~~~~~~~~~~G~~T~NE~R~~~----gl~p~~g-GD~---~~~~--------~n~~~~~~~~~~~~~~~~~~~~~~ 411 (419) T protein:vir:14 348 QSSRYAAYAVGRQWGWLSINDIRRLE----NMPPVKG-GDI---YLSP--------MNMVDASKPQQLPVGKSEPTKAAI 411 (419) T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCCC-cCe---eeec--------cccccccccccccCCCCCCccccc Confidence 99999999999999999999999876 4444322 110 0000 01111000 1112222 234444 Q ss_pred cCCCCCC Q lcl|Aclame:pro 521 ALNGQPL 527 (527) Q Consensus 521 ~~~~~~~ 527 (527) .++++-| T Consensus 412 ~e~~~~l 418 (419) T protein:vir:14 412 DEIGRIL 418 (419) T ss_pred cchhccc Confidence 5556666 No 226 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=86.13 E-value=0.048 Score=27.83 Aligned_cols=389 Identities=14% Similarity=0.049 Sum_probs=159.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.=.+.+-+.-..|-.... .-++..---|..+..-|-++-.+.-.++-..+...+ +++..+...-. T Consensus 1 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~-----------~~~~~~~~l~~ 66 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSADSV---FGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPD-----------GELDELHPLSQ 66 (723) T ss_pred CcccccCCCcccccccccc---ccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCC-----------CccchhhHHHH Confidence 6555555544433321111 112222233444444444444444444333331111 11111111111 Q ss_pred hccCccccccCcchh--HHHHHHHHHHhcCchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEEecC Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAK--VDDAIRVLFDRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPYEDP 158 (527) Q Consensus 81 Lg~~~~~~i~~~~~~--v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~~d~ 158 (527) | ++ ..+|.. -.++++ ......+..|.|+..|..+.+...|.-+.+..++|......... T Consensus 67 l-L~-----~~PN~~~t~~~f~~-------------~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~ 127 (723) T protein:vir:94 67 L-WN-----VMPNRAMPAQVLKA-------------LSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATR 127 (723) T ss_pred H-Hh-----hCCCCCCCHHHHHH-------------HHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecC Confidence 1 10 011111 122222 22334566799987777654222222223333443322222111 Q ss_pred CCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccC Q lcl|Aclame:pro 159 RYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTL 238 (527) Q Consensus 159 d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~ 238 (527) +... |. -.+.+.|+-. ..+|. T Consensus 128 ~~~~----------~~----------~~~~~~y~~~-~~~G~-------------------------------------- 148 (723) T protein:vir:94 128 AADA----------VP----------QAQIIGYVIE-RTDGV-------------------------------------- 148 (723) T ss_pred CCcc----------ce----------eeeeeEEEEE-ecCce-------------------------------------- Confidence 1000 00 0001111100 00010 Q ss_pred cccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCceEEeccCCCcCC----- Q lcl|Aclame:pro 239 TEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLGFYATDSAPPRDS----- 310 (527) Q Consensus 239 ~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P~~~~~g~~~~d~----- 310 (527) .. +++ .==|+||++..+.+...|.|-|+-+. +.|+-.++-......| .+.|-.+++-. ..++ T Consensus 149 -~~-~~~----~~dIiHir~~~~~dg~~G~Spi~~a~---~~i~~~~aa~~~~~~~f~NG~~p~giL~~~-~l~~e~~~~ 218 (723) T protein:vir:94 149 -RV-PVL----ADEMLWLRFSDPYDPLAVMAPWKAAR---AAVDADFYAATWQRQSFKNGARPGGVVNLG-DMDEQTFTK 218 (723) T ss_pred -eE-Eec----ccceEEecCCCCCCCcccccHHHHHH---HHHHHHHHHHHHHHHHHhcCCCcceEEEcC-CCCHHHHHH Confidence 00 000 00278888765556778888766544 4443333333333333 33453333211 1111 Q ss_pred --------------CCcccceecCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccc Q lcl|Aclame:pro 311 --------------RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAE 376 (527) Q Consensus 311 --------------~G~~~p~~v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~ 376 (527) .|++.-+.-.-+.+.-++++-+|..++..+.=..|.+..+...+.|...=++|...+|. +++. T Consensus 219 ~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~-~st~-- 295 (723) T protein:vir:94 219 TVAAFRSQVEGVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLG-GSTY-- 295 (723) T ss_pred HHHHHHHHhhchhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCC-CCCc-- Confidence 12211110011222234566688999876666668888888889999999999987763 2221 Q ss_pred cHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCC--CCCCCHHHHH Q lcl|Aclame:pro 377 SGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRD--PKPVNNEKRF 448 (527) Q Consensus 377 SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d--~lP~D~~~~i 448 (527) |.++ ++..+.|++ ..+++.+ -..+++.+ ...+.+.|+. .+-.|.++.+ T Consensus 296 sN~e~~~~~f~~~tL~P~~-----------~~ie~~l---n~~Ll~~~----------g~~~~~~f~~~~lLr~D~~~r~ 351 (723) T protein:vir:94 296 ENQAEAKAAVWTETLIPQM-----------EVMASIT---DLQLLPDI----------GWTVEWDFNSVPALQEDLEAQA 351 (723) T ss_pred ccHHHHHHHHHHHHHHHHH-----------HHHHHHH---hHhhcccc----------cCceEEeecchhhhhcCHHHHH Confidence 1111 111122221 2222222 21222211 1124556654 4667999999 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC-------Cccccccc Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI-------PDEEDDQA 521 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~-------~d~~~~~~ 521 (527) +...+++++|+++..++.++| |.+|-+.-.... -...-. ...+.+++-. -+..+|. +-.+.|+. T Consensus 352 ~~~~~~v~~G~~T~NE~R~~l----glpPi~gGd~~~-~~~p~~--~~~a~~~~~~--p~~~e~~~~~~~~~~~~~~~~p 422 (723) T protein:vir:94 352 GRNQGYLVNDVLMVDEVRATI----GLDPLPGGIGQM-TLTPYR--AQFAPAPAPA--PAVEEGAARMLALLERVAADRP 422 (723) T ss_pred HHHHHHHhCCCcCHHHHHHHh----CCCCCCCCcccc-eecccc--ccccCCCCCC--ccchhhhHhhhhhccccccccC Confidence 999999999999999999876 444432211110 000000 0011111100 0011110 11122333 Q ss_pred CCCCCC Q lcl|Aclame:pro 522 LNGQPL 527 (527) Q Consensus 522 ~~~~~~ 527 (527) ..+.|. T Consensus 423 ~~~~~~ 428 (723) T protein:vir:94 423 LPELPV 428 (723) T ss_pred cCCCCC Confidence 333344 No 227 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=85.77 E-value=0.05 Score=27.70 Aligned_cols=377 Identities=9% Similarity=0.091 Sum_probs=158.6 Q ss_pred CCCChhhhhhhh-HHhhcccC-------------CCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccccc Q lcl|Aclame:pro 1 MGQDKRQYGSTQ-QLRAGEAN-------------FPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIY 66 (527) Q Consensus 1 m~~~~~qy~~~~-~~~~~~~~-------------~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~ 66 (527) ||.--.-=-..+ .|+..... .+..+.. .. +-+.++|.+.-.. . .. T Consensus 1 ~~~~~~~~~~~~m~~F~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~---~-----------~~ 59 (413) T protein:vir:96 1 MPGVSEIRKDKNLKFFNNKRSPTEESKAKDEIPKAPQVVMT-LP------NFFKELISDGYTK---L-----------SD 59 (413) T ss_pred CCccchhhhhhcCCccccCCCcchhhhhhcccccccccccc-ch------hhHhhhccchhHH---H-----------hh Confidence 332110000000 22222111 1111110 00 1122222211000 0 00 Q ss_pred CCchhHHHHhhhhhhccCccccc---cCcchh-HHHHH-HHHHHhcC--c--hhhHHHHhHhhhhcccEEEEEEecCCCC Q lcl|Aclame:pro 67 VPNGEKLIEAKMRFLGQGLKWEF---SKKDAK-VDDAI-RVLFDREN--W--EQKFESLKRWTEIRGDYVLLLIGDDEKD 137 (527) Q Consensus 67 ~p~~~k~v~~~~~~Lg~~~~~~i---~~~~~~-v~~~l-r~w~~~e~--l--~~k~~~~~r~a~~~GDav~~i~~d~~k~ 137 (527) -|.....|+.+++-++ ..+..+ +..+.+ ....+ .-+..+-| + ..-........++.|.|+..+..|.. T Consensus 60 ~~~v~~cI~~ia~~ia-~~~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~-- 136 (413) T protein:vir:96 60 SPEVRMAVDCIADLVS-NMTIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVS-- 136 (413) T ss_pred chHHHHHHHHHHHhhc-cCceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCC-- Confidence 1222234444333331 112222 111111 11111 11222222 2 23345667777888999988888752 Q ss_pred Cccce-EEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccc Q lcl|Aclame:pro 138 EGSRL-SLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEP 216 (527) Q Consensus 138 ~~~r~-~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~ 216 (527) |.+| .+..++|..+-+..+++. +.+++++ .. +.. T Consensus 137 -g~~~~~L~~l~~~~v~~~~~~~~------------------------~~y~~~~----~~-~~~--------------- 171 (413) T protein:vir:96 137 -GDKIIGLTPISPYKVTFNVSDDD------------------------LDYSITF----DN-KEY--------------- 171 (413) T ss_pred -CCceEEEEEecCceeEEEEcCCe------------------------EEEEEee----cC-cEE--------------- Confidence 3344 467777776655443320 0011111 00 000 Q ss_pred ccccccccccccccceeeeccCcccccccccccccceEeeCC-CCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 217 GKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRG-HPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFG 295 (527) Q Consensus 217 g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN-~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~ 295 (527) . .==|+||+- ..+.....|.|-++-+...+...+..-.-......-. T Consensus 172 ---~-----------------------------~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng 219 (413) T protein:vir:96 172 ---D-----------------------------PSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASE 219 (413) T ss_pred ---c-----------------------------hhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 0 011678873 3344556688877666665555544433344444445 Q ss_pred CCceEEeccCCCcCCCC-c--cccee------cCCCeeEecCCCCce-EEe-ccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 296 GLGFYATDSAPPRDSRG-N--MVPWT------ISPLGMVEHGQNNKI-YRV-NGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 296 g~P~~~~~g~~~~d~~G-~--~~p~~------v~pg~~~el~~~~k~-~~l-d~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) |.|-..++.....+++. + ...|+ -+-|.++-++.++.+ ..+ ...+.=..+.+..+...+.|+..=++|+ T Consensus 220 ~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~ 299 (413) T protein:vir:96 220 YMPNLIVSVDSDSDELSDEEGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPA 299 (413) T ss_pred CCccEEEEeCCCCCHHHHHHHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 56754443322222110 0 01111 112444445555443 333 2222334466777788889999999999 Q ss_pred hhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCH Q lcl|Aclame:pro 365 IAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNN 444 (527) Q Consensus 365 va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~ 444 (527) .-+|.-+.+....-.-++-.+.|++. .+++. +.++| +.. ...+++.+...+-.|. T Consensus 300 ~~lg~~~~~~~~~~~~~~~~l~P~~~-----------~ie~~----ln~~l-------l~~---~~~~~fd~~~ll~~d~ 354 (413) T protein:vir:96 300 FLLGVGTYNKDEFNNFINTKIMSIAQ-----------VIQQT----YNKLI-------VEE---DMYFSLNPRSLYNYSL 354 (413) T ss_pred HHcCCCcchHHHHHHHHHHHHHHHHH-----------HHHHH----HHHhh-------CCC---CcEEEEechhhhccCH Confidence 99984322211111111222222221 11121 11111 111 2345667778888899 Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCCC Q lcl|Aclame:pro 445 EKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNG 524 (527) Q Consensus 445 ~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~~ 524 (527) ++.++...+++.+|+++.-++.++| |.+|-+ .-.+. .-. .+-.. ..+.|. . ....++. T Consensus 355 ~~~~~~~~~~~~~G~~t~NE~R~~~----g~~p~~-~gd~~---~~~--------~n~~~---~~~~~~--~-~~~~~~d 412 (413) T protein:vir:96 355 TEMVSAGAQMTQLNALRRNEFRNWV----GMPPDA-EMDDL---LVL--------ENYLQ---QKDLVN--Q-KKLIQDE 412 (413) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCC-Cccee---eec--------ccccc---hhhccc--c-cCCCCCC Confidence 9999999999999999999999876 555432 21111 000 00000 000000 0 0001111 Q ss_pred C Q lcl|Aclame:pro 525 Q 525 (527) Q Consensus 525 ~ 525 (527) + T Consensus 413 t 413 (413) T protein:vir:96 413 T 413 (413) T ss_pred C Confidence 1 No 228 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=85.27 E-value=0.054 Score=27.53 Aligned_cols=373 Identities=13% Similarity=0.088 Sum_probs=152.4 Q ss_pred CCCChhhhh-----------hhhHHhhcccCCCCC--CChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccC Q lcl|Aclame:pro 1 MGQDKRQYG-----------STQQLRAGEANFPNA--VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYV 67 (527) Q Consensus 1 m~~~~~qy~-----------~~~~~~~~~~~~~~~--v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~ 67 (527) |++=-.-++ ++.+|..|.-++... -+..-..|-.....+...- +.+..... ..|..-......-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~t~~~~~~~ 78 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWS-GYPESWAT-PSWGSAQDKLRTLI 78 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccc-cccccccc-cCccccchhhHhhh Confidence 444322222 122222221111000 0001111111111111110 00000000 00111000000001 Q ss_pred CchhHHHHhhhhhhcc---CccccccCcchhHHHHHHHHHHhcC--ch-hhHHHHhHhhhhcccEEE-EEEecCCCCCcc Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQ---GLKWEFSKKDAKVDDAIRVLFDREN--WE-QKFESLKRWTEIRGDYVL-LLIGDDEKDEGS 140 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~---~~~~~i~~~~~~v~~~lr~w~~~e~--l~-~k~~~~~r~a~~~GDav~-~i~~d~~k~~~~ 140 (527) ..|-++++++.- ..+..+-..+.+.++.....-.+-| +. ..|.+.--+.+.+|.+++ .+..|. .|+ T Consensus 79 ----~~v~acV~~Ia~~iA~lpl~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~l~~~lllGnay~~~i~r~~---~G~ 151 (409) T protein:vir:83 79 ----DVAWACIDLNASVLSSMPIYRMRNGRIIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQLGEAFVLPMAHGS---DGY 151 (409) T ss_pred ----HHHHHHHHHHHHhhccCceEEeeCCccccchhhhcccCCCCCCCHHHHHHHHHHHHhhCCcEEEEEEECC---CCc Confidence 122333333311 1122222222221111111111222 11 122222223345698865 455554 234 Q ss_pred ceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccc Q lcl|Aclame:pro 141 RLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWD 220 (527) Q Consensus 141 r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd 220 (527) -+.+..++|..+=+..+.++ ++.|+- . + T Consensus 152 ~~~L~pl~p~~v~v~~~~~g---------------------------~~~y~~--~--~--------------------- 179 (409) T protein:vir:83 152 PIRFRVVPPWLVNVELKKGA---------------------------RREYRI--G--G--------------------- 179 (409) T ss_pred EEEEEEECCcceEEEEcCCc---------------------------eEEEEE--c--c--------------------- Confidence 45566667665433322220 011110 0 0 Q ss_pred ccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceE Q lcl|Aclame:pro 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY 300 (527) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~ 300 (527) .. .+ -.|+|++...+.+...|.|-|+-+...++-.+..-.-......-.+.|-. T Consensus 180 -~~--------------------~~-----~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p~g 233 (409) T protein:vir:83 180 -LN--------------------VT-----DEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVPLY 233 (409) T ss_pred -cc--------------------Cc-----cceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcce Confidence 00 00 14789987766677889998877766666544332222222222445644 Q ss_pred EeccCCCcCC-CCc--cccee----cCCCeeEecCCCCceEE-eccccChHHHHHHHHHHHHHHHHhhcCchhhcccccc Q lcl|Aclame:pro 301 ATDSAPPRDS-RGN--MVPWT----ISPLGMVEHGQNNKIYR-VNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDA 372 (527) Q Consensus 301 ~~~g~~~~d~-~G~--~~p~~----v~pg~~~el~~~~k~~~-ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~ 372 (527) +++-....++ .-+ ...|+ -.-|..+-+.++.+++. +...+.=..+.+..+...+.|+..=++|.+-+|-.+. T Consensus 234 il~~~~~ls~e~~~~~~~~~~~~~~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~ 313 (409) T protein:vir:83 234 WLGVERRLSETEAVDLMDRWIESRSKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGA 313 (409) T ss_pred EeecCCCCCHHHHHHHHHHHHHhhCCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCC Confidence 4322111111 000 00111 12344444666667653 6655444457777888888999999999999995432 Q ss_pred -cccc-cHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCH Q lcl|Aclame:pro 373 -AVAE-SGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNN 444 (527) Q Consensus 373 -s~a~-SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~ 444 (527) +++. |++. ++..+.|++.+ +++.+. ..+|+ .. ..+++.+...+-.|. T Consensus 314 ~~~~tysn~eq~~~~f~~~tL~P~~~~-----------ie~~l~---~~Ll~--------~~---~~~~f~~~~llr~d~ 368 (409) T protein:vir:83 314 TGSLTYSNIEQLFSFHDRSSLRPKATA-----------VMAALD---RWALP--------SP---QHLELNRDDYTRPSL 368 (409) T ss_pred ccccccccHHHHHHHHHHHHHHHHHHH-----------HHHHHH---HhhCC--------CC---cEEEeehhhhhccCH Confidence 2221 2211 12223333221 222211 11111 11 135666777777788 Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCC Q lcl|Aclame:pro 445 EKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGI 513 (527) Q Consensus 445 ~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~ 513 (527) ++.++...++.++|+++.-++.+++ |.+| ++ -+|... .+|+ T Consensus 369 ~~r~~~~~~~~~~G~lT~NE~R~~~----glpp-~~------------------ggd~l~-----~~gv 409 (409) T protein:vir:83 369 VERATAYKIMIEAGVMEPNEARAME----RLHS-EA------------------AAVRLS-----GGGV 409 (409) T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHh----CCCC-CC------------------CCcccC-----CCCC Confidence 8889999999999999999998765 2111 10 011110 1122 No 229 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=83.69 E-value=0.066 Score=27.04 Aligned_cols=366 Identities=13% Similarity=0.086 Sum_probs=142.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.+=.+ ++++... .....+ +..+ .-+ . .. .|+ ..-.|.+++++ T Consensus 1 Mg~f~~-------lf~~~~~-~~~~~~--------------~~~~-----~~v----~--~~--~~~--~~~~v~~~i~~ 43 (395) T protein:vir:10 1 MSILEK-------IFKTRKD-ITYMLD--------------LDMI-----EDL----S--QQ--AYV--KRLAIDSCIEF 43 (395) T ss_pred Cchhhh-------hhccCcc-cccccc--------------chhc-----ccc----c--hh--hhh--hhHHHHHHHHH Confidence 665222 2222221 111111 0000 000 0 00 000 11233333333 Q ss_pred hcc---CccccccCcchhHHHHHHH-HHHhcC--ch-hhH-HHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 81 LGQ---GLKWEFSKKDAKVDDAIRV-LFDREN--WE-QKF-ESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 81 Lg~---~~~~~i~~~~~~v~~~lr~-w~~~e~--l~-~k~-~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) +.- ..+..+-..+...+..+-. +-.+-| |. ..| .....+-+..|.+++.+.++ . .++. .++-.. T Consensus 44 Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~---~~~~---~~~~~~ 115 (395) T protein:vir:10 44 VARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--K---ELLI---ADSFYR 115 (395) T ss_pred HHHhhccceeEeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--C---CeEe---cCCccc Confidence 321 1122222222222222211 111111 11 122 22333444445544444333 1 1111 111000 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccce Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) .+..+ + |+ +..+... .. ..+..+ T Consensus 116 ----------~~~~~-----~--~~----------~~~~~~~-~~-------~~~~~~---------------------- 138 (395) T protein:vir:10 116 ----------EEYAL-----Y--DD----------IFKDVTV-KD-------YTYQRT---------------------- 138 (395) T ss_pred ----------eeEee-----c--Cc----------ceeEEEE-cC-------ceeeee---------------------- Confidence 01111 0 00 0000000 00 000000 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCce--EEeccCCCcCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGF--YATDSAPPRDS 310 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~--~~~~g~~~~d~ 310 (527) + + -=-|+|++...+...++|.|-|+-+...++..++ .....|.|- +.+.+.. .++ T Consensus 139 -----------~--~--~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~-~~~ 195 (395) T protein:vir:10 139 -----------F--T--MQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSA-YDE 195 (395) T ss_pred -----------e--c--cccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCC-CCH Confidence 0 0 1127788766567778898877665555543322 223345443 2222222 121 Q ss_pred CCc-c--cce-------ecCCCeeEecCCCCceEEecccc-----ChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 311 RGN-M--VPW-------TISPLGMVEHGQNNKIYRVNGVA-----SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 311 ~G~-~--~p~-------~v~pg~~~el~~~~k~~~ld~~~-----~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) ... . .-| .-+...++-++++-++..++..+ +...+.+..+...+.|+.+-++|.+-+|..- +++ T Consensus 196 e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~-sn~ 274 (395) T protein:vir:10 196 KNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGET-ADL 274 (395) T ss_pred HHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcc-cCH Confidence 000 0 001 12234456688888888887543 2346889999999999999999999998321 111 Q ss_pred ccHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 376 ESGIAL---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLL 452 (527) Q Consensus 376 ~SG~AL---ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v 452 (527) +...+ +-.+.|++. .+++. +-..++..-+ ....+++.+...+-.|.++.++... T Consensus 275 -e~~~~~~~~~~l~P~~~-----------~ie~~---l~~kL~~~~~--------~~~~~~f~~~~l~~~D~~~~~~~~~ 331 (395) T protein:vir:10 275 -EKNTLVFEKFCLTPLLK-----------KIQNE---LNAKLITQSM--------YLKDTRIEIVGVNKKDPLQYAEAID 331 (395) T ss_pred -HHHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcChhh--------hcccceecchhhhccCHHHHHHHHH Confidence 10000 111222211 12121 1111221111 0111345566777889999999999 Q ss_pred HHHhcCCccHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 453 ELWEAGLIPAKKLTEELSKIMGFELTEED-FRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 453 ~l~~aGlls~~ta~~~L~~~g~~~~~e~~-~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +++.+|+++.-++.+++ |.+|-++. .++..--......+...-.+..+....-.+|.+++.+| T Consensus 332 ~~~~~G~lt~NE~R~~~----g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 332 KLVSSGSFTRNEVRIML----GEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred HHHhCCCcCHHHHHHHh----CCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 99999999999999876 44543321 11100000000000001112222222222333333333 No 230 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=83.69 E-value=0.066 Score=27.04 Aligned_cols=366 Identities=13% Similarity=0.086 Sum_probs=142.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.+=.+ ++++... .....+ +..+ .-+ . .. .|+ ..-.|.+++++ T Consensus 1 Mg~f~~-------lf~~~~~-~~~~~~--------------~~~~-----~~v----~--~~--~~~--~~~~v~~~i~~ 43 (395) T protein:vir:10 1 MSILEK-------IFKTRKD-ITYMLD--------------LDMI-----EDL----S--QQ--AYV--KRLAIDSCIEF 43 (395) T ss_pred Cchhhh-------hhccCcc-cccccc--------------chhc-----ccc----c--hh--hhh--hhHHHHHHHHH Confidence 665222 2222221 111111 0000 000 0 00 000 11233333333 Q ss_pred hcc---CccccccCcchhHHHHHHH-HHHhcC--ch-hhH-HHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 81 LGQ---GLKWEFSKKDAKVDDAIRV-LFDREN--WE-QKF-ESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 81 Lg~---~~~~~i~~~~~~v~~~lr~-w~~~e~--l~-~k~-~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) +.- ..+..+-..+...+..+-. +-.+-| |. ..| .....+-+..|.+++.+.++ . .++. .++-.. T Consensus 44 Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~---~~~~---~~~~~~ 115 (395) T protein:vir:10 44 VARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--K---ELLI---ADSFYR 115 (395) T ss_pred HHHhhccceeEeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--C---CeEe---cCCccc Confidence 321 1122222222222222211 111111 11 122 22333444445544444333 1 1111 111000 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccce Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) .+..+ + |+ +..+... .. ..+..+ T Consensus 116 ----------~~~~~-----~--~~----------~~~~~~~-~~-------~~~~~~---------------------- 138 (395) T protein:vir:10 116 ----------EEYAL-----Y--DD----------IFKDVTV-KD-------YTYQRT---------------------- 138 (395) T ss_pred ----------eeEee-----c--Cc----------ceeEEEE-cC-------ceeeee---------------------- Confidence 01111 0 00 0000000 00 000000 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCce--EEeccCCCcCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGF--YATDSAPPRDS 310 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~--~~~~g~~~~d~ 310 (527) + + -=-|+|++...+...++|.|-|+-+...++..++ .....|.|- +.+.+.. .++ T Consensus 139 -----------~--~--~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~-~~~ 195 (395) T protein:vir:10 139 -----------F--T--MQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSA-YDE 195 (395) T ss_pred -----------e--c--cccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCC-CCH Confidence 0 0 1127788766567778898877665555543322 223345443 2222222 121 Q ss_pred CCc-c--cce-------ecCCCeeEecCCCCceEEecccc-----ChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 311 RGN-M--VPW-------TISPLGMVEHGQNNKIYRVNGVA-----SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 311 ~G~-~--~p~-------~v~pg~~~el~~~~k~~~ld~~~-----~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) ... . .-| .-+...++-++++-++..++..+ +...+.+..+...+.|+.+-++|.+-+|..- +++ T Consensus 196 e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~-sn~ 274 (395) T protein:vir:10 196 KNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGET-ADL 274 (395) T ss_pred HHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcc-cCH Confidence 000 0 001 12234456688888888887543 2346889999999999999999999998321 111 Q ss_pred ccHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 376 ESGIAL---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLL 452 (527) Q Consensus 376 ~SG~AL---ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v 452 (527) +...+ +-.+.|++. .+++. +-..++..-+ ....+++.+...+-.|.++.++... T Consensus 275 -e~~~~~~~~~~l~P~~~-----------~ie~~---l~~kL~~~~~--------~~~~~~f~~~~l~~~D~~~~~~~~~ 331 (395) T protein:vir:10 275 -EKNTLVFEKFCLTPLLK-----------KIQNE---LNAKLITQSM--------YLKDTRIEIVGVNKKDPLQYAEAID 331 (395) T ss_pred -HHHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcChhh--------hcccceecchhhhccCHHHHHHHHH Confidence 10000 111222211 12121 1111221111 0111345566777889999999999 Q ss_pred HHHhcCCccHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 453 ELWEAGLIPAKKLTEELSKIMGFELTEED-FRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 453 ~l~~aGlls~~ta~~~L~~~g~~~~~e~~-~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +++.+|+++.-++.+++ |.+|-++. .++..--......+...-.+..+....-.+|.+++.+| T Consensus 332 ~~~~~G~lt~NE~R~~~----g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 332 KLVSSGSFTRNEVRIML----GEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred HHHhCCCcCHHHHHHHh----CCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 99999999999999876 44543321 11100000000000001112222222222333333333 No 231 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=83.69 E-value=0.066 Score=27.04 Aligned_cols=366 Identities=13% Similarity=0.086 Sum_probs=142.9 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.+=.+ ++++... .....+ +..+ .-+ . .. .|+ ..-.|.+++++ T Consensus 1 Mg~f~~-------lf~~~~~-~~~~~~--------------~~~~-----~~v----~--~~--~~~--~~~~v~~~i~~ 43 (395) T protein:vir:95 1 MSILEK-------IFKTRKD-ITYMLD--------------LDMI-----EDL----S--QQ--AYV--KRLAIDSCIEF 43 (395) T ss_pred Cchhhh-------hhccCcc-cccccc--------------chhc-----ccc----c--hh--hhh--hhHHHHHHHHH Confidence 665222 2222221 111111 0000 000 0 00 000 11233333333 Q ss_pred hcc---CccccccCcchhHHHHHHH-HHHhcC--ch-hhH-HHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 81 LGQ---GLKWEFSKKDAKVDDAIRV-LFDREN--WE-QKF-ESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 81 Lg~---~~~~~i~~~~~~v~~~lr~-w~~~e~--l~-~k~-~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) +.- ..+..+-..+...+..+-. +-.+-| |. ..| .....+-+..|.+++.+.++ . .++. .++-.. T Consensus 44 Ia~~iA~~p~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~--~---~~~~---~~~~~~ 115 (395) T protein:vir:95 44 VARAVAQSHFKVLEGNRIQKNDVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDS--K---ELLI---ADSFYR 115 (395) T ss_pred HHHhhccceeEeccCCccccchHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecC--C---CeEe---cCCccc Confidence 321 1122222222222222211 111111 11 122 22333444445544444333 1 1111 111000 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccce Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) .+..+ + |+ +..+... .. ..+..+ T Consensus 116 ----------~~~~~-----~--~~----------~~~~~~~-~~-------~~~~~~---------------------- 138 (395) T protein:vir:95 116 ----------EEYAL-----Y--DD----------IFKDVTV-KD-------YTYQRT---------------------- 138 (395) T ss_pred ----------eeEee-----c--Cc----------ceeEEEE-cC-------ceeeee---------------------- Confidence 01111 0 00 0000000 00 000000 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCce--EEeccCCCcCC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGF--YATDSAPPRDS 310 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~--~~~~g~~~~d~ 310 (527) + + -=-|+|++...+...++|.|-|+-+...++..++ .....|.|- +.+.+.. .++ T Consensus 139 -----------~--~--~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~-~~~ 195 (395) T protein:vir:95 139 -----------F--T--MQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSA-YDE 195 (395) T ss_pred -----------e--c--cccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCC-CCH Confidence 0 0 1127788766567778898877665555543322 223345443 2222222 121 Q ss_pred CCc-c--cce-------ecCCCeeEecCCCCceEEecccc-----ChHHHHHHHHHHHHHHHHhhcCchhhccccccccc Q lcl|Aclame:pro 311 RGN-M--VPW-------TISPLGMVEHGQNNKIYRVNGVA-----SLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVA 375 (527) Q Consensus 311 ~G~-~--~p~-------~v~pg~~~el~~~~k~~~ld~~~-----~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a 375 (527) ... . .-| .-+...++-++++-++..++..+ +...+.+..+...+.|+.+-++|.+-+|..- +++ T Consensus 196 e~~~~~~~~~~~~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~~~~-sn~ 274 (395) T protein:vir:95 196 KNIEKLQAFTNKLFNTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIYGET-ADL 274 (395) T ss_pred HHHHHHHHHHHHHhccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhcCcc-cCH Confidence 000 0 001 12234456688888888887543 2346889999999999999999999998321 111 Q ss_pred ccHHHH---HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHH Q lcl|Aclame:pro 376 ESGIAL---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLL 452 (527) Q Consensus 376 ~SG~AL---ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v 452 (527) +...+ +-.+.|++. .+++. +-..++..-+ ....+++.+...+-.|.++.++... T Consensus 275 -e~~~~~~~~~~l~P~~~-----------~ie~~---l~~kL~~~~~--------~~~~~~f~~~~l~~~D~~~~~~~~~ 331 (395) T protein:vir:95 275 -EKNTLVFEKFCLTPLLK-----------KIQNE---LNAKLITQSM--------YLKDTRIEIVGVNKKDPLQYAEAID 331 (395) T ss_pred -HHHHHHHHHHHHHHHHH-----------HHHHH---HHHhhcChhh--------hcccceecchhhhccCHHHHHHHHH Confidence 10000 111222211 12121 1111221111 0111345566777889999999999 Q ss_pred HHHhcCCccHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 453 ELWEAGLIPAKKLTEELSKIMGFELTEED-FRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 453 ~l~~aGlls~~ta~~~L~~~g~~~~~e~~-~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +++.+|+++.-++.+++ |.+|-++. .++..--......+...-.+..+....-.+|.+++.+| T Consensus 332 ~~~~~G~lt~NE~R~~~----g~~p~~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 332 KLVSSGSFTRNEVRIML----GEEPSDNPELDEYLITKNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred HHHhCCCcCHHHHHHHh----CCCCCCCCCCceeeeccccccccccccccCcccccccCCCCCCCCCC Confidence 99999999999999876 44543321 11100000000000001112222222222333333333 No 232 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=83.62 E-value=0.067 Score=27.02 Aligned_cols=392 Identities=13% Similarity=0.080 Sum_probs=147.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |.+ +++- ..++..... .+|..-.-+.. ..+.+. +..+-....+| +|-.+|-..++- T Consensus 1 m~~-----------~~~~---~~~~~~~~~---~~~~~~~~~~~-~~g~~~----~~~Al~~~~V~--~cv~~ia~~iA~ 56 (417) T protein:vir:38 1 MKL-----------FRGL---ATEVDPHWA---DHLLDSGVIPS-FRGGYL----GISALRNSDVL--TAVSIVSGDVSR 56 (417) T ss_pred Ccc-----------cccc---ccCCCccch---hhhcccccccc-cCCcee----chhhcccHHHH--HHHHHHHHhhcc Confidence 333 1111 112222211 11110000000 001110 01111111222 233333332222 Q ss_pred hccCcccccc--CcchhHH-HHHHH-HHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceE Q lcl|Aclame:pro 81 LGQGLKWEFS--KKDAKVD-DAIRV-LFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTY 152 (527) Q Consensus 81 Lg~~~~~~i~--~~~~~v~-~~lr~-w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~ 152 (527) | +..+- ..++.+. ..+.. +-.+-| |. .-........++.|.|+..|..|...+ .-..+..++|.++ T Consensus 57 l----p~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~--~~~~l~~l~p~~v 130 (417) T protein:vir:38 57 F----PLVITDSSTDEVIDLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITN--EPAMFEFYAPSQT 130 (417) T ss_pred C----eeEEEEcCCcceeccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCC--EEEEEEEeCCceE Confidence 2 22221 1111111 11111 112222 11 222344556677899998888775332 2223455666665 Q ss_pred EEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccce Q lcl|Aclame:pro 153 FPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDI 232 (527) Q Consensus 153 fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~ 232 (527) -+..++++ + +.|.-...+ +....+ T Consensus 131 ~v~~~~~~--~-------------------------~~y~~~~~~-------~~~~~~---------------------- 154 (417) T protein:vir:38 131 QVDTSDPD--N-------------------------IIYRFTPYN-------SSMQKV---------------------- 154 (417) T ss_pred EEEEcCCC--e-------------------------EEEEEEEcC-------CcEEEE---------------------- Confidence 54332221 0 011100000 000000 Q ss_pred eeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCCceEEeccCCCcC Q lcl|Aclame:pro 233 KKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGLGFYATDSAPPRD 309 (527) Q Consensus 233 ~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~P~~~~~g~~~~d 309 (527) + + .+ =|+||++.+ .+...|.|-|+-+...+.. ..+-......| .+.|-.+++.....+ T Consensus 155 --~---------~--~~--dviH~r~~~-~d~~~G~s~l~~~~~~i~~---~~~~~~~~~~~f~ng~~p~~il~~~~~l~ 215 (417) T protein:vir:38 155 --C---------G--FE--DVIHWKFFS-YDTIMGRSPLLSLGDEIGL---QESGVSTLQKFFKSGLKGSIIKAKESRLS 215 (417) T ss_pred --e---------c--Cc--ceEEecCCC-CCCccccCHHHHHHHHHHH---HHHHHHHHHHHHhccCCCcEEEEeCCCCC Confidence 0 0 00 168898764 3456788866554444333 23223333332 345643332211122 Q ss_pred CCC-cc--ccee-----cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHH Q lcl|Aclame:pro 310 SRG-NM--VPWT-----ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIAL 381 (527) Q Consensus 310 ~~G-~~--~p~~-----v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~AL 381 (527) ++. +. .-|+ ..-|.++-++.+.+|..++..+.-..+.+..+...+.|+..=++|++-+|. .+...| + T Consensus 216 ~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~--~~~~s~---~ 290 (417) T protein:vir:38 216 AEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ--NSPNQS---V 290 (417) T ss_pred HHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC--CCcchh---H Confidence 100 00 0110 123455557888899999877666668888888889999999999999982 221111 1 Q ss_pred HHHhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 382 DLKLSAILSSCAEQELELK-SVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLI 460 (527) Q Consensus 382 ql~~~PLlakv~~krl~~~-~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~aGll 460 (527) + ++...|. ..+.-. +.++-..+...++.... .....+.|... ..+. .-+.++.+++.+|++ T Consensus 291 e-----------~~~~~~~~~tl~P~----~~~ie~~l~~~Ll~~~~-~~~~~~~fd~~-~l~~-~~~~~~~~~~~~G~~ 352 (417) T protein:vir:38 291 K-----------QLADDYIRNDLPFY----FEPITSEFELKLLDDAQ-RHQYCIGFDTK-SVNG-LPIADVNTAVNGGLW 352 (417) T ss_pred H-----------HHHHHHHHHHHHHH----HHHHHHHHHhhhcChhh-cccceEEechh-hhhH-HHHHHHHHHHhCCCc Confidence 1 1111111 111111 11111111111111100 01123445321 2222 224567889999999 Q ss_pred cHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcc----cccccCCCC Q lcl|Aclame:pro 461 PAKKLTEELSKIMGFELT-EEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDE----EDDQALNGQ 525 (527) Q Consensus 461 s~~ta~~~L~~~g~~~~~-e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~----~~~~~~~~~ 525 (527) +.-++.++| |.+|- ..+..+.....--.-++....... .......+|.+.+ ..++...++ T Consensus 353 T~NE~R~~~----gl~pi~~g~~d~~~~~~n~~~~d~~~~~~~-~~~~~~kgg~~~~~~~~~~~~~~~~~ 417 (417) T protein:vir:38 353 TGNEGRAEL----GKKPLKDPNMDRIQSTLNTVFLDQKEAYQA-EHAAELKGGDTNAKGNQNGSGTNANS 417 (417) T ss_pred CHHHHHHHh----CCCCCCCCCCCeeeeccccccccccccccc-ccccccCCCCCCCCCCCcCCCCcCCC Confidence 999999877 44442 222111000000000000000000 0011111222222 222333333 No 233 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=83.59 E-value=0.067 Score=27.01 Aligned_cols=378 Identities=12% Similarity=0.069 Sum_probs=141.4 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCccccccccc-CCchhHHHHhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIY-VPNGEKLIEAKMR 79 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~-~p~~~k~v~~~~~ 79 (527) |+.= .|++..... +.+.+ + .-|..+..... ...++.. ... .|.-...|+.+++ T Consensus 1 Mg~~--------~~f~~k~~~-~~~~~--------~---~~~~~~~~~~~-~~~~~~~-----~~~~~~~V~~~I~~ia~ 54 (403) T protein:vir:80 1 MGLF--------NFFRRKTRS-EPTNA--------I---SWFLTQEAYDT-LAIPGYT-----RLSDNPEVRMAVHKIAE 54 (403) T ss_pred Cccc--------ccccccccc-cccch--------h---hhhcccccccc-cccchhh-----hhhhhHHHHHHHHHHHH Confidence 6642 122222220 00110 0 00111110000 0000100 010 1112233444433 Q ss_pred hhccCccccc---cCcc-hhHHHHH-HHHHHhcCchh---hH-HHHhHhhhhcccE--EEEEEecCCCCCccceEEEEEc Q lcl|Aclame:pro 80 FLGQGLKWEF---SKKD-AKVDDAI-RVLFDRENWEQ---KF-ESLKRWTEIRGDY--VLLLIGDDEKDEGSRLSLHEVD 148 (527) Q Consensus 80 ~Lg~~~~~~i---~~~~-~~v~~~l-r~w~~~e~l~~---k~-~~~~r~a~~~GDa--v~~i~~d~~k~~~~r~~i~~vd 148 (527) -++ ..+..+ +..+ ..++..+ +.+-.+-|=.+ .| .......++.|+| +..+.+|. ++ +=+.+..++ T Consensus 55 ~iA-~~p~~~~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~-~g--~~~~L~~l~ 130 (403) T protein:vir:80 55 LIS-SMTIHLMQNTDNGDIRIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTT-SG--LIDELIPLA 130 (403) T ss_pred hhh-hCceEEEEecCCceeecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcC-CC--cEEEEEEEc Confidence 332 111211 1111 1122222 11222222111 12 2223344555554 45667764 22 233556666 Q ss_pred cceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccccccccccc Q lcl|Aclame:pro 149 PSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLE 228 (527) Q Consensus 149 P~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~ 228 (527) |..+=++.+.++ +++.|. + . .+ T Consensus 131 p~~v~~~~~~~g--------------------------~~~~y~------~------~-----------~~--------- 152 (403) T protein:vir:80 131 PSKVSFVDTDTG--------------------------YQIWYQ------G------K-----------AY--------- 152 (403) T ss_pred CCeeEEEEcCCc--------------------------eEEEEe------e------c-----------cc--------- Confidence 666544333221 111110 0 0 00 Q ss_pred ccceeeeccCcccccccccccccceEeeCCC-CCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCC Q lcl|Aclame:pro 229 PDDIKKLSTLTEEEPLPEQITTLPVFHFRGH-PIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPP 307 (527) Q Consensus 229 ~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~-~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~ 307 (527) + .=-|+||+.. .+.+...|.|-++-+...+...+....-......-.+.|-.++.-... T Consensus 153 ------------------~--~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~ 212 (403) T protein:vir:80 153 ------------------N--YDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAA 212 (403) T ss_pred ------------------c--hhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCC Confidence 0 1135788743 334445588866554444443332222222222223556433322111 Q ss_pred cC-CCCc--cccee------cCCCeeEecCCC-CceEEec-cccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccc Q lcl|Aclame:pro 308 RD-SRGN--MVPWT------ISPLGMVEHGQN-NKIYRVN-GVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAE 376 (527) Q Consensus 308 ~d-~~G~--~~p~~------v~pg~~~el~~~-~k~~~ld-~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~ 376 (527) .+ .+-+ ...|. ...|..+-++.. .++..+. ..+.=..+.+..+...+.|+.+=++|++-+|..+-++.. T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 292 (403) T protein:vir:80 213 TAELSSEEGRNAVFKKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVGKYDKDE 292 (403) T ss_pred CChHHHHHHHHHHHHHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCccHHH Confidence 11 1000 00000 112333323222 2222221 112223466788888889999999999888732222211 Q ss_pred cHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 377 SGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWE 456 (527) Q Consensus 377 SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~~ 456 (527) ..--++-.+.|++. .+++ .+..++| .. ..+.+++.....+..|.++.++...+++. T Consensus 293 ~~~f~~~~l~P~~~-----------~ie~---~l~~kll--------~~--~~~~~~f~~~~ll~~d~~~~~~~~~~~~~ 348 (403) T protein:vir:80 293 YNNFINSTILPIAK-----------GIEQ---ELTRKLL--------IS--PDLYFKFNPRSLYAYDLKELAEVGSNMYV 348 (403) T ss_pred HHHHHHHHHHHHHH-----------HHHH---HHHHhcc--------CC--CCcEEEeechhhhccCHHHHHHHHHHHHh Confidence 11111122222222 1222 1211222 11 12334555567788899999999999999 Q ss_pred cCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH-HHHHhcCcccccccccCCCCccccc Q lcl|Aclame:pro 457 AGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGI-AQAEAADPFGAQMAAEQGIPDEEDD 519 (527) Q Consensus 457 aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~-~~~aa~d~~g~~~~~d~g~~d~~~~ 519 (527) +|+++.-++.++| |.+|-+. -.+. ...--. -...++...... ++++++.+++.| T Consensus 349 ~Gi~t~NE~R~~~----gl~p~~g-gd~~---~~~~n~~pl~~~~~~~~~k-~ge~~~~~~~~~ 403 (403) T protein:vir:80 349 RGLMEGNEVRDWL----GLSPKEG-LSEL---VILENYIPLDKIGDQNKLK-GGEKGGADGQTD 403 (403) T ss_pred CCCcCHHHHHHHh----CCCCCCC-CCeE---eecccccchhhccchhhcc-CCCCCCCCCCCC Confidence 9999999998876 4444221 1110 000000 000011111111 222333333333 No 234 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=81.76 E-value=0.083 Score=26.52 Aligned_cols=204 Identities=12% Similarity=0.049 Sum_probs=87.0 Q ss_pred eeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccc Q lcl|Aclame:pro 192 MKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGL 271 (527) Q Consensus 192 ~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~L 271 (527) ++. ..+ |...++.... ..+. .+......+ +- |+||++..+...++|.|.+ T Consensus 1 ~r~-~~d------g~~~y~~~~~---~~~~---------------~g~~~~~~~---~e--ilH~r~~~~~~~~~Glspi 50 (219) T protein:vir:98 1 MRV-CKD------GNYKYLMKKS---LYDT---------------KSEIYEYNK---ND--VIFIKLYDPMQQVYGSPDY 50 (219) T ss_pred Cce-eec------CeEEEEEecc---eecC---------------CceeEEecc---cc--EEEecCCCCCCCcceecHH Confidence 111 111 2222221100 0000 011111111 11 6899987666778899976 Q ss_pred cchHHHHHHHHhhHHHHH-HHHHHhCCceEE--eccCCCcCCCCc--cccee--cCC---CeeEec-----CCCCceEEe Q lcl|Aclame:pro 272 AGLESLIASVNQTMTDED-LIMVFGGLGFYA--TDSAPPRDSRGN--MVPWT--ISP---LGMVEH-----GQNNKIYRV 336 (527) Q Consensus 272 edl~~l~deLn~~lsd~~-~i~~~~g~P~~~--~~g~~~~d~~G~--~~p~~--v~p---g~~~el-----~~~~k~~~l 336 (527) +-....+..- ....... ..-.-.+.|-.+ .++..-.++.=+ ..-|+ .|. +.|+-+ .++-+|..+ T Consensus 51 ~~a~~~i~~~-~aa~~~~~~~f~Ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~ 129 (219) T protein:vir:98 51 VGGITSALLN-SDATIFRRRYYSNGAHMGFILYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPI 129 (219) T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCCCceEEEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEc Confidence 6544333321 1111111 111124556332 333221111000 00111 111 222222 235678888 Q ss_pred ccccChHHHHHHHHHHHHHHHHhhcCchhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 337 NGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLP 416 (527) Q Consensus 337 d~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~ 416 (527) ...++=..|.+..+.-.+.|...=++|++-+|-.+.+++ ++..++ ++++.|. ..-+.-|+. T Consensus 130 ~~~~~d~qfle~rk~~~~eIa~~fgVPp~~lG~~~~~~~-~~sn~e-----------q~~~~f~-------~~tL~P~~~ 190 (219) T protein:vir:98 130 GDTGQKDEFANIKNISAQDVLTSHRFPPGLSGIIPVNTA-GLGDPL-----------KIREAYQ-------ADEVLPLQE 190 (219) T ss_pred cCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcccccCCCC-CccCHH-----------HHHHHHH-------HHHHHHHHH Confidence 776655568888888888999999999999996654332 111111 1111111 011111222 Q ss_pred hhhhhcccccccceeEEEEeCCCCCCCHH Q lcl|Aclame:pro 417 AYEGVGIDDADKKLTVTITFRDPKPVNNE 445 (527) Q Consensus 417 ~~e~v~~~~~~~~~~v~v~w~d~lP~D~~ 445 (527) +++..+......+-...+.|..+.++|.. T Consensus 191 ~ie~~ln~~~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 191 IIAESINSDYEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred HHHHHhhhhhcCCCccEEeecCcccccCC Confidence 22222111111111245679999999987 No 235 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=75.79 E-value=0.14 Score=25.22 Aligned_cols=431 Identities=12% Similarity=0.096 Sum_probs=174.8 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC----hhheEeeecCCcccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN----TSDYQVILRGGDEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~----~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~ 76 (527) -.|++.|--+++.=++.... .|+-| .||.++ -.-|+.+ .|.+.| +|.+++ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------------~~~~l-~~~~~~~F~Gy~~la~l-------aQ~~ey----r~~~~~ 131 (695) T protein:vir:36 78 SNYTPRERRAASYALDFNGT--------------SMDAL-SFVTSSGFPGFPTLVLL-------AQLPEY----RAMHEV 131 (695) T ss_pred cccCccccchhhhhhccccc--------------ccccc-hhhhccCcchHHHHHHH-------hhccch----hhHHHH Confidence 23333333333322222111 11122 244443 1111111 133333 566666 Q ss_pred hhhhhcc------------------CccccccCcch-hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEE--EEEEecCC Q lcl|Aclame:pro 77 KMRFLGQ------------------GLKWEFSKKDA-KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYV--LLLIGDDE 135 (527) Q Consensus 77 ~~~~Lg~------------------~~~~~i~~~~~-~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav--~~i~~d~~ 135 (527) ++..+=. ..+-++....+ +.-+.|..=+++=++-.++..+-+|+=.-|=++ |.|..|+. T Consensus 132 ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~ 211 (695) T protein:vir:36 132 LADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ 211 (695) T ss_pred HHHHhhcccceecccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCcc Confidence 6555511 00111111111 223455555555556678888888888888885 45655542 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEE-eeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccc Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVD-EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELY 214 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~-~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~ 214 (527) .- .... ..+|..+ ..|.+.++.-.+ -|..|+... +. .| .+.= .+ T Consensus 212 ~l-~~PL---~~~~~~I-------~kGslKGl~ViDp~~vtP~~~n----------~~-------dP--~spd-----fg 256 (695) T protein:vir:36 212 IM-DTPL---VPRPYTV-------PKGSFQGLRVVEPYWVTPNNYN----------SI-------NP--VADD-----FY 256 (695) T ss_pred cc-cccc---ccccccc-------cCcceeeeEeecccccccchhh----------hc-------cc--hhhc-----cC Confidence 10 0000 0011110 112333333221 122331100 00 00 0000 11 Q ss_pred ccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 215 EPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF 294 (527) Q Consensus 215 ~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~ 294 (527) .+..|.-. ...++.-++.... -.++|.. ..+...+||.|-.+-+.+-++.-.++.-...-.+.. T Consensus 257 kP~~y~V~-G~kIH~SRL~~f~----g~plPd~-----------LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~ 320 (695) T protein:vir:36 257 KPSTWWMI-GTEVHATRLHTIV----SRPVGDM-----------LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) T ss_pred CCceEEEe-ceEEeeeeEEEec----CCCchhh-----------hhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHh Confidence 22222210 1112221111110 0011111 123456899998888776666654443333322222 Q ss_pred hCCceEEeccCCCcCCCCcc---------cceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 295 GGLGFYATDSAPPRDSRGNM---------VPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 295 ~g~P~~~~~g~~~~d~~G~~---------~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) .....+-+........-++. .-++..-|+++ ++ .+-+|.+.+. .|+++-+-+...+.+++..|++|. T Consensus 321 ~~v~~lk~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~l-lDk~~Eefeq~st--slSGLddVi~qf~q~VAgaa~IPl 397 (695) T protein:vir:36 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILF-LDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHIPL 397 (695) T ss_pred hhHHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEE-EecCCcceEEEec--ccCCHHHHHHHHHHHHHhhhcCch Confidence 11111111111111111110 01233345544 55 4788888885 899999999999999999999999 Q ss_pred h-hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC Q lcl|Aclame:pro 365 I-AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN 443 (527) Q Consensus 365 v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D 443 (527) + -||+--.+-..||-.=.-.|=-.+...|+.+ +...+++++ ++|.+. . ++..+. ...+.|++.---+ T Consensus 398 tkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~--L~p~L~rl~-~ii~rS------~-~G~idp--di~~~fnPL~qmt 465 (695) T protein:vir:36 398 IKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA--LQQLMNDVI-VMIQLS------L-FGAVDP--SIKWQWNALRELD 465 (695) T ss_pred hhhhccCcccccccchhhHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHH------h-cCCCCC--cceEEeCCCCCcC Confidence 4 5664322222244444444544445444444 334454432 222211 1 222222 3567899766656 Q ss_pred HHHHHH-------HHHHHHhcCCccHHHHHHHHHHh--cCCCCch-HHHHHH---HHHHHHHHHHHHHhcCccccccccc Q lcl|Aclame:pro 444 NEKRFA-------QLLELWEAGLIPAKKLTEELSKI--MGFELTE-EDFRQA---TEDKKTQGIAQAEAADPFGAQMAAE 510 (527) Q Consensus 444 ~~~~i~-------~~v~l~~aGlls~~ta~~~L~~~--g~~~~~e-~~~~~~---~e~~a~~a~~~~aa~d~~g~~~~~d 510 (527) .++.++ .-+.+..+|+|+.++..++|.+- ++ |.. .|.... ..+-.....+.+--....|.+. |+ T Consensus 466 d~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~--Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~~~~-~~ 542 (695) T protein:vir:36 466 DLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGP--YAGKLDANDDPGVPADDDIDGVLTYVQRLAEGGDT-GA 542 (695) T ss_pred HHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcc--cccccccccCCCcCccchhhhhHhhhcCccccccc-CC Confidence 554443 23567789999999999988542 33 221 110000 0000000110000011111111 11 Q ss_pred CCCC-cccccccCCCCCC Q lcl|Aclame:pro 511 QGIP-DEEDDQALNGQPL 527 (527) Q Consensus 511 ~g~~-d~~~~~~~~~~~~ 527 (527) .|+. .++. -..+..++ T Consensus 543 ~~~~~~g~~-~~~~v~~~ 559 (695) T protein:vir:36 543 PGGARAGAT-APPTVANV 559 (695) T ss_pred CCccccccc-CCCccccc Confidence 1111 1111 11111111 No 236 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=72.89 E-value=0.18 Score=24.71 Aligned_cols=429 Identities=12% Similarity=0.109 Sum_probs=175.2 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCC----hhheEeeecCCcccccccccCCchhHHHHh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTN----TSDYQVILRGGDEGDQRPIYVPNGEKLIEA 76 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~----~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~ 76 (527) =.|++.|=-+++.=++.... .|+-| .||.++ -.-|+.+ .|.+.| +|.+++ T Consensus 78 ~~~~~~~~~~~~~~~~~~~~--------------~~~~l-~~~~~~~F~Gy~~la~l-------aQ~~ey----r~~~~~ 131 (695) T protein:vir:78 78 SNYTPRERRAASYALDFNGT--------------SMDAL-SFVTSSGFPGFPTLVLL-------AQLPEY----RAMHEV 131 (695) T ss_pred ccCCccccchhhhhhccccc--------------ccccc-hhhhccCcchHHHHHHH-------hhccch----hhHHHH Confidence 23333333333322222111 11122 244443 1111111 133333 566666 Q ss_pred hhhhhcc------------------CccccccCcch-hHHHHHHHHHHhcCchhhHHHHhHhhhhcccEE--EEEEecCC Q lcl|Aclame:pro 77 KMRFLGQ------------------GLKWEFSKKDA-KVDDAIRVLFDRENWEQKFESLKRWTEIRGDYV--LLLIGDDE 135 (527) Q Consensus 77 ~~~~Lg~------------------~~~~~i~~~~~-~v~~~lr~w~~~e~l~~k~~~~~r~a~~~GDav--~~i~~d~~ 135 (527) ++..+=. ..+-++....+ +--+.|..=+++=++-.++..+-+|+=.-|=++ |.|..|+. T Consensus 132 ia~e~~R~w~~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~ 211 (695) T protein:vir:78 132 LADECIRTWGEAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQ 211 (695) T ss_pred HHHHhhcccceeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCcc Confidence 6655511 00111111111 223455555555556678888888988888885 45655542 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEE-eeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccc Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVD-EYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELY 214 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~-~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~ 214 (527) .- .... ..+|..+ ..|.+.++.-.+ -|..|+... +. .| .+.= .+ T Consensus 212 ~l-~~PL---~~~~~~I-------~kGslKGl~ViDp~~vtP~~~n----------~~-------dP--~spd-----fg 256 (695) T protein:vir:78 212 IM-DTPL---VPRPYTV-------PKGSFQGLRVVEPYWVTPNNYN----------SI-------NP--VADD-----FY 256 (695) T ss_pred cc-cccc---ccccccc-------cCcceeeeEeecccccccchhh----------hc-------cc--hhhc-----cC Confidence 10 0000 0011110 112333333221 122331100 00 00 0000 11 Q ss_pred ccccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 215 EPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF 294 (527) Q Consensus 215 ~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~ 294 (527) .+..|.-. ...++.-++.... -.++|.. ..+...+||.|-.+-+.+-++.-.++.-...-.+.. T Consensus 257 kP~~y~V~-G~kIH~SRL~~f~----g~plPd~-----------LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~ 320 (695) T protein:vir:78 257 KPSTWWMI-GTEVHATRLHTIV----SRPVGDM-----------LKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQ 320 (695) T ss_pred CCceEEEe-ceEEeeeeEEEec----CCCchhh-----------hhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHh Confidence 22222210 1112221111110 0011111 123456899999888777666654443333332222 Q ss_pred hCCceEEeccCCCcCCCCcc---------cceecCCCeeEecC-CCCceEEeccccChHHHHHHHHHHHHHHHHhhcCch Q lcl|Aclame:pro 295 GGLGFYATDSAPPRDSRGNM---------VPWTISPLGMVEHG-QNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPD 364 (527) Q Consensus 295 ~g~P~~~~~g~~~~d~~G~~---------~p~~v~pg~~~el~-~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~ 364 (527) .....+-+........-++. .-++..-|+++ ++ .+-+|.+.+. .|+++-+-+...+.+++..|++|. T Consensus 321 ~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~l-lDk~~Eefeq~st--slSGLddVi~qf~q~VAgaa~IPl 397 (695) T protein:vir:78 321 FSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILF-LDKATEEFFQFNT--PLSGLDALQAQAQEQMSAVSHIPL 397 (695) T ss_pred hhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEE-EecCCcceEEEec--ccCCHHHHHHHHHHHHHhhhcCch Confidence 11111111111111111110 01233345544 55 4788888885 899999999999999999999999 Q ss_pred h-hcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCC Q lcl|Aclame:pro 365 I-AVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVN 443 (527) Q Consensus 365 v-a~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D 443 (527) + -||+--.+-..||-.=.-.|=-.+...|+.+ +...+++++ ++|.+. . ++..+. ...+.|++.---+ T Consensus 398 tkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~--L~p~L~rl~-~ii~rS------~-~G~idp--di~~~fnPL~qmt 465 (695) T protein:vir:78 398 IKLLGITPTGLNASSEGEIRVWYDYVRAYQRNA--LQQLMNDVI-VMIQLS------L-FGAVDP--SIKWQWNALRELD 465 (695) T ss_pred hhhhccCCccccccchhhHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHH------h-cCCCCC--cceEEeCCCCCcC Confidence 4 5664322222244444444544445444444 334454443 222211 1 222222 3567899766656 Q ss_pred HHHHHH-------HHHHHHhcCCccHHHHHHHHHHh--cCCCCch-HHHHHH---HHHHHHHHHHHHHhcCccccccccc Q lcl|Aclame:pro 444 NEKRFA-------QLLELWEAGLIPAKKLTEELSKI--MGFELTE-EDFRQA---TEDKKTQGIAQAEAADPFGAQMAAE 510 (527) Q Consensus 444 ~~~~i~-------~~v~l~~aGlls~~ta~~~L~~~--g~~~~~e-~~~~~~---~e~~a~~a~~~~aa~d~~g~~~~~d 510 (527) .++.++ .-+.+..+|+|+.++..++|.+- ++ |.. .|.... ..+-.....+.+--....| +| T Consensus 466 d~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~--Y~~~~D~~d~p~~~~~~~~~~~~~~~~~~~~~----~~ 539 (695) T protein:vir:78 466 DLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGP--YAGKLDANDDPGVPADDDIDGVLTYVQRLAEG----GD 539 (695) T ss_pred HHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcc--cccccccccCCCcCccchhhhhHhhhcCcccc----cc Confidence 554443 23567789999999999988542 33 221 110000 0000000000000011111 11 Q ss_pred CCCCcccccccCCCCC---C Q lcl|Aclame:pro 511 QGIPDEEDDQALNGQP---L 527 (527) Q Consensus 511 ~g~~d~~~~~~~~~~~---~ 527 (527) -|.+-++--++-||-- + T Consensus 540 ~~~~~~~~~g~~~~~~~~~~ 559 (695) T protein:vir:78 540 TGAPGGARAGATAPPTVANV 559 (695) T ss_pred cCCCCCCCCCCCCCCceeee Confidence 1111111111111111 1 No 237 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=68.81 E-value=0.23 Score=24.06 Aligned_cols=362 Identities=13% Similarity=0.093 Sum_probs=141.2 Q ss_pred CCCChhhh---------h-hhhHHhhcccCCCCC-CChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCc Q lcl|Aclame:pro 1 MGQDKRQY---------G-STQQLRAGEANFPNA-VTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPN 69 (527) Q Consensus 1 m~~~~~qy---------~-~~~~~~~~~~~~~~~-v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~ 69 (527) |++--+-- . ....++++.....+. |+...--+..+..-|-++=.+.-..+ T Consensus 1 MGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~l------------------- 61 (394) T protein:vir:62 1 MGLRDRFSNYLFKKAEKRGYLDNVLGKSIRYSGVYVTDSNILQSSDVYELLQDISNQMVLA------------------- 61 (394) T ss_pred CchhhhhhhhccCCCCchhhhhhhhhcccccCccccChhhhhccHHHHHHHHHHHHhhccc------------------- Confidence 55422110 0 011122221111111 22222223333333333333332222 Q ss_pred hhHHHHhhhhhhccCccccccCc-chhHH-HHHHHHHHhcCch----hhHHHHhHhhhhcccEEEEEEecCCCCCccceE Q lcl|Aclame:pro 70 GEKLIEAKMRFLGQGLKWEFSKK-DAKVD-DAIRVLFDRENWE----QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLS 143 (527) Q Consensus 70 ~~k~v~~~~~~Lg~~~~~~i~~~-~~~v~-~~lr~w~~~e~l~----~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~ 143 (527) +..+... ++++. ..+..+..+-|=. .-........++.|.|+..|..++ T Consensus 62 ----------------p~~v~~~~g~~~~~~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~--------- 116 (394) T protein:vir:62 62 ----------------DIVVEDEFGNEIKDDIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQ--------- 116 (394) T ss_pred ----------------ceEEEcCCCcccchhhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecce--------- Confidence 2222111 11111 1111222221111 111223445556788877664331 Q ss_pred EEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccc Q lcl|Aclame:pro 144 LHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRP 223 (527) Q Consensus 144 i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~ 223 (527) +.- |..+.|..+++ . ...| ...| .+ T Consensus 117 ~~~--~~~~~~~~~~~-------------------~--------~~~~----~~~~---------~~------------- 141 (394) T protein:vir:62 117 IHL--ASNVFTELDDN-------------------L--------VEHF----NIGG---------HE------------- 141 (394) T ss_pred eec--cccceEEECCc-------------------e--------EEEE----eeCC---------EE------------- Confidence 000 11111111110 0 0000 0000 00 Q ss_pred cccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEEec Q lcl|Aclame:pro 224 ESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATD 303 (527) Q Consensus 224 ~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~ 303 (527) + + .==|+|+++... +..+|.|-++-+...+...+....-......-.|.|-..++ T Consensus 142 -----------~---------~----~~eiih~r~~~~-d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~ 196 (394) T protein:vir:62 142 -----------I---------P----PCMIRHVKNIGA-DHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLN 196 (394) T ss_pred -----------e---------c----hhheEEecCcCC-CCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEE Confidence 0 0 011688887643 45788887776666555444443333333344567744443 Q ss_pred cCCCcCCCCc-----cccee------cCCCe--eEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcccc Q lcl|Aclame:pro 304 SAPPRDSRGN-----MVPWT------ISPLG--MVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVV 370 (527) Q Consensus 304 g~~~~d~~G~-----~~p~~------v~pg~--~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~~ 370 (527) -....+.+.+ ..-|. ...|. |+..+.+-++..++..+.=..+.+..+...+.|+..=++|..-+|.. T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 276 (394) T protein:vir:62 197 LDAHINPQNGAQSKLINAILDQLESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTEL 276 (394) T ss_pred eCCCCCcCHHHHHHHHHHHHHHhccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCC Confidence 2211111110 01111 11233 34444444555666544445567777888899999999999999955 Q ss_pred cccccc--cHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHH Q lcl|Aclame:pro 371 DAAVAE--SGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRF 448 (527) Q Consensus 371 d~s~a~--SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i 448 (527) +-++.+ +-.-++..+.|++. .+++. +-..++ ...... ...|.|......+....+ T Consensus 277 ~~sn~e~~~~~~~~~~l~P~~~-----------~ie~~---l~~kll-------~~~~~~--~~~~~fd~~~~~~~~~~~ 333 (394) T protein:vir:62 277 IKEDIEKAMMYIHNKAVRPIMK-----------NFEDH---LSLLFY-------AQNSGK--RIKFKINILDFVTYSNKT 333 (394) T ss_pred CCcCHHHHHHHHHHHHHHHHHH-----------HHHHH---Hhhhhc-------CccccC--ceEEEechhhhcCHHHHH Confidence 433211 00011122222221 11111 111111 111111 234556555545555667 Q ss_pred HHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCC Q lcl|Aclame:pro 449 AQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALN 523 (527) Q Consensus 449 ~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~ 523 (527) +...+++.+|+++..++.+++ |.+|-.+......-.-.- - . +.+.+.+.++. ...+++.+| T Consensus 334 ~~~~~~~~~g~~T~NE~R~~~----gl~p~~~~~gd~~~~~~n----~-~---~~~~~~~~~~~--~kgge~~en 394 (394) T protein:vir:62 334 NIGYNLVRTAITSPDNVADML----GFPKQNTKESQAIYISND----V-T---EIGKKEATDGS--LGGGEENEN 394 (394) T ss_pred HHHHHHHhCCCcCHHHHHHHh----CCCCCCCCCCCeeecccc----c-c---ccccccccccc--CCCCCCCCC Confidence 778899999999999999977 445532221111000000 0 0 01111111111 111222223 No 238 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=65.20 E-value=0.29 Score=23.55 Aligned_cols=263 Identities=12% Similarity=0.067 Sum_probs=119.9 Q ss_pred cccccccCCchhHHHHhhhhhhccCccccccCcchhHHHHHHHHHHhcC----chhhHHHHhHhhhhcccEEEEEEecCC Q lcl|Aclame:pro 60 GDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFDREN----WEQKFESLKRWTEIRGDYVLLLIGDDE 135 (527) Q Consensus 60 ~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~~~v~~~lr~w~~~e~----l~~k~~~~~r~a~~~GDav~~i~~d~~ 135 (527) -.+.|+.+=. +-......+...| -.+=| ...-+....+..++.|.|+..+..+. T Consensus 1 ia~l~~~~~~------------------~~~~~~~~l~~lL---~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~- 58 (278) T protein:vir:78 1 MASLPLKMYE------------------DYKVVNTEVSDLL---TVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI- 58 (278) T ss_pred CccceeEEEe------------------cCcccccHHHHHH---HhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECC- Confidence 0111111000 0000111111122 11111 11224455567777899988777663 Q ss_pred CCCccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccc Q lcl|Aclame:pro 136 KDEGSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYE 215 (527) Q Consensus 136 k~~~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~ 215 (527) + |+.+.+..++|..+-...+.++. +. .+++. ...|.. .+ T Consensus 59 ~--G~~~~l~~l~~~~v~v~~~~~~~--~~--------------------~y~~~-----~~~g~~-------~~----- 97 (278) T protein:vir:78 59 Y--HQPSKLFLLNPDVVEMLIENQSR--EL--------------------YYSIH-----AATGNK-------LI----- 97 (278) T ss_pred C--CcEEEEEEECCceeEEEEcCCCc--eE--------------------EEEEE-----cCCceE-------EE----- Confidence 2 34566777777776554433211 11 01100 000000 00 Q ss_pred cccccccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 216 PGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFG 295 (527) Q Consensus 216 ~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~ 295 (527) + + .==|+||++..+.+.++|.|-+.-+...++..+..-. . .+..+. T Consensus 98 -------------------~-----------~--~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-~-~~~~~~ 143 (278) T protein:vir:78 98 -------------------V-----------H--NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRT-F-NLTEMQ 143 (278) T ss_pred -------------------E-----------c--cccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHH-H-HHHHhc Confidence 0 0 0117899887667888999988887777765544322 1 233333 Q ss_pred CCceEEeccCCCcC-CCCccc--cee---cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhccc Q lcl|Aclame:pro 296 GLGFYATDSAPPRD-SRGNMV--PWT---ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGV 369 (527) Q Consensus 296 g~P~~~~~g~~~~d-~~G~~~--p~~---v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G~ 369 (527) ..|...+......+ +.-+.. -|+ -+.|.+.-++++-++..++..+.-..+.+..+...+.|+..=++|+.-+|. T Consensus 144 ~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~ 223 (278) T protein:vir:78 144 KPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNA 223 (278) T ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHHhccCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 33433322211112 111100 011 235667678888899999987777778899999999999999999999985 Q ss_pred cccccccc-HHH----HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCC Q lcl|Aclame:pro 370 VDAAVAES-GIA----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPK 440 (527) Q Consensus 370 ~d~s~a~S-G~A----Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~l 440 (527) .+.+.-.+ .-+ .+..+.|++. ++...+-.++++..+.. .+ ..+.+..+- | T Consensus 224 ~~~~~~sn~~~~~~~~~~~~l~P~~~--------------~i~~~ln~~L~~~~e~~-~g-----~~~~f~~~~-l 278 (278) T protein:vir:78 224 RSNTNFAKNEELNRFYLQHTLLPIVK--------------QYEEEFNRKLLTKTDRE-KI-----GILNLTLNL-I 278 (278) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhcCChhHhc-CC-----ceEEEeccc-C Confidence 54322111 001 1112222221 11111222223222111 00 111211111 1 No 239 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=60.62 E-value=0.37 Score=22.96 Aligned_cols=389 Identities=11% Similarity=0.035 Sum_probs=150.8 Q ss_pred CCCCh--------------hhhhh--------------------hhHHhhcccCCC-----CCCChHHHHHHHHHHHHHH Q lcl|Aclame:pro 1 MGQDK--------------RQYGS--------------------TQQLRAGEANFP-----NAVTDFDKARLASYRLYED 41 (527) Q Consensus 1 m~~~~--------------~qy~~--------------------~~~~~~~~~~~~-----~~v~~~d~~Rl~aY~~~~~ 41 (527) |.+-- ..|++ ...++.|...-. ..|+..---|+.+-.-|-+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 22211 11111 122333322200 0012222222222222222 Q ss_pred HhcCChhheEeeecCCcccccccccCCchhHHHHhhhhhhccCccccccCcc-hhH-HHHHHHHHHhcC--ch--hhHHH Q lcl|Aclame:pro 42 MYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRFLGQGLKWEFSKKD-AKV-DDAIRVLFDREN--WE--QKFES 115 (527) Q Consensus 42 ~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~Lg~~~~~~i~~~~-~~v-~~~lr~w~~~e~--l~--~k~~~ 115 (527) +-.+.-.++-..+ |..+..+ .++ ...+.....+-| +. .-... T Consensus 81 ~Ia~~ia~lp~~~--------------------------------~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~ 128 (466) T protein:vir:81 81 VRQLVFSSVRFRW--------------------------------QRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSR 128 (466) T ss_pred HHHHhhccCceEE--------------------------------EEecCCceeeccccHHHHHhhCCCCCCCHHHHHHH Confidence 2222222211111 0000000 111 112222222222 11 22234 Q ss_pred HhHhhhhcccEEEEEEecCCCCC------ccceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeee Q lcl|Aclame:pro 116 LKRWTEIRGDYVLLLIGDDEKDE------GSRLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQ 189 (527) Q Consensus 116 ~~r~a~~~GDav~~i~~d~~k~~------~~r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~ 189 (527) .....+..|.|+..|.++. ++. +.-+.+..++|+.+.+..+.+...+ + T Consensus 129 l~~~lll~Gnay~~i~r~~-~g~l~~~~~g~~~~l~~l~~~~v~~~~~~~~~~~-------------------------~ 182 (466) T protein:vir:81 129 MIQDADLAGNSYWTIVDGE-FVRMRPDWVDVVVEERMVRGGRGELGGGQLGWRK-------------------------V 182 (466) T ss_pred HHHHHHhcCCeEEEEEecC-ccccccccCcceeEEEEecCcceEEEEcCCCceE-------------------------E Confidence 4556677899988888764 110 1123344455555544443332110 0 Q ss_pred eeeeeecCCccccCCccceeeecccccccccccccccccccceeeeccCcccccccccccccceEeeCCCC-CCCCccCC Q lcl|Aclame:pro 190 KYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHP-IMNAMFGR 268 (527) Q Consensus 190 ~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~-~~~~~wG~ 268 (527) .|. +...|... +. . .. .+..=-|+||++.. +.+...|. T Consensus 183 ~y~--~~~~~~~~--~~---~------------------------------~~----~~~~~dviHir~~~~~~d~~~G~ 221 (466) T protein:vir:81 183 GYL--YTEGGRQS--GN---E------------------------------SV----GFLAEDVVHFAPIPDPLASYRGM 221 (466) T ss_pred EEE--EEecCccc--cc---c------------------------------ee----eeccccEEEEcCCCCcccccccc Confidence 110 00000000 00 0 00 00011378998753 34667788 Q ss_pred ccccchHHHHHHHHhhHHHHHHHHHHhCCceEEeccCCCcCCCC--c-cccee------cCCCeeEecCCCCceEEeccc Q lcl|Aclame:pro 269 SGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRDSRG--N-MVPWT------ISPLGMVEHGQNNKIYRVNGV 339 (527) Q Consensus 269 S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~~~g~~~~d~~G--~-~~p~~------v~pg~~~el~~~~k~~~ld~~ 339 (527) |-+.-+...+........-.....+-.+.|-.+++-....+++- + ..-|+ -+-|.++-|+++-++..+... T Consensus 222 s~i~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~ 301 (466) T protein:vir:81 222 SWLTPILREIRADQAMSKHQAKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSN 301 (466) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCC Confidence 87766665554443332222223333455644443222222110 0 01111 113556668888999999987 Q ss_pred cChHHHHHHHHHHHHHHHHhhcCchhhcccccc-ccc-ccHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 340 ASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDA-AVA-ESGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLV 411 (527) Q Consensus 340 ~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~-s~a-~SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li 411 (527) +.-..+.+..+...+.|..+=++|++-+|-... +++ -|++. ++..+.|++.+ +++.+ T Consensus 302 ~~d~q~le~~~~~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~-----------ie~~l---- 366 (466) T protein:vir:81 302 LQEIDFKNVRGGGETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQN-----------LSGCI---- 366 (466) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHH-----------HHHHH---- Confidence 777778899999999999999999999984421 111 11111 22334444332 22221 Q ss_pred HHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHH-------HHHHHHhcCCccHHHHHHHHHHhcCCCCch-HHHH Q lcl|Aclame:pro 412 TQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFA-------QLLELWEAGLIPAKKLTEELSKIMGFELTE-EDFR 483 (527) Q Consensus 412 ~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~-------~~v~l~~aGlls~~ta~~~L~~~g~~~~~e-~~~~ 483 (527) ...|.. ......+.+.+...+.+=.|.+...+ ...++.++|+ +..++...+ +-|...+.. ... T Consensus 367 ~~~L~~------~~~~~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g~-t~nE~r~~~-~~gd~~~~~~~~~- 437 (466) T protein:vir:81 367 GHVMPD------MGPDVRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAGY-EPESVVAAV-NSGDLRLLKHTGL- 437 (466) T ss_pred HhhcCC------cccCcceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcCC-Chhhccccc-cCCccccccCCCc- Confidence 111211 11112233444444444445443332 2556778885 666666432 222211100 000 Q ss_pred HHHHHHHHHHHHHHHhcCcccccccccCCCCcccccccCC Q lcl|Aclame:pro 484 QATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALN 523 (527) Q Consensus 484 ~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~~~ 523 (527) ...+... ...+... .++.+...+ .|+.+| T Consensus 438 ~~~~~~~--------~~~~~~~--~~~~~~~~G-g~~ngn 466 (466) T protein:vir:81 438 TSVQLLP--------PGVSASA--SSDTPTSGG-ADDNGN 466 (466) T ss_pred chhhhcc--------ccccccc--CCCCcccCC-CCcCCC Confidence 0000000 0111110 111111000 122222 No 240 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=60.34 E-value=0.37 Score=22.92 Aligned_cols=372 Identities=15% Similarity=0.096 Sum_probs=164.9 Q ss_pred CCCChhhhh------h-----hhHHhhcccCCC-CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCC Q lcl|Aclame:pro 1 MGQDKRQYG------S-----TQQLRAGEANFP-NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVP 68 (527) Q Consensus 1 m~~~~~qy~------~-----~~~~~~~~~~~~-~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p 68 (527) |=++++--. + ...++++..... -.|+...--++.+..-|-++-.+.-..+-..+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~-------------- 66 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVEL-------------- 66 (419) T ss_pred CCcccccccccCcCCCCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEE-------------- Confidence 777654111 1 112222211111 11222222233333333333333322221111 Q ss_pred chhHHHHhhhhhhccCccccccCcc-hhH-HH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccc Q lcl|Aclame:pro 69 NGEKLIEAKMRFLGQGLKWEFSKKD-AKV-DD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSR 141 (527) Q Consensus 69 ~~~k~v~~~~~~Lg~~~~~~i~~~~-~~v-~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r 141 (527) |..+..+ +++ +. ..+.+-.+-| +. .-........++.|.|+..+.++. +| += T Consensus 67 ------------------~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~-~G--~~ 125 (419) T protein:vir:80 67 ------------------YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ-DG--VI 125 (419) T ss_pred ------------------EEecCCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECC-CC--cE Confidence 1111111 111 00 1111111111 11 112334445677899988888875 22 22 Q ss_pred eEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccc Q lcl|Aclame:pro 142 LSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) Q Consensus 142 ~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~ 221 (527) +.+..++|..+=+..+++.. ..|.- ..... T Consensus 126 ~~L~~i~~~~v~i~~~~~~~---------------------------~~y~~---~~~~~-------------------- 155 (419) T protein:vir:80 126 QGLYPLDNEAVTVMKGPDLK---------------------------PMYRV---AGADP-------------------- 155 (419) T ss_pred EEEEEecCceEEEEECCCce---------------------------EEEEE---cCccc-------------------- Confidence 34566777665444333210 01100 00000 Q ss_pred cccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCceEE Q lcl|Aclame:pro 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYA 301 (527) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~~~ 301 (527) . |-+ =|+|+++.+. +..+|.|-++-+...++-......-......-.|.|-.+ T Consensus 156 -------------~-----------~~~--~i~h~~~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gi 208 (419) T protein:vir:80 156 -------------L-----------PQR--LVHHVRWMSI-NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGV 208 (419) T ss_pred -------------c-----------chh--heEEecCCCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEE Confidence 0 000 1678887644 457888877665555544333322222233334556333 Q ss_pred e--ccCCC--cCC-CCc--cccee------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcCchhhcc Q lcl|Aclame:pro 302 T--DSAPP--RDS-RGN--MVPWT------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVG 368 (527) Q Consensus 302 ~--~g~~~--~d~-~G~--~~p~~------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~tP~va~G 368 (527) + .+... .+. .=+ ...|+ -.-|.+.-++.+-+|..+...+.=..+.+..+...+.|+..=++|+.-+| T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg 288 (419) T protein:vir:80 209 IERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVN 288 (419) T ss_pred EEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhc Confidence 3 22111 111 000 00111 12356666888999999987665566778888888999999999999999 Q ss_pred cccccccccHHH------HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCC Q lcl|Aclame:pro 369 VVDAAVAESGIA------LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPV 442 (527) Q Consensus 369 ~~d~s~a~SG~A------Lql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~ 442 (527) ..+.++- |++. ++..+.|++. .+++.+ -..+| .......+.+.+.+...+.. T Consensus 289 ~~~~~t~-~n~e~~~~~f~~~~l~P~~~-----------~ie~~l---~~kll-------~~~~~~~~~i~fd~~~l~~~ 346 (419) T protein:vir:80 289 ELERATF-SNIEHQSLQFVIYTLLPWVK-----------RHEQAK---TRDLL-------LPSERKQYFIEYNLAGLLRG 346 (419) T ss_pred CCCCCCc-ccHHHHHHHHHHHHHHHHHH-----------HHHHHH---hhhcc-------CccccCCeEEEEechhhhcc Confidence 6654432 2211 1112222222 111211 11111 11111234466667788888 Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCccccccccc-CCCCccccccc Q lcl|Aclame:pro 443 NNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAE-QGIPDEEDDQA 521 (527) Q Consensus 443 D~~~~i~~~v~l~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d-~g~~d~~~~~~ 521 (527) |.++.++...+++.+|+++..++.+++ |.+|-+. -.+. . -|+.....+. +..+.++..++ T Consensus 347 d~~~~~~~~~~~~~~G~~T~NE~R~~~----g~~p~~g-GD~~---~-----------~~~n~~~~~~~~~~~~~~~~~~ 407 (419) T protein:vir:80 347 DQSSRYAAYAVGRQWGWLSINDIRRLE----NMPPVKG-GDIY---L-----------SPMNMVDASKPQPIPMGKTEPT 407 (419) T ss_pred CHHHHHHHHHHHHhCCCcCHHHHHHHh----CCCCCCC-ccee---e-----------eccccccccccccccCCCCCch Confidence 999999999999999999999999876 4444321 1111 0 0100000000 00111111111 Q ss_pred CCCCCC Q lcl|Aclame:pro 522 LNGQPL 527 (527) Q Consensus 522 ~~~~~~ 527 (527) ..++ T Consensus 408 --~~~~ 411 (419) T protein:vir:80 408 --KAAL 411 (419) T ss_pred --hhhH Confidence 1222 No 241 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=54.98 E-value=0.49 Score=22.28 Aligned_cols=384 Identities=13% Similarity=0.057 Sum_probs=150.0 Q ss_pred CCCChhh---------hhhh---hHHhhcccCCC-CCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccC Q lcl|Aclame:pro 1 MGQDKRQ---------YGST---QQLRAGEANFP-NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYV 67 (527) Q Consensus 1 m~~~~~q---------y~~~---~~~~~~~~~~~-~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~ 67 (527) |++=.+- |.+. ..+..+..... +.+...--.+..+..-|-++=.+. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~--------------------- 59 (423) T protein:vir:81 1 MGFLQKLGLAPSVVATPEPIELVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARN--------------------- 59 (423) T ss_pred CchhHhhccccccccCccccccccccccccccccchhhHHHHHHhhhHHHHHHHHHHHh--------------------- Confidence 5443331 0000 00000110000 000000001111111122211111 Q ss_pred CchhHHHHhhhhhhccCccccccCcc--hhHHH-HHHHHHHhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCcc Q lcl|Aclame:pro 68 PNGEKLIEAKMRFLGQGLKWEFSKKD--AKVDD-AIRVLFDREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGS 140 (527) Q Consensus 68 p~~~k~v~~~~~~Lg~~~~~~i~~~~--~~v~~-~lr~w~~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~ 140 (527) ++-|-+.. |..+..| +++.+ .+.....+-| |. .-........++.|.|+..|.-|.. +.+. T Consensus 60 ----------ia~lp~~~-~~~~~dg~~~~~~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~-~~~~ 127 (423) T protein:vir:81 60 ----------VASLQLQA-FERVEDGGRERVREGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLG-VDTP 127 (423) T ss_pred ----------HhhCceEE-EEEecCCceeeeccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCC-cCcc Confidence 11110100 1111111 11111 1111111222 11 1122334466678999878776642 2233 Q ss_pred ceEEEEEccceEEEEecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeeccccccccc Q lcl|Aclame:pro 141 RLSLHEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWD 220 (527) Q Consensus 141 r~~i~~vdP~~~fp~~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd 220 (527) .+.++.+.|..+-+....++.+. +.+++.. ....+|.. T Consensus 128 ~~~l~p~~~~~v~~~~~~~~~~~---------------------~~Y~~~~--~~~~~g~~------------------- 165 (423) T protein:vir:81 128 TLDIRPIPVSWVQRRAYKDGWGS---------------------LDYIIIE--SGDNDGRS------------------- 165 (423) T ss_pred eEEEeecccceeeeeeccCCCcc---------------------eEEEEEE--ecCCCceE------------------- Confidence 33333333332222111111100 1111110 00000100 Q ss_pred ccccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHH---hCC Q lcl|Aclame:pro 221 DRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVF---GGL 297 (527) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~---~g~ 297 (527) . .+ |- ==|+|++|-.+.+.+.|.|-++-+...+... ++-......+ .+. T Consensus 166 --------------------~-~~--~~--~evih~r~~~~~~~~~G~spi~~~~~~i~~~---~~~~~~~~~~f~ng~~ 217 (423) T protein:vir:81 166 --------------------V-KV--PG--ERVIHRHGYNPKTMKRGKSPVQSLRDILGEQ---IEAAIFRAQMWRNGPR 217 (423) T ss_pred --------------------E-EE--cc--cceEEecCCCCCCccccccHHHHHHHHHHHH---HHHHHHHHHHHhccCC Confidence 0 00 11 1278999876666667988766555444433 3323333333 334 Q ss_pred ceEEe--ccCC-C--cCC-CCc--cccee-------cCCCeeEecCCCCceEEeccccChHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 298 GFYAT--DSAP-P--RDS-RGN--MVPWT-------ISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGI 362 (527) Q Consensus 298 P~~~~--~g~~-~--~d~-~G~--~~p~~-------v~pg~~~el~~~~k~~~ld~~~~la~~~~~~d~L~~~l~~vs~t 362 (527) |-.++ .... + .+. .-+ ..-|+ -+.|.++-|+++.+|..++..+.-..+.+..+...+.|+.+=++ T Consensus 218 p~gvi~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgV 297 (423) T protein:vir:81 218 PGMVIMRDPESKAGKWDAESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGI 297 (423) T ss_pred CceEEEecCcccCccCCHHHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCC Confidence 53332 2211 1 111 000 00011 12356666888899999998766666777777888899999999 Q ss_pred chhhcccccccccccHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCC Q lcl|Aclame:pro 363 PDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPV 442 (527) Q Consensus 363 P~va~G~~d~s~a~SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~ 442 (527) |++-+|.++-+.- |. ++-+...+...+-.- +...+++.+ -..+++..+ .....+.+++.+...+-. T Consensus 298 Pp~~lg~~~~~t~-sn--~e~~~~~f~~~~L~P---~~~~ie~~l---~~~L~~~~~-----~~~~~~~~~fd~~~llr~ 363 (423) T protein:vir:81 298 NPTMVGQLDNANY-SN--VREFRKALYGDNLGS---WIRIIQDVM---NLFLLPRVG-----IDNEKFYFEFNLEEKLRA 363 (423) T ss_pred CHHHhcCCCCCCc-cc--HHHHHHHHHHHHHHH---HHHHHHHHH---hhhhcCccc-----cccCccEEEecchhhhcc Confidence 9999996543322 21 121111111111000 111122211 111111111 001122345556677888 Q ss_pred CHHHHHHHHHHHH-hcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCCccccccc Q lcl|Aclame:pro 443 NNEKRFAQLLELW-EAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQA 521 (527) Q Consensus 443 D~~~~i~~~v~l~-~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~d~~~~~~ 521 (527) |.++.++...++. .+|+++.-++.+++ |.+|-+. -.+. .-|.. ...+|...+-++..++ T Consensus 364 d~~~r~~~~~~~l~~~G~~T~NE~R~~~----gl~p~~g-GD~~--------------~~p~n-~~~~~~~~~~~~~~~t 423 (423) T protein:vir:81 364 SFEEAAEIKRAAVGNVAWMTINEVRAMD----NLPSIDG-GDDL--------------ARPLN-TEFGDSEDAPGEEVET 423 (423) T ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHh----CCCCCCC-ccee--------------ecccc-cccCccCCCCCCCCCC Confidence 9888888877765 57999999999876 4444221 1111 01111 1112222221222222 No 242 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=52.65 E-value=0.55 Score=22.01 Aligned_cols=359 Identities=12% Similarity=0.058 Sum_probs=147.3 Q ss_pred CCCChhhhhhhhHHhhcccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHHhhhhh Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIEAKMRF 80 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~~~~~~ 80 (527) |++= ..|+++... +..+.+.+ .+..++.+.+. ... .-...|+.+++- T Consensus 1 Mg~f-------~~~f~~~~~-~~~~~~~~--------~~~~~~~~~a~------------~~~-----~v~~~i~~ia~~ 47 (385) T protein:vir:95 1 MGLF-------DSVFKRHSE-LSWMYDLE--------FLQDKSKKAYL------------KQI-----ALNTVVEMVART 47 (385) T ss_pred Cchh-------hhhhccCcc-cccccchh--------hhhccchhhhh------------hhH-----HHHHHHHHHHHH Confidence 7762 223333222 11121111 11111211111 111 112344444443 Q ss_pred hccCccccccCcchhHHHHHHHHH-HhcC--ch--hhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEEccceEEEE Q lcl|Aclame:pro 81 LGQGLKWEFSKKDAKVDDAIRVLF-DREN--WE--QKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFPY 155 (527) Q Consensus 81 Lg~~~~~~i~~~~~~v~~~lr~w~-~~e~--l~--~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~vdP~~~fp~ 155 (527) ++ ..+..+-..+.+....+-.-+ .+-| +. .-........+..|.++..+..+ +..+ |. T Consensus 48 ia-~~p~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~-----~~~~-----------~~ 110 (385) T protein:vir:95 48 IS-QSEFRVMKNNTKEKGTLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDE-----GHFF-----------VA 110 (385) T ss_pred Hc-ccceeeeecCccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecC-----CCee-----------ec Confidence 31 123333222222222221111 1111 11 22234455666678876444322 1111 00 Q ss_pred ecCCCCCceEEEEEEEeeeCCCCccceeeeeeeeeeeeeecCCccccCCccceeeecccccccccccccccccccceeee Q lcl|Aclame:pro 156 EDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKL 235 (527) Q Consensus 156 ~d~d~~~~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~~~~~g~p~~~g~i~~~~~~~~~g~wd~~~~~~~~~~~~~~~ 235 (527) .. |..|..... .+.+|.....+++ . +. T Consensus 111 ~~---------------~~~~~~~~~-----~~~~~~~~~~~~~------~-------------------------~~-- 137 (385) T protein:vir:95 111 DD---------------FEKEDELGL-----YSHRFTNVLVNDF------E-------------------------FK-- 137 (385) T ss_pred cc---------------ccccccccc-----ccccceeeeeccc------c-------------------------ee-- Confidence 00 001100000 0000000000000 0 00 Q ss_pred ccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCce--EEeccCCCcCCCC- Q lcl|Aclame:pro 236 STLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGF--YATDSAPPRDSRG- 312 (527) Q Consensus 236 ~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P~--~~~~g~~~~d~~G- 312 (527) ..++ .-=|+||++.......+|.|-++-+...+.. ...+..+.|.|. +.+.+....+++- T Consensus 138 ------~~~~----~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~-------~~~~~~~~~~~~g~l~~~~~~~~~~e~~ 200 (385) T protein:vir:95 138 ------RVFT----MDDVIYLKYNNQKLDAFSLGLFEDYGEIFGR-------MIDLQMLNNQIRGILKVDATKFYNKEKQ 200 (385) T ss_pred ------eeec----cccEEEecCCCCCcccccchHHHHHHHHHHH-------HHHHHHhcCCCceEEEeCCccCCCHHHH Confidence 0011 1236899887666777898866554433322 222345566663 3333322222110 Q ss_pred cc--ccee-------cCCCeeEecCCCCceEEeccc------cChHHHHHHHHHHHHHHHHhhcCchhhcccccccccc- Q lcl|Aclame:pro 313 NM--VPWT-------ISPLGMVEHGQNNKIYRVNGV------ASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAE- 376 (527) Q Consensus 313 ~~--~p~~-------v~pg~~~el~~~~k~~~ld~~------~~la~~~~~~d~L~~~l~~vs~tP~va~G~~d~s~a~- 376 (527) +. .-|. -+.+.++-++.+.+|..++.. ++-..+.+..+...+.|+.+=++|+.-+|..- ++.+ T Consensus 201 ~~~~~~~~~~~~g~~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~-sn~e~ 279 (385) T protein:vir:95 201 KELQAYIDTLFDAFQNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVLGEM-ADLEK 279 (385) T ss_pred HHHHHHHHHHhhhhhhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhcCCC-cCHHH Confidence 00 0111 123456678888899888742 23456888889999999999999998886211 1110 Q ss_pred -cHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccceeEEEEeCCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 377 -SGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELW 455 (527) Q Consensus 377 -SG~ALql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~~~~~~v~v~w~d~lP~D~~~~i~~~v~l~ 455 (527) .-.-++-.+.|++. .+++. +-..+++. .......+.+.+...+..|.++.++...+++ T Consensus 280 ~~~~~~~~~l~P~~~-----------~ie~~---l~~~L~~~-------~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~ 338 (385) T protein:vir:95 280 TIESYLQFCINPLLR-----------KIEAE---LNSKFFYQ-------DEYLNDDMHIKVVGIDKRDPLKLSEAIDKLV 338 (385) T ss_pred HHHHHHHHHHHHHHH-----------HHHHH---HHhhcCCh-------hhcccceEEEechhhhccCHHHHHHHHHHHH Confidence 00001111222111 11111 11111211 1111123566777888889999999999999 Q ss_pred hcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC-ccc Q lcl|Aclame:pro 456 EAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIP-DEE 517 (527) Q Consensus 456 ~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~~~aa~d~~g~~~~~d~g~~-d~~ 517 (527) ++|+++.-++.++| |.+|-.++-....-.-. +.... .+-.|.+ +++ T Consensus 339 ~~g~lt~NE~R~~~----g~~p~~~~~gd~~~~~~----------n~~~~--~~~kgge~~~e 385 (385) T protein:vir:95 339 ASGTFTRNQVRIMT----GEEPADDPELDKFIITK----------NLQSA--DAFKGGESNEE 385 (385) T ss_pred hCCCcCHHHHHHHh----CCCCCCCCCCceeeecc----------cceec--ccccCCCCCCC Confidence 99999999999877 44443221111100000 00000 0011111 111 No 243 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=21.74 E-value=2.6 Score=18.35 Aligned_cols=436 Identities=11% Similarity=0.120 Sum_probs=196.2 Q ss_pred CCCChhhhhhhhHHhhc-----ccCCCCCCChHHHHHHHHHHHHHHHhcCChhheEeeecCCcccccccccCCchhHHHH Q lcl|Aclame:pro 1 MGQDKRQYGSTQQLRAG-----EANFPNAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPIYVPNGEKLIE 75 (527) Q Consensus 1 m~~~~~qy~~~~~~~~~-----~~~~~~~v~~~d~~Rl~aY~~~~~~y~~~~~~~~~i~~g~d~~~~~~~~~p~~~k~v~ 75 (527) =+-.++-.+++..+..| +.++-+.+. +.+.=++.||.+..++.=. .+ -.-||+ T Consensus 21 s~~~~~~~dg~~~~~~~~~~g~~~~~e~~~~-~~~eLI~~YR~ma~~pEvd-----------~A----------v~eIVn 78 (537) T protein:vir:10 21 SFVQKDSLDGSQPIVGGGYFGYSVDFDGTIR-NDHELITRYREMVLNPECD-----------SA----------VDDVVN 78 (537) T ss_pred cccCCCcccccceeecccccccccccccccc-hHHHHHHHHHHHhhccchh-----------hH----------HHHhhc Confidence 22233344444444443 222222111 3455678888887766322 00 001222 Q ss_pred hhhhhhccCccccc----cCcchhHHHHHHHHHHhc----CchhhHHHHhHhhhhcccEEEEEEecCCCCCccceEEEEE Q lcl|Aclame:pro 76 AKMRFLGQGLKWEF----SKKDAKVDDAIRVLFDRE----NWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEV 147 (527) Q Consensus 76 ~~~~~Lg~~~~~~i----~~~~~~v~~~lr~w~~~e----~l~~k~~~~~r~a~~~GDav~~i~~d~~k~~~~r~~i~~v 147 (527) .+.-+=--.....+ ...++++++.++.=|+.= ++..+..+.-|.=-+=|.=+||..-||.++-.....++-+ T Consensus 79 eaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~ll~F~~~~~e~fR~WYVDgRi~fhKiid~k~pk~GI~ELr~l 158 (537) T protein:vir:10 79 ETICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILRLLDFDNRAYEIFRRWYVDGRLFFHKVIDPKKPRQGLVELRYV 158 (537) T ss_pred ceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHHHhccchhhhHHHhhheeeeEEEEEEEEeCCCccccceeeeee Confidence 21111100011111 113456666666655411 1223333333333345777889988887766667888999 Q ss_pred ccceEEEEec---CCCCC-ceEEEEEEEeeeCCCCccceeeeeeeeeeeee--ecCCccccCCccceeeecccccccccc Q lcl|Aclame:pro 148 DPSTYFPYED---PRYPG-QVLGVYLVDEYPHPDSEKKNEKCARVQKYMKT--LDDDGKPVPGGAIKYTEELYEPGKWDD 221 (527) Q Consensus 148 dP~~~fp~~d---~d~~~-~v~~vh~a~~~~~pd~~~~~~k~~rr~~~~~~--~~~~g~p~~~g~i~~~~~~~~~g~wd~ 221 (527) ||.++.++-- .+..+ ++..++ ..+.. .+..+ |++.| .+.. T Consensus 159 DPr~i~~vR~i~~~~~~~~~~~~~~--------------~~v~~--~~~eyf~ynp~g------~~~~------------ 204 (537) T protein:vir:10 159 DPRKIRKVTEYEAKRPEALRTQDLN--------------QQLTQ--QSASYFLYNPKG------LKNS------------ 204 (537) T ss_pred CCccceeeEeecccCCccceEEecc--------------eeeee--cccceeeecccc------cccc------------ Confidence 9999987621 11111 011000 00000 00000 11111 0000 Q ss_pred cccccccccceeeeccCcccccccccccccceEeeCCCCCCCCccCCccccchHHHHHHHHhhHHHHHHHHHHhCCc--- Q lcl|Aclame:pro 222 RPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLG--- 298 (527) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~e~~l~~pi~~iPVV~~pN~~~~~~~wG~S~Ledl~~l~deLn~~lsd~~~i~~~~g~P--- 298 (527) + + ..+--|-+.|-++|.-=- ..+..-.-|-|...+-.++-| +.|-|.+.|-+++=.| T Consensus 205 ----~-----------~---~~vkI~~dAI~y~hSGl~-d~n~~~i~syLhkAiKp~NQL-km~EDAlVIYRitRAPeRR 264 (537) T protein:vir:10 205 ----T-----------N---QGMKIAPDSIAYCHSGIQ-DLNKNMVLSHLHKAIKAVNQL-RMIEDSLVIYRLSRAPERR 264 (537) T ss_pred ----C-----------C---CceeccHhheeeecccce-eCCCCeeeeeehhhhHHHHhh-HHHHhhHHHHhhhccccce Confidence 0 0 001112245555552211 122334568888888888888 8999999999999888 Q ss_pred eEEe--ccCCC-------------------cC-CCCcccceecCCCee---Ee-cCCCCceEEeccccChH--HHHHHHH Q lcl|Aclame:pro 299 FYAT--DSAPP-------------------RD-SRGNMVPWTISPLGM---VE-HGQNNKIYRVNGVASLE--PSQTHMN 350 (527) Q Consensus 299 ~~~~--~g~~~-------------------~d-~~G~~~p~~v~pg~~---~e-l~~~~k~~~ld~~~~la--~~~~~~d 350 (527) ++++ .+++. -| .||++.+-+-.=.|+ |- =-++++-+.+++++... +-.+.|+ T Consensus 265 vFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLPRReGgrgTEItTLpGgqnlgem~DV~ 344 (537) T protein:vir:10 265 IFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFWLPRREGGRGTEISTLPGGQNLGELEDVK 344 (537) T ss_pred EEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhhhhhcccccCCCcccceeeccccCCcChHHHHH Confidence 4444 33222 12 477764322111111 21 12445555555554222 3457788 Q ss_pred HHHHHHHHhhcCchhhccccc---ccccccHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccc Q lcl|Aclame:pro 351 KAEEAMQQTKGIPDIAVGVVD---AAVAESGIAL-DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDA 426 (527) Q Consensus 351 ~L~~~l~~vs~tP~va~G~~d---~s~a~SG~AL-ql~~~PLlakv~~krl~~~~~~~q~~~~li~~~L~~~e~v~~~~~ 426 (527) ...+.|+..-.+|-.=++.-. -+.+ |-+.= ++.|+ --+.|.|.-|...+.++++ .++++. ++...+. T Consensus 345 YF~kKLy~aLnVP~SRl~~e~~f~~Gr~-~EItRDEiKF~---KFI~RLR~rFs~lF~~~Lk---~qLilK--giit~ee 415 (537) T protein:vir:10 345 YFQKKLYKALNVPSSRLETETTFNIGRA-AEITRDEVKFQ---KFIARLRKRFSELFVDLLK---TQLILK--GICSIEE 415 (537) T ss_pred HHHHHHHHHhCCCccccCCCCccccccc-chhhHHHHHHH---HHHHHHHHHHHHHHHHHHH---Hhhhhc--cCCCHHH Confidence 888999987777765544211 1111 11111 24444 2333444434433333322 122211 2211111 Q ss_pred ccce--eEEEEeCCCCCCC---HHHHHHHHHHH------HhcCCccHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 427 DKKL--TVTITFRDPKPVN---NEKRFAQLLEL------WEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIA 495 (527) Q Consensus 427 ~~~~--~v~v~w~d~lP~D---~~~~i~~~v~l------~~aGlls~~ta~~~L~~~g~~~~~e~~~~~~~e~~a~~a~~ 495 (527) -..+ ...+.|...-=-. +.+++++.+.+ +....+|.+++++..+ ..|++++.++.+.|+.... T Consensus 416 W~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~IL-----r~tDeeI~~~~k~I~~E~k- 489 (537) T protein:vir:10 416 WEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVL-----KQTESEIKEIDKEIKQEIA- 489 (537) T ss_pred HHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHh-----ccCHHHHHHHHHHHHHHhh- Confidence 0000 0123333221111 12333333332 4456689999998873 4589999998888875433 Q ss_pred HHHhcCccc---------ccccccCCCCcccccccCCCCCC Q lcl|Aclame:pro 496 QAEAADPFG---------AQMAAEQGIPDEEDDQALNGQPL 527 (527) Q Consensus 496 ~~aa~d~~g---------~~~~~d~g~~d~~~~~~~~~~~~ 527 (527) +--..||.. ...+...|.++-+.|..-+.+|- T Consensus 490 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (537) T protein:vir:10 490 DGVIMDPQAMQAMEMGIGDEEPVPEGGEEPQTDPNSAVSPA 530 (537) T ss_pred CCCCCCcccccccccCCCCcccCCCCCCCcccCCccCCCCC Confidence 111122221 11122233344445555555665 Done!