BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:98262|NCBI_annot:gp17 terminase subunit, nuclease and ATPase|genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID:341636 4 (609 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp... 1277 0.0 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 882 0.0 gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: g... 880 0.0 gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: g... 868 0.0 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 860 0.0 gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp1... 858 0.0 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 851 0.0 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 848 0.0 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 830 0.0 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 828 0.0 gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: g... 746 0.0 gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: ter... 642 0.0 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 370 e-104 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 355 e-100 gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T... 352 1e-98 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 338 1e-94 gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: sim... 157 2e-40 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 73 8e-15 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 73 1e-14 gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypo... 42 2e-05 gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hy... 42 2e-05 gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putati... 42 2e-05 gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hyp... 42 2e-05 gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hyp... 42 2e-05 gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: pu... 42 2e-05 gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bce... 39 2e-04 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 37 8e-04 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 34 0.004 gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: te... 34 0.004 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 34 0.006 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 32 0.018 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 30 0.081 gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: c... 30 0.11 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 29 0.19 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 29 0.19 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 29 0.19 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 29 0.19 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 29 0.19 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 29 0.20 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 27 0.64 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 27 0.66 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 27 0.71 gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF... 26 1.3 gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: maj... 26 1.3 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 25 1.8 gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3... 25 2.7 gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: Pa... 25 3.3 gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: pu... 24 4.5 gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp... 24 4.9 gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp... 24 4.9 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 24 4.9 gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP... 23 7.1 gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP... 23 7.1 gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP... 23 7.2 gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: maj... 23 7.7 gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: t... 23 8.4 gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: puta... 23 9.0 >gi|24596|lcl|protein:vir:98262 Length: 609 # NCBI annotation: gp17 terminase subunit, nuclease and ATPase # Family: family:all:147 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239195;genbank:gi:66391670;genbank:GeneID :3416364 Length = 609 Score = 1277 bits (3304), Expect = 0.0, Method: Compositional matrix adjust. Identities = 609/609 (100%), Positives = 609/609 (100%) Query: 1 MEMEPTIDPSKESDHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIH 60 MEMEPTIDPSKESDHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIH Sbjct: 1 MEMEPTIDPSKESDHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIH 60 Query: 61 KVELQGKNPAEFATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAE 120 KVELQGKNPAEFATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAE Sbjct: 61 KVELQGKNPAEFATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAE 120 Query: 121 TYCAITHIDYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNE 180 TYCAITHIDYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNE Sbjct: 121 TYCAITHIDYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNE 180 Query: 181 DKYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPD 240 DKYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPD Sbjct: 181 DKYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPD 240 Query: 241 AVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAV 300 AVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAV Sbjct: 241 AVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAV 300 Query: 301 EGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTN 360 EGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTN Sbjct: 301 EGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTN 360 Query: 361 GTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITT 420 GTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITT Sbjct: 361 GTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITT 420 Query: 421 LPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVI 480 LPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVI Sbjct: 421 LPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVI 480 Query: 481 CDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFH 540 CDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFH Sbjct: 481 CDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFH 540 Query: 541 DDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDETIS 600 DDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDETIS Sbjct: 541 DDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDETIS 600 Query: 601 VGSHGISFI 609 VGSHGISFI Sbjct: 601 VGSHGISFI 609 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 882 bits (2278), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/608 (69%), Positives = 499/608 (82%), Gaps = 14/608 (2%) Query: 14 DHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGKNPAEFA 73 DHP+G+ HP LKR++ E G EWV S HD KWYP TF Y+K+ G+ +V++Q +P+ F Sbjct: 8 DHPLGMPHPSTLKREMREDG-EWVLSNHDDKWYPSTFDRYMKLQGVKRVKIQSDDPSMFR 66 Query: 74 TYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTI 133 T+K+K+NK++RY G PNLKRA ++ KWTKEML E +C++DIVYFAE YC I HIDYG I Sbjct: 67 TFKDKTNKRTRYLGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGII 126 Query: 134 KVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASM 193 +VQLRDYQK+ML M NR++ NLSRQLGKTTVVAIFLAHFVCFN K VG+LAHKASM Sbjct: 127 RVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASM 186 Query: 194 SAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYID 253 SAEVL RTKQA+ELLPDFLQPGIVEWNKGSI L N C IGAF+SSPDAVRGNSFA+IY+D Sbjct: 187 SAEVLHRTKQALELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYVD 246 Query: 254 ECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVE-------GKSGF 306 E AFIPNFTDAW+AIQPVISSGR+SKIL+TTTPNGLNH+YDIW AA+ KSGF Sbjct: 247 EVAFIPNFTDAWMAIQPVISSGRRSKILMTTTPNGLNHWYDIWTAAITPNSSGDGSKSGF 306 Query: 307 VPYTAIWTSVKERLYTD-----GDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNG 361 VPYTA W+SVKERLY+D G + FDDGYSWS+K IAGS+ +AF QEH F GT+G Sbjct: 307 VPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQEHNTAFQGTSG 366 Query: 362 TLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTL 421 TLI+G KLSK++WIDI + NF +++P+EG KY+A LD AEGRGQDYHAMHI DIT Sbjct: 367 TLINGTKLSKLNWIDI-PPQDNFTMFEEPKEGRKYIATLDSAEGRGQDYHAMHIFDITEF 425 Query: 422 PFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVIC 481 P++QVAVYHSN TSHLILPD+LL+YL MY + +IYIELNSTG S+AKSL+SEL+YENVIC Sbjct: 426 PYKQVAVYHSNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSLYSELDYENVIC 485 Query: 482 DSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHD 541 DSY DLG+KQTKRSKAIGCSTLKDLIEKDKLI+N+KK+I+E RTFSEKGVSWAAEEGFHD Sbjct: 486 DSYQDLGLKQTKRSKAIGCSTLKDLIEKDKLILNHKKSIMELRTFSEKGVSWAAEEGFHD 545 Query: 542 DLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDETISV 601 DLVMSL F WLTTQ +F++F E DD+RLANEVF +E E+L +D + VIV G++T V Sbjct: 546 DLVMSLVIFAWLTTQERFSDFTENDDMRLANEVFRKEMEELNDDYMPMVIVDDGEDTFEV 605 Query: 602 GSHGISFI 609 G+SF+ Sbjct: 606 THKGMSFV 613 >gi|22942|lcl|protein:vir:101803 Length: 613 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238880;genbank:gi:66391955;genbank:GeneID :3416630 Length = 613 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/608 (69%), Positives = 498/608 (81%), Gaps = 14/608 (2%) Query: 14 DHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGKNPAEFA 73 DHP+G+ HP LKR++ E G EWV S D KWYP TF Y+K+ G+ +V++Q +P+ F Sbjct: 8 DHPLGMPHPSTLKREMREDG-EWVLSNQDDKWYPSTFDRYMKLQGVKRVKIQSDDPSMFR 66 Query: 74 TYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTI 133 T+K+K+NK++RY G PNLKRA ++ KWTKEML E +C++DIVYFAE YC I HIDYG I Sbjct: 67 TFKDKTNKRTRYLGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEHIDYGII 126 Query: 134 KVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASM 193 +VQLRDYQK+ML M NR++ NLSRQLGKTTVVAIFLAHFVCFN K VG+LAHKASM Sbjct: 127 RVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKASM 186 Query: 194 SAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYID 253 SAEVL RTKQA+ELLPDFLQPGIVEWNKGSI L N C IGAF+SSPDAVRGNSFA+IY+D Sbjct: 187 SAEVLHRTKQALELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIYVD 246 Query: 254 ECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVE-------GKSGF 306 E AFIPNFTDAW+AIQPVISSGR+SKIL+TTTPNGLNH+YDIW AA+ KSGF Sbjct: 247 EVAFIPNFTDAWMAIQPVISSGRRSKILMTTTPNGLNHWYDIWTAAITPNSSGDGSKSGF 306 Query: 307 VPYTAIWTSVKERLYTD-----GDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNG 361 VPYTA W+SVKERLY+D G + FDDGYSWS+K IAGS+ +AF QEH F GT+G Sbjct: 307 VPYTATWSSVKERLYSDGKELSGSDSYFDDGYSWSSKTIAGSALDAFQQEHNTAFQGTSG 366 Query: 362 TLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTL 421 TLI+G KLSK++WIDI + NF +++P+EG KY+A LD AEGRGQDYHAMHI DIT Sbjct: 367 TLINGTKLSKLNWIDI-PPQDNFTMFEEPKEGRKYIATLDSAEGRGQDYHAMHIFDITEF 425 Query: 422 PFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVIC 481 P++QVAVYHSN TSHLILPD+LL+YL MY + +IYIELNSTG S+AKSL+SEL+YENVIC Sbjct: 426 PYKQVAVYHSNTTSHLILPDVLLKYLNMYFQPYIYIELNSTGVSIAKSLYSELDYENVIC 485 Query: 482 DSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHD 541 DSY DLG+KQTKRSKAIGCSTLKDLIEKDKLI+N+KK+I+E RTFSEKGVSWAAEEGFHD Sbjct: 486 DSYQDLGLKQTKRSKAIGCSTLKDLIEKDKLILNHKKSIMELRTFSEKGVSWAAEEGFHD 545 Query: 542 DLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDETISV 601 DLVMSL F WLTTQ +F++F E DD+RLANEVF +E E+L +D + VIV G++T V Sbjct: 546 DLVMSLVIFAWLTTQERFSDFTENDDMRLANEVFRKEMEELNDDYMPMVIVDDGEDTFEV 605 Query: 602 GSHGISFI 609 G+SF+ Sbjct: 606 THKGMSFV 613 >gi|28182|lcl|protein:vir:108053 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595293;genbank:gi:161622599;genbank:Ge neID:5783772 Length = 611 Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/604 (69%), Positives = 494/604 (81%), Gaps = 11/604 (1%) Query: 14 DHPIG------LMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGK 67 DHP+ + P L+RK +E G+ W++S+ D KWYP FSDYL+I+ I K+ G Sbjct: 11 DHPLNEGKTIVIKPPGSLERKTEE-GINWIKSQWDDKWYPEKFSDYLRIHKIVKIPNNGD 69 Query: 68 NPAEFATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITH 127 P EF T+K+K NK++RY G PNLKRA ++T+WT+EM+ EW KCRDDIVYFAETYCAITH Sbjct: 70 RPDEFQTFKDKMNKRTRYMGLPNLKRANIKTQWTREMVSEWKKCRDDIVYFAETYCAITH 129 Query: 128 IDYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVL 187 IDYGTIKVQLRDYQ++ML M KNRM TCNLSRQLGKTTVVAIFLAHFVCFN+DK VG+L Sbjct: 130 IDYGTIKVQLRDYQRDMLKIMSKNRMTTCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGIL 189 Query: 188 AHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSF 247 AHK SMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDN IGA+ASSPDAVRGNSF Sbjct: 190 AHKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSF 249 Query: 248 AMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFV 307 AMIYIDECAFIPNF D+WLAIQPVISSGR+SKI+ITTTPNGLNHFYDIW AAVEGKSGF Sbjct: 250 AMIYIDECAFIPNFLDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFA 309 Query: 308 PYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGW 367 PYTAIW SVKERLY D D +FDDG+ WS++ I+ SS F QEHCAEF GT+GTLISG Sbjct: 310 PYTAIWNSVKERLYNDAD--IFDDGWEWSSQTISASSLAQFRQEHCAEFQGTSGTLISGM 367 Query: 368 KLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVA 427 KL+ M W ++ FY++ +P+ HKY+A LD +EGRGQDYHA+HIID+TT +EQVA Sbjct: 368 KLAIMDWKEVIPENGYFYRFHEPDPTHKYIASLDCSEGRGQDYHALHIIDVTTDEWEQVA 427 Query: 428 VYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSYNDL 487 V HSN SH+ILPDI+ +YL YNEA +YIELNSTG SVAKSL+ +LEYENVICDS DL Sbjct: 428 VLHSNEISHMILPDIVYKYLMEYNEAPVYIELNSTGVSVAKSLYMDLEYENVICDSMQDL 487 Query: 488 GMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMSL 547 GMKQT+R+K +GCSTLKDLIEKDKL +N+K+TI+EFRTFS+ +SWAAE+GFHDDLVMSL Sbjct: 488 GMKQTRRTKPVGCSTLKDLIEKDKLKLNHKQTIMEFRTFSQNKLSWAAEDGFHDDLVMSL 547 Query: 548 ACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDET--ISVGSHG 605 F WLTTQ KFA+F ++D++RLA+EVF+RE E + E+ V V +GD + S +HG Sbjct: 548 VIFAWLTTQQKFADFIDRDEMRLASEVFSRELEDMNEEYNPVVFVDAGDNSYEYSPLNHG 607 Query: 606 ISFI 609 ISFI Sbjct: 608 ISFI 611 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 860 bits (2221), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/612 (67%), Positives = 490/612 (80%), Gaps = 18/612 (2%) Query: 12 ESDHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGKNPAE 71 ESDHP+ + HP LKR++ E G EW+ S HD KWYP TF YLK G+ +V++Q +P+ Sbjct: 5 ESDHPLQMPHPSTLKREMREDG-EWILSNHDDKWYPSTFDRYLKSQGVKRVKIQADDPSM 63 Query: 72 FATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYG 131 F T+K+K+NK+SRYNG PNLKRA ++ KWTKEML E +C++DIVYFAE YC I HIDYG Sbjct: 64 FRTFKDKTNKRSRYNGLPNLKRANIKIKWTKEMLAERKRCKEDIVYFAENYCCIEHIDYG 123 Query: 132 TIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKA 191 I+VQLRDYQK+ML M NR++ NLSRQLGKTTVVAIFLAHFVCFN K VG+LAHKA Sbjct: 124 IIRVQLRDYQKDMLRIMAGNRLMAANLSRQLGKTTVVAIFLAHFVCFNSAKNVGILAHKA 183 Query: 192 SMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIY 251 SMSAEVL RTKQA+ELLPDFLQPGIVEWNKGSI L N C IGAF+SSPDAVRGNSFA+IY Sbjct: 184 SMSAEVLHRTKQALELLPDFLQPGIVEWNKGSITLGNGCAIGAFSSSPDAVRGNSFALIY 243 Query: 252 IDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVE-------GKS 304 IDE AFIPNF DAWLAIQPVISSGR SKIL+TTTPNGLNH+YDIW AA+ KS Sbjct: 244 IDEVAFIPNFNDAWLAIQPVISSGRHSKILMTTTPNGLNHWYDIWTAAITPNSDGSGSKS 303 Query: 305 GFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKE-------AFLQEHCAEFM 357 GFVPYTA W+SVKER+Y+DG D I G ++ AF QEH F Sbjct: 304 GFVPYTATWSSVKERMYSDGSKT--DGAIHILTTDILGQPRQSPVLALRAFQQEHNTAFQ 361 Query: 358 GTNGTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIID 417 GT+GTLI+G+KLSKM+W ++ ++ NF +K+P EGHKY+A LD AEGRGQDYHAMHI D Sbjct: 362 GTSGTLINGFKLSKMTWKEVPASD-NFTMFKEPIEGHKYIATLDSAEGRGQDYHAMHIYD 420 Query: 418 ITTLPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYE 477 IT P+EQVAVYHSN TSHLILPD+LL+YL MY + +IYIELN+TG S+AKSL+SELEYE Sbjct: 421 ITEFPYEQVAVYHSNTTSHLILPDVLLKYLNMYYQPYIYIELNATGVSIAKSLYSELEYE 480 Query: 478 NVICDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEE 537 N+ICDSYNDLGMKQTKRSKAIGCSTLKDLIEK+KL++ +K TI+E RTFSEKGVSWAAE+ Sbjct: 481 NIICDSYNDLGMKQTKRSKAIGCSTLKDLIEKEKLVLYHKGTIMELRTFSEKGVSWAAED 540 Query: 538 GFHDDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDE 597 GFHDDLVMSL F WLTTQ +F++F E+DD+RLANE+F +E E LY+D VIV SG+E Sbjct: 541 GFHDDLVMSLVIFAWLTTQPRFSDFTERDDMRLANEIFRQEMENLYDDYTPVVIVDSGEE 600 Query: 598 TISVGSHGISFI 609 T VGS+G+SF+ Sbjct: 601 TFEVGSNGMSFV 612 >gi|27701|lcl|protein:vir:6893 Length: 611 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861869;genbank:gi:32453660;genbank:GeneID :1494295 Length = 611 Score = 858 bits (2216), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/604 (69%), Positives = 485/604 (80%), Gaps = 8/604 (1%) Query: 9 PSKESDHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGKN 68 P E D + L P +L + +E G+ W++S+ D KWYP FSDYL+IN I K+ Sbjct: 13 PLNEGDKVVIL--PPHLAERKEEDGIHWIKSQWDGKWYPEKFSDYLRINKIVKIPNNSDK 70 Query: 69 PAEFATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHI 128 P F TYK+K+NK++RY G PNLKRA ++T+WT EM+ EW KCRDDIVYFAETYCAITHI Sbjct: 71 PELFQTYKDKNNKRTRYMGLPNLKRANIKTQWTYEMVAEWKKCRDDIVYFAETYCAITHI 130 Query: 129 DYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLA 188 DYGTIKVQLRDYQ++ML M RM CNLSRQLGKTTVVAIFLAHFVCFN+DK VG+LA Sbjct: 131 DYGTIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILA 190 Query: 189 HKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFA 248 HK SMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSI+LDN IGA+ASSPDAVRGNSFA Sbjct: 191 HKGSMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIQLDNGSSIGAYASSPDAVRGNSFA 250 Query: 249 MIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVP 308 MIYIDECAFIPNF D+WLAIQPVISSGR+SKI+ITTTPNGLNHFYDIW AAVEGKSGF P Sbjct: 251 MIYIDECAFIPNFIDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEP 310 Query: 309 YTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWK 368 YTAIW SVKERLY D D +FDDG+ WS + I+ SS F QEH A F GT+GTLISG K Sbjct: 311 YTAIWNSVKERLYNDED--IFDDGWQWSKQTISASSLTQFRQEHTAAFEGTSGTLISGMK 368 Query: 369 LSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAV 428 L+ + +I++ F+Q+KKPEEGHKY+A LD +EGRGQDYHAMHIID+TT +EQV V Sbjct: 369 LAILDYIEVTPDSHGFHQFKKPEEGHKYIATLDCSEGRGQDYHAMHIIDVTTDKWEQVGV 428 Query: 429 YHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSYNDLG 488 HSN SHLILPDI+ +YL YNE IYIELNSTG SVAKSL+ +LEYENVICDS NDLG Sbjct: 429 LHSNTISHLILPDIVFKYLMEYNECPIYIELNSTGVSVAKSLYMDLEYENVICDSMNDLG 488 Query: 489 MKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMSLA 548 MKQ++R+K +GCSTLKDLIEKDKL IN++ TI EFRTFSEKGVSWAAEEG+HDDLVM L Sbjct: 489 MKQSRRTKPVGCSTLKDLIEKDKLKINHRATIQEFRTFSEKGVSWAAEEGYHDDLVMGLV 548 Query: 549 CFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVI---VTSGDETISVGSHG 605 FGWL+TQ KFA++ +KDD+RLA+EVF+RE + + +D PVI S + +HG Sbjct: 549 IFGWLSTQQKFADYADKDDMRLASEVFSRELQDMNDD-YAPVIFVDCASNSAEYNPSAHG 607 Query: 606 ISFI 609 +S + Sbjct: 608 LSMV 611 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/595 (69%), Positives = 483/595 (81%), Gaps = 6/595 (1%) Query: 17 IGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGKNPAEFATYK 76 I + HP +RK DE G+ W++S+ D KWYP FSDYL+++ I K+ P F TYK Sbjct: 20 ILIKHPSLAERK-DEDGIHWIKSQWDGKWYPEKFSDYLRLHKIVKIPNNSDKPELFQTYK 78 Query: 77 NKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQ 136 +K+NK+SRY G PNLKRA ++T+WT+EM+ EW KCRDDIVYFAETYCAITHIDYG IKVQ Sbjct: 79 DKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQ 138 Query: 137 LRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAE 196 LRDYQ++ML M RM CNLSRQLGKTTVVAIFLAHFVCFN+DK VG+LAHK SMSAE Sbjct: 139 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE 198 Query: 197 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECA 256 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDN IGA+ASSPDAVRGNSFAMIYIDECA Sbjct: 199 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 Query: 257 FIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSV 316 FIPNF D+WLAIQPVISSGR+SKI+ITTTPNGLNHFYDIW AAVEGKSGF PYTAIW SV Sbjct: 259 FIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSV 318 Query: 317 KERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWID 376 KERLY D D +FDDG+ WS + I GSS F QEH A F GT+GTLISG KL+ M +I+ Sbjct: 319 KERLYNDED--IFDDGWQWSIQTINGSSLAQFRQEHTAAFEGTSGTLISGMKLAVMDFIE 376 Query: 377 IDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSH 436 + + F+Q+KKPE KY+A LD +EGRGQDYHA+HIID+T +EQV V HSN SH Sbjct: 377 VTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISH 436 Query: 437 LILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSYNDLGMKQTKRSK 496 LILPDI++RYL YNE +YIELNSTG SVAKSL+ +LEYE VICDSY DLGMKQTKR+K Sbjct: 437 LILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSYTDLGMKQTKRTK 496 Query: 497 AIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMSLACFGWLTTQ 556 A+GCSTLKDLIEKDKLII+++ TI EFRTFSEKGVSWAAEEG+HDDLVMSL FGWL+TQ Sbjct: 497 AVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLVIFGWLSTQ 556 Query: 557 LKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTS--GDETISVGSHGISFI 609 KF ++ +KDD+RLA+EVF++E + + +D + V S E + V SHG+S + Sbjct: 557 SKFIDYADKDDMRLASEVFSKELQDMSDDYAPVIFVDSVHSAEYVPV-SHGMSMV 610 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/595 (69%), Positives = 483/595 (81%), Gaps = 6/595 (1%) Query: 17 IGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIHKVELQGKNPAEFATYK 76 I + HP +RK DE G+ W++S+ D KWYP FSDYL+++ I K+ P F TYK Sbjct: 20 ILIKHPSLAERK-DEDGIHWIKSQWDGKWYPEKFSDYLRLHKIVKIPNNSDKPELFQTYK 78 Query: 77 NKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQ 136 +K+NK+SRY G PNLKRA ++T+WT+EM+ EW KCRDDIVYFAETYCAITHIDYG IKVQ Sbjct: 79 DKNNKRSRYMGLPNLKRANIKTQWTREMVEEWKKCRDDIVYFAETYCAITHIDYGVIKVQ 138 Query: 137 LRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAE 196 LRDYQ++ML M RM CNLSRQLGKTTVVAIFLAHFVCFN+DK VG+LAHK SMSAE Sbjct: 139 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE 198 Query: 197 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECA 256 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDN IGA+ASSPDAVRGNSFAMIYIDECA Sbjct: 199 VLDRTKQAIELLPDFLQPGIVEWNKGSIELDNGSSIGAYASSPDAVRGNSFAMIYIDECA 258 Query: 257 FIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSV 316 FIPNF D+WLAIQPVISSGR+SKI+ITTTPNGLNHFYDIW AAVEGKSGF PYTAIW SV Sbjct: 259 FIPNFHDSWLAIQPVISSGRRSKIIITTTPNGLNHFYDIWTAAVEGKSGFEPYTAIWNSV 318 Query: 317 KERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWID 376 KERLY D D +FDDG+ WS + I GS+ F QEH A F GT+GTLISG KL+ M +I+ Sbjct: 319 KERLYNDED--IFDDGWQWSIQTINGSTLAQFRQEHTAAFEGTSGTLISGMKLAIMDFIE 376 Query: 377 IDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSH 436 + + F+++KKPE KY+A LD +EGRGQDYHA+HIID+T +EQV V HSN SH Sbjct: 377 VTPDDHGFHRFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDVWEQVGVLHSNTISH 436 Query: 437 LILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSYNDLGMKQTKRSK 496 LILPDI++RYL YNE +YIELNSTG SVAKSL+ +LEYE VICDSY DLGMKQTKR+K Sbjct: 437 LILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICDSYTDLGMKQTKRTK 496 Query: 497 AIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMSLACFGWLTTQ 556 A+GCSTLKDLIEKDKLII+++ TI EFRTFSEKGVSWAAEEG+HDDLVMSL FGWL+TQ Sbjct: 497 AVGCSTLKDLIEKDKLIIHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLVIFGWLSTQ 556 Query: 557 LKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTS--GDETISVGSHGISFI 609 KF ++ +KDD+RLA+EVF++E + + +D + V S E + V SHG+S + Sbjct: 557 SKFIDYADKDDMRLASEVFSKELQDMSDDYAPVIFVDSVHSAEYVPV-SHGMSMV 610 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/599 (65%), Positives = 480/599 (80%), Gaps = 4/599 (0%) Query: 1 MEMEPTIDPSKESDHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIH 60 M + I+ +HP+ L HP L+ KID G+EW+ S+HD KWYP FSDYLK+N Sbjct: 1 MSVIEGINAMATDEHPLHLAHPSTLETKIDSNGIEWILSKHDDKWYPKKFSDYLKLNRPQ 60 Query: 61 KVELQGKNPAEFATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAE 120 K+ +Q +P + +K+ N ++RY NL+RA ++T++T EM+ EW +CR DIVYFAE Sbjct: 61 KIRMQSTDPTNYKFFKDSDNIRTRYMRLKNLRRANIKTQYTPEMIAEWKRCRKDIVYFAE 120 Query: 121 TYCAITHIDYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNE 180 TYCAITHIDYGTIKVQLRDYQK+ML MH+NRM LSRQLGKTT VAIFLAH+VCFN+ Sbjct: 121 TYCAITHIDYGTIKVQLRDYQKDMLKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCFNK 180 Query: 181 DKYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPD 240 DK VG+LAHK SM+ EVL+RTKQAIELLPDFLQPGIVEWNK SI L+N IGA+ASSPD Sbjct: 181 DKAVGILAHKGSMAVEVLERTKQAIELLPDFLQPGIVEWNKKSIVLENGSSIGAYASSPD 240 Query: 241 AVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAV 300 AVRGNSF+ IYIDECAFI N+TD +LAIQPVISSGR+SK+++TTTPNGLNHFYDIW +A+ Sbjct: 241 AVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQSAI 300 Query: 301 EGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTN 360 +GKSG+VPY A+W SVKERLY D +FDDGY WS++ IAGSS E FLQEH AEF G++ Sbjct: 301 DGKSGYVPYEAVWHSVKERLYNKAD--IFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSS 358 Query: 361 GTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITT 420 GTLI LS++S+ID+ + FYQ++KP+EG KYVA LD +EGRGQDYHA+ IIDIT Sbjct: 359 GTLIRATTLSRLSFIDV-VNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITE 417 Query: 421 LPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVI 480 P++QVAVYHSN TSH ILPDI+ +YL MYNE +YIELNSTG S+AKSL +LEY+N+I Sbjct: 418 FPYKQVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNII 477 Query: 481 CDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFH 540 CDS+ DLGMKQ+KRSKA+GCS LKDLIEKDKLIIN+K TI E RTFSEKGVSWAAEEGFH Sbjct: 478 CDSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFSEKGVSWAAEEGFH 537 Query: 541 DDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDETI 599 DDLVMSL FGWLTTQ KFAE+ KD++R+A+E+F +E ++L E+ PV++ G I Sbjct: 538 DDLVMSLVIFGWLTTQEKFAEYAGKDEMRIASEIFRKELDELGEE-YAPVVIYDGANGI 595 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/599 (65%), Positives = 479/599 (79%), Gaps = 4/599 (0%) Query: 1 MEMEPTIDPSKESDHPIGLMHPDYLKRKIDEAGMEWVQSEHDKKWYPYTFSDYLKINGIH 60 M + I+ +HP+ L HP L+ KID G+EW+ S+HD KWYP FSDYLK+N Sbjct: 1 MSVIEGINAMATDEHPLHLAHPSTLETKIDSNGIEWILSKHDDKWYPKKFSDYLKLNRPQ 60 Query: 61 KVELQGKNPAEFATYKNKSNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAE 120 K+ +Q +P + +K+ N ++RY NL+RA ++T++T EM+ EW +CR DIVYFAE Sbjct: 61 KIRMQSTDPTNYKVFKDSDNIRTRYMRLKNLRRANIKTQYTPEMIAEWKRCRKDIVYFAE 120 Query: 121 TYCAITHIDYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNE 180 TYCAITHIDYGTIKVQLRDYQK+ML MH+NRM LSRQLGKTT VAIFLAH+VCFN+ Sbjct: 121 TYCAITHIDYGTIKVQLRDYQKDMLKIMHENRMSAHKLSRQLGKTTAVAIFLAHYVCFNK 180 Query: 181 DKYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPD 240 DK VG+LAHK SM+ EVL+RTKQAIELLPDFLQPGIVEWNK SI L+N IGA+ASSPD Sbjct: 181 DKAVGILAHKGSMAVEVLERTKQAIELLPDFLQPGIVEWNKKSIVLENGSSIGAYASSPD 240 Query: 241 AVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAV 300 AVRGNSF+ IYIDECAFI N+TD +LAIQPVISSGR+SK+++TTTPNGLNHFYDIW +A+ Sbjct: 241 AVRGNSFSFIYIDECAFIQNWTDCFLAIQPVISSGRESKMIMTTTPNGLNHFYDIWQSAI 300 Query: 301 EGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTN 360 +GKSG+VPY A+W SVKERLY D +FDDGY WS++ IAGSS E FLQEH AEF G++ Sbjct: 301 DGKSGYVPYEAVWHSVKERLYNKAD--IFDDGYEWSSQAIAGSSLEQFLQEHNAEFFGSS 358 Query: 361 GTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITT 420 GTLI LS++S+ID+ + FYQ++KP+EG KYVA LD +EGRGQDYHA+ IIDIT Sbjct: 359 GTLIRATTLSRLSFIDV-VNDNGFYQFEKPKEGRKYVATLDCSEGRGQDYHALQIIDITE 417 Query: 421 LPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVI 480 P++ VAVYHSN TSH ILPDI+ +YL MYNE +YIELNSTG S+AKSL +LEY+N+I Sbjct: 418 FPYKPVAVYHSNTTSHFILPDIVFKYLMMYNECPVYIELNSTGVSIAKSLAMDLEYDNII 477 Query: 481 CDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFH 540 CDS+ DLGMKQ+KRSKA+GCS LKDLIEKDKLIIN+K TI E RTFSEKGVSWAAEEGFH Sbjct: 478 CDSFIDLGMKQSKRSKAMGCSALKDLIEKDKLIINHKGTIQELRTFSEKGVSWAAEEGFH 537 Query: 541 DDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDETI 599 DDLVMSL FGWLTTQ KFAE+ KD++R+A+E+F +E ++L E+ PV++ G I Sbjct: 538 DDLVMSLVIFGWLTTQEKFAEYAGKDEMRIASEIFRKELDELGEE-YAPVVIYDGANGI 595 >gi|20804|lcl|protein:vir:106290 Length: 633 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944105;genbank:gi:38640149;genbank:GeneID :2658038 Length = 633 Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/573 (61%), Positives = 441/573 (76%), Gaps = 4/573 (0%) Query: 36 WVQSEHDKKWYPYTFSDYLKINGIHKVELQGKNPAEFATYKNKSNKKSRYNGNPNLKRAY 95 + +S+HD +WYP T+ Y ++ + K+ LQGK+P++F ++K++ NK++RY G PNLKRA Sbjct: 62 YYKSQHDGRWYPETYDIYSELKRVQKMNLQGKDPSDFKSFKDRFNKRTRYLGLPNLKRAN 121 Query: 96 VQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQKEMLIEMHKNRMVT 155 V TKWT+EM+ EW +CRDDIVYFAETYC+I HID+G IKVQLRDYQK+ML M RM Sbjct: 122 VPTKWTREMVEEWKRCRDDIVYFAETYCSIIHIDWGVIKVQLRDYQKDMLRIMASERMSM 181 Query: 156 CNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPG 215 NL RQLGKTT AIFL HFV FNE K VGVLAHK MS EVL+RTKQ+IELLPDFLQPG Sbjct: 182 HNLPRQLGKTTATAIFLTHFVVFNEAKAVGVLAHKGDMSKEVLERTKQSIELLPDFLQPG 241 Query: 216 IVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSG 275 IVEWNKG+IEL+N C IGA+ASSPDAVRGNSFA+IY+DECAFI F D W AI PVISSG Sbjct: 242 IVEWNKGNIELENGCSIGAYASSPDAVRGNSFALIYVDECAFIEGFEDTWKAILPVISSG 301 Query: 276 RKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSW 335 R+S+I++T+TPNG+NH+YD+W +++ GF PYT W +VKERLY D +DDG+ W Sbjct: 302 RQSRIILTSTPNGINHWYDLWEVSLKSDKGFKPYTTTWITVKERLYDGSD--AYDDGFEW 359 Query: 336 SAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHK 395 ++K I SS EAF QEH FMGT+GTLI+G+KLSKM+W ++ + NFYQ +KP EG+K Sbjct: 360 ASKQINSSSVEAFQQEHLCRFMGTSGTLINGFKLSKMTWKEV-IADDNFYQIEKPVEGNK 418 Query: 396 YVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWI 455 Y+A +DPAEGRGQDY + IID+T+ P+ QVAVYHSN+ S L+LP +++RY YN AW+ Sbjct: 419 YIATVDPAEGRGQDYSTIQIIDVTSYPYRQVAVYHSNKISPLLLPSVIMRYAMEYNNAWV 478 Query: 456 YIELNSTGHSVAKSLFSELEYENVICDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIIN 515 YIELNS G+ VAKSLF +LEYENVI DS DLGMKQTK +KA+GCSTLKDLIEKDKLI++ Sbjct: 479 YIELNSIGNMVAKSLFIDLEYENVIVDSSKDLGMKQTKVTKAVGCSTLKDLIEKDKLIVS 538 Query: 516 NKKTILEFRTFSEKGVSWAAEEGFHDDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVF 575 +K TI EFRTF EKGVSWAA++GFHDDLVMSL F +LTTQ +F +F + + +VF Sbjct: 539 HKGTIQEFRTFVEKGVSWAAQDGFHDDLVMSLCIFAYLTTQERFGDFIDA-TRNIGADVF 597 Query: 576 AREREQLYEDALCPVIVTSGDETISVGSHGISF 608 E E++ ED I+ G T V + ++ Sbjct: 598 QSEMEEMLEDFCVGAIIDDGINTYEVDNRDMTL 630 >gi|26943|lcl|protein:vir:5662 Length: 600 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899601;genbank:gi:34419588;genbank:GeneID :2546011 Length = 600 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/577 (54%), Positives = 412/577 (71%), Gaps = 15/577 (2%) Query: 33 GMEWVQSEHDKKWYPYTFSDYLKINGI---HKVELQGKNPAEFATYKNKSNKKSRYNGNP 89 G+++VQS D +WYP D+ +N + HK+ +Q +P++F TYK+K N++SRY P Sbjct: 15 GIKYVQSNEDMQWYPRYLDDWKVLNRMDKAHKLRIQSTDPSDFKTYKDKGNRRSRYMNIP 74 Query: 90 NLKRAYVQTKW---TKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQKEMLI 146 NL+RA ++ E+ E+ KCRDDIVYFAE YC+I HID G IK+ R YQKEML Sbjct: 75 NLRRANAPIRFGAPLSEIKAEFQKCRDDIVYFAENYCSIVHIDLGNIKMVPRPYQKEMLE 134 Query: 147 EMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTKQAIE 206 ++R L RQLGKTT++ IFLAH++ FNEDK G+LAHK SMS EVL+R K IE Sbjct: 135 VADRSRFSIFLLPRQLGKTTIMGIFLAHYLVFNEDKEAGILAHKGSMSMEVLERVKNVIE 194 Query: 207 LLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWL 266 LPDFLQPGI EWNKG+I DN CK+GA+AS DAVRG SF+MIY+DECAF+P F D W Sbjct: 195 NLPDFLQPGIEEWNKGNITFDNGCKLGAYASGSDAVRGKSFSMIYVDECAFVPGFDDFWK 254 Query: 267 AIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSVKERLYTDGDN 326 A PVISSG +SK+++T+TPNGLNH++D+WNAAV+G S F PYT W +V+ RLY DG+ Sbjct: 255 ATFPVISSGEESKVVLTSTPNGLNHYHDMWNAAVQGISTFEPYTTTWRAVQNRLYKDGE- 313 Query: 327 GVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWIDIDETETNFYQ 386 FDDG ++ + I +S+EAF QEH F+GT GTLI+G+KLSKM ID+ + + Sbjct: 314 --FDDGEAFKRETIGNTSREAFSQEHLCNFLGTAGTLINGFKLSKMKGIDVVKDSDGWCV 371 Query: 387 YKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRY 446 YKKPEEGHKY+ +D +EGRGQDYHA+H+ID+T+ PFEQVAV+H N+TSHL+LP I+++ Sbjct: 372 YKKPEEGHKYILTVDTSEGRGQDYHALHMIDVTSYPFEQVAVFHDNKTSHLLLPAIIMKQ 431 Query: 447 LTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICD-----SYNDLGMKQTKRSKAIGCS 501 YNEA++Y E+ STG V LF +LEYENVI + LG+K K++KAIGCS Sbjct: 432 AYRYNEAYVYCEIASTGELVMNELFRDLEYENVIMEERASGGRRGLGLKPNKKTKAIGCS 491 Query: 502 TLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMSLACFGWLTTQLKFAE 561 TLKDLIEKD+L IN+ T+ EF TF EKG SW AEEGFHDDLVMSL +L+TQ +F++ Sbjct: 492 TLKDLIEKDQLKINHIPTLKEFHTFVEKGKSWEAEEGFHDDLVMSLTLLAYLSTQDRFSD 551 Query: 562 FCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDET 598 F EK + ++ ++F +E + +D + +++ G E Sbjct: 552 FVEK-EYNVSYDIFKQEVHDMMDDDVPFLMIADGIEN 587 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 370 bits (949), Expect = e-104, Method: Compositional matrix adjust. Identities = 197/531 (37%), Positives = 303/531 (57%), Gaps = 33/531 (6%) Query: 85 YNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQKEM 144 Y GNP LK+A V+ +TKE + EW+KC +D VYF + Y I +D G + ++ D+Q+E+ Sbjct: 7 YLGNPLLKKANVKIDFTKEQVKEWIKCANDPVYFTKNYVKIVSLDEGLVPFKMWDFQEEL 66 Query: 145 LIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTKQA 204 +++ HKNR L RQ GK+T V +L H++ FN++ +G+LA+KAS + ++L R A Sbjct: 67 IMKFHKNRFNIAKLPRQTGKSTTVVSYLLHYLIFNDNVNIGILANKASTARDLLARLATA 126 Query: 205 IELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPN-FTD 263 E LP ++Q G+V WNKG+IEL+N KI A ++S AVRG SF +I++DE AF+PN D Sbjct: 127 YENLPKWIQQGVVVWNKGNIELENGSKILAASTSASAVRGMSFNIIFLDEFAFVPNHIAD 186 Query: 264 AWLA-IQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSVKERLYT 322 ++ A + P I+SG+ +K++I +TP G+NHFY +W A G++G+ + W+ V R Sbjct: 187 SFFASVYPTITSGKSTKVIIISTPQGMNHFYKMWVDATNGRNGYTFHEVHWSQVPGR--- 243 Query: 323 DGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWIDIDETET 382 W + I +S+ F QE EF+G+ TLI+ KL + + D + Sbjct: 244 ---------DEKWKEETIKNTSERQFTQEFECEFLGSVDTLIAASKLKALVFNDPIKRNK 294 Query: 383 NFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDI 442 Y++P+E +Y+ +D + G G DY A I DITT+P++ V Y +N ++ P+I Sbjct: 295 GLDIYEEPKEKSEYLMTVDVSRGIGGDYSAFIIFDITTVPYKVVGKYRNNEIKPMLFPNI 354 Query: 443 LLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVI----------------CDSYND 486 + YN AW+ E+N G VA L +LEY NV+ S Sbjct: 355 INDLARSYNNAWVLCEVNDIGDQVASILNYDLEYPNVLMCAMRGRAGQLVGQGFSGSKTQ 414 Query: 487 LGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMS 546 LG+K + K +GC+ LK ++E+DKLI N+ I E TF +K S+ A+EGFHDDLVM Sbjct: 415 LGVKMSITVKKVGCANLKTIVEEDKLIFNDYDIINELTTFIQKKQSFEADEGFHDDLVMC 474 Query: 547 LACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDE 597 + F WL Q F E + D + ++ ++ Q+ +D +T+G E Sbjct: 475 MVIFAWLVQQDYFKEMTDND---IRQRIYDEQKNQIEQDMAPFGFITTGLE 522 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 355 bits (911), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/537 (36%), Positives = 302/537 (56%), Gaps = 33/537 (6%) Query: 79 SNKKSRYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQLR 138 S K+ Y GNPNLK+A V T++TK+ + E++KC D VYF Y I +D G I + Sbjct: 2 STKQEIYLGNPNLKKANVSTQFTKKQVAEYMKCAQDPVYFIRKYIRIVSLDEGVIPFDMY 61 Query: 139 DYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVL 198 ++Q++M+ + H++R L RQ GK+T+V +L +V FN + V +LA+KA + E+L Sbjct: 62 NFQEDMVTKFHQHRFNIAKLPRQSGKSTIVTAYLLWYVLFNANVNVAILANKAPTAREML 121 Query: 199 DRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 R + + E LP ++Q GI+ WNKGS+EL+N KI A ++S AVRG SF +I++DE AF+ Sbjct: 122 GRLQLSYENLPKWMQQGILGWNKGSLELENGSKILASSTSASAVRGMSFNIIFLDEFAFV 181 Query: 259 PNFT--DAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSV 316 PN + ++ P ISSG+ +K++I +TP+G+N FY +W+ A G + +V W+ V Sbjct: 182 PNHIAEQFFASVYPTISSGKSTKVIIISTPHGMNQFYKLWHDAERGANNYVATEVHWSQV 241 Query: 317 KERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWID 376 R DD W + I +S+ F E EF+G+ TLI+ KL M + D Sbjct: 242 PGR----------DD--KWKQQTIENTSEAQFRVEFECEFLGSVDTLITPSKLRIMPYKD 289 Query: 377 IDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSH 436 + Y+ +E H Y+ +D + G G DY A +ID TT+P++ VA Y +N+ Sbjct: 290 PIQENRGLAVYEHVQENHNYIITVDVSRGVGNDYSAFCVIDTTTVPYKVVARYKNNQIKP 349 Query: 437 LILPDILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSY------------ 484 L+ P++++ T YN A++ E+N G VA + +LEYEN++ S Sbjct: 350 LVFPNLIVDVATNYNGAYVLCEVNDIGGQVADIIQYDLEYENLLMVSMRGRAGQQLGQGF 409 Query: 485 ----NDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFH 540 LG+K + K +GCS LK LIE DKLI+ + TI E TF +KG S+ AE+G + Sbjct: 410 SGKKTQLGIKMSTAVKQVGCSNLKALIEDDKLIVEDYDTIAELTTFIQKGQSFQAEDGCN 469 Query: 541 DDLVMSLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSGDE 597 DDL M L F W+ Q F E + D + ++ +R+Q+ +D V+ G E Sbjct: 470 DDLAMCLVIFSWMAMQPYFKEMHDND---VRQRIYEDQRDQIEQDMAPFGFVSDGLE 523 >gi|24012|lcl|protein:vir:104946 Length: 547 # NCBI annotation: T4-like DNA packaging large subunit terminase # Family: family:all:147 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214360;genbank:gi:61806000;genbank:GeneID :3294466 Length = 547 Score = 352 bits (902), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 191/540 (35%), Positives = 297/540 (55%), Gaps = 34/540 (6%) Query: 85 YNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQKEM 144 Y GNPNLK+A +++K+ + E++KC++D VYF Y I +D G + + D+Q+++ Sbjct: 5 YLGNPNLKKANTPIEFSKDNIREFLKCKEDPVYFTRNYIKIVSLDEGLVPFNMYDFQEKL 64 Query: 145 LIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTKQA 204 + H+NR C + RQ GK+T +L H+ FN++ V VLA+KAS + ++L R + A Sbjct: 65 ITRFHENRFNICKMPRQTGKSTTCISYLLHYAVFNDNVNVAVLANKASTARDLLGRLQLA 124 Query: 205 IELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFT-- 262 E LP ++Q GI+ WNKGS+EL+N KI A ++S AVRG S+ +I++DE AFIPN Sbjct: 125 YENLPRWMQQGIISWNKGSLELENGSKISANSTSSSAVRGGSYNVIFLDEFAFIPNHIAD 184 Query: 263 DAWLAIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSVKERLYT 322 D + ++ P I+SG+ +K++I +TP G+NHFY +W+ + +GKS +V W+ V R Sbjct: 185 DFFASVYPTITSGQSTKVIIVSTPRGMNHFYRMWHDSEKGKSEYVATDVHWSEVPGR--- 241 Query: 323 DGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWIDIDETET 382 W + IA +S++ F E EF+G+ TLI+ KL + + Sbjct: 242 ---------DEEWKEQTIANTSEQQFKIEFECEFLGSVNTLINPAKLRNLVYEAPKTRNA 292 Query: 383 NFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDI 442 Y+ P + H Y+ +D A G G DY A + D T P++ VA Y +N ++ P+I Sbjct: 293 GLDIYETPVKEHNYIITVDVARGLGNDYSAFIVFDTTEFPYKVVAKYRNNEIKPMLFPNI 352 Query: 443 LLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVICDSY----------------ND 486 +L YN A++ IE+N G VA L +LEYENV+ S Sbjct: 353 ILDVAKGYNNAYLLIEVNDIGDQVASILQYDLEYENVLMASMRGRAGQIVGQGFSGKKTQ 412 Query: 487 LGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVMS 546 LG++ T K +GCS LK ++E DKL+ + + I E TF+++ S+ AEEG +DDL M Sbjct: 413 LGVRMTSAVKKLGCSNLKTMMEDDKLLTCDYEIISELTTFAQRHNSFEAEEGCNDDLAMC 472 Query: 547 LACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYEDALCPVIVTSG-DETISVGSHG 605 L F WL Q F E + D + ++ ++ Q+ +D + G D+T V G Sbjct: 473 LVIFSWLVAQDYFKEMSDND---IRKRIYEEQKNQIEQDMAPFGFIADGLDDTSFVDKDG 529 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 338 bits (866), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 183/520 (35%), Positives = 292/520 (56%), Gaps = 33/520 (6%) Query: 84 RYNGNPNLKRAYVQTKWTKEMLMEWVKCRDDIVYFAETYCAITHIDYGTIKVQLRDYQKE 143 +Y GNPNLK+A V ++T + + E +KC ++ VYF + Y I +D G I + +Q+E Sbjct: 6 QYLGNPNLKKANVSQEFTPDQVAEVIKCSENPVYFIKNYIKIVSLDKGLIPFDMYYFQEE 65 Query: 144 MLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTKQ 203 M+ + H NR L RQ GK+T+V +L +V FN + V +LA+KA+ + E+L R + Sbjct: 66 MVQKFHDNRFNIAKLPRQSGKSTIVTSYLLWYVLFNANVNVAILANKAATAREMLQRLQL 125 Query: 204 AIELLPDFLQPGIVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPN-FT 262 + E LP +LQ GI++WN+GS+EL+N KI A ++S AVRG SF +I++DE AF+PN Sbjct: 126 SYENLPKWLQQGILQWNRGSLELENGSKILAASTSASAVRGMSFNVIFLDEFAFVPNHVA 185 Query: 263 DAWL-AIQPVISSGRKSKILITTTPNGLNHFYDIWNAAVEGKSGFVPYTAIWTSVKERLY 321 D + ++ P ISSG+ +K++I +TP+G+N FY +W+ A + ++P W+ V R Sbjct: 186 DQFFSSVYPTISSGKSTKVIIISTPHGMNMFYKLWHDAERKANEYIPTEVHWSEVPGR-- 243 Query: 322 TDGDNGVFDDGYSWSAKMIAGSSKEAFLQEHCAEFMGTNGTLISGWKLSKMSWIDIDETE 381 +W + I +S++ F E EF+G+ TLIS KL M + D + Sbjct: 244 ----------DAAWKEQTIKNTSEQQFRVEFECEFLGSVDTLISPSKLRTMVYGDPIAEK 293 Query: 382 TNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPD 441 Y+K +GH YV D + G DY A +ID TT+P++ VA Y +N ++ P+ Sbjct: 294 NGLSMYEKTIQGHTYVITADVSRGVSGDYSAFLVIDTTTIPYKLVAKYRNNDIKPILFPN 353 Query: 442 ILLRYLTMYNEAWIYIELNSTGHSVAKSLFSELEYENVI----------------CDSYN 485 I++ YN A++ +E+N G VA + +LEY+N++ Sbjct: 354 IIVDVARNYNHAFVLVEVNDVGGQVADIIQYDLEYDNLLMCAMRGRAGQQLGQGFSGKKT 413 Query: 486 DLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILEFRTFSEKGVSWAAEEGFHDDLVM 545 +G+K + +K +GCS LK L+E DK ++N+ I E TF +KG ++ AEEG +DDL M Sbjct: 414 QMGIKMSSATKQVGCSNLKALLEDDKFLLNDYDCISELTTFIQKGQTFQAEEGCNDDLAM 473 Query: 546 SLACFGWLTTQLKFAEFCEKDDLRLANEVFAREREQLYED 585 + F W+ Q F E + D + ++ +RE + +D Sbjct: 474 CMVIFAWMAMQPYFKELHDND---VRQRIYDDQREAIEQD 510 >gi|16897|lcl|protein:vir:5867 Length: 508 # NCBI annotation: similar to terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835653;genbank:gi:30044056 Length = 508 Score = 157 bits (398), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/446 (27%), Positives = 214/446 (47%), Gaps = 36/446 (8%) Query: 110 KCRDDIVYFAETYCAITHIDYGTIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVA 169 KC++D +YF Y I H I L Q++++ H +R V RQ+G T Sbjct: 13 KCKNDPIYFIRKYVKIQHPIKRVIPFDLYPIQEKLINFYHTHRYVITEKPRQMGVTWCAV 72 Query: 170 IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNK 229 + H + FN + V + A+K + + VL+R K A E LP FLQ WNK IE N Sbjct: 73 AYALHQMIFNSNYKVLIAANKEATAKNVLERIKFAYEQLPRFLQIKKRTWNKTYIEFSNY 132 Query: 230 CKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGL 289 A +S D+ R S ++ ++E AFI N + W ++Q +++G K ++ +T NG+ Sbjct: 133 SSARAVSSKSDSGRSESITLLIVEEAAFISNMEELWASVQQTLATG--GKCIVNSTYNGV 190 Query: 290 NHFYD-IWNAAVEGKSGFVPYTAIWTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAF 348 ++Y+ AA EGKS F + W+ ER D F++ +++ F Sbjct: 191 GNWYERTIRAAKEGKSEFKYFGIKWSDHPER-----DEKWFEE----QKRLLP---PRVF 238 Query: 349 LQEHCAEFMGTNGTLISGWKLSKMSWID--IDETETNFYQ-YKKPEEGHKYVAVLDPAEG 405 QE G+ +I + + +ID + + ++++ Y+KP G+ +++V DPA G Sbjct: 239 AQEILCIPQGSGENVIPFHLIREEEFIDPFVVKYGGDYWEWYRKP--GYYFISV-DPASG 295 Query: 406 RGQDYHAMHI----IDITTLPFEQVAVYHSNRTSHLILPDILLRYLTMYNEAWIYIELNS 461 RG+D A+ + +D TL EQVA + S++TS ++ ++ + + I+IE N Sbjct: 296 RGEDRSAVGVQVLWVDPQTLTIEQVAEFASDKTSLPVMRQVIKQIYDEFKPQLIFIETNG 355 Query: 462 TGHSVAKSLFSELEYENVICDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTIL 521 G + Y+ + + + +G T+R K G L L E +LI+ +K+ + Sbjct: 356 IGMGL---------YQFMEAYTPSIVGYYTTQRKKVHGSDLLAKLYEDGRLILRSKRLLE 406 Query: 522 EFRTFSEKGVSWAAEEGFHDDLVMSL 547 + + + V E +DL M+L Sbjct: 407 QLQRTT--WVKNKVETAGRNDLYMAL 430 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 73.2 bits (178), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 146/330 (44%), Gaps = 35/330 (10%) Query: 233 GAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHF 292 G A PD +RG + + +DE A IP F+ AI+P +S R LI +TP GLN F Sbjct: 129 GKSADRPDNLRGATLDFVILDEAAMIP-FSVWSEAIEPTLSV-RDGWALIISTPKGLNWF 186 Query: 293 YDIWNAAVEG--KSGFVPYTAI-WTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFL 349 Y+ + G K G +P + I T + V+ + W + F Sbjct: 187 YEFFLMGWRGGLKEG-IPNSGINQTHPDFESFHAASWDVWPERREWYMERRLYIPDLEFR 245 Query: 350 QEHCAEFMGTNGTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQD 409 QE+ AEF+ + ++ SG + + + T Y +P+ H Y D G+ QD Sbjct: 246 QEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDY-RPD--HIYCIGAD--FGKNQD 300 Query: 410 YHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLTM---YNEAWIYIELNSTGHSV 466 Y ++D+ T A+ R + D + R + Y A++ + G ++ Sbjct: 301 YSVFSVLDLDT-----GAIVCLERMNGATWSDQVARLKALSEDYGHAYVVADTWGVGDAI 355 Query: 467 AKSLFSELEYENVICDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILE---- 522 A+ EL+ + + +Y L +K + + + S L L+EK ++ + N KTIL+ Sbjct: 356 AE----ELDAQGI---NYTPLPVKSSSVKEQL-ISNLALLMEKGQVAVPNDKTILDELRN 407 Query: 523 ---FRTFSEKGVSWAAEEGFHDDLVMSLAC 549 +RT S V A G HDD+VMSLA Sbjct: 408 FRYYRTASGNQVMRAYGRG-HDDIVMSLAL 436 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 90/330 (27%), Positives = 146/330 (44%), Gaps = 35/330 (10%) Query: 233 GAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHF 292 G A PD +RG + + +DE A IP F+ AI+P +S R LI +TP GLN F Sbjct: 129 GKSADRPDNLRGATLDFVILDEAAMIP-FSVWSEAIEPTLSV-RDGWALIISTPKGLNWF 186 Query: 293 YDIWNAAVEG--KSGFVPYTAI-WTSVKERLYTDGDNGVFDDGYSWSAKMIAGSSKEAFL 349 Y+ + G K G +P + + T + V+ + W + F Sbjct: 187 YEFFLMGWRGGLKEG-IPNSGVNQTHPDFESFHAASWDVWPERREWYMERRLYIPDLEFR 245 Query: 350 QEHCAEFMGTNGTLISGWKLSKMSWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQD 409 QE+ AEF+ + ++ SG + + + T Y +P+ H Y D G+ QD Sbjct: 246 QEYGAEFVSHSNSVFSGLDMLILLPYERRGTRLVVEDY-RPD--HIYCIGAD--FGKNQD 300 Query: 410 YHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLTM---YNEAWIYIELNSTGHSV 466 Y ++D+ T A+ R + D + R + Y A++ + G ++ Sbjct: 301 YSVFSVLDLDT-----GAIVCLERMNGATWSDQVARLKALSEDYGHAYVVADTWGVGDAI 355 Query: 467 AKSLFSELEYENVICDSYNDLGMKQTKRSKAIGCSTLKDLIEKDKLIINNKKTILE---- 522 A+ EL+ + + +Y L +K + + + S L L+EK ++ + N KTIL+ Sbjct: 356 AE----ELDAQGI---NYTPLPVKSSSVKEQL-ISNLALLMEKGQVAVPNDKTILDELRN 407 Query: 523 ---FRTFSEKGVSWAAEEGFHDDLVMSLAC 549 +RT S V A G HDD+VMSLA Sbjct: 408 FRYYRTASGNQVMRAYGRG-HDDIVMSLAL 436 >gi|17621|lcl|protein:vir:816 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050549;genbank:gi:9633446;genbank:GeneID: 1262208 Length = 568 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 16/169 (9%) Query: 390 PEEGHKYVAVLDPAEG-RGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLT 448 P+ +YV D AEG D ++ ++ + EQVA + + + L ++ + Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAEL-FAHLISQVCR 430 Query: 449 MYNEAWIYIELNSTGHSV---------AKSLFSELEYENVICDSYNDLGMKQTKRSKAIG 499 MYN A++ E N+ GH+V + +++E + D LG T++SK + Sbjct: 431 MYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKPVL 490 Query: 500 CSTLKDLIEKDKLIINNKKTILEFRT--FSEKGVSWAAEEGFHDDLVMS 546 +K L+ I T+ E T + KG S A+EG DD +MS Sbjct: 491 TEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMS 538 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 133 IKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKAS 192 + ++R Q+++ MH ++ +RQLG +T + I+L F G++A Sbjct: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 Query: 193 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS 223 ++E+ RTK A+ LPD+L+ IVE G+ Sbjct: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGA 141 >gi|25680|lcl|protein:vir:10116 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859246;genbank:gi:32171173;genbank:GeneID :2653342 Length = 568 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 16/169 (9%) Query: 390 PEEGHKYVAVLDPAEG-RGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLT 448 P+ +YV D AEG D ++ ++ + EQVA + + + L ++ + Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAEL-FAHLISQVCR 430 Query: 449 MYNEAWIYIELNSTGHSV---------AKSLFSELEYENVICDSYNDLGMKQTKRSKAIG 499 MYN A++ E N+ GH+V + +++E + D LG T++SK + Sbjct: 431 MYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKPVL 490 Query: 500 CSTLKDLIEKDKLIINNKKTILEFRT--FSEKGVSWAAEEGFHDDLVMS 546 +K L+ I T+ E T + KG S A+EG DD +MS Sbjct: 491 TEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMS 538 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 133 IKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKAS 192 + ++R Q+++ MH ++ +RQLG +T + I+L F G++A Sbjct: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 Query: 193 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS 223 ++E+ RTK A+ LPD+L+ IVE G+ Sbjct: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGA 141 >gi|51|lcl|protein:vir:3295 Length: 568 # NCBI annotation: putative large subunit terminase # Family: family:all:147 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049511;genbank:gi:9632517;genbank:GeneID: 1262002 Length = 568 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 16/169 (9%) Query: 390 PEEGHKYVAVLDPAEG-RGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLT 448 P+ +YV D AEG D ++ ++ + EQVA + + + L ++ + Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAEL-FAHLISQVCR 430 Query: 449 MYNEAWIYIELNSTGHSV---------AKSLFSELEYENVICDSYNDLGMKQTKRSKAIG 499 MYN A++ E N+ GH+V + +++E + D LG T++SK + Sbjct: 431 MYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKPVL 490 Query: 500 CSTLKDLIEKDKLIINNKKTILEFRT--FSEKGVSWAAEEGFHDDLVMS 546 +K L+ I T+ E T + KG S A+EG DD +MS Sbjct: 491 TEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMS 538 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 133 IKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKAS 192 + ++R Q+++ MH ++ +RQLG +T + I+L F G++A Sbjct: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 Query: 193 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS 223 ++E+ RTK A+ LPD+L+ IVE G+ Sbjct: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGA 141 >gi|26240|lcl|protein:vir:2763 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612880;genbank:gi:20065962;genbank:GeneID :935714 Length = 568 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 16/169 (9%) Query: 390 PEEGHKYVAVLDPAEG-RGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLT 448 P+ +YV D AEG D ++ ++ + EQVA + + + L ++ + Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAEL-FAHLISQVCR 430 Query: 449 MYNEAWIYIELNSTGHSV---------AKSLFSELEYENVICDSYNDLGMKQTKRSKAIG 499 MYN A++ E N+ GH+V + +++E + D LG T++SK + Sbjct: 431 MYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKPVL 490 Query: 500 CSTLKDLIEKDKLIINNKKTILEFRT--FSEKGVSWAAEEGFHDDLVMS 546 +K L+ I T+ E T + KG S A+EG DD +MS Sbjct: 491 TEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMS 538 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 133 IKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKAS 192 + ++R Q+++ MH ++ +RQLG +T + I+L F G++A Sbjct: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 Query: 193 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS 223 ++E+ RTK A+ LPD+L+ IVE G+ Sbjct: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGA 141 >gi|25849|lcl|protein:vir:9949 Length: 568 # NCBI annotation: hypothetical protein # Family: family:all:147 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859079;genbank:gi:32171001;genbank:GeneID :2653280 Length = 568 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 16/169 (9%) Query: 390 PEEGHKYVAVLDPAEG-RGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLT 448 P+ +YV D AEG D ++ ++ + EQVA + + + L ++ + Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAEL-FAHLISQVCR 430 Query: 449 MYNEAWIYIELNSTGHSV---------AKSLFSELEYENVICDSYNDLGMKQTKRSKAIG 499 MYN A++ E N+ GH+V + +++E + D LG T++SK + Sbjct: 431 MYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKPVL 490 Query: 500 CSTLKDLIEKDKLIINNKKTILEFRT--FSEKGVSWAAEEGFHDDLVMS 546 +K L+ I T+ E T + KG S A+EG DD +MS Sbjct: 491 TEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMS 538 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 133 IKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKAS 192 + ++R Q+++ MH ++ +RQLG +T + I+L F G++A Sbjct: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 Query: 193 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS 223 ++E+ RTK A+ LPD+L+ IVE G+ Sbjct: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGA 141 >gi|1476|lcl|protein:vir:104436 Length: 568 # NCBI annotation: putative terminase large subunit # Family: family:all:147 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794060;genbank:gi:116222005;genbank:GeneI D:4397501 Length = 568 Score = 42.0 bits (97), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 16/169 (9%) Query: 390 PEEGHKYVAVLDPAEG-RGQDYHAMHIIDITTLPFEQVAVYHSNRTSHLILPDILLRYLT 448 P+ +YV D AEG D ++ ++ + EQVA + + + L ++ + Sbjct: 374 PDPDEEYVCGADTAEGLEHGDRSSLDVVKRSN--GEQVAHWFGHLDAEL-FAHLISQVCR 430 Query: 449 MYNEAWIYIELNSTGHSV---------AKSLFSELEYENVICDSYNDLGMKQTKRSKAIG 499 MYN A++ E N+ GH+V + +++E + D LG T++SK + Sbjct: 431 MYNNAFVGPERNNHGHAVILKLRELYPTRYIYNEQHLDQAYDDDTPRLGWLTTRQSKPVL 490 Query: 500 CSTLKDLIEKDKLIINNKKTILEFRT--FSEKGVSWAAEEGFHDDLVMS 546 +K L+ I T+ E T + KG S A+EG DD +MS Sbjct: 491 TEGMKTLLNNGISGIRWSGTLSEMNTYVYDAKG-SMNAQEGCFDDQLMS 538 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%) Query: 133 IKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKAS 192 + ++R Q+++ MH ++ +RQLG +T + I+L F G++A Sbjct: 50 VTFRMRPAQRQLFRSMHNKNIIL--KARQLGFSTAIDIYLLDQALFIPHLKCGIVAQDKQ 107 Query: 193 MSAEVLDRTKQAIEL--LPDFLQPG--IVEWNKGS 223 ++E+ RTK A+ LPD+L+ IVE G+ Sbjct: 108 AASEIF-RTKIAVPFDHLPDWLRASFTIVERRSGA 141 >gi|1431|lcl|protein:vir:93626 Length: 530 # NCBI annotation: Bcep22gp49 # Family: family:all:147 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944278;genbank:gi:38640355;genbank:GeneID :2658275 Length = 530 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 16/147 (10%) Query: 159 SRQLGKTTVVAIFLAHFVCFNEDKYVGVLAH-KASMSAEVLDRTKQAIELLPDFLQPGIV 217 +RQLG TT++ I FN + G++A + + A D+ K A + LP+ L+ + Sbjct: 77 ARQLGFTTLICIIWLDHALFNANSRCGIIAQDRETAEALFRDKVKFAYDNLPEALREAMP 136 Query: 218 EWNKGSIEL---DNKCKIGAFASSPDAVRGNSFAMIYIDE----CAFIPNFTDAWLAIQP 270 N EL N I S VRG + ++I E CA P+ A + Sbjct: 137 LANCTKAELLFAHNNSSIRVATS----VRGGTIHRLHISEFGKICAKYPD--KAAEVVTG 190 Query: 271 VISSGRKSKILI--TTTPNGLNHFYDI 295 I + KS IL+ +T FY+I Sbjct: 191 SIPAVPKSGILVIESTAEGREGEFYNI 217 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 36.6 bits (83), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 16/177 (9%) Query: 132 TIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKY------VG 185 T+K RDYQ+ ML EM ++ L R+LGKT + I + +K + Sbjct: 63 TLKWFCRDYQEPMLQEMADSKRTVLRLGRRLGKTETMCIMILWHAFTQPNKGPNNQYDIL 122 Query: 186 VLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEWNKGSIELDNKCKI-GAFASSPDA--- 241 ++A + R Q I++ D ++ IEL N I G A S Sbjct: 123 IIAPYEEQVDLIFKRLSQLIDMSGDVNPSRDID---KHIELPNGTVIHGITAGSKSGSGA 179 Query: 242 --VRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDIW 296 RG +I +DE ++ ++ + + + K+++ +TP+G Y W Sbjct: 180 ANTRGQRADLIVLDEMDYMGE-SEITNIMNIRNEAPERIKMIVASTPSGRRDSYYKW 235 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 25/161 (15%) Query: 115 IVYFAETYCAITHIDYGTIKVQLRDYQKEMLIEMH------------KNRMVTCNLSRQL 162 + + E +C +T + +L +Q+E+LI+ + K+R V ++R+ Sbjct: 28 VAKWIEEFCYLTG-SFAGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKN 86 Query: 163 GKTTV-VAIFLAHFVCFNED--KYVGVLAHKASMSAEVLDRTKQAIELLPDFLQPGIVEW 219 GK+T+ AI L H + D + + A+ + + V D KQ + P + + Sbjct: 87 GKSTIAAAIMLYHLIADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKLA--AVCDV 144 Query: 220 NKGSIEL-DNKCKIGAFASSPDAVR--GNSFAMIYIDECAF 257 + I DN ++ S DA R G + A + +DE AF Sbjct: 145 QRDVIRYKDNTYRV----VSADAGRQQGLNPAAVSLDEYAF 181 >gi|4674|lcl|protein:vir:105593 Length: 543 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164303;genbank:gi:56692921;genbank:GeneID :3197204 Length = 543 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 149 HKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEVL-DRTKQAIEL 207 H+N ++ +RQLG TT++AI FN D+ G++A + + D+ K A + Sbjct: 79 HRNLILK---ARQLGFTTLIAIMWLDHALFNGDQRCGIIAQDRDAAKVIFRDKVKFAYDN 135 Query: 208 LPD 210 LP+ Sbjct: 136 LPE 138 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 33.9 bits (76), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 244 GNSFAMIYIDECAFIPNFTDAWLAIQPVISSGR----KSKILITTTPNGLNHFYDIWNAA 299 G + I+ DE P TD + + +I+ R + L T+T NG N FYDI Sbjct: 135 GGEYCRIWCDEVGHYPPNTDLYDLHEMLITRQRTEIGPNTTLWTSTGNGFNQFYDITERQ 194 Query: 300 VEGKSGFVPY 309 V +P+ Sbjct: 195 VNADDEPLPW 204 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 32.3 bits (72), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 33/165 (20%) Query: 115 IVYFAETYCAITHIDYGTIKVQLRDYQKEMLIEMH------------KNRMVTCNLSRQL 162 + + E +C +T + +L +Q+ +LI+ + K+R V ++R+ Sbjct: 31 VAKWIEEFCYLTG-SFAGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKN 89 Query: 163 GKTTV-VAIFLAHFVCFNED--KYVGVLAHKASMSAEVLDRTKQAIELLPDF-----LQP 214 GK+T+ AI L H + D + V A+ + + V D KQ + P +Q Sbjct: 90 GKSTIAAAIMLYHLIADRGDAQRQVIAAANDRNQARMVFDSAKQMVNASPKLAAVCNVQR 149 Query: 215 GIVEWNKGSIELDNKCKIGAFASSPDAVR--GNSFAMIYIDECAF 257 ++ + DN ++ S DA R G + A + +DE AF Sbjct: 150 DVIRYK------DNTYRV----VSADAGRQQGLNPAAVSLDEYAF 184 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 30.0 bits (66), Expect = 0.081, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 216 IVEWNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSG 275 ++E KG + D G SS D ++G + A I+ DE A +P ++++ S Sbjct: 107 LIEITKGDVSNDFYIFGGKDESSQDLIQGLTLAGIFFDEVALMP---ESFVNQGTGRCSV 163 Query: 276 RKSKILITTTPNGLNHFYDI 295 SK P+G H++ + Sbjct: 164 TGSKWWFNCNPDGPYHWFKV 183 >gi|20547|lcl|protein:vir:105155 Length: 580 # NCBI annotation: conserved phage-related protein # Family: family:all:4926 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398598;genbank:gi:80159854;genbank:GeneID :3772993 Length = 580 Score = 29.6 bits (65), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 8/137 (5%) Query: 132 TIKVQLRDYQKEMLIEMHKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKA 191 + ++L +Q+ +L M +N+ V R LGK+ + A+F + G+ + + Sbjct: 61 VLGLKLYLFQRLILRAMARNQYVMLICCRGLGKSWLSAVFFVASCILYKGLKCGIASGQG 120 Query: 192 SMSAEV-LDRTKQAIELLPDFLQPGIVEWNKGS----IELDNKCKIGAFA---SSPDAVR 243 + V + + K + P + + G+ + N +I A + D R Sbjct: 121 QQARNVIIQKVKGELAKNPSIAREIVFPIKTGADDCVVNFRNGSEIRAIVLGRNQGDGAR 180 Query: 244 GNSFAMIYIDECAFIPN 260 F + +DEC + + Sbjct: 181 SWRFHYLLVDECRLVSD 197 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 152 RMVT---CNLSRQLGKTTVVA------IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTK 202 RM T +++R+ GK+ +V+ + + FN YV +K + + + Sbjct: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 Query: 203 QAIELL---PDFLQPGIVEWNKGSIE-LDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 Q + L+ F++ + K IE + + +++PDAV G + +DE A + Sbjct: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Query: 259 PN 260 P+ Sbjct: 206 PD 207 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 152 RMVT---CNLSRQLGKTTVVA------IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTK 202 RM T +++R+ GK+ +V+ + + FN YV +K + + + Sbjct: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 Query: 203 QAIELL---PDFLQPGIVEWNKGSIE-LDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 Q + L+ F++ + K IE + + +++PDAV G + +DE A + Sbjct: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Query: 259 PN 260 P+ Sbjct: 206 PD 207 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 152 RMVT---CNLSRQLGKTTVVA------IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTK 202 RM T +++R+ GK+ +V+ + + FN YV +K + + + Sbjct: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 Query: 203 QAIELL---PDFLQPGIVEWNKGSIE-LDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 Q + L+ F++ + K IE + + +++PDAV G + +DE A + Sbjct: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Query: 259 PN 260 P+ Sbjct: 206 PD 207 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 152 RMVT---CNLSRQLGKTTVVA------IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTK 202 RM T +++R+ GK+ +V+ + + FN YV +K + + + Sbjct: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 Query: 203 QAIELL---PDFLQPGIVEWNKGSIE-LDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 Q + L+ F++ + K IE + + +++PDAV G + +DE A + Sbjct: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Query: 259 PN 260 P+ Sbjct: 206 PD 207 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 28.9 bits (63), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 152 RMVT---CNLSRQLGKTTVVA------IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTK 202 RM T +++R+ GK+ +V+ + + FN YV +K + + + Sbjct: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 Query: 203 QAIELL---PDFLQPGIVEWNKGSIE-LDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 Q + L+ F++ + K IE + + +++PDAV G + +DE A + Sbjct: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Query: 259 PN 260 P+ Sbjct: 206 PD 207 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 28.9 bits (63), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 16/122 (13%) Query: 152 RMVT---CNLSRQLGKTTVVA------IFLAHFVCFNEDKYVGVLAHKASMSAEVLDRTK 202 RM T +++R+ GK+ +V+ + + FN YV +K + + + Sbjct: 89 RMFTKAYISMARKQGKSLIVSGMSVNELLFGQYPKFNRQIYVASSTYKQAQT--IFKMAS 146 Query: 203 QAIELL---PDFLQPGIVEWNKGSIE-LDNKCKIGAFASSPDAVRGNSFAMIYIDECAFI 258 Q + L+ F++ + K IE + + +++PDAV G + +DE A + Sbjct: 147 QQVNLMRSKSKFIREK-TDVRKTDIEDVLSSSVFAPLSNNPDAVDGKDPTVAILDELASM 205 Query: 259 PN 260 P+ Sbjct: 206 PD 207 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 26.9 bits (58), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Query: 149 HKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEV---LDRTKQAI 205 HK R++ R + KTT+ AI+ + K + V++ A + E+ + + + + Sbjct: 65 HKYRLIEA--PRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGL 122 Query: 206 ELLPDFLQPGIVEWNKGSIE 225 + L +F+ P I ++ S++ Sbjct: 123 DFL-EFMLPDIYAGDRASVK 141 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 26.9 bits (58), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Query: 149 HKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEV---LDRTKQAI 205 HK R++ R + KTT+ AI+ + K + V++ A + E+ + + + + Sbjct: 65 HKYRLIEA--PRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGL 122 Query: 206 ELLPDFLQPGIVEWNKGSIE 225 + L +F+ P I ++ S++ Sbjct: 123 DFL-EFMLPDIYAGDRASVK 141 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 26.9 bits (58), Expect = 0.71, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Query: 149 HKNRMVTCNLSRQLGKTTVVAIFLAHFVCFNEDKYVGVLAHKASMSAEV---LDRTKQAI 205 +K RMV R KTT+ AI+ + K + +++ A + E+ + + + + Sbjct: 65 NKYRMVEAQ--RGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAKRAEEIAGWVIKIFRGL 122 Query: 206 ELLPDFLQPGIVEWNKGSIE 225 + L +F+ P I +K SI+ Sbjct: 123 DFL-EFMLPDIYAGDKASIK 141 >gi|25398|lcl|protein:vir:8929 Length: 717 # NCBI annotation: ORF025 # Family: family:all:1546 # MgeID: mge:163 # MgeName: phiKZ # Cross-refs: genbank:acc:NP_803591;genbank:gi:29134961;genbank:GeneID :1258246 Length = 717 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 537 EGFHDDLVMSLACFGWLTTQLK 558 +G HDDLV+SL WL Q K Sbjct: 590 KGNHDDLVVSLLLAHWLLIQGK 611 >gi|2319|lcl|protein:vir:93995 Length: 301 # NCBI annotation: major tail structural protein # Family: family:all:3249 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764325;genbank:gi:115315639;genbank:GeneI D:5176582 Length = 301 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 219 WNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDA 264 W + + NK + G F PD V + ++ IPN T A Sbjct: 191 WGDQAKDFANKMEAGLFIMQPDTVLAGAITLV----APVIPNVTTA 232 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%) Query: 233 GAFASSPDAVRGNSFAMIYIDECAFIP-NFTDAWLAIQPVISSGRKSKILITTTPNGLNH 291 G +S D V+G + A + DE A +P +F + A V SK+ P+G H Sbjct: 118 GKDEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTG----SKMWFNCNPSGPFH 173 Query: 292 FYDI 295 ++ + Sbjct: 174 WFKL 177 >gi|4395|lcl|protein:vir:98555 Length: 589 # NCBI annotation: gp3 # Family: family:all:169 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958058;genbank:gi:41057355;genbank:GeneID :2744226 Length = 589 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 8/58 (13%) Query: 250 IYIDECAFIPNFTDAWLAIQPVISSGRKSKILITT---TPNGLNH-FYDIWNAAVEGK 303 +Y+DE +IPNF ++ V S K L +T TP+ L H Y W+ + K Sbjct: 250 LYVDEIFWIPNFQK----LRKVASGMASQKHLRSTYFSTPSTLAHGAYPFWSGELFNK 303 >gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: PacB # Family: family:all:144 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006576;genbank:gi:46401730;genbank:GeneID :2777432 Length = 494 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 13/42 (30%), Positives = 23/42 (54%) Query: 378 DETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDIT 419 DE E + K +G +VA +D A G G+D ++I+ ++ Sbjct: 270 DEVERATRRKVKIAKGWGWVACVDVAGGTGRDKSVINIMMVS 311 >gi|11523|lcl|protein:vir:78781 Length: 604 # NCBI annotation: putative terminase large subunit # Family: family:all:169 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285645;genbank:gi:148727151;genbank:Ge neID:5220131 Length = 604 Score = 24.3 bits (51), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 224 IELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILIT 283 I L N ++ +++ ++ + S +YIDE +IPNF + + K + Sbjct: 238 IVLSNGAELHFCSTNSNSAQSRS-GNVYIDEYFWIPNFEKLSDVASAMATQSHWRKTYFS 296 Query: 284 TTPNGLNHFYDIWNA 298 T + ++ Y W Sbjct: 297 TPSSKVHEAYRFWTG 311 >gi|8220|lcl|protein:vir:101493 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655387;genbank:gi:109522575;genbank:GeneI D:4157565 Length = 588 Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust. Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 281 LITTTPNGLNHFYD 294 L T+TP G NHF+D Sbjct: 195 LHTSTPEGKNHFHD 208 >gi|9070|lcl|protein:vir:102238 Length: 588 # NCBI annotation: gp8 # Family: family:all:147 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655204;genbank:gi:109522784;genbank:GeneI D:4157477 Length = 588 Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust. Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 281 LITTTPNGLNHFYD 294 L T+TP G NHF+D Sbjct: 195 LHTSTPEGKNHFHD 208 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 8/80 (10%) Query: 236 ASSPDAVRGNSFAMIYIDECAFIPNFTDAWLAIQPVISSGRKSKILITTTPNGLNHFYDI 295 ++ P+ + G ++++E A + + ++ G +K TTTP G N +YD+ Sbjct: 150 SAVPERLVGEGLTGVHMEEAAKQKEVVWKQMIMPTLMDFGGWAKF--TTTPEGKNWYYDL 207 Query: 296 WNAAVEGKSGFVPYTAIWTS 315 A+ P T W++ Sbjct: 208 HQKALR------PSTLNWSA 221 >gi|18685|lcl|protein:vir:5692 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839851;genbank:gi:30065706;genbank:GeneID :1260600 Length = 590 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 250 IYIDECAFIPNFTDAWLAIQPVISSGRKSKILIT----TTPNGLNH-FYDIWNA 298 +Y+DE +IPNF + ++SG S+ + +TP+ L H Y W+ Sbjct: 250 LYVDEIFWIPNFQ-----VLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 >gi|16979|lcl|protein:vir:6059 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878200;genbank:gi:33438899;genbank:GeneID :1457734 Length = 590 Score = 23.5 bits (49), Expect = 7.1, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 250 IYIDECAFIPNFTDAWLAIQPVISSGRKSKILIT----TTPNGLNH-FYDIWNA 298 +Y+DE +IPNF + ++SG S+ + +TP+ L H Y W+ Sbjct: 250 LYVDEIFWIPNFQ-----VLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 >gi|17332|lcl|protein:vir:2014 Length: 590 # NCBI annotation: gpP # Family: family:all:169 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046758;genbank:gi:9630329;genbank:GeneID: 1261531 Length = 590 Score = 23.5 bits (49), Expect = 7.2, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 10/54 (18%) Query: 250 IYIDECAFIPNFTDAWLAIQPVISSGRKSKILIT----TTPNGLNH-FYDIWNA 298 +Y+DE +IPNF + ++SG S+ + +TP+ L H Y W+ Sbjct: 250 LYVDEIFWIPNFQ-----VLRKVASGMASQSHLRSTYFSTPSTLAHDAYPFWSG 298 >gi|19089|lcl|protein:vir:1668 Length: 301 # NCBI annotation: major structural protein # Family: family:all:3249 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044957;genbank:gi:9629664;genbank:GeneID: 1261264 Length = 301 Score = 23.5 bits (49), Expect = 7.7, Method: Compositional matrix adjust. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 219 WNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDA 264 W + + + K + G F PD V + ++ IPN T A Sbjct: 191 WGEQAKDFAKKMESGLFIMQPDTVLAGAITLV----APVIPNVTTA 232 >gi|23580|lcl|protein:vir:102747 Length: 622 # NCBI annotation: terminase large subunit # Family: family:all:11211 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874075;genbank:gi:118197682;genbank:GeneI D:4495939 Length = 622 Score = 23.5 bits (49), Expect = 8.4, Method: Compositional matrix adjust. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 13/124 (10%) Query: 373 SWIDIDETETNFYQYKKPEEGHKYVAVLDPAEGRGQDYHAMHIIDITTLPFEQVAVYHSN 432 S+ ID F + +EG +YV V DP GR + I + F Y+S Sbjct: 354 SYEKIDPYNLEFKDWFYGKEGVEYVLVADPGLGRVSTEGDAYAIALGHREF-----YYSK 408 Query: 433 RTSHLILP--DILLRYLT-MYNEAWIYIELNSTGHSVAKSLFSELEYE--NVICDSYNDL 487 + P D++ R+ M++E + I + H++ + L E ++ + D YN Sbjct: 409 EGKLIPRPVVDLVFRFTGYMFDEEEVQI---NAVHNLIEKLIEERKFNITHTFFDIYNSA 465 Query: 488 GMKQ 491 Q Sbjct: 466 STAQ 469 >gi|15558|lcl|protein:vir:867 Length: 301 # NCBI annotation: putative major structural protein # Family: family:all:3249 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047126;genbank:gi:9630579;genbank:GeneID: 1261772 Length = 301 Score = 23.1 bits (48), Expect = 9.0, Method: Compositional matrix adjust. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 219 WNKGSIELDNKCKIGAFASSPDAVRGNSFAMIYIDECAFIPNFTDA 264 W + + + K + G F PD V + ++ IPN T A Sbjct: 191 WGEQAKDFAKKMESGLFIMQPDTVLAGAITLV----APVIPNVTTA 232 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.134 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,134 Number of Sequences: 514 Number of extensions: 14141 Number of successful extensions: 139 Number of sequences better than 100.0: 62 Number of HSP's better than 100.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 73 length of query: 609 length of database: 206,069 effective HSP length: 77 effective length of query: 532 effective length of database: 166,491 effective search space: 88573212 effective search space used: 88573212 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)