BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:94417|NCBI_annot:ORF018|genbank:acc:YP_2 40012;genbank:gi:66395674;genbank:GeneID:5133077 (213 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|14334|lcl|protein:vir:9365 Length: 213 # NCBI annotation: maj... 434 e-124 gi|8817|lcl|protein:vir:96971 Length: 213 # NCBI annotation: ORF... 434 e-124 gi|11428|lcl|protein:vir:78634 Length: 213 # NCBI annotation: ma... 434 e-124 gi|3118|lcl|protein:vir:94417 Length: 213 # NCBI annotation: ORF... 434 e-124 gi|17420|lcl|protein:vir:2690 Length: 213 # NCBI annotation: maj... 432 e-123 gi|2230|lcl|protein:vir:93909 Length: 213 # NCBI annotation: ORF... 427 e-122 gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Ts... 107 1e-25 gi|7052|lcl|protein:vir:98634 Length: 196 # NCBI annotation: put... 84 1e-18 gi|19033|lcl|protein:vir:9649 Length: 194 # NCBI annotation: put... 78 8e-17 gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hyp... 48 1e-07 gi|19245|lcl|protein:vir:3850 Length: 237 # NCBI annotation: maj... 34 0.001 gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: ph... 29 0.041 gi|1554|lcl|protein:vir:100889 Length: 202 # NCBI annotation: ma... 27 0.20 gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: maj... 25 0.90 gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp... 23 2.7 gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: ta... 23 3.9 gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: put... 21 9.7 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 21 9.8 gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: pu... 21 9.9 >gi|14334|lcl|protein:vir:9365 Length: 213 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803343;genbank:gi:29028654;genbank:GeneID :1258106 Length = 213 Score = 434 bits (1117), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK Sbjct: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 Query: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG Sbjct: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 Query: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH Sbjct: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 Query: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS Sbjct: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 >gi|8817|lcl|protein:vir:96971 Length: 213 # NCBI annotation: ORF021 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239866;genbank:gi:66395529;genbank:GeneID :5133004 Length = 213 Score = 434 bits (1117), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK Sbjct: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 Query: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG Sbjct: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 Query: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH Sbjct: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 Query: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS Sbjct: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 >gi|11428|lcl|protein:vir:78634 Length: 213 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429948;genbank:gi:156604002;genbank:Ge neID:5525380 Length = 213 Score = 434 bits (1117), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK Sbjct: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 Query: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG Sbjct: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 Query: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH Sbjct: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 Query: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS Sbjct: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 >gi|3118|lcl|protein:vir:94417 Length: 213 # NCBI annotation: ORF018 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240012;genbank:gi:66395674;genbank:GeneID :5133077 Length = 213 Score = 434 bits (1117), Expect = e-124, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK Sbjct: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 Query: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG Sbjct: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 Query: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH Sbjct: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 Query: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS Sbjct: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 >gi|17420|lcl|protein:vir:2690 Length: 213 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075509;genbank:gi:12719438;genbank:GeneID :920181 Length = 213 Score = 432 bits (1111), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/213 (99%), Positives = 212/213 (99%) Query: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK Sbjct: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 Query: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG Sbjct: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 Query: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH Sbjct: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 Query: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 EGKEGE EFFKKVFVGYTDSEDHSEDSAGSLPS Sbjct: 181 EGKEGETEFFKKVFVGYTDSEDHSEDSAGSLPS 213 >gi|2230|lcl|protein:vir:93909 Length: 213 # NCBI annotation: ORF017 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239944;genbank:gi:66395605;genbank:GeneID :5130975 Length = 213 Score = 427 bits (1098), Expect = e-122, Method: Compositional matrix adjust. Identities = 209/213 (98%), Positives = 211/213 (99%) Query: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK Sbjct: 1 MAEGQGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNK 60 Query: 61 RVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDG 120 RVWMKKQGTNEVKSDMSIFNIPS+DLNTVIGR+KDKNGTSWVGENTRAPYVTVIGESEDG Sbjct: 61 RVWMKKQGTNEVKSDMSIFNIPSEDLNTVIGRSKDKNGTSWVGENTRAPYVTVIGESEDG 120 Query: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYH 180 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGT QGIVYGYH Sbjct: 121 LTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTPQGIVYGYH 180 Query: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSAGSLPS 213 EGKEGEAEFFKKVFVGYTDSEDHSEDSA SLPS Sbjct: 181 EGKEGEAEFFKKVFVGYTDSEDHSEDSASSLPS 213 >gi|11077|lcl|protein:vir:78324 Length: 195 # NCBI annotation: Tsh # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468650;genbank:gi:157325228;genbank:Ge neID:5601670 Length = 195 Score = 107 bits (266), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 111/193 (57%), Gaps = 10/193 (5%) Query: 10 VGFKRLYVGVFNPEATKVVKRM--TWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQ 67 +GF++ G+++ + KV +++ +++KGGTV+ +I+GL + + +FASN ++ K+ Sbjct: 5 IGFEKATFGIYDEKDEKVTEKVEVNGKNKKGGTVEADISGLDAEAIKVFASNGPYYISKK 64 Query: 68 GTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVY 127 G+ +VK + I +P + ++GR K+ +G VG+NT PY + + ESE L G+PV+ Sbjct: 65 GSGDVKQTIGIMELPFELGQKLLGRQKNADGIVTVGKNTAPPYASCVMESET-LRGEPVF 123 Query: 128 VALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYHEGKEGEA 187 ALLKG + D ++ T +K + PE T LTG+++ G V+ G+E Sbjct: 124 FALLKGKYGQDDVKLNTSEDKPKEPEATSLTGEFVYN-------DAGDVFAMAVGEEFRD 176 Query: 188 EFFKKVFVGYTDS 200 + + F G+ ++ Sbjct: 177 KIYSMAFPGFVET 189 >gi|7052|lcl|protein:vir:98634 Length: 196 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039929;genbank:gi:126011104;genbank:Ge neID:4818470 Length = 196 Score = 84.0 bits (206), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%) Query: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 +GFKR+ + V + E V T +KG T I+GLA + V F S+ + ++G Sbjct: 9 IGFKRMTITVLDNETNSFVIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 66 Query: 70 NEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVYVA 129 +VK + +IP + L ++G KD G ++VGE+T +P V+V+ E+ G+ Y+ Sbjct: 67 GDVKMETEAIDIPFEVLKVILGY-KDNKGVTFVGEDTESPEVSVLLEAP-ATGGKNAYLG 124 Query: 130 LLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 KGTFS+D IE+K++ EK E + KL Sbjct: 125 FFKGTFSMDDIEWKSKEEKNEGLDSQKL 152 >gi|19033|lcl|protein:vir:9649 Length: 194 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795411;genbank:gi:28876184;genbank:GeneID :1257698 Length = 194 Score = 78.2 bits (191), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 49/150 (32%), Positives = 80/150 (53%), Gaps = 5/150 (3%) Query: 10 VGFKRLYVGVFNPEATKVVKRMTWEDEKGGTVDLNITGLAPDLVDMFASNKRVWMKKQGT 69 +GFKR+ + V + + T +KG T I+GLA + V F S+ + ++G Sbjct: 4 IGFKRMTITVLDSTTNSFIIEGT--KDKGATKVAKISGLASEPVKTFGSDIAYYTSRRGV 61 Query: 70 NEVKSDMSIFNIPSDDLNTVIGRT--KDKNGTSWVGENTRAPYVTVIGESEDGLTGQPVY 127 +VK + +IP D L ++G G ++VGE+T +P V+V+ E+ G+ Y Sbjct: 62 GDVKMETEAIDIPFDVLKKILGYKDGSSSTGVTFVGEDTESPEVSVLLEAP-ATGGKNAY 120 Query: 128 VALLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 + KGTFS+D IE+K++ EK E + KL Sbjct: 121 LGFFKGTFSMDDIEWKSKEEKNEGLDSQKL 150 >gi|16642|lcl|protein:vir:9710 Length: 203 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795472;genbank:gi:28876219;genbank:GeneID :1257763 Length = 203 Score = 47.8 bits (112), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 89/200 (44%), Gaps = 14/200 (7%) Query: 5 QGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKG-GTVDLNITGLAPDLVDMFASNKRVW 63 G K G + Y GV + + K + G + L+IT +LV + A + Sbjct: 1 MGKVKFGLRDFYYGVLDDKDMVKDKGAGIKHLPGMKSAKLDITN---ELVTVSADDGPYV 57 Query: 64 MKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTVIGESEDGLTG 123 + G E K ++ + ++ SD G T +K + T V S++ G Sbjct: 58 VLSGGITETKLEIEVLDLTSDARKDFFGITVEKGVEKYNRSLTPKDIACVFRTSDE--NG 115 Query: 124 QPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNRKVDVDGTSQGIVYGYHEGK 183 + ++V LLKG F+L +E +T+ E A P+P +TG+++ R D D ++ G Sbjct: 116 KAIWVGLLKGKFNLPGMEAQTK-EGAPDPKPDSVTGNFVARGKDGD-----VILIGRGGA 169 Query: 184 EGEA--EFFKKVFVGYTDSE 201 +G +F K VF G D+E Sbjct: 170 DGFKIDDFLKCVFAGCGDAE 189 >gi|19245|lcl|protein:vir:3850 Length: 237 # NCBI annotation: major tail protein # Family: family:all:1028 # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050156;swissprot:trembl:q9t1f1;genbank:gi :9633048;uniprot:Q9T1F1;genbank:GeneID:1262146 Length = 237 Score = 34.3 bits (77), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 39 GTVDLNITGLAPDLVDMFASNKRVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNG 98 GT NITGL P + ++ SN + + G + + +++ ++P D + + G KD+ Sbjct: 47 GTTQSNITGLNPTIQKVYGSNT-IAESEVGIENISATLAVNDMPFDISSLLQGMYKDETH 105 Query: 99 TSWVGENTRAPYVTVIGESEDGLTGQPVYVALLKGTFS 136 + + R I SE+ G PVY A TF+ Sbjct: 106 GGYKRADKRLFKGAYIAISENH--GFPVYYAFPYCTFT 141 >gi|8682|lcl|protein:vir:102112 Length: 210 # NCBI annotation: phage major tail protein, phi13 family subfamily # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699936;genbank:gi:110804026;genbank:GeneI D:4206655 Length = 210 Score = 29.3 bits (64), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Query: 54 DMFASNKRVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNGTSWVGENTRAPYVTV 113 D + R +Q +V ++I ++ +D V+G K G +N AP + + Sbjct: 54 DPYYHEGRKIFDEQTIQDVAVTINITDLTDEDECYVMGHKLAKTGGVIRNDNDIAPTLAI 113 Query: 114 IGESEDGLTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDW 161 + E+E G Y L GTF L + K + K+ +P KL + Sbjct: 114 MYEAEKA-QGVTKYGILYAGTFGLSDEDIKDKEGKSNF-QPKKLQASF 159 >gi|1554|lcl|protein:vir:100889 Length: 202 # NCBI annotation: major tail protein # Family: family:all:1028 # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358769;genbank:gi:78000030;genbank:GeneID :3726160 Length = 202 Score = 26.9 bits (58), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 8/163 (4%) Query: 39 GTVDLNITGLAPDLVDMFASNKRVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNG 98 GT NITGLA + ++ +N V GT+E + I N+ + G DK G Sbjct: 42 GTKTANITGLAGTIAKIYGNN-NVQDVTVGTSEPTVALDINNLNYKIKQQIKGFVSDKKG 100 Query: 99 TSWVGENTRAPYVTVI-GESEDGLTGQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKL 157 + EN +A +I ++ D L VY G + + + KT A A + Sbjct: 101 -GYTDENLKAHVALLITTQTIDRL--HFVYYGFGDGIMTETAADIKT---DAAAEQRVDD 154 Query: 158 TGDWMNRKVDVDGTSQGIVYGYHEGKEGEAEFFKKVFVGYTDS 200 T + G +Y + K +A +K+VF GY S Sbjct: 155 TLTYTALSTVAFGNQPYKIYSDLDSKFDKANMYKEVFGGYVLS 197 >gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680492;swissprot:trembl:p94216;genbank:gi :22296532;interpro:IPR006490;uniprot:P94216;genbank:Gene ID:951722 Length = 202 Score = 24.6 bits (52), Expect = 0.90, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Query: 123 GQPVYVALLKGTFSLDSIEFKTRGEKAEAPEPTKLTGDWMNR 164 G+ V+V +LKG FSL ++ KT + P + G ++ R Sbjct: 120 GKYVWVGMLKGMFSLPGVDTKTV-DGTPDPSADSIEGSFIPR 160 >gi|9490|lcl|protein:vir:104081 Length: 594 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655592;genbank:gi:109392463;genbank:GeneI D:4156949 Length = 594 Score = 23.1 bits (48), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%) Query: 102 VGENTRAPYVTVIGESEDGLTGQ----PVYVA-LLKGTFSLDSIEF 142 VG+ AP++TV S+D PV ++ LK ++LD F Sbjct: 144 VGKRRNAPWITVAAVSQDQTKNTFSLFPVMISKKLKAEYNLDVNRF 189 >gi|2195|lcl|protein:vir:100324 Length: 168 # NCBI annotation: tail tube protein FII # Family: family:all:129 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655493;genbank:gi:109289961;genbank:GeneI D:4157367 Length = 168 Score = 22.7 bits (47), Expect = 3.9, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 136 SLDSIEFKTRGEKAEAPEPTKLTGD 160 S+D++E RG AE E + GD Sbjct: 95 SVDAVELVCRGRIAEIDEGSSKAGD 119 >gi|8305|lcl|protein:vir:96700 Length: 689 # NCBI annotation: putative phage terminase large subunit # Family: family:all:140 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039815;genbank:gi:126010850;genbank:Ge neID:5076210 Length = 689 Score = 21.2 bits (43), Expect = 9.7, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 13/34 (38%) Query: 5 QGSYKVGFKRLYVGVFNPEATKVVKRMTWEDEKG 38 QG Y GF Y A + VK M W G Sbjct: 399 QGVYNTGFGECYALTGEVPAWEEVKAMRWSYSAG 432 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 21.2 bits (43), Expect = 9.8, Method: Compositional matrix adjust. Identities = 8/15 (53%), Positives = 9/15 (60%) Query: 154 PTKLTGDWMNRKVDV 168 P K G W+N VDV Sbjct: 191 PPKYKGHWLNNWVDV 205 >gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: putative major capsid protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285818;genbank:gi:148747739;genbank:G eneID:5247194 Length = 195 Score = 21.2 bits (43), Expect = 9.9, Method: Compositional matrix adjust. Identities = 10/43 (23%), Positives = 20/43 (46%) Query: 56 FASNKRVWMKKQGTNEVKSDMSIFNIPSDDLNTVIGRTKDKNG 98 F ++ + N +++ + N+P D L ++G D NG Sbjct: 52 FYADNGPYFSYTSNNGYTAELEMANLPDDILAEMLGWEIDANG 94 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.311 0.132 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,354 Number of Sequences: 514 Number of extensions: 5606 Number of successful extensions: 32 Number of sequences better than 100.0: 23 Number of HSP's better than 100.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 23 length of query: 213 length of database: 206,069 effective HSP length: 68 effective length of query: 145 effective length of database: 171,117 effective search space: 24811965 effective search space used: 24811965 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 35 (18.1 bits)