BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:96672|NCBI_annot:ORF106|genbank:acc:YP_2 38555;genbank:gi:66391358;genbank:GeneID:5130454 (121 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|23709|lcl|protein:vir:96672 Length: 121 # NCBI annotation: OR... 249 8e-69 gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hyp... 218 2e-59 gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: OR... 218 2e-59 gi|24940|lcl|protein:vir:80620 Length: 140 # NCBI annotation: gp... 185 2e-49 gi|25129|lcl|protein:vir:80710 Length: 140 # NCBI annotation: st... 179 1e-47 gi|21558|lcl|protein:vir:63764 Length: 123 # NCBI annotation: gp... 160 4e-42 gi|24314|lcl|protein:vir:100800 Length: 155 # NCBI annotation: h... 136 8e-35 gi|5997|lcl|protein:vir:95545 Length: 195 # NCBI annotation: hyp... 23 1.4 gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: pu... 23 1.5 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 22 2.3 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 22 2.3 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 20 7.0 >gi|23709|lcl|protein:vir:96672 Length: 121 # NCBI annotation: ORF106 # Family: family:all:2792 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238555;genbank:gi:66391358;genbank:GeneID :5130454 Length = 121 Score = 249 bits (636), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 121/121 (100%), Positives = 121/121 (100%) Query: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE Sbjct: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 Query: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNYELRSF 120 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNYELRSF Sbjct: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNYELRSF 120 Query: 121 T 121 T Sbjct: 121 T 121 >gi|9414|lcl|protein:vir:99300 Length: 142 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024480;genbank:gi:48696439;genbank:GeneID :2948028 Length = 142 Score = 218 bits (555), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 101/115 (87%), Positives = 110/115 (95%) Query: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 MAS+AKQTVHTGNTV+LMIKGKPVGRAQSASG R YGT GVYEIGSIMPQEHVYL+YEG Sbjct: 1 MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGT 60 Query: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNY 115 +TVERLRMKKENFA LGYASLGEEILKKDIIDI+V+DNLTK+V++SYHGCSANNY Sbjct: 61 ITVERLRMKKENFADLGYASLGEEILKKDIIDILVVDNLTKQVIISYHGCSANNY 115 >gi|22597|lcl|protein:vir:95739 Length: 142 # NCBI annotation: ORF105 # Family: family:all:2792 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240911;genbank:gi:66395051;genbank:GeneID :5132680 Length = 142 Score = 218 bits (555), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 101/115 (87%), Positives = 110/115 (95%) Query: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 MAS+AKQTVHTGNTV+LMIKGKPVGRAQSASG R YGT GVYEIGSIMPQEHVYL+YEG Sbjct: 1 MASEAKQTVHTGNTVLLMIKGKPVGRAQSASGQREYGTTGVYEIGSIMPQEHVYLRYEGT 60 Query: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNY 115 +TVERLRMKKENFA LGYASLGEEILKKDIIDI+V+DNLTK+V++SYHGCSANNY Sbjct: 61 ITVERLRMKKENFADLGYASLGEEILKKDIIDILVVDNLTKQVIISYHGCSANNY 115 >gi|24940|lcl|protein:vir:80620 Length: 140 # NCBI annotation: gp8 # Family: family:all:2792 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468474;genbank:gi:157325049;genbank:Ge neID:5601587 Length = 140 Score = 185 bits (469), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 87/115 (75%), Positives = 99/115 (86%) Query: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 MAS QTVHTGNTV LMIKGK VGR QSASG RSYGT GVYEIGSIMPQEHVYLKYEG Sbjct: 1 MASVTNQTVHTGNTVYLMIKGKIVGRCQSASGERSYGTTGVYEIGSIMPQEHVYLKYEGS 60 Query: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNY 115 LTV+RLRM+KE+ AKLG +LGE+ILK+D+IDIV++DN TKEV+++Y GCSA Y Sbjct: 61 LTVDRLRMRKEDLAKLGITALGEDILKRDVIDIVMMDNTTKEVIIAYRGCSAETY 115 >gi|25129|lcl|protein:vir:80710 Length: 140 # NCBI annotation: structural protein # Family: family:all:2792 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504133;genbank:gi:158079320;genbank:Ge neID:5666358 Length = 140 Score = 179 bits (453), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 85/121 (70%), Positives = 102/121 (84%), Gaps = 1/121 (0%) Query: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 MAS QTVHTGNTV LMI K +GRAQSASG R YGT+G+YEIGSIMPQEHVYLKYEG Sbjct: 1 MASVGNQTVHTGNTVYLMIGNKIIGRAQSASGERQYGTQGIYEIGSIMPQEHVYLKYEGT 60 Query: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNYELRSF 120 +T+ER+RMKKE+ A LG +LGE+IL++DIIDIV++DNLTKE++V+Y GCSA +Y SF Sbjct: 61 ITLERMRMKKEDLASLGITALGEDILQRDIIDIVMMDNLTKEIVVAYRGCSAISYS-ESF 119 Query: 121 T 121 T Sbjct: 120 T 120 >gi|21558|lcl|protein:vir:63764 Length: 123 # NCBI annotation: gp25 # Family: family:all:2792 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547630;genbank:GeneID:3783515 Length = 123 Score = 160 bits (405), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 74/98 (75%), Positives = 86/98 (87%) Query: 18 MIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGELTVERLRMKKENFAKLG 77 MIKGK VGR QSASG RSYGT GVYEIGSIMPQEHVYLKYEG LTV+RLRM+KE+ AKLG Sbjct: 1 MIKGKIVGRCQSASGERSYGTTGVYEIGSIMPQEHVYLKYEGSLTVDRLRMRKEDLAKLG 60 Query: 78 YASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNY 115 +LGE+ILK+D+IDIV++DN TKEV+++Y GCSA Y Sbjct: 61 ITALGEDILKRDVIDIVMMDNTTKEVIIAYRGCSAETY 98 >gi|24314|lcl|protein:vir:100800 Length: 155 # NCBI annotation: hypothetical protein # Family: family:all:2792 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164737;genbank:gi:56693150;genbank:GeneID :3197433 Length = 155 Score = 136 bits (343), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 60/116 (51%), Positives = 85/116 (73%) Query: 1 MASQAKQTVHTGNTVMLMIKGKPVGRAQSASGTRSYGTEGVYEIGSIMPQEHVYLKYEGE 60 MA+ QTV TGN + +M+K +GRAQS +G RS+GT GVYE+G+IMP+EHV+LKY G Sbjct: 1 MATVKNQTVETGNRIYIMVKSAVLGRAQSLTGDRSFGTTGVYELGTIMPREHVFLKYTGT 60 Query: 61 LTVERLRMKKENFAKLGYASLGEEILKKDIIDIVVIDNLTKEVLVSYHGCSANNYE 116 ++VER RM NF A+LGE++LK D++DI V DN T ++++ Y GCS ++Y+ Sbjct: 61 VSVERYRMTTNNFTNTKVAALGEDVLKIDVLDIAVKDNTTGKLIIVYRGCSIDDYQ 116 >gi|5997|lcl|protein:vir:95545 Length: 195 # NCBI annotation: hypothetical protein # Family: family:all:10964 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293365;genbank:gi:148912786;genbank:Ge neID:5228197 Length = 195 Score = 22.7 bits (47), Expect = 1.4, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Query: 24 VGRAQSASGTRSYG-TEGVYEIGSIMPQEHVYLKYEGELTVER 65 + R SAS T + VY++ P V+ Y G +TV R Sbjct: 147 ISREISASDTAALAWASAVYDVDVTYPDGTVHRYYSGPITVSR 189 >gi|4006|lcl|protein:vir:100188 Length: 210 # NCBI annotation: putative major tail protein # Family: family:all:1028 # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025036;genbank:gi:48697269;genbank:GeneI D:2948286 Length = 210 Score = 22.7 bits (47), Expect = 1.5, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 11/16 (68%) Query: 30 ASGTRSYGTEGVYEIG 45 A T GT+GVY++G Sbjct: 22 ADATNGLGTDGVYQVG 37 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 21.9 bits (45), Expect = 2.3, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 16/26 (61%) Query: 43 EIGSIMPQEHVYLKYEGELTVERLRM 68 E G+I P+EH+ + +L + +R+ Sbjct: 313 EFGAIFPREHLQYYHAADLPKQFVRV 338 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 21.9 bits (45), Expect = 2.3, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 16/26 (61%) Query: 43 EIGSIMPQEHVYLKYEGELTVERLRM 68 E G+I P+EH+ + +L + +R+ Sbjct: 313 EFGAIFPREHLQYYHAADLPKQFVRV 338 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 20.4 bits (41), Expect = 7.0, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 10/22 (45%) Query: 21 GKPVGRAQSASGTRSYGTEGVY 42 GKPV + A T Y T Y Sbjct: 412 GKPVDKNNHAMDTSRYATNYFY 433 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.314 0.132 0.361 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,580 Number of Sequences: 514 Number of extensions: 1860 Number of successful extensions: 12 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of query: 121 length of database: 206,069 effective HSP length: 62 effective length of query: 59 effective length of database: 174,201 effective search space: 10277859 effective search space used: 10277859 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.1 bits) S2: 32 (16.9 bits)