Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiJL001 | Genbank acc : NC_006938

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 5) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 90

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	67	lcl\|NC_006938.1_cdsid_YP_223991.1	HHsearch (proba=100.00%)
Portal	60	lcl\|NC_006938.1_cdsid_YP_223984.1	HHsearch (proba=100.00%)
TermL	59	lcl\|NC_006938.1_cdsid_YP_223983.1	Blast (e-value=1e-146)
MTP	78	lcl\|NC_006938.1_cdsid_YP_224002.1	Blast (e-value=1e-135)
Sheath	NOT FOUND
Ad1	75	lcl\|NC_006938.1_cdsid_YP_223999.1	HHsearch (proba=100.00%)
Hc1	76	lcl\|NC_006938.1_cdsid_YP_224000.1	HHsearch (proba=87.70%)
Ne1	81	lcl\|NC_006938.1_cdsid_YP_224005.1	HHsearch (proba=100.00%)
Tc1	77	lcl\|NC_006938.1_cdsid_YP_224001.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ne1<->Hc1	5	2
Ne1<->Ad1	6	3
Ne1<->Tc1	4	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:5974 protein:vir:80446 protein:vir:78387	SPP1 BcepGomr SETP3	36 % 36 % 33 %
Portal	protein:vir:95149 protein:vir:95014 protein:vir:94956	PA73 KS7 Xp15	26 % 25 % 25 %
TermL	protein:vir:97250 protein:vir:80432 protein:vir:95130	M6 BcepGomr PA73	53 % 43 % 42 %
MTP	protein:vir:97240 protein:vir:95133 protein:vir:80398	M6 PA73 BcepGomr	55 % 48 % 44 %
Ad1	protein:vir:97267 protein:vir:80389 protein:vir:95176	M6 BcepGomr PA73	38 % 32 % 32 %
Hc1	protein:vir:80382 protein:vir:95145	BcepGomr PA73	22 % 23 %
Ne1	protein:vir:97190 protein:vir:95157 protein:vir:78380	M6 PA73 SETP3	54 % 38 % 30 %
Tc1	protein:vir:97211 protein:vir:80429 protein:vir:95155	M6 BcepGomr PA73	50 % 33 % 33 %