Query lcl|Aclame:protein:vir:98567|NCBI_annot:gp1|genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Match_columns 340 No_of_seqs 227 out of 1024 Neff 8.7 Searched_HMMs 1612 Date Sat Nov 30 19:47:31 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_38 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_38_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:98567 Length: 340 100.0 5E-112 3E-115 630.7 34.5 340 1-340 1-340 (340) 2 protein:vir:5691 Length: 344 # 100.0 2E-110 1E-113 622.4 33.8 340 1-340 1-343 (344) 3 protein:vir:6058 Length: 344 # 100.0 2E-109 1E-112 617.0 34.5 340 1-340 1-343 (344) 4 protein:vir:2013 Length: 344 # 100.0 2E-109 1E-112 616.5 34.2 340 1-340 1-343 (344) 5 protein:vir:79207 Length: 351 100.0 1E-108 6E-112 612.7 34.6 340 1-340 1-348 (351) 6 protein:vir:103971 Length: 376 100.0 1E-108 9E-112 611.9 33.1 340 1-340 26-373 (376) 7 protein:vir:78191 Length: 351 100.0 6E-108 4E-111 608.5 34.5 340 1-340 1-348 (351) 8 protein:vir:1150 Length: 350 # 100.0 2E-107 1E-110 606.0 33.7 339 1-339 1-350 (350) 9 protein:vir:79150 Length: 368 100.0 7E-105 5E-108 591.5 32.8 340 1-340 1-356 (368) 10 protein:vir:100328 Length: 346 100.0 3E-103 2E-106 583.0 33.5 340 1-340 1-345 (346) 11 protein:vir:267 Length: 348 # 100.0 1E-101 6E-105 574.3 33.0 336 1-340 1-344 (348) 12 protein:vir:3780 Length: 345 # 100.0 8E-100 5E-103 564.0 32.6 334 1-338 1-345 (345) 13 protein:vir:78749 Length: 337 100.0 2.4E-99 1E-102 561.3 32.0 332 1-340 1-335 (337) 14 protein:vir:3743 Length: 345 # 100.0 1.7E-98 1E-101 556.7 33.8 334 1-338 1-345 (345) 15 protein:vir:4194 Length: 540 # 100.0 1.2E-68 7.7E-72 392.9 30.2 319 22-340 1-377 (540) 16 protein:vir:4156 Length: 542 # 100.0 2.4E-67 1.5E-70 385.8 30.3 326 15-340 1-379 (542) 17 protein:vir:1884 Length: 424 # 100.0 2E-62 1.2E-65 358.9 28.1 325 1-340 1-364 (424) 18 protein:vir:189 Length: 424 # 100.0 7.1E-62 4.4E-65 355.8 28.0 325 1-340 1-364 (424) 19 protein:vir:80644 Length: 551 100.0 3.6E-61 2.2E-64 352.0 29.8 327 1-340 1-427 (551) 20 protein:vir:63755 Length: 547 100.0 6.6E-61 4.1E-64 350.5 28.8 320 1-340 31-425 (547) 21 protein:vir:101648 Length: 518 100.0 1.7E-60 1.1E-63 348.3 28.2 330 1-340 1-354 (518) 22 protein:vir:100249 Length: 431 100.0 5.4E-60 3.3E-63 345.5 30.6 329 1-340 1-369 (431) 23 protein:vir:99452 Length: 651 100.0 9.3E-61 5.8E-64 349.7 25.3 331 1-340 1-466 (651) 24 protein:vir:4509 Length: 424 # 100.0 7E-60 4.3E-63 344.9 27.8 320 1-340 17-362 (424) 25 protein:vir:80796 Length: 574 100.0 1.3E-59 8.1E-63 343.4 28.8 321 1-340 27-431 (574) 26 protein:vir:4337 Length: 434 # 100.0 2E-59 1.2E-62 342.4 29.7 328 1-340 1-361 (434) 27 protein:vir:93610 Length: 454 100.0 9E-60 5.6E-63 344.3 27.6 325 1-340 4-355 (454) 28 protein:vir:7853 Length: 518 # 100.0 1.7E-59 1.1E-62 342.8 28.7 331 1-340 1-354 (518) 29 protein:vir:100150 Length: 437 100.0 2E-59 1.2E-62 342.4 27.6 324 1-340 1-358 (437) 30 protein:vir:95599 Length: 563 100.0 5.2E-59 3.2E-62 340.1 29.5 316 1-340 46-434 (563) 31 protein:vir:99312 Length: 563 100.0 5.2E-59 3.2E-62 340.1 29.5 316 1-340 46-434 (563) 32 protein:vir:94666 Length: 723 100.0 2.2E-59 1.4E-62 342.2 27.3 312 20-340 1-346 (723) 33 protein:vir:8100 Length: 466 # 100.0 1.4E-58 8.8E-62 337.7 29.3 333 1-340 1-392 (466) 34 protein:vir:8317 Length: 409 # 100.0 1.1E-58 6.8E-62 338.3 27.2 319 1-340 32-367 (409) 35 protein:vir:1380 Length: 422 # 100.0 7.3E-58 4.5E-61 333.8 28.8 322 1-340 7-360 (422) 36 protein:vir:10362 Length: 432 100.0 3.4E-58 2.1E-61 335.7 26.7 324 1-340 10-360 (432) 37 protein:vir:101647 Length: 460 100.0 3.1E-58 1.9E-61 335.9 26.5 333 1-340 1-395 (460) 38 protein:vir:96579 Length: 576 100.0 3.3E-57 2E-60 330.3 31.5 335 1-340 38-433 (576) 39 protein:vir:100691 Length: 535 100.0 2.2E-57 1.4E-60 331.2 30.1 330 1-340 13-425 (535) 40 protein:vir:105064 Length: 421 100.0 7.9E-58 4.9E-61 333.6 26.5 315 1-340 6-350 (421) 41 protein:vir:102080 Length: 429 100.0 7.1E-58 4.4E-61 333.9 25.9 322 1-340 1-358 (429) 42 protein:vir:4454 Length: 414 # 100.0 1.2E-57 7.7E-61 332.6 27.2 324 1-340 1-347 (414) 43 protein:vir:1326 Length: 457 # 100.0 1.1E-57 6.9E-61 332.8 26.1 325 1-340 1-363 (457) 44 protein:vir:102855 Length: 432 100.0 1.2E-57 7.4E-61 332.6 26.3 321 1-340 11-361 (432) 45 protein:vir:105002 Length: 432 100.0 1.2E-57 7.4E-61 332.6 26.3 321 1-340 11-361 (432) 46 protein:vir:107605 Length: 432 100.0 1.2E-57 7.4E-61 332.6 26.3 321 1-340 11-361 (432) 47 protein:vir:5737 Length: 419 # 100.0 4.4E-57 2.8E-60 329.5 29.2 320 1-340 1-348 (419) 48 protein:vir:3153 Length: 467 # 100.0 6.2E-57 3.8E-60 328.8 29.8 300 40-340 1-374 (467) 49 protein:vir:81072 Length: 432 100.0 5.5E-57 3.4E-60 329.0 29.1 323 1-340 1-360 (432) 50 protein:vir:3868 Length: 417 # 100.0 2.3E-57 1.4E-60 331.1 26.5 318 1-340 1-339 (417) 51 protein:vir:98853 Length: 219 100.0 4.7E-58 2.9E-61 334.9 22.8 210 131-340 1-219 (219) 52 protein:vir:1431 Length: 419 # 100.0 2.4E-57 1.5E-60 331.0 26.0 320 1-340 1-347 (419) 53 protein:vir:1082 Length: 359 # 100.0 1.5E-57 9.5E-61 332.1 24.7 321 1-340 1-330 (359) 54 protein:vir:81152 Length: 411 100.0 1.8E-57 1.1E-60 331.7 24.5 319 1-340 1-352 (411) 55 protein:vir:97060 Length: 432 100.0 4.6E-57 2.9E-60 329.4 26.4 321 1-340 10-360 (432) 56 protein:vir:6240 Length: 457 # 100.0 1.1E-56 6.5E-60 327.5 27.8 324 1-340 1-363 (457) 57 protein:vir:483 Length: 413 # 100.0 2.1E-56 1.3E-59 325.8 28.2 323 1-340 1-346 (413) 58 protein:vir:80333 Length: 419 100.0 6.7E-57 4.2E-60 328.5 25.4 322 1-340 1-347 (419) 59 protein:vir:102118 Length: 409 100.0 1E-56 6.2E-60 327.6 26.2 318 1-340 1-350 (409) 60 protein:vir:98396 Length: 441 100.0 2E-56 1.2E-59 325.9 27.8 318 1-340 14-368 (441) 61 protein:vir:79984 Length: 441 100.0 2.9E-56 1.8E-59 325.0 27.8 318 1-340 14-368 (441) 62 protein:vir:9408 Length: 441 # 100.0 2.9E-56 1.8E-59 325.0 27.8 318 1-340 14-368 (441) 63 protein:vir:93943 Length: 409 100.0 5.4E-56 3.4E-59 323.6 27.9 319 1-340 1-343 (409) 64 protein:vir:81218 Length: 423 100.0 5.4E-56 3.4E-59 323.6 27.4 326 1-340 1-364 (423) 65 protein:vir:9702 Length: 406 # 100.0 6.7E-56 4.1E-59 323.1 26.1 316 1-340 1-336 (406) 66 protein:vir:8418 Length: 409 # 100.0 1.4E-55 8.4E-59 321.4 27.5 321 1-340 1-341 (409) 67 protein:vir:94426 Length: 409 100.0 4E-55 2.5E-58 318.8 28.0 317 1-340 1-343 (409) 68 protein:vir:100187 Length: 385 100.0 8.7E-55 5.4E-58 317.0 28.7 317 1-340 4-331 (385) 69 protein:vir:1266 Length: 416 # 100.0 2.8E-55 1.8E-58 319.6 26.1 320 1-340 1-346 (416) 70 protein:vir:2683 Length: 412 # 100.0 8.4E-55 5.2E-58 317.0 27.8 316 1-340 1-346 (412) 71 protein:vir:102727 Length: 945 100.0 6E-55 3.7E-58 317.8 26.6 332 1-340 71-451 (945) 72 protein:vir:96980 Length: 409 100.0 1.5E-54 9.4E-58 315.6 27.9 319 1-340 1-343 (409) 73 protein:vir:4598 Length: 416 # 100.0 1E-54 6.4E-58 316.5 26.7 315 1-340 4-343 (416) 74 protein:vir:81095 Length: 416 100.0 1E-54 6.4E-58 316.5 26.7 315 1-340 4-343 (416) 75 protein:vir:4854 Length: 386 # 100.0 2.2E-53 1.4E-56 309.2 29.1 319 1-340 1-330 (386) 76 protein:vir:1023 Length: 392 # 100.0 1.8E-53 1.1E-56 309.7 27.7 319 1-340 3-337 (392) 77 protein:vir:3989 Length: 392 # 100.0 1.8E-53 1.1E-56 309.7 27.7 319 1-340 3-337 (392) 78 protein:vir:100882 Length: 383 100.0 4.9E-53 3.1E-56 307.4 29.2 317 1-340 4-331 (383) 79 protein:vir:7407 Length: 392 # 100.0 2.5E-53 1.5E-56 309.0 27.5 311 1-340 6-337 (392) 80 protein:vir:4828 Length: 382 # 100.0 4.5E-53 2.8E-56 307.6 28.9 315 1-340 1-327 (382) 81 protein:vir:9359 Length: 348 # 100.0 5.3E-53 3.3E-56 307.2 28.2 269 49-340 1-282 (348) 82 protein:vir:3843 Length: 397 # 100.0 1.8E-52 1.1E-55 304.3 29.1 313 1-340 1-327 (397) 83 protein:vir:79772 Length: 648 100.0 3.6E-52 2.2E-55 302.6 29.5 331 1-340 1-419 (648) 84 protein:vir:960 Length: 413 # 100.0 2.7E-52 1.7E-55 303.3 27.9 325 1-340 4-353 (413) 85 protein:vir:4995 Length: 384 # 100.0 3.5E-52 2.2E-55 302.6 26.7 323 1-340 1-345 (384) 86 protein:vir:4952 Length: 386 # 100.0 6.1E-51 3.8E-54 295.9 28.0 318 1-340 1-330 (386) 87 protein:vir:78641 Length: 278 100.0 1.2E-50 7.1E-54 294.4 28.2 268 49-339 1-278 (278) 88 protein:vir:104259 Length: 403 100.0 1.8E-51 1.1E-54 298.8 23.6 315 1-340 1-336 (403) 89 protein:vir:95378 Length: 406 100.0 1.3E-48 8.1E-52 283.1 28.9 318 1-340 1-338 (406) 90 protein:vir:80134 Length: 403 100.0 5.5E-48 3.4E-51 279.7 25.9 318 1-340 1-335 (403) 91 protein:vir:6210 Length: 394 # 100.0 5.6E-48 3.5E-51 279.6 25.0 306 1-340 1-330 (394) 92 protein:vir:101289 Length: 395 100.0 4.8E-44 3E-47 258.1 24.9 304 1-340 1-322 (395) 93 protein:vir:100650 Length: 395 100.0 4.8E-44 3E-47 258.1 24.9 304 1-340 1-322 (395) 94 protein:vir:9507 Length: 395 # 100.0 4.8E-44 3E-47 258.1 24.9 304 1-340 1-322 (395) 95 protein:vir:95965 Length: 385 100.0 1.9E-43 1.2E-46 254.8 22.6 303 1-340 1-326 (385) 96 protein:vir:78310 Length: 376 100.0 2E-41 1.2E-44 243.7 24.0 303 1-340 1-321 (376) 97 protein:vir:9641 Length: 395 # 100.0 2.4E-39 1.5E-42 232.4 23.4 306 1-340 1-334 (395) 98 protein:vir:4089 Length: 395 # 100.0 1.1E-38 6.8E-42 228.7 23.9 308 1-340 1-328 (395) 99 protein:vir:98643 Length: 395 100.0 5E-38 3.1E-41 225.1 26.0 309 1-340 1-334 (395) 100 protein:vir:94002 Length: 378 100.0 2.3E-38 1.4E-41 227.0 21.9 277 1-340 1-310 (378) 101 protein:vir:93867 Length: 378 100.0 2E-38 1.3E-41 227.2 20.5 278 1-340 1-310 (378) 102 protein:vir:1661 Length: 378 # 100.0 1.4E-36 8.4E-40 217.2 20.1 279 1-340 1-310 (378) 103 protein:vir:94869 Length: 378 100.0 5.8E-35 3.6E-38 208.3 20.9 278 1-340 1-310 (378) 104 protein:vir:858 Length: 378 # 100.0 1.6E-34 1E-37 205.9 21.5 277 1-340 1-310 (378) 105 protein:vir:4698 Length: 251 # 100.0 4.2E-34 2.6E-37 203.6 20.1 232 1-246 1-251 (251) 106 protein:vir:5249 Length: 437 # 99.5 2.5E-15 1.5E-18 100.7 20.5 306 1-340 1-363 (437) 107 protein:vir:77981 Length: 448 99.3 4.6E-12 2.9E-15 82.7 22.3 319 1-340 1-380 (448) 108 protein:vir:79511 Length: 448 99.2 1.1E-11 6.6E-15 80.7 21.8 316 1-340 1-380 (448) 109 protein:vir:79647 Length: 435 99.2 1.1E-11 7.1E-15 80.6 20.9 308 1-340 5-370 (435) 110 protein:vir:108215 Length: 469 99.1 5.1E-10 3.2E-13 71.5 25.0 314 1-340 1-383 (469) 111 protein:vir:107742 Length: 537 99.0 7.1E-10 4.4E-13 70.7 23.6 320 1-340 48-441 (537) 112 protein:vir:94049 Length: 532 99.0 9.4E-10 5.8E-13 70.1 22.7 321 1-340 23-428 (532) 113 protein:vir:103860 Length: 528 98.9 6.3E-09 3.9E-12 65.5 24.3 324 1-340 1-375 (528) 114 protein:vir:107662 Length: 427 98.9 1.3E-09 8.3E-13 69.2 19.5 299 20-340 1-359 (427) 115 protein:vir:104338 Length: 422 98.9 2.5E-09 1.6E-12 67.7 20.9 300 1-340 1-358 (422) 116 protein:vir:80040 Length: 461 98.9 2.8E-09 1.7E-12 67.5 20.8 317 1-340 1-394 (461) 117 protein:vir:99232 Length: 526 98.9 1.4E-08 8.8E-12 63.6 24.3 323 1-340 1-373 (526) 118 protein:vir:1986 Length: 512 # 98.7 4.9E-08 3E-11 60.7 24.0 318 1-340 1-371 (512) 119 protein:vir:79233 Length: 526 98.7 6.9E-08 4.3E-11 59.8 24.8 323 1-340 1-373 (526) 120 protein:vir:99563 Length: 862 98.7 5.4E-08 3.4E-11 60.4 23.8 320 1-340 39-471 (862) 121 protein:vir:79063 Length: 491 98.7 1.1E-07 7.1E-11 58.6 25.8 313 1-340 1-358 (491) 122 protein:vir:107880 Length: 491 98.7 1.3E-07 8.2E-11 58.3 24.4 308 1-340 1-358 (491) 123 protein:vir:99853 Length: 488 98.5 3.9E-07 2.4E-10 55.7 23.4 312 1-340 1-349 (488) 124 protein:vir:79538 Length: 502 98.5 2.9E-08 1.8E-11 61.9 16.3 315 1-340 11-412 (502) 125 protein:vir:389 Length: 530 # 98.4 5.4E-08 3.3E-11 60.4 16.1 318 1-340 1-443 (530) 126 protein:vir:98816 Length: 446 98.4 2.6E-07 1.6E-10 56.7 18.5 324 1-340 3-407 (446) 127 protein:vir:3420 Length: 533 # 98.3 3.1E-07 1.9E-10 56.2 17.8 318 1-340 1-446 (533) 128 protein:vir:96738 Length: 505 98.3 2.5E-07 1.6E-10 56.7 17.2 319 1-340 1-422 (505) 129 protein:vir:78161 Length: 355 98.3 9.8E-07 6.1E-10 53.5 19.1 223 109-340 1-253 (355) 130 protein:vir:96068 Length: 765 98.2 2.1E-06 1.3E-09 51.8 22.3 322 1-340 37-446 (765) 131 protein:vir:95542 Length: 548 98.2 4.1E-07 2.6E-10 55.6 16.4 313 1-340 11-416 (548) 132 protein:vir:6382 Length: 553 # 98.1 6.6E-07 4.1E-10 54.5 15.6 318 1-340 1-460 (553) 133 protein:vir:95254 Length: 488 98.1 2.4E-06 1.5E-09 51.4 17.7 312 1-340 1-403 (488) 134 protein:vir:10321 Length: 495 97.6 2.2E-05 1.3E-08 46.2 16.4 323 1-340 1-409 (495) 135 protein:vir:9568 Length: 410 # 96.0 0.0012 7.4E-07 36.6 19.4 282 1-340 1-359 (410) 136 protein:vir:105782 Length: 449 95.9 0.0014 8.4E-07 36.3 14.4 312 1-340 1-390 (449) 137 protein:vir:8654 Length: 629 # 95.7 0.00018 1.1E-07 41.1 8.1 334 1-340 1-420 (629) 138 protein:vir:99088 Length: 629 95.5 0.00022 1.4E-07 40.6 7.9 334 1-340 1-420 (629) 139 protein:vir:94742 Length: 409 95.4 0.0022 1.3E-06 35.2 22.1 285 32-340 1-372 (409) 140 protein:vir:1634 Length: 409 # 94.7 0.0036 2.2E-06 34.0 21.0 285 32-340 1-372 (409) 141 protein:vir:3648 Length: 695 # 93.7 0.0065 4E-06 32.6 17.0 313 1-340 1-468 (695) 142 protein:vir:4073 Length: 279 # 93.6 0.0027 1.7E-06 34.7 9.4 256 20-340 1-274 (279) 143 protein:vir:9751 Length: 422 # 93.0 0.009 5.6E-06 31.8 21.0 281 32-340 1-372 (422) 144 protein:vir:102426 Length: 631 93.0 0.0012 7.6E-07 36.6 6.4 336 1-340 1-425 (631) 145 protein:vir:5839 Length: 533 # 92.9 0.0096 6E-06 31.6 18.0 317 1-340 37-405 (533) 146 protein:vir:97447 Length: 474 92.6 0.011 6.6E-06 31.4 20.2 269 1-340 54-405 (474) 147 protein:vir:94498 Length: 474 92.6 0.011 6.6E-06 31.4 20.2 269 1-340 54-405 (474) 148 protein:vir:93747 Length: 472 92.5 0.011 6.9E-06 31.3 20.8 297 1-340 36-402 (472) 149 protein:vir:101541 Length: 694 92.5 0.011 7E-06 31.3 18.1 317 1-340 1-467 (694) 150 protein:vir:105889 Length: 474 92.4 0.012 7.3E-06 31.2 21.9 278 1-340 51-398 (474) 151 protein:vir:94101 Length: 474 92.4 0.012 7.3E-06 31.2 21.9 278 1-340 51-398 (474) 152 protein:vir:106716 Length: 698 92.2 0.012 7.6E-06 31.1 16.4 314 1-340 1-468 (698) 153 protein:vir:80680 Length: 441 92.1 0.013 8E-06 30.9 21.1 290 25-340 1-380 (441) 154 protein:vir:99522 Length: 470 92.0 0.013 8.2E-06 30.9 21.0 283 1-340 59-406 (470) 155 protein:vir:98444 Length: 434 91.5 0.016 9.7E-06 30.5 18.7 288 31-340 1-366 (434) 156 protein:vir:106491 Length: 646 90.9 0.018 1.1E-05 30.1 10.7 331 1-340 1-399 (646) 157 protein:vir:96839 Length: 474 90.6 0.02 1.3E-05 29.9 20.7 271 1-340 59-409 (474) 158 protein:vir:3609 Length: 452 # 90.5 0.021 1.3E-05 29.8 24.0 274 1-340 50-385 (452) 159 protein:vir:4898 Length: 502 # 90.5 0.021 1.3E-05 29.8 21.3 286 1-340 75-427 (502) 160 protein:vir:105292 Length: 478 90.2 0.022 1.4E-05 29.7 21.3 273 1-340 59-411 (478) 161 protein:vir:78589 Length: 695 89.5 0.026 1.6E-05 29.3 17.5 311 1-340 1-468 (695) 162 protein:vir:95113 Length: 474 88.1 0.034 2.1E-05 28.6 22.1 269 1-340 60-405 (474) 163 protein:vir:97336 Length: 492 87.4 0.039 2.4E-05 28.3 19.4 297 1-340 56-422 (492) 164 protein:vir:733 Length: 453 # 87.4 0.039 2.4E-05 28.3 20.7 284 1-340 50-392 (453) 165 protein:vir:96494 Length: 501 86.5 0.045 2.8E-05 28.0 20.9 289 1-340 74-425 (501) 166 protein:vir:96266 Length: 474 86.1 0.048 3E-05 27.8 19.0 272 1-340 60-405 (474) 167 protein:vir:95899 Length: 474 86.1 0.048 3E-05 27.8 19.0 272 1-340 60-405 (474) 168 protein:vir:2427 Length: 485 # 85.5 0.052 3.3E-05 27.6 18.2 314 1-340 25-403 (485) 169 protein:vir:94805 Length: 492 85.4 0.053 3.3E-05 27.6 20.8 287 1-340 77-422 (492) 170 protein:vir:1236 Length: 483 # 85.2 0.055 3.4E-05 27.5 21.6 286 1-340 68-413 (483) 171 protein:vir:9871 Length: 429 # 85.0 0.056 3.5E-05 27.4 22.5 271 1-340 34-369 (429) 172 protein:vir:3964 Length: 453 # 84.5 0.06 3.7E-05 27.3 23.9 279 1-340 50-387 (453) 173 protein:vir:79043 Length: 479 82.5 0.077 4.8E-05 26.7 21.2 309 1-340 32-419 (479) 174 protein:vir:8184 Length: 474 # 80.1 0.098 6.1E-05 26.1 17.5 310 1-340 1-411 (474) 175 protein:vir:102950 Length: 471 78.9 0.11 6.8E-05 25.9 21.6 277 1-340 38-411 (471) 176 protein:vir:103219 Length: 201 78.3 0.064 4E-05 27.1 7.0 124 205-340 1-138 (201) 177 protein:vir:9306 Length: 511 # 77.3 0.13 7.8E-05 25.5 21.5 301 1-340 74-436 (511) 178 protein:vir:106639 Length: 481 76.6 0.13 8.3E-05 25.4 20.3 315 1-340 43-415 (481) 179 protein:vir:107112 Length: 478 76.2 0.14 8.6E-05 25.3 21.0 277 1-340 59-410 (478) 180 protein:vir:2732 Length: 501 # 75.9 0.14 8.8E-05 25.2 20.9 289 1-340 67-426 (501) 181 protein:vir:78805 Length: 511 74.4 0.16 9.8E-05 25.0 21.7 297 1-340 74-436 (511) 182 protein:vir:96366 Length: 511 74.4 0.16 9.8E-05 25.0 21.7 297 1-340 74-436 (511) 183 protein:vir:96179 Length: 468 72.7 0.18 0.00011 24.7 20.9 284 1-340 59-410 (468) 184 protein:vir:106027 Length: 629 71.4 0.2 0.00012 24.5 14.6 334 1-340 1-416 (629) 185 protein:vir:7768 Length: 484 # 71.4 0.2 0.00012 24.5 17.4 303 1-340 1-401 (484) 186 protein:vir:7987 Length: 456 # 71.4 0.2 0.00012 24.5 15.2 299 1-340 17-397 (456) 187 protein:vir:5665 Length: 511 # 70.7 0.21 0.00013 24.4 19.6 320 1-340 16-442 (511) 188 protein:vir:105461 Length: 470 70.7 0.21 0.00013 24.3 23.2 272 1-340 38-408 (470) 189 protein:vir:99916 Length: 504 66.8 0.26 0.00016 23.8 19.9 306 1-340 33-414 (504) 190 protein:vir:95806 Length: 440 63.8 0.31 0.00019 23.4 21.8 289 1-340 27-380 (440) 191 protein:vir:99781 Length: 511 63.8 0.31 0.00019 23.4 21.1 296 1-340 74-436 (511) 192 protein:vir:107517 Length: 639 62.6 0.33 0.00021 23.2 12.1 334 1-340 1-425 (639) 193 protein:vir:97900 Length: 639 62.6 0.33 0.00021 23.2 12.1 334 1-340 1-425 (639) 194 protein:vir:103951 Length: 511 55.3 0.48 0.0003 22.3 22.3 298 1-340 74-425 (511) 195 protein:vir:102602 Length: 456 52.8 0.55 0.00034 22.0 17.3 305 1-340 1-396 (456) 196 protein:vir:105819 Length: 456 52.8 0.55 0.00034 22.0 17.3 305 1-340 1-396 (456) 197 protein:vir:94546 Length: 506 48.2 0.68 0.00042 21.5 18.9 281 1-340 57-436 (506) 198 protein:vir:96240 Length: 511 47.2 0.71 0.00044 21.4 21.9 283 1-340 74-425 (511) 199 protein:vir:79703 Length: 505 44.7 0.8 0.00049 21.1 16.1 286 1-340 57-449 (505) 200 protein:vir:97171 Length: 512 44.4 0.81 0.0005 21.1 23.8 298 1-340 74-437 (512) 201 protein:vir:2500 Length: 501 # 42.7 0.87 0.00054 20.9 15.1 281 1-340 54-420 (501) 202 protein:vir:78537 Length: 480 42.1 0.9 0.00056 20.8 20.3 287 1-340 1-394 (480) 203 protein:vir:104082 Length: 485 41.2 0.94 0.00058 20.7 16.5 293 1-340 40-402 (485) 204 protein:vir:106571 Length: 499 37.0 1.1 0.00071 20.3 23.1 277 1-340 49-411 (499) 205 protein:vir:101189 Length: 516 36.5 1.2 0.00072 20.2 19.6 319 1-340 3-445 (516) 206 protein:vir:101806 Length: 516 36.5 1.2 0.00072 20.2 19.6 319 1-340 3-445 (516) 207 protein:vir:78227 Length: 480 36.5 1.2 0.00073 20.2 21.1 290 1-340 1-394 (480) 208 protein:vir:4782 Length: 522 # 36.1 1.2 0.00074 20.2 15.9 286 1-340 50-454 (522) 209 protein:vir:94709 Length: 522 32.0 1.5 0.0009 19.7 19.3 313 1-340 19-420 (522) 210 protein:vir:102330 Length: 451 31.8 1.5 0.00091 19.7 22.0 279 1-340 28-395 (451) 211 protein:vir:4223 Length: 486 # 29.8 1.6 0.001 19.4 17.8 305 1-340 29-402 (486) 212 protein:vir:101418 Length: 569 27.6 1.8 0.0011 19.1 10.5 329 1-340 53-469 (569) 213 protein:vir:38 Length: 496 # N 27.0 1.9 0.0012 19.1 22.2 296 1-340 55-436 (496) 214 protein:vir:3028 Length: 500 # 26.9 1.9 0.0012 19.1 17.2 285 1-340 50-441 (500) 215 protein:vir:9815 Length: 500 # 26.9 1.9 0.0012 19.1 17.2 285 1-340 50-441 (500) 216 protein:vir:2341 Length: 488 # 26.5 1.9 0.0012 19.0 18.2 297 26-340 1-408 (488) 217 protein:vir:99072 Length: 479 24.2 2.2 0.0014 18.7 16.1 293 22-340 1-390 (479) 218 protein:vir:1587 Length: 508 # 24.0 2.2 0.0014 18.7 20.4 282 1-340 51-446 (508) 219 protein:vir:5961 Length: 503 # 23.7 2.3 0.0014 18.6 23.8 280 1-340 60-423 (503) 220 protein:vir:98265 Length: 524 20.9 2.7 0.0017 18.2 21.6 324 1-340 28-452 (524) No 1 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=5.1e-112 Score=630.71 Aligned_cols=340 Identities=100% Similarity=1.502 Sum_probs=334.3 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) |||||++++++.++.+++.+.+|+||+|+||++++++++|+||+.+|+||+|||++.+|++++++++||++||.+|+|++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k~n~l 80 (340) T protein:vir:98 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) T ss_pred CCCCCCCccccccccCccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhhhhHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEEccccEEEe Q lcl|Aclame:pro 81 ASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTVFHL 160 (340) Q Consensus 81 ~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~~~~dvih~ 160 (340) +.+|+|||++++++|++++.|++++||||++++||..|++++|+|+++.++++..+++.||++..+++.+.|+++||||+ T Consensus 81 ~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~~~~~~~~~~~~~eViHi 160 (340) T protein:vir:98 81 ASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTVFHL 160 (340) T ss_pred hhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCcEEEEEecCCeEEEEccccEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccc Q lcl|Aclame:pro 161 LEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFY 240 (340) Q Consensus 161 r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl 240 (340) |.+++.+++||+|||.++++++.++.++++|+++||+||+||+|||+++++.+++++++++|++|++.+|.+|+++++|+ T Consensus 161 r~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~~vl 240 (340) T protein:vir:98 161 LEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFY 240 (340) T ss_pred cCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCccccCceeEe Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999 Q ss_pred cCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 241 SPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFREV 320 (340) Q Consensus 241 ~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~l 320 (340) .++++++|++|+|++++++|+||+|+++++++|||++|||||+++|+.++++++|+|+|++.+.|+++||.||+++||++ T Consensus 241 ~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~iee~ 320 (340) T protein:vir:98 241 SPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFREV 320 (340) T ss_pred cCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999998888999999999999999999999999999 Q ss_pred HHhhCccceeecccccCCCC Q lcl|Aclame:pro 321 NDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 321 n~~l~~~~~rf~~~~l~~~~ 340 (340) |+||+.+++||++|+|+++| T Consensus 321 n~~L~~e~~rF~~~~l~~~d 340 (340) T protein:vir:98 321 NDWLGMEVIRFKEYTLDNPE 340 (340) T ss_pred HhcccccccccCccccccCC Confidence 99999999999999999999 No 2 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=1.7e-110 Score=622.42 Aligned_cols=340 Identities=77% Similarity=1.273 Sum_probs=327.3 Q ss_pred CCCCCCCcccc---cccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVA---MTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~---~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |||||+++.++ +++++++++++|+||+|+||++++++++|+||+.||+||+|||++.+|++++|+|+||++||.+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~~k~ 80 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCccceehh Confidence 99998765443 444566789999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEEccccE Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTV 157 (340) Q Consensus 78 n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~~~~dv 157 (340) |+++.+|+|||+++++.|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++..+++.+.|+++|| T Consensus 81 n~l~~~~~Pnp~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~g~~~~~~~~dI 160 (344) T protein:vir:56 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hhHHhhcCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCEEEEEecCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 158 FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNL 237 (340) Q Consensus 158 ih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 237 (340) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++++++++|++|++.+|++|++.+ T Consensus 161 iHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e~~~~lk~~~~~~~g~~~~r~l 240 (344) T protein:vir:56 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCCCCccce Confidence 99999999999999999999999999999999999999999999999999999899999999999999998888888888 Q ss_pred ccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF 317 (340) Q Consensus 238 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 317 (340) ++..|+|+++|++++|++++++|+||+|+++++++|||++|||||+++|+.+.++++++|+|++.+.|+++||.||+++| T Consensus 241 ~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~i 320 (344) T protein:vir:56 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 88899999999999999999999999999999999999999999999999998888999999999999999999999999 Q ss_pred HHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 318 REVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 318 e~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |++|+||+.+++||++|+|+..+ T Consensus 321 e~~n~~l~~~~~~F~~y~l~~~~ 343 (344) T protein:vir:56 321 REINGWIGQEVIRFKNYSLDTDN 343 (344) T ss_pred HHHHhhhccccccCCCccccccC Confidence 99999999999999999999999 No 3 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=1.6e-109 Score=617.02 Aligned_cols=340 Identities=77% Similarity=1.271 Sum_probs=328.1 Q ss_pred CCCCCCCcccc---cccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVA---MTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~---~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |||||+++.++ +++++++++.+|+||+|+||++++++++|++|+.+|+||+|||++.+|++++|+++||++||.+|+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhhhh Confidence 99998775443 344667789999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEEccccE Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTV 157 (340) Q Consensus 78 n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~~~~dv 157 (340) |+++.+|+|||++++..|++++.|++++||||++++||..|+|++|+|+|+.+|++..+++.||++..++..+.|+++|| T Consensus 81 n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~v~~~~~~~~~~~~eI 160 (344) T protein:vir:60 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hHHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCeEEEEccCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 158 FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNL 237 (340) Q Consensus 158 ih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 237 (340) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.++++++++++++|++.+|++|++.+ T Consensus 161 iHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~~~ik~~~~~~~g~~~~r~~ 240 (344) T protein:vir:60 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCCcce Confidence 99999999999999999999999999999999999999999999999999999899999999999999999998888899 Q ss_pred ccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF 317 (340) Q Consensus 238 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 317 (340) ++..|+|+.+|++|+|++++++|+||+|+++++++|||++|||||+++|+.+.++++|+|+|++.+.|+++||+||+++| T Consensus 241 ~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl~~~~ 320 (344) T protein:vir:60 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999 Q ss_pred HHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 318 REVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 318 e~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |+||+|||.+++||++|+|+..| T Consensus 321 e~ln~~lg~~~i~F~~~~l~~~d 343 (344) T protein:vir:60 321 REINGWLGQEVIRFKNYSLDTDN 343 (344) T ss_pred HHHHHhcCCcccccCccccCCCC Confidence 99999999999999999999999 No 4 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=2e-109 Score=616.51 Aligned_cols=340 Identities=77% Similarity=1.271 Sum_probs=326.8 Q ss_pred CCCCCCCccc---ccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV---AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~---~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |||||+++++ .+++++++++++|+||+|+||++++++++|+||+.+|+||+|||++.+|++++++|+||++||.+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccceehh Confidence 9999866543 3334556789999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEEccccE Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTV 157 (340) Q Consensus 78 n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~~~~dv 157 (340) |+++.+|+|||++++++|++++.|++++||||++++||..|++++|+|+++.++++..+++.||++..++..+.|+++|| T Consensus 81 n~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~~~~~~~~~~~~~eI 160 (344) T protein:vir:20 81 NILASTFIPHPWLSQQDFSRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTAFAPGSV 160 (344) T ss_pred hhHHHhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCCEEEEEccCCeEEEEcCccE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 158 FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNL 237 (340) Q Consensus 158 ih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 237 (340) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.++++++++++++|++.+|++|++.+ T Consensus 161 iHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e~~~~ik~~~~~~~g~~n~r~l 240 (344) T protein:vir:20 161 FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRENMVKSKGRNNFKNL 240 (344) T ss_pred EEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHHhcCCCCccce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888889 Q ss_pred ccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF 317 (340) Q Consensus 238 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 317 (340) ++..|+|+.+|++|+|++++++|+||+|+++++++|||++|||||+++|+.+.++++++|+|++.+.|+++||.||+++| T Consensus 241 ~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~~ 320 (344) T protein:vir:20 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRI 320 (344) T ss_pred EEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999 Q ss_pred HHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 318 REVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 318 e~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |++|+|||.+++||++|+|+..+ T Consensus 321 e~in~~lg~~~i~F~~~~l~~~d 343 (344) T protein:vir:20 321 REINGWLGQEVIRFKNYSLDTDN 343 (344) T ss_pred HHHHHhcCCcccccCccccccCC Confidence 99999999999999999998888 No 5 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=9.8e-109 Score=612.72 Aligned_cols=340 Identities=56% Similarity=1.025 Sum_probs=326.9 Q ss_pred CCCCCCCcccc--------cccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVA--------MTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~--------~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) |||||+++... .++.+++++.+|+||||+||++++++++|++|+.+|+||+|||++.+|++++++++||++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhhh Confidence 99998764332 2234456789999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEE Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEF 152 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (340) |.+|+|+++.+|+|||+++++.|++++.|++++||||++++||..|++++|+|+++.++++..+.+.||++..+++.+.| T Consensus 81 l~~k~n~l~~~~~Pnp~~t~~~f~~~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~~~g~~~~~ 160 (351) T protein:vir:79 81 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEF 160 (351) T ss_pred hhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCCeEEEEecCceEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 153 APDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLG 232 (340) Q Consensus 153 ~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 232 (340) +++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||+|||+++++.++++++++++++|++++|.+ T Consensus 161 ~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~~~~~~~G~~ 240 (351) T protein:vir:79 161 EPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 240 (351) T ss_pred cCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 233 NFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSP 312 (340) Q Consensus 233 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P 312 (340) |+++++|+.++++++|++|+|++++++|+||+|+++++++|||++|||||.++|+.+.++++|+|+|++.+.|+++||.| T Consensus 241 N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~~~n~e~~~~~f~~~~l~P 320 (351) T protein:vir:79 241 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 320 (351) T ss_pred ccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999 Q ss_pred HHHHHHHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 313 LQDRFREVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 313 ~~~~ie~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |+++||++|+||+.++++|++|+|++.+ T Consensus 321 l~~~ie~ln~~lg~~~~~F~~~~llr~d 348 (351) T protein:vir:79 321 LQARFAELNDWLGDEVVTFDDYEIPPAP 348 (351) T ss_pred HHHHHHHHHhhcCcceeeeChhhhcccc Confidence 9999999999999999999999999999 No 6 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=1.4e-108 Score=611.85 Aligned_cols=340 Identities=56% Similarity=1.030 Sum_probs=327.2 Q ss_pred CCCCCCCccc--------ccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV--------AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~--------~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) |||||++..+ ..++.+++++.+|+||||+||++++++++|++|+.+|+||+|||++.+|++++++|+||++| T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~ 105 (376) T protein:vir:10 26 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 105 (376) T ss_pred chhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhh Confidence 9999877533 22234456889999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEE Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEF 152 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (340) |.+|+|+++.+|+|||++++..|++++.|++++||||++++||..|++++|+|+++.+|++..+.+.||++..+++.+.| T Consensus 106 l~~k~n~l~~~~~Pnp~lT~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~~ 185 (376) T protein:vir:10 106 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFNGFVYVNGWQERHEF 185 (376) T ss_pred HHHHhHHHHhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCCeEEEEEcCCeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 153 APDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLG 232 (340) Q Consensus 153 ~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 232 (340) +++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||++|+|||+++|+.+++|++++++++|++++|.+ T Consensus 186 ~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l~~e~~~~lr~~~~~~~G~~ 265 (376) T protein:vir:10 186 EPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 265 (376) T ss_pred ccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999 Q ss_pred cccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 233 NFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSP 312 (340) Q Consensus 233 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P 312 (340) |+++++|+.++|+++|++|+|++++++|+||+|+++++++|||++|||||.++|+.++++++|+|+|++.+.|+++||.| T Consensus 266 N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~eq~~~~f~~~~L~P 345 (376) T protein:vir:10 266 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 345 (376) T ss_pred ccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999 Q ss_pred HHHHHHHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 313 LQDRFREVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 313 ~~~~ie~ln~~l~~~~~rf~~~~l~~~~ 340 (340) ++++||++|+||+.++++|++|+|++.| T Consensus 346 l~~~ieeln~~L~~~~~~F~~~~Llr~d 373 (376) T protein:vir:10 346 LQARFAELNDWLGEEVVRFDDYEIPPAP 373 (376) T ss_pred HHHHHHHHHhhccccccccChhHhhccc Confidence 9999999999999999999999999999 No 7 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=5.7e-108 Score=608.54 Aligned_cols=340 Identities=57% Similarity=1.032 Sum_probs=326.7 Q ss_pred CCCCCCCcccc--------cccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVA--------MTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~--------~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) |||||+++... .++.+++++.+|+||||+||++++++++|++|+.+|+||+|||++.+|++++++++||++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhhh Confidence 99998764332 2234456789999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEE Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEF 152 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~ 152 (340) |++|+|+++.+|+|||+++++.|++++.|++++||||++++||..|++++|+|+++.+|++..+.+.||++..+++.+.| T Consensus 81 l~~k~n~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~~~~~~~ 160 (351) T protein:vir:78 81 LFFKANVLASTFRPHRWLSRHAFERWALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFSGFVYVNGWQERHEF 160 (351) T ss_pred hhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCcceEEeeeCCeEEEEecCCeEEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999 Q ss_pred ccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 153 APDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLG 232 (340) Q Consensus 153 ~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 232 (340) +++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||+|||+++++.+++|++++++++|++++|++ T Consensus 161 ~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~~~~~~ls~e~~~~lr~~~~~~~G~~ 240 (351) T protein:vir:78 161 APDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQKQDDVDNMRDALKNAKGPG 240 (351) T ss_pred ccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcc Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999 Q ss_pred cccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 233 NFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSP 312 (340) Q Consensus 233 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P 312 (340) |+++++|+.++++++|++++|++++++|+||+|+++++++|||++|||||.++|+.++++++|+|+|++.+.|++++|.| T Consensus 241 N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~l~P 320 (351) T protein:vir:78 241 NFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTPDTAARVFGRNEIRP 320 (351) T ss_pred cccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999 Q ss_pred HHHHHHHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 313 LQDRFREVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 313 ~~~~ie~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |+++||++|+||+.++++|++|+|++.| T Consensus 321 ~~~~iee~n~~l~~~~~~F~~~~Llr~d 348 (351) T protein:vir:78 321 LQARFAELNDWLGDEVVRFDDYEIPPAP 348 (351) T ss_pred HHHHHHHHHhhcCccceecChhhhcccc Confidence 9999999999999999999999999999 No 8 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=1.7e-107 Score=606.00 Aligned_cols=339 Identities=51% Similarity=0.875 Sum_probs=324.9 Q ss_pred CCCCCCCccc-----------ccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh Q lcl|Aclame:pro 1 MSKRKPRKAV-----------AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH 69 (340) Q Consensus 1 m~~~~~~~~~-----------~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~ 69 (340) |||||++..+ ..++.+.+.+.+|+||||+||++++++++|++|+.+|+||+|||++.+|++++|+++|| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~~~h 80 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSSVYL 80 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhhhhh Confidence 9999865322 12223345789999999999999999999999999999999999999999999999999 Q ss_pred hhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceE Q lcl|Aclame:pro 70 SSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQP 149 (340) Q Consensus 70 ~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~ 149 (340) ++||.+|+|+++.+|+|||++++..|++++.|++++||||++++||..|++++|+|+++.++++..+++.||++..++.. T Consensus 81 ~~~l~~k~n~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~~~~~~~~ 160 (350) T protein:vir:11 81 QSGLKFKRNMLAKTFIPHRLLSRATFEQFSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLETFYQVRSWKDE 160 (350) T ss_pred ccchhhhhhhhhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCCeEEEEeeCCeE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhc Q lcl|Aclame:pro 150 HEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSK 229 (340) Q Consensus 150 ~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~ 229 (340) +.|+++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++++.|++.+ T Consensus 161 ~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~~~~l~~~~~~~~ 240 (350) T protein:vir:11 161 HEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEEDIDALRTALKTAK 240 (350) T ss_pred EEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhc Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999 Q ss_pred CcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 230 GLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNE 309 (340) Q Consensus 230 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~ 309 (340) |++|+|+++|+.++|+++|++++|++++++|+||+|+++++++|||++|||||+++|+.+.++++|+|+|++.+.|+++| T Consensus 241 G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~~f~~~~ 320 (350) T protein:vir:11 241 GPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGSISDAAAVWASLE 320 (350) T ss_pred CccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCCHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999 Q ss_pred HHHHHHHHHHHHHhhCccceeecccccCCC Q lcl|Aclame:pro 310 LSPLQDRFREVNDWLGMEVIRFKEYTLDNP 339 (340) Q Consensus 310 l~P~~~~ie~ln~~l~~~~~rf~~~~l~~~ 339 (340) |.||+++||++|+||+++++||++|++... T Consensus 321 L~P~~~~ie~ln~~l~~~~~~F~~~~~~~l 350 (350) T protein:vir:11 321 LAPMQTRLQQVNEMIGEEVVRFAQFDAPGL 350 (350) T ss_pred HHHHHHHHHHHHhhcCccccccCcccccCC Confidence 999999999999999999999999999999 No 9 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=7.3e-105 Score=591.51 Aligned_cols=340 Identities=59% Similarity=1.066 Sum_probs=326.3 Q ss_pred CCCCCCCcccc----------------cccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVA----------------MTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLR 64 (340) Q Consensus 1 m~~~~~~~~~~----------------~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r 64 (340) |||||++..+. .++++++++++|+||+|+||++++++++|++|+.+|+||+|||++.+|+++++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~ 80 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFR 80 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHh Confidence 99998775432 12345678999999999999999999999999999999999999999999999 Q ss_pred cchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEe Q lcl|Aclame:pro 65 SAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVE 144 (340) Q Consensus 65 ~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~ 144 (340) ++++|++++..|+|++..+++|||+++++.|++++.|++++||||++++||..|++++|+|+++.+|++..+++.||++. T Consensus 81 ~~~~h~~~~~~~~n~l~l~~~Pn~~~t~~~f~~l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~~ 160 (368) T protein:vir:79 81 AAAHHSSAVYVKRNILVSTFIPHPLLSRATFERLVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDLNTYFFVQ 160 (368) T ss_pred hccccchhhhhhcchhhhhcCCCcCCCHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccCCEEEEEe Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999 Q ss_pred CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDA 224 (340) Q Consensus 145 ~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~ 224 (340) .+++.++|+++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||++|+|||+++++.+++|++++++++ T Consensus 161 ~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l~~e~~~~lk~~ 240 (368) T protein:vir:79 161 NWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQKQEDVDTLREA 240 (368) T ss_pred cCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999999999 Q ss_pred HHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH Q lcl|Aclame:pro 225 MRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV 304 (340) Q Consensus 225 ~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~ 304 (340) |++++|.+|+|+++|+.++|+++|++|+|++++++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+. T Consensus 241 ~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~e~~~~~ 320 (368) T protein:vir:79 241 MKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTGGFGDVEKAAMV 320 (368) T ss_pred HHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999998888889999999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFREVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |+++||.||+++||++|+||+.+++||++|.|+..| T Consensus 321 f~~~~l~Pl~~~ie~ln~~l~~e~~rF~~~~l~~~D 356 (368) T protein:vir:79 321 FARNEVKPLQDRLLAINDWIGDEVVRFAPYALGGHD 356 (368) T ss_pred HHHHHHHHHHHHHHHHHhccCcceeeechhHhhccc Confidence 999999999999999999999999999999999998 No 10 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=2.6e-103 Score=583.02 Aligned_cols=340 Identities=53% Similarity=0.929 Sum_probs=321.1 Q ss_pred CCCCCCCccc-ccccCCccceEEEECCCceeecCcchhhheeeee-ecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV-AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECI-SNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~-~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~-~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) ||||+++.+. ..++.+++.+++|+||||||||+++++++|+||+ .+|+||+||+++.+|++++++++||++||..|+| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~~~~~h~~~i~~k~n 80 (346) T protein:vir:10 1 MKKQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDGLAKSLRSSTHHESAIITKAN 80 (346) T ss_pred CCcccCCCCCcccccccccCeEEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHHHHHHHHhhhhcchhhhhhhh Confidence 9999766544 3444667889999999999999999999999997 5789999999999999999999999999999999 Q ss_pred hHHHhh-hccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEE--eCCceEEEEccc Q lcl|Aclame:pro 79 VLASTY-IPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFV--ENFTQPHEFAPD 155 (340) Q Consensus 79 ~~~~~~-~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~--~~~~~~~~~~~~ 155 (340) ++...+ .|||+++++.|++++.|++++||||++++||..|++++|+|+++.+|++..+.+.++++ ..+++.++|+++ T Consensus 81 ~l~~l~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~ 160 (346) T protein:vir:10 81 ILLSTCEVDSRYLSRRDLSSFVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG 160 (346) T ss_pred hHHHHHhCCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeEEEEEEccCCeEEEEecc Confidence 999887 69999999999999999999999999999999999999999999999998777654333 356788999999 Q ss_pred cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccccc Q lcl|Aclame:pro 156 TVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFK 235 (340) Q Consensus 156 dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~ 235 (340) ||||+|.+++.+++||+||+.++++++.++.++++|+++||+||++|++||+++++.++++++++++++|++.+|++|++ T Consensus 161 dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~~~~i~~~~~~~~g~~n~~ 240 (346) T protein:vir:10 161 SIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQEDVENIRQQLKQSKGVGNFK 240 (346) T ss_pred cEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHHHHHhcCccccC Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999 Q ss_pred ccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQD 315 (340) Q Consensus 236 ~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~ 315 (340) +++|++++++++|++++|++++++|+||+|++++++++||++|||||.++|+.++++++++|+|++.+.|++++|+|+++ T Consensus 241 ~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~~ 320 (346) T protein:vir:10 241 NLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEVFFITEIEPLQE 320 (346) T ss_pred ceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999 Q ss_pred HHHHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 316 RFREVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 316 ~ie~ln~~l~~~~~rf~~~~l~~~~ 340 (340) +||++|+||+.++|||++|+|++.+ T Consensus 321 ~iee~n~~L~~e~i~F~~~~ll~~~ 345 (346) T protein:vir:10 321 RLKEFNQWLGQEVIKFKPSKLLQRT 345 (346) T ss_pred HHHHHHhhcccceeeechhhhcccC Confidence 9999999999999999999999999 No 11 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=1e-101 Score=574.31 Aligned_cols=336 Identities=31% Similarity=0.527 Sum_probs=310.6 Q ss_pred CCCCCCCcccccccCCccceEEEECC-CceeecCcchhhheeeeeecC--chhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFG-EPVPVLDKRDILDYVECISNG--KWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~-~p~~~~~~~~~~~~~~~~~~~--~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |+++.+..++ +.+++++++|+|| ||+|||+++++++|++|+.|+ +||+|||++.+|+++.|+|+||++||.+|+ T Consensus 1 ~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~~h~~~i~~k~ 77 (348) T protein:vir:26 1 MTEQLIHSHT---TDGTESKSVYSFDPNPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANGYHGSLLKARA 77 (348) T ss_pred CCccccchhh---ccccCCceEEEecCCCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhhhhhhhHhhhh Confidence 9988765444 3344567899999 899999999999999999865 899999999999999999999999999999 Q ss_pred hhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEEccccE Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTV 157 (340) Q Consensus 78 n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~~~~dv 157 (340) |+++.+|+|||++++..|++++.|++++||||++++||..|+|++|+|+++.+|++..+++ ||++..+++.+.|+++|| T Consensus 78 N~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~~-~~~~~~~g~~~~f~~~dI 156 (348) T protein:vir:26 78 NYVAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNGD-FVQLLRNNEQKVFKAKDV 156 (348) T ss_pred hHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecCc-EEEEEecCeEEEEcCccE Confidence 9999999999999999999999999999999999999999999999999999999987765 566777888899999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 158 FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNL 237 (340) Q Consensus 158 ih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 237 (340) ||+|.+++.+++||+|||.++++++.++.++++|+++||+||+||++||+++++.+++|+++++|++|++.+|++|++++ T Consensus 157 iHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~~lk~~~~~~~G~~n~~~~ 236 (348) T protein:vir:26 157 IFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEKALKEKIASSKGIGNFRSM 236 (348) T ss_pred EEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHHHHhcCcccccce Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF 317 (340) Q Consensus 238 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i 317 (340) +|+.++++++|++++|++++++|+||+|+++++++|||++|||||+++|+.+.++++|+|+|++.+.|+++||.||+++| T Consensus 237 ~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~i 316 (348) T protein:vir:26 237 FVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRF 316 (348) T ss_pred eEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999998889999999999999999999999999 Q ss_pred HH-HHHhhC-ccceeec---ccccCCCC Q lcl|Aclame:pro 318 RE-VNDWLG-MEVIRFK---EYTLDNPE 340 (340) Q Consensus 318 e~-ln~~l~-~~~~rf~---~~~l~~~~ 340 (340) |+ ||+||+ ++.++|+ ++.++.++ T Consensus 317 e~~ln~~l~~~~~~~~~fdl~~~~e~~~ 344 (348) T protein:vir:26 317 MDAVNNDPEIPDNLKLKFNLNPGVESAN 344 (348) T ss_pred HHHHhhhhCCCCccEEEEecCcccccch Confidence 87 999996 3343443 23344444 No 12 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=7.5e-100 Score=564.02 Aligned_cols=334 Identities=32% Similarity=0.527 Sum_probs=316.8 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeee--ecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECI--SNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~--~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) |+|+++++....++.++.++.+|+||||+++ ++++|++|+ ++|+||+|||++.+|+++.|+|+||++||.+|+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~k~n 76 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLNEISAS----PALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRAN 76 (345) T ss_pred CCCCccccchhhcccCcceeEEeecCCcccc----cchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceeeech Confidence 9999998887777777888999999999998 689999998 5889999999999999999999999999999999 Q ss_pred hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEe-----CCceEEEEc Q lcl|Aclame:pro 79 VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVE-----NFTQPHEFA 153 (340) Q Consensus 79 ~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~-----~~~~~~~~~ 153 (340) +++.+|+|||+++++.|++++.|++++||||++++||..|++++|+|+++.+|++..+++.+|.+. .++..++|+ T Consensus 77 ~l~~~~~Pn~~lt~~~f~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~ 156 (345) T protein:vir:37 77 MVSSLYEGGKALSRMDMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMKKSLYDTAQEIYRYD 156 (345) T ss_pred HHHhhccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeEEEEEeEecCCceEEEEc Confidence 999999999999999999999999999999999999999999999999999999999998876654 357788999 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 154 PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGN 233 (340) Q Consensus 154 ~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n 233 (340) ++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||++|+|||+++++.+++|+++++|++|++++|++| T Consensus 157 ~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~~~~~~g~~n 236 (345) T protein:vir:37 157 AKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKGVGN 236 (345) T ss_pred cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHHHHHHHhcCccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 FKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPL 313 (340) Q Consensus 234 ~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~ 313 (340) +++++|+.|+|+++|++++|++++++|+||+|++++++++||++|||||+++|+.+.++++++|+|++.+.|+++||.|+ T Consensus 237 ~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~ 316 (345) T protein:vir:37 237 FRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPL 316 (345) T ss_pred ccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999 Q ss_pred HHHHHHHHHhh----CccceeecccccCC Q lcl|Aclame:pro 314 QDRFREVNDWL----GMEVIRFKEYTLDN 338 (340) Q Consensus 314 ~~~ie~ln~~l----~~~~~rf~~~~l~~ 338 (340) +++||+.++++ +.++++|++|+|.+ T Consensus 317 ~~~ie~~ln~~~~~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 317 QEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHhhhhccCCCcceEEecchhhcC Confidence 99999855555 45679999999999 No 13 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=2.4e-99 Score=561.29 Aligned_cols=332 Identities=36% Similarity=0.628 Sum_probs=309.5 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeec--CchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISN--GKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~--~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) |||||++++..+ +.+++++|+||+|+||++++++++|++|+.+ |+||+|||++.+|++++|+++||++||.+|+| T Consensus 1 m~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~~~~~h~~~L~~k~N 77 (337) T protein:vir:78 1 MTKRQQQPAQAA---ASSPRPSVVFSMPEAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVARANAHHGAILMARRN 77 (337) T ss_pred CCCcccCccccc---ccCceeEEEecCcccccCcchhHhhhhhhhccCcceecCCCCHHHHHHHhhcchhhhhHHHhhhc Confidence 999998876544 3446789999999999999999999999987 89999999999999999999999999999999 Q ss_pred hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceEEEEccccEE Q lcl|Aclame:pro 79 VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPDTVF 158 (340) Q Consensus 79 ~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~~~~~~~dvi 158 (340) ..+.+|.|+ +++|++++.|++++||||++++||..|+|++|+|+++.+|++..+++.+| +..+++.+.|+++||| T Consensus 78 ~~~~~f~~~----~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~~~~~-~~~~~~~~~~~~~eIi 152 (337) T protein:vir:78 78 MVAGRFTNQ----RATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDGCFVY-LQQGKPNLIYRPDDVI 152 (337) T ss_pred cccccCcCc----HHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCCeEEE-EEcCCceEEECCccEE Confidence 998888764 68899999999999999999999999999999999999999998776655 4556778899999999 Q ss_pred EecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccc Q lcl|Aclame:pro 159 HLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLF 238 (340) Q Consensus 159 h~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~ 238 (340) |+|.+++.+++||+||+.++++++.++.++++|+++||+||++|+|||+++++.+++++++++|++|++++|++|+++++ T Consensus 153 Hik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~~~~~~G~~n~~~~~ 232 (337) T protein:vir:78 153 WLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEMIANSKGVGNFRSMF 232 (337) T ss_pred EECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHHHHHhcCcccccceE Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999 Q ss_pred cccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccc-ccccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 239 FYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPEN-IGSLGDVEKVAKVFVRNELSPLQDRF 317 (340) Q Consensus 239 vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~-~~~~~n~e~~~~~f~~~~l~P~~~~i 317 (340) |+.++|+++|++++|++++++|+||+|+++++++|||++|||||+++|+.+++ +++|+|+|++.+.|+++||.||+++| T Consensus 233 v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~i 312 (337) T protein:vir:78 233 VNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCELV 312 (337) T ss_pred EEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999998875 57899999999999999999999999 Q ss_pred HHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 318 REVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 318 e~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |+.+++++.+..+|.+|++.-.+ T Consensus 313 e~~~n~~ll~~~~~~~f~~~~~~ 335 (337) T protein:vir:78 313 QDAINSAGLPRALWVTFRETIGA 335 (337) T ss_pred HHHHhhhcCChhhceeccccccc Confidence 99777776777788888888888 No 14 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=1.7e-98 Score=556.66 Aligned_cols=334 Identities=31% Similarity=0.523 Sum_probs=316.3 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeee--ecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECI--SNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~--~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) |+|+|+++++..++..+.+..+|+|++|+++ ++++|++|+ .+++||+|||++.+|++++|+|+||++||.+|+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~k~n 76 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPINDRTFSLSEITAS----PALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRAN 76 (345) T ss_pred CCccccccchhhhcCCCceEEEeecCCcccc----hhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhhhhh Confidence 9999999988888888888999999999974 899999998 4788999999999999999999999999999999 Q ss_pred hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeC-----CceEEEEc Q lcl|Aclame:pro 79 VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVEN-----FTQPHEFA 153 (340) Q Consensus 79 ~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~-----~~~~~~~~ 153 (340) +++.+|+|||+++++.|++++.|++++||||++++||..|++++|+|+++.++++..+++.+|++.. .++.++|+ T Consensus 77 ~l~~~~~Pn~~~t~~~f~~~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~ 156 (345) T protein:vir:37 77 MVSATYEGGKALSKMEMRALCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDGGYSYLMKKSLYDTAQEIYRYD 156 (345) T ss_pred HHhhccCCCCCCCHHHHHHHHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecCCeeEEEeeeeeccCceEEEEc Confidence 9999999999999999999999999999999999999999999999999999999999988766543 47788999 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 154 PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGN 233 (340) Q Consensus 154 ~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n 233 (340) ++||||+|.+++.+++||+|||.++++++.++.++++|+++||+||++|++||+++++.++++++++++++|++.+|++| T Consensus 157 ~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~~e~~~~lk~~~~~~~g~~n 236 (345) T protein:vir:37 157 AKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARKISESKGVGN 236 (345) T ss_pred cccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHhcCccc Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999 Q ss_pred ccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 FKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPL 313 (340) Q Consensus 234 ~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~ 313 (340) +++++++.++|+++|++++|++++++|+||+|+++++++|||++|||||.++|+.++++++++|+|++.+.|+++||.|| T Consensus 237 ~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~~~f~~~~l~P~ 316 (345) T protein:vir:37 237 FRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREVYHYDEVMPL 316 (345) T ss_pred cCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcccHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999 Q ss_pred HHHHHHHHHhh----CccceeecccccCC Q lcl|Aclame:pro 314 QDRFREVNDWL----GMEVIRFKEYTLDN 338 (340) Q Consensus 314 ~~~ie~ln~~l----~~~~~rf~~~~l~~ 338 (340) +++||+.++++ +..+++|++|+|.+ T Consensus 317 ~~~ie~~ln~~~e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 317 QEIIAETINQDPEIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHhhhhhccCCcceEEECchhhcC Confidence 99999854444 45689999999999 No 15 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=1.2e-68 Score=392.88 Aligned_cols=319 Identities=19% Similarity=0.205 Sum_probs=259.3 Q ss_pred EEECCCceeecCcch-hh-----heeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhHHHh------------ Q lcl|Aclame:pro 22 AFTFGEPVPVLDKRD-IL-----DYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLAST------------ 83 (340) Q Consensus 22 ~~~f~~p~~~~~~~~-~~-----~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~~~------------ 83 (340) .|+|....+.+.+.. +. .-+.....++||+||+++.+|+++++.+++|.+||..+++..+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~~~~~~ 80 (540) T protein:vir:41 1 MFNYHLSIKSLEKYRAIKGDTDSQALKEDRFEEYVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGDDGGVE 80 (540) T ss_pred CCCcccChhhccchhhhhccccccccccCCCCccccCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecCccchh Confidence 344444333333321 11 112222335799999999999999999999999999998887653 Q ss_pred -hhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCC--------------- Q lcl|Aclame:pro 84 -YIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENF--------------- 146 (340) Q Consensus 84 -~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~--------------- 146 (340) +.||+++++ +|++.++.+++++||||++++|+..|++++|+|++|.+|++..++..|+++.++ T Consensus 81 ~~lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 160 (540) T protein:vir:41 81 ELLRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEV 160 (540) T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeeccccccee Confidence 469999886 566778889999999999999999999999999999999998887766654432 Q ss_pred -----ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHH----- Q lcl|Aclame:pro 147 -----TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSAT----- 216 (340) Q Consensus 147 -----~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e----- 216 (340) .....++++||||+|.+++.+++||+||+.+++.++.++.++++|+.++|+||++|+|||++++...+++ T Consensus 161 ~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~ 240 (540) T protein:vir:41 161 NPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSD 240 (540) T ss_pred eccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchH Confidence 1234688999999999999999999999999999999999999999999999999999999886543332 Q ss_pred ----HHHHHHHHHHHh-cC-ccccccccccc-CCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccc Q lcl|Aclame:pro 217 ----DVESLRDAMRNS-KG-LGNFKNLFFYS-PNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKP 289 (340) Q Consensus 217 ----~~~~l~~~~~~~-~g-~~n~~~~~vl~-~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~ 289 (340) .++++++.|++. +| .+|+|+++|++ +++..+|++|+|++++++|+||+|++++++++||++|||||++||+.+ T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~ 320 (540) T protein:vir:41 241 GEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITD 320 (540) T ss_pred HHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCccc Confidence 235566666553 44 36899999885 555678999999999999999999999999999999999999999988 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 290 ENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 290 ~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) .++.+++|+|++...|+++||.|++++||+ ||++|..+. ++|+.-++++.| T Consensus 321 ~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~i~f~~~~ll~~D 377 (540) T protein:vir:41 321 VGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKLDPGARFVFNEEILMESE 377 (540) T ss_pred CCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCceEEEecchhhcchH Confidence 777889999999999999999999999986 999885442 556655566556 No 16 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=2.4e-67 Score=385.82 Aligned_cols=326 Identities=17% Similarity=0.197 Sum_probs=267.0 Q ss_pred CCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhHHH------------ Q lcl|Aclame:pro 15 SAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLAS------------ 82 (340) Q Consensus 15 ~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~~------------ 82 (340) -=...+++.++.+|.++.....-...+.....++|++||+++.+|+++++.++.|.+||..+++..+. T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~~~~~~ 80 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFEEYVEPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEGDDEGV 80 (542) T ss_pred CccccccccccccchhhhhccccccccccccCCccccCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeecccchh Confidence 00111123345566555543322233334445689999999999999999999999999998877654 Q ss_pred --hhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCc------------ Q lcl|Aclame:pro 83 --TYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFT------------ 147 (340) Q Consensus 83 --~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~------------ 147 (340) .+.|||.+++. |++.++.+++++||||++++|+..|++++|+|+++.+|++..+++.++.+..+. T Consensus 81 l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~~y~~~~ 160 (542) T protein:vir:41 81 VDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQTWDGVNITHFKDYRYEG 160 (542) T ss_pred hhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEeeecCCcceeEEeecccc Confidence 36799999874 567888899999999999999999999999999999999988777655443221 Q ss_pred --------eEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC--------- Q lcl|Aclame:pro 148 --------QPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD--------- 210 (340) Q Consensus 148 --------~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~--------- 210 (340) ....++++||||+|.+++.+++||+||+.+++.++.++.++++|++++|+||++|+|||++++ T Consensus 161 ~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~ 240 (542) T protein:vir:41 161 EINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDELEED 240 (542) T ss_pred cccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCccccccccc Confidence 123467889999999998999999999999999999999999999999999999999999874 Q ss_pred CCcCHHHHHHHHHHHHHh-cCc-cccccccccc-CCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccc Q lcl|Aclame:pro 211 PAQSATDVESLRDAMRNS-KGL-GNFKNLFFYS-PNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGG 287 (340) Q Consensus 211 ~~~~~e~~~~l~~~~~~~-~g~-~n~~~~~vl~-~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~ 287 (340) ..+++++.+++++.|++. .|. +|+|+++|++ +++..+|++|+|++++++|+||+|.+++++++||++|||||++||+ T Consensus 241 ~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~ 320 (542) T protein:vir:41 241 PDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGI 320 (542) T ss_pred cccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCc Confidence 356889999999999764 454 7889998885 5666789999999999999999999999999999999999999999 Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 288 KPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 288 ~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) .+.++.+++|+|++...|+++||.|+++.||+ ||++|..+. ++|+.-++++.| T Consensus 321 ~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~~~f~~~~ll~~d 379 (542) T protein:vir:41 321 ADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFNPKTRFKFNDETLLESD 379 (542) T ss_pred CCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEecchhhcchH Confidence 88777778999999999999999999999986 999986542 455555555555 No 17 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=2e-62 Score=358.86 Aligned_cols=325 Identities=16% Similarity=0.194 Sum_probs=241.3 Q ss_pred CCCCC---------------------CCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH- Q lcl|Aclame:pro 1 MSKRK---------------------PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG- 58 (340) Q Consensus 1 m~~~~---------------------~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~- 58 (340) |-..| .+...+...+....+++..+....+|.... ++. ...+..||++.+ T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----al~----~~~v~~cv~~Ia~ 72 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDSSINDER----ILQ----ISTVWRCVSLIST 72 (424) T ss_pred CCCCcceEeecCCCchHHHHHhhhcccccccccccccccccccccccccccccHHH----hhc----cHHHHHHHHHHHH Confidence 21111 111111222222222222222122221110 011 011223333321 Q ss_pred -hhhh----hhcchhhhhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCc Q lcl|Aclame:pro 59 -LAKS----LRSAVHHSSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAK 129 (340) Q Consensus 59 -l~~~----~r~~~~~~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~ 129 (340) ++++ ++.... +.......++.+ ....|||+++. +||+.++.+++++||||+++.|+..|++++|+|++|. T Consensus 73 ~iA~lp~~~~~~~~~-~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~ 151 (424) T protein:vir:18 73 LTACLPLDVFETDQN-DNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSA 151 (424) T ss_pred hhccCceEEEEeecC-CceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCc Confidence 1111 111110 000011112222 23479999886 5567788899999999999999999999999999999 Q ss_pred ceeecccCc-eEEEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEe Q lcl|Aclame:pro 130 YTRRGVDDS-VFWFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYV 208 (340) Q Consensus 130 ~~~~~~~~~-~~y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~ 208 (340) .|.+..+++ .+|.+..+++...|+++||||+|.++ .++++|+||+..++.++.++.++++|..++|+||++|++||++ T Consensus 152 ~V~v~~~~~~~~y~~~~~g~~~~~~~~eIih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~ 230 (424) T protein:vir:18 152 NMDVKLVGKKVVYRYQRDSEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILST 230 (424) T ss_pred ceEEEEcCCeEEEEEEeCCeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEe Confidence 998876654 56788888888999999999999886 5789999999999999999999999999999999999999999 Q ss_pred CCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 209 TDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGK 288 (340) Q Consensus 209 ~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~ 288 (340) ++..+++++++++++.|++..|+.|+++++|++ .|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 231 ~~~~l~~e~~~~~~~~~~~~~~g~nag~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~ 305 (424) T protein:vir:18 231 GEKVLTEQQRSQVEENFKEIAGGPVKKRLWILE-----AGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDV 305 (424) T ss_pred CCcCCCHHHHHHHHHHHHHHhCCcccCCceecc-----CCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC Confidence 887899999999999999988889999999985 578899999999999999999999999999999999999998 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 289 PENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 289 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +.++.+++|+|++...|+++||.||+++||+ ||++|... .++|+.-.|++.| T Consensus 306 ~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d 364 (424) T protein:vir:18 306 EKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGD 364 (424) T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccC Confidence 8766677999999999999999999999986 99999544 2667666666666 No 18 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=7.1e-62 Score=355.83 Aligned_cols=325 Identities=16% Similarity=0.203 Sum_probs=241.2 Q ss_pred CCCCC---------------------CCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH- Q lcl|Aclame:pro 1 MSKRK---------------------PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG- 58 (340) Q Consensus 1 m~~~~---------------------~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~- 58 (340) |-..+ ++.......+....+.+.+|....+|.... ++.. ..+..||++.+ T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----al~~----~~v~~cv~~Ia~ 72 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGYLGDSSINDER----ILQI----STVWRCVSLIST 72 (424) T ss_pred CCCCccccccCCCCchHHHHHhhccccccccccchhhccccccccccccccccHHH----hhcc----HHHHHHHHHHHH Confidence 11111 111111111111222222332222222110 1110 11223443321 Q ss_pred -hhhh----hhcchhhhhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCc Q lcl|Aclame:pro 59 -LAKS----LRSAVHHSSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAK 129 (340) Q Consensus 59 -l~~~----~r~~~~~~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~ 129 (340) ++.+ ++.... +.......++.+ ....|||+++. +||+.++.+++++||||++++|+..|++++|+|++|. T Consensus 73 ~iA~lp~~vy~~~~~-~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~ 151 (424) T protein:vir:18 73 LTACLPLDVFETDQN-DNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSA 151 (424) T ss_pred hhccCceEEEEeccC-CceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCc Confidence 1111 111100 000111122222 33479999886 5567788899999999999999999999999999999 Q ss_pred ceeecccCc-eEEEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEe Q lcl|Aclame:pro 130 YTRRGVDDS-VFWFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYV 208 (340) Q Consensus 130 ~~~~~~~~~-~~y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~ 208 (340) +|.+..+++ .+|.+..+++...|+++||||+|.++ .++++|+||+..++.++.++.++++|..++|+||++|+|||++ T Consensus 152 ~v~v~~~~~~~~y~~~~~g~~~~~~~~eVihir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~ 230 (424) T protein:vir:18 152 NMDVKLVGKKVVYRYQRDSEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILST 230 (424) T ss_pred ceEEEEcCCeEEEEEEeCCeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEe Confidence 998876654 56788888888999999999999886 5789999999999999999999999999999999999999999 Q ss_pred CCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 209 TDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGK 288 (340) Q Consensus 209 ~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~ 288 (340) ++..+++++++++++.|++..|+.|+++++|++ +|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 231 ~~~~l~~e~~~~~~~~~~~~~~~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 305 (424) T protein:vir:18 231 GEKVLTEQQRSQVEENFKEIAGGPVKKRLWILE-----AGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDV 305 (424) T ss_pred CCcCCCHHHHHHHHHHHHHHhCCcccCCceecc-----CCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCC Confidence 887789999999999999988889999999985 578899999999999999999999999999999999999998 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 289 PENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 289 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +.++.+++|+|++...|+++||.||+++||+ ||++|..+ .++|+--.|++.| T Consensus 306 ~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d 364 (424) T protein:vir:18 306 EKSTSWGSGIEQQNLGFLQYTLQPYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGD 364 (424) T ss_pred CCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCeEEEEechhhhccC Confidence 8777777999999999999999999999986 99998543 2566655666666 No 19 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=3.6e-61 Score=351.96 Aligned_cols=327 Identities=13% Similarity=0.140 Sum_probs=234.5 Q ss_pred CCCC--------------------------------CCCcccccccCCccceEEEECCCce-eecCcchhhheeeeeecC Q lcl|Aclame:pro 1 MSKR--------------------------------KPRKAVAMTASAPQKMEAFTFGEPV-PVLDKRDILDYVECISNG 47 (340) Q Consensus 1 m~~~--------------------------------~~~~~~~~~~~~~~~~~~~~f~~p~-~~~~~~~~~~~~~~~~~~ 47 (340) |.|+ +..+..-.++.... -.|+ ..|. +++.. -+-...- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~a~--~~~~~~~~~~------~~~~~~r 71 (551) T protein:vir:80 1 MKNKLGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNK-EVAY--SQPVIGSMSA------NPGFKTK 71 (551) T ss_pred CchhhhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccC-ccee--ecccccceec------CcccccC Confidence 1111 00000000000000 0011 0111 00000 0000111 Q ss_pred chhhcccchHHhhhhhhcchhhhhhhhhhhhhHHH---------------------------------------hhhccC Q lcl|Aclame:pro 48 KWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLAS---------------------------------------TYIPHP 88 (340) Q Consensus 48 ~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~~---------------------------------------~~~pnp 88 (340) ..+.||.++.++.+.+..++.+++||..+++..+. ...||+ T Consensus 72 ~~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~ 151 (551) T protein:vir:80 72 PSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGV 151 (551) T ss_pred ccccChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHHHhcCC Confidence 22445555556666666677777777666554331 124665 Q ss_pred C------CcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc--------eEEEEeCCceEEEEcc Q lcl|Aclame:pro 89 L------LSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--------VFWFVENFTQPHEFAP 154 (340) Q Consensus 89 ~------~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~--------~~y~~~~~~~~~~~~~ 154 (340) + +..+|+++++.+++++||+|++++|+..|+|++|+||+|.+|++..+.+ +|+++..++....|++ T Consensus 152 ~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~ 231 (551) T protein:vir:80 152 DNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNA 231 (551) T ss_pred CCCCccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEcc Confidence 5 3346888999999999999999999999999999999999998764432 3455566667788999 Q ss_pred ccEEEecCC---CCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC-CCcCHHHHHHHHHHHHHh-c Q lcl|Aclame:pro 155 DTVFHLLEP---DINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD-PAQSATDVESLRDAMRNS-K 229 (340) Q Consensus 155 ~dvih~r~~---~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~-~~~~~e~~~~l~~~~~~~-~ 229 (340) +||||++.+ ++.+++||+||+.+++.+|.++.++++|+.+||+||++|+|||.+++ ..+++++.+++++.|++. . T Consensus 232 ~eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~ 311 (551) T protein:vir:80 232 REMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLS 311 (551) T ss_pred cceEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhc Confidence 999999854 34457899999999999999999999999999999999999999874 458999999999999874 6 Q ss_pred CcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccc--------ccccccHHHH Q lcl|Aclame:pro 230 GLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPEN--------IGSLGDVEKV 301 (340) Q Consensus 230 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~--------~~~~~n~e~~ 301 (340) |.+|+|+++|+.+ +|++|+|++++++|+||+|++++++++||++|||||++||+.... +.+++|+|++ T Consensus 312 G~~nag~~~vl~~----~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~ 387 (551) T protein:vir:80 312 GINGSWQIPVVSA----EDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEK 387 (551) T ss_pred CccccCccccccC----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHH Confidence 7789999877643 578999999999999999999999999999999999999986543 2378999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 302 AKVFVRNELSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 302 ~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) ...|+++||+||+.+||+ ||++|..+.-..-.|+++..+ T Consensus 388 ~~~f~~~tL~P~~~~ie~~ln~~L~~~~~~~~~f~f~~~~ 427 (551) T protein:vir:80 388 NQASKNKGLQPLLGFIEDFINKHIVAEFGDKYTFQFVGGD 427 (551) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccCCceEEEeeccC Confidence 999999999999999986 999986542111122233333 No 20 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=6.6e-61 Score=350.50 Aligned_cols=320 Identities=13% Similarity=0.142 Sum_probs=230.6 Q ss_pred CCCCCCC---cccccccCC--ccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPR---KAVAMTASA--PQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYV 75 (340) Q Consensus 1 m~~~~~~---~~~~~~~~~--~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~ 75 (340) |.++... +++..+..+ ...+....|+.- ......+.+|.++.++.+.+..++.+++||.. T Consensus 31 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g---------------~~~~~~~~~~~~l~~l~~~~~~npiv~~~I~~ 95 (547) T protein:vir:63 31 IQQREQEQISKAMNNKEVAYSQPVIGSMSANPG---------------FKTKPSIRNNQDLHGVLKKFGGNIILNAIINT 95 (547) T ss_pred hhhhhHHHHHHhhcccchhhhchhhheeecccc---------------cccCCccCChhHHHHHHHHhhcCHHHHHHHHH Confidence 3333111 000000000 000111111100 00112233444444544444445555555544 Q ss_pred hhhhHH---------------------------------------HhhhccCC------CcHHHHHHHHHHHHHhCCeeE Q lcl|Aclame:pro 76 KRNVLA---------------------------------------STYIPHPL------LSRQDFSRFALDYLVFGNAFL 110 (340) Q Consensus 76 k~n~~~---------------------------------------~~~~pnp~------~~~~~~~~~~~~~ll~Gnay~ 110 (340) +++..+ ....||++ +..+|+++++.+++++||+|+ T Consensus 96 ~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~ 175 (547) T protein:vir:63 96 RSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNF 175 (547) T ss_pred HHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccchHHHHHHHHHHHHHhhCCEEE Confidence 443222 12245554 345788899999999999999 Q ss_pred EEEecCCceeEEEEEecCcceeecccC--------ceEEEEeCCceEEEEccccEEEecCCC---CCCCcccccchhhhH Q lcl|Aclame:pro 111 EQRHSVTGQLIKLLTSPAKYTRRGVDD--------SVFWFVENFTQPHEFAPDTVFHLLEPD---INQEIYGLPEYLSAL 179 (340) Q Consensus 111 ~i~r~~~G~~~~L~pl~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~dvih~r~~~---~~~~~~G~sp~~~a~ 179 (340) +++|+..|+|++|+||+|.+|++..+. .+|+++..++....|+++||||++.+. +.++.||+||+.+++ T Consensus 176 ~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~~~~~~G~Spi~~~~ 255 (547) T protein:vir:63 176 EKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIAL 255 (547) T ss_pred EEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCCCcccccccccHHHHHH Confidence 999999999999999999999876432 235556667777889999999998653 344788999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCC-CCcCHHHHHHHHHHHHH-hcCcccccccccccCCccccccceeeccch Q lcl|Aclame:pro 180 NSAWLNESATLFRRKYYQNGAHAGYIMYVTD-PAQSATDVESLRDAMRN-SKGLGNFKNLFFYSPNGKPDGIKIVPLSEV 257 (340) Q Consensus 180 ~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~ 257 (340) .+|.++.++++|+.+||+||++|+|||.+++ ..+++++++++++.|++ +.|.+|+|+++|+.+ +|++|+|++++ T Consensus 256 ~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~~----~g~~~~~l~~~ 331 (547) T protein:vir:63 256 KQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSA----EDVKFVNMTPS 331 (547) T ss_pred HHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCcccccccccccC----CCceEEEcCCC Confidence 9999999999999999999999999999874 45899999999999977 467799999877643 57899999999 Q ss_pred hhHHHHHHHHHhhHHHHHHHhcCCHHHccccccc--------ccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccc Q lcl|Aclame:pro 258 ATKDDFFNIKKASAADLMDAHRVPFQLMGGKPEN--------IGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEV 328 (340) Q Consensus 258 ~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~--------~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~ 328 (340) ++|+||+|++++++++||++|||||++||+...+ +.+++|+|++...|+++||+||+++||+ ||.+|..+. T Consensus 332 ~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~ 411 (547) T protein:vir:63 332 ARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEF 411 (547) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc Confidence 9999999999999999999999999999986542 2378999999999999999999999986 999996542 Q ss_pred ---eeecccccCCCC Q lcl|Aclame:pro 329 ---IRFKEYTLDNPE 340 (340) Q Consensus 329 ---~rf~~~~l~~~~ 340 (340) ++|+ |+.++.+ T Consensus 412 ~~~~~~~-f~~~~~~ 425 (547) T protein:vir:63 412 GDKYTFQ-FVGGDIK 425 (547) T ss_pred CCceEEE-eeccccc Confidence 2222 2222222 No 21 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=1.7e-60 Score=348.26 Aligned_cols=330 Identities=14% Similarity=0.206 Sum_probs=235.7 Q ss_pred CCCCCCC-ccccccc-CCccceEEEECCCceeecC-cchhhheeeeeecCchhhcccchHH--hhhh----hhcchhhhh Q lcl|Aclame:pro 1 MSKRKPR-KAVAMTA-SAPQKMEAFTFGEPVPVLD-KRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHHSS 71 (340) Q Consensus 1 m~~~~~~-~~~~~~~-~~~~~~~~~~f~~p~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~~ 71 (340) |=--... .++++.+ ..+.--..|.+ .|..-+. .....-+.+.+....++..||++.+ ++++ ++.+..-.. T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~~~~ 79 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQMQDSYYY-APAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTET 79 (518) T ss_pred CcccCceeecCchhhhhhhhhhccccc-ccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCCCce Confidence 3222111 0111100 00000111111 1111000 0011112222233345556666532 2211 121111111 Q ss_pred hhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeC-- Q lcl|Aclame:pro 72 PIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVEN-- 145 (340) Q Consensus 72 ~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~-- 145 (340) .. ..+........|||+++. +||+.++.+++++||+|++++|+..|++++|+|++|..|++..+. ..+|.+.. T Consensus 80 ~~-~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~y~~~~~~ 158 (518) T protein:vir:10 80 EE-SDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQAGA 158 (518) T ss_pred ec-cchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEEEEEEecC Confidence 11 111122233489999986 667788889999999999999999999999999999999876543 34555543 Q ss_pred --CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHH Q lcl|Aclame:pro 146 --FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRD 223 (340) Q Consensus 146 --~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~ 223 (340) ++..+.|+++||||+|.+++.+.++|+||+.+++++|.++.++++|+.++|+||++|+|||++++ .+++++++++++ T Consensus 159 ~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~-~ls~e~~~~~k~ 237 (518) T protein:vir:10 159 GVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEK-RLSEAAQQRLRE 237 (518) T ss_pred CccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCC-CCCHHHHHHHHH Confidence 33567899999999999987655689999999999999999999999999999999999999775 689999999999 Q ss_pred HHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 224 AMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 224 ~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) .|++. .|.+|+|+++|++ +|++|+|++++++|+||+|.+++++++||++|||||++||+.+. ++++|+|++. T Consensus 238 ~~~~~~~G~~nag~v~vL~-----~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~--~t~sn~eq~~ 310 (518) T protein:vir:10 238 QFDRAHSGSSNTGKTMVVE-----EGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDR--ATFSNISAQM 310 (518) T ss_pred HHHHHhcCccccCcceEcC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCC--CCchhHHHHH Confidence 99875 5678999999985 67899999999999999999999999999999999999998654 6899999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCcc-----ceeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGME-----VIRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~-----~~rf~~~~l~~~~ 340 (340) ..|+++||+||+.+||+ ||++|..+ .++|+.-.|++.| T Consensus 311 ~~f~~~tL~P~l~~ie~~ln~~L~~~~~~~~~~~fd~~~llr~D 354 (518) T protein:vir:10 311 RAFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPD 354 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEechhhhccC Confidence 99999999999999985 99998654 3566655666666 No 22 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=5.4e-60 Score=345.52 Aligned_cols=329 Identities=15% Similarity=0.125 Sum_probs=231.0 Q ss_pred CC---C--CCCCcccccccCC--ccceE--EE-ECCCceeecCcchhhheeeeeec------------CchhhcccchHH Q lcl|Aclame:pro 1 MS---K--RKPRKAVAMTASA--PQKME--AF-TFGEPVPVLDKRDILDYVECISN------------GKWYEPPVSFSG 58 (340) Q Consensus 1 m~---~--~~~~~~~~~~~~~--~~~~~--~~-~f~~p~~~~~~~~~~~~~~~~~~------------~~~~~~pv~~~~ 58 (340) |. . +++.+.++..... +...+ +. .+|+-....+.-.+.+++...+. ...+..||++.+ T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 55 2 2222111111100 00000 11 11111111111112222221110 011223333211 Q ss_pred --hhhh----hhcchhhhhhhhhhhhhHHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcce Q lcl|Aclame:pro 59 --LAKS----LRSAVHHSSPIYVKRNVLASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYT 131 (340) Q Consensus 59 --l~~~----~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~ 131 (340) ++++ ++...- .......+-..+...+|||+++.. ||+.++.++++.||+|++++|+. |++++|+|+++.++ T Consensus 81 ~~iA~lp~~v~~~~~~-~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~L~pl~~~~v 158 (431) T protein:vir:10 81 GTIGMLPMNLISSDDS-KQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSG-NRPIRLIPMDRGSA 158 (431) T ss_pred HhhccCceEEEEecCc-eeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CceEEEEEEcCcee Confidence 1111 010000 000111111112335799999875 56677899999999999999985 89999999999988 Q ss_pred eecc--cCceEEEE-eCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEe Q lcl|Aclame:pro 132 RRGV--DDSVFWFV-ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYV 208 (340) Q Consensus 132 ~~~~--~~~~~y~~-~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~ 208 (340) .+.. ++..+|.+ ..+|..+.|+++||||+|.++ .|+++|+||+..+.++|.++.++++|..++|+||++|+|||++ T Consensus 159 ~~~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~ 237 (431) T protein:vir:10 159 KGRLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLS-IDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEV 237 (431) T ss_pred EEEEcCCCeEEEEEEeCCceEEEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEec Confidence 7654 34445544 456788899999999999886 5789999999999999999999999999999999999999998 Q ss_pred CCCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccc Q lcl|Aclame:pro 209 TDPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGG 287 (340) Q Consensus 209 ~~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~ 287 (340) ++ .+++++.+++++.|++. .|.+|+|+++|++ .|++|+|++++++|+||+|++++++++||++|||||++||+ T Consensus 238 ~~-~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~ 311 (431) T protein:vir:10 238 PK-ELSDNAYGRMKASVQENHTGSENAGSWMLLE-----EGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMM 311 (431) T ss_pred CC-CCCHHHHHHHHHHHHHHhcCccccCCceecC-----CCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCC Confidence 75 79999999999999765 6678999999984 57889999999999999999999999999999999999998 Q ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 288 KPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 288 ~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) .+ +++++|+|++.+.|+++||.||+++||+ ||++|..+ .++|+.-.|++.| T Consensus 312 ~~--~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d 369 (431) T protein:vir:10 312 DD--TSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGT 369 (431) T ss_pred CC--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhccC Confidence 54 5789999999999999999999999986 99998543 2566665666666 No 23 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=9.3e-61 Score=349.70 Aligned_cols=331 Identities=16% Similarity=0.181 Sum_probs=253.6 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) ||-+|+...+..-.+..+.+.+-+--.|++- .--.+ +......+++||+++..|..+.+.++.|++||..+++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~~~i 75 (651) T protein:vir:99 1 MTDTTGETQETKVHVEGLGGEADLAKSPNST---QIPDH--RIQSHNVGVNPPYNPDRLAAFLELNETLATGIRKKSRYE 75 (651) T ss_pred CCCccceeeeeEEEeeccccccccccccccc---ccchh--hhcccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhhhh Confidence 9988755433333333333333333333221 00112 223445689999999999999999999999999988766 Q ss_pred HHh---hh-----------------------------------ccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeE Q lcl|Aclame:pro 81 AST---YI-----------------------------------PHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLI 121 (340) Q Consensus 81 ~~~---~~-----------------------------------pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~ 121 (340) +.. +. .|+.++. .+++..+.|++.+||+|++++|+..|+++ T Consensus 76 ag~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv 155 (651) T protein:vir:99 76 VGFGFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGRPV 155 (651) T ss_pred hccCceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccchh Confidence 532 01 1333444 45667778999999999999999999999 Q ss_pred EEEEecCcceeecccCc----------------------------------eEEE------------------------- Q lcl|Aclame:pro 122 KLLTSPAKYTRRGVDDS----------------------------------VFWF------------------------- 142 (340) Q Consensus 122 ~L~pl~~~~~~~~~~~~----------------------------------~~y~------------------------- 142 (340) .|+++++..+|...+.. .|+. T Consensus 156 ~L~~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~ 235 (651) T protein:vir:99 156 GLAYVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYR 235 (651) T ss_pred hhhhcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEec Confidence 99999998765432210 0000 Q ss_pred --------------------EeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCC Q lcl|Aclame:pro 143 --------------------VENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHA 202 (340) Q Consensus 143 --------------------~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p 202 (340) ..+.+....++++||||||.+++.+++||+||+..++.++.++.++++|+.++|+||++| T Consensus 236 ~d~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p 315 (651) T protein:vir:99 236 EDEESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIP 315 (651) T ss_pred cCcceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 011122345788999999999988999999999999999999999999999999999999 Q ss_pred ceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCc------cccccceeeccchh-hHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 203 GYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNG------KPDGIKIVPLSEVA-TKDDFFNIKKASAADLM 275 (340) Q Consensus 203 ~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~------~~~g~~~~pl~~~~-~d~qf~e~~~~~~~~I~ 275 (340) +|||+++++.+++++++++++.|++.. +|+|+++|++.++ ...|++|+||++++ +|+||+|++++++++|| T Consensus 316 ~gil~~~~~~ls~e~~~~lr~~~~~~~--~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa 393 (651) T protein:vir:99 316 RMVIKVTGGELSEESKRDLRQMLNGLR--EESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIA 393 (651) T ss_pred ceEEEecCCCCCHHHHHHHHHHHHHHh--ccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHH Confidence 999999988899999999999999755 4788988886533 23599999999986 59999999999999999 Q ss_pred HHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccc---------eeecccccCCCC Q lcl|Aclame:pro 276 DAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEV---------IRFKEYTLDNPE 340 (340) Q Consensus 276 ~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~---------~rf~~~~l~~~~ 340 (340) ++|||||++||+.+ .++++|+|++.+.|+++||+||+++||+ ||.+|..+. +.|+.-.+++.| T Consensus 394 ~afgVPp~~lG~~~--~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D 466 (651) T protein:vir:99 394 KVLEVPPVKIGVTD--SANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQE 466 (651) T ss_pred HHhCCCHHHhccCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhcc Confidence 99999999999865 4689999999999999999999999996 999986542 334444455555 No 24 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=7e-60 Score=344.89 Aligned_cols=320 Identities=14% Similarity=0.156 Sum_probs=231.4 Q ss_pred CC-----CCCCCcccccccCCccceEEEE-CCCceee-----cCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh Q lcl|Aclame:pro 1 MS-----KRKPRKAVAMTASAPQKMEAFT-FGEPVPV-----LDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH 69 (340) Q Consensus 1 m~-----~~~~~~~~~~~~~~~~~~~~~~-f~~p~~~-----~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~ 69 (340) |- ++|.. ..+.+.-....+..+. +.....| |...+++.|+....+ ..-..|+.+ ++.+. T Consensus 17 ~~~~~lf~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~-~iA~lp~~v------~~~~~-- 86 (424) T protein:vir:45 17 VLLDALFRSKSL-ENPSTPITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSS-SLAQMPLHV------MRRHK-- 86 (424) T ss_pred HHHHhhccccCC-CCCccccchhhhhhhccccCCceechHHhhccHHHHHHHHHHHH-HHhhCceEE------EEecC-- Confidence 32 22211 1111110000010100 0011111 112222222221111 011122211 11111 Q ss_pred hhhhhhhhhhHH---HhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-eEEEEe Q lcl|Aclame:pro 70 SSPIYVKRNVLA---STYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-VFWFVE 144 (340) Q Consensus 70 ~~~i~~k~n~~~---~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-~~y~~~ 144 (340) +..... .++.+ ....|||+++.. ||+.++.+++++||+|+++.|+..|++++|+|++|..+.+..+++ .+|.+. T Consensus 87 ~~~~~~-~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~~~~~y~~~ 165 (424) T protein:vir:45 87 GKVEPA-RDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTGGRYTYGLY 165 (424) T ss_pred Cceeec-ccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcCCeEEEEEE Confidence 111111 12222 234799999875 566778899999999999999999999999999999988876655 456666 Q ss_pred CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDA 224 (340) Q Consensus 145 ~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~ 224 (340) ..+....++++||||+|.+++ ++++|+||+..++++|.++.++++|+.++|+||++|++||++++ .+++|+.+++++. T Consensus 166 ~~~~~~~~~~~eVih~r~~~~-d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~~~ 243 (424) T protein:vir:45 166 NEYGAFAISPDDMIHIRALGN-NQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKS-GLNKESWGWLKDQ 243 (424) T ss_pred ecCceEEECcccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHHHH Confidence 666677899999999998874 79999999999999999999999999999999999999999876 5899999999999 Q ss_pred HHHhc-Cc-ccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 225 MRNSK-GL-GNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 225 ~~~~~-g~-~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) |++.. |. +|+|++++++ .|++|+|++++++|+||+|++++++++||++|||||++||+.+ +++++|+|++. T Consensus 244 ~~~~~~g~~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~sn~eq~~ 316 (424) T protein:vir:45 244 WQKASQALRRQENKTMLLP-----ADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLE--KATFSNISAQA 316 (424) T ss_pred HHHHhccccccCCceeEcC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccHHHHH Confidence 98754 53 6899999984 6788999999999999999999999999999999999999865 46899999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) +.|+++||.||++.||+ ||++|..+ .++|+.-.|++.+ T Consensus 317 ~~f~~~tL~P~~~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d 362 (424) T protein:vir:45 317 IQFVRYTMMPWVTNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGT 362 (424) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhhcCCcEEEeechhhhccC Confidence 99999999999999985 99998643 2677766776666 No 25 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=1.3e-59 Score=343.40 Aligned_cols=321 Identities=14% Similarity=0.141 Sum_probs=230.1 Q ss_pred CCCCCCCccccc-----------------ccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAM-----------------TASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSL 63 (340) Q Consensus 1 m~~~~~~~~~~~-----------------~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~ 63 (340) |.++...+.... ++.+...+.+..|.... .....+.+|.++..+.+.+ T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~~~ 91 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGY---------------KTKPSIRNSQDLHKTLKKF 91 (574) T ss_pred cccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccc---------------cCcCccCCcccHHHHHHhh Confidence 555531111100 00100011111222110 0111223333333322222 Q ss_pred hcchhhhhhhhhhh-------------------------------------hhHHHhh------hccCCC--cHHHHHHH Q lcl|Aclame:pro 64 RSAVHHSSPIYVKR-------------------------------------NVLASTY------IPHPLL--SRQDFSRF 98 (340) Q Consensus 64 r~~~~~~~~i~~k~-------------------------------------n~~~~~~------~pnp~~--~~~~~~~~ 98 (340) ..++.+..|+..+. .+.+..+ .|||.+ ..+|++.+ T Consensus 92 ~~~~iv~~~i~~~~~~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~l 171 (574) T protein:vir:80 92 GNNIILNAIINTRSNQVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKL 171 (574) T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHH Confidence 22222222222211 1112222 244543 35789999 Q ss_pred HHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--------ceEEEEeCCceEEEEccccEEEecCCC---CCC Q lcl|Aclame:pro 99 ALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--------SVFWFVENFTQPHEFAPDTVFHLLEPD---INQ 167 (340) Q Consensus 99 ~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--------~~~y~~~~~~~~~~~~~~dvih~r~~~---~~~ 167 (340) +.+++++||+|++++|+..|+|++|+|++|.+|++..+. ..||++..++....|+++||||++... +.+ T Consensus 172 v~~lll~Gnayi~i~r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~ 251 (574) T protein:vir:80 172 VRATYMYDQVNFEKVFDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIEV 251 (574) T ss_pred HHHHHhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCCCccc Confidence 999999999999999999999999999999999876543 357777888888899999999998543 345 Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC-CCcCHHHHHHHHHHHHHh-cCcccccccccccCCcc Q lcl|Aclame:pro 168 EIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD-PAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGK 245 (340) Q Consensus 168 ~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~-~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~ 245 (340) ++||+||+.+++.+|.++.++++|..++|+||++|+|||.+++ ..+++++.+++++.|++. .|..|+|+++++.+ T Consensus 252 ~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~--- 328 (574) T protein:vir:80 252 GQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSA--- 328 (574) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecC--- Confidence 7899999999999999999999999999999999999999865 458999999999999875 67789999766643 Q ss_pred ccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccc--------cccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 246 PDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENI--------GSLGDVEKVAKVFVRNELSPLQDRF 317 (340) Q Consensus 246 ~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~--------~~~~n~e~~~~~f~~~~l~P~~~~i 317 (340) .|++|+|+++++.|+||+|++++++++||++|||||++||+.+..+ .+++|+|++...|+++||+||+++| T Consensus 329 -~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~i 407 (574) T protein:vir:80 329 -EDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFI 407 (574) T ss_pred -CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH Confidence 5789999999999999999999999999999999999999876533 3578999999999999999999999 Q ss_pred HH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 318 RE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 318 e~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) |+ ||++|..+..++..++|+..+ T Consensus 408 e~~ln~~Ll~~~~~~~~~~f~~~d 431 (574) T protein:vir:80 408 EDTVNTYIVAEFGEKYQFQFRGGD 431 (574) T ss_pred HHHHHhhhhhhcCCceEEEecccc Confidence 96 999986553333334444444 No 26 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=2e-59 Score=342.42 Aligned_cols=328 Identities=15% Similarity=0.147 Sum_probs=241.6 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhhe-eee-eecCc-----------hhhcccchHH--hhhh--- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDY-VEC-ISNGK-----------WYEPPVSFSG--LAKS--- 62 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~-~~~-~~~~~-----------~~~~pv~~~~--l~~~--- 62 (340) |++-=.+...+..+...+ +.|.++.+...++..++... ++- ...+. .+-.||++.+ ++.+ T Consensus 1 ~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~ 78 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRS--SLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLG 78 (434) T ss_pred Cccchhhhhhhcccccch--hhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceE Confidence 998855433332222222 13344443333332222211 110 01111 1223333321 1111 Q ss_pred -hhcchhhhhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC Q lcl|Aclame:pro 63 -LRSAVHHSSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD 137 (340) Q Consensus 63 -~r~~~~~~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~ 137 (340) ++.... +..... .++.+ ...+|||+++. +||+.++.+++++||+|+++.++ .|++++|+|++|..|.+..+. T Consensus 79 ~~~~~~~-g~~~~~-~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~v~~~~~~ 155 (434) T protein:vir:43 79 VYERKAD-GSRVDA-RSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSRVDLECDE 155 (434) T ss_pred EEEEcCC-Cccccc-cccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEcC Confidence 010000 000111 12222 23479999875 56778888999999999999887 699999999999999876544 Q ss_pred c--eE-EEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC Q lcl|Aclame:pro 138 S--VF-WFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS 214 (340) Q Consensus 138 ~--~~-y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~ 214 (340) + .+ +++..++..+.|+++||||+|.++ .++++|+||+..++.++.++.++++|..++|+||++|+|||++++ .++ T Consensus 156 ~g~~~y~~~~~~g~~~~~~~~eVih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~l~ 233 (434) T protein:vir:43 156 NGRLKYFYTTKKGARREIERTNMLHIPAFT-LDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDR-ILQ 233 (434) T ss_pred CCeEEEEEEecCceEEEEccccEEEecCcC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCC-CCC Confidence 3 33 344567788899999999999874 689999999999999999999999999999999999999999875 689 Q ss_pred HHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccc Q lcl|Aclame:pro 215 ATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGS 294 (340) Q Consensus 215 ~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~ 294 (340) +++.+++|+.|++..|+.|+|+++|++ +|++|+|+++++.|+||+|++++++++||++|||||++||+.+..+.+ T Consensus 234 ~e~~~~~r~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~ 308 (434) T protein:vir:43 234 PAQREEFREYVKSVSGAMNSGRSPVLE-----QGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNW 308 (434) T ss_pred HHHHHHHHHHHHHhcCccccCCccccC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccc Confidence 999999999999999999999999985 578899999999999999999999999999999999999998776667 Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 295 LGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 295 ~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) ++|+|++...|+++||.||+.+||+ ||++|... .++|+.-.|++.| T Consensus 309 ~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d 361 (434) T protein:vir:43 309 GTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKAD 361 (434) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccC Confidence 8999999999999999999999986 99998533 3566665666666 No 27 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=9e-60 Score=344.30 Aligned_cols=325 Identities=16% Similarity=0.151 Sum_probs=234.0 Q ss_pred CCCCCCCcccccccC-CccceEEE-----ECCCc---------eeecCcchhhheeeeeecCchhhcccchHHhhhhhhc Q lcl|Aclame:pro 1 MSKRKPRKAVAMTAS-APQKMEAF-----TFGEP---------VPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRS 65 (340) Q Consensus 1 m~~~~~~~~~~~~~~-~~~~~~~~-----~f~~p---------~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~ 65 (340) +-++.++........ .++....| .|+.+ ...|...+++.|+.+.+. ..-..|+.+ ++. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~-~iA~lp~~~------~~~ 76 (454) T protein:vir:93 4 LLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQ-DIAKMRLRL------MQT 76 (454) T ss_pred ccccCcccccccccccchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHH-hhccCceEE------EEe Confidence 555533333222221 11111222 12211 111111122222221111 011112211 111 Q ss_pred chhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc--CceEEE Q lcl|Aclame:pro 66 AVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD--DSVFWF 142 (340) Q Consensus 66 ~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~--~~~~y~ 142 (340) +...................|||+++. +||+.++.++++.||||++++|+..|++++|+|++|.+|++..+ +..+|. T Consensus 77 ~~~g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y~ 156 (454) T protein:vir:93 77 DAQGIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYR 156 (454) T ss_pred ccCCccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEEEE Confidence 110000000111112233589999886 56677788999999999999999999999999999999987654 455666 Q ss_pred EeCC-----ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHH Q lcl|Aclame:pro 143 VENF-----TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATD 217 (340) Q Consensus 143 ~~~~-----~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~ 217 (340) +... +....++++||||+|...+.+++||+||+..+..++.++.++++|..++|+||++|+|||++++ .+++++ T Consensus 157 ~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~ 235 (454) T protein:vir:93 157 ITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPG-SITEEN 235 (454) T ss_pred EEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCC-CCCHHH Confidence 6533 3467899999999997667899999999999999999999999999999999999999999875 689999 Q ss_pred HHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccccccc Q lcl|Aclame:pro 218 VESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGD 297 (340) Q Consensus 218 ~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n 297 (340) .+++++.|++..++.|+|+++|++ .|++|+|++.+++|+||+|++++++++||++|||||++||+.. .++++| T Consensus 236 ~~~~~~~~~~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~sn 308 (454) T protein:vir:93 236 AKKLKSNWDSGYTGENAGKTAILS-----NGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQ--PPSSDN 308 (454) T ss_pred HHHHHHHHHHHhcccccCCceecc-----CCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC--CCcchh Confidence 999999999887779999999985 5788999999999999999999999999999999999999855 368999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc---ceeecccccCCCC Q lcl|Aclame:pro 298 VEKVAKVFVRNELSPLQDRFRE-VNDWLGME---VIRFKEYTLDNPE 340 (340) Q Consensus 298 ~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~---~~rf~~~~l~~~~ 340 (340) +|++.+.|+++||.||++.||+ +|++|... .++|+--.|++.| T Consensus 309 ~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~f~~~~ll~~D 355 (454) T protein:vir:93 309 VEALEQQYYSQCLQTLIESIELLLDEALETGENESTEFDVTTLLRMD 355 (454) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEeechhhhccC Confidence 9999999999999999999986 99999543 3556554555555 No 28 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=1.7e-59 Score=342.76 Aligned_cols=331 Identities=13% Similarity=0.179 Sum_probs=234.0 Q ss_pred CCCCCCC-cccccccCCccceEEEECCCceeecCcch-hhheeeeeecCchhhcccchHH--hhhh----hhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPR-KAVAMTASAPQKMEAFTFGEPVPVLDKRD-ILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~-~~~~~~~~~~~~~~~~~f~~p~~~~~~~~-~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~~~ 72 (340) |=--... .+.++.+...+.+...-|+.|..-..-.. ..-+.+.+.....+..||++.+ ++++ ++.+..-... T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~~~~~ 80 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTETE 80 (518) T ss_pred CcccCceeeccchhhhhhhhhhhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCCcccc Confidence 3211111 01111010011111111122221110000 0111112223344555665432 1111 1111110000 Q ss_pred hhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeC--- Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVEN--- 145 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~--- 145 (340) ...........+|||+++. +||+.++.++++.||+|++++|+..|++++|+|++|.+|++..+. ..+|.+.. T Consensus 81 -~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~~~~~~~ 159 (518) T protein:vir:78 81 -EHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQAGAG 159 (518) T ss_pred -ccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEEEEEecCC Confidence 0111122234589999986 567788899999999999999999999999999999999876543 34455542 Q ss_pred -CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 146 -FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDA 224 (340) Q Consensus 146 -~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~ 224 (340) ++..+.|+++||||+|.+++...++|+||+.+++.+|.++.++++|+.++|+||++|+|||++++ .+++++.+++++. T Consensus 160 ~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~-~ls~e~~~~~k~~ 238 (518) T protein:vir:78 160 VGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEK-RLSPEAQQRLREQ 238 (518) T ss_pred ccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCC-CCCHHHHHHHHHH Confidence 34567899999999999887655689999999999999999999999999999999999999765 6899999999999 Q ss_pred HHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHH Q lcl|Aclame:pro 225 MRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK 303 (340) Q Consensus 225 ~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~ 303 (340) |++. .|.+|+|++++++ .|++|+|++++++|+||+|++++++++||++|||||++||+.+. ++++|+|++.. T Consensus 239 ~~~~~~G~~nag~~~vL~-----~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~--st~sn~e~~~~ 311 (518) T protein:vir:78 239 FDRAHAGSSNTGKTMVVE-----EGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDR--ATFSNISAQMR 311 (518) T ss_pred HHHHhcCcccCCceeEcC-----CCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCC--CCchhHHHHHH Confidence 9765 5668999999985 57899999999999999999999999999999999999998654 68999999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHhhCcc-----ceeecccccCCCC Q lcl|Aclame:pro 304 VFVRNELSPLQDRFRE-VNDWLGME-----VIRFKEYTLDNPE 340 (340) Q Consensus 304 ~f~~~~l~P~~~~ie~-ln~~l~~~-----~~rf~~~~l~~~~ 340 (340) .|+++||+||+.+||+ ||++|... .++|+.-.|++.| T Consensus 312 ~f~~~tL~P~~~~ie~eln~~L~~~~~~~~~~~fd~~~Llr~D 354 (518) T protein:vir:78 312 AFYRDTMAIPIARIQSAMDKYVGQYWVRKNRMKFDIDDVIQPD 354 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccCcceEEeechhhhccC Confidence 9999999999999986 99998653 3556655666666 No 29 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=2e-59 Score=342.40 Aligned_cols=324 Identities=14% Similarity=0.125 Sum_probs=236.0 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheee---------eee----cCchhhcccchHH--hhhh--- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVE---------CIS----NGKWYEPPVSFSG--LAKS--- 62 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~---------~~~----~~~~~~~pv~~~~--l~~~--- 62 (340) |+|.|.|.-...+++- +. .||-|.+. +...+.+.+. +.. ....+..||++.+ ++++ T Consensus 1 ~~~~~~~~~~~~~~~~---~~--~~g~~~s~-~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~ 74 (437) T protein:vir:10 1 MKQGKQRALGRIKSSF---LK--WLGVPISL-TDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLN 74 (437) T ss_pred CCcchhhhhhhhHHhh---hh--hcCCcccC-CchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCcee Confidence 9877655322111110 00 11222211 1111111111 000 0112333444322 1111 Q ss_pred -hhcchhhhhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc- Q lcl|Aclame:pro 63 -LRSAVHHSSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD- 136 (340) Q Consensus 63 -~r~~~~~~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~- 136 (340) ++.... +. .....++.+ ...+|||+++. +|++.++.+++++||||++++|+. |++++|+|++|..|.+..+ T Consensus 75 ~~~~~~~-g~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-g~~~~L~~l~p~~v~i~~~~ 151 (437) T protein:vir:10 75 LYQTKPD-GT-RVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA-GVLIGLELMLPQRTTVKRLT 151 (437) T ss_pred EEEEcCC-Cc-eeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCcceEEEECC Confidence 010000 00 001112222 23479999886 566677889999999999999995 9999999999999887654 Q ss_pred -CceEEEEe-CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC Q lcl|Aclame:pro 137 -DSVFWFVE-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS 214 (340) Q Consensus 137 -~~~~y~~~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~ 214 (340) +..+|.+. .+|....++++||||+|.++ .|+++|+||+..++.++.++.++++|..++|+||++|+|||++++ .++ T Consensus 152 ~g~~~y~~~~~~g~~~~~~~~dIih~r~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~ 229 (437) T protein:vir:10 152 SGALQYTYRNVDGTVSTLAEDDVFHVRGFS-LDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQ-ILQ 229 (437) T ss_pred CCeEEEEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCC Confidence 33455544 56778899999999999886 589999999999999999999999999999999999999999765 689 Q ss_pred HHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccc Q lcl|Aclame:pro 215 ATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIG 293 (340) Q Consensus 215 ~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~ 293 (340) +++.+++++.|++. .|.+|+|+++|++ +|++|+|+++++.|+||+|++++++++||++|||||++||+.+..+. T Consensus 230 ~e~~~~~~~~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~ 304 (437) T protein:vir:10 230 KEKRAEIRTDLAEQFGGAMQAGKTMVLE-----AGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTS 304 (437) T ss_pred HHHHHHHHHHHHHHhcCccccCcceecc-----CCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccc Confidence 99999999999864 6779999999985 57889999999999999999999999999999999999999887667 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 294 SLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 294 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +++|+|++.+.|+++||+||+..||+ ||++|..+ .++|+.-.|.+.| T Consensus 305 ~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d 358 (437) T protein:vir:10 305 WGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRAD 358 (437) T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEEechhhhccC Confidence 78999999999999999999999985 99988543 3556655555555 No 30 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=5.2e-59 Score=340.11 Aligned_cols=316 Identities=14% Similarity=0.123 Sum_probs=229.5 Q ss_pred CCCCCCCcccccccCCccceEEE--ECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAF--TFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~--~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) -+|.+.++.++.+.+-...+.+. -.+.|- +.++|.++..+.+.+..++.+.+||..+++ T Consensus 46 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~ 106 (563) T protein:vir:95 46 LTKSLYGQQQAYAEPFIEMMDTNPEFRDKRS-------------------YMKNEHNLHDVLKKFGNNPILNAIILTRSN 106 (563) T ss_pred HHhhhccCCCcchhhhHhhhccccccccccc-------------------CCCCcccHHHHHHHhhcchHHHHHHHHHHH Confidence 23322221211111111112211 111222 344455555555554445555555443333 Q ss_pred hHH-------------------------------------Hhh------hccCC--CcHHHHHHHHHHHHHhCCeeEEEE Q lcl|Aclame:pro 79 VLA-------------------------------------STY------IPHPL--LSRQDFSRFALDYLVFGNAFLEQR 113 (340) Q Consensus 79 ~~~-------------------------------------~~~------~pnp~--~~~~~~~~~~~~~ll~Gnay~~i~ 113 (340) ..+ ..+ .++|+ ++++|++.++.+++++||||++++ T Consensus 107 ~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~ 186 (563) T protein:vir:95 107 QVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKV 186 (563) T ss_pred HHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEE Confidence 222 111 13333 345788999999999999999865 Q ss_pred --ecCCceeEEEEEecCcceeecccCc--------eEEEEeCCceEEEEccccEEEe-cCCC--CCCCcccccchhhhHH Q lcl|Aclame:pro 114 --HSVTGQLIKLLTSPAKYTRRGVDDS--------VFWFVENFTQPHEFAPDTVFHL-LEPD--INQEIYGLPEYLSALN 180 (340) Q Consensus 114 --r~~~G~~~~L~pl~~~~~~~~~~~~--------~~y~~~~~~~~~~~~~~dvih~-r~~~--~~~~~~G~sp~~~a~~ 180 (340) |+..|++++|+|++|.+|++..+.+ .|+++..++....+.++||||+ +.+. +..++||+||+.+++. T Consensus 187 ~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~ 266 (563) T protein:vir:95 187 FNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMK 266 (563) T ss_pred EEecCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHH Confidence 7888999999999999998865443 2445556667778999997755 4443 3348899999999999 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CcCHHHHHHHHHHHHHh-cCccccccc-ccccCCccccccceeeccch Q lcl|Aclame:pro 181 SAWLNESATLFRRKYYQNGAHAGYIMYVTDP-AQSATDVESLRDAMRNS-KGLGNFKNL-FFYSPNGKPDGIKIVPLSEV 257 (340) Q Consensus 181 ~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~-~~~~e~~~~l~~~~~~~-~g~~n~~~~-~vl~~~~~~~g~~~~pl~~~ 257 (340) +|.++.++++|+.++|+||++|+|||.++++ .+++++.+++++.|++. .|.+|+|++ +|+ .+|++|+|++++ T Consensus 267 ~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl-----~~G~~~~~l~~~ 341 (563) T protein:vir:95 267 EFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVM-----ADDIKFVNMTPT 341 (563) T ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEc-----CCCceEEeccCC Confidence 9999999999999999999999999998754 58999999999999875 677899996 555 357899999999 Q ss_pred hhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccc---------cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc Q lcl|Aclame:pro 258 ATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENI---------GSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME 327 (340) Q Consensus 258 ~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~ 327 (340) ++|+||+|++++++++||++|||||++||+.+..+ .+++|+|++.+.|+++||+||+++||+ ||++|..+ T Consensus 342 ~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~ 421 (563) T protein:vir:95 342 ANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISE 421 (563) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh Confidence 99999999999999999999999999999876432 255789999999999999999999995 99998766 Q ss_pred ceeecccccCCCC Q lcl|Aclame:pro 328 VIRFKEYTLDNPE 340 (340) Q Consensus 328 ~~rf~~~~l~~~~ 340 (340) ......++|++.| T Consensus 422 ~~~~~~~~f~r~D 434 (563) T protein:vir:95 422 YGDKYTFQFVGGD 434 (563) T ss_pred cccccEEEeccCC Confidence 4333345566666 No 31 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=5.2e-59 Score=340.11 Aligned_cols=316 Identities=14% Similarity=0.123 Sum_probs=229.5 Q ss_pred CCCCCCCcccccccCCccceEEE--ECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAF--TFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~--~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) -+|.+.++.++.+.+-...+.+. -.+.|- +.++|.++..+.+.+..++.+.+||..+++ T Consensus 46 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~ 106 (563) T protein:vir:99 46 LTKSLYGQQQAYAEPFIEMMDTNPEFRDKRS-------------------YMKNEHNLHDVLKKFGNNPILNAIILTRSN 106 (563) T ss_pred HHhhhccCCCcchhhhHhhhccccccccccc-------------------CCCCcccHHHHHHHhhcchHHHHHHHHHHH Confidence 23322221211111111112211 111222 344455555555554445555555443333 Q ss_pred hHH-------------------------------------Hhh------hccCC--CcHHHHHHHHHHHHHhCCeeEEEE Q lcl|Aclame:pro 79 VLA-------------------------------------STY------IPHPL--LSRQDFSRFALDYLVFGNAFLEQR 113 (340) Q Consensus 79 ~~~-------------------------------------~~~------~pnp~--~~~~~~~~~~~~~ll~Gnay~~i~ 113 (340) ..+ ..+ .++|+ ++++|++.++.+++++||||++++ T Consensus 107 ~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~ 186 (563) T protein:vir:99 107 QVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKV 186 (563) T ss_pred HHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEE Confidence 222 111 13333 345788999999999999999865 Q ss_pred --ecCCceeEEEEEecCcceeecccCc--------eEEEEeCCceEEEEccccEEEe-cCCC--CCCCcccccchhhhHH Q lcl|Aclame:pro 114 --HSVTGQLIKLLTSPAKYTRRGVDDS--------VFWFVENFTQPHEFAPDTVFHL-LEPD--INQEIYGLPEYLSALN 180 (340) Q Consensus 114 --r~~~G~~~~L~pl~~~~~~~~~~~~--------~~y~~~~~~~~~~~~~~dvih~-r~~~--~~~~~~G~sp~~~a~~ 180 (340) |+..|++++|+|++|.+|++..+.+ .|+++..++....+.++||||+ +.+. +..++||+||+.+++. T Consensus 187 ~~rd~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~ 266 (563) T protein:vir:99 187 FNKNNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMK 266 (563) T ss_pred EEecCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHH Confidence 7888999999999999998865443 2445556667778999997755 4443 3348899999999999 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CcCHHHHHHHHHHHHHh-cCccccccc-ccccCCccccccceeeccch Q lcl|Aclame:pro 181 SAWLNESATLFRRKYYQNGAHAGYIMYVTDP-AQSATDVESLRDAMRNS-KGLGNFKNL-FFYSPNGKPDGIKIVPLSEV 257 (340) Q Consensus 181 ~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~-~~~~e~~~~l~~~~~~~-~g~~n~~~~-~vl~~~~~~~g~~~~pl~~~ 257 (340) +|.++.++++|+.++|+||++|+|||.++++ .+++++.+++++.|++. .|.+|+|++ +|+ .+|++|+|++++ T Consensus 267 ~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl-----~~G~~~~~l~~~ 341 (563) T protein:vir:99 267 EFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVM-----ADDIKFVNMTPT 341 (563) T ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEc-----CCCceEEeccCC Confidence 9999999999999999999999999998754 58999999999999875 677899996 555 357899999999 Q ss_pred hhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccc---------cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc Q lcl|Aclame:pro 258 ATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENI---------GSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME 327 (340) Q Consensus 258 ~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~ 327 (340) ++|+||+|++++++++||++|||||++||+.+..+ .+++|+|++.+.|+++||+||+++||+ ||++|..+ T Consensus 342 ~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~ 421 (563) T protein:vir:99 342 ANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISE 421 (563) T ss_pred hhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh Confidence 99999999999999999999999999999876432 255789999999999999999999995 99998766 Q ss_pred ceeecccccCCCC Q lcl|Aclame:pro 328 VIRFKEYTLDNPE 340 (340) Q Consensus 328 ~~rf~~~~l~~~~ 340 (340) ......++|++.| T Consensus 422 ~~~~~~~~f~r~D 434 (563) T protein:vir:99 422 YGDKYTFQFVGGD 434 (563) T ss_pred cccccEEEeccCC Confidence 4333345566666 No 32 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=2.2e-59 Score=342.19 Aligned_cols=312 Identities=13% Similarity=0.085 Sum_probs=225.6 Q ss_pred eEEE--ECCCceeecCcchhhhe-eeeeecCchhhcccchHHhhhhhhcchhh---h-hhhhhhh-hhHHHhhhccCCCc Q lcl|Aclame:pro 20 MEAF--TFGEPVPVLDKRDILDY-VECISNGKWYEPPVSFSGLAKSLRSAVHH---S-SPIYVKR-NVLASTYIPHPLLS 91 (340) Q Consensus 20 ~~~~--~f~~p~~~~~~~~~~~~-~~~~~~~~~~~~pv~~~~l~~~~r~~~~~---~-~~i~~k~-n~~~~~~~pnp~~~ 91 (340) |+.| .+|+++.+.+. ..... .+.+.....+-.||++.+ ..+-..+.+ . ..+..+. -..+...+|||+++ T Consensus 1 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~V~acV~~Ia--~~iA~lpl~l~~~~~~~~~~~~l~~lL~~~PN~~~t 77 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSAD-SVFGNGAKGWSNSAVAYRCISMLA--NNAASVDLVVRGPDGELDELHPLSQLWNVMPNRAMP 77 (723) T ss_pred CcccccCCCcccccccc-ccccccHHHHhhhHHHHHHHHHHH--HhhccceeEEEcCCCccchhhHHHHHHhhCCCCCCC Confidence 4444 22333222111 00000 011112233444554421 111111100 0 0011111 11122347999998 Q ss_pred H-HHHHHHHHHHHHhCCeeEEEEecC---CceeEEEEEecCcceeecccCc---------eEEEEe-CCceEEEEccccE Q lcl|Aclame:pro 92 R-QDFSRFALDYLVFGNAFLEQRHSV---TGQLIKLLTSPAKYTRRGVDDS---------VFWFVE-NFTQPHEFAPDTV 157 (340) Q Consensus 92 ~-~~~~~~~~~~ll~Gnay~~i~r~~---~G~~~~L~pl~~~~~~~~~~~~---------~~y~~~-~~~~~~~~~~~dv 157 (340) . +||+.++.++++.||+|+++.|++ .|.|++|+|+++..+.+....+ .+|.+. .+|..+.++++|| T Consensus 78 ~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~~~~dI 157 (723) T protein:vir:94 78 AQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRVPVLADEM 157 (723) T ss_pred HHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEecCceeEEecccce Confidence 6 556677789999999999999764 5889999999997665433221 223333 4677788999999 Q ss_pred EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHh-cCcccccc Q lcl|Aclame:pro 158 FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNS-KGLGNFKN 236 (340) Q Consensus 158 ih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~-~g~~n~~~ 236 (340) ||||.+++.+++||+||+..++.+|.++.++++|+.++|+||++|+|||+++ .+++++.+++++.|++. .|..|+|+ T Consensus 158 iHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~--~l~~e~~~~~~~~~~~~~~G~~Nagk 235 (723) T protein:vir:94 158 LWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG--DMDEQTFTKTVAAFRSQVEGVQNAGR 235 (723) T ss_pred EEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC--CCCHHHHHHHHHHHHHHhhchhhcCc Confidence 9999999899999999999999999999999999999999999999999864 48999999999999864 67799999 Q ss_pred cccccCCc-----cccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 237 LFFYSPNG-----KPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELS 311 (340) Q Consensus 237 ~~vl~~~~-----~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~ 311 (340) ++|+++.+ ..+|++|+|++++++|+||+|++++++++||++|||||++||. .++++|++++.+.|+++||+ T Consensus 236 ~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~----~st~sN~e~~~~~f~~~tL~ 311 (723) T protein:vir:94 236 HLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLG----GSTYENQAEAKAAVWTETLI 311 (723) T ss_pred ceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCC----CCCcccHHHHHHHHHHHHHH Confidence 99996433 2468999999999999999999999999999999999999963 36789999999999999999 Q ss_pred HHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 312 PLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 312 P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) ||+++||+ ||.+|.++. +.|+.-.|++.| T Consensus 312 P~~~~ie~~ln~~Ll~~~g~~~~~~f~~~~lLr~D 346 (723) T protein:vir:94 312 PQMEVMASITDLQLLPDIGWTVEWDFNSVPALQED 346 (723) T ss_pred HHHHHHHHHHhHhhcccccCceEEeecchhhhhcC Confidence 99999996 999986543 334444444555 No 33 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=1.4e-58 Score=337.74 Aligned_cols=333 Identities=13% Similarity=0.104 Sum_probs=233.9 Q ss_pred CCCC-------CCCccccc--------ccCCccceEEEECCCcee--ecCcchh----hheeeee----ecCchhhcccc Q lcl|Aclame:pro 1 MSKR-------KPRKAVAM--------TASAPQKMEAFTFGEPVP--VLDKRDI----LDYVECI----SNGKWYEPPVS 55 (340) Q Consensus 1 m~~~-------~~~~~~~~--------~~~~~~~~~~~~f~~p~~--~~~~~~~----~~~~~~~----~~~~~~~~pv~ 55 (340) |+-= +..+.... .+...+....+.|++|.. .+.+.+. -++..+. .....+..||+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 4321 11110000 001111122355666632 1111110 0121111 11123334444 Q ss_pred hHH--hhhh----hhcchhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCC--------cee Q lcl|Aclame:pro 56 FSG--LAKS----LRSAVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVT--------GQL 120 (340) Q Consensus 56 ~~~--l~~~----~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~--------G~~ 120 (340) +.+ ++++ .+...--...+.......+ ...|||+++. +|++.++.+++++||||++++|+.. |.+ T Consensus 81 ~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L-~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g~~ 159 (466) T protein:vir:81 81 VRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQI-LETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVDVV 159 (466) T ss_pred HHHHhhccCceEEEEecCCceeeccccHHHHH-hhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCcce Confidence 321 1111 0100000000111111222 2379999886 5567788899999999999999765 458 Q ss_pred EEEEEecCcceeecccCc----eEEEEeCC-----ceEEEEccccEEEecCC-CCCCCcccccchhhhHHHHHHHHHHHH Q lcl|Aclame:pro 121 IKLLTSPAKYTRRGVDDS----VFWFVENF-----TQPHEFAPDTVFHLLEP-DINQEIYGLPEYLSALNSAWLNESATL 190 (340) Q Consensus 121 ~~L~pl~~~~~~~~~~~~----~~y~~~~~-----~~~~~~~~~dvih~r~~-~~~~~~~G~sp~~~a~~~i~~~~aa~~ 190 (340) ++|+|+++..+.+..+.+ .+|.++.+ ++...++++||||||.+ ++.+++||+||+..++++|.++.++++ T Consensus 160 ~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~~~ 239 (466) T protein:vir:81 160 VEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAMSK 239 (466) T ss_pred eEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHHHH Confidence 999999999988766543 23444333 34578999999999965 578999999999999999999999999 Q ss_pred HHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHh Q lcl|Aclame:pro 191 FRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKA 269 (340) Q Consensus 191 ~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~ 269 (340) |..++|+||++|+|||+++ +.+++++++++++.|++. .|.+|+|+++|++ .|++|+|++++++|+||+|++++ T Consensus 240 ~~~~~f~ng~~p~gil~~~-~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~ 313 (466) T protein:vir:81 240 HQAKFFDNGATVNLVIKHN-PMADPAAVKKWADEVNSKHAGVDNAWKNLNLY-----PGADADVVGSNLQEIDFKNVRGG 313 (466) T ss_pred HHHHHHhcCCCcceEEecC-CCCCHHHHHHHHHHHHHHhcCccccccceEcC-----CCceEEEccCChhHHHHHHHHHH Confidence 9999999999999999865 468999999999999764 6779999999985 57889999999999999999999 Q ss_pred hHHHHHHHhcCCHHHcccccc-cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 270 SAADLMDAHRVPFQLMGGKPE-NIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 270 ~~~~I~~~f~VPp~~lG~~~~-~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) ++++||++|||||++||+.+. +++||+|+|++.+.|+++||.||+++||+ ||++|... .++|+.-.|++.+ T Consensus 314 ~~~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d 392 (466) T protein:vir:81 314 GETRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLRED 392 (466) T ss_pred HHHHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccC Confidence 999999999999999998754 56899999999999999999999999996 99998642 2456666666666 No 34 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=1.1e-58 Score=338.34 Aligned_cols=319 Identities=14% Similarity=0.102 Sum_probs=222.3 Q ss_pred CCCCCCCcccccccCCccceEEEECC-CceeecCcchhhheeeeee----cCchhhcccchHHhhhhhhcchhh---hhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFG-EPVPVLDKRDILDYVECIS----NGKWYEPPVSFSGLAKSLRSAVHH---SSP 72 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~-~p~~~~~~~~~~~~~~~~~----~~~~~~~pv~~~~l~~~~r~~~~~---~~~ 72 (340) |.+.++.++.. .+.+........++ -|+...+. .+..++. ....+..||++.+ ..+-..+.| ..- T Consensus 32 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~----~~~~~t~~~~~~~~~v~acV~~Ia--~~iA~lpl~~~~~~~ 104 (409) T protein:vir:83 32 MVEFRGPEEEP-EARALPWIRPTAWSGYPESWATP----SWGSAQDKLRTLIDVAWACIDLNA--SVLSSMPIYRMRNGR 104 (409) T ss_pred eeeccCCCcch-hhhhccccccccccccccccccc----CccccchhhHhhhHHHHHHHHHHH--HhhccCceEEeeCCc Confidence 54444333322 11111111111111 11111110 0111111 0112233444321 111111100 000 Q ss_pred hhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEE-EecCCceeEEEEEecCcceeecccCc--eEEEEeCCce Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQ-RHSVTGQLIKLLTSPAKYTRRGVDDS--VFWFVENFTQ 148 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i-~r~~~G~~~~L~pl~~~~~~~~~~~~--~~y~~~~~~~ 148 (340) ....... +....||++++. +|++.++.++++ ||+|+++ .|+..|++++|+|++|..|.+..+.+ .+|++.. T Consensus 105 ~~~~~~~-ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~~L~pl~p~~v~v~~~~~g~~~y~~~~--- 179 (409) T protein:vir:83 105 IIDSVAW-MSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPIRFRVVPPWLVNVELKKGARREYRIGG--- 179 (409) T ss_pred cccchhh-hcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEEEEEEECCcceEEEEcCCceEEEEEcc--- Confidence 0011111 233479999987 456676777766 9999885 58899999999999999887765544 3455532 Q ss_pred EEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHh Q lcl|Aclame:pro 149 PHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNS 228 (340) Q Consensus 149 ~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~ 228 (340) ...++||||+|.+++.+++||+||+..++.+|.++.++++|..++|+||++|+|||++++ .+++|+.+++++.|++. T Consensus 180 --~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p~gil~~~~-~ls~e~~~~~~~~~~~~ 256 (409) T protein:vir:83 180 --LNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVPLYWLGVER-RLSETEAVDLMDRWIES 256 (409) T ss_pred --ccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEeecCC-CCCHHHHHHHHHHHHHh Confidence 234689999999888899999999999999999999999999999999999999998765 79999999999999875 Q ss_pred cCcccccccccccCCccccccce-eeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccc-cccccccHHHHHHHHH Q lcl|Aclame:pro 229 KGLGNFKNLFFYSPNGKPDGIKI-VPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPE-NIGSLGDVEKVAKVFV 306 (340) Q Consensus 229 ~g~~n~~~~~vl~~~~~~~g~~~-~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~-~~~~~~n~e~~~~~f~ 306 (340) .+ +|+|+++++++ |+++ ++++++++|+||+|++++++++||++|||||++||+... ++.||+|+|++...|+ T Consensus 257 ~~-~nag~~~il~~-----g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~~~~~~~tysn~eq~~~~f~ 330 (409) T protein:vir:83 257 RS-KYAGHPALVTG-----GATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLPGATGSLTYSNIEQLFSFHD 330 (409) T ss_pred hC-CccCccceecC-----CcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCCCCccccccccHHHHHHHHH Confidence 53 58899888865 3444 689999999999999999999999999999999998664 4468999999999999 Q ss_pred HHHHHHHHHHHHH-HHHhhC--ccceeecccccCCCC Q lcl|Aclame:pro 307 RNELSPLQDRFRE-VNDWLG--MEVIRFKEYTLDNPE 340 (340) Q Consensus 307 ~~~l~P~~~~ie~-ln~~l~--~~~~rf~~~~l~~~~ 340 (340) ++||+||+++||+ ||++|. .+.++|+.-.|++.| T Consensus 331 ~~tL~P~~~~ie~~l~~~Ll~~~~~~~f~~~~llr~d 367 (409) T protein:vir:83 331 RSSLRPKATAVMAALDRWALPSPQHLELNRDDYTRPS 367 (409) T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcEEEeehhhhhccC Confidence 9999999999996 999984 345677776776666 No 35 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=7.3e-58 Score=333.83 Aligned_cols=322 Identities=15% Similarity=0.194 Sum_probs=230.4 Q ss_pred CCCC-CCCcccccccCCccc--e---EEE-ECCCcee--ecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh-- Q lcl|Aclame:pro 1 MSKR-KPRKAVAMTASAPQK--M---EAF-TFGEPVP--VLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH-- 69 (340) Q Consensus 1 m~~~-~~~~~~~~~~~~~~~--~---~~~-~f~~p~~--~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~-- 69 (340) +-+| ++.+........... + ..+ .||.+.. |... ..+ .+ ..+..||++. +..+-..+.+ T Consensus 7 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~----~al---~~-~~v~~ci~~i--a~~iA~lp~~~~ 76 (422) T protein:vir:13 7 LFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGIKLNFSVRGK----RAL---KE-NTVYVCTKIR--AESIGKLSLKIY 76 (422) T ss_pred hhhccCCccchhhhhhhccccccCcchhhhhccccCCcccchh----hhh---cc-HHHHHHHHHH--HHhhhhCceEEE Confidence 2222 222222111110000 0 001 1221110 0000 000 00 1122333321 1111111100 Q ss_pred --hhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-------- Q lcl|Aclame:pro 70 --SSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-------- 138 (340) Q Consensus 70 --~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 138 (340) ...+..-.-..+...+|||+++. +|++.++.+++++||||+++.|+..|++++|+|++|..|++..+.+ T Consensus 77 ~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~~~~ 156 (422) T protein:vir:13 77 KDKEEYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSSLSK 156 (422) T ss_pred ecCcccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceeccce Confidence 00000001111233579999986 5677888899999999999999999999999999999998765443 Q ss_pred eEEEEe-CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHH Q lcl|Aclame:pro 139 VFWFVE-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATD 217 (340) Q Consensus 139 ~~y~~~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~ 217 (340) .+|.+. .+|....+.++||||++.+.+.++++|+||+..+..+|.++.++++|..++|+||++|+|||++++ .+++++ T Consensus 157 ~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~ 235 (422) T protein:vir:13 157 VWYVVTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVG-DLDEKA 235 (422) T ss_pred EEEEEEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHH Confidence 344444 567888999999999998777899999999999999999999999999999999999999999875 689999 Q ss_pred HHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccc Q lcl|Aclame:pro 218 VESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLG 296 (340) Q Consensus 218 ~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~ 296 (340) .+++++.|++. .|.+|+++++|++ .|++|+|++.+++|+||+|.+++++++||++|||||+++|+.+ .++++ T Consensus 236 ~~~~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~--~~~~s 308 (422) T protein:vir:13 236 KKIFKKEFESMSNGLENAHSISLLP-----FGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLE--RATFN 308 (422) T ss_pred HHHHHHHHHHHhcCccccCCceecC-----CCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcc Confidence 99999999875 5668999999984 5788999999999999999999999999999999999999754 46899 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 297 DVEKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 297 n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |+|++...|+++||.||+++||+ +|.+|..+ .++|+.-.|+..| T Consensus 309 n~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d 360 (422) T protein:vir:13 309 NLTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSD 360 (422) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCC Confidence 99999999999999999999986 99988643 2566655666555 No 36 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=3.4e-58 Score=335.65 Aligned_cols=324 Identities=11% Similarity=0.066 Sum_probs=225.0 Q ss_pred CCCCCCCcccccccCCccce-------EEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh---- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM-------EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH---- 69 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~-------~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~---- 69 (340) |++.|.--....+.+..+.. ....++.+.+- .+. .++- +.+-....+-.||++.+ ..+-.-+.| T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~-~v~~-~~al~~~~V~~~i~~Ia--~~ia~lp~~~y~~ 84 (432) T protein:vir:10 10 LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISD-TGA-AVNA-DAIMRLDAVAACVKLVS--QAIAAMPLTMYMR 84 (432) T ss_pred hhhhHhhcCCccccccccccccccCcchhhhhcccccc-cCc-ccch-hhhhcchHHHHHHHHHH--HhhhhCceeEEEe Confidence 33322111111111111100 00111111000 000 0000 00000112233444321 111111100 Q ss_pred -hhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--ceEEE Q lcl|Aclame:pro 70 -SSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--SVFWF 142 (340) Q Consensus 70 -~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--~~~y~ 142 (340) ........++.+ ...+|||+++. +||+.++.+++++||||++++|+ .|++++|+|+++..|++..+. ..+|. T Consensus 85 ~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~y~ 163 (432) T protein:vir:10 85 TPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNTAYR 163 (432) T ss_pred cCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCCcEEEE Confidence 000011112222 23579999986 45667788999999999999997 599999999999998876543 34454 Q ss_pred E-eCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHH Q lcl|Aclame:pro 143 V-ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESL 221 (340) Q Consensus 143 ~-~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l 221 (340) + ..+++.++++++||||+|.++ .++++|+||+..+++++.++.++++|..++|+||++|++||++++ .+++|+++++ T Consensus 164 ~~~~~g~~~~~~~~~iih~~~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~l~~e~~~~~ 241 (432) T protein:vir:10 164 YRRTDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDR-FLTDDQYDSF 241 (432) T ss_pred EEecCceEEEEcCccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCC-CCCHHHHHHH Confidence 4 457788899999999999775 579999999999999999999999999999999999999999775 6899999999 Q ss_pred HHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccc-ccccccHHH Q lcl|Aclame:pro 222 RDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPEN-IGSLGDVEK 300 (340) Q Consensus 222 ~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~-~~~~~n~e~ 300 (340) ++.|+ |..|++++++++ .|++|+|++++++|+||+|++++++++||++|||||++||+.+.+ .++++|+|+ T Consensus 242 ~~~~~---~~~nag~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~ 313 (432) T protein:vir:10 242 AKKVS---GSVEAGRAPLLE-----GGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIES 313 (432) T ss_pred HHHHh---hhhhCCCceecC-----CCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHH Confidence 88874 567889999985 578899999999999999999999999999999999999987753 345689999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 301 VAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 301 ~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +.+.|+++||.||+++||+ ||++|..+ .++|+.-.|++.| T Consensus 314 ~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~ll~~d 360 (432) T protein:vir:10 314 QQLGFLSMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRAD 360 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccC Confidence 9999999999999999986 99988543 3566655666666 No 37 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=3.1e-58 Score=335.86 Aligned_cols=333 Identities=16% Similarity=0.144 Sum_probs=234.7 Q ss_pred CCCCCCCcccccccCCccceEEE--ECCCcee--------e-----cCcchhhheeeeeecCchhhcccchHHh------ Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAF--TFGEPVP--------V-----LDKRDILDYVECISNGKWYEPPVSFSGL------ 59 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~--~f~~p~~--------~-----~~~~~~~~~~~~~~~~~~~~~pv~~~~l------ 59 (340) |...-.|.-+..+..+.+..++| .||...+ + +...+++.|+...+. ..-..|+.++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~-~iA~lp~~v~~~~~~g~~ 79 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAA-KTVAVPYTIKVVKDTKAY 79 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHH-hhhhCceEEEeccCCccc Confidence 88875554433222222222222 2221100 0 011112222211111 112222222110 Q ss_pred -------------hhhhhcchhhhhhhhhh--hhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecC----Cce Q lcl|Aclame:pro 60 -------------AKSLRSAVHHSSPIYVK--RNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSV----TGQ 119 (340) Q Consensus 60 -------------~~~~r~~~~~~~~i~~k--~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~----~G~ 119 (340) ....+....|......+ .........|||+++. +||+.++.+++++||||++++|+. .|+ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~G~ 159 (460) T protein:vir:10 80 QQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINAGV 159 (460) T ss_pred hhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccCce Confidence 00011111111000111 1112233479999886 556677789999999999999964 478 Q ss_pred eEEEEEecCcceeecccCc----------eEEEEeCCceEEEEccccEEEecCCCCC-----CCcccccchhhhHHHHHH Q lcl|Aclame:pro 120 LIKLLTSPAKYTRRGVDDS----------VFWFVENFTQPHEFAPDTVFHLLEPDIN-----QEIYGLPEYLSALNSAWL 184 (340) Q Consensus 120 ~~~L~pl~~~~~~~~~~~~----------~~y~~~~~~~~~~~~~~dvih~r~~~~~-----~~~~G~sp~~~a~~~i~~ 184 (340) +++|+|++|..+++..+.+ .+|.+..++....|+++||||||.+++. ++++|+||+..++++|.+ T Consensus 160 ~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~ 239 (460) T protein:vir:10 160 PSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNINS 239 (460) T ss_pred eEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHHHH Confidence 9999999999998876543 2345566788899999999999987665 478999999999999999 Q ss_pred HHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHH Q lcl|Aclame:pro 185 NESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDF 263 (340) Q Consensus 185 ~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf 263 (340) +.++++|..++|+||+.|++|+. +++.+++++.+++++.|++. .|.+|+|++++++ +|++|+|++++++|+|| T Consensus 240 ~~~~~~~~~~~f~ng~~~~~i~~-~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~ 313 (460) T protein:vir:10 240 QNSTIDNNVKTMQNGGVFGFIHG-GSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGAS-----GEIAFTKISLNTDELKP 313 (460) T ss_pred HHHHHHHHHHHHhcCCCcceeee-cCCCCCHHHHHHHHHHHHHHhcCccccCCceecC-----CCceEEEccCChhHHHH Confidence 99999999999999999999887 45679999999999999875 5678999999984 57889999999999999 Q ss_pred HHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccee----ecccccCC Q lcl|Aclame:pro 264 FNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIR----FKEYTLDN 338 (340) Q Consensus 264 ~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~r----f~~~~l~~ 338 (340) +|++++++++||++|||||++||+.+.++++++|+|++...|+++||.||++.||+ ||.+|..+..+ +-+|+++. T Consensus 314 ~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~ 393 (460) T protein:vir:10 314 FDYLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISE 393 (460) T ss_pred HHHHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecch Confidence 99999999999999999999999988777789999999999999999999999985 99999764321 11233333 Q ss_pred CC Q lcl|Aclame:pro 339 PE 340 (340) Q Consensus 339 ~~ 340 (340) .+ T Consensus 394 l~ 395 (460) T protein:vir:10 394 LP 395 (460) T ss_pred hh Confidence 32 No 38 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=3.3e-57 Score=330.27 Aligned_cols=335 Identities=12% Similarity=0.089 Sum_probs=226.6 Q ss_pred CCCC---CCCcccccccCCccceEEEECCC------ceeecCcchhhheeeeeecCchhhcccchHHh--hhh---h--- Q lcl|Aclame:pro 1 MSKR---KPRKAVAMTASAPQKMEAFTFGE------PVPVLDKRDILDYVECISNGKWYEPPVSFSGL--AKS---L--- 63 (340) Q Consensus 1 m~~~---~~~~~~~~~~~~~~~~~~~~f~~------p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l--~~~---~--- 63 (340) |-+| ..+.......+..+...+.-=|+ |.+.....++-+++.....+.++..||+..+- +.+ . T Consensus 38 ~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~ 117 (576) T protein:vir:96 38 IEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYN 117 (576) T ss_pred hhhhhhhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhc Confidence 2111 11111111111111111111111 11111111222333333344555555554321 110 0 Q ss_pred ----------hcc----hhhhhh-hhhhhhhHHH-hhhccCC--CcHHHHHHHHHHHHHhCCeeEEEEec--CCceeEEE Q lcl|Aclame:pro 64 ----------RSA----VHHSSP-IYVKRNVLAS-TYIPHPL--LSRQDFSRFALDYLVFGNAFLEQRHS--VTGQLIKL 123 (340) Q Consensus 64 ----------r~~----~~~~~~-i~~k~n~~~~-~~~pnp~--~~~~~~~~~~~~~ll~Gnay~~i~r~--~~G~~~~L 123 (340) +.. ..|... +....+.+.. ...|||. +..+|++.++.+++++||+|++++++ +.|++++| T Consensus 118 ~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g~~~~L 197 (576) T protein:vir:96 118 ERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNATTMDKF 197 (576) T ss_pred cccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCCCceEEE Confidence 000 000000 0000011111 0124443 34578899999999999999998854 56789999 Q ss_pred EEecCcceeecccCce--------EEEEeCCceEEEEccccEEEec-CCC--CCCCcccccchhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 124 LTSPAKYTRRGVDDSV--------FWFVENFTQPHEFAPDTVFHLL-EPD--INQEIYGLPEYLSALNSAWLNESATLFR 192 (340) Q Consensus 124 ~pl~~~~~~~~~~~~~--------~y~~~~~~~~~~~~~~dvih~r-~~~--~~~~~~G~sp~~~a~~~i~~~~aa~~~~ 192 (340) +|++|.+|++..+.+. |+++..++....++++||||++ .+. ...+.||+||+.+++.+|.++.++++|+ T Consensus 198 ~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~ 277 (576) T protein:vir:96 198 IAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIAYNNTETFN 277 (576) T ss_pred EEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHHHHHHHHHHHHH Confidence 9999999988765432 3444556677889999998765 333 2347899999999999999999999999 Q ss_pred HHHHHccCCCceEEEeCC-CCcCHHHHHHHHHHHHH-hcCccccccc-ccccCCccccccceeeccchhhHHHHHHHHHh Q lcl|Aclame:pro 193 RKYYQNGAHAGYIMYVTD-PAQSATDVESLRDAMRN-SKGLGNFKNL-FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKA 269 (340) Q Consensus 193 ~~~f~NG~~p~gil~~~~-~~~~~e~~~~l~~~~~~-~~g~~n~~~~-~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~ 269 (340) .++|+||++|+|||++++ ..+++++++++++.|++ +.|.+|+|++ +|++ +|++|+|++++++|+||+|.+++ T Consensus 278 ~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~-----~G~~~~~ls~~~~d~qfle~~~~ 352 (576) T protein:vir:96 278 DRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMA-----DDIKFVNMTPTANDMQFEKWLTY 352 (576) T ss_pred HHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecC-----CCceEEeccCChhhHHHHHHHHH Confidence 999999999999999875 46899999999999987 4677899995 6663 57899999999999999999999 Q ss_pred hHHHHHHHhcCCHHHcccccccc---------cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeecccccCCC Q lcl|Aclame:pro 270 SAADLMDAHRVPFQLMGGKPENI---------GSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFKEYTLDNP 339 (340) Q Consensus 270 ~~~~I~~~f~VPp~~lG~~~~~~---------~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~ 339 (340) ++++||++|||||++||+.+..+ .+++|+|++.+.|+++||+||+++||+ ||++|..+......++|++. T Consensus 353 ~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~f~r~ 432 (576) T protein:vir:96 353 LINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYSDKYVFQFVGG 432 (576) T ss_pred hHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhccCceEEEeccC Confidence 99999999999999999876432 267999999999999999999999996 99999766433334556666 Q ss_pred C Q lcl|Aclame:pro 340 E 340 (340) Q Consensus 340 ~ 340 (340) + T Consensus 433 d 433 (576) T protein:vir:96 433 D 433 (576) T ss_pred C Confidence 6 No 39 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=2.2e-57 Score=331.22 Aligned_cols=330 Identities=11% Similarity=0.071 Sum_probs=226.7 Q ss_pred CCCCCCCc---------------ccccccCCccceEE--EECCCceeecCcc------hhhheeeeeecCchhhcccchH Q lcl|Aclame:pro 1 MSKRKPRK---------------AVAMTASAPQKMEA--FTFGEPVPVLDKR------DILDYVECISNGKWYEPPVSFS 57 (340) Q Consensus 1 m~~~~~~~---------------~~~~~~~~~~~~~~--~~f~~p~~~~~~~------~~~~~~~~~~~~~~~~~pv~~~ 57 (340) |+-||... ..+..++.-.+... +..++|+...... ++-+++..+.+..++..+|+.. T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~t~ 92 (535) T protein:vir:10 13 LSNKKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQAIIRTR 92 (535) T ss_pred hhhhhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhccChhHHHHHHHH Confidence 66665210 00111111111112 2234443111110 1112233223333443433321 Q ss_pred Hhhhhhhcchhhhhhh------------------------hhhhhhHH---HhhhccCCCcHH-----HHHHHHHHHHHh Q lcl|Aclame:pro 58 GLAKSLRSAVHHSSPI------------------------YVKRNVLA---STYIPHPLLSRQ-----DFSRFALDYLVF 105 (340) Q Consensus 58 ~l~~~~r~~~~~~~~i------------------------~~k~n~~~---~~~~pnp~~~~~-----~~~~~~~~~ll~ 105 (340) . +..+. .+|+ ..+.++.+ ....||++++.. |+++++.+++++ T Consensus 93 ~-----~~va~-~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~ 166 (535) T protein:vir:10 93 T-----NQVLT-YSNPSRYNRNGVGFKVELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQ 166 (535) T ss_pred H-----HHHHH-HHHHHHHhcccCcceeEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhh Confidence 1 00000 0000 01112222 234799988753 445666776655 Q ss_pred -CCeeEEEEecCCceeEEEEEecCcceeeccc------CceEEEEeCCceEEEEccccEEEecCCCC---CCCcccccch Q lcl|Aclame:pro 106 -GNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD------DSVFWFVENFTQPHEFAPDTVFHLLEPDI---NQEIYGLPEY 175 (340) Q Consensus 106 -Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~------~~~~y~~~~~~~~~~~~~~dvih~r~~~~---~~~~~G~sp~ 175 (340) ||+|++++|+..|+|++|+|++|.+|++..+ ...||++.+++....|+++||||++.+.. .+++||+||+ T Consensus 167 ~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi 246 (535) T protein:vir:10 167 DQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKFEQFVSETKSVKFSERNLTFINYWNLSDTDRRGYGYSPV 246 (535) T ss_pred CCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEEEEEecCceeEEECcccEEEEeccCCCCcccccccccHH Confidence 5889999999999999999999999987543 23567777788888999999999997543 4578999999 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC---CCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccce Q lcl|Aclame:pro 176 LSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD---PAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKI 251 (340) Q Consensus 176 ~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~---~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~ 251 (340) .+++.+|.++.++++|+.++|+||++|+|||++++ +.+++++++++++.|++. .|.+|+++++|+.. .|++| T Consensus 247 ~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~----~g~~~ 322 (535) T protein:vir:10 247 EASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAA----KDAKF 322 (535) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccC----CCceE Confidence 99999999999999999999999999999999874 468999999999999874 57789999877753 47899 Q ss_pred eeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccc----------cccccHHHHHHHHHHHHHHHHHHHHHH-H Q lcl|Aclame:pro 252 VPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENI----------GSLGDVEKVAKVFVRNELSPLQDRFRE-V 320 (340) Q Consensus 252 ~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~----------~~~~n~e~~~~~f~~~~l~P~~~~ie~-l 320 (340) +|++++++|+||+|++++++++||++|||||++||+.+..+ .+.+++|++...|++.||+||+++||+ | T Consensus 323 ~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~l 402 (535) T protein:vir:10 323 VNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVI 402 (535) T ss_pred EecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999866421 223457888889999999999999996 9 Q ss_pred HHhhCccceeecccccCC---CC Q lcl|Aclame:pro 321 NDWLGMEVIRFKEYTLDN---PE 340 (340) Q Consensus 321 n~~l~~~~~rf~~~~l~~---~~ 340 (340) |++|..+.-..-+|+++. .+ T Consensus 403 n~~Ll~~~~~~~~f~f~~l~~~d 425 (535) T protein:vir:10 403 NDKIMRYVDTDYRFSFTLGDAQD 425 (535) T ss_pred hhhcccccCCeEEEEeccccccC Confidence 999876532211233333 22 No 40 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=7.9e-58 Score=333.64 Aligned_cols=315 Identities=13% Similarity=0.095 Sum_probs=228.3 Q ss_pred CCCCCCCcccccccCCccceEEEECCCc-------eeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcch Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEP-------VPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAV 67 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p-------~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~ 67 (340) +.|++++. .+.....+.+..+.+ +.|... ..+. ..-+..||++.+ ++++ ++.+. T Consensus 6 ~~~~~~~~-----~s~~~~w~~~~~~~~~~~~~~g~~vt~~----~al~----~~~v~~~i~~Ia~~iA~lp~~~~~~~~ 72 (421) T protein:vir:10 6 MFEGKKRS-----VSGGGFWEAMLGGVRSSHSKAGVMITPE----TALA----LSAVRACVTLLAESVAQLPVELYRRDK 72 (421) T ss_pred hhcccccc-----cCcchhhHHHhhhhccCcccCCceechH----Hhhc----cHHHHHHHHHHHHhhccCceEEEEEcC Confidence 33333322 111211111111111 111110 0000 111223333321 1111 11100 Q ss_pred hhhhhhhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc--CceEE Q lcl|Aclame:pro 68 HHSSPIYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD--DSVFW 141 (340) Q Consensus 68 ~~~~~i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~--~~~~y 141 (340) . +. .....++. +...+|||+++. +||+.++.+++++||||++++|+..|+|++|+|++|..|.+..+ +..+| T Consensus 73 ~-g~-~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y 150 (421) T protein:vir:10 73 N-GG-RQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMPYY 150 (421) T ss_pred C-Cc-eeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceEEE Confidence 0 00 00111222 233579999986 56678888999999999999999999999999999999887654 44566 Q ss_pred EEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC---CCcCHHHH Q lcl|Aclame:pro 142 FVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD---PAQSATDV 218 (340) Q Consensus 142 ~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~---~~~~~e~~ 218 (340) ++...++ .++++||||++.++ .++++|+||+..++.++.++.++++|..++|+||++|+|||+++. +.+++|+. T Consensus 151 ~~~~~g~--~~~~~eiih~~~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~ 227 (421) T protein:vir:10 151 EIPEIGE--TLPMRMMHHVKVFS-LDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKI 227 (421) T ss_pred EEcCCCc--EEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHH Confidence 6665554 68899999999876 579999999999999999999999999999999999999999764 34599999 Q ss_pred HHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccccccc Q lcl|Aclame:pro 219 ESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGD 297 (340) Q Consensus 219 ~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n 297 (340) +++++.|++. .|.+|++++++++ .|++|++++.+++|+||+|++++++++||++|||||++||+.. .++++| T Consensus 228 ~~~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~sn 300 (421) T protein:vir:10 228 DQLLAKWTDRYSGINNMFSVALLQ-----EGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLA--KATNNN 300 (421) T ss_pred HHHHHHHHHHhcCccccCcceecC-----CCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCc--CCcccc Confidence 9999999875 5678999999984 5789999999999999999999999999999999999999865 468999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 298 VEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 298 ~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +|++.+.|+++||.||+.+||+ ||.+|..+ .++|+.-.|++.| T Consensus 301 ~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d 350 (421) T protein:vir:10 301 IEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSERRDLYIEFNVSGLLRGD 350 (421) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccC Confidence 9999999999999999999985 99998643 3566665665555 No 41 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=7.1e-58 Score=333.90 Aligned_cols=322 Identities=14% Similarity=0.212 Sum_probs=232.7 Q ss_pred CCCCC------CCccccccc-CCc-cc-eEEEECCCc-eeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh-h Q lcl|Aclame:pro 1 MSKRK------PRKAVAMTA-SAP-QK-MEAFTFGEP-VPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH-H 69 (340) Q Consensus 1 m~~~~------~~~~~~~~~-~~~-~~-~~~~~f~~p-~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~-~ 69 (340) |+.=+ +|+...... +.. .. ...+....+ ..| +.... .....+..||++. +..+-..+. + T Consensus 1 M~~~~~~f~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~v-~~~~a-------l~~~~v~~~i~~i--a~~ia~l~~~~ 70 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGISPSTISV-KGKNA-------LKVATVFACIKIL--SESVSKLPLKI 70 (429) T ss_pred CchhhhhhcccccCcccccccCCChHHHHHHhcCCCCccee-chhhh-------hccHHHHHHHHHH--HHhhccCceEE Confidence 54432 121111111 000 00 000000000 000 00000 0111223334332 111111110 0 Q ss_pred ----hhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---- Q lcl|Aclame:pro 70 ----SSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---- 137 (340) Q Consensus 70 ----~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---- 137 (340) ........++.+ ...+|||+++. +|++.++.+++++||+|+++.|+..|++++|+|+++..|.+..+. T Consensus 71 ~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~ 150 (429) T protein:vir:10 71 YQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLL 150 (429) T ss_pred EEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccc Confidence 000011112222 22479999986 567788899999999999999999999999999999998876543 Q ss_pred ----ceEEEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCc Q lcl|Aclame:pro 138 ----SVFWFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQ 213 (340) Q Consensus 138 ----~~~y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~ 213 (340) ..+|.+..++....|+++||||+|...+.++++|+||+..++.++.++.++++|..++|+||++|++||++++ .+ T Consensus 151 ~~~~~~~~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~-~l 229 (429) T protein:vir:10 151 NSKTKMWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DL 229 (429) T ss_pred cccceEEEEEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CC Confidence 2356777788888999999999998778899999999999999999999999999999999999999999875 68 Q ss_pred CHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccc Q lcl|Aclame:pro 214 SATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENI 292 (340) Q Consensus 214 ~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~ 292 (340) ++++.+++++.|++. .|..|+++++|++ .|++|+|++.++.|+||+|++++++++||++|||||.+||+.+ + T Consensus 230 ~~e~~~~~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~--~ 302 (429) T protein:vir:10 230 NEDAKKVFRENFESMSSGLQNSHRIALMP-----VGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLS--K 302 (429) T ss_pred CHHHHHHHHHHHHHHhccccccCceeecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--C Confidence 999999999999875 5668999999984 5788999999999999999999999999999999999999755 4 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 293 GSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 293 ~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) ++++|+|++...|++++|+||++.||+ +|++|..+ .++|+.-.|++.| T Consensus 303 ~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d 358 (429) T protein:vir:10 303 ATLNNIEQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRAD 358 (429) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCC Confidence 689999999999999999999999986 99988543 3566655666666 No 42 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=1.2e-57 Score=332.57 Aligned_cols=324 Identities=14% Similarity=0.162 Sum_probs=229.4 Q ss_pred CCCCC---CCcccccccCCccceEEEECCCceeecCcchhh--heeeeeecCchhhcccchHH--hhhh----hhcchhh Q lcl|Aclame:pro 1 MSKRK---PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDIL--DYVECISNGKWYEPPVSFSG--LAKS----LRSAVHH 69 (340) Q Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~--~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~ 69 (340) |.-=+ +|.+....+........+.. +.+...+..+. .++. ...+..||++.+ ++++ .+.+..- T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~~~~~--~~~~~~g~~v~~~~al~----~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~ 74 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELADAIGL--SYDTYTGKQISSQRAMR----LTAVFSCVRVLAESVGMLPCNLYHLNGSL 74 (414) T ss_pred CchhhhhhccCccCcccchhhHhHhhcc--CccccCCceechhhhhc----cHHHHHHHHHHHHHhccCceEEEEecCCc Confidence 43311 11111111111111112211 11111111110 0111 112334444321 1111 1111100 Q ss_pred hhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc--CceEEEEe-C Q lcl|Aclame:pro 70 SSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD--DSVFWFVE-N 145 (340) Q Consensus 70 ~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~--~~~~y~~~-~ 145 (340) ........-..+...+|||+++. +|++.++.+++++||||++++|+ .|++++|+|++|..|.+..+ +..+|.+. . T Consensus 75 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~ 153 (414) T protein:vir:44 75 KQRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWEPVYQVTFP 153 (414) T ss_pred eeecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCcEEEEEEec Confidence 00000011112233579999886 55677788999999999999987 59999999999998876544 34445444 5 Q ss_pred CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 146 FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAM 225 (340) Q Consensus 146 ~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~ 225 (340) ++....|+++||||++.++ .++++|+||+..+..++.++.++++|..++|+||++|+|||++++ .+++|+.+++++.| T Consensus 154 ~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~~~~ 231 (414) T protein:vir:44 154 DGSTDVLSQEDIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQ-TLSDQAYERLKKDF 231 (414) T ss_pred CceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCCHHHHHHHHHHH Confidence 6677889999999999875 588999999999999999999999999999999999999999775 68999999999999 Q ss_pred HHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH Q lcl|Aclame:pro 226 RNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV 304 (340) Q Consensus 226 ~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~ 304 (340) ++. .|.+|+++++++. .|++|+|++.+++|+||+|.+++++++||++|||||++||+.+ +++++|+|++.+. T Consensus 232 ~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~--~~t~~n~e~~~~~ 304 (414) T protein:vir:44 232 EERHTGLGNAHRPMILE-----MGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTD--RATFNNIEELGLG 304 (414) T ss_pred HHHhcCccccCcceecC-----CCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccHHHHHHH Confidence 764 6778999999984 5788999999999999999999999999999999999999854 4789999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) |+++||+||+++||+ ||.+|..+ .++|+.-.|++.| T Consensus 305 ~~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d 347 (414) T protein:vir:44 305 FINYSLVPYLTRIEQRINTGLVRKSKQGVFYAKFNAGALLRGD 347 (414) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccCceEEEEechhhhccC Confidence 999999999999986 99998644 3667766676666 No 43 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=1.1e-57 Score=332.82 Aligned_cols=325 Identities=17% Similarity=0.186 Sum_probs=226.9 Q ss_pred CCCCC------CCcccccccCCc---cceEEEECCCc----eeecCcchhhheeeeeecCchhhcccchHH--hhhh--- Q lcl|Aclame:pro 1 MSKRK------PRKAVAMTASAP---QKMEAFTFGEP----VPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS--- 62 (340) Q Consensus 1 m~~~~------~~~~~~~~~~~~---~~~~~~~f~~p----~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~--- 62 (340) |..-+ +.++........ .....+.|+.+ ++|... ..+. + .-+..||++.+ ++++ T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~----~al~---~-~~V~~~v~~Ia~~iA~lp~~ 72 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPH----DALQ---V-SAVFASVRLLSETIATLPLS 72 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechH----Hhhc---c-HHHHHHHHHHHHhhccCceE Confidence 66321 111111111100 00011122211 111100 0000 0 01222333211 1111 Q ss_pred -hhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc--- Q lcl|Aclame:pro 63 -LRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--- 138 (340) Q Consensus 63 -~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~--- 138 (340) ++........+...........+||.+++.+||+.++.+++++||||+++.++ .|++++|+|++|..|++..+.. T Consensus 73 ~~~~~~~~~~~~~~~~l~~~ln~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~ 151 (457) T protein:vir:13 73 TYSKRGGSRKEIVTPEWLDYPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDPTKIHVHMVMVDGL 151 (457) T ss_pred EEEecCCcccccccchHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEccCceEEEEecCCCc Confidence 11111000011111111112234555666788999999999999999999887 5999999999999887654321 Q ss_pred ---e--EEEEeCCceE---EEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC Q lcl|Aclame:pro 139 ---V--FWFVENFTQP---HEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD 210 (340) Q Consensus 139 ---~--~y~~~~~~~~---~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~ 210 (340) . .|.+..++.. ..|+++||||++.+++.++++|+||+..++.+|.++.++++|..++|+||++|++||++++ T Consensus 152 ~~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~ 231 (457) T protein:vir:13 152 RRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPG 231 (457) T ss_pred cceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCC Confidence 1 2444444433 4588999999999988777999999999999999999999999999999999999999875 Q ss_pred CCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccc Q lcl|Aclame:pro 211 PAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKP 289 (340) Q Consensus 211 ~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~ 289 (340) .+++++++++++.|++. .|.+|+++++|++ .|++|+|++++++|+||+|++++++++||++|||||++||+.. T Consensus 232 -~ls~e~~~~~~~~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~ 305 (457) T protein:vir:13 232 -TMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT 305 (457) T ss_pred -CCCHHHHHHHHHHHHHHhcCccccCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC Confidence 78999999999999875 5678999999985 5788999999999999999999999999999999999999988 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 290 ENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 290 ~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) ..+.+++|+|++...|+++||.||+++||+ ||.+|..+ .++|+.-.|++.| T Consensus 306 ~~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D 363 (457) T protein:vir:13 306 NSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGA 363 (457) T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccC Confidence 766677999999999999999999999996 99999654 2556655565555 No 44 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=1.2e-57 Score=332.64 Aligned_cols=321 Identities=13% Similarity=0.203 Sum_probs=230.5 Q ss_pred CCCCCCCcccccccCCccceEEEECC--Cce--eecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh-h----hh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFG--EPV--PVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH-H----SS 71 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~--~p~--~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~-~----~~ 71 (340) +.-+|+........+..... .+.|. .+. .| +.... + ....+..||++. +..+...+. + .. T Consensus 11 ~~~~~r~~~~~~~~~~~~~~-~~~~~g~~~~~~~v-~~~~a---l----~~~~v~~~i~~i--a~~ia~lp~~~~~~~~~ 79 (432) T protein:vir:10 11 FNFEKRQTSQVIELNKDDEK-LLEWLGISPSTISV-KGKNA---L----KVATVFACIKIL--SESVSKLPLKIYQEDEY 79 (432) T ss_pred cCccccCcccccccCCchHH-HHHHhCCCcCcccc-chhhh---h----ccHHHHHHHHHH--HHhhccCceEEEEecCC Confidence 22122211111000100000 00010 000 00 00000 0 001122233321 111111110 0 00 Q ss_pred hhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--------ce Q lcl|Aclame:pro 72 PIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--------SV 139 (340) Q Consensus 72 ~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--------~~ 139 (340) ......++.+ ...+|||+++. +|++.++.+++++||+|+++.|+..|++++|+|++|..|++..+. .. T Consensus 80 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~ 159 (432) T protein:vir:10 80 GIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKM 159 (432) T ss_pred ceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceE Confidence 0001112222 22479999986 566788889999999999999999999999999999998875542 24 Q ss_pred EEEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHH Q lcl|Aclame:pro 140 FWFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVE 219 (340) Q Consensus 140 ~y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~ 219 (340) +|.+..++....|+++||||+|.+.+.++++|+||+..++.++.++.++++|..++|+||++|+|||++++ .+++++.+ T Consensus 160 ~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~ 238 (432) T protein:vir:10 160 WYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DLNEDAKK 238 (432) T ss_pred EEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCHHHHH Confidence 67777888889999999999998778899999999999999999999999999999999999999999765 68999999 Q ss_pred HHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccH Q lcl|Aclame:pro 220 SLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDV 298 (340) Q Consensus 220 ~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~ 298 (340) ++++.|++. .|.+|++++++++ .|++|+|++++++|+||+|.+++++++||++|||||++||+.+ .++++|+ T Consensus 239 ~~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~--~~~~s~~ 311 (432) T protein:vir:10 239 VFRENFESMSSGLQNSHRIALMP-----VGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLS--KATLNNI 311 (432) T ss_pred HHHHHHHHHhcccccCCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccH Confidence 999999875 5668999999985 5788999999999999999999999999999999999999754 4689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 299 EKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 299 e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |++...|+++||+||+..||+ ||++|..+ .++|+.-.|++.| T Consensus 312 e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d 361 (432) T protein:vir:10 312 EQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRAD 361 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCC Confidence 999999999999999999986 99988543 2566665666666 No 45 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=1.2e-57 Score=332.64 Aligned_cols=321 Identities=13% Similarity=0.203 Sum_probs=230.5 Q ss_pred CCCCCCCcccccccCCccceEEEECC--Cce--eecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh-h----hh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFG--EPV--PVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH-H----SS 71 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~--~p~--~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~-~----~~ 71 (340) +.-+|+........+..... .+.|. .+. .| +.... + ....+..||++. +..+...+. + .. T Consensus 11 ~~~~~r~~~~~~~~~~~~~~-~~~~~g~~~~~~~v-~~~~a---l----~~~~v~~~i~~i--a~~ia~lp~~~~~~~~~ 79 (432) T protein:vir:10 11 FNFEKRQTSQVIELNKDDEK-LLEWLGISPSTISV-KGKNA---L----KVATVFACIKIL--SESVSKLPLKIYQEDEY 79 (432) T ss_pred cCccccCcccccccCCchHH-HHHHhCCCcCcccc-chhhh---h----ccHHHHHHHHHH--HHhhccCceEEEEecCC Confidence 22122211111000100000 00010 000 00 00000 0 001122233321 111111110 0 00 Q ss_pred hhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--------ce Q lcl|Aclame:pro 72 PIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--------SV 139 (340) Q Consensus 72 ~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--------~~ 139 (340) ......++.+ ...+|||+++. +|++.++.+++++||+|+++.|+..|++++|+|++|..|++..+. .. T Consensus 80 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~ 159 (432) T protein:vir:10 80 GIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKM 159 (432) T ss_pred ceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceE Confidence 0001112222 22479999986 566788889999999999999999999999999999998875542 24 Q ss_pred EEEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHH Q lcl|Aclame:pro 140 FWFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVE 219 (340) Q Consensus 140 ~y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~ 219 (340) +|.+..++....|+++||||+|.+.+.++++|+||+..++.++.++.++++|..++|+||++|+|||++++ .+++++.+ T Consensus 160 ~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~ 238 (432) T protein:vir:10 160 WYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DLNEDAKK 238 (432) T ss_pred EEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCHHHHH Confidence 67777888889999999999998778899999999999999999999999999999999999999999765 68999999 Q ss_pred HHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccH Q lcl|Aclame:pro 220 SLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDV 298 (340) Q Consensus 220 ~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~ 298 (340) ++++.|++. .|.+|++++++++ .|++|+|++++++|+||+|.+++++++||++|||||++||+.+ .++++|+ T Consensus 239 ~~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~--~~~~s~~ 311 (432) T protein:vir:10 239 VFRENFESMSSGLQNSHRIALMP-----VGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLS--KATLNNI 311 (432) T ss_pred HHHHHHHHHhcccccCCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccH Confidence 999999875 5668999999985 5788999999999999999999999999999999999999754 4689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 299 EKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 299 e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |++...|+++||+||+..||+ ||++|..+ .++|+.-.|++.| T Consensus 312 e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d 361 (432) T protein:vir:10 312 EQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRAD 361 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCC Confidence 999999999999999999986 99988543 2566665666666 No 46 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=1.2e-57 Score=332.64 Aligned_cols=321 Identities=13% Similarity=0.203 Sum_probs=230.5 Q ss_pred CCCCCCCcccccccCCccceEEEECC--Cce--eecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh-h----hh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFG--EPV--PVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH-H----SS 71 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~--~p~--~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~-~----~~ 71 (340) +.-+|+........+..... .+.|. .+. .| +.... + ....+..||++. +..+...+. + .. T Consensus 11 ~~~~~r~~~~~~~~~~~~~~-~~~~~g~~~~~~~v-~~~~a---l----~~~~v~~~i~~i--a~~ia~lp~~~~~~~~~ 79 (432) T protein:vir:10 11 FNFEKRQTSQVIELNKDDEK-LLEWLGISPSTISV-KGKNA---L----KVATVFACIKIL--SESVSKLPLKIYQEDEY 79 (432) T ss_pred cCccccCcccccccCCchHH-HHHHhCCCcCcccc-chhhh---h----ccHHHHHHHHHH--HHhhccCceEEEEecCC Confidence 22122211111000100000 00010 000 00 00000 0 001122233321 111111110 0 00 Q ss_pred hhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--------ce Q lcl|Aclame:pro 72 PIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--------SV 139 (340) Q Consensus 72 ~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--------~~ 139 (340) ......++.+ ...+|||+++. +|++.++.+++++||+|+++.|+..|++++|+|++|..|++..+. .. T Consensus 80 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~ 159 (432) T protein:vir:10 80 GIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKM 159 (432) T ss_pred ceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceE Confidence 0001112222 22479999986 566788889999999999999999999999999999998875542 24 Q ss_pred EEEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHH Q lcl|Aclame:pro 140 FWFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVE 219 (340) Q Consensus 140 ~y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~ 219 (340) +|.+..++....|+++||||+|.+.+.++++|+||+..++.++.++.++++|..++|+||++|+|||++++ .+++++.+ T Consensus 160 ~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~ 238 (432) T protein:vir:10 160 WYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVG-DLNEDAKK 238 (432) T ss_pred EEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCC-CCCHHHHH Confidence 67777888889999999999998778899999999999999999999999999999999999999999765 68999999 Q ss_pred HHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccH Q lcl|Aclame:pro 220 SLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDV 298 (340) Q Consensus 220 ~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~ 298 (340) ++++.|++. .|.+|++++++++ .|++|+|++++++|+||+|.+++++++||++|||||++||+.+ .++++|+ T Consensus 239 ~~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~--~~~~s~~ 311 (432) T protein:vir:10 239 VFRENFESMSSGLQNSHRIALMP-----VGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLS--KATLNNI 311 (432) T ss_pred HHHHHHHHHhcccccCCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccH Confidence 999999875 5668999999985 5788999999999999999999999999999999999999754 4689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 299 EKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 299 e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |++...|+++||+||+..||+ ||++|..+ .++|+.-.|++.| T Consensus 312 e~~~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d 361 (432) T protein:vir:10 312 EQQQQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRAD 361 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCC Confidence 999999999999999999986 99988543 2566665666666 No 47 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=4.4e-57 Score=329.52 Aligned_cols=320 Identities=11% Similarity=0.061 Sum_probs=230.1 Q ss_pred CCCCC---CCcccccccCCccceEEEECCCceeecCcchh--hheeeeeecCchhhcccchHH--hhhh----hhcchhh Q lcl|Aclame:pro 1 MSKRK---PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDI--LDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHH 69 (340) Q Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~--~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~ 69 (340) |.-.+ +++..+... ...+.....+.+ ...+..+ -..+. ..-+..||++.+ ++++ ++.+.. T Consensus 1 m~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~g~~v~~~~al~----~~~v~~~i~~ia~~ia~lp~~~~~~~~~- 71 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVN--WQVVPGGMRSSS--SQAGVIITPETALA----LSAVRACVTLLAESVAQLPCVLYRRTEN- 71 (419) T ss_pred CcchhhhccCCcccccc--cccccccccccc--ccCCceechHHhhc----cHHHHHHHHHHHHhhccCceEEEEEcCC- Confidence 65443 222211111 110000000000 0000000 00011 011334444321 1111 111110 Q ss_pred hhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc--eEEEE Q lcl|Aclame:pro 70 SSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--VFWFV 143 (340) Q Consensus 70 ~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~--~~y~~ 143 (340) .......++.+ ...+|||+++. +|++.++.+++++||||++++|+..|++++|+|++|..|++..+.+ .||.+ T Consensus 72 -g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~ 150 (419) T protein:vir:57 72 -GGREIAFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMPYYDI 150 (419) T ss_pred -CceeccccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceEEEEE Confidence 01111123322 23479999886 5567888899999999999999999999999999999998876544 45666 Q ss_pred eCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC---CCCcCHHHHHH Q lcl|Aclame:pro 144 ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT---DPAQSATDVES 220 (340) Q Consensus 144 ~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~---~~~~~~e~~~~ 220 (340) ...+ ..+++++|||+|.++ .+++||+||+..++.+|.++.++++|+.++|+||++|+|||+++ ++.+++++.++ T Consensus 151 ~~~~--~~~~~~~vih~r~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~ 227 (419) T protein:vir:57 151 PSIG--EILPMRMVHHIKSFS-LDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDA 227 (419) T ss_pred cCCc--eEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHH Confidence 5554 468899999999875 67899999999999999999999999999999999999999985 34679999999 Q ss_pred HHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHH Q lcl|Aclame:pro 221 LRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVE 299 (340) Q Consensus 221 l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e 299 (340) +++.|++. .|.+|++++++++ .|++|+|++.+++|+||+|++++++++||++|||||.+||+.. .++++|+| T Consensus 228 ~~~~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~sn~e 300 (419) T protein:vir:57 228 ILAKWTERYGGVRNAFSVGMLQ-----EGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQ--KSTNNNIE 300 (419) T ss_pred HHHHHHHHhccccccccceecC-----CCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCccccHH Confidence 99999765 5668999999985 5789999999999999999999999999999999999999754 46899999 Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 300 KVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 300 ~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) ++.+.|+++||+||++.||+ ||++|..+ .++|+.-.|+..| T Consensus 301 ~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~i~fd~~~ll~~d 348 (419) T protein:vir:57 301 HQGLQYVIYTMLAILKRHESAMMRDLLLPSERRDFYIEFNVSSLLRGD 348 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccC Confidence 99999999999999999986 99988543 3667766666666 No 48 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=6.2e-57 Score=328.75 Aligned_cols=300 Identities=14% Similarity=0.180 Sum_probs=224.5 Q ss_pred eeeeeecCchhhcccchHH--hhhh----hhcchhhh----hhhhhhhhhHHHhhhccCCCc---------HHHHHHHHH Q lcl|Aclame:pro 40 YVECISNGKWYEPPVSFSG--LAKS----LRSAVHHS----SPIYVKRNVLASTYIPHPLLS---------RQDFSRFAL 100 (340) Q Consensus 40 ~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~----~~i~~k~n~~~~~~~pnp~~~---------~~~~~~~~~ 100 (340) .-.+..++.++..||++.+ ++.+ ......+. .....+....+....||+.++ .++|+.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 1112223444444444321 1100 00000000 000011111122234666543 356778889 Q ss_pred HHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEe--------------------------------CCce Q lcl|Aclame:pro 101 DYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVE--------------------------------NFTQ 148 (340) Q Consensus 101 ~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~--------------------------------~~~~ 148 (340) +++++||||++++|+..|++++|+|+++.+|++..+...|+... ..+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 99999999999999999999999999999998876654322111 1244 Q ss_pred EEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHh Q lcl|Aclame:pro 149 PHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNS 228 (340) Q Consensus 149 ~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~ 228 (340) .+.++++||||+|.+++.+++||+||+.+++.++.++.++++|+.++|+||++|+|||+++++.+++++++++++.|++. T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~ 240 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDN 240 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhh Confidence 56789999999999998999999999999999999999999999999999999999999998889999999999999763 Q ss_pred c------------CcccccccccccCCcc--ccccceeeccc-hhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccc Q lcl|Aclame:pro 229 K------------GLGNFKNLFFYSPNGK--PDGIKIVPLSE-VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIG 293 (340) Q Consensus 229 ~------------g~~n~~~~~vl~~~~~--~~g~~~~pl~~-~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~ 293 (340) . |..|++++.++..+.+ ..+++++|++. +++|+||++++++++++||++|||||.+||+.++. + T Consensus 241 ~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~-~ 319 (467) T protein:vir:31 241 NEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESG-A 319 (467) T ss_pred hcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCC-C Confidence 3 5678999999887765 45788899875 57899999999999999999999999999986542 3 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 294 SLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 294 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) +++|+|++...|++++|+|++++||+ ||.+|... .++|+.-.++..+ T Consensus 320 ~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d 374 (467) T protein:vir:31 320 FSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKL 374 (467) T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccC Confidence 45789999999999999999999986 99888543 2566655666566 No 49 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=5.5e-57 Score=329.04 Aligned_cols=323 Identities=12% Similarity=0.076 Sum_probs=225.2 Q ss_pred CCCCC--------CCcccc-cccCCccce-------EEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh Q lcl|Aclame:pro 1 MSKRK--------PRKAVA-MTASAPQKM-------EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS 62 (340) Q Consensus 1 m~~~~--------~~~~~~-~~~~~~~~~-------~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~ 62 (340) |+-.| +..-.. .+.+..+.. .+..++...+- .+ ..++. +.+-....+..||++.+ ++++ T Consensus 1 ~~~~~~mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~~v~~-~~al~~~~V~~~i~~Ia~~ia~l 77 (432) T protein:vir:81 1 MPDEKKLGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISD-TG-AAVNA-DAIMRLDAVAACVKLVSQAIAAM 77 (432) T ss_pred CCchhhcchhhhhhhhcccccccccccccccccCccchhhhcccccc-cC-cccch-HhhhccHHHHHHHHHHHHhhhhC Confidence 33222 111000 011111100 01111110000 00 00000 00000112333444321 1111 Q ss_pred ----hhcchhhhhhhhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeec Q lcl|Aclame:pro 63 ----LRSAVHHSSPIYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRG 134 (340) Q Consensus 63 ----~r~~~~~~~~i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~ 134 (340) ++... .+... ..++. +....||++++. +||+.++.+++++||||+++.|+ .|++++|+|+++..|.+. T Consensus 78 p~~~y~~~~--~g~~~-~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~-~g~~~~L~~l~~~~v~v~ 153 (432) T protein:vir:81 78 PLTMYMRTP--DGRKE-AVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTIT 153 (432) T ss_pred ceeeEEecC--Cccee-cccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEE Confidence 01000 00011 11222 223579999886 56677888999999999999997 499999999999998876 Q ss_pred cc--CceEEEE-eCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC Q lcl|Aclame:pro 135 VD--DSVFWFV-ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDP 211 (340) Q Consensus 135 ~~--~~~~y~~-~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~ 211 (340) .+ +..+|.+ ..+++.+.++++||||+|.++ .++++|+||+..++.+|.++.++++|..++|+||++|++||++++ T Consensus 154 ~~~~g~~~y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~- 231 (432) T protein:vir:81 154 TDPKGNTAYRYRRTDGQMIDIPKQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDR- 231 (432) T ss_pred ECCCCcEEEEEEecCceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCC- Confidence 54 3445554 457788899999999999775 578999999999999999999999999999999999999999875 Q ss_pred CcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccc Q lcl|Aclame:pro 212 AQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPEN 291 (340) Q Consensus 212 ~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~ 291 (340) .+++++++++++.|+ |..|++++++++ .|++|+|++++++|+||+|++++++++||++|||||++||+.+.. T Consensus 232 ~l~~e~~~~~~~~~~---~~~nag~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~ 303 (432) T protein:vir:81 232 FLTDDQYDSFAKKVS---GSVEAGRAPLLE-----GGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAG 303 (432) T ss_pred CCCHHHHHHHHHHHh---hhhcCCCceecC-----CCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCc Confidence 689999999988774 567889999985 578899999999999999999999999999999999999987753 Q ss_pred c-cccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 292 I-GSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 292 ~-~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) + ++++|+||+.+.|+++||.||+++||+ ||++|..+ .++|+.-.|.+.| T Consensus 304 ~~~~~sn~eq~~~~f~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d 360 (432) T protein:vir:81 304 TTSWGSGIESQQLGFLTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRAD 360 (432) T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccC Confidence 3 456899999999999999999999986 99998643 3566666666666 No 50 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=2.3e-57 Score=331.14 Aligned_cols=318 Identities=16% Similarity=0.138 Sum_probs=227.0 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheee--eeecCchhhcccchH--Hhhhh----hhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVE--CISNGKWYEPPVSFS--GLAKS----LRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~--~~~~~~~~~~pv~~~--~l~~~----~r~~~~~~~~ 72 (340) |+--|++..-..+.- ..... .++ +.+...+. |.. ...+.. +-.||++. .++++ .+... ... T Consensus 1 m~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~g~----~~~~~Al~~~~-V~~cv~~ia~~iA~lp~~~~~~~~--~~~ 69 (417) T protein:vir:38 1 MKLFRGLATEVDPHW-ADHLL--DSG-VIPSFRGG----YLGISALRNSD-VLTAVSIVSGDVSRFPLVITDSST--DEV 69 (417) T ss_pred CccccccccCCCccc-hhhhc--ccc-cccccCCc----eechhhcccHH-HHHHHHHHHHhhccCeeEEEEcCC--cce Confidence 888765543322111 01000 000 11111110 110 001111 22344432 11111 01100 001 Q ss_pred hhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCC-ceeEEEEEecCcceeecc--cCceEEEEe--CC Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVT-GQLIKLLTSPAKYTRRGV--DDSVFWFVE--NF 146 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~-G~~~~L~pl~~~~~~~~~--~~~~~y~~~--~~ 146 (340) .....-..+....|||+++. +|++.++.+++++||||++++|+.. |.+..|+|++|..|.+.. .+..+|.+. .+ T Consensus 70 ~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~ 149 (417) T protein:vir:38 70 IDLANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNS 149 (417) T ss_pred eccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEcCC Confidence 11111112233579999986 5567788899999999999999864 679999999999987653 344555554 34 Q ss_pred ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHH Q lcl|Aclame:pro 147 TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMR 226 (340) Q Consensus 147 ~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~ 226 (340) +....++++||||||.++ .++++|+||+.+++++|.++.++++|+.++|+||++|++||..+ +.+++++.+++++.|+ T Consensus 150 ~~~~~~~~~dviH~r~~~-~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~-~~l~~e~~~~~~~~~~ 227 (417) T protein:vir:38 150 SMQKVCGFEDVIHWKFFS-YDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKE-SRLSAEARQKIREDFE 227 (417) T ss_pred cEEEEecCcceEEecCCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC-CCCCHHHHHHHHHHHH Confidence 556779999999999875 68899999999999999999999999999999999999999876 4689999999999999 Q ss_pred HhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHH Q lcl|Aclame:pro 227 NSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFV 306 (340) Q Consensus 227 ~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~ 306 (340) +..++.|+|+++|++ .|++|+|++++++|+||+|++++++++||++|||||++||. +++++|+|++...|+ T Consensus 228 ~~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~----~~~~s~~e~~~~~~~ 298 (417) T protein:vir:38 228 RAQAGADAGSPIIVD-----ATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ----NSPNQSVKQLADDYI 298 (417) T ss_pred HHhcccccCCceecc-----CCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC----CCcchhHHHHHHHHH Confidence 888778999999985 57789999999999999999999999999999999999983 457899999999999 Q ss_pred HHHHHHHHHHHHH-HHHhhCccc------eeecccccCCCC Q lcl|Aclame:pro 307 RNELSPLQDRFRE-VNDWLGMEV------IRFKEYTLDNPE 340 (340) Q Consensus 307 ~~~l~P~~~~ie~-ln~~l~~~~------~rf~~~~l~~~~ 340 (340) ++||.||++.||+ ||.+|..+. ++|+...++..+ T Consensus 299 ~~tl~P~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~~~~ 339 (417) T protein:vir:38 299 RNDLPFYFEPITSEFELKLLDDAQRHQYCIGFDTKSVNGLP 339 (417) T ss_pred HHHHHHHHHHHHHHHHhhhcChhhcccceEEechhhhhHHH Confidence 9999999999985 999986542 445433333333 No 51 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=4.7e-58 Score=334.87 Aligned_cols=210 Identities=35% Similarity=0.624 Sum_probs=194.1 Q ss_pred eeecccCceEEEEeC-----CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 131 TRRGVDDSVFWFVEN-----FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYI 205 (340) Q Consensus 131 ~~~~~~~~~~y~~~~-----~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gi 205 (340) ||+.++++.+|.+.. +++..+++++||||+|.++|.+++||+||+.+++.++.++.++++|+.+||+||++|+|| T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gi 80 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFI 80 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE Confidence 888889888887754 377889999999999999999999999999999999999999999999999999999999 Q ss_pred EEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc Q lcl|Aclame:pro 206 MYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM 285 (340) Q Consensus 206 l~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l 285 (340) |+++++.++++++++++++|++.+|++|+++++|+.+||+.+|++|+|++++++|+||+|++++++++||++|||||++| T Consensus 81 l~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp~~l 160 (219) T protein:vir:98 81 LYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPPGLS 160 (219) T ss_pred EEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHc Confidence 99998889999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhh-Cc--cceeecccccCCCC Q lcl|Aclame:pro 286 GGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWL-GM--EVIRFKEYTLDNPE 340 (340) Q Consensus 286 G~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l-~~--~~~rf~~~~l~~~~ 340 (340) |+.+.++++|+|+|++.+.|+++||+||+++||+ ||+++ .+ ..++|+++.+.+.. T Consensus 161 G~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 161 GIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSALKVNFKQPEKRDKN 219 (219) T ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCccEEeecCcccccCC Confidence 9988888899999999999999999999999996 88864 33 24778877776666 No 52 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=2.4e-57 Score=331.01 Aligned_cols=320 Identities=14% Similarity=0.136 Sum_probs=227.9 Q ss_pred CCCCCCC--cccccccCCccceEEEECCCceeecCcchh--hheeeeeecCchhhcccchHH--hhhh----hhcchhhh Q lcl|Aclame:pro 1 MSKRKPR--KAVAMTASAPQKMEAFTFGEPVPVLDKRDI--LDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHHS 70 (340) Q Consensus 1 m~~~~~~--~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~--~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~ 70 (340) |==+|+. .......+.......+ ||.+.+ .++..+ -.++.+ .-+..||++.+ ++++ .+.+.. T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~-~g~~~s-~~~~~vt~~~al~~----~~v~~~v~~ia~~iA~lp~~~~~~~~~-- 72 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSAL-LGSSRS-DSGQVVTPASALAL----TVLQNCVTLLAESIAQLPIELYERSGE-- 72 (419) T ss_pred CcccccccccccccccCcchhhHHh-hcCCCc-cCCcccchHHhhcc----HHHHHHHHHHHHhhccCceEEEEecCC-- Confidence 5333322 2222222222222221 111111 000000 001111 11223333311 1111 111110 Q ss_pred hhhhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc--eEEEEe Q lcl|Aclame:pro 71 SPIYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--VFWFVE 144 (340) Q Consensus 71 ~~i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~--~~y~~~ 144 (340) ......++. +...+|||+++. +||+.++.+++++||+|+++.|+..|++++|+|++|..|.+..+.+ .+|.+. T Consensus 73 -~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~~ 151 (419) T protein:vir:14 73 -DRKPATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPVYRVR 151 (419) T ss_pred -ccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEc Confidence 000111222 223479999886 5567778999999999999999999999999999999998776544 445554 Q ss_pred CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC---CCcCHHHHHHH Q lcl|Aclame:pro 145 NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD---PAQSATDVESL 221 (340) Q Consensus 145 ~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~---~~~~~e~~~~l 221 (340) ... .++.++|+|++.++ .++++|+||+..+++++.++.++++|..++|+||++|+|||++++ +.+++++.+++ T Consensus 152 ~~~---~~~~~~i~h~~~~~-~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~ 227 (419) T protein:vir:14 152 GSD---PMPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRI 227 (419) T ss_pred cCc---ccchhheeEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHH Confidence 332 47889999999875 589999999999999999999999999999999999999999874 33479999999 Q ss_pred HHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHH Q lcl|Aclame:pro 222 RDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEK 300 (340) Q Consensus 222 ~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~ 300 (340) ++.|++. .|.+|++++++++ .|++|+|++++++|+||+|++++++++||++|||||++||+.+ .++++|+|+ T Consensus 228 ~~~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~--~~t~s~~E~ 300 (419) T protein:vir:14 228 TDGWNAKFGGSGNAKKVALLQ-----EGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE--RATFSNIEH 300 (419) T ss_pred HHHHHHHhcCccccCCceecC-----CCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCC--CCCcccHHH Confidence 9999765 6778999999984 5788999999999999999999999999999999999999754 468999999 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 301 VAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 301 ~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +.+.|+++||.||+++||+ ||++|..+ .++|+.-.|++.| T Consensus 301 ~~~~f~~~~L~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~r~d 347 (419) T protein:vir:14 301 QSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGD 347 (419) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccC Confidence 9999999999999999985 99988543 2667666666666 No 53 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=1.5e-57 Score=332.06 Aligned_cols=321 Identities=14% Similarity=0.157 Sum_probs=229.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) ||--.+-..+...+........+..+ + ...+.. .+.-.+..+. -+..||++. +..+-..+ +...+... T Consensus 1 M~~~~~f~~r~~~~~~~~~~~~~~~~-~--~~~~~~-v~~~~al~~~-av~~cv~~i--a~~ia~~p-----~~~~~~~~ 68 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYYPFMVQNG-S--IVPNSL-VDATEALKNS-DLYAVTSLI--SSDIAGTR-----FIGNQVFT 68 (359) T ss_pred CcccchhhccccCCCCcchhhhhccc-c--ccCCcc-cCHHHhhcch-HHHHHHHHH--HHhhhcCc-----cccchHHH Confidence 77642111111111110000001111 0 000000 0000000111 122344432 11111000 11111222 Q ss_pred HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-eEEEEe--CCceEEEEcccc Q lcl|Aclame:pro 81 ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-VFWFVE--NFTQPHEFAPDT 156 (340) Q Consensus 81 ~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-~~y~~~--~~~~~~~~~~~d 156 (340) ....+|||+++. +||+.++.+++++||||++++|+..|++.+|+|+++..+++..+.+ .+|.+. .++...+++++| T Consensus 69 ~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~~~~~~e 148 (359) T protein:vir:10 69 SVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDDTLTYEVNQFDDYPSAKYNASE 148 (359) T ss_pred HHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCCeEEEEEEecCCceEEEEcccc Confidence 234579999886 5667778899999999999999999999999999999988765444 456664 456788999999 Q ss_pred EEEecCCC----CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 157 VFHLLEPD----INQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLG 232 (340) Q Consensus 157 vih~r~~~----~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 232 (340) |||||.++ +.++++|+||+.+++.++.++.++++|..++|+||++|+|||+++.+.+++++++++++.|++.+|++ T Consensus 149 vih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~~ 228 (359) T protein:vir:10 149 MIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANGGN 228 (359) T ss_pred eEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCcc Confidence 99999764 34889999999999999999999999999999999999999999877899999999999999989999 Q ss_pred cccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 233 NFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSP 312 (340) Q Consensus 233 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P 312 (340) |+|+++|++ +|++|+|++++++|+||+|++++++++||++|||||++||.....++++++++++...|+..+|.| T Consensus 229 n~g~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p 303 (359) T protein:vir:10 229 NSGRVMVLD-----QSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFIEP 303 (359) T ss_pred ccCCceecC-----CCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHHHH Confidence 999999985 578999999999999999999999999999999999999987767778999999999999999999 Q ss_pred HHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 313 LQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 313 ~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) |.+.|++ |+..+..+.-.+.+++ +.. T Consensus 304 ~~~~l~~~l~~~~~~~~~~~~~~d--~~~ 330 (359) T protein:vir:10 304 LISELRIKCDSSIGVDMSPITDYS--NSV 330 (359) T ss_pred HHHHHHHHhhhhhcccchhhhhcC--HHH Confidence 9999885 7777644432222221 111 No 54 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=1.8e-57 Score=331.67 Aligned_cols=319 Identities=17% Similarity=0.164 Sum_probs=228.5 Q ss_pred CCC---CCCCcccccccCC--ccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchhh Q lcl|Aclame:pro 1 MSK---RKPRKAVAMTASA--PQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHH 69 (340) Q Consensus 1 m~~---~~~~~~~~~~~~~--~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~ 69 (340) |.= -++.......+.. ...... .+|.+. +... ..+. ...+..||++.+ ++++ ++.+..+ T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~----~al~----~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 70 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLLLQ-WLGVDP-DTPR----NQLS----EATYFACLKILSESLGKLPLKMYQKTERG 70 (411) T ss_pred CchHHHHHhhccCcccccccchHHHHH-HhcCcc-cChh----hhhc----cHHHHHHHHHHHHhHhhCceeEEEecCCc Confidence 442 1111111111100 000000 111111 1110 0000 011223333321 1111 1111111 Q ss_pred hhhhhhhhhhH--HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-------- Q lcl|Aclame:pro 70 SSPIYVKRNVL--ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-------- 138 (340) Q Consensus 70 ~~~i~~k~n~~--~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 138 (340) ....+...+ +...+|||++++ +|++.++.+++++||||++++|+ .|++++|+|++|..|++..+.. T Consensus 71 --~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~ 147 (411) T protein:vir:81 71 --IVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKNA 147 (411) T ss_pred --eeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccce Confidence 011111111 223479999886 55667788999999999999998 5999999999999998776532 Q ss_pred eEEEEe--CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHH Q lcl|Aclame:pro 139 VFWFVE--NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSAT 216 (340) Q Consensus 139 ~~y~~~--~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e 216 (340) .+|.+. .++..+.|+++||||+|.+.+.++++|+||+..++.++.++.++++|..++|+||++|+|||++++ .++++ T Consensus 148 ~~~~~~~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e 226 (411) T protein:vir:81 148 IWYRYNDPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTG-DLNQE 226 (411) T ss_pred EEEEEEecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCCHH Confidence 344444 467788899999999997767889999999999999999999999999999999999999999865 68999 Q ss_pred HHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccccc Q lcl|Aclame:pro 217 DVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSL 295 (340) Q Consensus 217 ~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~ 295 (340) +++++++.|++. .|.+|+|++++++ +|++|+|++++++|+||+|++++++++||++|||||++||+.+ .+++ T Consensus 227 ~~~~~~~~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~ 299 (411) T protein:vir:81 227 ARDRLVKGFEQFANGSKNAGKIIPVP-----LGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYE--KSSY 299 (411) T ss_pred HHHHHHHHHHHHhcCccccCCceecC-----CCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCc Confidence 999999999875 5678999999884 6788999999999999999999999999999999999999865 3689 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 296 GDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 296 ~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) +|+|++...|+++||.|++++||+ ||++|..+ .++|+.-.|++.| T Consensus 300 ~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d 352 (411) T protein:vir:81 300 ASAEAQNLAFYVDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRAD 352 (411) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccC Confidence 999999999999999999999986 99988532 2567666666666 No 55 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=4.6e-57 Score=329.44 Aligned_cols=321 Identities=11% Similarity=0.058 Sum_probs=224.7 Q ss_pred CCCCCCCcccccccCCccce-------EEEECCCceeecCcchhh--heeeeeecCchhhcccchH--Hhhhh----hhc Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM-------EAFTFGEPVPVLDKRDIL--DYVECISNGKWYEPPVSFS--GLAKS----LRS 65 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~-------~~~~f~~p~~~~~~~~~~--~~~~~~~~~~~~~~pv~~~--~l~~~----~r~ 65 (340) |++.|.--....+.+..+.. ....|+.+.+- .+..+. .++. ...+..||++. .++++ ++. T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~v~~~~a~~----~~aV~~~v~~Ia~~ia~lp~~~y~~ 84 (432) T protein:vir:97 10 LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISD-TGAAVNADAIMR----LDAVAACVKLVSQAVAAMPLMMYMR 84 (432) T ss_pred hhhhHhhcCCccccccccccccccCchhhhhhcccccc-cCcccchHhhhc----chHHHHHHHHHHHhhccCceEEEEe Confidence 34332111111111111100 00011111000 000000 0000 11223344432 11111 010 Q ss_pred chhhhhhhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc--Cce Q lcl|Aclame:pro 66 AVHHSSPIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD--DSV 139 (340) Q Consensus 66 ~~~~~~~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~--~~~ 139 (340) .. .+... ..++.+ ...+|||+++. +||+.++.+++++||||++++|+. |++.+|+|++|..|++..+ +.. T Consensus 85 ~~--~g~~~-~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~-g~~~~L~~l~p~~v~v~~~~~g~~ 160 (432) T protein:vir:97 85 TP--DGRKE-AVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD-GRIESLQYLANDRLTITTDTKGNT 160 (432) T ss_pred cC--CCccc-ccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCcceEEEEcCCCcE Confidence 00 00111 122222 23579999886 556778889999999999999974 9999999999999887653 344 Q ss_pred EEEEe-CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHH Q lcl|Aclame:pro 140 FWFVE-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDV 218 (340) Q Consensus 140 ~y~~~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~ 218 (340) +|.+. .+++.++++++||||+|.++ .++++|+||+..+++++.++.++++|..++|+||++|+|||++++ .++++++ T Consensus 161 ~y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~-~l~~e~~ 238 (432) T protein:vir:97 161 AYRYRRTDGQMIDIPRQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDR-FLTDDQY 238 (432) T ss_pred EEEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCC-CCCHHHH Confidence 55554 56778899999999999875 578999999999999999999999999999999999999999775 6899999 Q ss_pred HHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccc-ccccc Q lcl|Aclame:pro 219 ESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENI-GSLGD 297 (340) Q Consensus 219 ~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~-~~~~n 297 (340) +++++.|. |..|++++++++ +|++|+|++++++|+||+|++++++++||++|||||++||+.+.++ ++++| T Consensus 239 ~~~~~~~~---~~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~ 310 (432) T protein:vir:97 239 DSFSKKVS---GSVEAGRAPLLE-----GGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSG 310 (432) T ss_pred HHHHHHHh---hhhcCCCceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchh Confidence 98888774 567889999985 5788999999999999999999999999999999999999876533 44589 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 298 VEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 298 ~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +|++.+.|+++||+||+++||+ ||++|..+ .++|+.-.|++.| T Consensus 311 ~e~~~~~f~~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d 360 (432) T protein:vir:97 311 IESQQLGFLTMTLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRAD 360 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccC Confidence 9999999999999999999986 99988532 3566666666666 No 56 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=1.1e-56 Score=327.47 Aligned_cols=324 Identities=18% Similarity=0.215 Sum_probs=226.7 Q ss_pred CC------CCCCCcccccccCCcc----ceEEEECCCce----ee-----cCcchhhheeeeeecCchhhcccchHHhhh Q lcl|Aclame:pro 1 MS------KRKPRKAVAMTASAPQ----KMEAFTFGEPV----PV-----LDKRDILDYVECISNGKWYEPPVSFSGLAK 61 (340) Q Consensus 1 m~------~~~~~~~~~~~~~~~~----~~~~~~f~~p~----~~-----~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~ 61 (340) |. +|+++++... +...+ ....+.|+.+. +| |...+++.|+.+.+. ..-..|+.+ T Consensus 1 Mg~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~-~iA~lp~~~----- 73 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDA-AEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSE-TIATLPLST----- 73 (457) T ss_pred Cchhhhhhcccccccccc-ccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHH-hHhhCceEE----- Confidence 54 2222222111 11100 00112233221 11 111112222221110 011112111 Q ss_pred hhhcchhhhhhhhhhhhhHHHhhhccCCCc-HHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-- Q lcl|Aclame:pro 62 SLRSAVHHSSPIYVKRNVLASTYIPHPLLS-RQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-- 138 (340) Q Consensus 62 ~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~-~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-- 138 (340) .+........+ .........-.||++++ .+||+.++.+++++||||+++.++ .|++.+|+|++|..|++..+.. T Consensus 74 -~~~~~~~~~~~-~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~ 150 (457) T protein:vir:62 74 -YSKRGGTRKEI-DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDG 150 (457) T ss_pred -EEecCCccccc-cchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCC Confidence 11111000011 11111122235666665 577888899999999999999776 5999999999999887654321 Q ss_pred ----e--EEEEeCCceE---EEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC Q lcl|Aclame:pro 139 ----V--FWFVENFTQP---HEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT 209 (340) Q Consensus 139 ----~--~y~~~~~~~~---~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~ 209 (340) . .|.+..++.. ..|+++||||||.+++.++++|+||+.+++.+|.++.++++|+.++|+||++|+|||+++ T Consensus 151 ~~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 230 (457) T protein:vir:62 151 LRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVP 230 (457) T ss_pred ccceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcC Confidence 1 2444444433 468999999999998877799999999999999999999999999999999999999987 Q ss_pred CCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 210 DPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGK 288 (340) Q Consensus 210 ~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~ 288 (340) + .+++|+++++++.|++. .|.+|+++++|++ .|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 231 ~-~ls~e~~~~~~~~~~~~~~G~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 304 (457) T protein:vir:62 231 G-TMSEEGLARAREAWRAANSGVDNAHRVALLT-----EGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDA 304 (457) T ss_pred C-CCCHHHHHHHHHHHHHHhcCccccCcceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC Confidence 5 78999999999999875 5678999999985 578899999999999999999999999999999999999998 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 289 PENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 289 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) ...+.+++|+|++.+.|+++||+||+++||+ ||++|..+ .++|+.-.|++.+ T Consensus 305 ~~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d 363 (457) T protein:vir:62 305 TNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGA 363 (457) T ss_pred CCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccC Confidence 8766677999999999999999999999986 99999654 2556655666555 No 57 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=2.1e-56 Score=325.79 Aligned_cols=323 Identities=14% Similarity=0.186 Sum_probs=230.6 Q ss_pred CC---CCCCCcccccccCCccceEEEECCCceeecCcchh--hheeeeeecCchhhcccchHH--hhh----hhhcchhh Q lcl|Aclame:pro 1 MS---KRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDI--LDYVECISNGKWYEPPVSFSG--LAK----SLRSAVHH 69 (340) Q Consensus 1 m~---~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~--~~~~~~~~~~~~~~~pv~~~~--l~~----~~r~~~~~ 69 (340) |= --|++..... .+.......|..+-+ ...+..+ -.++. ...+..||++.+ +++ +.+.+... T Consensus 1 ~~f~~~f~r~~~~~~-~~~~~~~~~~~~~~~--~~~g~~v~~~~~l~----~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~ 73 (413) T protein:vir:48 1 MFFSGLFQRKSDAPV-TTPAELAEAIGLSYD--TYTGKRISSQRAMR----LTAVYSCVRVLAESVGMLPCSLYKISGTL 73 (413) T ss_pred CccchhhccCccCCc-cchHHHHHhhhcCcc--cccCceechhhhhc----cHHHHHHHHHHHHhhhhCceEEEEecCCc Confidence 32 2222222211 122222222221111 0111000 00111 122334444422 111 11111110 Q ss_pred hhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc--eEEEEe-C Q lcl|Aclame:pro 70 SSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--VFWFVE-N 145 (340) Q Consensus 70 ~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~--~~y~~~-~ 145 (340) ..-+...+-..+....|||+++. +|++.++.++++.||||++++|+ .|++++|+|+++..|++..+.+ .+|.+. . T Consensus 74 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~ 152 (413) T protein:vir:48 74 KTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQWQPVYQVTFP 152 (413) T ss_pred ceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCceEEEEEEec Confidence 00000111111223479999987 56677788999999999999997 5899999999999988766544 344443 4 Q ss_pred CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 146 FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAM 225 (340) Q Consensus 146 ~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~ 225 (340) +|....++++||||+|.++ .++++|+||+..+..++.++.++++|..++|+||++|+|||++++ .+++|+.+++++.| T Consensus 153 ~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~~~~e~~~~~~~~~ 230 (413) T protein:vir:48 153 DGSVDVLTQDEIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQ-KLTPDAYERLKKDF 230 (413) T ss_pred CceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHHHHH Confidence 6777889999999999886 578999999999999999999999999999999999999999875 68999999999999 Q ss_pred HHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH Q lcl|Aclame:pro 226 RNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV 304 (340) Q Consensus 226 ~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~ 304 (340) ++. .|.+|+++++++. .|++|+|++.+++|+||+|.+++++++||++|||||++||+.. +++++|+|++... T Consensus 231 ~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~~n~e~~~~~ 303 (413) T protein:vir:48 231 EERHTGLGNAHRPMILE-----MGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTD--RATFNNIEELGLG 303 (413) T ss_pred HHHhcCccccCcceecC-----CCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCc--CCCcccHHHHHHH Confidence 875 5668999999984 5788999999999999999999999999999999999999754 4789999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) |+++||+||+++||+ ||++|..+ .++|+.-.|++.| T Consensus 304 f~~~~i~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d 346 (413) T protein:vir:48 304 FINYSLVPYLTRIEQRINTGLVRESKQGKFYAKFNAGALLRGD 346 (413) T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCCeEEEEechhhhccC Confidence 999999999999985 99998643 3667665666655 No 58 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=6.7e-57 Score=328.54 Aligned_cols=322 Identities=14% Similarity=0.109 Sum_probs=230.3 Q ss_pred CCCCCCCccccccc--CCccceEEEECCCceeecCcchh--hheeeeeecCchhhcccchHH--hhhh----hhcchhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTA--SAPQKMEAFTFGEPVPVLDKRDI--LDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHHS 70 (340) Q Consensus 1 m~~~~~~~~~~~~~--~~~~~~~~~~f~~p~~~~~~~~~--~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~ 70 (340) |--.|...+....+ ......+.+..+.+. ..+..+ -..+. ...+..||++.+ ++++ .+.+. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s--~~~~~v~~~~al~----~~~v~~cv~~ia~~ia~lp~~~~~~~~--- 71 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVTPASALS----LTVLQNCVTLLAESIAQLPVELYERSG--- 71 (419) T ss_pred CCcccccccccCcCCCCcchhhHHhhccccc--ccCcccChHHhhc----cHHHHHHHHHHHHhhccCceEEEEecC--- Confidence 87555433322222 112222222112221 000000 00111 112333444321 1111 11111 Q ss_pred hhhhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCC Q lcl|Aclame:pro 71 SPIYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENF 146 (340) Q Consensus 71 ~~i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~ 146 (340) .......++. +...+|||+++. +|++.++.+++++||||++++|+..|+|++|+|++|..|++..+.+..+.+... T Consensus 72 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y~~~ 151 (419) T protein:vir:80 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVA 151 (419) T ss_pred CCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEc Confidence 0011111222 233589999876 567788889999999999999999999999999999999887766533333323 Q ss_pred ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC---CCcCHHHHHHHHH Q lcl|Aclame:pro 147 TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD---PAQSATDVESLRD 223 (340) Q Consensus 147 ~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~---~~~~~e~~~~l~~ 223 (340) +. ..+++++|+|++.++ .+++||+||+..++.+|.++.++++|..++|+||++|+|||++++ +..++++.+++++ T Consensus 152 ~~-~~~~~~~i~h~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~ 229 (419) T protein:vir:80 152 GA-DPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITD 229 (419) T ss_pred Cc-cccchhheEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHH Confidence 32 248899999999765 589999999999999999999999999999999999999999864 3458899999999 Q ss_pred HHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 224 AMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 224 ~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) .|++. .|.+|+|+++++. .|++|+|++.+++|+||+|++++++++||++|||||.+||+.+ +++++|+|++. T Consensus 230 ~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~--~~t~~n~e~~~ 302 (419) T protein:vir:80 230 GWNAKFGGSGNAKKVALLQ-----EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE--RATFSNIEHQS 302 (419) T ss_pred HHHHHhcCccccCCceecC-----CCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCC--CCCcccHHHHH Confidence 99765 5678999999984 5788999999999999999999999999999999999999754 47899999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +.|+++||.||+++||+ ||++|..+ .++|+.-.|++.| T Consensus 303 ~~f~~~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~l~~~d 347 (419) T protein:vir:80 303 LQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGD 347 (419) T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCccccCCeEEEEechhhhccC Confidence 99999999999999985 99988543 3667666666666 No 59 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=1e-56 Score=327.59 Aligned_cols=318 Identities=15% Similarity=0.232 Sum_probs=228.1 Q ss_pred CCCCCCCcccccccCCccceEEEE-CC-Cc--eeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFT-FG-EP--VPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHHS 70 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~-f~-~p--~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~ 70 (340) |==+|......++.+.... ..+. || .+ ..| +.. .++. ...+..||++.+ ++++ ++.. . T Consensus 1 m~f~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~v-~~~---~al~----~~~v~~~i~~ia~~ia~lp~~~~~~~---~ 68 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDK-KILEWLGINPSETYV-NGK---SCLK----QATVFGCIRILSDNISKLPIKIYQKK---D 68 (409) T ss_pred CcccccccCcCCCCCCChH-HHHHHhcCCcCccee-chh---hhhc----cHHHHHHHHHHHHhhhhCceEEEEec---C Confidence 4322221111111111100 0000 01 00 000 000 0000 111223333321 1111 1100 0 Q ss_pred hhhhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-------- Q lcl|Aclame:pro 71 SPIYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-------- 138 (340) Q Consensus 71 ~~i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 138 (340) ..... .++. +....|||+++. +|++.++.+++++||||++++|+..|++++|+|++|.+|++..+.. T Consensus 69 ~~~~~-~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~ 147 (409) T protein:vir:10 69 GIKRV-PDHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENN 147 (409) T ss_pred Ceeec-cCchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccce Confidence 00011 1222 233579999986 5566788999999999999999999999999999999998765432 Q ss_pred eEEEE-eCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHH Q lcl|Aclame:pro 139 VFWFV-ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATD 217 (340) Q Consensus 139 ~~y~~-~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~ 217 (340) .+|.+ ...+....++++||||+|.+++ ++++|+||+.++.+++.++.++++|+.++|+||++|+|||++++ .+++++ T Consensus 148 ~~y~~~~~~g~~~~~~~~evih~r~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~-~l~~e~ 225 (409) T protein:vir:10 148 VWYLYTDDLGQRHKFMSDEILHFKGLTA-DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAG-DLNPEA 225 (409) T ss_pred EEEEEEeCCceeEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCC-CCCHHH Confidence 23444 3557788999999999998875 68999999999999999999999999999999999999999765 689999 Q ss_pred HHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccc Q lcl|Aclame:pro 218 VESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLG 296 (340) Q Consensus 218 ~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~ 296 (340) .+++++.|++. .|..|+++++++. .|++|+|++.+++|+||+|++++++++||++|||||.+||+.+ +++++ T Consensus 226 ~~~~~~~~~~~~~g~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~~~~ 298 (409) T protein:vir:10 226 EEVFKENFERMSSGLKNAHRIAMLP-----IGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLD--RATHS 298 (409) T ss_pred HHHHHHHHHHHhccccccCCceecC-----CCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCC--CCccc Confidence 99999999875 5668999999984 5788999999999999999999999999999999999999765 46899 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 297 DVEKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 297 n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |+|++.+.|+++||.|+++.||+ ||++|..+ .++|+.-.|++.| T Consensus 299 ~~e~~~~~f~~~~l~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d 350 (409) T protein:vir:10 299 NITEQNREFYIDTLQSILNMYELEINYKLFLISEIKNGFYSKFNVDTILRAD 350 (409) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccC Confidence 99999999999999999999986 99988532 3667666666666 No 60 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=2e-56 Score=325.94 Aligned_cols=318 Identities=14% Similarity=0.194 Sum_probs=220.4 Q ss_pred CCCCCCCc--------------ccccccCCcc-ceE-EEEC-C-Cceee-----cCcchhhheeeeeecCchhhcccchH Q lcl|Aclame:pro 1 MSKRKPRK--------------AVAMTASAPQ-KME-AFTF-G-EPVPV-----LDKRDILDYVECISNGKWYEPPVSFS 57 (340) Q Consensus 1 m~~~~~~~--------------~~~~~~~~~~-~~~-~~~f-~-~p~~~-----~~~~~~~~~~~~~~~~~~~~~pv~~~ 57 (340) =|+|+.++ +...+....+ .+. ..++ + ....+ |...+++.|+.+..+ ..-..|+.++ T Consensus 14 ~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~-~iA~lpl~~~ 92 (441) T protein:vir:98 14 KSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIAS-DLARMPIRVT 92 (441) T ss_pred ccccchhhhhhccccccccccccccCCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHHHH-hhccCceEEe Confidence 12221111 1110110000 000 0011 0 01111 112222222222111 1111222211 Q ss_pred HhhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc Q lcl|Aclame:pro 58 GLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD 136 (340) Q Consensus 58 ~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~ 136 (340) . + +......+-..+....|||+++. +|++.++.+++++||||++++|+..|+|++|+|++|..|++..+ T Consensus 93 ~-------~---~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~ 162 (441) T protein:vir:98 93 V-------N---GQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLD 162 (441) T ss_pred c-------C---CcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEC Confidence 1 0 00000001111233579999886 55678889999999999999999999999999999999887654 Q ss_pred C--ceEEEEe-----CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC Q lcl|Aclame:pro 137 D--SVFWFVE-----NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT 209 (340) Q Consensus 137 ~--~~~y~~~-----~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~ 209 (340) . ..+|.+. ..+....++++||||+|.++ .++++|+||+..+++++.++.++++|..++|+||++|+|||+++ T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~dviHir~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~ 241 (441) T protein:vir:98 163 ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK 241 (441) T ss_pred CCCcEEEEEEEeccCcceeeEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeC Confidence 3 3444432 23456789999999999775 68899999999999999999999999999999999999999998 Q ss_pred CCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 210 DPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGK 288 (340) Q Consensus 210 ~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~ 288 (340) +...++++++++++.|++. .|.+|+|++++++ +|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 242 ~~~~~~e~~~~~~~~~~~~~~G~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:98 242 GVLDNKKARDRAREEFHKSFSGTKQAGKVVVLD-----ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceecC-----CCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC Confidence 8766889999999999775 5678999999985 578899999999999999999999999999999999999863 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc----ceeecccccCCCC Q lcl|Aclame:pro 289 PENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME----VIRFKEYTLDNPE 340 (340) Q Consensus 289 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~----~~rf~~~~l~~~~ 340 (340) . ++ ++.+++...|. +||+||+++||+ ||.+|.++ .++|+.-.|+..| T Consensus 317 ~---~~-~s~~q~~~~y~-~tl~P~~~~ie~~ln~~L~~~~~~~~~~fd~~~llr~d 368 (441) T protein:vir:98 317 T---AN-MSITDANLDYL-STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVD 368 (441) T ss_pred C---CC-ccHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccCceEEEechhhhccC Confidence 2 22 35677777776 599999999985 99999654 3566665666666 No 61 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=2.9e-56 Score=325.04 Aligned_cols=318 Identities=14% Similarity=0.176 Sum_probs=218.0 Q ss_pred CCCCCCCcc-----------cccccCCccceE-----EEECC--Cceee-----cCcchhhheeeeeecCchhhcccchH Q lcl|Aclame:pro 1 MSKRKPRKA-----------VAMTASAPQKME-----AFTFG--EPVPV-----LDKRDILDYVECISNGKWYEPPVSFS 57 (340) Q Consensus 1 m~~~~~~~~-----------~~~~~~~~~~~~-----~~~f~--~p~~~-----~~~~~~~~~~~~~~~~~~~~~pv~~~ 57 (340) =|||+.++. ++.........+ ..++. ...++ |...+++.|+.+.++ ..-..|+.++ T Consensus 14 ~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~-~iA~lp~~~~ 92 (441) T protein:vir:79 14 KSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIAS-DLARMPIRVT 92 (441) T ss_pred cccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHH-hhccCceeee Confidence 222222111 000000000000 00111 01111 111122222221110 0111122111 Q ss_pred HhhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc Q lcl|Aclame:pro 58 GLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD 136 (340) Q Consensus 58 ~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~ 136 (340) + + +.......-..+....|||+++. +||+.++.+++++||||++++|+..|+|++|+|++|..|.+..+ T Consensus 93 ------~-~---~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d 162 (441) T protein:vir:79 93 ------V-N---GQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSD 162 (441) T ss_pred ------c-C---ccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEC Confidence 0 0 00000001111223479999986 55678888999999999999999999999999999999987654 Q ss_pred C--ceEEEEe-----CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC Q lcl|Aclame:pro 137 D--SVFWFVE-----NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT 209 (340) Q Consensus 137 ~--~~~y~~~-----~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~ 209 (340) . ..+|.+. ..+....++++||||+|.++ .++++|+||+.+++++|.++.++++|..++|+||++|+|||+++ T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 241 (441) T protein:vir:79 163 ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK 241 (441) T ss_pred CCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC Confidence 3 3344332 23456789999999999764 68999999999999999999999999999999999999999998 Q ss_pred CCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 210 DPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGK 288 (340) Q Consensus 210 ~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~ 288 (340) +...++++++++++.|++. .|.+|+|+++|++ +|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 242 ~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~-----~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:79 242 GVLDNKKARDRAREEFHKSFSGTKQAGKVVVLD-----ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceecC-----CCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC Confidence 8767899999999999775 6778999999985 578899999999999999999999999999999999999963 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc----ceeecccccCCCC Q lcl|Aclame:pro 289 PENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME----VIRFKEYTLDNPE 340 (340) Q Consensus 289 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~----~~rf~~~~l~~~~ 340 (340) . ++ ++.+++...|. +||+||+++||+ ||.+|.++ .++|+.-.|++.| T Consensus 317 ~---~~-~s~~q~~~~~~-~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D 368 (441) T protein:vir:79 317 T---AN-MSITDANLDYL-STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVD 368 (441) T ss_pred C---CC-ccHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccCceEEeechhhhccC Confidence 2 23 34567666664 699999999986 99999654 2556655566655 No 62 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=2.9e-56 Score=325.04 Aligned_cols=318 Identities=14% Similarity=0.176 Sum_probs=218.0 Q ss_pred CCCCCCCcc-----------cccccCCccceE-----EEECC--Cceee-----cCcchhhheeeeeecCchhhcccchH Q lcl|Aclame:pro 1 MSKRKPRKA-----------VAMTASAPQKME-----AFTFG--EPVPV-----LDKRDILDYVECISNGKWYEPPVSFS 57 (340) Q Consensus 1 m~~~~~~~~-----------~~~~~~~~~~~~-----~~~f~--~p~~~-----~~~~~~~~~~~~~~~~~~~~~pv~~~ 57 (340) =|||+.++. ++.........+ ..++. ...++ |...+++.|+.+.++ ..-..|+.++ T Consensus 14 ~~~~~~~~~~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~-~iA~lp~~~~ 92 (441) T protein:vir:94 14 KSRKQSRKELVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIAS-DLARMPIRVT 92 (441) T ss_pred cccccchhhhhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHH-hhccCceeee Confidence 222222111 000000000000 00111 01111 111122222221110 0111122111 Q ss_pred HhhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc Q lcl|Aclame:pro 58 GLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD 136 (340) Q Consensus 58 ~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~ 136 (340) + + +.......-..+....|||+++. +||+.++.+++++||||++++|+..|+|++|+|++|..|.+..+ T Consensus 93 ------~-~---~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d 162 (441) T protein:vir:94 93 ------V-N---GQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSD 162 (441) T ss_pred ------c-C---ccccccchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEC Confidence 0 0 00000001111223479999986 55678888999999999999999999999999999999987654 Q ss_pred C--ceEEEEe-----CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC Q lcl|Aclame:pro 137 D--SVFWFVE-----NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT 209 (340) Q Consensus 137 ~--~~~y~~~-----~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~ 209 (340) . ..+|.+. ..+....++++||||+|.++ .++++|+||+.+++++|.++.++++|..++|+||++|+|||+++ T Consensus 163 ~~g~~~~~~~~~~~~~~~~~~~~~~~dvih~k~~~-~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~ 241 (441) T protein:vir:94 163 ARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMK 241 (441) T ss_pred CCccEEEEEEEeccCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcC Confidence 3 3344332 23456789999999999764 68999999999999999999999999999999999999999998 Q ss_pred CCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 210 DPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGK 288 (340) Q Consensus 210 ~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~ 288 (340) +...++++++++++.|++. .|.+|+|+++|++ +|++|+|++++++|+||+|++++++++||++|||||++||+. T Consensus 242 ~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~-----~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~ 316 (441) T protein:vir:94 242 GVLDNKKARDRAREEFHKSFSGTKQAGKVVVLD-----ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIE 316 (441) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCcceecC-----CCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCC Confidence 8767899999999999775 6778999999985 578899999999999999999999999999999999999963 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc----ceeecccccCCCC Q lcl|Aclame:pro 289 PENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME----VIRFKEYTLDNPE 340 (340) Q Consensus 289 ~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~----~~rf~~~~l~~~~ 340 (340) . ++ ++.+++...|. +||+||+++||+ ||.+|.++ .++|+.-.|++.| T Consensus 317 ~---~~-~s~~q~~~~~~-~tl~P~~~~ie~eln~kl~~~~~~~~~~fd~~~llr~D 368 (441) T protein:vir:94 317 T---AN-MSITDANLDYL-STLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVD 368 (441) T ss_pred C---CC-ccHHHHHHHHH-HHHHHHHHHHHHHHhhhccccccCceEEeechhhhccC Confidence 2 23 34567666664 699999999986 99999654 2556655566655 No 63 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=5.4e-56 Score=323.57 Aligned_cols=319 Identities=11% Similarity=0.142 Sum_probs=227.4 Q ss_pred CCCCCCCcccccc--c--CCccceEEEECCCceeecCcchhhheeeeee----cCchhhcccchHHhhhhhhcchh-h-- Q lcl|Aclame:pro 1 MSKRKPRKAVAMT--A--SAPQKMEAFTFGEPVPVLDKRDILDYVECIS----NGKWYEPPVSFSGLAKSLRSAVH-H-- 69 (340) Q Consensus 1 m~~~~~~~~~~~~--~--~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~----~~~~~~~pv~~~~l~~~~r~~~~-~-- 69 (340) |+|.+...+.... + -..+.. ..-+|.++... ++..++. ....+..||++. +..+-.-+. + T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~v~~~~~~~~~~V~~ci~~I--a~~ia~lp~~~~~ 71 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTS---KLYDFSPWKNR----SFWGVINNTLETNETIFSAITKL--SNSMASLPLKMYE 71 (409) T ss_pred CCccchhhhhhhhhhhhhhccccc---cccccccccCc----cccccchhhhhccHHHHHHHHHH--HHhhhhCceeEee Confidence 9998644332111 0 111111 11123222221 1111111 112233444432 111111110 0 Q ss_pred hhhhhhhhhhHHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEe- Q lcl|Aclame:pro 70 SSPIYVKRNVLASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVE- 144 (340) Q Consensus 70 ~~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~- 144 (340) ..-.....-..+...+|||+++.. ||+.++.+++++||||+++.|+..|++++|+|++|..|.+..+. ..+|.+. T Consensus 72 ~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~ 151 (409) T protein:vir:93 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) T ss_pred ccccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEc Confidence 000001111122345799999874 56788889999999999999999999999999999988876543 2455554 Q ss_pred CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDA 224 (340) Q Consensus 145 ~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~ 224 (340) .++..+.++++||||+|.+++.+++||+||+.++++++.++.+++++. ++.++..+++|+. +++.+++++++++++. T Consensus 152 ~~g~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~~~~ 228 (409) T protein:vir:93 152 ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVGKEKRQQVLED 228 (409) T ss_pred CCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEe-cCCCCCHHHHHHHHHH Confidence 456778899999999998888899999999999999999999999984 5566655666665 5678999999999999 Q ss_pred HHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH Q lcl|Aclame:pro 225 MRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV 304 (340) Q Consensus 225 ~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~ 304 (340) |++.. +|++++++++ +|++|+|++++++|+||+|++++++++||++|||||++||+. .+++++|+|++.+. T Consensus 229 ~~~~~--~~~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~--~~~~~sn~e~~~~~ 299 (409) T protein:vir:93 229 FKQYY--EENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKNEELNRF 299 (409) T ss_pred HHHHh--hcCCCeeecC-----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccHHHHHHH Confidence 98755 3667888874 678899999999999999999999999999999999999974 35789999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |+++||.|++++||+ +|++|..+ .++|+.-.|++.| T Consensus 300 f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d 343 (409) T protein:vir:93 300 YLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccC Confidence 999999999999985 99998644 2667766666666 No 64 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=5.4e-56 Score=323.58 Aligned_cols=326 Identities=12% Similarity=0.127 Sum_probs=229.8 Q ss_pred CCCCCCCcccccccCCccceEE--EECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhc--chhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEA--FTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRS--AVHHS 70 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~--~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~--~~~~~ 70 (340) |.--++-..+....+++..+.. ..++.+..+ +.. .....++....++..||++.+ ++++ ++. ++.+. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg~~~ 77 (423) T protein:vir:81 1 MGFLQKLGLAPSVVATPEPIELVGPIFESLKLS-TKN--MTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDGGRE 77 (423) T ss_pred CchhHhhccccccccCccccccccccccccccc-cch--hhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCCcee Confidence 3322211111111111111111 111222111 110 011111222334555665422 2221 110 11111 Q ss_pred hhhhhhhhhHH--HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecC--CceeEEEEEecCcceeeccc----CceEE Q lcl|Aclame:pro 71 SPIYVKRNVLA--STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSV--TGQLIKLLTSPAKYTRRGVD----DSVFW 141 (340) Q Consensus 71 ~~i~~k~n~~~--~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~--~G~~~~L~pl~~~~~~~~~~----~~~~y 141 (340) .+ .++.+ ....|||+++. +||+.++.++++.||||+++.|+. .+.++.|+|+++..+++... +..+| T Consensus 78 ~~----~~~~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y 153 (423) T protein:vir:81 78 RV----REGHLARVCKLANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDY 153 (423) T ss_pred ee----ccchHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEE Confidence 11 11111 12379999986 456677889999999999999975 34677888888877765432 23345 Q ss_pred EEe----CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC----CCc Q lcl|Aclame:pro 142 FVE----NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD----PAQ 213 (340) Q Consensus 142 ~~~----~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~----~~~ 213 (340) .+. .+|..+.++++||||+|.+++.+.++|+||+..++.++.++.++++|..++|+||++|++||+++. +.+ T Consensus 154 ~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l 233 (423) T protein:vir:81 154 IIIESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKW 233 (423) T ss_pred EEEEecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccC Confidence 443 356778899999999999998888899999999999999999999999999999999999998753 358 Q ss_pred CHHHHHHHHHHHHHhc--CcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccc Q lcl|Aclame:pro 214 SATDVESLRDAMRNSK--GLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPEN 291 (340) Q Consensus 214 ~~e~~~~l~~~~~~~~--g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~ 291 (340) ++|+++++++.|++.. |.+|+|++++++ .|++|+|++++++|+||+|++++++++||++|||||+++|+.+ T Consensus 234 ~~e~~~~~~~~~~~~~~~~~~n~g~~~vl~-----~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~-- 306 (423) T protein:vir:81 234 DAESRTRFMANLRASFSPKSSDVGGTLLLE-----DGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLD-- 306 (423) T ss_pred CHHHHHHHHHHHHHHhccccccCCcceecC-----CCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCC-- Confidence 9999999999998753 668999999985 5788999999999999999999999999999999999999854 Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc--------ceeecccccCCCC Q lcl|Aclame:pro 292 IGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME--------VIRFKEYTLDNPE 340 (340) Q Consensus 292 ~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~--------~~rf~~~~l~~~~ 340 (340) .++|+|+|++.+.|+++||+||++.||+ ||.+|..+ .++|+.-.|++.| T Consensus 307 ~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d 364 (423) T protein:vir:81 307 NANYSNVREFRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRAS 364 (423) T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccC Confidence 4689999999999999999999999985 99998643 3677766776666 No 65 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=6.7e-56 Score=323.07 Aligned_cols=316 Identities=14% Similarity=0.092 Sum_probs=228.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeee-ecCchhhcccchHH--hhhh----hhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECI-SNGKWYEPPVSFSG--LAKS----LRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~-~~~~~~~~pv~~~~--l~~~----~r~~~~~~~~i 73 (340) ||==+++........ .....+..+++-. .|.... -....+-.||++.+ ++++ .+.+. ..+ T Consensus 1 m~~f~~~~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g---~~~ 67 (406) T protein:vir:97 1 MSFFQPLGTSKVSYD--DYISSVLAGDVSQ--------KYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNG---DII 67 (406) T ss_pred CccccccCCCCCCcc--hHHHHHhcCCCCc--------ccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCc---ccc Confidence 776655433322111 1122222222211 111110 01112233444421 1111 01111 011 Q ss_pred hhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecC-CceeEEEEEecCcceeeccc--CceEEEEe--CCc Q lcl|Aclame:pro 74 YVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSV-TGQLIKLLTSPAKYTRRGVD--DSVFWFVE--NFT 147 (340) Q Consensus 74 ~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~-~G~~~~L~pl~~~~~~~~~~--~~~~y~~~--~~~ 147 (340) ....-..+....|||++++ +||+.++.++++.||||+++.|+. .|++.+|+|++|..|++..+ +..+|.+. .++ T Consensus 68 ~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~~~~ 147 (406) T protein:vir:97 68 HDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDMLTA 147 (406) T ss_pred ccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEecCCc Confidence 1111112223579999986 566678899999999999999985 68999999999999887543 44566664 467 Q ss_pred eEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHH Q lcl|Aclame:pro 148 QPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRN 227 (340) Q Consensus 148 ~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~ 227 (340) ..+.++++||||||.++ .++++|+||+.+++.+|.++.++++|..++|+||+.|++|+. ++..+++++++++++.|++ T Consensus 148 ~~~~~~~~evih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~-~~~~l~~e~~~~~~~~~~~ 225 (406) T protein:vir:97 148 KQVKCFAHDVIHWKFFS-HDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTM-KGAQLSGDARQRARQEFEK 225 (406) T ss_pred eEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEe-cCCCCCHHHHHHHHHHHHH Confidence 78899999999999764 689999999999999999999999999999999999887765 6678999999999999998 Q ss_pred hcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 228 SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVR 307 (340) Q Consensus 228 ~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~ 307 (340) ..+++|+|+++|+. +|++|+|++++++|+||+|++++++++||++|||||++||+ +++++|++++.+.|++ T Consensus 226 ~~~g~n~g~~~vl~-----~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~----~~~~~~~e~~~~~f~~ 296 (406) T protein:vir:97 226 MREGSVGGSPLVFD-----STMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGV----NSPNQSVAQLMEDYVT 296 (406) T ss_pred HhcccccCceeecC-----CCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCC----CCCcchHHHHHHHHHH Confidence 88888999999984 57899999999999999999999999999999999999985 3467899999999999 Q ss_pred HHHHHHHHHHHH-HHHhhCccc------eeecccccCCCC Q lcl|Aclame:pro 308 NELSPLQDRFRE-VNDWLGMEV------IRFKEYTLDNPE 340 (340) Q Consensus 308 ~~l~P~~~~ie~-ln~~l~~~~------~rf~~~~l~~~~ 340 (340) +||.||+++||+ ||.+|..+- ++|+--.+..++ T Consensus 297 ~~l~P~~~~ie~~l~~kll~~~~~~~~~i~fd~~~~~~~~ 336 (406) T protein:vir:97 297 NDLPFYFDAITSELGLKTLNDKDRRLYHIEFDTRSVTGRN 336 (406) T ss_pred HHHHHHHHHHHHHHhhhhcChhhccceeEEEecCccchhh Confidence 999999999986 999886542 344322222222 No 66 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=1.4e-55 Score=321.39 Aligned_cols=321 Identities=14% Similarity=0.109 Sum_probs=224.1 Q ss_pred CCCC----CCCcccccccCCc---cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcch Q lcl|Aclame:pro 1 MSKR----KPRKAVAMTASAP---QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAV 67 (340) Q Consensus 1 m~~~----~~~~~~~~~~~~~---~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~ 67 (340) |+-= +++.......... .....+++.. ..+... .++ ....+..||++.+ ++++ ++... T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~g-~~v~~~----~al----~~~~v~~~v~~ia~~iA~lp~~~~~~~~ 71 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPSPAEDWAMHG-DRPGAN----SAM----TLGAFYACVTLLADTVASLSIDAYRKKD 71 (409) T ss_pred CchhhhhhcCCCcccccccccccccccchhhccC-cccchh----hhh----ccHHHHHHHHHHHHhhhhCceEEEEecC Confidence 4321 1111111111100 0001111100 000000 000 1112334444321 1111 11000 Q ss_pred hhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEE-ecCCceeEEEEEecCcceeecccC---ceEEE Q lcl|Aclame:pro 68 HHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQR-HSVTGQLIKLLTSPAKYTRRGVDD---SVFWF 142 (340) Q Consensus 68 ~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~-r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~ 142 (340) . .. +....-..+....|||+++. +|++.++.+++++||+|+++. |+..|++++|+|++|.++++.... ..++. T Consensus 72 ~-~~-~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~ 149 (409) T protein:vir:84 72 N-VR-IPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIE 149 (409) T ss_pred C-cc-cccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEE Confidence 0 00 00000111223479999986 556777889999999999985 788899999999999998765332 23333 Q ss_pred EeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHH Q lcl|Aclame:pro 143 VENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLR 222 (340) Q Consensus 143 ~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~ 222 (340) +.......+|+++||||++.+++.+.+||+||+..+..++.++.++++|..++|+||++|+|||++++ .+++++.++++ T Consensus 150 ~~~~~~g~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~l~~e~~~~~~ 228 (409) T protein:vir:84 150 PVYRIDGKVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDA-DLTPDQVKQTQ 228 (409) T ss_pred EEecCCceEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCC-CCCHHHHHHHH Confidence 32222224689999999999888777899999999999999999999999999999999999999765 68999999999 Q ss_pred HHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 223 DAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 223 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) +.|.+.. .|++++++++ .|++|++++.+++|+||+|.+++++++||++|||||++||+.+.++.+++|+|++. T Consensus 229 ~~~~~~~--~n~g~~~vl~-----~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~ 301 (409) T protein:vir:84 229 KQWIQSH--HNRRLPAVMS-----AGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQG 301 (409) T ss_pred HHHHHHh--ccCCCeeecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHH Confidence 9997643 5788888884 57889999999999999999999999999999999999999877767779999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCc-cceeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGM-EVIRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~-~~~rf~~~~l~~~~ 340 (340) ..|+++||.||++.||+ ||++|.. ..++|+.-.|++.| T Consensus 302 ~~f~~~~l~P~~~~ie~~l~~~L~~g~~i~fd~~~l~~~d 341 (409) T protein:vir:84 302 INFVRHTLLPWLRCIEQALDTFLPRGQFVKFNVDGLMRGD 341 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCeEEEechhhhccC Confidence 99999999999999986 9999843 34678777777777 No 67 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=4e-55 Score=318.81 Aligned_cols=317 Identities=12% Similarity=0.165 Sum_probs=225.5 Q ss_pred CCCCCCCccccc----cc--CCccceEEEECCCceeecCcchhhheeeeeec----CchhhcccchHHhhhhhhcch-hh Q lcl|Aclame:pro 1 MSKRKPRKAVAM----TA--SAPQKMEAFTFGEPVPVLDKRDILDYVECISN----GKWYEPPVSFSGLAKSLRSAV-HH 69 (340) Q Consensus 1 m~~~~~~~~~~~----~~--~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~----~~~~~~pv~~~~l~~~~r~~~-~~ 69 (340) |||.+-...... +. ...+.+..|+ ++.+. +|..++.+ ...+..||++. +..+-..+ ++ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~v~~~~a~~~~~v~~~i~~I--a~~ia~lp~~~ 69 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFS-----PWKNK----SFWGVINNTLETNETIFSAITKL--SNSMASLPLKM 69 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccccccc-----cccCc----cccccchhhhhccHHHHHHHHHH--HHhhhhCceeE Confidence 999863322211 11 1111121222 11110 11111111 12233344432 11111111 01 Q ss_pred h--hhhhhhhhhHHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEE Q lcl|Aclame:pro 70 S--SPIYVKRNVLASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFV 143 (340) Q Consensus 70 ~--~~i~~k~n~~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~ 143 (340) . .-.....-..+...+|||+++.. |++.++.+++++||||+++.|+..|++++|+|++|..+.+..+. ..+|.+ T Consensus 70 ~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~ 149 (409) T protein:vir:94 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSI 149 (409) T ss_pred eecccccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEE Confidence 0 00000011112334799999875 55677889999999999999999999999999999988776433 345555 Q ss_pred e-CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHH Q lcl|Aclame:pro 144 E-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLR 222 (340) Q Consensus 144 ~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~ 222 (340) . .++..+.++++||||+|.+++.+++||+||+..+++++.++.++++|+ ++.++..+++|+. +++.+++++.++++ T Consensus 150 ~~~~g~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~~ 226 (409) T protein:vir:94 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVGKEKRQQVL 226 (409) T ss_pred EcCCceEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEe-cCCCCCHHHHHHHH Confidence 4 457778899999999998888899999999999999999999999985 5555655666665 55689999999999 Q ss_pred HHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 223 DAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 223 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) +.|++.. +|++++++++ +|++|+|++++++|+||+|++++++++||++|||||++||+.. +++++|+|++. T Consensus 227 ~~~~~~~--~~~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~~~sn~e~~~ 297 (409) T protein:vir:94 227 EDFKQYY--EENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARS--NTNFAKNEELN 297 (409) T ss_pred HHHHHHh--hcCCCeeecC-----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccHHHHH Confidence 9998765 3677888874 6788999999999999999999999999999999999999743 47899999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) +.|+++||.|+++.||+ ||++|..+ .++|+.-.|++.| T Consensus 298 ~~f~~~~l~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d 343 (409) T protein:vir:94 298 RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccC Confidence 99999999999999985 99998643 2667666666666 No 68 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=8.7e-55 Score=316.96 Aligned_cols=317 Identities=13% Similarity=0.133 Sum_probs=227.7 Q ss_pred CCCCCCCcc--ccc-ccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKA--VAM-TASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~--~~~-~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |+++...+. ... .+........+..+.+.+..+.... +. ...+..||++. +..+-..+.+ +..+. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a---l~----~~~v~~~i~~i--a~~ia~~p~~---v~~~~ 71 (385) T protein:vir:10 4 LTPRNFNKRKAKNMVYPSNPAFFTTTVGGMQLSYVSALSA---LQ----NTNVYSVINRI--ASDVASAHFK---TENTA 71 (385) T ss_pred ccchhcccccccccccccchhhhhhhccccCccccCHHHh---hc----cHHHHHHHHHH--HHHHhhCcee---eeccc Confidence 444421111 111 1111111111222222111121111 11 11122344432 1111111110 00111 Q ss_pred hhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-eEEEE--eCCceEEEEc Q lcl|Aclame:pro 78 NVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-VFWFV--ENFTQPHEFA 153 (340) Q Consensus 78 n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-~~y~~--~~~~~~~~~~ 153 (340) .. ...-+|||+++. +|++.++.+++++||||++++|+ +.+++|+++.+++...+.+ .+|.+ ..++....|+ T Consensus 72 ~~-~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~----~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (385) T protein:vir:10 72 TL-NRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLESNDRPQMVLR 146 (385) T ss_pred hh-hhhhcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCCceEEEEEcCCceEEEEEEcCCceEEEEc Confidence 11 112379999886 55667788999999999999876 4678999998888766554 34444 3556778899 Q ss_pred cccEEEecCCCC--CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 154 PDTVFHLLEPDI--NQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGL 231 (340) Q Consensus 154 ~~dvih~r~~~~--~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~ 231 (340) ++||||||.+++ .++++|+||+.+++.++.++.++++|..++|+||++|+|||++++...++++++++++.|++..++ T Consensus 147 ~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~~ 226 (385) T protein:vir:10 147 QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (385) T ss_pred cccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCc Confidence 999999997543 568899999999999999999999999999999999999999998777899999999999998888 Q ss_pred ccccccccccCCccccccceeeccchhhHHHHH-HHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 232 GNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFF-NIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNEL 310 (340) Q Consensus 232 ~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~-e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l 310 (340) +|++++++++ +|++|+|++.++.|+||+ |.+++++++||++|||||++||+.+.++++++|+|++...| .+|| T Consensus 227 ~n~~~~~vl~-----~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~-~~~l 300 (385) T protein:vir:10 227 DNSGRLMVLP-----DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LANL 300 (385) T ss_pred cccCCccccC-----CCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHH-HHHH Confidence 9999999985 578899999999999985 99999999999999999999998777778899999876655 5699 Q ss_pred HHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 311 SPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 311 ~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) .||++.||+ ||.+|..+.++|+.-.|++.| T Consensus 301 ~P~~~~ie~~l~~~l~~~~~~f~~~~ll~~d 331 (385) T protein:vir:10 301 NSYVNPIVDELRLKMNAPDLELDIKDMLDVD 331 (385) T ss_pred HHHHHHHHHHHHHhhCCceEEeechhhhccC Confidence 999999985 999998777889877887777 No 69 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=2.8e-55 Score=319.63 Aligned_cols=320 Identities=17% Similarity=0.163 Sum_probs=227.8 Q ss_pred CC-----CCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchhh Q lcl|Aclame:pro 1 MS-----KRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHH 69 (340) Q Consensus 1 m~-----~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~ 69 (340) |= +||...+.........-... |+. .+...+..+ +.-.+.. ...+..||++.+ ++++ .+... T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~v-~~~~al~-~~~v~~~i~~Ia~~ia~l~~~~~~~~~-- 73 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNM--FGG-RKTASGERV-SESNSLV-QPDIFACVNVLSDDIAKLPIHTYKRTD-- 73 (416) T ss_pred CccchhcccccCccccCccchhHHHHh--hcC-cccccCcee-chhhhhc-cHHHHHHHHHHHHhhhhCceEEEEecC-- Confidence 32 23322111111000000001 110 000000000 0000000 122334444321 1111 11000 Q ss_pred hhhhhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc---CceEEE Q lcl|Aclame:pro 70 SSPIYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD---DSVFWF 142 (340) Q Consensus 70 ~~~i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~---~~~~y~ 142 (340) .......++. +....|||++++ +|++.++.+++++||||+++.|+..|++.+|+|++|.+|.+..+ +..||. T Consensus 74 -~~~~~~~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~ 152 (416) T protein:vir:12 74 -GGIERKPEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQ 152 (416) T ss_pred -CccccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEEE Confidence 0111111222 223479999986 55677888999999999999999999999999999999886543 345778 Q ss_pred EeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHH Q lcl|Aclame:pro 143 VENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLR 222 (340) Q Consensus 143 ~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~ 222 (340) +..+|..++++++||||+|.++ .++++|+||+.++..++.++.++++|..++|+||++|++||+++. .++++++++++ T Consensus 153 ~~~~g~~~~~~~~eiih~~~~~-~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~e~~~~~~ 230 (416) T protein:vir:12 153 TVLNGKAIELYDYEVLHFKGLS-TDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPA-FLDEKPKENVR 230 (416) T ss_pred EecCCeEEEecCccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCC-CCCHHHHHHHH Confidence 8888888999999999999876 578999999999999999999999999999999999999999875 68999999999 Q ss_pred HHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 223 DAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 223 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) +.|+... |++++++++ +|++|+|++++++|+||+|++++++++||++|||||+++|+.. .++++|+|++. T Consensus 231 ~~~~~~~---~~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~t~sn~e~~~ 300 (416) T protein:vir:12 231 KEWKRVN---KVENIAIID-----YGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELD--KATFSNIEHQS 300 (416) T ss_pred HHHHHHh---cCCCeeecC-----CCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCcc--CCCcccHHHHH Confidence 9998654 457788874 5788999999999999999999999999999999999999754 46899999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) +.|+++||.||+.+||+ ||++|..+ .++|+.-.|++.| T Consensus 301 ~~f~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d 346 (416) T protein:vir:12 301 IEYVRNTLQPWIVNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGD 346 (416) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhcCCceEEeechhhhccC Confidence 99999999999999986 99998643 3566655566556 No 70 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=8.4e-55 Score=317.04 Aligned_cols=316 Identities=12% Similarity=0.165 Sum_probs=223.5 Q ss_pred CC---CCC-----CCccc-ccccCCccceEEEECCCceeecCcchhhheeeeee----cCchhhcccchHHhhhhhhcch Q lcl|Aclame:pro 1 MS---KRK-----PRKAV-AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECIS----NGKWYEPPVSFSGLAKSLRSAV 67 (340) Q Consensus 1 m~---~~~-----~~~~~-~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~----~~~~~~~pv~~~~l~~~~r~~~ 67 (340) |+ |.+ +++.. +......+.+. +|.++.+. ++..++. ....+..||++. +..+-..+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~~~v~~~~a~~~~~v~~~i~~i--a~~iA~lp 69 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLY-----DFSPWKNR----SFWGVINNTLETNETIFSAITKL--SNSMASLP 69 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccc-----cccccCCc----cccccchhhhhccHHHHHHHHHH--HHhHhhCc Confidence 33 311 11100 11111111111 12121111 1111111 112234444432 11111111 Q ss_pred hh-hhhhhhhhhh---HHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ce Q lcl|Aclame:pro 68 HH-SSPIYVKRNV---LASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SV 139 (340) Q Consensus 68 ~~-~~~i~~k~n~---~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~ 139 (340) .| ..--. ..++ .+...+|||+++++ ||+.++.+++++||||+++.|+..|++++|+|++|..|.+..+. .. T Consensus 70 ~~~~~~~~-~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~ 148 (412) T protein:vir:26 70 LKMYEDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSREL 148 (412) T ss_pred eeEeeccc-cccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEE Confidence 11 00000 0111 12334799999875 56788899999999999999999999999999999998876543 24 Q ss_pred EEEEe-CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHH Q lcl|Aclame:pro 140 FWFVE-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDV 218 (340) Q Consensus 140 ~y~~~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~ 218 (340) +|.+. .++..+.|+++||||+|.+++.+++||+||+.++++++.++.+++++. ++.++..++++++ +++.+++++. T Consensus 149 ~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~ 225 (412) T protein:vir:26 149 YYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVGKEKR 225 (412) T ss_pred EEEEEcCCceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEe-cCCCCCHHHH Confidence 55554 456778899999999999888899999999999999999999999984 5666666666665 5567999999 Q ss_pred HHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccH Q lcl|Aclame:pro 219 ESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDV 298 (340) Q Consensus 219 ~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~ 298 (340) +++++.|++.. +|++++++++ +|++|+|++++++|+||+|++++++++||++|||||++||+. .+++++|+ T Consensus 226 ~~~~~~~~~~~--~~~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~--~~~~~sn~ 296 (412) T protein:vir:26 226 QQVLEDFKQYY--EENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNAR--SNTNFAKN 296 (412) T ss_pred HHHHHHHHHHh--hcCCCeeecC-----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCC--CCCCcccH Confidence 99999998755 3667888874 678999999999999999999999999999999999999974 35789999 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 299 EKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 299 e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |++.+.|+++||+||+++||+ ||++|..+ .++|+.-.|++.+ T Consensus 297 e~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~~~d 346 (412) T protein:vir:26 297 EELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 346 (412) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccC Confidence 999999999999999999985 99998543 2677776777666 No 71 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=6e-55 Score=317.85 Aligned_cols=332 Identities=14% Similarity=0.118 Sum_probs=221.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCC--ceee--cCcchhhheeeee----ecCchhhcccchH--Hhhhh----hhc- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGE--PVPV--LDKRDILDYVECI----SNGKWYEPPVSFS--GLAKS----LRS- 65 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~--p~~~--~~~~~~~~~~~~~----~~~~~~~~pv~~~--~l~~~----~r~- 65 (340) |.|.|....-..+. ++.-...|.+.. +..+ +...+.+.+..+. .....+..+|++. .++.+ ++. T Consensus 71 ~kk~~i~~pfkkk~-~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~ 149 (945) T protein:vir:10 71 LKKEKIIVPYNHQE-PPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHI 149 (945) T ss_pred HHhhcccccccccc-cchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEec Confidence 55544322111111 110001111111 0000 0000111111111 1122333344432 11111 110 Q ss_pred -chh-hhhhhhhhhhhHHHh--hhccCCCcHH-----HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc Q lcl|Aclame:pro 66 -AVH-HSSPIYVKRNVLAST--YIPHPLLSRQ-----DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD 136 (340) Q Consensus 66 -~~~-~~~~i~~k~n~~~~~--~~pnp~~~~~-----~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~ 136 (340) +++ -......+.++.+.. -+|||+++.. |++.++.+++++||+|++++|+..|++++|+|++|.+|++..+ T Consensus 150 edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~d 229 (945) T protein:vir:10 150 EDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILS 229 (945) T ss_pred ccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEc Confidence 000 000111222333222 2799998864 3456678999999999999999999999999999999887654 Q ss_pred C--ceE--EEEe-CCceEEEEccccEE-EecCCCCCCCc--ccccchhhhHHHHHHHHHHHHHHHHHHH-ccCCCceEEE Q lcl|Aclame:pro 137 D--SVF--WFVE-NFTQPHEFAPDTVF-HLLEPDINQEI--YGLPEYLSALNSAWLNESATLFRRKYYQ-NGAHAGYIMY 207 (340) Q Consensus 137 ~--~~~--y~~~-~~~~~~~~~~~dvi-h~r~~~~~~~~--~G~sp~~~a~~~i~~~~aa~~~~~~~f~-NG~~p~gil~ 207 (340) . +.+ |... +++....++++|+| |++.+++.+.. ||+||+.++++++..+.++++|..++|. ||++|+|||. T Consensus 230 dDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILs 309 (945) T protein:vir:10 230 EDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILA 309 (945) T ss_pred CCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEE Confidence 3 332 2223 44455678888865 66777665433 6999999999999999999999999995 7899999998 Q ss_pred eCC---------CCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHh Q lcl|Aclame:pro 208 VTD---------PAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAH 278 (340) Q Consensus 208 ~~~---------~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f 278 (340) +++ +.+++++.+++++.|++..++.|.+.+++++ +|++|+|++++++|+||+|++++++++||++| T Consensus 310 vkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLd-----eGmef~pLs~s~~DaQfLEsrkfs~eeIArAF 384 (945) T protein:vir:10 310 IEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSG-----GKFTWIDFKGKRRDMQFKELAEFVARKICAVY 384 (945) T ss_pred ecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHh Confidence 753 4579999999999999887778888888874 57899999999999999999999999999999 Q ss_pred cCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 279 RVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 279 ~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) ||||++||+.+ .++++|+|++...|++++|+||+++||+ ||++|... .++|+.-++.+.+ T Consensus 385 GVPP~lLG~~e--~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg~~i~fdFd~ldl~D~k 451 (945) T protein:vir:10 385 QVSPQDVGILE--GSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFKEDDLEKER 451 (945) T ss_pred CCCHHHcccCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeEEEecchhccCHH Confidence 99999999865 4688999999999999999999999996 99988432 1334433333322 No 72 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=1.5e-54 Score=315.63 Aligned_cols=319 Identities=11% Similarity=0.148 Sum_probs=223.1 Q ss_pred CCCCCCCcc---c-ccccCCccceEEEECCCceeecCcchhhheeeeeec----CchhhcccchHHhhhhhhcch-hhh- Q lcl|Aclame:pro 1 MSKRKPRKA---V-AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISN----GKWYEPPVSFSGLAKSLRSAV-HHS- 70 (340) Q Consensus 1 m~~~~~~~~---~-~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~----~~~~~~pv~~~~l~~~~r~~~-~~~- 70 (340) |+|-+-..+ . -.+..+.+....+ +|.+... . +|..++.+ ...+..||++. +..+-..+ +|. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~---~~~~~~~-~---~~~~v~~~~a~~~~~V~~ci~~i--a~~ia~lp~~~~~ 71 (409) T protein:vir:96 1 MAKENIVTRIKKKLIDNWIDQSASKLY---DFSPWKN-K---SFWGVINNTLETNETIFSAITKL--SNSMASLPLKMYE 71 (409) T ss_pred CccccchhhhhhHHhhhhhcccccccc---ccccccC-c---cccccchhhHhhhHHHHHHHHHH--HHhhhhCceEEee Confidence 888752211 1 1111111111111 1211111 0 11111111 12233444432 11111111 010 Q ss_pred -hhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---eEEEEe- Q lcl|Aclame:pro 71 -SPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---VFWFVE- 144 (340) Q Consensus 71 -~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---~~y~~~- 144 (340) .-........+...+|||+++. +|++.++.+++++||||+++.|+..|++++|+|++|..|.+..+.+ .+|.+. T Consensus 72 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~ 151 (409) T protein:vir:96 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) T ss_pred cccccchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEc Confidence 0000001112234579999886 5567888999999999999999999999999999999988765432 355554 Q ss_pred CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDA 224 (340) Q Consensus 145 ~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~ 224 (340) .+++.+.|+++||||+|.+.+.+++||+||+..+++++.++.+++++. ++.++..+++++. +++.+++++++++++. T Consensus 152 ~~g~~~~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~-~~~~l~~e~~~~~~~~ 228 (409) T protein:vir:96 152 ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLK-YGSNVSTEKRQQVLED 228 (409) T ss_pred CCceEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEe-cCCCCCHHHHHHHHHH Confidence 456788999999999998878899999999999999999999998874 4444544555554 5678999999999999 Q ss_pred HHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH Q lcl|Aclame:pro 225 MRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV 304 (340) Q Consensus 225 ~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~ 304 (340) |++.. +|++++++++ +|++|+|++++++|+||+|++++++++||++|||||++||+.. +++++|+|++.+. T Consensus 229 ~~~~~--~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~~~~s~~e~~~~~ 299 (409) T protein:vir:96 229 FKQYY--EENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNRF 299 (409) T ss_pred HHHHh--hcCCCeeecC-----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CCCcccHHHHHHH Confidence 98765 3677888874 6788999999999999999999999999999999999999744 4689999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) |+++||.|++++||+ ||++|..+ .++|+.-.|++.| T Consensus 300 f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d 343 (409) T protein:vir:96 300 YLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccC Confidence 999999999999985 99998643 2566655666666 No 73 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=1e-54 Score=316.55 Aligned_cols=315 Identities=13% Similarity=0.153 Sum_probs=218.6 Q ss_pred CCCCCCCcccccccCCccceEE-EECC--Ccee-----ecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEA-FTFG--EPVP-----VLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~f~--~p~~-----~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) -.|++++..........+.+.. +++. ..+. .|...+++.|+.+.+. ..-..|+.++ + +. T Consensus 4 f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~-~iA~~p~~~~------~-~~----- 70 (416) T protein:vir:45 4 FYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIAS-DLARMPIRVT------V-NG----- 70 (416) T ss_pred ccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHH-hhccCceEEe------c-Cc----- Confidence 2232222111111110111100 0110 1111 1222223333222111 0111222111 1 00 Q ss_pred hhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--ceEEEEe-- Q lcl|Aclame:pro 73 IYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--SVFWFVE-- 144 (340) Q Consensus 73 i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--~~~y~~~-- 144 (340) .....+. +...+|||+++. +||+.++.+++++||||++++|+..|++++|+|++|..|.+..+. ..+|.+. T Consensus 71 -~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~ 149 (416) T protein:vir:45 71 -QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRI 149 (416) T ss_pred -cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEe Confidence 0011111 223479999886 556778889999999999999999999999999999999876543 3333332 Q ss_pred ---CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHH Q lcl|Aclame:pro 145 ---NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESL 221 (340) Q Consensus 145 ---~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l 221 (340) +.+....++++||||+|.++ .++++|+||+..+++++.++.++++|..++|+||++|+|||++++...++++++++ T Consensus 150 ~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~ 228 (416) T protein:vir:45 150 DSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRA 228 (416) T ss_pred cCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHH Confidence 22345789999999999764 68999999999999999999999999999999999999999998876788999999 Q ss_pred HHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHH Q lcl|Aclame:pro 222 RDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEK 300 (340) Q Consensus 222 ~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~ 300 (340) ++.|++. .|.+|+|++++++ .|++|+|++.+++|+||+|++++++++||++|||||+++|+.. ++ ++.++ T Consensus 229 ~~~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~~~~~ 299 (416) T protein:vir:45 229 REEFHKSFSGTKQAGKVVVLD-----ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSITD 299 (416) T ss_pred HHHHHHHhcCccccCceeecC-----CCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC---CC-ccHHH Confidence 9999765 5678999999984 5788999999999999999999999999999999999999632 22 34566 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCcc----ceeecccccCCCC Q lcl|Aclame:pro 301 VAKVFVRNELSPLQDRFRE-VNDWLGME----VIRFKEYTLDNPE 340 (340) Q Consensus 301 ~~~~f~~~~l~P~~~~ie~-ln~~l~~~----~~rf~~~~l~~~~ 340 (340) +...| .+||+|+++.||+ ||.+|..+ .++|+.-.|+..| T Consensus 300 ~~~~~-~~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D 343 (416) T protein:vir:45 300 ANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVD 343 (416) T ss_pred HHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEEechhhhccC Confidence 66665 5699999999986 99999654 3566555555555 No 74 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=1e-54 Score=316.55 Aligned_cols=315 Identities=13% Similarity=0.153 Sum_probs=218.6 Q ss_pred CCCCCCCcccccccCCccceEE-EECC--Ccee-----ecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEA-FTFG--EPVP-----VLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~-~~f~--~p~~-----~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) -.|++++..........+.+.. +++. ..+. .|...+++.|+.+.+. ..-..|+.++ + +. T Consensus 4 f~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~-~iA~~p~~~~------~-~~----- 70 (416) T protein:vir:81 4 FYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIAS-DLARMPIRVT------V-NG----- 70 (416) T ss_pred ccccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHH-hhccCceEEe------c-Cc----- Confidence 2232222111111110111100 0110 1111 1222223333222111 0111222111 1 00 Q ss_pred hhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--ceEEEEe-- Q lcl|Aclame:pro 73 IYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--SVFWFVE-- 144 (340) Q Consensus 73 i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--~~~y~~~-- 144 (340) .....+. +...+|||+++. +||+.++.+++++||||++++|+..|++++|+|++|..|.+..+. ..+|.+. T Consensus 71 -~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~ 149 (416) T protein:vir:81 71 -QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRI 149 (416) T ss_pred -cccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEe Confidence 0011111 223479999886 556778889999999999999999999999999999999876543 3333332 Q ss_pred ---CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHH Q lcl|Aclame:pro 145 ---NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESL 221 (340) Q Consensus 145 ---~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l 221 (340) +.+....++++||||+|.++ .++++|+||+..+++++.++.++++|..++|+||++|+|||++++...++++++++ T Consensus 150 ~~~~~~~~~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~ 228 (416) T protein:vir:81 150 DSNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRA 228 (416) T ss_pred cCCCceeEEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHH Confidence 22345789999999999764 68999999999999999999999999999999999999999998876788999999 Q ss_pred HHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHH Q lcl|Aclame:pro 222 RDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEK 300 (340) Q Consensus 222 ~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~ 300 (340) ++.|++. .|.+|+|++++++ .|++|+|++.+++|+||+|++++++++||++|||||+++|+.. ++ ++.++ T Consensus 229 ~~~~~~~~~g~~nag~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~---~~-~~~~~ 299 (416) T protein:vir:81 229 REEFHKSFSGTKQAGKVVVLD-----ESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET---AN-MSITD 299 (416) T ss_pred HHHHHHHhcCccccCceeecC-----CCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC---CC-ccHHH Confidence 9999765 5678999999984 5788999999999999999999999999999999999999632 22 34566 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCcc----ceeecccccCCCC Q lcl|Aclame:pro 301 VAKVFVRNELSPLQDRFRE-VNDWLGME----VIRFKEYTLDNPE 340 (340) Q Consensus 301 ~~~~f~~~~l~P~~~~ie~-ln~~l~~~----~~rf~~~~l~~~~ 340 (340) +...| .+||+|+++.||+ ||.+|..+ .++|+.-.|+..| T Consensus 300 ~~~~~-~~~l~P~~~~ie~~ln~~l~~~~~~~~~~f~~~~l~~~D 343 (416) T protein:vir:81 300 ANLDY-LSTLKPYITCVCAELNFKFNDEYVNREFKFDTTEIRVVD 343 (416) T ss_pred HHHHH-HHHHHHHHHHHHHHHhhhccccccCceEEEechhhhccC Confidence 66665 5699999999986 99999654 3566555555555 No 75 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=2.2e-53 Score=309.24 Aligned_cols=319 Identities=10% Similarity=0.083 Sum_probs=225.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCcee--ecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVP--VLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~--~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) |+-=++.....+ +...+....+.+.++.. .......+.. +.......+..||++.+ ..+-.-+.+ + .+.. T Consensus 1 M~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~v~~~i~~ia--~~ia~~p~~---~-~~~~ 72 (386) T protein:vir:48 1 MPIFNITNLATE-SPPISQGGFFDITDPDFLSTLNGSEWVSA-ESALRNSDLFSIINQLS--NDLATVKLT---A-SRKQ 72 (386) T ss_pred Cccccccccccc-ccccccccccccccchhcccccCCceech-hhhhcchHHHHHHHHHH--HhhccCcee---e-ccch Confidence 543322111110 11111222233333311 1110000000 00001112223333311 111111100 1 1222 Q ss_pred hHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeCC----ceEE Q lcl|Aclame:pro 79 VLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVENF----TQPH 150 (340) Q Consensus 79 ~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~~----~~~~ 150 (340) ......+|||+++. +|++.++.++++.||||+++.|+..|++++|+|+++..|++..+. ..+|.+... +... T Consensus 73 ~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~ 152 (386) T protein:vir:48 73 LQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQ 152 (386) T ss_pred hHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEecCcccccee Confidence 33344589999886 556778889999999999999999999999999999999876543 346666432 3567 Q ss_pred EEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 151 EFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKG 230 (340) Q Consensus 151 ~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g 230 (340) .++++||||+|.+++.+++||+||+..+..++.++.++++|+.++|+||++|++||++++ .+++++.+++++.|.+ + T Consensus 153 ~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~-~~~~e~~~~~~~~~~~--~ 229 (386) T protein:vir:48 153 HVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKG-GGLLDFKTKLSRSRQA--M 229 (386) T ss_pred EecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHHHHHHH--h Confidence 899999999999998888999999999999999999999999999999999999999876 5888999999988865 4 Q ss_pred cccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 231 LGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNEL 310 (340) Q Consensus 231 ~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l 310 (340) ..|+|+++++. .|++|+|++.+++|+||+|++++++++||++|||||.++|+ +++++|++++.+.|++.+| T Consensus 230 ~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~----~~~~~~~e~~~~~~~~~~l 300 (386) T protein:vir:48 230 KQMQGGPLVLD-----DLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGG----QGDQQSSLEMSLDLYNKAV 300 (386) T ss_pred hcCCCCceecC-----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC----CCCcccHHHHHHHHHHHHH Confidence 47889999885 57889999999999999999999999999999999999985 3567899999999999999 Q ss_pred HHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 311 SPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 311 ~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) .|+++.||+ ||.+|+.++ .|+...+.+.+ T Consensus 301 ~P~~~~ie~~l~~~l~~~~-~~~~~~~~~~d 330 (386) T protein:vir:48 301 SRYLRPFLSELSQKLSCDV-DADILPAVDPT 330 (386) T ss_pred HHHHHHHHHHHHHhhcchh-hcchhhhhccC Confidence 999999985 999998763 33332333333 No 76 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=1.8e-53 Score=309.70 Aligned_cols=319 Identities=9% Similarity=-0.001 Sum_probs=215.6 Q ss_pred CCCCC--CCcccccccCCccceEEEECCCceeecCcchhhheeeeee----cCchhhcccchHHhhhhhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKRK--PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECIS----NGKWYEPPVSFSGLAKSLRSAVHHSSPIY 74 (340) Q Consensus 1 m~~~~--~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~----~~~~~~~pv~~~~l~~~~r~~~~~~~~i~ 74 (340) |+=-+ ++...+...+..+ ..|..+....+.+...-.....+.. ....+..||++. .+..+.+.-.+ T Consensus 3 m~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~i-----a~~ia~lp~~~- 74 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQ--SYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQL-----SSDLAIVKINA- 74 (392) T ss_pred chhhhhhhcccccccccccc--cccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHH-----HHhhccCceee- Confidence 43321 1111111111111 1122222211111000000000000 011122333321 11111110001 Q ss_pred hhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeCC---- Q lcl|Aclame:pro 75 VKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVENF---- 146 (340) Q Consensus 75 ~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~~---- 146 (340) .++.......+|||+++. +|++.++.+++++||||++++|+..|++++|+|+++.+|.+..+. ..+|.+... T Consensus 75 ~~~~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~ 154 (392) T protein:vir:10 75 EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) T ss_pred ccchhhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccc Confidence 122222334479998886 566778889999999999999999999999999999988776543 345665532 Q ss_pred ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC-cCHHHHHHHHHHH Q lcl|Aclame:pro 147 TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPA-QSATDVESLRDAM 225 (340) Q Consensus 147 ~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~-~~~e~~~~l~~~~ 225 (340) +....++++||||++.+++.+.+||+||+.+++.++.++.++++|+.++|+||++|+|||++++.. .+++++++++ T Consensus 155 ~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~--- 231 (392) T protein:vir:10 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRS--- 231 (392) T ss_pred ceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHH--- Confidence 345789999999999988777799999999999999999999999999999999999999988643 3333333333 Q ss_pred HHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHH Q lcl|Aclame:pro 226 RNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVF 305 (340) Q Consensus 226 ~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f 305 (340) ++..|..|+++++|++ .|++|+|++.+++|+||+|++++++++||++|||||++||+... .++.+++.+.| T Consensus 232 ~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~----~~~~~~~~~~f 302 (392) T protein:vir:10 232 RSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD----QQSSIQQISGM 302 (392) T ss_pred HHHhccccCCCeeecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC----cccHHHHHHHH Confidence 3456778999999884 57889999999999999999999999999999999999996432 23456778899 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 306 VRNELSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 306 ~~~~l~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) +++||.|+++.||+ +|.+|+.+ +.|+...+.+.+ T Consensus 303 ~~~~l~P~~~~ie~~l~~~L~~~-~~~d~~~~~~~d 337 (392) T protein:vir:10 303 YASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPL 337 (392) T ss_pred HHHHHHHHHHHHHHHHHHhcccc-ccccchhhhccC Confidence 99999999999986 99999876 456655555555 No 77 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=1.8e-53 Score=309.70 Aligned_cols=319 Identities=9% Similarity=-0.001 Sum_probs=215.6 Q ss_pred CCCCC--CCcccccccCCccceEEEECCCceeecCcchhhheeeeee----cCchhhcccchHHhhhhhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKRK--PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECIS----NGKWYEPPVSFSGLAKSLRSAVHHSSPIY 74 (340) Q Consensus 1 m~~~~--~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~----~~~~~~~pv~~~~l~~~~r~~~~~~~~i~ 74 (340) |+=-+ ++...+...+..+ ..|..+....+.+...-.....+.. ....+..||++. .+..+.+.-.+ T Consensus 3 m~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~i-----a~~ia~lp~~~- 74 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQ--SYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQL-----SSDLAIVKINA- 74 (392) T ss_pred chhhhhhhcccccccccccc--cccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHH-----HHhhccCceee- Confidence 43321 1111111111111 1122222211111000000000000 011122333321 11111110001 Q ss_pred hhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeCC---- Q lcl|Aclame:pro 75 VKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVENF---- 146 (340) Q Consensus 75 ~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~~---- 146 (340) .++.......+|||+++. +|++.++.+++++||||++++|+..|++++|+|+++.+|.+..+. ..+|.+... T Consensus 75 ~~~~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~ 154 (392) T protein:vir:39 75 EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKI 154 (392) T ss_pred ccchhhhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccc Confidence 122222334479998886 566778889999999999999999999999999999988776543 345665532 Q ss_pred ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC-cCHHHHHHHHHHH Q lcl|Aclame:pro 147 TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPA-QSATDVESLRDAM 225 (340) Q Consensus 147 ~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~-~~~e~~~~l~~~~ 225 (340) +....++++||||++.+++.+.+||+||+.+++.++.++.++++|+.++|+||++|+|||++++.. .+++++++++ T Consensus 155 ~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~--- 231 (392) T protein:vir:39 155 EPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRS--- 231 (392) T ss_pred ceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHH--- Confidence 345789999999999988777799999999999999999999999999999999999999988643 3333333333 Q ss_pred HHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHH Q lcl|Aclame:pro 226 RNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVF 305 (340) Q Consensus 226 ~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f 305 (340) ++..|..|+++++|++ .|++|+|++.+++|+||+|++++++++||++|||||++||+... .++.+++.+.| T Consensus 232 ~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~----~~~~~~~~~~f 302 (392) T protein:vir:39 232 RSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD----QQSSIQQISGM 302 (392) T ss_pred HHHhccccCCCeeecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC----cccHHHHHHHH Confidence 3456778999999884 57889999999999999999999999999999999999996432 23456778899 Q ss_pred HHHHHHHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 306 VRNELSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 306 ~~~~l~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) +++||.|+++.||+ +|.+|+.+ +.|+...+.+.+ T Consensus 303 ~~~~l~P~~~~ie~~l~~~L~~~-~~~d~~~~~~~d 337 (392) T protein:vir:39 303 YASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPL 337 (392) T ss_pred HHHHHHHHHHHHHHHHHHhcccc-ccccchhhhccC Confidence 99999999999986 99999876 456655555555 No 78 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=4.9e-53 Score=307.35 Aligned_cols=317 Identities=12% Similarity=0.135 Sum_probs=226.8 Q ss_pred CCCCC---CCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRK---PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~---~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |+++. +.+..............+..+.+....+.. .++. ...+..||++. +..+...+.+ + .+. T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~l~----~~~v~~~i~~i--a~~ia~~~~~---~-~~~ 70 (383) T protein:vir:10 4 LTPKNFSKRNAKNMVYPSNPAFFTTTVGGMQLSYVSAL---SALQ----NTNVYSVINRI--ASDVSSAHFK---T-ENT 70 (383) T ss_pred ccccccccccccccccccchhhhhhhccCccccccchh---Hhhc----chHHHHHHHHH--HHhhccCcee---e-ccc Confidence 55431 111111111111111111111111111111 0111 11233344432 1111111111 0 011 Q ss_pred hhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-eEEEE--eCCceEEEEc Q lcl|Aclame:pro 78 NVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-VFWFV--ENFTQPHEFA 153 (340) Q Consensus 78 n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-~~y~~--~~~~~~~~~~ 153 (340) ......-.|||+++. +|++.++.++++.||||++++|+ +++++|+++.+++...+.+ .+|.+ ..++...+|+ T Consensus 71 ~~~~ll~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~----~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (383) T protein:vir:10 71 ATLNRLESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLESNDRPKMVLR 146 (383) T ss_pred chhhhhhCCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCcceEEEEEcCCceEEEEEEcCCceEEEEc Confidence 111122379999886 55678888999999999999875 4678888888887665543 33433 4567788999 Q ss_pred cccEEEecCCCC--CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 154 PDTVFHLLEPDI--NQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGL 231 (340) Q Consensus 154 ~~dvih~r~~~~--~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~ 231 (340) ++||||+|.+++ .+++||+||+.++..++.++.++++|+.++|+||++|+|||.+++...++++.+++++.|++..++ T Consensus 147 ~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~~~ 226 (383) T protein:vir:10 147 QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (383) T ss_pred ccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCc Confidence 999999997643 457899999999999999999999999999999999999999988777899999999999998888 Q ss_pred ccccccccccCCccccccceeeccchhhHHHHH-HHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 232 GNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFF-NIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNEL 310 (340) Q Consensus 232 ~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~-e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l 310 (340) +|+++++++. +|++|+|++.+++|+||+ |.+++++++||++|||||++||+.+.++.+++|+|++...|. .+| T Consensus 227 ~n~~~~~vl~-----~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~~-~~l 300 (383) T protein:vir:10 227 DNSGRLMVLP-----DGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYL-ANL 300 (383) T ss_pred cccCCccccC-----CCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHHH-HHH Confidence 9999999985 578899999999999985 999999999999999999999987777788999999987665 699 Q ss_pred HHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 311 SPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 311 ~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) .|+++.||+ +|++|..+.++|+.-.++..| T Consensus 301 ~P~~~~ie~~l~~~l~~~~~~f~~~~l~~~d 331 (383) T protein:vir:10 301 NSYVNPIVDELRLKMNAPDLELDIKDMLDVD 331 (383) T ss_pred HHHHHHHHHHHHHhhCCceEEeechhhhccC Confidence 999999986 999997777888877777777 No 79 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=2.5e-53 Score=309.00 Aligned_cols=311 Identities=11% Similarity=0.034 Sum_probs=216.8 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCc-----------hhhcccchHHhhhhhhcchhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGK-----------WYEPPVSFSGLAKSLRSAVHH 69 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~pv~~~~l~~~~r~~~~~ 69 (340) |+..|++... ..++..+ ..+..+... ++++.+.-. .+. .+..||++. +..+-..+.+ T Consensus 6 ~~~~~~~~~~-~~~~~~~--~~~~~~~~~------~~~~~~~~~-~g~~v~~~~al~~~~v~~~v~~i--a~~ia~lp~~ 73 (392) T protein:vir:74 6 LNFINQTNDP-PEAGSVQ--SYFPDGNDA------QIMESLLGD-NNEWVSARAALRNSDLFSIILQL--SSDLAIVKIN 73 (392) T ss_pred hhhhhcccCc-ccccccc--cccccCchh------hhhhhccCC-CCcccchhhhhcchHHHHHHHHH--HHhhccCcee Confidence 3333332221 1112111 111111111 111111100 111 122233321 1111000000 Q ss_pred hhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeC Q lcl|Aclame:pro 70 SSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVEN 145 (340) Q Consensus 70 ~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~ 145 (340) + .++.......+|||+++. +|++.++.+++++||||++++|+..|++++|+|++|.+|.+..+. ..+|.+.. T Consensus 74 ---~-~~~~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~~~~ 149 (392) T protein:vir:74 74 ---A-EKKKNQGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITF 149 (392) T ss_pred ---e-ccchhhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEe Confidence 1 122222334479999886 567778889999999999999999999999999999988766542 34566654 Q ss_pred C----ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC-cCHHHHHH Q lcl|Aclame:pro 146 F----TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPA-QSATDVES 220 (340) Q Consensus 146 ~----~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~-~~~e~~~~ 220 (340) . +....++++||||++.+++.+.+||+||+.+++.+|.++.++++|+.++|+||++|+|||++++.. .+++++++ T Consensus 150 ~~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~~~~~ 229 (392) T protein:vir:74 150 DDPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKAS 229 (392) T ss_pred cCCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHH Confidence 3 345789999999999988777799999999999999999999999999999999999999998653 33333333 Q ss_pred HHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHH Q lcl|Aclame:pro 221 LRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEK 300 (340) Q Consensus 221 l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~ 300 (340) ++ ++..|..|+|+++|++ +|++|+|++++++|+||+|++++++++||++|||||++||+... + ++.++ T Consensus 230 ~~---~~~~~~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~-~~~~e 297 (392) T protein:vir:74 230 RS---RSFMKRSRSGGPVVLD-----DLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD---Q-QSSIQ 297 (392) T ss_pred HH---HHHhccccCCCeeecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---c-ccHHH Confidence 33 3456778999999984 57889999999999999999999999999999999999997432 2 24467 Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 301 VAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 301 ~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) +.+.|++++|.|+++.||+ +|++|..+ ++|+...+.+.+ T Consensus 298 ~~~~~~~~~l~p~~~~ie~~l~~~l~~~-~~~~~~~~~~~d 337 (392) T protein:vir:74 298 QISGMYASALNRYLRPAISELEYKLSDH-ISVNMRPAIDPL 337 (392) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccch-hcccchhhhcCC Confidence 7889999999999999986 99999876 467766666666 No 80 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=4.5e-53 Score=307.56 Aligned_cols=315 Identities=9% Similarity=0.057 Sum_probs=218.9 Q ss_pred CCCCCCCcccccccC-CccceEEEECCCceeecCcchhh--heeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTAS-APQKMEAFTFGEPVPVLDKRDIL--DYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~-~~~~~~~~~f~~p~~~~~~~~~~--~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |+--++...+...+. ....+..-.|..+ ...+..+. .++. ...+..||++. +..+-..+.+ ..+. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~l~----~~~v~~~i~~i--a~~ia~~~~~----~~~~ 68 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVDSDFLAS--LKGNEWVSAETALR----NSDLFSIINQL--SNDLATVKLI----TSRK 68 (382) T ss_pred CccccccccCCcccccccccchhhhcccc--ccCCcccchHhhhc----cHHHHHHHHHH--HHhhccCcee----eecc Confidence 664433322211111 1000000000000 00000000 0100 11122333321 1111111100 0112 Q ss_pred hhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeCC----ceE Q lcl|Aclame:pro 78 NVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVENF----TQP 149 (340) Q Consensus 78 n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~~----~~~ 149 (340) .......+|||+++. +|++.++.++++.||||++++|+..|++++|+|++|..|++..+. ..+|.+..+ +.. T Consensus 69 ~~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~ 148 (382) T protein:vir:48 69 KLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPK 148 (382) T ss_pred hhhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEecCccccce Confidence 222334579999886 566677889999999999999999999999999999998876532 346666533 456 Q ss_pred EEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhc Q lcl|Aclame:pro 150 HEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSK 229 (340) Q Consensus 150 ~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~ 229 (340) +.|+++||||++.+++.+.++|+||+.+++.++.++.++++|..++|+||++|++||++++ .+++++.+++++.|.. T Consensus 149 ~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~e~~~~~~~~~~~-- 225 (382) T protein:vir:48 149 QHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKG-GGLLDFKTKLSRSRQA-- 225 (382) T ss_pred eEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-CCChHHHHHHHHHHHh-- Confidence 7899999999999988778999999999999999999999999999999999999999876 5788888888888865 Q ss_pred CcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 230 GLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNE 309 (340) Q Consensus 230 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~ 309 (340) +.+|+|+++|+. +|++|+|++.+++|+||+|++++++++||++|||||.+||+.. +.++.+++.+.|++.+ T Consensus 226 ~~~n~g~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~----~~~~~~~~~~~~~~~~ 296 (382) T protein:vir:48 226 MKQMQGGPLVLD-----DLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQG----DQQSSLEMSSDLYSKA 296 (382) T ss_pred hccCCCCeeEcC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC----CcccHHHHHHHHHHHH Confidence 446889998884 5788999999999999999999999999999999999999743 2346788899999999 Q ss_pred HHHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 310 LSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 310 l~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) |.|+++.|++ +|.+|..++ .++.+...+.+ T Consensus 297 l~p~~~~i~~~l~~~l~~~~-~~~~~~~~~~~ 327 (382) T protein:vir:48 297 VSRYLRPFLSELSQKLSCDV-DADIFPAVDPT 327 (382) T ss_pred HHHHHHHHHHHHHHHhcChh-hhhhhhhhccc Confidence 9999999975 999997664 22222222222 No 81 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=5.3e-53 Score=307.19 Aligned_cols=269 Identities=12% Similarity=0.171 Sum_probs=213.0 Q ss_pred hhhcccchHHhhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEec Q lcl|Aclame:pro 49 WYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSP 127 (340) Q Consensus 49 ~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~ 127 (340) .-+.|+.++.-. + ...| .-..+...+|||+++. +||+.++.+++++||||++++|+..|+|++|+|++ T Consensus 1 ia~lp~~~~~~~---~-~~~~-------~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~ 69 (348) T protein:vir:93 1 MASLPLKMYEDY---K-VVNT-------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLN 69 (348) T ss_pred CcccceEeEecC---c-Cccc-------HHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEc Confidence 233454432111 0 0111 1112333579999886 55677788999999999999999999999999999 Q ss_pred CcceeecccCc---eEEEEe-CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 128 AKYTRRGVDDS---VFWFVE-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAG 203 (340) Q Consensus 128 ~~~~~~~~~~~---~~y~~~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~ 203 (340) |..|++..+.+ .+|.+. .++..+.|+++||||+|.+++.++++|+||+.+++.++.++.+++++. ++.++..++ T Consensus 70 ~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~--~~~~~~~~~ 147 (348) T protein:vir:93 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDS 147 (348) T ss_pred CCceEEEEeCCCcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHH--HHhcCCCce Confidence 99988765432 345444 457778899999999999888899999999999999999999999986 333344445 Q ss_pred eEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHH Q lcl|Aclame:pro 204 YIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQ 283 (340) Q Consensus 204 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~ 283 (340) +++. .++.+++|+.+++++.|++.. +|++++++++ .|++|+|++.+++|+||+|++++++++||++|||||. T Consensus 148 ~i~~-~~~~l~~e~~~~~~~~~~~~~--~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~ 219 (348) T protein:vir:93 148 FMLK-YGSNVSTEKRQQVLEDFKQYY--EENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSI 219 (348) T ss_pred eEEe-cCCCCCHHHHHHHHHHHHHHh--hcCCCeeecC-----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 5554 556899999999999998866 4678888874 5788999999999999999999999999999999999 Q ss_pred HcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 284 LMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 284 ~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) +||... +++++|+|++.+.|+++||.|+++.||+ ||++|..+ .++|+.-.|+..+ T Consensus 220 ~lg~~~--~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d 282 (348) T protein:vir:93 220 FLNARS--NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 282 (348) T ss_pred HhCCCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccC Confidence 999643 4689999999999999999999999985 99998643 2667766666666 No 82 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=1.8e-52 Score=304.28 Aligned_cols=313 Identities=12% Similarity=0.056 Sum_probs=222.9 Q ss_pred CCCCCCCcccccccCC--ccceEEEECCC-ceeecCcchhhheeeeeecCchhhcccchHH--hhhhhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASA--PQKMEAFTFGE-PVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKSLRSAVHHSSPIYV 75 (340) Q Consensus 1 m~~~~~~~~~~~~~~~--~~~~~~~~f~~-p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~~r~~~~~~~~i~~ 75 (340) |+-=++..+.....+. +.....|.-+. .+.|.. . .++ ...-+..||++.+ ++++--...+ T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~---~al----~~~~V~~~v~~ia~~ia~~p~~~~~------- 65 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSLNDPDWVNFLTGGEAQKYVSA-D---TAL----KNSDIFSLIMQLSGDLAMVRYTSES------- 65 (397) T ss_pred CcchhhhhcccCcccCCchhhhhhhcCCcCCceech-H---Hhh----ccHHHHHHHHHHHHHHhhCcccccc------- Confidence 7654332211111111 10110111000 000100 0 000 0112333444321 1111110111 Q ss_pred hhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEeC----Cc Q lcl|Aclame:pro 76 KRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVEN----FT 147 (340) Q Consensus 76 k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~~----~~ 147 (340) .........|||+++. +|++.++.+++++||||++++|+..|++++|+|++|.++++..+. ..+|.+.. ++ T Consensus 66 -~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~~~~~~ 144 (397) T protein:vir:38 66 -DRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFDEPAIG 144 (397) T ss_pred -cHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecccccc Confidence 1122234579999886 556788889999999999999999999999999999998876542 34566542 45 Q ss_pred eEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHH Q lcl|Aclame:pro 148 QPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRN 227 (340) Q Consensus 148 ~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~ 227 (340) ....++++||||++.+++.+.+||+||+.++..++.++.++++|+.++|+||++|++||+++. .+++++.+++++.|+. T Consensus 145 ~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~-~~~~e~~~~~~~~~~~ 223 (397) T protein:vir:38 145 YMENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQK-GGLLDAETRIARSKEI 223 (397) T ss_pred ceeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHHHHHHHHH Confidence 567899999999999988888999999999999999999999999999999999999999876 5788999999999999 Q ss_pred hcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 228 SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVR 307 (340) Q Consensus 228 ~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~ 307 (340) .+++.|+++++++. .|++|+|++.++.|+||+|.+++++++||++|||||.+||+... +++|+|++ ..|++ T Consensus 224 ~~~~~n~~~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~---~~~~~e~~-~~~~~ 294 (397) T protein:vir:38 224 SKQIHNSDGPVVID-----ALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGD---QQSSITQI-SGQYA 294 (397) T ss_pred HhcccccCCceecC-----CCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---cccHHHHH-HHHHH Confidence 88889999999984 57899999999999999999999999999999999999997542 34677765 56778 Q ss_pred HHHHHHHHHHHH-HHHhhCccceeecccccCCCC Q lcl|Aclame:pro 308 NELSPLQDRFRE-VNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 308 ~~l~P~~~~ie~-ln~~l~~~~~rf~~~~l~~~~ 340 (340) +||.|++..||+ ||++|..+. .|+--.+.+.+ T Consensus 295 ~~l~P~~~~ie~~ln~~l~~~~-~~~~~~~~~~d 327 (397) T protein:vir:38 295 KSLNRYVQAIVGELNDKLHANI-SANIRFAIDAM 327 (397) T ss_pred HHHHHHHHHHHHHHHHhccChh-cccccccccCC Confidence 999999999985 999998764 23221222333 No 83 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=3.6e-52 Score=302.64 Aligned_cols=331 Identities=13% Similarity=0.117 Sum_probs=228.0 Q ss_pred CCCCC-------------------CC----------cccccccCCccceEEEECCCceeecCcchhhheeeeeecC-chh Q lcl|Aclame:pro 1 MSKRK-------------------PR----------KAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNG-KWY 50 (340) Q Consensus 1 m~~~~-------------------~~----------~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~-~~~ 50 (340) |.+|- |. .+++........+....+.||..+.-.+.-..+......+ +++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~ 80 (648) T protein:vir:79 1 MARKVWGRGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFE 80 (648) T ss_pred CccchhcchhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccc Confidence 33331 10 0111111222233345667876654443222333222233 578 Q ss_pred hcccchHHhhhhhhcchhhhhhhhhhhhhHH---------------------HhhhccCCCcH-HHHHHHHHHHHHhCCe Q lcl|Aclame:pro 51 EPPVSFSGLAKSLRSAVHHSSPIYVKRNVLA---------------------STYIPHPLLSR-QDFSRFALDYLVFGNA 108 (340) Q Consensus 51 ~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~---------------------~~~~pnp~~~~-~~~~~~~~~~ll~Gna 108 (340) +||+++..|++++..+++|.+||...+...+ ....||+.++. +||+.++.+++++||| T Consensus 81 epp~d~~~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNA 160 (648) T protein:vir:79 81 EPEFDFNEITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNV 160 (648) T ss_pred cCCcCHHHHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCe Confidence 9999999999999999999999976654433 23478988775 6788899999999999 Q ss_pred eEEEEecCCce---------------eEEEEEecCcceeecccCc---eEEEE--eCCceEEEEccccEEEecCCCCCCC Q lcl|Aclame:pro 109 FLEQRHSVTGQ---------------LIKLLTSPAKYTRRGVDDS---VFWFV--ENFTQPHEFAPDTVFHLLEPDINQE 168 (340) Q Consensus 109 y~~i~r~~~G~---------------~~~L~pl~~~~~~~~~~~~---~~y~~--~~~~~~~~~~~~dvih~r~~~~~~~ 168 (340) |++++|+..|. +.+|+|++|.++++..+.. .+|.+ .+++..+.|+++||||||.+.+.++ T Consensus 161 YveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~ 240 (648) T protein:vir:79 161 VIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKGR 240 (648) T ss_pred EEEEEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCCCC Confidence 99999998883 4789999999888765432 12333 3455677899999999998877899 Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccc Q lcl|Aclame:pro 169 IYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDG 248 (340) Q Consensus 169 ~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g 248 (340) +||+||+.+++++|.++.++++|..+||+||++|++||+++.+....+..+++++.+++...+ ..+...+.+.+. T Consensus 241 ~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~-----~~i~gg~v~~~~ 315 (648) T protein:vir:79 241 AFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVEN-----MDVEGGMVTTER 315 (648) T ss_pred ceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhccc-----ccccccccccce Confidence 999999999999999999999999999999999999999864444455555555666543322 223322223445 Q ss_pred cceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-----HHHh Q lcl|Aclame:pro 249 IKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-----VNDW 323 (340) Q Consensus 249 ~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-----ln~~ 323 (340) +.+.+.+ +++|+||++++++++++||++|||||++||+.. ++++++.+++...| ..++.|++..++. ++.. T Consensus 316 ~~i~~~~-s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~--~ss~stae~~~~~~-~~~i~~l~~~i~~~le~~~~~~ 391 (648) T protein:vir:79 316 VNISSIA-SNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGG--TASRSTGDNLSSDF-KDRIKALQKVMATFINEFMVKE 391 (648) T ss_pred eeccccC-CHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCC--CccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH Confidence 5555443 568999999999999999999999999999854 45777777766555 6678777765532 2222 Q ss_pred h----------Cc-cceeecccccCCCC Q lcl|Aclame:pro 324 L----------GM-EVIRFKEYTLDNPE 340 (340) Q Consensus 324 l----------~~-~~~rf~~~~l~~~~ 340 (340) + .. ..++|+--+|+..| T Consensus 392 ll~e~~l~~~l~~d~~ieF~~~~Llr~D 419 (648) T protein:vir:79 392 ILMEGGFDPVLNPDDKVEFRFNEIDMDS 419 (648) T ss_pred HhhhhhccccccccceEEEeecccchhh Confidence 2 11 12455533455555 No 84 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=2.7e-52 Score=303.30 Aligned_cols=325 Identities=13% Similarity=0.118 Sum_probs=225.2 Q ss_pred CCCCCCCccc-----ccccCCccceEEEECCCceeecCcchhhheee-----eeecCchhhcccchHH--hhhh----hh Q lcl|Aclame:pro 1 MSKRKPRKAV-----AMTASAPQKMEAFTFGEPVPVLDKRDILDYVE-----CISNGKWYEPPVSFSG--LAKS----LR 64 (340) Q Consensus 1 m~~~~~~~~~-----~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~-----~~~~~~~~~~pv~~~~--l~~~----~r 64 (340) ||-+||-.-. ..+..............|.++++....+..+. ......++..||++.+ ++++ .+ T Consensus 4 ~~~~~~~~~m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~ 83 (413) T protein:vir:96 4 VSEIRKDKNLKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELISDGYTKLSDSPEVRMAVDCIADLVSNMTIQLMQ 83 (413) T ss_pred cchhhhhhcCCccccCCCcchhhhhhccccccccccccchhhHhhhccchhHHHhhchHHHHHHHHHHHhhccCceEEEE Confidence 6666532110 00011111111122333433332222111111 1122344555665532 1111 11 Q ss_pred cchhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCc-eeEEEEEecCcceeecccCce-EE Q lcl|Aclame:pro 65 SAVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTG-QLIKLLTSPAKYTRRGVDDSV-FW 141 (340) Q Consensus 65 ~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G-~~~~L~pl~~~~~~~~~~~~~-~y 141 (340) .... +..........+....||++++. +|++.++.+++++||||++++|+..| .+++|+|++|..|++..+.+. +| T Consensus 84 ~~~~-~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~~~~y 162 (413) T protein:vir:96 84 NGET-GDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDDDLDY 162 (413) T ss_pred ecCC-CccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcCCeEEE Confidence 1100 00000111111233479999885 56778889999999999999999887 578999999999887766554 56 Q ss_pred EEeCCceEEEEccccEEEec-CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHH Q lcl|Aclame:pro 142 FVENFTQPHEFAPDTVFHLL-EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVES 220 (340) Q Consensus 142 ~~~~~~~~~~~~~~dvih~r-~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~ 220 (340) .+..++. +++++|||||| .+++.++++|+||+.++..++.++.++++|..++|+||++|+|||++++ .+++++.++ T Consensus 163 ~~~~~~~--~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~-~l~~e~~~~ 239 (413) T protein:vir:96 163 SITFDNK--EYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDS-DSDELSDEE 239 (413) T ss_pred EEeecCc--EEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCC-CCCHHHHHH Confidence 6655553 67899999998 4677789999999999999999999999999999999999999999765 689999999 Q ss_pred HHHHHHHh-cCcccccccccccCCccccccceeec-cchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccH Q lcl|Aclame:pro 221 LRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPL-SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDV 298 (340) Q Consensus 221 l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl-~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~ 298 (340) +++.|++. .|..|+|+++++..++. ++..+ +++++|+||+|++++++++||++|||||.+||+. ++. T Consensus 240 ~~~~~~~~~~g~~n~g~~~vl~~~~~----~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~-------~~~ 308 (413) T protein:vir:96 240 GRENFEEMYLKRKEAGKPWIIPEGMV----NVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG-------TYN 308 (413) T ss_pred HHHHHHHHhcCccccCceeeecCCcc----cccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-------cch Confidence 99999875 56789999999865442 34444 3468899999999999999999999999999852 234 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhCcc--ceeecccccCCCC Q lcl|Aclame:pro 299 EKVAKVFVRNELSPLQDRFRE-VNDWLGME--VIRFKEYTLDNPE 340 (340) Q Consensus 299 e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~--~~rf~~~~l~~~~ 340 (340) +++...|+++||+||++.||+ ||.+|..+ .++|+.-.|++.+ T Consensus 309 ~~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~fd~~~ll~~d 353 (413) T protein:vir:96 309 KDEFNNFINTKIMSIAQVIQQTYNKLIVEEDMYFSLNPRSLYNYS 353 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEechhhhccC Confidence 888899999999999999986 99999554 3566655666666 No 85 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=3.5e-52 Score=302.65 Aligned_cols=323 Identities=10% Similarity=0.081 Sum_probs=219.5 Q ss_pred CCCCCCCcc-cccccCCccceEEEECCCceeecCcchhhheeee--eecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKA-VAMTASAPQKMEAFTFGEPVPVLDKRDILDYVEC--ISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~-~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~--~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |.-=+++.. ......... ..+...+|... +...--.|+.. +.....+..||++. +..+-..+.+ + .+. T Consensus 1 Mglf~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~v~~~~al~~~~V~~~i~~I--a~~ia~l~~~---~-~~~ 71 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQD--SFFDITDPEFL-DALNGSEWVSAETALKNSDLFSIISQL--SNDLATAKIT---T-SRK 71 (384) T ss_pred CccccccccCcccccccch--hhccccchhhc-ccccCCceechhhhhccHHHHHHHHHH--HHHHhhCcee---e-ecc Confidence 655322211 111111111 11222222110 00000011100 00011122233321 1111111110 1 112 Q ss_pred hhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc---CceEEEEeC----CceE Q lcl|Aclame:pro 78 NVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD---DSVFWFVEN----FTQP 149 (340) Q Consensus 78 n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~---~~~~y~~~~----~~~~ 149 (340) ........|||+++. +|++.++.++++.||||++++|+..|++++|+|++|.+|++..+ +..+|.+.. .+.. T Consensus 72 ~~~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~ 151 (384) T protein:vir:49 72 QLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPRIPPK 151 (384) T ss_pred hhhhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccccce Confidence 222234579999886 55667788999999999999999999999999999999987543 334666653 2456 Q ss_pred EEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhc Q lcl|Aclame:pro 150 HEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSK 229 (340) Q Consensus 150 ~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~ 229 (340) +.++++||||+|.+++.++++|+||+.++..++.++.++++|..++|+||++|++||++++...+++.. ++..+... T Consensus 152 ~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~---~~~~~~~~ 228 (384) T protein:vir:49 152 QHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKT---KQSRSRQA 228 (384) T ss_pred eEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHH---HHHHHHHh Confidence 789999999999998887899999999999999999999999999999999999999998765444333 33334456 Q ss_pred CcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 230 GLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNE 309 (340) Q Consensus 230 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~ 309 (340) |.+|++++++++ +|++|+|++++++|+||+|.+++++++||++|||||++||+...+++++++++++...|++.+ T Consensus 229 ~~~n~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~ 303 (384) T protein:vir:49 229 MKQMQGGPLVLD-----DLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRF 303 (384) T ss_pred cccCCccceecC-----CCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHH Confidence 788999999985 578899999999999999999999999999999999999987767788899999999999999 Q ss_pred HHHHHHHHHH-HHHhhCccc----------eeecccccCCCC Q lcl|Aclame:pro 310 LSPLQDRFRE-VNDWLGMEV----------IRFKEYTLDNPE 340 (340) Q Consensus 310 l~P~~~~ie~-ln~~l~~~~----------~rf~~~~l~~~~ 340 (340) |.||...|++ |+.+|..+. +.|+--.|.+.+ T Consensus 304 l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (384) T protein:vir:49 304 LRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTG 345 (384) T ss_pred HHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcC Confidence 9999999985 888774332 111111122222 No 86 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=6.1e-51 Score=295.87 Aligned_cols=318 Identities=11% Similarity=0.082 Sum_probs=217.0 Q ss_pred CCCCCCCcccccccCCccceEEEECCCce---eecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPV---PVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~---~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |.--++..+..++.+... -..+.+.++. ++..+..+.. +.+.....+..||++. +..+-..+.+ ..+. T Consensus 1 M~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~--~~al~~~~v~~~i~~i--a~~ia~~p~~----~~~~ 71 (386) T protein:vir:49 1 MPIFNITNLATESPPINQ-ESFFDIADSDFLASLNSSEWVSA--ENALKNSDLFSIISQL--SNDLATAKIT----TSRK 71 (386) T ss_pred CchhhhhccCCCCcccch-hhhhhhhhccccccccCCceech--hhhhccHHHHHHHHHH--HHHhhhCcee----eccc Confidence 443322211111110000 0001111110 0001100000 0000011122233321 1111111100 0111 Q ss_pred hhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---ceEEEEe----CCceE Q lcl|Aclame:pro 78 NVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---SVFWFVE----NFTQP 149 (340) Q Consensus 78 n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~~~y~~~----~~~~~ 149 (340) .......+|||+++. +|++.++.++++.||||++++|+..|++++|+|++|..|++..+. ..+|.+. .++.. T Consensus 72 ~~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~ 151 (386) T protein:vir:49 72 QLQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPHIAPK 151 (386) T ss_pred hhhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEEcCccccce Confidence 222234579998876 566788889999999999999999999999999999998876543 3456554 23567 Q ss_pred EEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhc Q lcl|Aclame:pro 150 HEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSK 229 (340) Q Consensus 150 ~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~ 229 (340) ..|+++||||+|.+++.++++|+||+.+++.++.++.++++|+.++|+||++|++||++++ .+++++.+++++.|+. T Consensus 152 ~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~-~~~~~~~~~~~~~~~~-- 228 (386) T protein:vir:49 152 QHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKG-GGLLDFKTKVSRSRQA-- 228 (386) T ss_pred eEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCC-CCChHHHHHHHHHHHH-- Confidence 7899999999999988888999999999999999999999999999999999999999876 5777888888888865 Q ss_pred CcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 230 GLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNE 309 (340) Q Consensus 230 g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~ 309 (340) +.+|+|++++++ .|++|+|++.+++|+||+|++++++++||++|||||++||+... +++|.++ .+.|+..+ T Consensus 229 ~~~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~---~~~~~~~-~~~~~~~~ 299 (386) T protein:vir:49 229 MKQMQGGPLVLD-----DLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGD---QQSSLEM-IYNIYFKS 299 (386) T ss_pred hccCCCCceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC---ccchHHH-HHHHHHHH Confidence 447899999984 57889999999999999999999999999999999999996432 3455444 46788899 Q ss_pred HHHHHHHHH-HHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 310 LSPLQDRFR-EVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 310 l~P~~~~ie-~ln~~l~~~~~rf~~~~l~~~~ 340 (340) |.|+++.|+ +|+.+|+.++ .|+.-.+++.+ T Consensus 300 i~~~l~~i~~~~~~~l~~~~-~~~~~~~~~~d 330 (386) T protein:vir:49 300 VSRYLRPFVSEMSKKLSCEV-DVDISPAVDPT 330 (386) T ss_pred HHHHHHHHHHHHHHHhcchh-cccchhhhccC Confidence 999999987 5999998763 55544444444 No 87 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=1.2e-50 Score=294.37 Aligned_cols=268 Identities=12% Similarity=0.149 Sum_probs=211.4 Q ss_pred hhhcccchHHhhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEec Q lcl|Aclame:pro 49 WYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSP 127 (340) Q Consensus 49 ~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~ 127 (340) .-+.|+..+... +... | ....+....|||+++. +|++.++.++++.||||++++|+..|++++|+|++ T Consensus 1 ia~l~~~~~~~~---~~~~-~-------~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~ 69 (278) T protein:vir:78 1 MASLPLKMYEDY---KVVN-T-------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLN 69 (278) T ss_pred CccceeEEEecC---cccc-c-------HHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEEC Confidence 122333322100 0000 1 1111223479999886 56677788999999999999999999999999999 Q ss_pred CcceeecccCc---eEEEEe-CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 128 AKYTRRGVDDS---VFWFVE-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAG 203 (340) Q Consensus 128 ~~~~~~~~~~~---~~y~~~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~ 203 (340) |.+|++..+.+ .+|.+. .+|....++++||||+|.+++.++++|+||+.++..++.++.++++++...+.|+ |+ T Consensus 70 ~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 147 (278) T protein:vir:78 70 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DS 147 (278) T ss_pred CceeEEEEcCCCceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcCC--Cc Confidence 99998775543 355554 4567789999999999999889999999999999999999999999976666554 78 Q ss_pred eEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHH Q lcl|Aclame:pro 204 YIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQ 283 (340) Q Consensus 204 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~ 283 (340) ++++.+ +.+++|+.+++++.|++.. +|+|++++++ +|++|++++++++|+||+|.+++++++||++|||||. T Consensus 148 ~i~~~~-~~l~~e~~~~~~~~~~~~~--~~~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~ 219 (278) T protein:vir:78 148 FMLKYG-SNVGKEKRQQVLEDFKQYY--EENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSV 219 (278) T ss_pred EEEEeC-CCCCHHHHHHHHHHHHHHh--ccCCCceecC-----CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 888754 5799999999999998755 4678888874 5788999999999999999999999999999999999 Q ss_pred HcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccce----eecccccCCC Q lcl|Aclame:pro 284 LMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVI----RFKEYTLDNP 339 (340) Q Consensus 284 ~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~----rf~~~~l~~~ 339 (340) ++|+.. .++++|++++.+.|+++||+|+++.|++ ||.+|..+.- .|-.|+++.. T Consensus 220 ~lg~~~--~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 220 FLNARS--NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred HhCCCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 999754 4689999999999999999999999985 9999865321 1223444444 No 88 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=1.8e-51 Score=298.78 Aligned_cols=315 Identities=15% Similarity=0.173 Sum_probs=209.9 Q ss_pred CCCC-----CCCcccccccCCccceEEEECCCcee----ecCcchhhheeeeeecCchhhcccchHHhhhhhhcc-hhhh Q lcl|Aclame:pro 1 MSKR-----KPRKAVAMTASAPQKMEAFTFGEPVP----VLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA-VHHS 70 (340) Q Consensus 1 m~~~-----~~~~~~~~~~~~~~~~~~~~f~~p~~----~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~-~~~~ 70 (340) |--. +..|+...-. ....++...-..|.+ .+....+..|+.+.. +..-+.|+.++. +.. ...+ T Consensus 1 mg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~~~v~~cv~~Ia-~~ia~~p~~v~~-----~~~~~~~~ 73 (403) T protein:vir:10 1 MGFKSWITEKLNPGQRIIR-DMEPVSHRTNRKPFTTGQAYSKIEILNRTANMVI-DSAAECSYTVGD-----KYNIVTYA 73 (403) T ss_pred Ccchhhhhhccchhhhhhh-cccccccccCCcccccHHHHHHHHHHHHHHHHHH-HHHhhCceeEee-----cccccccc Confidence 2111 1111111100 000111111111111 011111112211111 011112221110 000 0001 Q ss_pred hhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceE Q lcl|Aclame:pro 71 SPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQP 149 (340) Q Consensus 71 ~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~ 149 (340) ..+....-..+...+|||+++. +|++.++.+++++||||+++.+ ..|+++|+..+.+..+.+..+.....+.. T Consensus 74 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~------~~l~~l~~~~~~v~~~~~~~~~~~~~~~~ 147 (403) T protein:vir:10 74 NGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG------TSLYHVPAALMQVEADANKFIKKFIFNNQ 147 (403) T ss_pred cccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC------ceeEeecCcceEEEEcCCceEEEEEecCc Confidence 1111122222344579999986 5666778899999999998753 25899999888776554432222222334 Q ss_pred EEEccccEEEecCCC----CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 150 HEFAPDTVFHLLEPD----INQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAM 225 (340) Q Consensus 150 ~~~~~~dvih~r~~~----~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~ 225 (340) ..+.++||+|++..+ +.++++|+||+.++++++.++.++++|..++|+||++|++||+++ ..++++++++++++| T Consensus 148 ~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l~~e~~~~~~~~~ 226 (403) T protein:vir:10 148 INYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETD-EILNKKLRERKQEEL 226 (403) T ss_pred eeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeC-CCCCHHHHHHHHHHH Confidence 678899999999654 358999999999999999999999999999999999999999976 479999999999999 Q ss_pred HHh-cCcccccccccccCCccccccceeeccc--hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 226 RNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSE--VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 226 ~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~--~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) ++. .|.+|+|++++++ +|++|+|+++ +++|+||+|.+++++++||++|||||++||. ++++|+|++. T Consensus 227 ~~~~~g~~n~g~~~vl~-----~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-----~~~sn~e~~~ 296 (403) T protein:vir:10 227 QLDYNPSTGQSSVLILD-----GGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDG-----GNNANIRPNI 296 (403) T ss_pred HHHhCCcccCcceeecC-----CCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCC-----CCCcCHHHHH Confidence 875 5778999999985 5788999986 5779999999999999999999999999974 4678999999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCccceeeccc--ccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGMEVIRFKEY--TLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~~~--~l~~~~ 340 (340) +.|+++||.||+++||+ ||.+|+.+ ++|+.- .+.+.| T Consensus 297 ~~f~~~tl~P~~~~ie~~l~~~L~~~-~~~d~~~~~~l~~D 336 (403) T protein:vir:10 297 ELFYYMTIIPMLNKLTSSLTFFFGYK-ITPNTKEVAALTPD 336 (403) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCce-eeeccchhhhcccC Confidence 99999999999999986 99999765 455432 334444 No 89 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=1.3e-48 Score=283.09 Aligned_cols=318 Identities=14% Similarity=0.093 Sum_probs=219.1 Q ss_pred CCCC---CCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh-------h Q lcl|Aclame:pro 1 MSKR---KPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH-------S 70 (340) Q Consensus 1 m~~~---~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~-------~ 70 (340) |.-- ++..........+.....|.-+......+. .+- .+....++..||++.+ ..+-..+.+ + T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~v~~~i~~ia--~~ia~~~~~~~~~~~~~ 73 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRADTGYVGLFMSGEDVSFLVP----GYV-RLSDNPEVRMAVHKIA--DLISSMTIYLMQNTEDG 73 (406) T ss_pred CcchhhhccccccccccccchhhhhhccCcccCcccc----CHH-HHhhcHHHHHHHHHHH--HhhccCceEEEEecCCc Confidence 4433 211111111222221222221211111000 000 0112234455555422 111111111 0 Q ss_pred hhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCe--eEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCc Q lcl|Aclame:pro 71 SPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNA--FLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFT 147 (340) Q Consensus 71 ~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gna--y~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~ 147 (340) ......+........|||+++. +|++.++.++++.||+ |+.+.|+..|++++|+|++|.+|++..+.+. |.+..++ T Consensus 74 ~~~~~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~-~~~~~~~ 152 (406) T protein:vir:95 74 DIRIRNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDG-YQVLYGG 152 (406) T ss_pred ceeecchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCe-EEEEecc Confidence 0000111122234589999886 5667788899998665 6678899999999999999999999887765 4445454 Q ss_pred eEEEEccccEEEecC-CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHH Q lcl|Aclame:pro 148 QPHEFAPDTVFHLLE-PDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMR 226 (340) Q Consensus 148 ~~~~~~~~dvih~r~-~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~ 226 (340) + .|+++||||++. +.+.++++|+||+..+..++.++.++++|+.++|+||++|++||++++ .+++++.++++++|+ T Consensus 153 ~--~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~-~l~~e~~~~~~~~~~ 229 (406) T protein:vir:95 153 Q--TFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDA-ATAELSSEEGRNAVF 229 (406) T ss_pred E--EEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCCHHHHHHHHHHHH Confidence 3 689999999995 567789999999999999999999999999999999999999999775 689999999999997 Q ss_pred H-hcCcccccccccccCCccccccceeec-cchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH Q lcl|Aclame:pro 227 N-SKGLGNFKNLFFYSPNGKPDGIKIVPL-SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV 304 (340) Q Consensus 227 ~-~~g~~n~~~~~vl~~~~~~~g~~~~pl-~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~ 304 (340) + +.|..|+++++|+..++ .+++++ .++++|+||+|.+++++++||++|||||++||+. ++.+++... T Consensus 230 ~~~~g~~n~~~~~v~~~~~----~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-------~~~~~~~~~ 298 (406) T protein:vir:95 230 KKYLQATEAGQPWIIPAEL----LEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIG-------EFNRDEYNN 298 (406) T ss_pred HHhccccccCCceeecCCC----ccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-------CchHHHHHH Confidence 6 56789999998886543 345554 3578999999999999999999999999999852 245888899 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCcc---ceeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFRE-VNDWLGME---VIRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~-ln~~l~~~---~~rf~~~~l~~~~ 340 (340) |+++||.||+++||+ ||.+|..+ .++|+.-.|+..| T Consensus 299 ~~~~~l~P~~~~ie~~l~~~l~~~~~~~~~fd~~~l~~~d 338 (406) T protein:vir:95 299 FINSTILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYD 338 (406) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcEEEeechhhhcCC Confidence 999999999999985 99988644 2556555555555 No 90 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=5.5e-48 Score=279.67 Aligned_cols=318 Identities=14% Similarity=0.120 Sum_probs=215.2 Q ss_pred CCCCC--CCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchhhhhh Q lcl|Aclame:pro 1 MSKRK--PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHHSSP 72 (340) Q Consensus 1 m~~~~--~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~~~ 72 (340) |.--. +++..+... +....|..+.....+... .|... .....+..||++.+ ++.+ ++.... +.. T Consensus 1 Mg~~~~f~~k~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~-g~~ 72 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPT---NAISWFLTQEAYDTLAIP---GYTRL-SDNPEVRMAVHKIAELISSMTIHLMQNTDN-GDI 72 (403) T ss_pred Cccccccccccccccc---chhhhhcccccccccccc---hhhhh-hhhHHHHHHHHHHHHhhhhCceEEEEecCC-cee Confidence 66221 111111111 112223222221111111 01111 11223445555421 1111 111100 000 Q ss_pred hhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHH--hCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeCCceE Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSR-QDFSRFALDYLV--FGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENFTQP 149 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll--~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~~~ 149 (340) ....+-..+....|||++++ +||+.++.++++ .||||+++.|+..|++++|+|++|..|++..+.+.+ .+...+ T Consensus 73 ~~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~-~~~y~~-- 149 (403) T protein:vir:80 73 RIKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGY-QIWYQG-- 149 (403) T ss_pred ecCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCce-EEEEee-- Confidence 00111112233479999886 566777889887 488999999999999999999999999887665543 222222 Q ss_pred EEEccccEEEec-CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHH- Q lcl|Aclame:pro 150 HEFAPDTVFHLL-EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRN- 227 (340) Q Consensus 150 ~~~~~~dvih~r-~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~- 227 (340) ..++++||||++ .+++.++++|+||+..++.++.+..++++|..++|+||++|++||++++ .+++++.+++++.|.+ T Consensus 150 ~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~-~~~~~~~~~~~~~~~~~ 228 (403) T protein:vir:80 150 KAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDA-ATAELSSEEGRNAVFKK 228 (403) T ss_pred cccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC-CCChHHHHHHHHHHHHH Confidence 358899999998 4678889999999999999999999999999999999999999999875 5788888888888854 Q ss_pred hcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHH Q lcl|Aclame:pro 228 SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVR 307 (340) Q Consensus 228 ~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~ 307 (340) +.|..|+++++++..++ .+..+++|+ +++|+||+|.+++++++||++|||||++||+.+. .++....|++ T Consensus 229 ~~~~~~~g~~~~~~~~~-~~~~~~~~l--~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-------~~~~~~~f~~ 298 (403) T protein:vir:80 229 YLEASEAGQPWIIPAEL-LDVEQVKPL--SLKDLAIHETVELDKRTVAGIFGVPAFLLGVGKY-------DKDEYNNFIN 298 (403) T ss_pred HhhhhhcCCeeeecccc-cccceeccC--CHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCc-------cHHHHHHHHH Confidence 56778999988875433 244567776 4789999999999999999999999999986322 2455567999 Q ss_pred HHHHHHHHHHHH-HHHhhCcc---ceeecccccCCCC Q lcl|Aclame:pro 308 NELSPLQDRFRE-VNDWLGME---VIRFKEYTLDNPE 340 (340) Q Consensus 308 ~~l~P~~~~ie~-ln~~l~~~---~~rf~~~~l~~~~ 340 (340) +||+|++++||+ ||++|..+ .++|+.-.|+..| T Consensus 299 ~~l~P~~~~ie~~l~~kll~~~~~~~~f~~~~ll~~d 335 (403) T protein:vir:80 299 STILPIAKGIEQELTRKLLISPDLYFKFNPRSLYAYD 335 (403) T ss_pred HHHHHHHHHHHHHHHHhccCCCCcEEEeechhhhccC Confidence 999999999995 99988543 3567666676666 No 91 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=5.6e-48 Score=279.62 Aligned_cols=306 Identities=13% Similarity=0.077 Sum_probs=205.0 Q ss_pred CCCC---CCCcccccccCCccceEEEECCCc-----eeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcc Q lcl|Aclame:pro 1 MSKR---KPRKAVAMTASAPQKMEAFTFGEP-----VPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSA 66 (340) Q Consensus 1 m~~~---~~~~~~~~~~~~~~~~~~~~f~~p-----~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~ 66 (340) |.-. +++... .+.......- .|+.. ++|.. ...+. ...+..+|++.+ ++++ .+.+ T Consensus 1 MGl~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~vt~-~~al~-------~~~v~~~i~~Ia~~iA~lp~~v~~~~ 69 (394) T protein:vir:62 1 MGLRDRFSNYLFK--KAEKRGYLDN-VLGKSIRYSGVYVTD-SNILQ-------SSDVYELLQDISNQMVLADIVVEDEF 69 (394) T ss_pred CchhhhhhhhccC--CCCchhhhhh-hhhcccccCccccCh-hhhhc-------cHHHHHHHHHHHHhhcccceEEEcCC Confidence 5422 111000 0001000000 01111 11111 00100 011222222211 1111 1111 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeC Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVEN 145 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~ 145 (340) . ..+....... ....|||++++ +|++.++.+++++||+|+++.++..|.+. .+.+..+...++.+.. T Consensus 70 g---~~~~~~~~~~-Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~ 137 (394) T protein:vir:62 70 G---NEIKDDIALQ-ILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIHLAS--------NVFTELDDNLVEHFNI 137 (394) T ss_pred C---cccchhhHHH-HhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceeeccc--------cceEEECCceEEEEee Confidence 1 0011111111 22479999886 56678889999999999999776544332 2333334445555554 Q ss_pred CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC-cCHHHHHHHHHH Q lcl|Aclame:pro 146 FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPA-QSATDVESLRDA 224 (340) Q Consensus 146 ~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~-~~~e~~~~l~~~ 224 (340) ++ .+|+++||||+|.++ .|+++|+||+..+..+|.++.++++|+.++|+||++|+|||++++.. .++++++++++. T Consensus 138 ~~--~~~~~~eiih~r~~~-~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~ 214 (394) T protein:vir:62 138 GG--HEIPPCMIRHVKNIG-ADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINA 214 (394) T ss_pred CC--EEechhheEEecCcC-CCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHH Confidence 44 578999999999886 58899999999999999999999999999999999999999987542 356678899999 Q ss_pred HHH-hcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHH Q lcl|Aclame:pro 225 MRN-SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK 303 (340) Q Consensus 225 ~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~ 303 (340) |++ +.|.+|+|+++|+..+. ++++++++.+++|+||+|.+++++++||++|||||.+||. .+++|+|++.+ T Consensus 215 ~~~~~~g~~n~g~~~vl~~g~---~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~-----~~~sn~e~~~~ 286 (394) T protein:vir:62 215 ILDQLESIDEARSVKMIPLGK---GYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTE-----LIKEDIEKAMM 286 (394) T ss_pred HHHHhccccccCceeEeeCCC---ceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCC-----CCCcCHHHHHH Confidence 976 46779999999886432 5678899999999999999999999999999999999984 34689999999 Q ss_pred HHHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 304 VFVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 304 ~f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) .|+++||.||+.+||+ ||.+|..+ .++|+...+.+.+ T Consensus 287 ~~~~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~fd~~~~~~~~ 330 (394) T protein:vir:62 287 YIHNKAVRPIMKNFEDHLSLLFYAQNSGKRIKFKINILDFVTYS 330 (394) T ss_pred HHHHHHHHHHHHHHHHHHhhhhcCccccCceEEEechhhhcCHH Confidence 9999999999999985 99887543 3667766666655 No 92 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=4.8e-44 Score=258.05 Aligned_cols=304 Identities=14% Similarity=0.080 Sum_probs=192.4 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh---hhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH---SSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~---~~~i~~k~ 77 (340) |+--.+--.+. .....+..+..+ ..|... .| .....+..||++.+ ..+...+.| ...+.... T Consensus 1 Mg~f~~lf~~~---~~~~~~~~~~~~--~~v~~~----~~----~~~~~v~~~i~~Ia--~~iA~~p~~~~~~~~~~~~~ 65 (395) T protein:vir:10 1 MSILEKIFKTR---KDITYMLDLDMI--EDLSQQ----AY----VKRLAIDSCIEFVA--RAVAQSHFKVLEGNRIQKND 65 (395) T ss_pred CchhhhhhccC---ccccccccchhc--cccchh----hh----hhhHHHHHHHHHHH--HhhccceeEeccCCccccch Confidence 66532110010 011111112111 111100 00 11122333444321 111111100 00011111 Q ss_pred hhHHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceee---cccCceEEEEeCCceEEEEc Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRR---GVDDSVFWFVENFTQPHEFA 153 (340) Q Consensus 78 n~~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~---~~~~~~~y~~~~~~~~~~~~ 153 (340) ...+....|||++++. ||+.++.++++.|++|+++.++. | ++++++..+.. ..+.-..+.+...+....++ T Consensus 66 ~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (395) T protein:vir:10 66 VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQRTFT 140 (395) T ss_pred HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeeeeec Confidence 1112234799999875 56677788889999888776543 2 34444433322 22211223344455567899 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 154 PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGN 233 (340) Q Consensus 154 ~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n 233 (340) ++||||+|.+++....||+||+..+..++..+.+ .|.+|+.++|+|.+++..+++++++++++.|++..++.| T Consensus 141 ~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~ 213 (395) T protein:vir:10 141 MQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFN 213 (395) T ss_pred cccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccc Confidence 9999999988888889999999999888876544 466788899999998888999999999999998877767 Q ss_pred ccccccccCCccccccceeeccchhhHH-----HHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHH Q lcl|Aclame:pro 234 FKNLFFYSPNGKPDGIKIVPLSEVATKD-----DFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRN 308 (340) Q Consensus 234 ~~~~~vl~~~~~~~g~~~~pl~~~~~d~-----qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~ 308 (340) +++..++.- .+|++|+|++++++++ ||+|++++++++||++|||||++|| ++++|+|++.+.|+++ T Consensus 214 ~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~~~~ 284 (395) T protein:vir:10 214 KNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVFEKF 284 (395) T ss_pred ccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHHHHH Confidence 666544311 3567888888877654 9999999999999999999999996 4688999999999999 Q ss_pred HHHHHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 309 ELSPLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 309 ~l~P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) +|.|++.+||+ ||++|..+- ++|+.-.|++.| T Consensus 285 ~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D 322 (395) T protein:vir:10 285 CLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKD 322 (395) T ss_pred HHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccC Confidence 99999999986 999986532 234433344444 No 93 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=4.8e-44 Score=258.05 Aligned_cols=304 Identities=14% Similarity=0.080 Sum_probs=192.4 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh---hhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH---SSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~---~~~i~~k~ 77 (340) |+--.+--.+. .....+..+..+ ..|... .| .....+..||++.+ ..+...+.| ...+.... T Consensus 1 Mg~f~~lf~~~---~~~~~~~~~~~~--~~v~~~----~~----~~~~~v~~~i~~Ia--~~iA~~p~~~~~~~~~~~~~ 65 (395) T protein:vir:10 1 MSILEKIFKTR---KDITYMLDLDMI--EDLSQQ----AY----VKRLAIDSCIEFVA--RAVAQSHFKVLEGNRIQKND 65 (395) T ss_pred CchhhhhhccC---ccccccccchhc--cccchh----hh----hhhHHHHHHHHHHH--HhhccceeEeccCCccccch Confidence 66532110010 011111112111 111100 00 11122333444321 111111100 00011111 Q ss_pred hhHHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceee---cccCceEEEEeCCceEEEEc Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRR---GVDDSVFWFVENFTQPHEFA 153 (340) Q Consensus 78 n~~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~---~~~~~~~y~~~~~~~~~~~~ 153 (340) ...+....|||++++. ||+.++.++++.|++|+++.++. | ++++++..+.. ..+.-..+.+...+....++ T Consensus 66 ~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (395) T protein:vir:10 66 VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQRTFT 140 (395) T ss_pred HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeeeeec Confidence 1112234799999875 56677788889999888776543 2 34444433322 22211223344455567899 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 154 PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGN 233 (340) Q Consensus 154 ~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n 233 (340) ++||||+|.+++....||+||+..+..++..+.+ .|.+|+.++|+|.+++..+++++++++++.|++..++.| T Consensus 141 ~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~ 213 (395) T protein:vir:10 141 MQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFN 213 (395) T ss_pred cccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccc Confidence 9999999988888889999999999888876544 466788899999998888999999999999998877767 Q ss_pred ccccccccCCccccccceeeccchhhHH-----HHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHH Q lcl|Aclame:pro 234 FKNLFFYSPNGKPDGIKIVPLSEVATKD-----DFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRN 308 (340) Q Consensus 234 ~~~~~vl~~~~~~~g~~~~pl~~~~~d~-----qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~ 308 (340) +++..++.- .+|++|+|++++++++ ||+|++++++++||++|||||++|| ++++|+|++.+.|+++ T Consensus 214 ~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~~~~ 284 (395) T protein:vir:10 214 KNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVFEKF 284 (395) T ss_pred ccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHHHHH Confidence 666544311 3567888888877654 9999999999999999999999996 4688999999999999 Q ss_pred HHHHHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 309 ELSPLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 309 ~l~P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) +|.|++.+||+ ||++|..+- ++|+.-.|++.| T Consensus 285 ~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D 322 (395) T protein:vir:10 285 CLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKD 322 (395) T ss_pred HHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccC Confidence 99999999986 999986532 234433344444 No 94 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=4.8e-44 Score=258.05 Aligned_cols=304 Identities=14% Similarity=0.080 Sum_probs=192.4 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh---hhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH---SSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~---~~~i~~k~ 77 (340) |+--.+--.+. .....+..+..+ ..|... .| .....+..||++.+ ..+...+.| ...+.... T Consensus 1 Mg~f~~lf~~~---~~~~~~~~~~~~--~~v~~~----~~----~~~~~v~~~i~~Ia--~~iA~~p~~~~~~~~~~~~~ 65 (395) T protein:vir:95 1 MSILEKIFKTR---KDITYMLDLDMI--EDLSQQ----AY----VKRLAIDSCIEFVA--RAVAQSHFKVLEGNRIQKND 65 (395) T ss_pred CchhhhhhccC---ccccccccchhc--cccchh----hh----hhhHHHHHHHHHHH--HhhccceeEeccCCccccch Confidence 66532110010 011111112111 111100 00 11122333444321 111111100 00011111 Q ss_pred hhHHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceee---cccCceEEEEeCCceEEEEc Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRR---GVDDSVFWFVENFTQPHEFA 153 (340) Q Consensus 78 n~~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~---~~~~~~~y~~~~~~~~~~~~ 153 (340) ...+....|||++++. ||+.++.++++.|++|+++.++. | ++++++..+.. ..+.-..+.+...+....++ T Consensus 66 ~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (395) T protein:vir:95 66 VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-E----LLIADSFYREEYALYDDIFKDVTVKDYTYQRTFT 140 (395) T ss_pred HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-C----eEecCCccceeEeecCcceeEEEEcCceeeeeec Confidence 1112234799999875 56677788889999888776543 2 34444433322 22211223344455567899 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccc Q lcl|Aclame:pro 154 PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGN 233 (340) Q Consensus 154 ~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n 233 (340) ++||||+|.+++....||+||+..+..++..+.+ .|.+|+.++|+|.+++..+++++++++++.|++..++.| T Consensus 141 ~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~-------~~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~ 213 (395) T protein:vir:95 141 MQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIG-------AQLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFN 213 (395) T ss_pred cccEEEEccCCCCcccccchHHHHHHHHHHHHHH-------HHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccc Confidence 9999999988888889999999999888876544 466788899999998888999999999999998877767 Q ss_pred ccccccccCCccccccceeeccchhhHH-----HHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHH Q lcl|Aclame:pro 234 FKNLFFYSPNGKPDGIKIVPLSEVATKD-----DFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRN 308 (340) Q Consensus 234 ~~~~~vl~~~~~~~g~~~~pl~~~~~d~-----qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~ 308 (340) +++..++.- .+|++|+|++++++++ ||+|++++++++||++|||||++|| ++++|+|++.+.|+++ T Consensus 214 ~~~~~v~~l---~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~------~~~sn~e~~~~~~~~~ 284 (395) T protein:vir:95 214 KNQLAIAPL---IEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY------GETADLEKNTLVFEKF 284 (395) T ss_pred ccCcceEEc---CCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CcccCHHHHHHHHHHH Confidence 666544311 3567888888877654 9999999999999999999999996 4688999999999999 Q ss_pred HHHHHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 309 ELSPLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 309 ~l~P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) +|.|++.+||+ ||++|..+- ++|+.-.|++.| T Consensus 285 ~l~P~~~~ie~~l~~kL~~~~~~~~~~~f~~~~l~~~D 322 (395) T protein:vir:95 285 CLTPLLKKIQNELNAKLITQSMYLKDTRIEIVGVNKKD 322 (395) T ss_pred HHHHHHHHHHHHHHHhhcChhhhcccceecchhhhccC Confidence 99999999986 999986532 234433344444 No 95 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=1.9e-43 Score=254.78 Aligned_cols=303 Identities=12% Similarity=0.080 Sum_probs=193.8 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcch-hhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAV-HHSSPIYVKRNV 79 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~-~~~~~i~~k~n~ 79 (340) |+=-.+.-.+ .+..+.+..+.++. .+.. +.+.....+..+|++.+ ..+-..+ ++.. -..+.++ T Consensus 1 Mg~f~~~f~~---~~~~~~~~~~~~~~--~~~~--------~~a~~~~~v~~~i~~ia--~~ia~~p~~~~~-~~~~~~~ 64 (385) T protein:vir:95 1 MGLFDSVFKR---HSELSWMYDLEFLQ--DKSK--------KAYLKQIALNTVVEMVA--RTISQSEFRVMK-NNTKEKG 64 (385) T ss_pred Cchhhhhhcc---Ccccccccchhhhh--ccch--------hhhhhhHHHHHHHHHHH--HHHcccceeeee-cCccccc Confidence 5532110000 01111111111110 0000 00011122333444321 1111111 1100 0001111 Q ss_pred H---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEe--CCceEEEEc Q lcl|Aclame:pro 80 L---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVE--NFTQPHEFA 153 (340) Q Consensus 80 ~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~--~~~~~~~~~ 153 (340) . +....|||++++ +||+.++.++++.||||+++.+++ |.++.+.+..+..+... ...++.+. ..+....++ T Consensus 65 ~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 141 (385) T protein:vir:95 65 TLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEG-HFFVADDFEKEDELGLY--SHRFTNVLVNDFEFKRVFT 141 (385) T ss_pred hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCC-Ceeeccccccccccccc--cccceeeeecccceeeeec Confidence 1 223479999986 556788899999999999988765 44555555555443322 22343333 334556799 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC-CCCcCHHHHHHHHHHHHHh-cCc Q lcl|Aclame:pro 154 PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT-DPAQSATDVESLRDAMRNS-KGL 231 (340) Q Consensus 154 ~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~-~~~~~~e~~~~l~~~~~~~-~g~ 231 (340) ++||||+|.+++.+..+|+||+..+..++..+.++.. | ++.|+|+|+++ ...+++++.+++++.|++. .|. T Consensus 142 ~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-----~--~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~ 214 (385) T protein:vir:95 142 MDDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-----L--NNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAF 214 (385) T ss_pred cccEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-----h--cCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhh Confidence 9999999998877778999999999999987766543 2 33478888876 3568999999999999876 455 Q ss_pred cccc-ccccccCCccccccceeeccc------hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH Q lcl|Aclame:pro 232 GNFK-NLFFYSPNGKPDGIKIVPLSE------VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV 304 (340) Q Consensus 232 ~n~~-~~~vl~~~~~~~g~~~~pl~~------~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~ 304 (340) .|.+ .+++++ +|++|+|+++ +++|+||+|++++++++||++|||||++|| ++++|+|++... T Consensus 215 ~~~~~~i~~l~-----~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~------~~~sn~e~~~~~ 283 (385) T protein:vir:95 215 QNNTIAVVPLT-----EGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL------GEMADLEKTIES 283 (385) T ss_pred hhcCCceEEcC-----CCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCcCHHHHHHH Confidence 4544 455563 5778998875 567999999999999999999999999995 578999999999 Q ss_pred HHHHHHHHHHHHHHH-HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFRE-VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~-ln~~l~~~------~~rf~~~~l~~~~ 340 (340) |+++||+|++.+||+ ||.+|..+ .++|+.-.|++.| T Consensus 284 ~~~~~l~P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D 326 (385) T protein:vir:95 284 YLQFCINPLLRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRD 326 (385) T ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhcccceEEEechhhhccC Confidence 999999999999996 99988654 2566655666665 No 96 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=2e-41 Score=243.70 Aligned_cols=303 Identities=10% Similarity=0.052 Sum_probs=176.9 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh-h--hhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH-H--SSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~-~--~~~i~~k~ 77 (340) |+-=.+.-.+.. ....+..+.+++. +... .++ ....+..||++.+ ..+-..+. + ........ T Consensus 1 Mg~f~~l~~~~~---~~~~~~~~~~~~~--~~~~----~~l----~~~~v~~~i~~Ia--~~ia~~p~~~~~~~~~~~~~ 65 (376) T protein:vir:78 1 MGFFSELFKRNK---EIEWMWDLDFLED--KTTK----VYL----KKMALNTCVKHIA--RTIAKSDFRLKNGETSVRDK 65 (376) T ss_pred CchhhhhhccCC---ccccccchhhccc--cchh----hhh----hhHHHHHHHHHHH--Hhhcccceeeccccccccch Confidence 654211100100 1111111111111 1110 011 0112333333321 11110110 0 00000111 Q ss_pred hhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEE--eCCceEEEEcc Q lcl|Aclame:pro 78 NVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFV--ENFTQPHEFAP 154 (340) Q Consensus 78 n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~--~~~~~~~~~~~ 154 (340) ...+...+|||++++ +||+.++.++++.||+|+++.|+..|.+.+++|+.+..+... .++.+ .+.+....|++ T Consensus 66 l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 141 (376) T protein:vir:78 66 LYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPD----VFEGVTVKDYRYNRNFSM 141 (376) T ss_pred HHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeee----eeeeeeeecceeeeeecc Confidence 111233479999886 456777889999999999999999999999999988655332 23333 23334567999 Q ss_pred ccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHH-HHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhc-Ccc Q lcl|Aclame:pro 155 DTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRK-YYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSK-GLG 232 (340) Q Consensus 155 ~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~-~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~-g~~ 232 (340) +||||+|........++.+.+..+... .....+. .+.||.++++++. +...+++++.+++++.|++.. |.. T Consensus 142 ~evih~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~g~~ 214 (376) T protein:vir:78 142 DDVIFLEYGNERLSAFTDGMFEDYGEL------FGKMIRAQMRNFQIRGAVNFK-MAGVADKDKQTKLQEYIDKVYASFN 214 (376) T ss_pred ccEEEeccCCCCchhhhhHHHHHHHHH------HHHHHHHHHhcCCCceeEEEc-cCCCCCHHHHHHHHHHHHHHhcccc Confidence 999999954321111122222222211 1122223 3444555444454 445789999999999998765 443 Q ss_pred -cccccccccCCccccccceeeccchhhH-----HHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHH Q lcl|Aclame:pro 233 -NFKNLFFYSPNGKPDGIKIVPLSEVATK-----DDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFV 306 (340) Q Consensus 233 -n~~~~~vl~~~~~~~g~~~~pl~~~~~d-----~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~ 306 (340) +.+.+++++ .|++|+|+++++.| +||+|++++++++||++|||||+++| ++++|+|++...|+ T Consensus 215 ~~~~~v~~l~-----~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~------~~~s~~e~~~~~f~ 283 (376) T protein:vir:78 215 NNEIAIVPQL-----EGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLH------GDMADLSNNMKAYM 283 (376) T ss_pred ccCcceEEcC-----CCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhC------CCCCCHHHHHHHHH Confidence 444456564 56778888777654 59999999999999999999999996 46889999999999 Q ss_pred HHHHHHHHHHHHH-HHHhhCccceeecccc---cCCCC Q lcl|Aclame:pro 307 RNELSPLQDRFRE-VNDWLGMEVIRFKEYT---LDNPE 340 (340) Q Consensus 307 ~~~l~P~~~~ie~-ln~~l~~~~~rf~~~~---l~~~~ 340 (340) ++||.|++++||+ +|++|..+--++.+|+ +++.| T Consensus 284 ~~~l~P~~~~ie~~l~~kll~~~~~~~~~~~~~ll~~d 321 (376) T protein:vir:78 284 EYCIDPLTKKLEDELNAKLFTFSEFLAGEHIKIIHKKD 321 (376) T ss_pred HHHHHHHHHHHHHHHHhhhCCcccceecccchhhcccC Confidence 9999999999986 9999865432223333 33344 No 97 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=2.4e-39 Score=232.35 Aligned_cols=306 Identities=10% Similarity=-0.021 Sum_probs=176.1 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh----h-hhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH----S-SPIYV 75 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~----~-~~i~~ 75 (340) |+-...-..... ...+ .+..+.+-.. +... .|+ ....+..||++.+ ..+-..+.| + ..... T Consensus 1 Mgl~d~~~~~~~-~~~~-~~~~~~~~~~--~~~~----~~l----~~~~v~~~i~~Ia--~~ia~lp~~v~~~~~~~~~~ 66 (395) T protein:vir:96 1 MGILDFFSFKKS-GTLS-DDDSGSTTSE--KLTN----VVL----KEDALYKCVNYLA--RIISKSTFRIKAPEKLTENQ 66 (395) T ss_pred CcchhhhcCCCC-cccc-ccccccchhh--hcch----hhh----hhHHHHHHHHHHH--HhhccceeEEEeCCcccccc Confidence 443311000000 0000 0000000000 0000 000 0112223333211 111000000 0 00001 Q ss_pred hhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEEEEeC--CceEEEE Q lcl|Aclame:pro 76 KRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVEN--FTQPHEF 152 (340) Q Consensus 76 k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~--~~~~~~~ 152 (340) ..-..+...+|||+++. +||+.++.++++.||||+++.|+..+.+...++ ......+..++.+.. ......+ T Consensus 67 ~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~ 141 (395) T protein:vir:96 67 KDWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIYVADAFT-----QDKKLSGNKFKVSRVQGQTYEKIF 141 (395) T ss_pred chHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCceecCCccc-----cccccccceeeeeeeccceeeeEe Confidence 11111233579999885 667788899999999999999986443322222 222223344444432 2335679 Q ss_pred ccccEEEecCCCCCCCcccccchhhhHHHHHH------HHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHH Q lcl|Aclame:pro 153 APDTVFHLLEPDINQEIYGLPEYLSALNSAWL------NESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMR 226 (340) Q Consensus 153 ~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~------~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~ 226 (340) +++||||+|...+....++.+++......+.. ...+.+|..++|.||+.|++++.+++.. +.+..++.|+ T Consensus 142 ~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 217 (395) T protein:vir:96 142 TFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGR----QPKSDKDFFK 217 (395) T ss_pred ccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchh----hHHHHHHHHH Confidence 99999999977654444555544444433333 2335578899999999999999876543 3344555555 Q ss_pred HhcCcc--cccccccccCCccccccceeeccchhhHHHHHHHHHhh------HHHHHHHhcCCHHHcccccccccccccH Q lcl|Aclame:pro 227 NSKGLG--NFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKAS------AADLMDAHRVPFQLMGGKPENIGSLGDV 298 (340) Q Consensus 227 ~~~g~~--n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~------~~~I~~~f~VPp~~lG~~~~~~~~~~n~ 298 (340) +.++.. +.+.++++ +.|++|+|++.++.|+|++|.++++ +++||++|||||++|| ++++|+ T Consensus 218 ~~~~~~~~~~~~v~~l-----~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~------~~~sn~ 286 (395) T protein:vir:96 218 RTIEKIRTESVVGIPV-----TANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDIADN 286 (395) T ss_pred HHHHHhhcCCcceEEc-----cCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCccH Confidence 544333 33345555 3678999999999999999998876 4899999999999996 468899 Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 299 EKVAKVFVRNELSPLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 299 e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) |++.+.|+++||.||+.+||+ ||++|..+- ++|+--.|+..| T Consensus 287 e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~~~~f~~~~l~~~d 334 (395) T protein:vir:96 287 QKNYELLLEGPIESLITNIVDGLEYAIFDKSETLEGSFIKVTGLKNYD 334 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceeEeecchhccC Confidence 999999999999999999995 999986542 223322344444 No 98 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=1.1e-38 Score=228.70 Aligned_cols=308 Identities=11% Similarity=0.032 Sum_probs=177.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhhhhcchhh-hhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKSLRSAVHH-SSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~~r~~~~~-~~~i~~k~ 77 (340) |.=+......-.+.........+.+... ..+. +-+.+.....+..||++.+ ++++.- ..+. ...+. .. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~l~~~~v~~~v~~Ia~~ia~~p~-~~~~~~~~~~-~~ 71 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLTDTVWCSI-----PSEK--LKELSIKKWAIDSCANKIANTLSCAEV-LTYEKGEEVR-KK 71 (395) T ss_pred CchHHHHHhhhcccccccccccchhhcc-----cccc--chhhhhhhHHHHHHHHHHHHHHhhCce-eeccCCcccc-ch Confidence 6553211111000000000011111100 0000 0000001112333444321 111100 0000 00111 11 Q ss_pred hhHHHhhhccCCCcHH-HHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcce-eecccCceEEEEeCCc--eEEEEc Q lcl|Aclame:pro 78 NVLASTYIPHPLLSRQ-DFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYT-RRGVDDSVFWFVENFT--QPHEFA 153 (340) Q Consensus 78 n~~~~~~~pnp~~~~~-~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~-~~~~~~~~~y~~~~~~--~~~~~~ 153 (340) ...+...+|||+++.. ||+.++.+++++||||+++.++.. ++.+.... ........|+.+..++ -...|+ T Consensus 72 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 145 (395) T protein:vir:40 72 NWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYI------YVADSFTKNDKSLYENTYTEVTLKDLTLKKEFK 145 (395) T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCce------eecCCccccccccccceeeeeeecCceeeeeec Confidence 2223345799999875 556778999999999999988753 22222111 1112223344443332 345789 Q ss_pred cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhc-Cc- Q lcl|Aclame:pro 154 PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSK-GL- 231 (340) Q Consensus 154 ~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~-g~- 231 (340) ++||||+|........++.+.+......+.. ......+.|+.++++++.. ...+++++.+++++.|++.. |. T Consensus 146 ~~evih~r~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 219 (395) T protein:vir:40 146 ESEVLHLTLNNESIKSIIDGFYLLYGDLLTA-----AVNKYKKLNSRKIIVKLKA-MFGQTPEAEEKLRLMLSERMKKFL 219 (395) T ss_pred cccEEEeecCCCCccccchhHHHHHHHHHHH-----HHHHHHhcCCCCceEEEec-ccCCCHHHHHHHHHHHHHHHHHhh Confidence 9999999954321111222222222222222 2233345566666666654 34689999999999998754 42 Q ss_pred ccccccccccCCccccccceeeccchhhHHHHHHHHHhhH---HHHHHHhcCCHHHcccccccccccccHHHHHHHHHHH Q lcl|Aclame:pro 232 GNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASA---ADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRN 308 (340) Q Consensus 232 ~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~---~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~ 308 (340) +|++++++++ +|++|+|++++++|+||+|+++++. ++||++|||||+++| ++++|+|++...|+++ T Consensus 220 ~~~~~~~vl~-----~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~------~~~sn~e~~~~~f~~~ 288 (395) T protein:vir:40 220 AEGDSALPVE-----DGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK------GDTVGLSEQVNSFLMF 288 (395) T ss_pred ccCCceeecC-----CCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCCcCHHHHHHHHHHH Confidence 6778888874 6788999999999999999999985 799999999999996 4688999999999999 Q ss_pred HHHHHHHHHHH-HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 309 ELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 309 ~l~P~~~~ie~-ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) ||.||+++||+ ||.+|..+ .++|+...|++.+ T Consensus 289 ~L~P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d 328 (395) T protein:vir:40 289 SINPIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQD 328 (395) T ss_pred HHHHHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccC Confidence 99999999985 99988543 3677766777777 No 99 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=5e-38 Score=225.10 Aligned_cols=309 Identities=11% Similarity=0.002 Sum_probs=184.8 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh-h----hhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH-H----SSPIYV 75 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~-~----~~~i~~ 75 (340) |.--..-......... .+...... ..+.. +.+.....+..||++.+ ..+-..+. + ...+.. T Consensus 1 MGlf~~~~~~~~~~~~--~~~~~~~~--~~~~~--------~~~~~~~~v~~~I~~ia--~~iA~lp~~~~~~~~~~~~~ 66 (395) T protein:vir:98 1 MGILDFFSFKKSGTLS--DDDSGSTT--SEKLT--------NVVLKEDALYKCVNYLA--RIISKSTFRLKTPEKLTENQ 66 (395) T ss_pred CcchhhhcCCCccccc--ccccchhh--hhhcc--------hhhhhhHHHHHHHHHHH--HHHhhCceeEEecCCccccc Confidence 3322110000000000 00000000 00000 00001122333444321 11111110 0 001111 Q ss_pred hhhhHHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceee-cccCceEEEEeCC--ceEEE Q lcl|Aclame:pro 76 KRNVLASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRR-GVDDSVFWFVENF--TQPHE 151 (340) Q Consensus 76 k~n~~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~-~~~~~~~y~~~~~--~~~~~ 151 (340) .....+...+|||+++. +||+.++.++++.||||+++.++..+.+ +...++. ...+..++.+... +-..+ T Consensus 67 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (395) T protein:vir:98 67 KDWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIYV------ADSFTQDKKISGSQFKVSRVQGQTYEKT 140 (395) T ss_pred chHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCceec------CCcccccccccCcccceeeecCceeeeE Confidence 12222334589999885 5667778999999999999999864322 2222222 2233334444332 33467 Q ss_pred EccccEEEecCCCCCCCcccccchhhhHHHHHHH--HHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhc Q lcl|Aclame:pro 152 FAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLN--ESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSK 229 (340) Q Consensus 152 ~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~--~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~ 229 (340) ++++||||+|...+....++.+++.....++... .....+..+++.++..+++++.......++++.+..++++++.. T Consensus 141 ~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (395) T protein:vir:98 141 FTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTV 220 (395) T ss_pred ecCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHH Confidence 8999999999766544445555555555554433 33445567899999999999887766677888888888888876 Q ss_pred Cccc--ccccccccCCccccccceeeccc------hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH Q lcl|Aclame:pro 230 GLGN--FKNLFFYSPNGKPDGIKIVPLSE------VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV 301 (340) Q Consensus 230 g~~n--~~~~~vl~~~~~~~g~~~~pl~~------~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~ 301 (340) +..+ .+.+++++ .|++|+|++. +++++||++++++++++||++|||||++|| ++++|+|++ T Consensus 221 ~~~~~~~~~v~~l~-----~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~------~~~sn~e~~ 289 (395) T protein:vir:98 221 EKIRTESVVGIPVT-----ANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH------GDIADNQKN 289 (395) T ss_pred hhhhcCCcceeecC-----CCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc------CCcccHHHH Confidence 6543 33455553 5778999885 467889999999999999999999999996 568999999 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccc-----eeecccccCCCC Q lcl|Aclame:pro 302 AKVFVRNELSPLQDRFRE-VNDWLGMEV-----IRFKEYTLDNPE 340 (340) Q Consensus 302 ~~~f~~~~l~P~~~~ie~-ln~~l~~~~-----~rf~~~~l~~~~ 340 (340) ...|+++||.||+.+||+ ||++|..+. +.|+-..|++.| T Consensus 290 ~~~f~~~tl~P~~~~ie~~l~~kll~~~~~~~g~~f~~~~l~~~d 334 (395) T protein:vir:98 290 YELLLEGPIESLITNIVDGLEYAIFDKSETLQGSFIKVTGLKNYD 334 (395) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhcCcceeeehhhhccC Confidence 999999999999999986 999886532 224333455555 No 100 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=2.3e-38 Score=226.95 Aligned_cols=277 Identities=12% Similarity=0.073 Sum_probs=173.0 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheee--eeecCchhhcccchHH--hhhh----hhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVE--CISNGKWYEPPVSFSG--LAKS----LRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~--~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~~~ 72 (340) |--=.+-. +|+......+...+..+.. +..+..++..||++.+ ++.+ ++.....+.. T Consensus 1 Mg~f~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~ 65 (378) T protein:vir:94 1 MNLFGKVV---------------SFSRGKLNNDTQRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGS 65 (378) T ss_pred CCccccch---------------hcccccccCCcceeeeeccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCccc Confidence 32221110 1111000000000111100 1112223444444321 1111 1100000000 Q ss_pred h--hhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEec-CCceeEEEEEecCcceeecccCceEEEEeC Q lcl|Aclame:pro 73 I--YVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHS-VTGQLIKLLTSPAKYTRRGVDDSVFWFVEN 145 (340) Q Consensus 73 i--~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~-~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~ 145 (340) . ....++.+ ...+|||+++. +||+.++.+++++||||++++++ ..|+++.++|.. T Consensus 66 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~~------------------ 127 (378) T protein:vir:94 66 DTLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFAD------------------ 127 (378) T ss_pred ccccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEecC------------------ Confidence 0 00112222 33579999986 56778889999999999987664 457777776532 Q ss_pred CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 146 FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAM 225 (340) Q Consensus 146 ~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~ 225 (340) ...+|+++||||+|.+ .++..|+||+..+++++.. ++++| .|+|+|++++ .+++++.++++++| T Consensus 128 --~~~~~~~~diiH~~~~--~~~~~g~s~l~~~~~~i~~----------~~~~~-~~~gil~~~~-~l~~~~~~~~~~~~ 191 (378) T protein:vir:94 128 --DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQT----------KLEQG-KLRGLLKINA-FLDIDNTQEYREKA 191 (378) T ss_pred --CeeEeeeeeeEEecCc--CCccchhHHHHHHHHHHHH----------HHhcc-cccceeeeCC-cCCHHHHHHHHHHH Confidence 2246789999999964 5677899999988887643 34454 6899999875 57777666555555 Q ss_pred ----HHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH Q lcl|Aclame:pro 226 ----RNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV 301 (340) Q Consensus 226 ----~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~ 301 (340) ++..+++|++++++++ .|++|+|++++++++|+ +.+++++++||++|||||.+|+ ++ +.|++ T Consensus 192 ~~~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~------~~--~se~~ 257 (378) T protein:vir:94 192 LTTIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------GT--ASQEQ 257 (378) T ss_pred HHHHHHhhcccccccceecC-----CCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc------CC--hHHHH Confidence 4445778899999884 57889999999999997 5668999999999999999984 23 34789 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccc-------------eeecccccCCCC Q lcl|Aclame:pro 302 AKVFVRNELSPLQDRFRE-VNDWLGMEV-------------IRFKEYTLDNPE 340 (340) Q Consensus 302 ~~~f~~~~l~P~~~~ie~-ln~~l~~~~-------------~rf~~~~l~~~~ 340 (340) ...|+++||.||+++||+ ||.+|..+- +.|+.-.|+..+ T Consensus 258 ~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d 310 (378) T protein:vir:94 258 QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcC Confidence 999999999999999995 999996541 345444455554 No 101 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=2e-38 Score=227.24 Aligned_cols=278 Identities=11% Similarity=0.052 Sum_probs=173.6 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchh---hhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVH---HSS 71 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~---~~~ 71 (340) |.=-.+..+-..............|..... ..+..++..||++.+ ++.+ ++...- +.+ T Consensus 1 Mg~f~~~~~f~~~~~~~~~~~~~~~~~~~~-------------~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~ 67 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAV-------------EYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) T ss_pred CccchhhhhhhccccCCCcceeeecccchh-------------HHHHHHHHHHHHHHHhhhhhCceeeEEEccccccccc Confidence 443322211111111111111111111110 012223334444321 1111 111000 000 Q ss_pred hhhhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecC-CceeEEEEEecCcceeecccCceEEEEeCC Q lcl|Aclame:pro 72 PIYVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSV-TGQLIKLLTSPAKYTRRGVDDSVFWFVENF 146 (340) Q Consensus 72 ~i~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~-~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~ 146 (340) .... .++.+ ...+|||+++. +||+.++.+++++||||++++|+. .|+++.++|. T Consensus 68 ~~~~-~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~-------------------- 126 (378) T protein:vir:93 68 LISM-AGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFA-------------------- 126 (378) T ss_pred cccc-ccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEec-------------------- Confidence 0001 11222 23479999986 566778899999999999988764 3666666553 Q ss_pred ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHH Q lcl|Aclame:pro 147 TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMR 226 (340) Q Consensus 147 ~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~ 226 (340) +...+|+++||||+|.+ .++..|.|++..+++++. .+|++| .++|+|++++ .+++++.+++++.|+ T Consensus 127 ~~~~~~~~~diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~~-~~~g~l~~~~-~l~~~~~~~~~~~~~ 192 (378) T protein:vir:93 127 DDKKEYKTEELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQG-KLRGLLKINA-FLDIDNTQEYREKAL 192 (378) T ss_pred CCeeEeccceeEEecCc--cccchhhHHHHHHHHHHH----------HHHhcC-cccceeeeCC-cCCHHHHHHHHHHHH Confidence 22346889999999954 567779999888776653 356665 5899999765 577776666665554 Q ss_pred ----HhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 227 ----NSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 227 ----~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) +..+++|++++++++ .|++|+|++.+++++|+ +..++++++||++|||||.+|+ + ++.|++. T Consensus 193 ~~~~~~~~~~~~~~~~~l~-----~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~------g--~~~e~~~ 258 (378) T protein:vir:93 193 TTIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------G--TATQEQQ 258 (378) T ss_pred HHHHHhhcccccccceEcC-----CCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc------C--CcHHHHH Confidence 456778889999884 57889999999999997 5667999999999999999984 2 2358999 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCccc-------------eeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGMEV-------------IRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~~-------------~rf~~~~l~~~~ 340 (340) ..|+++||.||+++||+ ||.+|..+- ++|+.-.|+..| T Consensus 259 ~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d 310 (378) T protein:vir:93 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcC Confidence 99999999999999986 999986531 345444455444 No 102 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=1.4e-36 Score=217.23 Aligned_cols=279 Identities=10% Similarity=0.042 Sum_probs=171.0 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchhhhhhh- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHHSSPI- 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~~~~i- 73 (340) |.==.+-.+...............|.... +..+...+..||++.+ ++.+ ++......... T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~ 67 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEA-------------VEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDT 67 (378) T ss_pred CccchhhhhhhcccccCCcceeeecccch-------------hhHHHHHHHHHHHHHHhhhhhCceeEEEEccccccccc Confidence 32211111000000000000011111110 0112223334444321 1111 01000000000 Q ss_pred -hhhhhhHH---HhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCC-ceeEEEEEecCcceeecccCceEEEEeCCc Q lcl|Aclame:pro 74 -YVKRNVLA---STYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVT-GQLIKLLTSPAKYTRRGVDDSVFWFVENFT 147 (340) Q Consensus 74 -~~k~n~~~---~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~-G~~~~L~pl~~~~~~~~~~~~~~y~~~~~~ 147 (340) ....++.+ ...+|||+++. +||+.++.++++.||||++++|+.. |+++.++|.. T Consensus 68 ~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~~-------------------- 127 (378) T protein:vir:16 68 LISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFAD-------------------- 127 (378) T ss_pred ccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecC-------------------- Confidence 00112222 23479999886 5677888999999999999988764 6666665532 Q ss_pred eEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHH-- Q lcl|Aclame:pro 148 QPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAM-- 225 (340) Q Consensus 148 ~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~-- 225 (340) ...+|+++||||+|.+ .++..|.||+..+++++. .++++ +.++|+|+.++ .+++++.+++++.| T Consensus 128 ~~~~~~~~diih~r~~--~~~~~~~s~l~~~~~~i~----------~~~~~-~~~~g~l~~~~-~l~~~~~~~~~~~~~~ 193 (378) T protein:vir:16 128 DKKEYKPEELVRLTSP--FYINEDTSILDNALASIQ----------TKLEQ-GKLRGLLKINA-FLDIDNTQEYREKALT 193 (378) T ss_pred CeeEecccceEEecCc--cCccchhHHHHHHHHHHH----------HHHhc-CccceeeEeCC-cCCHHHHHHHHHHHHH Confidence 2346788999999954 467778999888877653 23444 46899998765 56776655555555 Q ss_pred --HHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHH Q lcl|Aclame:pro 226 --RNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK 303 (340) Q Consensus 226 --~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~ 303 (340) ++..+++|++++++++ +|++|+|++++++++|+.+ .++++++||++|||||.+|+ + ++.|++.. T Consensus 194 ~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~~~~~~~-~~~~~~~Ia~~fgVPp~~l~------g--~~~e~~~~ 259 (378) T protein:vir:16 194 TIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNKDE-IDLIKSELLTGYFMNENILL------G--TASQEQQI 259 (378) T ss_pred HHHHhhcccccccceEcC-----CCceEEEccCChhhhhHHH-HHHHHHHHHHHhCCCHHHhc------C--CchHHHHH Confidence 4456788999999985 5778999999999999855 57899999999999999984 2 33589999 Q ss_pred HHHHHHHHHHHHHHHH-HHHhhCccc-------------eeecccccCCCC Q lcl|Aclame:pro 304 VFVRNELSPLQDRFRE-VNDWLGMEV-------------IRFKEYTLDNPE 340 (340) Q Consensus 304 ~f~~~~l~P~~~~ie~-ln~~l~~~~-------------~rf~~~~l~~~~ 340 (340) .|+++||.||+++||+ ||.+|..+- ++|+.-.|+..+ T Consensus 260 ~f~~~tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d 310 (378) T protein:vir:16 260 YFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcC Confidence 9999999999999985 999986542 345444454444 No 103 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=5.8e-35 Score=208.28 Aligned_cols=278 Identities=13% Similarity=0.090 Sum_probs=166.6 Q ss_pred CCCCCCCcccccccCCccceEEEEC-CCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchhh---h Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTF-GEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVHH---S 70 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f-~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~~---~ 70 (340) |+-=.+-.............++|+. ++.. ..+..++..||++.+ ++++ ++.+... . T Consensus 1 M~if~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~ 66 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQRVTAWQNEAV--------------EYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) T ss_pred CchhHHhHhhhhcccccCcceeeeeecchh--------------hhhhHHHHHHHHHHHHhHhhCceeeeeecccccccc Confidence 5544322211111111111223322 2211 111123334444321 1111 1111100 0 Q ss_pred hhhhhhhhhH--HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEE-EecCCceeEEEEEecCcceeecccCceEEEEeCC Q lcl|Aclame:pro 71 SPIYVKRNVL--ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQ-RHSVTGQLIKLLTSPAKYTRRGVDDSVFWFVENF 146 (340) Q Consensus 71 ~~i~~k~n~~--~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i-~r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~~ 146 (340) .....+-..+ +...+|||+++. +||+.++.++++.||||++. .++..|++..+++. .+ T Consensus 67 ~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~------------------~~ 128 (378) T protein:vir:94 67 TLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFA------------------ND 128 (378) T ss_pred cccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEe------------------cC Confidence 0111111111 223479999886 56677889999999999984 45566776555432 12 Q ss_pred ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHH----HH Q lcl|Aclame:pro 147 TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVES----LR 222 (340) Q Consensus 147 ~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~----l~ 222 (340) + .+++++||+|++.+...++ +.+++..+.+++. ..+++| .++|+|+.+. .+++++.++ ++ T Consensus 129 ~--~~~~~~dvih~~~~~~~~~--~~~~~~~~~~~~~----------~~~~~~-~~~g~l~~~~-~l~~~~~~~~~e~~~ 192 (378) T protein:vir:94 129 K--KEYKPEELVRLTSPFYINE--DTSILDNALASIQ----------TKLEQG-KLRGLLKINA-FLDIDNTQEYREKAL 192 (378) T ss_pred c--EEechhceeeecCcCCccc--chhHHHHHHHHHH----------HHHhhC-CcccceeeCC-cCCHHHHHHHHHHHH Confidence 2 4578999999996543333 4455555544432 334444 6889998775 577665544 55 Q ss_pred HHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH Q lcl|Aclame:pro 223 DAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA 302 (340) Q Consensus 223 ~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~ 302 (340) +.|++..++.|++++++++ +|++|+|++++++++|+ +..++++++||++|||||++|+ +++ .|++. T Consensus 193 ~~~~~~~~~~n~~~~~vl~-----~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~------g~~--~e~~~ 258 (378) T protein:vir:94 193 ATIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------GTA--TQEQQ 258 (378) T ss_pred HHHHHhhcccccccceecc-----CCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhc------CCc--hHHHH Confidence 5555566778888899884 57889999999999997 6678999999999999999984 233 37889 Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhCccc-------------eeecccccCCCC Q lcl|Aclame:pro 303 KVFVRNELSPLQDRFRE-VNDWLGMEV-------------IRFKEYTLDNPE 340 (340) Q Consensus 303 ~~f~~~~l~P~~~~ie~-ln~~l~~~~-------------~rf~~~~l~~~~ 340 (340) ..|+++||.||+.+||+ ||.+|..+- +.|+.-.|+..+ T Consensus 259 ~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d 310 (378) T protein:vir:94 259 IYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcC Confidence 99999999999999986 999986431 334444444444 No 104 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=1.6e-34 Score=205.86 Aligned_cols=277 Identities=12% Similarity=0.069 Sum_probs=163.4 Q ss_pred CCCCCCCcc-cccccCCccceEEEE-CCCceeecCcchhhheeeeeecCchhhcccchHH--hhhh----hhcchh-hhh Q lcl|Aclame:pro 1 MSKRKPRKA-VAMTASAPQKMEAFT-FGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG--LAKS----LRSAVH-HSS 71 (340) Q Consensus 1 m~~~~~~~~-~~~~~~~~~~~~~~~-f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~--l~~~----~r~~~~-~~~ 71 (340) |+.=.+... ..... .....+.|+ +++- +..+..++..||++.+ ++.+ ++.... +.. T Consensus 1 M~~f~k~~~~~~~~~-~~~~~~~~~~~~~~--------------~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~ 65 (378) T protein:vir:85 1 MNLFGKVVSFSRGKL-NNDTQRVTAWQNEA--------------VEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGS 65 (378) T ss_pred Cchhhhhhhhhhccc-ccCCcceeeeeccc--------------hhhhhHHHHHHHHHHHHhHhhCceeEEEEecccccc Confidence 665221110 00000 011112222 1211 0111223334444321 1111 111100 000 Q ss_pred -hhhhhhhhH---HHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEE-ecCCceeEEEEEecCcceeecccCceEEEEeC Q lcl|Aclame:pro 72 -PIYVKRNVL---ASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQR-HSVTGQLIKLLTSPAKYTRRGVDDSVFWFVEN 145 (340) Q Consensus 72 -~i~~k~n~~---~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~-r~~~G~~~~L~pl~~~~~~~~~~~~~~y~~~~ 145 (340) ......++. +...+|||++++ +||+.++.++++.||||++++ ++..|++..+++. T Consensus 66 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~------------------- 126 (378) T protein:vir:85 66 DTLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLFA------------------- 126 (378) T ss_pred ccccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEec------------------- Confidence 000112222 223579999886 556677889999999999864 4455554433322 Q ss_pred CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHH Q lcl|Aclame:pro 146 FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAM 225 (340) Q Consensus 146 ~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~ 225 (340) ++ ...+.++||||++.+...++ +.+.+..+.+++ ..++++| .|+|+|++++ .+++++.+++++.| T Consensus 127 ~~-~~~~~~~dvih~~~~~~~~~--~~~~~~~a~~~~----------~~~~~~~-~~~g~l~~~~-~l~~~~~~~~~~~~ 191 (378) T protein:vir:85 127 ND-KKEYKPEELVRLVSPFYINE--DTSILDNALASI----------QTKLEQG-KLRGLLKINA-FLDIDNTQEYREKA 191 (378) T ss_pred CC-CEEEcccceEEEecCcCccc--hhhHHHHHHHHH----------HHHHhcC-CcceEEEeCC-cCCHHHHHHHHHHH Confidence 22 23577899999985432222 233333333332 2345554 7899999765 57887777776666 Q ss_pred H----HhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH Q lcl|Aclame:pro 226 R----NSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV 301 (340) Q Consensus 226 ~----~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~ 301 (340) + +..+++|++++++++ +|++|+|++++++++|+ +..++++++||++|||||++|+ + ++.|++ T Consensus 192 ~~~~~~~~~~~~~g~~~vl~-----~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~------~--s~~e~~ 257 (378) T protein:vir:85 192 LATIKNMQEGSSYNGLTPVD-----NKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILL------G--TATQEQ 257 (378) T ss_pred HHHHHHhhcccccccceecC-----CCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc------C--CchHHH Confidence 4 445778999999985 57889999999999997 5678999999999999999984 2 345899 Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhCccc-------------eeecccccCCCC Q lcl|Aclame:pro 302 AKVFVRNELSPLQDRFRE-VNDWLGMEV-------------IRFKEYTLDNPE 340 (340) Q Consensus 302 ~~~f~~~~l~P~~~~ie~-ln~~l~~~~-------------~rf~~~~l~~~~ 340 (340) ...|+++||.||+.+||+ ||.+|..+- +.|+.-.|+..+ T Consensus 258 ~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d 310 (378) T protein:vir:85 258 QIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFAT 310 (378) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcC Confidence 999999999999999996 999986541 234433444444 No 105 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=4.2e-34 Score=203.59 Aligned_cols=232 Identities=12% Similarity=0.119 Sum_probs=149.6 Q ss_pred CC--CCCCCcccccccCC-ccceE-EEECCC--ceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh-hhhh Q lcl|Aclame:pro 1 MS--KRKPRKAVAMTASA-PQKME-AFTFGE--PVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH-SSPI 73 (340) Q Consensus 1 m~--~~~~~~~~~~~~~~-~~~~~-~~~f~~--p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~-~~~i 73 (340) |. +++.+.+...+... ..... ..+|.. ...|... .++ ....+..||++. +..+-..+.| ..-- T Consensus 1 MglF~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~al----~~~~v~~~i~~i--a~~iA~lp~~~~~~~ 70 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPSFQGTKLRQYKDI----EAI----RHSDIFTAVMMI--ASDLARMPIRVTVNG 70 (251) T ss_pred CCccccccccccCCCccchhhhhhhhccccCcCcceechh----hhh----ccHHHHHHHHHH--HHhHhhCceEEeeCc Confidence 55 33322222111111 10100 011111 0111100 000 111233444432 1111111111 0000 Q ss_pred hhhhhh---HHHhhhccCCCcH-HHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC--ceEEEEe--- Q lcl|Aclame:pro 74 YVKRNV---LASTYIPHPLLSR-QDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD--SVFWFVE--- 144 (340) Q Consensus 74 ~~k~n~---~~~~~~pnp~~~~-~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~--~~~y~~~--- 144 (340) ....++ .+....|||+++. +|++.++.+++++||||++++|+..|++++|+|++|.+|++..+. ..+|.+. T Consensus 71 ~~~~~~~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~ 150 (251) T protein:vir:46 71 QINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRID 150 (251) T ss_pred cccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEec Confidence 111122 2233579999886 567788899999999999999999999999999999999887654 3333332 Q ss_pred --CCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHH Q lcl|Aclame:pro 145 --NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLR 222 (340) Q Consensus 145 --~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~ 222 (340) .++....++++||||+|.++ .++++|+||+.++++++.++.++++|..++|+||++|+|||++++...+++++++++ T Consensus 151 ~~~~g~~~~~~~~diiH~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~ 229 (251) T protein:vir:46 151 SNGNNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAR 229 (251) T ss_pred cCCcceeEEECCccEEEecCcC-CCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHH Confidence 24567889999999999886 589999999999999999999999999999999999999999987666888899999 Q ss_pred HHHHHh-cCcccccccccccCCccc Q lcl|Aclame:pro 223 DAMRNS-KGLGNFKNLFFYSPNGKP 246 (340) Q Consensus 223 ~~~~~~-~g~~n~~~~~vl~~~~~~ 246 (340) +.|++. .|.+|+|++.+ |+.. T Consensus 230 ~~~~~~~~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 230 EEFPKVLVELNKLGKLSY---SMNQ 251 (251) T ss_pred HHHHHHhcCccccccccc---ccCC Confidence 999876 56689998765 2221 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.54 E-value=2.5e-15 Score=100.67 Aligned_cols=306 Identities=11% Similarity=0.091 Sum_probs=159.9 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) |.+--.-........+......++|+.|... + .+.|..+++.+..-+.++..-+.+. T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~-~----------------------~~~l~a~Y~~~~l~~~~vd~~a~d~ 57 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYSPSLSLTD-D----------------------LVQLEALWRDNWIANKVCIKRPEDM 57 (437) T ss_pred CchhhhhHhHHhcCCCccccceeecCccccc-c----------------------HHHHHHHHHhCchhhHHhhcchHHh Confidence 2111111000000011111123334443321 1 1122222222222222221111111 Q ss_pred HHh-h-----------------hccCCCcHHHHHHHHHHHHHhCCeeEEEEecCC---------ceeEEEEEecCcceee Q lcl|Aclame:pro 81 AST-Y-----------------IPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVT---------GQLIKLLTSPAKYTRR 133 (340) Q Consensus 81 ~~~-~-----------------~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~---------G~~~~L~pl~~~~~~~ 133 (340) ... + .-..+--++-+...+...-++|+||+.+.+++. |.+..+.++++..+.. T Consensus 58 ~r~~~~i~~~d~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~ 137 (437) T protein:vir:52 58 VRNWREIYSNDLNSKQLDLFTKFERSLKLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISP 137 (437) T ss_pred hcCCceEecCCCCHHHHHHHHHHHHhhcHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccc Confidence 110 0 000000112222333334489999999998763 6788899998876653 Q ss_pred ccc-----------CceEEEEeCCceEEEEccccEEEecCC---CCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 134 GVD-----------DSVFWFVENFTQPHEFAPDTVFHLLEP---DINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNG 199 (340) Q Consensus 134 ~~~-----------~~~~y~~~~~~~~~~~~~~dvih~r~~---~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG 199 (340) ... ...+|.+.+++..+.+.+..||||... -+.+.++|+|.++.+...|.....+.......+.+. T Consensus 138 ~~~~~~dp~s~~fg~p~~y~v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~ 217 (437) T protein:vir:52 138 TGTKDDDVLSPNFGRYSEYSILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFES 217 (437) T ss_pred cccccccccccccCcceEEEEecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHc Confidence 211 123678887777788999999999642 234677899999999999988888888877766654 Q ss_pred CCCceEEEeCC--CCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 200 AHAGYIMYVTD--PAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDA 277 (340) Q Consensus 200 ~~p~gil~~~~--~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~ 277 (340) ..+ ++++++ ..++....+.+.+.++......+.++++++..+ -+|..++.+..+ +-+......++||++ T Consensus 218 ~~~--v~k~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-----~~~e~~~~~~sg--l~~~l~~~~~~iaaa 288 (437) T protein:vir:52 218 KID--IFKIAGLSDKIAAGMENEVASVISAVQEIKSATNSLLLDAE-----NEYDRKELTFTG--LKDLLTEFRNAVAGA 288 (437) T ss_pred CCC--ceecchHHHHhcCCcHHHHHHHHHHHHHhcCCCceEEEcCC-----cceEEEecCcCC--HHHHHHHHHHHHHHH Confidence 433 344442 123333344555555543333444667776532 245555444333 234556778899999 Q ss_pred hcCCHHHcccccccccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhh-Cc---cc-eeecccc-cCCCC Q lcl|Aclame:pro 278 HRVPFQLMGGKPENIGSLGDVEKVAKVFVR-------NELSPLQDRFRE-VNDWL-GM---EV-IRFKEYT-LDNPE 340 (340) Q Consensus 278 f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~l-~~---~~-~rf~~~~-l~~~~ 340 (340) .+||-.+|.... .+++++.++..+.|+. ..|.|+++++-+ |-+.. |. ++ +.|++-. +++.| T Consensus 289 ~~iP~t~L~G~s--~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~~~~~~~f~pL~~~s~ke 363 (437) T protein:vir:52 289 ADMPVTILFGQS--VSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLPADWWFEFVPLTTVKQEQ 363 (437) T ss_pred hcCchhhhcCcC--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEeCCcCCcCHHH Confidence 999998774322 3456777888888886 567777766654 22222 21 21 4455322 22222 No 107 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.28 E-value=4.6e-12 Score=82.74 Aligned_cols=319 Identities=12% Similarity=0.039 Sum_probs=166.6 Q ss_pred CCCCCCCcccccccCCccc-eEEEECCCc--------eeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQK-MEAFTFGEP--------VPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSS 71 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~-~~~~~f~~p--------~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~ 71 (340) |+||++|+....+.+++.. +.+-+.++. ...+...++..-+ .-+=.+ .|.+-+..++|..+ T Consensus 1 m~kk~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iL---------r~~~~~-~ly~~m~~D~hi~s 70 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELL---------QGKDGL-LVYHKMLSDGTVKN 70 (448) T ss_pred CCCCCCCCcccCCcccccchhhhhhhccchhhhcccccccccccchhHhh---------ccccch-HHHHHHhhChHHHH Confidence 9999877754333322211 111111111 1001100000000 001011 12222344777777 Q ss_pred hhhhhhhhHHH---hhhccCCCcH---------------------HHHHHH---HHHHHHhCCeeEEEEec--CCce--e Q lcl|Aclame:pro 72 PIYVKRNVLAS---TYIPHPLLSR---------------------QDFSRF---ALDYLVFGNAFLEQRHS--VTGQ--L 120 (340) Q Consensus 72 ~i~~k~n~~~~---~~~pnp~~~~---------------------~~~~~~---~~~~ll~Gnay~~i~r~--~~G~--~ 120 (340) ++..+...+.. .+.|+.-... ..|..+ +++.+.+|-+.+|++.. ..|. + T Consensus 71 ~l~~Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~lda~~~G~s~~Eivw~~~~dg~~~~ 150 (448) T protein:vir:77 71 ALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADGKLIL 150 (448) T ss_pred HHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHHHhhhhcceeEEEEEeecCCCceee Confidence 77665544443 1233221110 012223 45667889999999875 3564 4 Q ss_pred EEEEEecCcce---eecccCceEEEEeCC--------ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHH Q lcl|Aclame:pro 121 IKLLTSPAKYT---RRGVDDSVFWFVENF--------TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESAT 189 (340) Q Consensus 121 ~~L~pl~~~~~---~~~~~~~~~y~~~~~--------~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~ 189 (340) ..|.+.++..+ ....++...+..+.+ .....++.+-++|.+.. ..+..||.+.+..+......-.... T Consensus 151 ~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~ 229 (448) T protein:vir:77 151 DKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALI 229 (448) T ss_pred ccccccCCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecC-CcCCcccchHHHHHHHHHHHHHhhH Confidence 46777776533 333444433332221 12234577788888654 3456799999999999999999999 Q ss_pred HHHHHHHHccCCCceEEEeCCC-CcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHH Q lcl|Aclame:pro 190 LFRRKYYQNGAHAGYIMYVTDP-AQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKK 268 (340) Q Consensus 190 ~~~~~~f~NG~~p~gil~~~~~-~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 268 (340) ++...|.+.-+.|--|.+.+.+ .-++++++.+.+...+..++.+++ +++. .|+++.=++....-..+.+.-+ T Consensus 230 ~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~--~iiP-----~g~~ie~~ea~~~~~~~~~~i~ 302 (448) T protein:vir:77 230 LLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHG--IILP-----DDWKFDTVDLKSAMPDAIPYLT 302 (448) T ss_pred HHHHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceE--EEec-----CCceEEEEecCCCccCHHHHHH Confidence 9999999998898888887643 335677888888887766555554 2222 3333333333334444667777 Q ss_pred hhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec--------ccccCCC Q lcl|Aclame:pro 269 ASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK--------EYTLDNP 339 (340) Q Consensus 269 ~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~--------~~~l~~~ 339 (340) +..++|+.+.--. .+- .+.++++++...+.........+.-.++.|++ ||++|...++.++ .+.++.. T Consensus 303 ~~d~~Isk~iLGq-tlT--s~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~~~ 379 (448) T protein:vir:77 303 YHDAGIARALGID-FNT--VQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFEME 379 (448) T ss_pred HHHHHHHHHHhcc-ccc--cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCC Confidence 8888888865332 111 11122223333333223445555666666665 6665543332222 1223333 Q ss_pred C Q lcl|Aclame:pro 340 E 340 (340) Q Consensus 340 ~ 340 (340) | T Consensus 380 e 380 (448) T protein:vir:77 380 E 380 (448) T ss_pred C Confidence 3 No 108 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.23 E-value=1.1e-11 Score=80.73 Aligned_cols=316 Identities=12% Similarity=0.032 Sum_probs=164.2 Q ss_pred CCCCCCCcccccccCCcc-ceEEEECCC--------ceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQ-KMEAFTFGE--------PVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSS 71 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~-~~~~~~f~~--------p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~ 71 (340) |+||++|+..-.+..++. ...+-+.+. |...+...+...-+. -+=. ..+.+-+..++|..+ T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr---------~~~~-~~ly~~m~~D~hi~s 70 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQ---------GKDG-LLVYHKMLSDGTVKN 70 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhc---------cccc-hHHHHHHhhChHHHH Confidence 999987764322221111 000101110 110011011100000 0000 112222334677777 Q ss_pred hhhhhhhhHHHh---hhccCCCc---------------------HHHHHHH---HHHHHHhCCeeEEEEec--CCce--e Q lcl|Aclame:pro 72 PIYVKRNVLAST---YIPHPLLS---------------------RQDFSRF---ALDYLVFGNAFLEQRHS--VTGQ--L 120 (340) Q Consensus 72 ~i~~k~n~~~~~---~~pnp~~~---------------------~~~~~~~---~~~~ll~Gnay~~i~r~--~~G~--~ 120 (340) ++..+...+... +.|+.... ...|..+ +++...+|.++++++.. ..|. + T Consensus 71 ~l~~Rk~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~lda~~~G~s~~Eivw~~~~~g~~~~ 150 (448) T protein:vir:79 71 ALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYENAYIYGMAAGEIVLTLGADGKLIL 150 (448) T ss_pred HHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHHHhhhhcceeEEEEeeecCCCceec Confidence 776554433321 22221111 1123333 45667899999999874 3564 4 Q ss_pred EEEEEecCcc---eeecccCceEEEEeCC--------ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHH Q lcl|Aclame:pro 121 IKLLTSPAKY---TRRGVDDSVFWFVENF--------TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESAT 189 (340) Q Consensus 121 ~~L~pl~~~~---~~~~~~~~~~y~~~~~--------~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~ 189 (340) ..|.+.++.. .....++...+..+.+ .....++.+-++|.... .....||.+.+..+.-....-..+. T Consensus 151 ~~l~~r~~~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~ 229 (448) T protein:vir:79 151 DKIVPIHPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALI 229 (448) T ss_pred ccccccCCccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecC-ccCCcccchhHHHHHHHHHHHHHHH Confidence 4677777653 3344444443333222 12345567778887654 3456799999999999999999999 Q ss_pred HHHHHHHHccCCCceEEEeCCC-CcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHH Q lcl|Aclame:pro 190 LFRRKYYQNGAHAGYIMYVTDP-AQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKK 268 (340) Q Consensus 190 ~~~~~~f~NG~~p~gil~~~~~-~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 268 (340) ++...|.+.-+.|--|.+.+.+ ..++++++.+.+...+..++.+++ +|+. .|+++.-++....-.++.+.-+ T Consensus 230 ~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~--~iiP-----~~~~ie~~ea~~~~~~~~~~i~ 302 (448) T protein:vir:79 230 LLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHG--IILP-----DDWKFDTVDLKSAMPDAIPYLT 302 (448) T ss_pred HHHHHHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceE--EEec-----CCceEEEEecCCCcccHHHHHH Confidence 9999999998888888877643 335677788888887776555554 2222 3444444444444455667778 Q ss_pred hhHHHHHHHhcCCHHHccccc---ccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec--------cccc Q lcl|Aclame:pro 269 ASAADLMDAHRVPFQLMGGKP---ENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK--------EYTL 336 (340) Q Consensus 269 ~~~~~I~~~f~VPp~~lG~~~---~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~--------~~~l 336 (340) +-.++|+.+. +|..- .++++++...+.......+.+.--+..|++ ||+.|...++.++ .+.+ T Consensus 303 ~~d~~Isk~i------LGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P~~~f 376 (448) T protein:vir:79 303 YHDAGIARAL------GIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFPRLTF 376 (448) T ss_pred HHHHHHHHHH------hhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEe Confidence 8888888754 33221 111222222222223334455556666654 6665543333322 1223 Q ss_pred CCCC Q lcl|Aclame:pro 337 DNPE 340 (340) Q Consensus 337 ~~~~ 340 (340) +..| T Consensus 377 ~~~e 380 (448) T protein:vir:79 377 EMEE 380 (448) T ss_pred cCCC Confidence 3333 No 109 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.21 E-value=1.1e-11 Score=80.57 Aligned_cols=308 Identities=8% Similarity=0.015 Sum_probs=143.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) |||||++.++...-.. +|+=.++.. ..+.++..-+....|..+++.+..-+.++..-+.+. T Consensus 5 m~~~~~~~~~~D~~~~-----~~~~~~g~~--------------~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~ 65 (435) T protein:vir:79 5 MSDKVKAITKEDGYNE-----IFGSKDGTF--------------RPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEM 65 (435) T ss_pred cccccccchhhcchhh-----hhccccccc--------------ccCcccCCcCCHHHHHHHHhcCchhhhhhccchHHh Confidence 9999877665322111 111001100 000000000111122222222222112221111111 Q ss_pred HHh------------h--hccCCCcHHHHHHHHHHHHHhCCeeEEEEe-c---------CCceeEEEEEecCcceeeccc Q lcl|Aclame:pro 81 AST------------Y--IPHPLLSRQDFSRFALDYLVFGNAFLEQRH-S---------VTGQLIKLLTSPAKYTRRGVD 136 (340) Q Consensus 81 ~~~------------~--~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r-~---------~~G~~~~L~pl~~~~~~~~~~ 136 (340) ... + .-..+--+.-+...+....++|.|++.+.. + ..|.+..|.++++..+.+... T Consensus 66 ~r~g~~i~g~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~~ 145 (435) T protein:vir:79 66 VTPGFKVDGVKNEKSFKSRWDELRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHER 145 (435) T ss_pred hcCCceecCCChHHHHHHHHHHhhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchhh Confidence 100 0 000001112233334445689999888764 2 234555788888765543221 Q ss_pred -----C-----ceEEEEeCCc--eEEEEccccEEEecCC------CCCCCcccccch-hhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 137 -----D-----SVFWFVENFT--QPHEFAPDTVFHLLEP------DINQEIYGLPEY-LSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 137 -----~-----~~~y~~~~~~--~~~~~~~~dvih~r~~------~~~~~~~G~sp~-~~a~~~i~~~~aa~~~~~~~f~ 197 (340) . ..+|++...+ ....+.+..||||.+. .+....+|.|++ +.+.+.+.....+.......+. T Consensus 146 ~~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~ 225 (435) T protein:vir:79 146 ETNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLR 225 (435) T ss_pred ccCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 1356666432 3567889999999642 233567899998 5777878777777777666544 Q ss_pred ccCCCceEEEeCC---CCcCHHHHHHHHHHHHHhcCc-ccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTD---PAQSATDVESLRDAMRNSKGL-GNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAAD 273 (340) Q Consensus 198 NG~~p~gil~~~~---~~~~~e~~~~l~~~~~~~~g~-~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 273 (340) ..... ++++++ ...+.+....+++.++..... ++.+.+++. .+ .-++..++.+..+ +-++.....++ T Consensus 226 ~~~~~--v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~-~~----~e~~e~~~~~lsg--l~~~~~~~~~~ 296 (435) T protein:vir:79 226 RKQQA--VWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGID-AT----DEEYEVLNSDVSG--VPEFLQEKIDR 296 (435) T ss_pred HhcCc--cccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEe-cC----CcceEEEecccCC--HHHHHHHHHHH Confidence 33322 233332 111223333444444332222 233444443 21 1235554443333 44566677889 Q ss_pred HHHHhcCCHHHc-cccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCccc-eeecccc-cCCCC Q lcl|Aclame:pro 274 LMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFVR-------NELSPLQDRFREVNDWLGMEV-IRFKEYT-LDNPE 340 (340) Q Consensus 274 I~~~f~VPp~~l-G~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~ln~~l~~~~-~rf~~~~-l~~~~ 340 (340) ||++.+||-..| |..+ +++ ++-+.....|+. ..+.|.++++-++.-+ .+++ +.|++-. .++.| T Consensus 297 iaaa~~IP~t~L~G~s~---~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~li~~-s~d~~~~f~pL~~~sekE 370 (435) T protein:vir:79 297 IVALTGIHEIIIKNKNT---GGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPFMIS-ETEWSIEFEPLSVPSDKD 370 (435) T ss_pred HHhhhCCCeeeeccCCc---cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCeEEeCCCCCCCHHH Confidence 999999999776 4432 333 444566666664 3456665554433211 1232 4566522 22222 No 110 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.09 E-value=5.1e-10 Score=71.53 Aligned_cols=314 Identities=13% Similarity=0.026 Sum_probs=160.3 Q ss_pred CCCCCCCcccccccCCc-cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhh-hhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAP-QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLA-KSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~-~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~-~~~r~~~~~~~~i~~k~n 78 (340) |+.+.+.+..+...... ++..+ . ...+++..+- ++...-|=. ..|. .+.+.++|..+++..+.. T Consensus 1 ~~~~~~~~~p~~~~g~~~~~~~~-~---------~~~~~~~~e~---~~~lr~~~~-~~ly~~m~e~D~~i~s~l~~rk~ 66 (469) T protein:vir:10 1 MTERVKTAAPVSEAGYVFGSGVV-D---------GWTVWDPFEQ---TPELQWPQS-VAVYSRMDNEDSRVTSLLEAISL 66 (469) T ss_pred CCCcccCCCCccchhhhhhcccc-c---------chhhcccccc---ccccccccc-hHHHHHHHhhChHHHHHHHHHHH Confidence 88876554443222111 11000 0 0111111110 000000100 1112 233446666666654443 Q ss_pred hHHH---hhhccCCCc--------------------------------HHHHHHHHHHHHHhCCeeEEEEecCC-----c Q lcl|Aclame:pro 79 VLAS---TYIPHPLLS--------------------------------RQDFSRFALDYLVFGNAFLEQRHSVT-----G 118 (340) Q Consensus 79 ~~~~---~~~pnp~~~--------------------------------~~~~~~~~~~~ll~Gnay~~i~r~~~-----G 118 (340) .+.. .+.|+.... ...+..++.+.+.+|.+..|++.... | T Consensus 67 av~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG 146 (469) T protein:vir:10 67 PIRSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDG 146 (469) T ss_pred HHhcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCC Confidence 3332 122221110 01122223345668999999987643 4 Q ss_pred --eeEEEEEecCcce---eecccCceEEEEe-------------CCceEEEEccccEEEecCCCCCCCcccccchhhhHH Q lcl|Aclame:pro 119 --QLIKLLTSPAKYT---RRGVDDSVFWFVE-------------NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALN 180 (340) Q Consensus 119 --~~~~L~pl~~~~~---~~~~~~~~~y~~~-------------~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~ 180 (340) .+..|.+.|+.++ ....+++...... .+.....+++...|+.++.......||.+.+..+.. T Consensus 147 ~~~~~~l~~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~ 226 (469) T protein:vir:10 147 RFWLRKLAPRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYK 226 (469) T ss_pred ceeeeeeeecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHHH Confidence 2566777776543 2333333221111 112234566666554444444566899999999999 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhH Q lcl|Aclame:pro 181 SAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATK 260 (340) Q Consensus 181 ~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d 260 (340) ....-....++...|.+.-+.|--|.+.+. ..++++++.+.+..++..++.+++-+ + +.|+++.-++.+... T Consensus 227 ~~~fK~~~~~~w~~f~EryG~P~~vgky~~-~a~~~ek~~l~~a~~~~~~g~~a~~i--i-----p~~~~ie~~ea~g~~ 298 (469) T protein:vir:10 227 HWLLKDKLLRIEAATAERNGMGIPVGTASS-ATDEDEVRKMAALARSVRGGINAGVG--L-----AQGQILELLGVSGNL 298 (469) T ss_pred HHHHHHHHHHHHHHHHHHcCCcceEEecCC-CCCHHHHHHHHHHHHHHhcCCceEEE--c-----cCCceEEEeecCCCc Confidence 999999999999999999888888877654 46888888999888887655444322 2 244555555555666 Q ss_pred HHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec------- Q lcl|Aclame:pro 261 DDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK------- 332 (340) Q Consensus 261 ~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~------- 332 (340) ..|.+.-++-.++|+.+.-=. .+.. +.++++++-.+. ......+.+.-.++.|++ ||+.|...++.++ T Consensus 299 ~~~~~li~~~d~~Isk~iLG~-tlTs--~~~gGS~a~~~v-h~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~ 374 (469) T protein:vir:10 299 PDIRRAIEGHDRSIALSGLAH-FLNL--DGKGGSYALASV-LEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPA 374 (469) T ss_pred hHHHHHHHHHHHHHHHHHhcc-cccc--cCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc Confidence 679999999999998865322 1111 112234432222 223333445555555554 5554422211111 Q ss_pred -ccccCCCC Q lcl|Aclame:pro 333 -EYTLDNPE 340 (340) Q Consensus 333 -~~~l~~~~ 340 (340) .|.++..| T Consensus 375 P~~~~~~~e 383 (469) T protein:vir:10 375 PVLTFDPIG 383 (469) T ss_pred cEEEecCCC Confidence 11222222 No 111 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.04 E-value=7.1e-10 Score=70.73 Aligned_cols=320 Identities=10% Similarity=0.109 Sum_probs=144.9 Q ss_pred CCCCCCCcccccccCC-ccceEEEECCCceeecCcchhhheeeeee-c--Cchhhc-ccchHHhhhhhhcchhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASA-PQKMEAFTFGEPVPVLDKRDILDYVECIS-N--GKWYEP-PVSFSGLAKSLRSAVHHSSPIYV 75 (340) Q Consensus 1 m~~~~~~~~~~~~~~~-~~~~~~~~f~~p~~~~~~~~~~~~~~~~~-~--~~~~~~-pv~~~~l~~~~r~~~~~~~~i~~ 75 (340) |.-+++.+........ ...|-.=++.+..+ ....+..... + ..||.+ -+.-+.|..+++.+..-+.++.. T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r~iVd~ 122 (537) T protein:vir:10 48 MAIRDHAIAMMPKVDGSHPDMAMDGLDVEGG-----TFSAYANPNLSEGLVLWYAQQAFIGHQMCALIATHWLVNKACSQ 122 (537) T ss_pred CCCCCccCcccccccccccchhccccccchh-----hhhhhccccccchhhhhccccCCccHHHHHHHHhCchhhhhhhh Confidence 3333332221111110 00000001111110 0001111100 0 122222 23334455555555543444433 Q ss_pred hhhhHHHh-hh--------------------ccCCCcHHHHHHHHHHHHHhCCeeEEEEe---c-------------CCc Q lcl|Aclame:pro 76 KRNVLAST-YI--------------------PHPLLSRQDFSRFALDYLVFGNAFLEQRH---S-------------VTG 118 (340) Q Consensus 76 k~n~~~~~-~~--------------------pnp~~~~~~~~~~~~~~ll~Gnay~~i~r---~-------------~~G 118 (340) -+...... +. ...+..+.-+...+....++|.+++.+.- + ..| T Consensus 123 ~A~d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg 202 (537) T protein:vir:10 123 MPRDAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPG 202 (537) T ss_pred hhHHhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHhcccccceEEEEeecCcCCccccccccccccccc Confidence 33322211 10 00011112222223333578999888753 2 123 Q ss_pred eeEEEEEecCcceeecc--------cCc-----eEEEEeCCceEEEEccccEEEecCCCC------CCCcccccchhhhH Q lcl|Aclame:pro 119 QLIKLLTSPAKYTRRGV--------DDS-----VFWFVENFTQPHEFAPDTVFHLLEPDI------NQEIYGLPEYLSAL 179 (340) Q Consensus 119 ~~~~L~pl~~~~~~~~~--------~~~-----~~y~~~~~~~~~~~~~~dvih~r~~~~------~~~~~G~sp~~~a~ 179 (340) ....|..+++..+.... ... .+|.+. + ..+.+..|||+....+ ..+++|+|.++.+. T Consensus 203 ~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~--g--~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~ 278 (537) T protein:vir:10 203 AYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLIN--G--KKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIM 278 (537) T ss_pred ceeEEEEechhhcccccchhhhccCCccccCCceeeeec--C--eEecceeEEEecCCCCchhhhcccCcccccHHHHHH Confidence 45667777776554311 111 234443 2 3578899999964422 23567999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhh Q lcl|Aclame:pro 180 NSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVAT 259 (340) Q Consensus 180 ~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~ 259 (340) ..|.....+.......+......-.-+.......++++..+.-+.+... -+|.+. +++... +-+|..++.+.. T Consensus 279 ~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~~~--r~n~g~-~~id~e----~e~~e~~~~~ls 351 (537) T protein:vir:10 279 ERVYAAERTANEGPMLAMTKRQTVLKVDAAQVLANKQQFDETMSWWTAT--RDNYQV-RVVDKD----NEDVVQIDTTLN 351 (537) T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcCHHHHHHHHHHHHhh--cCCcce-eEecCC----CceeEEEeccCC Confidence 9998777777766666665544433222222223444433333333332 344444 444321 233444433222 Q ss_pred HHHHHHHHHhhHHHHHHHhcCCHHHc-ccccccccccccHHHHHHHHH------HHHHHHHHHHHHHHH-H-hhCccc-- Q lcl|Aclame:pro 260 KDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSLGDVEKVAKVFV------RNELSPLQDRFREVN-D-WLGMEV-- 328 (340) Q Consensus 260 d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~~n~e~~~~~f~------~~~l~P~~~~ie~ln-~-~l~~~~-- 328 (340) . +-+......+.||++.+||...| |..+. |..++-+...+.|+ +..|.|.++++.++- + +++.+. T Consensus 352 g--l~~~l~~~~~~iAa~~~IP~t~L~G~sp~--GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~~~~~ 427 (537) T protein:vir:10 352 D--LDKVIMNQYQLVCAIARTPAPKMLGTVPT--GFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRKRIRV 427 (537) T ss_pred C--HHHHHHHHHHHHHhhhCCCceeeccCCcc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcce Confidence 2 33556677788999999999855 54332 22233455666666 234788887776532 2 233321 Q ss_pred -eeeccc-ccCCCC Q lcl|Aclame:pro 329 -IRFKEY-TLDNPE 340 (340) Q Consensus 329 -~rf~~~-~l~~~~ 340 (340) +.|++- ..++.| T Consensus 428 ~i~f~pL~~~s~kE 441 (537) T protein:vir:10 428 KVEFPPMDAPKESE 441 (537) T ss_pred EEEeCCCCCCCHHH Confidence 345432 222332 No 112 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.00 E-value=9.4e-10 Score=70.07 Aligned_cols=321 Identities=10% Similarity=0.078 Sum_probs=152.0 Q ss_pred CCCCCCCc----ccccccCCccceEEEECCCceeecCcchhhhe-eeeee----cCchh-hcccchHHhhhhhhcchhhh Q lcl|Aclame:pro 1 MSKRKPRK----AVAMTASAPQKMEAFTFGEPVPVLDKRDILDY-VECIS----NGKWY-EPPVSFSGLAKSLRSAVHHS 70 (340) Q Consensus 1 m~~~~~~~----~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~-~~~~~----~~~~~-~~pv~~~~l~~~~r~~~~~~ 70 (340) |-+||+.. .+++.+-.++.+..+....-...+. .++ ++... ...|+ ...+..+.+..+++.+..-+ T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a----~~~g~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~r 98 (532) T protein:vir:94 23 VDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMA----MDYGLQTGRNGRNALSFVEATSWPGFPTLALLAQLPEYR 98 (532) T ss_pred hhhhhhhhhhhhhhhhhhhcccccccccccccccccc----cccccCcccccccccccccccccchHHHHHHHHcCchhh Confidence 44333221 1111111111111111111000000 000 00000 01122 11233445555665555434 Q ss_pred hhhhhhhhhHHHhhhc----c-----------------CCCcHHHHHHHHHHHHHhCCeeEEEEecC------------- Q lcl|Aclame:pro 71 SPIYVKRNVLASTYIP----H-----------------PLLSRQDFSRFALDYLVFGNAFLEQRHSV------------- 116 (340) Q Consensus 71 ~~i~~k~n~~~~~~~p----n-----------------p~~~~~~~~~~~~~~ll~Gnay~~i~r~~------------- 116 (340) .++..-++........ + .+--+.-+...+....++|.+++++.... T Consensus 99 ~~Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l 178 (532) T protein:vir:94 99 TMHETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLL 178 (532) T ss_pred hhhccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhHHHHHHHHHHhhhcccceEEEEEeccCCccccccccccc Confidence 4443333322211000 0 00001111222233358999988775432 Q ss_pred ------CceeEEEEEecCcceeecccC------c-----eEEEEeCCceEEEEccccEEEecCCCC------CCCccccc Q lcl|Aclame:pro 117 ------TGQLIKLLTSPAKYTRRGVDD------S-----VFWFVENFTQPHEFAPDTVFHLLEPDI------NQEIYGLP 173 (340) Q Consensus 117 ------~G~~~~L~pl~~~~~~~~~~~------~-----~~y~~~~~~~~~~~~~~dvih~r~~~~------~~~~~G~s 173 (340) .|.+.+|.++++..+.+.... . .+|++..+ ..+.+..||||..... ..+++|+| T Consensus 179 ~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~~g---~~iH~SRli~f~g~~~p~~~~~~~~~~G~S 255 (532) T protein:vir:94 179 SPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIATSG---KKIHSSRIHTVVGRPVGDMLKAAYSFRGVS 255 (532) T ss_pred cccccccceeeEEEeechheecccccccccccccccCCceeEEEccC---eeeccceEEEecCCCchhhhcccccccccc Confidence 334567888888766543211 1 23444332 2577899999964322 23457999 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC-CCCcCHHHHHHHHHHHHHhc-CcccccccccccCCccccccce Q lcl|Aclame:pro 174 EYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT-DPAQSATDVESLRDAMRNSK-GLGNFKNLFFYSPNGKPDGIKI 251 (340) Q Consensus 174 p~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~-~~~~~~e~~~~l~~~~~~~~-g~~n~~~~~vl~~~~~~~g~~~ 251 (340) .++.+...+.....+..........-.. .. +++. ...++.+..+.+.+.++... +-+|. +++++..+ .-+| T Consensus 256 vlq~~~~~l~~~~~t~~~~~~l~~~~~~-~v-~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n~-g~~~id~~----~e~~ 328 (532) T protein:vir:94 256 ISQLAMPYVDNWLRTRQSVSDTVKQFSM-TN-LATDMAQLLAPGGAQSLDARLQLFNLYRDNR-NIGALDKG----TEEI 328 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-ce-eeechHHhhcchhHHHHHHHHHHHHhhcCCc-cceEEcCC----Ccee Confidence 9999999888877777666665444332 22 2322 13356667788888776543 33443 44444321 1234 Q ss_pred eeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc-cccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHH- Q lcl|Aclame:pro 252 VPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFVR-------NELSPLQDRFREVN- 321 (340) Q Consensus 252 ~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~ln- 321 (340) ..++.+..+ +-++.....+.||++.+||...| |..+ +++ ++-+.....|+. ..|.|.++.|-++. T Consensus 329 e~~~~~lsg--l~~~l~~~~~~iAaa~~IP~t~LfG~sp---~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~ 403 (532) T protein:vir:94 329 QQTNTPLSG--LDSLQAQSQEQMAAVSHIPLVKLLGITP---NGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQ 403 (532) T ss_pred EEEecccCC--HHHHHHHHHHHHHhHhCCCeeeeecCCc---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 444433332 33455667789999999999865 5433 233 334555666664 45788877776533 Q ss_pred Hh-hCc---c-ceeeccc-ccCCCC Q lcl|Aclame:pro 322 DW-LGM---E-VIRFKEY-TLDNPE 340 (340) Q Consensus 322 ~~-l~~---~-~~rf~~~-~l~~~~ 340 (340) .. +|. + -+.|++- ..++.| T Consensus 404 ~s~~g~~~~d~~~~f~pL~~~s~kE 428 (532) T protein:vir:94 404 LSEYGQIDPGLAWEWSPLMELDDKE 428 (532) T ss_pred HHhcCCCCCCceEEeCCCCCCCHHH Confidence 22 221 2 2456652 233333 No 113 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=98.91 E-value=6.3e-09 Score=65.55 Aligned_cols=324 Identities=10% Similarity=0.007 Sum_probs=172.5 Q ss_pred CCCCC---CCccccc--ccCCccceEE---EECCCceeecCcchhhheeeeeecCchhhcccchHHhhhh-hhcchhhhh Q lcl|Aclame:pro 1 MSKRK---PRKAVAM--TASAPQKMEA---FTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKS-LRSAVHHSS 71 (340) Q Consensus 1 m~~~~---~~~~~~~--~~~~~~~~~~---~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~-~r~~~~~~~ 71 (340) |++=- .+|-... ....+.++.. ..=+.|..-++-..+-.-+..+..|++. ....|.+- .+.++|..+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~----~~~~L~~~m~e~D~~i~s 76 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQ----AQAELFMDMEERDAHLFA 76 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHH----HHHHHHHHHHhhChHHHH Confidence 65421 1111100 1111111111 1112344444444444444444444432 12233333 346888888 Q ss_pred hhhhhhhhHHHh---hhccCCCcH----------------HHHHHHHH---HHHHhCCeeEEEEecCC---ceeEEEEEe Q lcl|Aclame:pro 72 PIYVKRNVLAST---YIPHPLLSR----------------QDFSRFAL---DYLVFGNAFLEQRHSVT---GQLIKLLTS 126 (340) Q Consensus 72 ~i~~k~n~~~~~---~~pnp~~~~----------------~~~~~~~~---~~ll~Gnay~~i~r~~~---G~~~~L~pl 126 (340) ++..+..-.... +.|....+. ..|..++. +-..+|.+.++++.... ..+..+.+. T Consensus 77 ~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~~~~r 156 (528) T protein:vir:10 77 EMSKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCMDGVGHGYSAIELDWSLQGREWLPQAFDHR 156 (528) T ss_pred HHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeeee Confidence 887766555542 333211110 12444544 44579999999986543 346789999 Q ss_pred cCcceeecccCceEEEEeCC-ceEEEEcccc-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 127 PAKYTRRGVDDSVFWFVENF-TQPHEFAPDT-VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGY 204 (340) Q Consensus 127 ~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~d-vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~g 204 (340) |+.+.....+++..+..+.+ .....+++.. |+|.. .......||.+.+..+......-..+.++...|.+.-+.|-- T Consensus 157 ~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~-~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (528) T protein:vir:10 157 PQSWFQLNPDDQDELRLRDNSIAGEVLQPFGWIMHKP-RSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIR 235 (528) T ss_pred cccceeeccCCCcEEeccCCCCCceeecCCCeEEEee-cCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeE Confidence 99888776666655555443 2345566665 55553 444567789999999999999999999999999999999988 Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHH Q lcl|Aclame:pro 205 IMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQL 284 (340) Q Consensus 205 il~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~ 284 (340) |.+++. ..++++++.+.+.+.+..+. + ..++ |.+ ..++++..+. ..-+-|.+.-++-.++|+.+.-= ..+ T Consensus 236 igky~~-~a~~~ek~~L~~al~~i~~~--~--~~ii-P~~--~~ie~~ea~~-~~~~~f~~li~~~d~~Isk~iLG-qtl 305 (528) T protein:vir:10 236 LGKYPP-GTPDEEKVTLLRAVTGLGHA--A--AGII-PES--MSIDFQEASK-GSAEPFMAMMRWCDDSMSKAILG-GTL 305 (528) T ss_pred EEecCC-CCCHHHHHHHHHHHHHHhhC--c--EEEe-cCC--ceeEEeecCC-CChhHHHHHHHHHHHHHHHHHhh-hhh Confidence 888764 46788888888888765321 1 2232 222 3455665443 23345888888899999886411 122 Q ss_pred ccc-ccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec-----------c--cccCCCC Q lcl|Aclame:pro 285 MGG-KPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK-----------E--YTLDNPE 340 (340) Q Consensus 285 lG~-~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~-----------~--~~l~~~~ 340 (340) ... ..+.+|+++-.+. ...-..+.+.--++.|++ ||+.|...++.++ . |+....+ T Consensus 306 Ts~~~~g~~gS~Alg~v-h~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~e 375 (528) T protein:vir:10 306 TSQTSESGGGAYALGQV-HNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRA 375 (528) T ss_pred hccccccccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcc Confidence 111 1111223321111 222233344444445543 5544422111111 1 2222222 No 114 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=98.88 E-value=1.3e-09 Score=69.23 Aligned_cols=299 Identities=9% Similarity=0.005 Sum_probs=138.2 Q ss_pred eEEEECCCceeecCcchhhheeeeeecCchhhcc--cchHHhhhhhhcchhhhhhhhhhhhhHHHh-hh--c-------- Q lcl|Aclame:pro 20 MEAFTFGEPVPVLDKRDILDYVECISNGKWYEPP--VSFSGLAKSLRSAVHHSSPIYVKRNVLAST-YI--P-------- 86 (340) Q Consensus 20 ~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~p--v~~~~l~~~~r~~~~~~~~i~~k~n~~~~~-~~--p-------- 86 (340) |..|+-+ -+.+.++....+..+-.- ...+.|..+++.+.--+.++..-+...... +. - T Consensus 1 ~~~~~~d---------~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~~~~~ 71 (427) T protein:vir:10 1 MKIVKHD---------GYNDIFNGGADGSPKPFFMSDASYHVGSFYNDNATAKRIVDVIPEEMVTAGFKMSGVKDEKEFK 71 (427) T ss_pred CCccccc---------hHHHHhhcCCCCcccCccccCchHHHHHHHHcCchhhhhhccchHHhhcCCccccCccHHHHHH Confidence 1111100 011111111111111000 011233333333333222222222211110 00 0 Q ss_pred ---cCCCcHHHHHHHHHHHHHhCCeeEEEEe----------cCCceeEEEEEecCcceeeccc----------CceEEEE Q lcl|Aclame:pro 87 ---HPLLSRQDFSRFALDYLVFGNAFLEQRH----------SVTGQLIKLLTSPAKYTRRGVD----------DSVFWFV 143 (340) Q Consensus 87 ---np~~~~~~~~~~~~~~ll~Gnay~~i~r----------~~~G~~~~L~pl~~~~~~~~~~----------~~~~y~~ 143 (340) ..+--+.-+...+...-++|.+++.+.- +..|.+..|.++++..+.+... ...+|.+ T Consensus 72 ~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P~~y~v 151 (427) T protein:vir:10 72 SLWDSYKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGEPEIYKV 151 (427) T ss_pred HHHHHhhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCccccccCcceEEEE Confidence 0000111222333344589999988743 3467788999988766543221 1235667 Q ss_pred eCCc--eEEEEccccEEEecCCC------CCCCcccccchh-hhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC--C Q lcl|Aclame:pro 144 ENFT--QPHEFAPDTVFHLLEPD------INQEIYGLPEYL-SALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDP--A 212 (340) Q Consensus 144 ~~~~--~~~~~~~~dvih~r~~~------~~~~~~G~sp~~-~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~--~ 212 (340) .+++ ..+.+.+..|||+.+.. +....+|.|++. ++.+.+.....+.......+...... ++++++- . T Consensus 152 ~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~--v~k~~~l~~~ 229 (427) T protein:vir:10 152 SPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQA--VWKVKGLAEM 229 (427) T ss_pred ecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchhHHHH Confidence 6533 34678899999996442 245678999986 56676776666666655554443222 3343321 0 Q ss_pred c-CHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc-cccc Q lcl|Aclame:pro 213 Q-SATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM-GGKP 289 (340) Q Consensus 213 ~-~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~ 289 (340) + +.+....+++.++.. ..-+|.+.+++... +-+|..++.+... +-++.....++||++.+||-..| |..+ T Consensus 230 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~-----~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP~t~L~G~sp 302 (427) T protein:vir:10 230 CDDDDAQYAARLRLAQVDDNSGVGRAIGIDAE-----TEEYDVLNSDISG--VPEFLSSKMDRIVSLSGIHEIIIKNKNV 302 (427) T ss_pred hcCccchHHHHHHHHHHHHhcCcccceeeecC-----CCceeEEecccCC--hHHHHHHHHHHHHhhhCCCeeeeccCCc Confidence 1 222233333344322 22234444544321 2234544433332 34556677889999999999876 4333 Q ss_pred cccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCccc-eeecccc-cCCCC Q lcl|Aclame:pro 290 ENIGSL-GDVEKVAKVFVR-------NELSPLQDRFREVNDWLGMEV-IRFKEYT-LDNPE 340 (340) Q Consensus 290 ~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~ln~~l~~~~-~rf~~~~-l~~~~ 340 (340) +++ ++-+...+.|+. ..|.|.++++-++.-+ .+++ +.|++-. +++.| T Consensus 303 ---~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~~-s~~~~~~f~pL~~~s~kE 359 (427) T protein:vir:10 303 ---GGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIVD-EEEWSIEFEPLSVPSKKE 359 (427) T ss_pred ---cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEeCCCCCCCHHH Confidence 333 344666666664 4566666555443211 1222 4566422 22222 No 115 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=98.88 E-value=2.5e-09 Score=67.74 Aligned_cols=300 Identities=9% Similarity=0.022 Sum_probs=141.4 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) |.|-=.-...-...+ -....|+.|... .++.+..+++.+..-+.++..-+... T Consensus 1 ~~~~D~~~n~~~gg~----~~~~~~~~~~~~-----------------------~~~~l~a~Y~~~~l~~~~Vd~~aed~ 53 (422) T protein:vir:10 1 MVKTDSYANIFLGGS----DGSEIYGSLQNQ-----------------------APTILASLYADNALVRRIIDTIPETA 53 (422) T ss_pred CccchhhHHHHcCCC----CCccccCccccc-----------------------CHHHHHHHHHhChhhHHHHhhhhHHH Confidence 443321110000000 001122333221 11122222222222122221111111 Q ss_pred HHh-h-------------hccCCCcHHHHHHHHHHHHHhCCeeEEEEe-c---------CCceeEEEEEecCcceeecc- Q lcl|Aclame:pro 81 AST-Y-------------IPHPLLSRQDFSRFALDYLVFGNAFLEQRH-S---------VTGQLIKLLTSPAKYTRRGV- 135 (340) Q Consensus 81 ~~~-~-------------~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r-~---------~~G~~~~L~pl~~~~~~~~~- 135 (340) ... + .-..+--+.-+...+....++|.|++.+.. + ..|.+..|.++++..+.+.. T Consensus 54 ~r~g~~i~~~~~~~~~~~~~~~l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~ 133 (422) T protein:vir:10 54 LAAGFHIDGIDDEPAFWSRWDDLEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTR 133 (422) T ss_pred hcCCccccCCCHHHHHHHHHHHhhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhc Confidence 100 0 000011122233334445689999988865 2 24566678888877655432 Q ss_pred ----c-----CceEEEEeCCc--eEEEEccccEEEecCCC------CCCCcccccchhh-hHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 136 ----D-----DSVFWFVENFT--QPHEFAPDTVFHLLEPD------INQEIYGLPEYLS-ALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 136 ----~-----~~~~y~~~~~~--~~~~~~~~dvih~r~~~------~~~~~~G~sp~~~-a~~~i~~~~aa~~~~~~~f~ 197 (340) . ...+|.+..++ ..+.+.+..|||+.... +....+|.|++.. +.+.+.....+.......+. T Consensus 134 ~~dp~s~~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~ 213 (422) T protein:vir:10 134 EENPRNARFGEPLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLK 213 (422) T ss_pred ccCccccccCcceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1 11356665542 34678888999996432 3456689999986 66877777777766666554 Q ss_pred ccCCCceEEEeCC--CC-cCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTD--PA-QSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAAD 273 (340) Q Consensus 198 NG~~p~gil~~~~--~~-~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~ 273 (340) ..... ++++++ .. .+.+....++++++.. ..-+|.+.+++.. .+-++.+++.+..+ +-++.....++ T Consensus 214 ~~~~~--v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~-----~~e~~e~~~~~lsg--l~~~~~~~~~~ 284 (422) T protein:vir:10 214 RKQQA--VWKAKGLAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDA-----ESEEYSVLNSDIGG--IDAFLDKKFDR 284 (422) T ss_pred Hhccc--cccchhHHHhcCCccchHHHHHHHHHHHHhcCCccceeEec-----CCcceEEEecccCC--hHHHHHHHHHH Confidence 43322 333332 11 1233344444444432 2223444444432 12345555544443 45667778899 Q ss_pred HHHHhcCCHHHc-cccccccccc-ccHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCcc-ceeecccc-cCCCC Q lcl|Aclame:pro 274 LMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFVR-------NELSPLQDRFREVNDWLGME-VIRFKEYT-LDNPE 340 (340) Q Consensus 274 I~~~f~VPp~~l-G~~~~~~~~~-~n~e~~~~~f~~-------~~l~P~~~~ie~ln~~l~~~-~~rf~~~~-l~~~~ 340 (340) ||++.+||-..| |..+ +++ ++-+...+.|+. ..+.|.++++-++.-+ .++ -+.|++-. +++.| T Consensus 285 iaaa~~IP~t~L~G~s~---~Glnatgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~i~~-s~~~~~~f~pL~~~seke 358 (422) T protein:vir:10 285 IVALSGIHEIILKNKNV---GGVSSSQNTALETFHKLVDRKRNAELLPILEFLIPFIVN-AEEWSVEFNPLAQESSKD 358 (422) T ss_pred HHhhhCCCeeeeccCCc---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCcEEEeCCCCCCCHHH Confidence 999999999877 4332 344 344666666664 3456655554433211 122 14566422 22222 No 116 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=98.87 E-value=2.8e-09 Score=67.49 Aligned_cols=317 Identities=13% Similarity=0.096 Sum_probs=149.6 Q ss_pred CCCCCCCcccccccCCccceEEE-E--------------CCCceeecCcchhh--heeeeeecCchhhcccchHHhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAF-T--------------FGEPVPVLDKRDIL--DYVECISNGKWYEPPVSFSGLAKSL 63 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~--------------f~~p~~~~~~~~~~--~~~~~~~~~~~~~~pv~~~~l~~~~ 63 (340) |+++...+.......+.+.+..+ . |+.|.. ++ +..+ -|..-+-....+..|.. .+. T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~-~~-~~~l~~lY~~~~l~r~iVd~~a~-----d~~ 73 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQK-LD-LKACENLYASNSIAMNIVDIISE-----DMV 73 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCcccc-cC-HHHHHHHHHhCCccchhhccchH-----Hhh Confidence 99996554333222222222111 1 111111 00 0000 00000011112222211 112 Q ss_pred hcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCC-------------c---eeEEEEEec Q lcl|Aclame:pro 64 RSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVT-------------G---QLIKLLTSP 127 (340) Q Consensus 64 r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~-------------G---~~~~L~pl~ 127 (340) |. ..+-.+...........+. +.+--+.-+...+....++|.+|+++..... + .+..|.|+. T Consensus 74 r~-g~~i~~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~ 151 (461) T protein:vir:80 74 RA-GWSLKTDNKEMKKNIESKW-RKLKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFN 151 (461) T ss_pred cC-CeeeecCCHHHHHHHHHHH-HHhhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEecc Confidence 21 1111111111110111000 0011122344445566799999998854211 1 222333332 Q ss_pred Cccee-----ecccC-----ceEEEEeC-------------CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHH Q lcl|Aclame:pro 128 AKYTR-----RGVDD-----SVFWFVEN-------------FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWL 184 (340) Q Consensus 128 ~~~~~-----~~~~~-----~~~y~~~~-------------~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~ 184 (340) +..+. ..... ..+|.+.. +.....+.+..|||+.+....+..+|.|.++.+...+.. T Consensus 152 ~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~ 231 (461) T protein:vir:80 152 TQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITV 231 (461) T ss_pred ccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHHHHHH Confidence 22211 11111 13455543 223467889999999877666788899999999999988 Q ss_pred HHHHHHHHHHHHHccCCCceEEEeCC-CCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHH Q lcl|Aclame:pro 185 NESATLFRRKYYQNGAHAGYIMYVTD-PAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDF 263 (340) Q Consensus 185 ~~aa~~~~~~~f~NG~~p~gil~~~~-~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf 263 (340) ...+.........+-..+ ++++++ ..+..++...+.+.++..++ | ..++++... + ++..++.+..+ + T Consensus 232 ~~~~~~~~~~l~~~~~~~--v~k~~~l~~~~~~~~~~~~~~~~~~~~--~-~g~~~~d~~---e--~~e~~~~~lsg--l 299 (461) T protein:vir:80 232 MDTSLWSVGQILYDFAFK--VYKTDDIDALNKDDKANLTAMLDFMFR--T-EALAIIKGD---E--QLTKESTNVSG--M 299 (461) T ss_pred HHHHHHHHHHHHHHhCCC--ceecchHHhhhchHHHHHHHHHHHhcC--C-ceEEEEcCC---c--ceEEEecCcCC--H Confidence 888777777766665443 444442 12334555566666665543 2 335555432 2 34444443333 3 Q ss_pred HHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHH-------HHHHHHHHHHHH-HHHhhCc--------- Q lcl|Aclame:pro 264 FNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVR-------NELSPLQDRFRE-VNDWLGM--------- 326 (340) Q Consensus 264 ~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~ie~-ln~~l~~--------- 326 (340) -++.+.....||++-+||...|+.... ++.++.+...+.|+. ..+.|+++++.+ |-...+. T Consensus 300 ~~~l~~~~~~iaa~s~iP~t~L~G~s~--g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~ 377 (461) T protein:vir:80 300 KDLLDYGWDYLAGAVRMPKTVLKGQEA--GTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDS 377 (461) T ss_pred HHHHHHHHHHHhhhhcCCeeeeecccC--CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc Confidence 456667888999999999987643332 445666766766653 345666666544 2111111 Q ss_pred -cc-eeecccc-cCCCC Q lcl|Aclame:pro 327 -EV-IRFKEYT-LDNPE 340 (340) Q Consensus 327 -~~-~rf~~~~-l~~~~ 340 (340) ++ +.|++-. .++.| T Consensus 378 ~~~~i~f~~L~~~s~ke 394 (461) T protein:vir:80 378 FEWAIEFNPLWNLDSKT 394 (461) T ss_pred cceEEEeCCCCCCCHHH Confidence 11 4455421 22222 No 117 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=98.86 E-value=1.4e-08 Score=63.60 Aligned_cols=323 Identities=10% Similarity=0.053 Sum_probs=172.2 Q ss_pred CCCCC---CCccccccc--CCccceE----EEECCCceeecCcchhhheeeeeecCchhhcccchHHhh-hhhhcchhhh Q lcl|Aclame:pro 1 MSKRK---PRKAVAMTA--SAPQKME----AFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLA-KSLRSAVHHS 70 (340) Q Consensus 1 m~~~~---~~~~~~~~~--~~~~~~~----~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~-~~~r~~~~~~ 70 (340) |++=- .+|-..... ..+.++. .|+ +.|..-++-.++..-+.-...|++. ....|. .+.+.++|.. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~gltp~~l~~iLr~a~~gd~~----~~~~L~e~m~e~D~~i~ 75 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFA-QHPAKGLTPAKLARILVEAEQGNLQ----AQAELFMDMEERDAHLF 75 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhc-ccCcCCCCHHHHHHHHHhhhCCCHH----HHHHHHHHHHhhChHHH Confidence 66531 111111000 0111111 111 2344444433333334444444321 122333 2334678888 Q ss_pred hhhhhhhhhHHHh---hhccCCCcH----------------HHHHHHH---HHHHHhCCeeEEEEecCCc---eeEEEEE Q lcl|Aclame:pro 71 SPIYVKRNVLAST---YIPHPLLSR----------------QDFSRFA---LDYLVFGNAFLEQRHSVTG---QLIKLLT 125 (340) Q Consensus 71 ~~i~~k~n~~~~~---~~pnp~~~~----------------~~~~~~~---~~~ll~Gnay~~i~r~~~G---~~~~L~p 125 (340) +++..+....... +.|+...+. ..|..++ ++...+|-+..+++....| .+..+.+ T Consensus 76 s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~g~~~~~~l~~ 155 (526) T protein:vir:99 76 AEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHHHhhhhcceeEEEEEeecCCceeEEEeee Confidence 8887776665543 333322111 1244444 4556799999999865533 4678999 Q ss_pred ecCcceeecccCceEEEEeCC-ceEEEEcccc-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 126 SPAKYTRRGVDDSVFWFVENF-TQPHEFAPDT-VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAG 203 (340) Q Consensus 126 l~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~d-vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~ 203 (340) .++.+.+...+.+....++.+ .....+++.. |+|.... ..+..||.+.+..+.-.......+.++...|.+.-+.|- T Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~i~~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~ 234 (526) T protein:vir:99 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRA-RSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) T ss_pred ecccceeeccCCCcEEEecCCCCCceeecCCCeEEEeecC-CcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCce Confidence 999888877666655544443 3445566664 5665433 456779999999999999999999999999999999998 Q ss_pred eEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHH Q lcl|Aclame:pro 204 YIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQ 283 (340) Q Consensus 204 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~ 283 (340) -|.+++. ..++++++.+.+.+.+..+ ++ ..++.. + ..++++..+. ..-+-|.+.-++-.++|+.+. +-.. T Consensus 235 ~igky~~-~a~~~ek~~L~~av~~i~~--d~--~~iiP~-~--~~ie~~ea~~-~~~~~f~~li~~~d~~Isk~i-LGqt 304 (526) T protein:vir:99 235 RLGKYPP-GTADEEKATLLRAVTGLGH--AA--AGIIPE-T--MAIDFQQAAQ-GSSEPFLAMMRQSEDAISKAV-LGGT 304 (526) T ss_pred EEEecCC-CCCHHHHHHHHHHHHHHhh--Cc--EEEecC-C--ceeEEeecCC-CCHHHHHHHHHHHHHHHHHHH-hhhh Confidence 8888764 4578888888888876532 11 233322 2 3455655442 233458888889999998864 1111 Q ss_pred Hccc-ccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec-----------ccccCCCC Q lcl|Aclame:pro 284 LMGG-KPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK-----------EYTLDNPE 340 (340) Q Consensus 284 ~lG~-~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~-----------~~~l~~~~ 340 (340) +... ..+++|+++..+.... -..+.+.--++.|++ ||+.|...++.++ .+.++..| T Consensus 305 lTs~~~~g~~gS~a~g~vh~~-v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e 373 (526) T protein:vir:99 305 LTSTTSQSGGGAFALGQVHNE-VRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLRE 373 (526) T ss_pred hccccccCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCC Confidence 1110 1112233332222222 222333344444443 5543322211111 12223222 No 118 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=98.75 E-value=4.9e-08 Score=60.66 Aligned_cols=318 Identities=11% Similarity=0.029 Sum_probs=173.7 Q ss_pred CCCCC---CCcccccccCCc--cc----eEEEECCCceeecCcchhhheeeeeecCchhhcccchHHh-hhhhhcchhhh Q lcl|Aclame:pro 1 MSKRK---PRKAVAMTASAP--QK----MEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGL-AKSLRSAVHHS 70 (340) Q Consensus 1 m~~~~---~~~~~~~~~~~~--~~----~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l-~~~~r~~~~~~ 70 (340) ||+=- .+|-.......+ .+ ...|. +.|..-++-..+..-+..+.+|+... ...| ..+...++|.. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~gltp~~l~~iL~~a~~gd~~~----~~~L~~dm~~~D~hi~ 75 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQ-EHPSSGVTPNRAAQMLRDAERGDLTA----QADLAFDMEEKDTHLF 75 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhc-cccccCCCHHHHHHHHHHhhCCCHHH----HHHHHHHHHhhChHHH Confidence 66531 111111111111 10 01121 23444444444333344444443321 1122 23445678888 Q ss_pred hhhhhhhhhHHHh---hhccCCCcH----------------HHHHHHHH---HHHHhCCeeEEEEec---CCceeEEEEE Q lcl|Aclame:pro 71 SPIYVKRNVLAST---YIPHPLLSR----------------QDFSRFAL---DYLVFGNAFLEQRHS---VTGQLIKLLT 125 (340) Q Consensus 71 ~~i~~k~n~~~~~---~~pnp~~~~----------------~~~~~~~~---~~ll~Gnay~~i~r~---~~G~~~~L~p 125 (340) +++..+..-.... +.|....+. .+|..++. +...+|-+.++++.. +...+..+.+ T Consensus 76 s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~lldA~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (512) T protein:vir:19 76 SELSKRRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAGDAILKGYSMQEIEWGWLGKMRVPVALHH 155 (512) T ss_pred HHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhcceeeeeEeeeeCCceeeeeeee Confidence 8887666555542 333222110 12444444 455799999999774 3445778999 Q ss_pred ecCcceeecccCceEEEEeCC-ceEEEEcccc-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 126 SPAKYTRRGVDDSVFWFVENF-TQPHEFAPDT-VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAG 203 (340) Q Consensus 126 l~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~d-vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~ 203 (340) .|+.+.+...+......++.+ .....+++.. |+|.... ..+..||.+.+..+......-..+.++...|.+.-+.|- T Consensus 156 r~~~~f~~~~~~~~~lr~~~~~~~G~~l~~~k~i~~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~ 234 (512) T protein:vir:19 156 RDPALFCANPDNLNELRLRDASYHGLELQPFGWFMHRAKS-RTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPM 234 (512) T ss_pred eccccceeccCCCcEEEecCCCCCceeecCCceEEEeccC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe Confidence 999888776665544333332 3345566665 4455433 456779999999999999999999999999999988998 Q ss_pred eEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHH Q lcl|Aclame:pro 204 YIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQ 283 (340) Q Consensus 204 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~ 283 (340) -|-+++. ..++++++.+.+.+.+..+ ++ .+++ |.+ ..++++..+ ....+-|.+.-++-.++|+.+. T Consensus 235 ~igky~~-~a~~~ek~~L~~al~~~~~--~a--~~ii-P~~--~~ie~~ea~-~~~~~~y~~li~~~d~~Isk~i----- 300 (512) T protein:vir:19 235 RVGKYPT-GSTNREKATLMQAVMDIGR--RA--GGII-PMG--MTLDFQSAA-DGQSDPFMAMIGWAEKAISKAI----- 300 (512) T ss_pred eEEecCC-CCCHHHHHHHHHHHHHHhh--Cc--EEEe-cCC--ceEEEeecC-CCCHHHHHHHHHHHHHHHHHHH----- Confidence 8877654 4678888888888877532 21 2232 222 244555443 2334558888899999999862 Q ss_pred Hcccccc----cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec-----------ccccCCCC Q lcl|Aclame:pro 284 LMGGKPE----NIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK-----------EYTLDNPE 340 (340) Q Consensus 284 ~lG~~~~----~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~-----------~~~l~~~~ 340 (340) +|..-+ ++|+++. .+....-..+.+.-.++.|++ ||+.|...++.++ .+.++..| T Consensus 301 -LGqtlTs~~g~~Gs~a~-~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~e 371 (512) T protein:vir:19 301 -LGGTLTTEAGDKGARSL-GEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTSE 371 (512) T ss_pred -hhhhhcccccccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCC Confidence 333211 1222332 222333344555566666664 6665533332222 12233333 No 119 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=98.74 E-value=6.9e-08 Score=59.84 Aligned_cols=323 Identities=10% Similarity=0.062 Sum_probs=174.1 Q ss_pred CCCCC---CCccccccc--CCccce----EEEECCCceeecCcchhhheeeeeecCchhhcccchHHhh-hhhhcchhhh Q lcl|Aclame:pro 1 MSKRK---PRKAVAMTA--SAPQKM----EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLA-KSLRSAVHHS 70 (340) Q Consensus 1 m~~~~---~~~~~~~~~--~~~~~~----~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~-~~~r~~~~~~ 70 (340) |++=- .+|-....- .++.++ ..|+ +.|..-++-..+..-+.....|+... ...|. .+.+.++|.. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~gltp~~l~~il~~a~~gd~~~----~~~L~edm~e~D~~i~ 75 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFA-QHPAKGLTPAKLARILVEAEQGNLQA----QAELFMDMEERDAHLF 75 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcc-cCCCCCcCHHHHHHHHHHhhCCCHHH----HHHHHHHHHhhChHHH Confidence 55421 111110000 011111 1111 23444444333334444444444321 22333 3344688888 Q ss_pred hhhhhhhhhHHHh---hhccCCCcH----------------HHHHHHH---HHHHHhCCeeEEEEecCCc---eeEEEEE Q lcl|Aclame:pro 71 SPIYVKRNVLAST---YIPHPLLSR----------------QDFSRFA---LDYLVFGNAFLEQRHSVTG---QLIKLLT 125 (340) Q Consensus 71 ~~i~~k~n~~~~~---~~pnp~~~~----------------~~~~~~~---~~~ll~Gnay~~i~r~~~G---~~~~L~p 125 (340) +++..+....... +.|+...+. ..|..++ ++...+|-+..+++....| .+..|.+ T Consensus 76 s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~ldA~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) T protein:vir:79 76 AEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HHHHHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHHhhhhhcceeEEEEEeecCCceeEEEeee Confidence 8887766655542 333221111 1244444 3455799999999876543 4678899 Q ss_pred ecCcceeecccCceEEEEeCC-ceEEEEcccc-EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCc Q lcl|Aclame:pro 126 SPAKYTRRGVDDSVFWFVENF-TQPHEFAPDT-VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAG 203 (340) Q Consensus 126 l~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~d-vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~ 203 (340) .++.+.+...+.+....++.+ .....+++.. |+|. +.......||.+.+..+......-..+.++...|.+.-+.|- T Consensus 156 r~~~~F~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~-~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~ 234 (526) T protein:vir:79 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHR-PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) T ss_pred ecccceEeccCCCcEEEecCCCCCceeecCCceEEEe-ecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCce Confidence 999887776666655444443 4445667665 4555 444456779999999999999999999999999999989998 Q ss_pred eEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHH Q lcl|Aclame:pro 204 YIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQ 283 (340) Q Consensus 204 gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~ 283 (340) -|.+++. ..++++++.+.+.+.+..+ ++ .+++ |.+ ..++++..+. ..-+-|.+.-++-.++|+.+. +-.. T Consensus 235 ~igky~~-~a~~~ek~~L~~av~~i~~--da--~~ii-P~~--~~ie~~ea~~-~~~~~f~~li~~~d~~Isk~i-LGqt 304 (526) T protein:vir:79 235 RLGKYPP-GTADEEKATLLRAVTGLGH--AA--AGII-PET--MAIDFQQAAQ-GSSEPFLAMMRQSEDAISKAV-LGGT 304 (526) T ss_pred EEEecCC-CCCHHHHHHHHHHHHHHhc--Cc--EEEe-cCC--ceeEEeecCC-CCHHHHHHHHHHHHHHHHHHH-hhhh Confidence 8888764 4578888888888877532 11 2333 222 3455665442 333458888889999998864 1111 Q ss_pred Hccc-ccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec-----------ccccCCCC Q lcl|Aclame:pro 284 LMGG-KPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK-----------EYTLDNPE 340 (340) Q Consensus 284 ~lG~-~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~-----------~~~l~~~~ 340 (340) +... ..+++|+++..+.... -..+.+.--+..|++ ||+.|...++.++ .+.++..| T Consensus 305 lTs~~~~g~~gS~a~g~vh~~-v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e 373 (526) T protein:vir:79 305 LTSTTSQSGGGAFALGQVHNE-VRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLRE 373 (526) T ss_pred hccccccCcchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCC Confidence 1110 1112233333222222 233444555555654 6654432222221 12222222 No 120 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=98.73 E-value=5.4e-08 Score=60.41 Aligned_cols=320 Identities=10% Similarity=0.060 Sum_probs=145.8 Q ss_pred CCCCC---------CCcccccccCCcc-----ceEE----------EECCCcee-----------------ecCcchhhh Q lcl|Aclame:pro 1 MSKRK---------PRKAVAMTASAPQ-----KMEA----------FTFGEPVP-----------------VLDKRDILD 39 (340) Q Consensus 1 m~~~~---------~~~~~~~~~~~~~-----~~~~----------~~f~~p~~-----------------~~~~~~~~~ 39 (340) |.++| .++....+.+-+. ++.+ -++-.|.. .-..++-.. T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~ 118 (862) T protein:vir:99 39 LARTRQNWPVQKEKPNPIIRSVKDFPFVEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSS 118 (862) T ss_pred HHhhcccCCcccccCCCCCCcccccccccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccc Confidence 44443 2221111111000 0000 00001100 000001011 Q ss_pred eeeeeecCchhhccc-chHHhhhhhhcchhhhhhhhhhhhhHHHhh-h-cc---C-C-C------cHH------HHH--- Q lcl|Aclame:pro 40 YVECISNGKWYEPPV-SFSGLAKSLRSAVHHSSPIYVKRNVLASTY-I-PH---P-L-L------SRQ------DFS--- 96 (340) Q Consensus 40 ~~~~~~~~~~~~~pv-~~~~l~~~~r~~~~~~~~i~~k~n~~~~~~-~-pn---p-~-~------~~~------~~~--- 96 (340) |........||.++. .-+.|..+++.+.--+.++..-+......- . .. + . . ... .+. T Consensus 119 y~~~~~~~~~~~~~~f~gyql~alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~rL~v~~~l~ 198 (862) T protein:vir:99 119 YAVPEALQDWYLSQGFIGHQACALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVEFKVKENLI 198 (862) T ss_pred cccchhccccccccCcccHHHHHHHHhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHHhhHHHHHH Confidence 110001123343332 123455566665544444444333332210 0 00 0 0 0 000 111 Q ss_pred HHHHHHHHhCCeeEEEEec-C---------------CceeEEEEEecCcceeec------cc--Cce-----EEEEeCCc Q lcl|Aclame:pro 97 RFALDYLVFGNAFLEQRHS-V---------------TGQLIKLLTSPAKYTRRG------VD--DSV-----FWFVENFT 147 (340) Q Consensus 97 ~~~~~~ll~Gnay~~i~r~-~---------------~G~~~~L~pl~~~~~~~~------~~--~~~-----~y~~~~~~ 147 (340) ..+...-++|.+++.+... . .|.+..|..+++.++... .+ ... +|.+. + T Consensus 199 eair~~RLyGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~--g 276 (862) T protein:vir:99 199 EFNRFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWIIS--G 276 (862) T ss_pred HHHHhcccccceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeeec--C Confidence 1122223678887765421 1 234567777777654321 11 112 34433 2 Q ss_pred eEEEEccccEEEecCCC------CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CcCHHHHHH Q lcl|Aclame:pro 148 QPHEFAPDTVFHLLEPD------INQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDP-AQSATDVES 220 (340) Q Consensus 148 ~~~~~~~~dvih~r~~~------~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~-~~~~e~~~~ 220 (340) ..+.+..|||+.... +...++|+|.++.+...|.....+.......+.+.... ++++... .+.. .+. T Consensus 277 --~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~--v~ktd~l~~l~~--ed~ 350 (862) T protein:vir:99 277 --QKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTT--AIHTDTAKAIAN--EDK 350 (862) T ss_pred --eeeccceeEEecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeechhHhhhcc--HHH Confidence 246678888886532 22345799999999999998888888888877765433 3333321 1211 233 Q ss_pred HHHHHHHh-cCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHH-cccccccccccccH Q lcl|Aclame:pro 221 LRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQL-MGGKPENIGSLGDV 298 (340) Q Consensus 221 l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~-lG~~~~~~~~~~n~ 298 (340) +.+.++.. .+-+|. +++++..+ + +|..++.+..+ +-++.....+.||++.+||... +|..+. |..++. T Consensus 351 l~~r~~~~~~~rdN~-Gi~liD~e---E--e~e~ls~slSG--L~dll~~~~q~IAaas~IP~tiLfGqspa--GlnATG 420 (862) T protein:vir:99 351 FIQRLMFWVRYRDNH-AVKVLGTD---E--TMEQFDTSLAD--FDAVIMGQYQLVASIAKTPATKLLGTAPK--GFNSTG 420 (862) T ss_pred HHHHHHHHHhccCcc-eeEEecCC---C--ceeEEecccCC--hHHHHHHHHHHHHhhhCCCceeecccCcc--cccCch Confidence 44444432 233443 45665432 2 35544433222 2344455667999999999985 454332 333455 Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHH-HHhhCcc--c-eeecccccCCCC Q lcl|Aclame:pro 299 EKVAKVFVR-------NELSPLQDRFREV-NDWLGME--V-IRFKEYTLDNPE 340 (340) Q Consensus 299 e~~~~~f~~-------~~l~P~~~~ie~l-n~~l~~~--~-~rf~~~~l~~~~ 340 (340) +...+.|+. ..|.|+++++..+ ...++.+ + +.|++ |..+. T Consensus 421 E~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~~~d~~ieFnp--L~~~s 471 (862) T protein:vir:99 421 EFETISYHEELESIQEHVYMPFLQRHYLISRLSLGIQHEIDVVMEP--VASMT 471 (862) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEeCC--CCCCC Confidence 666676764 5688888888763 3445432 1 44553 32222 No 121 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=98.68 E-value=1.1e-07 Score=58.63 Aligned_cols=313 Identities=15% Similarity=0.173 Sum_probs=160.8 Q ss_pred CCCCC----CCcccccc------cCCccceEEEECCCceeecCcch-hhheeeeeecCchhhcccchHHhhhhhhcchhh Q lcl|Aclame:pro 1 MSKRK----PRKAVAMT------ASAPQKMEAFTFGEPVPVLDKRD-ILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH 69 (340) Q Consensus 1 m~~~~----~~~~~~~~------~~~~~~~~~~~f~~p~~~~~~~~-~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~ 69 (340) |+..= .++...+. ..-+.....+++.-.-.+++..+ ++.-. +. ++.....+ ..++|. T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il~~~-----~~------~~~~y~~m-~~D~~i 68 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKAL-----GK------DIRVYREL-RADAHV 68 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHHhhc-----cC------CHHHHHHH-hhChHH Confidence 65541 11111000 00000111111100011111111 11100 00 11111233 357777 Q ss_pred hhhhhhhhhhHHHh---hhccCCCcH--H---------HHHHHH---HHHHHhCCeeEEEEecCCc---eeEEEEEecCc Q lcl|Aclame:pro 70 SSPIYVKRNVLAST---YIPHPLLSR--Q---------DFSRFA---LDYLVFGNAFLEQRHSVTG---QLIKLLTSPAK 129 (340) Q Consensus 70 ~~~i~~k~n~~~~~---~~pnp~~~~--~---------~~~~~~---~~~ll~Gnay~~i~r~~~G---~~~~L~pl~~~ 129 (340) .+++..+....... +.|+..... . .|..++ ++...+|.+.++++....| .+..|.+.|+. T Consensus 69 ~s~l~~Rk~av~~~~w~i~~~~~~~~~a~~i~e~l~~~~~~~~i~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~ 148 (491) T protein:vir:79 69 GGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIATEMLDAVLYGYQPMEITWGKVGNYIVPIDVVGKPAD 148 (491) T ss_pred HHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhhhcceeEEEEEeecCCeeeEEeeeeeccc Confidence 77776665544431 222221111 1 133343 4556799999999875543 45689999998 Q ss_pred ceeecccCceEEEEeCC-ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEe Q lcl|Aclame:pro 130 YTRRGVDDSVFWFVENF-TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYV 208 (340) Q Consensus 130 ~~~~~~~~~~~y~~~~~-~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~ 208 (340) +++...++...+....+ .....+++...|+.++.......||.+.+..+......-....++...|.+.-+.|--+.++ T Consensus 149 ~f~~d~~~~l~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky 228 (491) T protein:vir:79 149 WFVYDPENQLRFRSKEHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKH 228 (491) T ss_pred ceeeccCCceEEeecCCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEec Confidence 88877776666655543 34466777766655544445568999999999999999999999999999999999888887 Q ss_pred CCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccc-hhhHHHHHHHHHhhHHHHHHHhcCCHHHccc Q lcl|Aclame:pro 209 TDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE-VATKDDFFNIKKASAADLMDAHRVPFQLMGG 287 (340) Q Consensus 209 ~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~-~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~ 287 (340) +. ..++++++.+.+.+.+..+ ++ ..|+ |.+ ..++++..+. +..-..|.+.-++-.++|..+. +|. T Consensus 229 ~~-~a~~~ek~~l~~al~~~~~--~a--~~vi-P~~--~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i------LGq 294 (491) T protein:vir:79 229 PR-SASDAETNLLLDRLEDMVQ--DA--VAVI-PDD--SSIEIKEAAGKSGSADVYERLLHFCRGEVSIAL------LGQ 294 (491) T ss_pred CC-CCCHHHHHHHHHHHHHHhc--Ce--EEEe-cCC--ceeEEEeccCCCCChhHHHHHHHHHHHHHHHHH------hhh Confidence 54 4678888888888876532 11 2232 221 2455554442 2333447787888888888854 332 Q ss_pred cc--ccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 288 KP--ENIGSLGDVEKVA----------KVFVRNELSPLQDRFREVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 288 ~~--~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ie~ln~~l~~~~~rf~~~~l~~~~ 340 (340) .- .++++++..+... ..++..++.-++..+.++|-. +....+|.-...++.+ T Consensus 295 tlTt~~~gs~a~~~vh~~v~~~i~~~D~~~i~~tln~li~~l~~~N~~-~~~~p~f~~~e~ee~~ 358 (491) T protein:vir:79 295 NQTTEATSTRASAQAGLEVTDDIRDGDKAIVVEAMNMLIRWICDLNFD-GAARPVFDMWEQEQVD 358 (491) T ss_pred hhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcceEeecCcCchh Confidence 22 2234444332222 222233333222223333311 1222233222222221 No 122 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=98.66 E-value=1.3e-07 Score=58.29 Aligned_cols=308 Identities=13% Similarity=0.166 Sum_probs=157.8 Q ss_pred CCCC--------------CCCcccccccCCccceEEEECC-CceeecCcchhhheeeeeecCchhhcccchHHhhhhhhc Q lcl|Aclame:pro 1 MSKR--------------KPRKAVAMTASAPQKMEAFTFG-EPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRS 65 (340) Q Consensus 1 m~~~--------------~~~~~~~~~~~~~~~~~~~~f~-~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~ 65 (340) |+.. ++.-...... .......+++| .|.. ...++.-.+ + ++.....+ .. T Consensus 1 m~~~i~~~~g~p~~~~~~~~~~~~~ia~-~~~~~~~~~~~~~~~~---~~~iLr~~~----~-------~~~~y~~m-~~ 64 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPDKSLSSQIAT-RARSIDFFALGMYLPN---PDPVLKALG----K-------DIRVYREL-RA 64 (491) T ss_pred CCCceeCCCCCccCcccCChHHHHHHHh-hhcccccccccCCccc---hHHHHHhcC----C-------CHHHHHHH-hh Confidence 5543 1111111110 00011111221 1110 011121110 1 11111223 34 Q ss_pred chhhhhhhhhhhhhHHHh---hhccCCCcH-----------HHHHHH---HHHHHHhCCeeEEEEecCCc---eeEEEEE Q lcl|Aclame:pro 66 AVHHSSPIYVKRNVLAST---YIPHPLLSR-----------QDFSRF---ALDYLVFGNAFLEQRHSVTG---QLIKLLT 125 (340) Q Consensus 66 ~~~~~~~i~~k~n~~~~~---~~pnp~~~~-----------~~~~~~---~~~~ll~Gnay~~i~r~~~G---~~~~L~p 125 (340) ++|..+++..+....... +.|+..... ..|..+ +++...+|.+.+++++...| .+..+.+ T Consensus 65 D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l~~~~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~ 144 (491) T protein:vir:10 65 DAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVFADLDLSRIVTEMLDAVLYGYQPMEITWGKVGNYIVPIDVVG 144 (491) T ss_pred ChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHhhhhcceeEEEEEeecCCeeEEEEeee Confidence 677777776554444321 122111110 113333 34566899999999886543 4668999 Q ss_pred ecCcceeecccCceEEEEeCC-ceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 126 SPAKYTRRGVDDSVFWFVENF-TQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGY 204 (340) Q Consensus 126 l~~~~~~~~~~~~~~y~~~~~-~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~g 204 (340) .|+.+.+...++...+..+++ .....+++...|+.++.......||.+.+..+......-....++...|.+.-+.|-- T Consensus 145 r~~~~f~~d~~~~l~~~~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 224 (491) T protein:vir:10 145 KPADWFVYDPENQLRFRSKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPML 224 (491) T ss_pred ecccceeeccCCceEEecCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE Confidence 999888877777766665544 3445677776555554434456899999999999999999999999999999999888 Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhh-HHHHHHHHHhhHHHHHHHhcCCHH Q lcl|Aclame:pro 205 IMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVAT-KDDFFNIKKASAADLMDAHRVPFQ 283 (340) Q Consensus 205 il~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~-d~qf~e~~~~~~~~I~~~f~VPp~ 283 (340) +.+++. ..++++++.+.+.+.+..+ ++ ..++ |.+ ..++++..+.+.. -.-|.+.-++-.++|..+. T Consensus 225 igky~~-~a~~~ek~~l~~al~~~~~--~a--~~vi-P~~--~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~i----- 291 (491) T protein:vir:10 225 VGKHPR-SASDGEKNLLLDCLEDMVQ--DA--VAVV-PDD--SSIEIKEAAGKTGSADVYERLLHFCRGEVSIAL----- 291 (491) T ss_pred EEecCC-CCCHHHHHHHHHHHHHHhc--Cc--EEEe-cCC--ceeEEEecCCCCCChhHHHHHHHHHHHHHHHHH----- Confidence 888754 4678888888888877532 11 2232 221 3455554443332 3347777778888888763 Q ss_pred Hcccccc--cccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhh----------CccceeecccccCCCC Q lcl|Aclame:pro 284 LMGGKPE--NIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWL----------GMEVIRFKEYTLDNPE 340 (340) Q Consensus 284 ~lG~~~~--~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l----------~~~~~rf~~~~l~~~~ 340 (340) +|..-+ .+++++-.+.... -...-+.-.+..+++ +|. | +.+..+|.-...++.+ T Consensus 292 -LGqtlTt~~~gs~a~~~vh~~-v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~~e~~ 358 (491) T protein:vir:10 292 -LGQNQTTEATSTRASAQAGLE-VTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQEQVD 358 (491) T ss_pred -hhhhcccCcccchhHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCcCchh Confidence 333222 2333332222222 122223333333333 332 2 1222233211111111 No 123 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=98.52 E-value=3.9e-07 Score=55.75 Aligned_cols=312 Identities=13% Similarity=0.066 Sum_probs=159.6 Q ss_pred CCCCCCCcccccccCCccceEEE-ECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAF-TFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNV 79 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~-~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~ 79 (340) ++|+- ..+..++.. .....+ .|..+.. .++.+++.-.+ .+++ .....+. .++|..+++..+..- T Consensus 1 v~~~~--l~~e~at~~-~~~d~~~~~~~~l~-~~~~~il~~a~---~g~~-------~~y~~l~-~D~~i~s~l~~rk~a 65 (488) T protein:vir:99 1 MEKPA--LGREIATSG-DGRDITRPFISGLQ-VPNDSILQRRG---GNDL-------RVYEEIL-SDAQVKTVWGQRQLA 65 (488) T ss_pred CCccc--hhHHHHHHH-hhhhhhccccCCCC-CCChHHHHhhc---cCCH-------HHHHHHh-hChHHHHHHHHHHHH Confidence 33221 111111110 001111 1111110 11122221111 1110 1111222 355666666544433 Q ss_pred HHHh---hhccCCCc--------------HHHHHHH---HHHHHHhCCeeEEEEecCCc---eeEEEEEecCcceeeccc Q lcl|Aclame:pro 80 LAST---YIPHPLLS--------------RQDFSRF---ALDYLVFGNAFLEQRHSVTG---QLIKLLTSPAKYTRRGVD 136 (340) Q Consensus 80 ~~~~---~~pnp~~~--------------~~~~~~~---~~~~ll~Gnay~~i~r~~~G---~~~~L~pl~~~~~~~~~~ 136 (340) .... +.|+.... .-.|..+ +++.+.+|.+..+++....| .+..|.+.|+.+.....+ T Consensus 66 v~~~~w~i~p~~~~~~~~~~ae~v~~~l~~~~~~~~l~~~lda~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~~ 145 (488) T protein:vir:99 66 VVSREWKVEAGGDRPIDQAAAEHLEQQLQRVGWDRVTSKMLFGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYDQD 145 (488) T ss_pred HhcCCceEEcCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHhhhhhcceeEEEEEeecCCeeeEeeeeeecccceeecCC Confidence 3321 22221110 0013333 34566899999999885433 466889999988887666 Q ss_pred CceEEEEeCC-ceEEEEccc--cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCc Q lcl|Aclame:pro 137 DSVFWFVENF-TQPHEFAPD--TVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQ 213 (340) Q Consensus 137 ~~~~y~~~~~-~~~~~~~~~--dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~ 213 (340) ++..+....+ .....++.. =|+|..... .+..||.+.+..+......-....++...|.+.-+.|--|-+++.... T Consensus 146 ~~l~~~~~~~~~~g~~lp~~~~~i~~~~~~~-~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a 224 (488) T protein:vir:99 146 GGLRLLTPNNMFEGEPCPAPYFWHFSTGADN-DDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTA 224 (488) T ss_pred CceEEeccCCCCCccccccCceEEEEeecCC-CCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCC Confidence 6655554433 233445432 255554443 356799999999999999999999999999999999988877664456 Q ss_pred CHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccc Q lcl|Aclame:pro 214 SATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIG 293 (340) Q Consensus 214 ~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~ 293 (340) ++++++.+.+.+.+..+. . ..++.. + ..++++..+.. .-+-|.+.-++-.++|+.+.-= ..+.+ +.++| T Consensus 225 ~~~ek~~l~~av~~~~~~---~-~~viP~-~--~~ie~~ea~~~-~~~~~~~li~~~d~~Isk~iLG-qtlts--~~~~G 293 (488) T protein:vir:99 225 TPEDKAKLLAALHAIQTD---S-AIIMPA-G--MQAELLEAGRS-GTADYKTLHDTMDATIAKVGLG-QVAST--QGTPG 293 (488) T ss_pred CHHHHHHHHHHHHHHhcC---c-EEEecC-C--ceeEEeecCCC-ChHHHHHHHHHHHHHHHHHHhh-hhhcc--ccccc Confidence 788888888887765321 1 233322 2 24556554432 2345888888888999887311 12222 12223 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec---------ccccCCCC Q lcl|Aclame:pro 294 SLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK---------EYTLDNPE 340 (340) Q Consensus 294 ~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~---------~~~l~~~~ 340 (340) +++..+... .-..+.+.-.+..|++ ||+.|...++.++ .|+..+.| T Consensus 294 s~a~~~vh~-~v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~~e~e 349 (488) T protein:vir:99 294 RLGNDDLQA-DVRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVIEEPE 349 (488) T ss_pred chhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecCCCcc Confidence 444333333 2334555566666654 6655433322221 13333333 No 124 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=98.51 E-value=2.9e-08 Score=61.94 Aligned_cols=315 Identities=11% Similarity=0.022 Sum_probs=144.5 Q ss_pred CCC----CCCCccccc---ccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSK----RKPRKAVAM---TASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~----~~~~~~~~~---~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) .|= |+.+..+.- .+...++...+ .|.......++..... .-+.--..+.++|++-.+++ T Consensus 11 ~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~---~~~~~s~~~~~~~~~~-----------~lr~RaRdl~rNn~~a~~av 76 (502) T protein:vir:79 11 FSPGWKAARLRSRAVIQAYEAVKTTRTHKA---RRENRTADQLSQYGAV-----------SLREQARYLDNNHDLVIGVF 76 (502) T ss_pred cChHHHHHHHhhHHHHhhccccCcccccCC---CCCCCChHHHHHHHHH-----------HHHHHHHHHHhcChHHHHHH Confidence 221 111100000 00001111110 0110001111111100 00000012233444433333 Q ss_pred hhhhhhHHHh--hh----------------------------cc----CCCcHHHHHHH-HHHHHHhCCeeEEEEecC-- Q lcl|Aclame:pro 74 YVKRNVLAST--YI----------------------------PH----PLLSRQDFSRF-ALDYLVFGNAFLEQRHSV-- 116 (340) Q Consensus 74 ~~k~n~~~~~--~~----------------------------pn----p~~~~~~~~~~-~~~~ll~Gnay~~i~r~~-- 116 (340) .......... +. .| ..+++..++.+ +..++..|.+|+.+.+.. T Consensus 77 ~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~ 156 (502) T protein:vir:79 77 DKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRIN 156 (502) T ss_pred HHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccC Confidence 3222222211 11 11 12334444444 457889999999986643 Q ss_pred -----CceeEEEEEecCcceeecc--------------cCc-eEEEEeC-------CceEEEEccccEEEecCCCCCCCc Q lcl|Aclame:pro 117 -----TGQLIKLLTSPAKYTRRGV--------------DDS-VFWFVEN-------FTQPHEFAPDTVFHLLEPDINQEI 169 (340) Q Consensus 117 -----~G~~~~L~pl~~~~~~~~~--------------~~~-~~y~~~~-------~~~~~~~~~~dvih~r~~~~~~~~ 169 (340) .+.+..|..|+|..+.... .+. ..|.+.. ..+...+++++|||+..+.--... T Consensus 157 ~~~~g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~ 236 (502) T protein:vir:79 157 SLTPSAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQM 236 (502) T ss_pred ccCCCcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccc Confidence 3346788888887653211 111 1233321 133467899999999987656677 Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHH-HHhcCcccccccc-cccCCcccc Q lcl|Aclame:pro 170 YGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAM-RNSKGLGNFKNLF-FYSPNGKPD 247 (340) Q Consensus 170 ~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~-~~~~g~~n~~~~~-vl~~~~~~~ 247 (340) -|+|.+..++..+..-..-.+....--+=.+...++|+..++..... ...-..- +.....+ .|.++ .|. . T Consensus 237 RGis~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~--~~~~~~~~~~~~~l~-pG~i~~~L~-----p 308 (502) T protein:vir:79 237 RGTSLLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEP--DGNGSKENERELTIQ-PGIIYDDLK-----P 308 (502) T ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccc--ccCCCCCcccccccc-CCccccccC-----C Confidence 89999999888776666666655555555667777777543221100 0000000 0000001 12222 233 3 Q ss_pred ccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH----HH-HH- Q lcl|Aclame:pro 248 GIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF----RE-VN- 321 (340) Q Consensus 248 g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i----e~-ln- 321 (340) |.+++....+..-..|.+..+.....||+..|||-+.|-. +- +++||++......|.+.... ++..+ ++ +- T Consensus 309 Ge~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~-D~-s~nySs~R~~~~e~~r~~~~-~q~~~~~~~~~pi~~ 385 (502) T protein:vir:79 309 GEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTAR-NY-NGTYSAQRQELVESTDGYLI-LQDWFIGAVTRPMYR 385 (502) T ss_pred CceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhc-cc-cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Confidence 4556666655556678888999999999999999877632 22 35888887777666543322 22211 11 11 Q ss_pred HhhC----ccceeeccc----ccCCCC Q lcl|Aclame:pro 322 DWLG----MEVIRFKEY----TLDNPE 340 (340) Q Consensus 322 ~~l~----~~~~rf~~~----~l~~~~ 340 (340) .||- ...+..-.| ...+.+ T Consensus 386 ~~l~~a~l~G~i~~p~~~~~~~~~~~~ 412 (502) T protein:vir:79 386 AWLKQAVASGVIRLPRDLDRSSLYTAV 412 (502) T ss_pred HHHHHHHHcCCCCCCCCCCchhhccee Confidence 1221 111111111 111111 No 125 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.43 E-value=5.4e-08 Score=60.44 Aligned_cols=318 Identities=8% Similarity=0.024 Sum_probs=142.6 Q ss_pred CCCCCCCcccccccCCccceEEEE---------CCCceeecC--cchhhheeeeeecCchhhcccchHHhhhhhhcchhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFT---------FGEPVPVLD--KRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH 69 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~---------f~~p~~~~~--~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~ 69 (340) |..+..-...+ ..+...+.... +.+..|... ..++..... .-+.---.+.++|++- T Consensus 1 ~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~-----------~lr~RaRdl~rNn~~a 67 (530) T protein:vir:38 1 MKIPSLVGPDG--KTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYS-----------RGNARADDLVRNNGYA 67 (530) T ss_pred CccceeecCcc--ccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHH-----------HHHHHHHHHHhcChHH Confidence 55443211000 00000011111 111111000 001110000 0000001122333333 Q ss_pred hhhhhhhhhhHHH------------------------------hh-----hcc------CCCcHHHHHHH-HHHHHHhCC Q lcl|Aclame:pro 70 SSPIYVKRNVLAS------------------------------TY-----IPH------PLLSRQDFSRF-ALDYLVFGN 107 (340) Q Consensus 70 ~~~i~~k~n~~~~------------------------------~~-----~pn------p~~~~~~~~~~-~~~~ll~Gn 107 (340) .+++......... .+ .++ ..+++..++.+ +..++..|. T Consensus 68 ~~av~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE 147 (530) T protein:vir:38 68 ANAVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGE 147 (530) T ss_pred HHHHHHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCc Confidence 3332211111110 01 111 12344444444 467889999 Q ss_pred eeEEEEecCC-c--eeEEEEEecCcceeecc---c-------------Cc--eEEEEeC--Cc----------eEEEEcc Q lcl|Aclame:pro 108 AFLEQRHSVT-G--QLIKLLTSPAKYTRRGV---D-------------DS--VFWFVEN--FT----------QPHEFAP 154 (340) Q Consensus 108 ay~~i~r~~~-G--~~~~L~pl~~~~~~~~~---~-------------~~--~~y~~~~--~~----------~~~~~~~ 154 (340) +++.+.+... | .++.|..|+|..+.... + +. .||.... .+ ....+++ T Consensus 148 ~~~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a 227 (530) T protein:vir:38 148 LCVQATWDSDSTRLFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGR 227 (530) T ss_pred eEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccCh Confidence 9999886543 3 25678888876653211 1 11 1333221 11 1233556 Q ss_pred ccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCc----------CHHHHHHHHHH Q lcl|Aclame:pro 155 DTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQ----------SATDVESLRDA 224 (340) Q Consensus 155 ~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~----------~~e~~~~l~~~ 224 (340) .+|||+..+..-...-|+|.+..++..+.--..-++....--+=.+.-.++|+...+.. ..++...+... T Consensus 228 ~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (530) T protein:vir:38 228 PSFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGW 307 (530) T ss_pred hHeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCccccccccccc Confidence 79999998876678889999998887776665555555555555566666665332110 11111112211 Q ss_pred HHHhcCcc-------cccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc-ccccccccccc Q lcl|Aclame:pro 225 MRNSKGLG-------NFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSLG 296 (340) Q Consensus 225 ~~~~~g~~-------n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~~ 296 (340) .....+.. ..|.+..|.| |-+++.++-...-..|.+..+.....||+.+|||-+.| |. ....||| T Consensus 308 ~~~~~~~~~~~~~~l~pG~i~~L~p-----Ge~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D--~s~~nYS 380 (530) T protein:vir:38 308 LGEMAAYYSAAPVRLGGARVPHLLP-----GDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRN--YSQMSYS 380 (530) T ss_pred chhhhhcccccceeccCceeeecCC-----CCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc--cccccHH Confidence 11111111 1234444443 44566665555567788888999999999999998877 43 2346788 Q ss_pred cHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCccceeec-----cc-----ccCCCC Q lcl|Aclame:pro 297 DVEKVAKVFVRN-----------ELSPLQDRFREVNDWLGMEVIRFK-----EY-----TLDNPE 340 (340) Q Consensus 297 n~e~~~~~f~~~-----------~l~P~~~~ie~ln~~l~~~~~rf~-----~~-----~l~~~~ 340 (340) ++.+....|.+. -++|+..++.+ ..+....+... +| .+.+.+ T Consensus 381 S~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~--~av~~G~i~~p~~~~~~~~~~~~a~~~~~ 443 (530) T protein:vir:38 381 TARASANESWAYFMGRRKFVASRQACQMFLCWLE--EAIVRRVVTLPSKARFSFQEARTAWGNAN 443 (530) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHcCCccCCCCCCCCchhhHHhhhcee Confidence 777666655543 22333222111 11111111110 11 111121 No 126 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=98.38 E-value=2.6e-07 Score=56.71 Aligned_cols=324 Identities=9% Similarity=0.047 Sum_probs=155.1 Q ss_pred CCCCC-CCcccccccCCcc--ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRK-PRKAVAMTASAPQ--KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~-~~~~~~~~~~~~~--~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |--+. +.|+-......+. ...+..+-+|-+++..+ .++.++. +.+ -.++.+.++|..+++..+. T Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~D~~lr~~----------gg~~~~~-~~l--~~~m~e~D~~v~s~l~~Rk 69 (446) T protein:vir:98 3 MEVRNAPTPAIRRRTIYAMEHLGLATSYLSEDGGYKRA----------GKPTYQQ-LSA--WDEAAQTEPIIAQGLDSIA 69 (446) T ss_pred ccccCCCchhhhhhhhhccccchhhcccCCcchHhhhc----------CCChHHH-HHH--HHHHHhcchHHHHHHHHHH Confidence 43332 2221111111111 11111222344433221 1121111 111 1244455666666665544 Q ss_pred hhHHHh---hhccC------------CCcHHHHHHHHHHHHHhCCeeEEEEecCC-c--ee-------EEEEEecCccee Q lcl|Aclame:pro 78 NVLAST---YIPHP------------LLSRQDFSRFALDYLVFGNAFLEQRHSVT-G--QL-------IKLLTSPAKYTR 132 (340) Q Consensus 78 n~~~~~---~~pnp------------~~~~~~~~~~~~~~ll~Gnay~~i~r~~~-G--~~-------~~L~pl~~~~~~ 132 (340) .-+... +.|-. ....++....+++.+.+|.++.|++.... | .+ +.+.|++... . T Consensus 70 ~av~~~~w~V~p~~~~~a~~v~~~l~~~~~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~-~ 148 (446) T protein:vir:98 70 LSVLNKVGPYQHGDKRIKKFIDDQLRNRAKTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVML-I 148 (446) T ss_pred HHhhcCCceecCccHHHHHHHHHHHhhcCchhHHHHHHHHHhhCceeeeEEEeecccccccchhhcccccccccccee-e Confidence 333221 11110 01123344456788899999999987532 2 11 2233433321 1 Q ss_pred ecccCce----------E-----------------EEEeCCceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHH Q lcl|Aclame:pro 133 RGVDDSV----------F-----------------WFVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLN 185 (340) Q Consensus 133 ~~~~~~~----------~-----------------y~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~ 185 (340) ...++.. + ......+..+.++....+++++....+..||.|.+..+.-..... T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK 228 (446) T protein:vir:98 149 ANDNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFK 228 (446) T ss_pred eccCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHHHH Confidence 1111000 0 000112334557777877777655566789999999999999999 Q ss_pred HHHHHHHHHHHHccCCCceEEEeCCCCcCH-----H---HHHHHHH-HHHHhcCcccccccccccCCccccccceeeccc Q lcl|Aclame:pro 186 ESATLFRRKYYQNGAHAGYIMYVTDPAQSA-----T---DVESLRD-AMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) Q Consensus 186 ~aa~~~~~~~f~NG~~p~gil~~~~~~~~~-----e---~~~~l~~-~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~ 256 (340) ..+.++...|.+.-+.|--+.+++.+..++ + ..+.+.+ .+++....+..+. .++.....+.|+++.=++. T Consensus 229 ~~~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~-~ii~~~~~P~g~eie~~ea 307 (446) T protein:vir:98 229 RAFRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSG-LVLTQLSKEQPVQVGALTT 307 (446) T ss_pred HhhHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccce-eeeecccCCCCceEEeecc Confidence 999999999999999998888876432211 1 1112222 2333332222222 2221112234555554443 Q ss_pred hhh-HHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeec-- Q lcl|Aclame:pro 257 VAT-KDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFK-- 332 (340) Q Consensus 257 ~~~-d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~-- 332 (340) ... -..|.+.-++-.++|+.+.-..---+|-..+.+|+++-.+..... ..+-+.--++.|++ ||+.|...++.++ T Consensus 308 ~~~~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V-~~d~~~aDa~~i~~tln~~Li~~l~~lNf~ 386 (446) T protein:vir:98 308 GNNFSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLEL-FDGKINSIFDTVIHAFTEQVIGNLIRLNFD 386 (446) T ss_pred ccCChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC Confidence 222 234888888899999998766644444433333444322333333 33445666666664 6766544433322 Q ss_pred -------------ccccCCCC Q lcl|Aclame:pro 333 -------------EYTLDNPE 340 (340) Q Consensus 333 -------------~~~l~~~~ 340 (340) .+++.+.| T Consensus 387 ~~~~~~~~~~~~~~~~~~e~e 407 (446) T protein:vir:98 387 PALYPLASNTGYITRLPGRAT 407 (446) T ss_pred ccccccccccccceeccCChh Confidence 12222222 No 127 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.32 E-value=3.1e-07 Score=56.24 Aligned_cols=318 Identities=10% Similarity=0.025 Sum_probs=142.0 Q ss_pred CCCCCCC--------------ccccc-ccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhc Q lcl|Aclame:pro 1 MSKRKPR--------------KAVAM-TASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRS 65 (340) Q Consensus 1 m~~~~~~--------------~~~~~-~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~ 65 (340) |.-.--. .+... .++....+..|. |...-...++...... -+.--..+.++ T Consensus 1 ~~~p~~~~~~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~---p~~~s~~~~~~~~~~~-----------lr~RaRdl~rN 66 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTSLREYAGYHGGGSGFGGQLRSWN---PPSESVDAALLPNFTR-----------GNARADDLVRN 66 (533) T ss_pred CCCchhhhhhcccccchHHHHHhhhhccCCCCCcccccc---cCCCCHHHHHHHHHHH-----------HHHHHHHHHhc Confidence 3322100 00000 000011111111 1000001111111000 00000112233 Q ss_pred chhhhhhhhhhhhhHHH-hh----------------------------------hcc------CCCcHHHHHHH-HHHHH Q lcl|Aclame:pro 66 AVHHSSPIYVKRNVLAS-TY----------------------------------IPH------PLLSRQDFSRF-ALDYL 103 (340) Q Consensus 66 ~~~~~~~i~~k~n~~~~-~~----------------------------------~pn------p~~~~~~~~~~-~~~~l 103 (340) |++-.+++......... .+ .++ ...++..++.+ +..++ T Consensus 67 n~~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~ 146 (533) T protein:vir:34 67 NGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHA 146 (533) T ss_pred ChHHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHH Confidence 33333333221111111 01 111 12233344444 56788 Q ss_pred HhCCeeEEEEecCC-c--eeEEEEEecCcceeecc---cC-------------c--eEEEEeC--Cc----------eEE Q lcl|Aclame:pro 104 VFGNAFLEQRHSVT-G--QLIKLLTSPAKYTRRGV---DD-------------S--VFWFVEN--FT----------QPH 150 (340) Q Consensus 104 l~Gnay~~i~r~~~-G--~~~~L~pl~~~~~~~~~---~~-------------~--~~y~~~~--~~----------~~~ 150 (340) ..|.+|+.+.+... | .++.|..|+|..+.... ++ . .||.... .+ ... T Consensus 147 ~dGE~f~~~~~~~~~g~~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~ 226 (533) T protein:vir:34 147 FNGELFVQATWDTSSSRLFRTQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPREL 226 (533) T ss_pred hCCceEEEeeeccCCCCccceEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeee Confidence 99999998876543 2 35678888876653211 11 1 1332221 11 122 Q ss_pred EEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCc----------CHHHHHH Q lcl|Aclame:pro 151 EFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQ----------SATDVES 220 (340) Q Consensus 151 ~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~----------~~e~~~~ 220 (340) .+++.+|||+..+..-+..-|+|.+..++..+.-...-.+....--+=.+.-.++|+...+.. .++..+. T Consensus 227 ~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~ 306 (533) T protein:vir:34 227 PGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRER 306 (533) T ss_pred ccChhHeeeeccccCCCcccCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCccccccc Confidence 355779999998876677889999998887776665555555555555666677776432211 1111111 Q ss_pred HHHHHHH---hcCc----ccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccc Q lcl|Aclame:pro 221 LRDAMRN---SKGL----GNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIG 293 (340) Q Consensus 221 l~~~~~~---~~g~----~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~ 293 (340) +...... ..++ =..|.+..|.| |.+++.++.+.....|.+..+.....||+.+|||-+.|-. +-... T Consensus 307 ~~~~~~~~~~~~~~~~~~l~pG~i~~L~p-----Ge~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~-D~s~~ 380 (533) T protein:vir:34 307 LTGWIGEIAAYYAAAPVRLGGAKVPHLMP-----GDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSR-NYAQM 380 (533) T ss_pred ccccchhhhhccCcceeeccCceeeecCC-----CCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhh-hcccc Confidence 2211111 1110 02244555544 4456666555556778888899999999999999887632 22346 Q ss_pred ccccHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhCccceeec-----ccccC-----CCC Q lcl|Aclame:pro 294 SLGDVEKVAKVFVRN-----------ELSPLQDRFREVNDWLGMEVIRFK-----EYTLD-----NPE 340 (340) Q Consensus 294 ~~~n~e~~~~~f~~~-----------~l~P~~~~ie~ln~~l~~~~~rf~-----~~~l~-----~~~ 340 (340) |||++.+....|.+. -++|+-..+.+ ..+....+... +|... +.+ T Consensus 381 nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~--~ail~G~i~~p~~~~~~~~~~~~~~~~~~ 446 (533) T protein:vir:34 381 SYSTARASANESWAYFMGRRKFVASRQASQMFLCWLE--EAIVRRVVTLPSKARFSFQEARSAWGNCD 446 (533) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCcccCCCccCCCchhhHHhhhcee Confidence 888876655555433 23333332211 11111112211 12111 111 No 128 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=98.31 E-value=2.5e-07 Score=56.75 Aligned_cols=319 Identities=8% Similarity=-0.025 Sum_probs=150.8 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcch-hhheeeee---ecCchhhcccc----------hHHh----hhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRD-ILDYVECI---SNGKWYEPPVS----------FSGL----AKS 62 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~-~~~~~~~~---~~~~~~~~pv~----------~~~l----~~~ 62 (340) |-+-.+++.......++.. |......+. .-.|-... .+..|...|-. +..| ..+ T Consensus 1 ~~r~~~~~~~~dr~i~~~~--------~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL 72 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAW--------YRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQ 72 (505) T ss_pred CCCCccccchhhcccchhh--------hhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHH Confidence 6555544432222211100 000000000 00000000 00111111100 0001 122 Q ss_pred hhcchhhhhhhhhhhhhHHH--hh------------------------------hcc----CCCcHHHHHHH-HHHHHHh Q lcl|Aclame:pro 63 LRSAVHHSSPIYVKRNVLAS--TY------------------------------IPH----PLLSRQDFSRF-ALDYLVF 105 (340) Q Consensus 63 ~r~~~~~~~~i~~k~n~~~~--~~------------------------------~pn----p~~~~~~~~~~-~~~~ll~ 105 (340) .++|++-.+++....+.... .+ .+| ..+++..++.+ +..++.. T Consensus 73 ~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~d 152 (505) T protein:vir:96 73 SINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARD 152 (505) T ss_pred HhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhC Confidence 34444444444333222221 11 112 12233444444 4678899 Q ss_pred CCeeEEEEecCCc-eeEEEEEecCcceeecc-----c-------------Cc-eEEEEeC----C---------ceEEEE Q lcl|Aclame:pro 106 GNAFLEQRHSVTG-QLIKLLTSPAKYTRRGV-----D-------------DS-VFWFVEN----F---------TQPHEF 152 (340) Q Consensus 106 Gnay~~i~r~~~G-~~~~L~pl~~~~~~~~~-----~-------------~~-~~y~~~~----~---------~~~~~~ 152 (340) |.+|+.+.+...+ .+..|..|+|..+.... + +. ..|.+.. + .....+ T Consensus 153 GE~f~~~~~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rv 232 (505) T protein:vir:96 153 GEVLVREHRGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERV 232 (505) T ss_pred CceEEEEeecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCcccccccccccccccc Confidence 9999988764333 35678888876653221 1 11 1243421 0 123447 Q ss_pred ccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 153 APDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLG 232 (340) Q Consensus 153 ~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~ 232 (340) ++.+|||+..+.--...-|+|.+..++..+.--..-++....--+=.+...++|+...+...+...+.-...... = T Consensus 233 pa~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~----l 308 (505) T protein:vir:96 233 PADEIIHTFVPWRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDDQGEIVEE----V 308 (505) T ss_pred CHhHhhhhhcccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccccCccccc----c Confidence 888999998877667888999999888777666555555555555566667777654332222111110000000 1 Q ss_pred cccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc-ccccccccccccHHHHHHHHHHH--- Q lcl|Aclame:pro 233 NFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSLGDVEKVAKVFVRN--- 308 (340) Q Consensus 233 n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~~n~e~~~~~f~~~--- 308 (340) ..|.+..|.| |-+++.+..+..-..|.+..+.....||+..|||-+.| |. -...+||.+.+....|.+. T Consensus 309 ~pG~i~~L~p-----Ge~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D--~s~~nYSS~R~~~~e~~r~~~~ 381 (505) T protein:vir:96 309 EAGTYQLLPY-----GIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHD--LEGVNFSSLRSGELDERDLYKL 381 (505) T ss_pred CCceeeecCC-----CCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc--cccccHHHHHHHHHHHHHHHHH Confidence 1234555544 44566666555567899999999999999999998866 43 2346788877766655533 Q ss_pred --------HHHHHHHHHHHHHHhhCccceeecccc---cCCCC Q lcl|Aclame:pro 309 --------ELSPLQDRFREVNDWLGMEVIRFKEYT---LDNPE 340 (340) Q Consensus 309 --------~l~P~~~~ie~ln~~l~~~~~rf~~~~---l~~~~ 340 (340) -++|+-..+. -..+....+....++ +.+.+ T Consensus 382 ~q~~~~~~~~~pi~~~~l--~~a~l~G~i~~p~~~~~~~~~~~ 422 (505) T protein:vir:96 382 LQFFVVTELLERVAGNLI--SMSLLTQALPLNMVDIDRLSQYA 422 (505) T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHcCCcCCCCccchhhceee Confidence 3333333221 111111112211121 11222 No 129 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=98.25 E-value=9.8e-07 Score=53.54 Aligned_cols=223 Identities=10% Similarity=0.020 Sum_probs=114.9 Q ss_pred eEEEEecCCc---eeEEEEEecCccee---ecccCceE--EEEe-CCceEEEEccccEEEecCCCCCCCcccccchhhhH Q lcl|Aclame:pro 109 FLEQRHSVTG---QLIKLLTSPAKYTR---RGVDDSVF--WFVE-NFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSAL 179 (340) Q Consensus 109 y~~i~r~~~G---~~~~L~pl~~~~~~---~~~~~~~~--y~~~-~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~ 179 (340) +.|++....| .+..|.+.|+.++. ...+++.. .+.. .+...+.+++...|+.++....+..||.+.+..+. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 7788776543 36678888886443 33333322 2222 23344667777766554443455689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeC-CCCc-----------CHHHHHHHHHHHHHhcCcccccccccccCCcccc Q lcl|Aclame:pro 180 NSAWLNESATLFRRKYYQNGAHAGYIMYVT-DPAQ-----------SATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPD 247 (340) Q Consensus 180 ~~i~~~~aa~~~~~~~f~NG~~p~gil~~~-~~~~-----------~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~ 247 (340) .....-....++...|.+.-+.|--+.+.+ +... +++.++.+....+....+.+++ +++ +. T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~--~ii-----p~ 153 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAG--GYI-----PH 153 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCccee--Eee-----cC Confidence 999999999999999998753333333322 1111 1223334444444443333332 222 24 Q ss_pred ccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCc Q lcl|Aclame:pro 248 GIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGM 326 (340) Q Consensus 248 g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~ 326 (340) |+++.-++......+|.+.-++-.++|+.+.--. .+......++|+++-.+. ...-..+.+.-.+..|++ ||+.|.. T Consensus 154 g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGq-tlTs~~~~~gGS~Alg~v-h~~v~~~~~~aD~~~i~~~ln~~li~ 231 (355) T protein:vir:78 154 GANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAH-FLTLGGDKSTGSYALGDT-FASFFTGSLNAVMKHIADVTQQHVVE 231 (355) T ss_pred CceEEEeecCCCcccHHHHHHHHHHHHHHHHhhh-hhccccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 4555555555555668888888889998876433 222111112233332222 223333444444555543 5544322 Q ss_pred cceeec--------ccccCCCC Q lcl|Aclame:pro 327 EVIRFK--------EYTLDNPE 340 (340) Q Consensus 327 ~~~rf~--------~~~l~~~~ 340 (340) .++.++ .+.++..+ T Consensus 232 ~l~~lN~~~~~~~P~~~~~~~~ 253 (355) T protein:vir:78 232 DLVDQNWGPEEPAPRLVPAQLG 253 (355) T ss_pred HHHHhcCCCCCCCCEEEecCcC Confidence 211111 11222222 No 130 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=98.25 E-value=2.1e-06 Score=51.77 Aligned_cols=322 Identities=11% Similarity=0.084 Sum_probs=142.2 Q ss_pred CCCCC-CCcccccccCCccceEEEECCCceeec--Ccc---------hhhh-eeeeeec----Cchhhcccc-hHHhhhh Q lcl|Aclame:pro 1 MSKRK-PRKAVAMTASAPQKMEAFTFGEPVPVL--DKR---------DILD-YVECISN----GKWYEPPVS-FSGLAKS 62 (340) Q Consensus 1 m~~~~-~~~~~~~~~~~~~~~~~~~f~~p~~~~--~~~---------~~~~-~~~~~~~----~~~~~~pv~-~~~l~~~ 62 (340) |-+.- .+....+...++..-.+.-|.-|...+ +.. ..+. .+....+ ..||.+..- -+.|..+ T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~al 116 (765) T protein:vir:96 37 MIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQACAI 116 (765) T ss_pred chhHHHHhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhHHHhhhcccCCccHHHHHH Confidence 11110 000000000011111122333222100 000 0000 0000000 122322211 1345566 Q ss_pred hhcchhhhhhhhhhhhhHHHh-hh--ccCC-Cc----------------HHHHHHHHHHHHHhCCeeEEEEec------- Q lcl|Aclame:pro 63 LRSAVHHSSPIYVKRNVLAST-YI--PHPL-LS----------------RQDFSRFALDYLVFGNAFLEQRHS------- 115 (340) Q Consensus 63 ~r~~~~~~~~i~~k~n~~~~~-~~--pnp~-~~----------------~~~~~~~~~~~ll~Gnay~~i~r~------- 115 (340) ++.+..-+.++..-+.+.... +. .... .. +.-+...+...-++|.+|+.+.-. T Consensus 117 Y~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~l 196 (765) T protein:vir:96 117 ISQHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDYY 196 (765) T ss_pred HHhCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhhHHHHHHHHHHHhhhceeeEEEEEecccCcchh Confidence 666555444444333333221 10 0000 00 011112222345889999876542 Q ss_pred ---------CCceeEEEEEecCcceeecc--------cCceE-----EEEeCCceEEEEccccEEEecCCCC------CC Q lcl|Aclame:pro 116 ---------VTGQLIKLLTSPAKYTRRGV--------DDSVF-----WFVENFTQPHEFAPDTVFHLLEPDI------NQ 167 (340) Q Consensus 116 ---------~~G~~~~L~pl~~~~~~~~~--------~~~~~-----y~~~~~~~~~~~~~~dvih~r~~~~------~~ 167 (340) ..|.+..|..+++..+.... ....| |.+. + ..+.+..|||+..... .. T Consensus 197 ~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~--g--~~IH~SRli~~~g~~lpd~lk~~~ 272 (765) T protein:vir:96 197 EKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIIS--G--KKYHRSHLVVVRGPQPPDILKPTY 272 (765) T ss_pred hccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeeec--C--ceeccceEEEecCCCchhhhcccc Confidence 11344566666665443311 11223 3333 2 2467788999865432 23 Q ss_pred CcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CcCHHHHHHHHHHHHHhc-CcccccccccccCCcc Q lcl|Aclame:pro 168 EIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDP-AQSATDVESLRDAMRNSK-GLGNFKNLFFYSPNGK 245 (340) Q Consensus 168 ~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~-~~~~e~~~~l~~~~~~~~-g~~n~~~~~vl~~~~~ 245 (340) +++|+|.++.+...|.....+.......+...... ++.+... .+. ..+.+.+.++... .-+| .+++++..+ T Consensus 273 ~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~--v~k~~~~~~l~--~~~~l~~r~~~~~~~r~n-~g~~~id~e-- 345 (765) T protein:vir:96 273 IFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTS--TIHVDVEKAIA--NEDAFNARLAFWIANRDN-HGVKVIGID-- 345 (765) T ss_pred CccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeeechHhhhc--cHHHHHHHHHHHHHhcCC-ceeEEecCC-- Confidence 56799999999999988877777766666654433 3443321 111 1234444444332 2234 345665432 Q ss_pred ccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc-ccccccccccccHHHHHHHHHH-------HHHHHHHHHH Q lcl|Aclame:pro 246 PDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSLGDVEKVAKVFVR-------NELSPLQDRF 317 (340) Q Consensus 246 ~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~~n~e~~~~~f~~-------~~l~P~~~~i 317 (340) + +|..++.+..+ +-++.....++||++-+||-..| |..+. |..++-+...+.|+. ..|.|.++++ T Consensus 346 -e--~~e~~s~~lsg--l~d~l~~~~~~iAaas~IP~t~LfGqsp~--GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L 418 (765) T protein:vir:96 346 -E--TMEQFDTNLSD--FDSVIMNQYQLVAAIAKTPATKLLGTSPK--GFNATGEHETISYHEELESIQEHIFDPLLERH 418 (765) T ss_pred -c--ceeEEecccCC--HHHHHHHHHHHHHhhhCCCeeeeccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 35544443332 34455667889999999999665 43322 222444666667775 5566666665 Q ss_pred HHHHHhhC---ccc-eeecccc-cCCCC Q lcl|Aclame:pro 318 REVNDWLG---MEV-IRFKEYT-LDNPE 340 (340) Q Consensus 318 e~ln~~l~---~~~-~rf~~~~-l~~~~ 340 (340) -++.-+-+ +++ +.|++-. +++.| T Consensus 419 ~~li~~s~~i~~d~~i~FnpL~~~sekE 446 (765) T protein:vir:96 419 YLLLAKSESIDVQLEIVWNPVDSTTSQQ 446 (765) T ss_pred HHHHHHhcCCCCcceEEeCCCCCCCHHH Confidence 54322211 121 4566422 22222 No 131 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=98.22 E-value=4.1e-07 Score=55.58 Aligned_cols=313 Identities=12% Similarity=0.045 Sum_probs=142.1 Q ss_pred CCCCC---------CCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhh Q lcl|Aclame:pro 1 MSKRK---------PRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSS 71 (340) Q Consensus 1 m~~~~---------~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~ 71 (340) .|=++ ...+..... ..+... .+ |.+.....++....... +.--..+.++|++-.+ T Consensus 11 ~sP~~a~~R~~ar~~~~~y~aa~--~~r~~~-~~--~~~~s~~~~i~~~~~~l-----------r~RaRdL~rNn~~a~~ 74 (548) T protein:vir:95 11 LAPELVARRLAAREAIQAYEAAR--PGRTHK-AK--RQPLGADTSLQKSAVSM-----------REQCRKLDEDHDLVTG 74 (548) T ss_pred cchHHHHHHHHhHHHhccccccC--cccccc-cc--CCCCChHHHHHHHHHHH-----------HHHHHHHHhcChHHHH Confidence 11111 000110000 000000 00 11111111111110000 0000122333443333 Q ss_pred hhhhhhhhHHH----hhhc--------------------------c----CCCcHHHHHHH-HHHHHHhCCeeEEEEecC Q lcl|Aclame:pro 72 PIYVKRNVLAS----TYIP--------------------------H----PLLSRQDFSRF-ALDYLVFGNAFLEQRHSV 116 (340) Q Consensus 72 ~i~~k~n~~~~----~~~p--------------------------n----p~~~~~~~~~~-~~~~ll~Gnay~~i~r~~ 116 (340) ++......... .+.| + ..+++..+..+ +..++..|.+++.+.+.. T Consensus 75 av~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~ 154 (548) T protein:vir:95 75 LLDRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGR 154 (548) T ss_pred HHHHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecc Confidence 33322222221 1111 1 12233334443 567889999999887643 Q ss_pred C-------ceeEEEEEecCcceeeccc---------------Cc-eEEEEeC-----------CceEEEEccccEEEecC Q lcl|Aclame:pro 117 T-------GQLIKLLTSPAKYTRRGVD---------------DS-VFWFVEN-----------FTQPHEFAPDTVFHLLE 162 (340) Q Consensus 117 ~-------G~~~~L~pl~~~~~~~~~~---------------~~-~~y~~~~-----------~~~~~~~~~~dvih~r~ 162 (340) . ..+..|..|+|.++....+ +. ..|.+.. ......+++++|||+.. T Consensus 155 ~~~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~ 234 (548) T protein:vir:95 155 VPNYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAY 234 (548) T ss_pred cccccCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheeccc Confidence 2 2467888888866532111 11 1233321 11245688999999988 Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccc-ccc Q lcl|Aclame:pro 163 PDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLF-FYS 241 (340) Q Consensus 163 ~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~-vl~ 241 (340) +.--...-|+|.+..++..+.....-++....--+=.+...++|+.+++... ..+.-...-....... .|.++ .|. T Consensus 235 ~~r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~--~~~~~~~~~~~~~~~~-pG~iv~~L~ 311 (548) T protein:vir:95 235 RKRIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSY--TVEPGKDRKNRTIPIA-PGMVFDDLE 311 (548) T ss_pred ccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccc--cCCCCccccccccccc-CCccccccC Confidence 7655678899999988877766666655555555556666777765433211 0000000000000000 12222 233 Q ss_pred CCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH---- Q lcl|Aclame:pro 242 PNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF---- 317 (340) Q Consensus 242 ~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i---- 317 (340) | |-+++.++.+..-..|.+..+.....||+.+|||-+.|-. +. ++|||++.+....|.+..-. ++..+ T Consensus 312 p-----Ge~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltg-D~-s~nYSS~R~~l~e~~r~~~~-~q~~~i~~~ 383 (548) T protein:vir:95 312 P-----GEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSR-AY-DGTYSAQRQELVEGWLGYDL-LQHEFIDYW 383 (548) T ss_pred C-----CceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhc-cc-chhHHHHHHHHHHHHHHHHH-HHHHHHHHH Confidence 3 4456666655556788999999999999999999877632 22 35898887776666543321 22211 Q ss_pred HH-HH-HhhC----ccceeeccc----ccCCCC Q lcl|Aclame:pro 318 RE-VN-DWLG----MEVIRFKEY----TLDNPE 340 (340) Q Consensus 318 e~-ln-~~l~----~~~~rf~~~----~l~~~~ 340 (340) ++ +- .||- ...+..-.| ...+.+ T Consensus 384 ~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~ 416 (548) T protein:vir:95 384 CRPVYRSWLQMYLLARKERLPADVDHRTLYAAV 416 (548) T ss_pred HHHHHHHHHHHHHHcCCcCCCCCCCchhheeee Confidence 11 11 1221 111211111 111111 No 132 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.12 E-value=6.6e-07 Score=54.47 Aligned_cols=318 Identities=11% Similarity=0.075 Sum_probs=146.0 Q ss_pred CCCCCCCcccccccCCccceEE---EECCCceeecCcchhhheeeeeecCchhhcccc--------hHHh----hhhhhc Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEA---FTFGEPVPVLDKRDILDYVECISNGKWYEPPVS--------FSGL----AKSLRS 65 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~---~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~--------~~~l----~~~~r~ 65 (340) |-+...++........+..... ..+...-. . ++.+ ..|.-+..+ +..| ..+.++ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~-~-~r~~---------~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rN 69 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASR-L-SRET---------VSWNPSLRSPDALINPLKRIADARGRDMADN 69 (553) T ss_pred Ccchhhhhhcccccccchhhhhhhccccccccc-C-CCcc---------cccccCCCChHHHHHHHHHHHHHHHHHHHhc Confidence 7776555433222222211111 01100000 0 0000 011111111 0001 123344 Q ss_pred chhhhhhhhhhhhhHHHh-hh-----------------------------------cc------CCCcHHHHHHHH-HHH Q lcl|Aclame:pro 66 AVHHSSPIYVKRNVLAST-YI-----------------------------------PH------PLLSRQDFSRFA-LDY 102 (340) Q Consensus 66 ~~~~~~~i~~k~n~~~~~-~~-----------------------------------pn------p~~~~~~~~~~~-~~~ 102 (340) |++-.+++.......... ++ ++ ..+++..++.++ ..+ T Consensus 70 n~~a~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~ 149 (553) T protein:vir:63 70 DGFTNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGY 149 (553) T ss_pred ChHHHHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHH Confidence 554444443222111110 11 11 222344445444 578 Q ss_pred HHhCCeeEEEEecCC-c--eeEEEEEecCcceeecc---c-------------Cc-eEEEEeCC--c------------- Q lcl|Aclame:pro 103 LVFGNAFLEQRHSVT-G--QLIKLLTSPAKYTRRGV---D-------------DS-VFWFVENF--T------------- 147 (340) Q Consensus 103 ll~Gnay~~i~r~~~-G--~~~~L~pl~~~~~~~~~---~-------------~~-~~y~~~~~--~------------- 147 (340) +..|.+|+.+..... | .+..|..|+|.++.... + +. .-|.+... + T Consensus 150 ~~dGE~~~~~~~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~ 229 (553) T protein:vir:63 150 VKTGEVLATAEWDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWK 229 (553) T ss_pred HhCCceEEEeeeccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCcccccccccccee Confidence 899999998765432 2 24678888876653211 1 11 12333210 0 Q ss_pred ---eEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 148 ---QPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDA 224 (340) Q Consensus 148 ---~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~ 224 (340) ....+++.+|||+..+.--+..-|+|.+..++..+.-...-++....--+=.+...++|+.+. .++...+.+... T Consensus 230 r~~~~~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~--~~~~~~~~~~~~ 307 (553) T protein:vir:63 230 FVQQSKPWGRRQVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESEL--PPEFIHSQMSGG 307 (553) T ss_pred eeccccccChhHheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCC--Chhhhhhhcccc Confidence 112467889999988766677889999988877776655555554444444555666665332 122222222211 Q ss_pred HH----------------Hhc-Cc----ccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHH Q lcl|Aclame:pro 225 MR----------------NSK-GL----GNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQ 283 (340) Q Consensus 225 ~~----------------~~~-g~----~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~ 283 (340) .. ... |. =..|.+..|.| |-+++.+..+..-..|.+..+.....||+.+|||-+ T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~p-----Ge~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye 382 (553) T protein:vir:63 308 SPNADMVGIFGKYMDALKAYVGGANNIQIDGAKIPHLFP-----GTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYE 382 (553) T ss_pred cccccccccccccccccccccccccceeecCceeeecCC-----CCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHH Confidence 10 000 00 01234444444 334555554445677888999999999999999988 Q ss_pred Hc-ccccccccccccHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhCccceeecc----cccCC--------- Q lcl|Aclame:pro 284 LM-GGKPENIGSLGDVEKVAKVFVRNE-----------LSPLQDRFREVNDWLGMEVIRFKE----YTLDN--------- 338 (340) Q Consensus 284 ~l-G~~~~~~~~~~n~e~~~~~f~~~~-----------l~P~~~~ie~ln~~l~~~~~rf~~----~~l~~--------- 338 (340) .| |. -...|||++.+....|.+.. ++|+-..+.+ ..+....|..-. +-+.+ T Consensus 383 ~lt~D--~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~--~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~ 458 (553) T protein:vir:63 383 EFTRD--FSKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLE--EAIAAGEVPMPPGQTRDLFYQPLMKEALSK 458 (553) T ss_pred HHhhh--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCccCCCcccchhhcchhhhhhhhc Confidence 66 43 23467888766665555432 3333222211 001111111111 11111 Q ss_pred CC Q lcl|Aclame:pro 339 PE 340 (340) Q Consensus 339 ~~ 340 (340) .+ T Consensus 459 ~~ 460 (553) T protein:vir:63 459 CE 460 (553) T ss_pred ee Confidence 11 No 133 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=98.06 E-value=2.4e-06 Score=51.37 Aligned_cols=312 Identities=12% Similarity=0.081 Sum_probs=136.8 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccc------hHHhhhhhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVS------FSGLAKSLRSAVHHSSPIY 74 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~------~~~l~~~~r~~~~~~~~i~ 74 (340) |...-...+-- .|.. -.+++.-..--+.+.+++.|.. ...|-+.+..++|..+|+. T Consensus 1 ~~~~~~~~~gl---------------~p~r---l~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~~D~hi~s~l~ 62 (488) T protein:vir:95 1 MADITETQESL---------------PPFR---MGEVGSLGLKVKNGRIYEEPRQALRFPESIKTFQLMMRDPAVAASVN 62 (488) T ss_pred CCCccccCCCC---------------CHHH---HHHHHHHhhccccchhhccchhhhcccchHHHHHHHhhChHHHHHHH Confidence 44432221111 1110 0112211111122333433322 1122233344777777776 Q ss_pred hhhhhHHHh---hhccCCCcH-------------------HHHHHHHH---HHHHhCCeeEEEEecC------------- Q lcl|Aclame:pro 75 VKRNVLAST---YIPHPLLSR-------------------QDFSRFAL---DYLVFGNAFLEQRHSV------------- 116 (340) Q Consensus 75 ~k~n~~~~~---~~pnp~~~~-------------------~~~~~~~~---~~ll~Gnay~~i~r~~------------- 116 (340) .+...+... +.|+...+. ..|+.++. +.+.+|-+.++++... T Consensus 63 ~Rk~av~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~lda~~~G~s~~Eivw~~~~~~~~~~~~~~~ 142 (488) T protein:vir:95 63 IIKMFVRKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVMSFCTYGFCVNEKVYKKRQGKKGKYQSKFD 142 (488) T ss_pred HHHHHHhcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHHHhhcccceeeeeeeecccccccccccccc Confidence 665554432 233221110 11334443 4457899999998853 Q ss_pred Cce--eEEEEEecCc---ceeecccCceEEEEeCC----------------ceEEEEcccc-EEEecCCCCCCCcccccc Q lcl|Aclame:pro 117 TGQ--LIKLLTSPAK---YTRRGVDDSVFWFVENF----------------TQPHEFAPDT-VFHLLEPDINQEIYGLPE 174 (340) Q Consensus 117 ~G~--~~~L~pl~~~---~~~~~~~~~~~y~~~~~----------------~~~~~~~~~d-vih~r~~~~~~~~~G~sp 174 (340) +|. +..|.+.|+. +.....+++........ ...+.+++.. |+|..... .+..||.+. T Consensus 143 dg~~~~~~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~-~g~p~g~gL 221 (488) T protein:vir:95 143 DGLIGWAKLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDE-YGNPEGRSP 221 (488) T ss_pred CCeeeeeeeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCC-CCccchhhH Confidence 232 4556666653 22333333322211111 1223455555 45554443 566789999 Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeC-C--CCcCHHHHHHHHHHHHHh----cCcccccccccccCCc--- Q lcl|Aclame:pro 175 YLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVT-D--PAQSATDVESLRDAMRNS----KGLGNFKNLFFYSPNG--- 244 (340) Q Consensus 175 ~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~-~--~~~~~e~~~~l~~~~~~~----~g~~n~~~~~vl~~~~--- 244 (340) +..+......-....++...|.+.-+.|--+.+.+ + +..++++.+.+.+.+.+. .++..++ +++..+. T Consensus 222 lr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag--~iiP~g~~~~ 299 (488) T protein:vir:95 222 LLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAG--LIWPRYIDPD 299 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhh--eeeccccccc Confidence 99999999888899999888888643333333332 1 112333344444444322 2222222 2222221 Q ss_pred -cccccceeeccchh-hHHHHHHHHHhhHHHHHHHhcCCHHHcccc----cccccccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 245 -KPDGIKIVPLSEVA-TKDDFFNIKKASAADLMDAHRVPFQLMGGK----PENIGSLGDVEKVAKVFVRNELSPLQDRFR 318 (340) Q Consensus 245 -~~~g~~~~pl~~~~-~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~----~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie 318 (340) +...++++-++... .-..|.+.-++-.++|..+. +|-. ..++|+++-. +....-..+.+.-.++.|+ T Consensus 300 ~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~i------LGqtLT~~~~~~Gs~Al~-~vh~ev~~~i~~aDa~~i~ 372 (488) T protein:vir:95 300 TKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAF------MSDVLAMGQSKYGSFSLA-DSKTSLLAMSVDILLKQIK 372 (488) T ss_pred cchhhhhhhccccccCCchhHHHHHHHHHHHHHHHH------hccccccccCcchhhhHH-HHHHHHHHHHHHHHHHHHH Confidence 11122333333322 22346666677777887754 3331 1222333322 2222333344555555665 Q ss_pred H-HHHhhCccceeec--------ccccCCCC Q lcl|Aclame:pro 319 E-VNDWLGMEVIRFK--------EYTLDNPE 340 (340) Q Consensus 319 ~-ln~~l~~~~~rf~--------~~~l~~~~ 340 (340) + ||+.|...++.++ .+.++..| T Consensus 373 ~tln~~li~~l~~~Nfg~~~~~P~~~~~~~e 403 (488) T protein:vir:95 373 NVINRDLVAQTYALNMWDDEEHVQITYDDIE 403 (488) T ss_pred HHHHHHHHHHHHHhcCCCCCCccEEEecCcC Confidence 4 6654433222221 12223222 No 134 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=97.63 E-value=2.2e-05 Score=46.17 Aligned_cols=323 Identities=10% Similarity=0.049 Sum_probs=135.7 Q ss_pred CCCCCCCcc-cccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhc--ccchHHhhhhhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKA-VAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEP--PVSFSGLAKSLRSAVHHSSPIYVKR 77 (340) Q Consensus 1 m~~~~~~~~-~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~--pv~~~~l~~~~r~~~~~~~~i~~k~ 77 (340) |.=-.+-.. .+..........++.-..+- .+. .....++-+..+.+ ..-+.--..+.++|++-.+++.... T Consensus 1 m~~~~~~~~a~~~~~~~~~~~~~y~aa~~~----~~~--~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 74 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGASAYEGASGG----HRW--QDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWV 74 (495) T ss_pred CCcccccccccchhhhhHHHhhhhhccccC----ccc--CCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 332221111 00000000001111100000 000 00000000000110 0000011133455665555554333 Q ss_pred hhHHH-hhhccC--------------------------CCcHHHHHH-HHHHHHHhCCeeEEEEec--CCc--eeEEEEE Q lcl|Aclame:pro 78 NVLAS-TYIPHP--------------------------LLSRQDFSR-FALDYLVFGNAFLEQRHS--VTG--QLIKLLT 125 (340) Q Consensus 78 n~~~~-~~~pnp--------------------------~~~~~~~~~-~~~~~ll~Gnay~~i~r~--~~G--~~~~L~p 125 (340) +.... .++|++ .+++..+.. ++..++..|.+|+.+... ..| .+..|.. T Consensus 75 ~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lql 154 (495) T protein:vir:10 75 AAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQI 154 (495) T ss_pred HhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEE Confidence 22221 122222 223333444 456788999999887653 233 4678888 Q ss_pred ecCcceeecc------c-------------Cc-eEEEEeC----C-------ceEEEEccccEEEecCCCCCCCcccccc Q lcl|Aclame:pro 126 SPAKYTRRGV------D-------------DS-VFWFVEN----F-------TQPHEFAPDTVFHLLEPDINQEIYGLPE 174 (340) Q Consensus 126 l~~~~~~~~~------~-------------~~-~~y~~~~----~-------~~~~~~~~~dvih~r~~~~~~~~~G~sp 174 (340) |+|..+.... + +. ..|.+.. + .+...+++++|+|+....+ ...-|+|. T Consensus 155 iepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~~r~-gQ~RGis~ 233 (495) T protein:vir:10 155 IEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTVLTV-RSDAGAPW 233 (495) T ss_pred echhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccccCC-CcccCcch Confidence 8887653210 1 10 1233321 1 1245688999999975444 56779985 Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCc----ccccccccccCCccccccc Q lcl|Aclame:pro 175 YLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGL----GNFKNLFFYSPNGKPDGIK 250 (340) Q Consensus 175 ~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~----~n~~~~~vl~~~~~~~g~~ 250 (340) + +....+.-...-++....--+=.+...++|+..++ ++..-..+-..-....+. =..|.+..|.| |.+ T Consensus 234 l-a~i~~l~~l~~y~dael~~a~i~A~~~~fi~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~p-----Ge~ 305 (495) T protein:vir:10 234 F-QLLLRLNELDQYEDAELVRKKTAALFAAFIQEATA--DSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQP-----GQE 305 (495) T ss_pred h-HHHHHHHHhhHHHHHHHHHHHHhhhheeeeecCCC--ccccccccCccccccCcccceecCCceeeecCC-----CCe Confidence 4 43333433333333333333334555666654322 111111000000000000 12234555544 444 Q ss_pred eeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc-ccccccccccccHHHHHHHHHHHHHHH---H-HHHHHH-HH-Hh Q lcl|Aclame:pro 251 IVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSLGDVEKVAKVFVRNELSP---L-QDRFRE-VN-DW 323 (340) Q Consensus 251 ~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~~n~e~~~~~f~~~~l~P---~-~~~ie~-ln-~~ 323 (340) ++.++.+..-..|.+..+.....||+.+|||-+.| |. ..+.|||++.+....|.+..-.- + +..+++ +- .| T Consensus 306 i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD--~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~ 383 (495) T protein:vir:10 306 VKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGD--LRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWF 383 (495) T ss_pred eeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 66555544556788888899999999999999876 43 33467888877666655433211 1 111211 11 12 Q ss_pred h----Cccceeeccc-----ccCCCC Q lcl|Aclame:pro 324 L----GMEVIRFKEY-----TLDNPE 340 (340) Q Consensus 324 l----~~~~~rf~~~-----~l~~~~ 340 (340) | ....+...+| .+.+.+ T Consensus 384 l~~a~l~G~i~~p~~~~~~~~~~~~~ 409 (495) T protein:vir:10 384 MDFAVASGAVVIPDYLQRRRYYNRVS 409 (495) T ss_pred HHHHHHcCCCCCCCchhhhHhhhccc Confidence 2 1111222111 111222 No 135 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=95.96 E-value=0.0012 Score=36.60 Aligned_cols=282 Identities=11% Similarity=0.118 Sum_probs=109.1 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchh--hcccch-HHhhhhhhc-chhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWY--EPPVSF-SGLAKSLRS-AVHHSSPIYVK 76 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~--~~pv~~-~~l~~~~r~-~~~~~~~i~~k 76 (340) |+..+.|... +.+| ..|+.- ..++.. ..+....+. ..+-.-++..- T Consensus 1 l~~~~~r~~~--------------------------~~~y----Y~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vds~ 50 (410) T protein:vir:95 1 MNLYQSRVNL--------------------------RYKH----YAMQHYEAPTGITIPAHIRAKYQAVLGWAAKGVDSL 50 (410) T ss_pred CCcchhhHHH--------------------------HHHH----hcCCCCccccchhccHHHHhHHHhhcchhHHHHHHh Confidence 2222111111 0111 111110 000000 001000110 01111111100 Q ss_pred hh------------hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---e-- Q lcl|Aclame:pro 77 RN------------VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---V-- 139 (340) Q Consensus 77 ~n------------~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---~-- 139 (340) +. .+-..+.-|.+ .........+.+.+|.+|+.+..+..|++ .+.+++|..+....+.. . T Consensus 51 a~rl~~~Gf~~~d~~l~~i~~~N~l--d~~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP~~~~~i~Dp~~~~~~~ 127 (410) T protein:vir:95 51 ADRLIFRAFANDDFNVTEIFDRNNP--DIFFDSAILSALIGSCSFVYISKGEDDEV-RLQVIESSNATGVIDPITGLLVE 127 (410) T ss_pred HhhhccccccCCCchHHHHHhhcCh--HHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEEeCCCCceEE Confidence 00 00011111111 12234556788999999999999888875 57777776554332221 0 Q ss_pred EEEE--e-CCce---EEEEccc---------------------cEEEecCCCCCCCcccccch----hhhHHHHHHHHHH Q lcl|Aclame:pro 140 FWFV--E-NFTQ---PHEFAPD---------------------TVFHLLEPDINQEIYGLPEY----LSALNSAWLNESA 188 (340) Q Consensus 140 ~y~~--~-~~~~---~~~~~~~---------------------dvih~r~~~~~~~~~G~sp~----~~a~~~i~~~~aa 188 (340) .+.+ . .++. ...+.++ .|++|.+..-.++.+|.|.+ ..+.+++.-...- T Consensus 128 al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~ 207 (410) T protein:vir:95 128 GYAVLARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLER 207 (410) T ss_pred EEEEEEecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHH Confidence 0111 1 1111 1112222 24555432112455777744 3333333333333 Q ss_pred HHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHH Q lcl|Aclame:pro 189 TLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKK 268 (340) Q Consensus 189 ~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 268 (340) ..-...||. .|--++. +...+.+..+ .|+.. .++++.+..+.+..+.++..+...+-+ .|++..+ T Consensus 208 ~~~~~e~~a---~pqr~i~--G~d~d~~~~~----~~~~~-----~~~i~~~~~~~~~~~~~v~q~~~~~l~-~~~~~l~ 272 (410) T protein:vir:95 208 ADITAEFYS---WPQKYIL--GLDPDAEPME----KWKAT-----VSSLLTISSSDKGVKPSVGQFTTASMS-PFTEQLR 272 (410) T ss_pred HHHHHHHhc---chhheee--ccCCCCCcCc----hhhhh-----hhhheeccCCCCCCcceEEecCCCChH-HHHHHHH Confidence 333344553 3433332 2111222222 22221 123444433333345566555433222 4999999 Q ss_pred hhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc--------------------- Q lcl|Aclame:pro 269 ASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFREVNDWLGME--------------------- 327 (340) Q Consensus 269 ~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~ln~~l~~~--------------------- 327 (340) .....|+++=++|++.+|....+.++..-+. ....|++.+.+.-++.+|.- T Consensus 273 ~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~--------a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~ 344 (410) T protein:vir:95 273 TAAAGFAGEMGLTLDDLGFVSDNPSSVEAIK--------ASHENLRLAGRKAQRSLGAGLLNVAYVAACLRDEFRYTRSQ 344 (410) T ss_pred HHHHHHhhhcCCCHHHhccccCchhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc Confidence 9999999999999999996543222211112 12222222222222111110 Q ss_pred ----ceeecccccCCCC Q lcl|Aclame:pro 328 ----VIRFKEYTLDNPE 340 (340) Q Consensus 328 ----~~rf~~~~l~~~~ 340 (340) .++|.+. .+++ T Consensus 345 ~~~~~v~W~p~--~d~~ 359 (410) T protein:vir:95 345 FVRTAVKWEPL--FEAD 359 (410) T ss_pred cceeeEEeeec--CCcc Confidence 0122211 1122 No 136 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=95.85 E-value=0.0014 Score=36.31 Aligned_cols=312 Identities=14% Similarity=0.079 Sum_probs=120.9 Q ss_pred CCCCCCCccccccc-CCc--cceEEEECCCceeecC-cchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTA-SAP--QKMEAFTFGEPVPVLD-KRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVK 76 (340) Q Consensus 1 m~~~~~~~~~~~~~-~~~--~~~~~~~f~~p~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k 76 (340) ||||-......... .+. .++ +|-.+..-++ .++- .+ +.-.|...+.+..|..++|.+.--+.++..- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd---~l~~~~~glg~~r~~-----~~-~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~ 71 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARM---GLMVPTMGLDNKRHS-----AW-CEYGFPELVTYENLYSLYRRGGIAHGAVEKL 71 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHH---HHHHHHhcCCcccch-----hh-hhcCCcccCCHHHHHHHHhcCchhHHHHHhh Confidence 99995431110000 000 000 1111111111 0110 00 0001222334444555555444322333211 Q ss_pred hhhHHHh-------hhccCC-------------CcHHHHHHHHHH---HHHhCCeeEEEEe-cC---------CceeEEE Q lcl|Aclame:pro 77 RNVLAST-------YIPHPL-------------LSRQDFSRFALD---YLVFGNAFLEQRH-SV---------TGQLIKL 123 (340) Q Consensus 77 ~n~~~~~-------~~pnp~-------------~~~~~~~~~~~~---~ll~Gnay~~i~r-~~---------~G~~~~L 123 (340) +...-.. ...... .....|.++... -.++|-+.+.+.- ++ .|.+..| T Consensus 72 ~d~~~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i 151 (449) T protein:vir:10 72 VGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKV 151 (449) T ss_pred hhhhhhcCcccccCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcEEEEEEecCCCCCCcccccCcceeeE Confidence 1110000 000000 001122222211 1367777776643 32 2356667 Q ss_pred EEecCcceeec---cc--C-----ceEEEEeC-----CceEEEEccccEEEecCCCCCCCcccccchhhhHHHHHHH-HH Q lcl|Aclame:pro 124 LTSPAKYTRRG---VD--D-----SVFWFVEN-----FTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLN-ES 187 (340) Q Consensus 124 ~pl~~~~~~~~---~~--~-----~~~y~~~~-----~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~-~a 187 (340) .|+....+.+. .+ . ..+|++.. ......+.+..|+||... +.-|.|-++.+.+.+... .. T Consensus 152 ~v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~----~~~g~~~L~~~yn~l~~~~~~ 227 (449) T protein:vir:10 152 SVSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKV 227 (449) T ss_pred EeeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCC----CCCChhHHHHHHHHhhhHHHh Confidence 77654333221 11 1 13466542 123456788889988543 233777777776644222 22 Q ss_pred HHHHHHHHHHccCC-----------CceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccc Q lcl|Aclame:pro 188 ATLFRRKYYQNGAH-----------AGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) Q Consensus 188 a~~~~~~~f~NG~~-----------p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~ 256 (340) +.-+...+++|-.+ ..++....+ ...++..+++.+..+....+- ..+++ .. +-+++.++. T Consensus 228 ~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~-~~~e~~~~~~~~~~~~~~~~~--~~~~i-~~-----~~d~~~~~~ 298 (449) T protein:vir:10 228 EGGSGESFLKNAARQLNVNFEKEIDFTNLASLYG-VSIDELQDKFNEVAGEINRGN--DVLMT-TQ-----GATVTPLVT 298 (449) T ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhh-CCchHHHHHHHHHHHHHhccc--hheee-cC-----CcceEEEec Confidence 22222333333211 111111111 123333444444444332211 12333 22 223555544 Q ss_pred hhhHHHHHHHHHhhHHHHHHHhcCCHHHc-ccccccccccccHHHHHHHHH------HHHHHHHHHHHHH-HHH-hhCc- Q lcl|Aclame:pro 257 VATKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSLGDVEKVAKVFV------RNELSPLQDRFRE-VND-WLGM- 326 (340) Q Consensus 257 ~~~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~~n~e~~~~~f~------~~~l~P~~~~ie~-ln~-~l~~- 326 (340) +..+ +.++-....++||++-+||-..| |..+ ++++.-+. .+.|+ +..|.|.++++-+ |-. -+|. T Consensus 299 ~~sg--l~d~l~~~~q~iaaa~~IP~t~L~Gqsp---~glnst~D-~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~ 372 (449) T protein:vir:10 299 SVAD--PTATYNVNLQTAAAGVDIPTRILIGNQQ---AERSSTED-QKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA 372 (449) T ss_pred ccCC--hhHHHHHHHHHHHHHhCCCeeeeeccCc---cccccchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCC Confidence 4333 33444556788999999999766 5443 33333232 34444 2335666555543 211 1221 Q ss_pred --cc-eeecc-cccCCCC Q lcl|Aclame:pro 327 --EV-IRFKE-YTLDNPE 340 (340) Q Consensus 327 --~~-~rf~~-~~l~~~~ 340 (340) ++ |.|++ +...+.| T Consensus 373 ~~d~~i~f~pL~~~t~kE 390 (449) T protein:vir:10 373 VAKKAVIWDDLNEQTGTE 390 (449) T ss_pred CCceeEEeCCCCCCCHHH Confidence 21 44554 2222222 No 137 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=95.68 E-value=0.00018 Score=41.05 Aligned_cols=334 Identities=13% Similarity=0.095 Sum_probs=152.9 Q ss_pred CCCCCCCcccccccCCccce------EEEECCCceeec-------Ccch-------hhhee-eeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM------EAFTFGEPVPVL-------DKRD-------ILDYV-ECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~------~~~~f~~p~~~~-------~~~~-------~~~~~-~~~~~~~~~~~pv~~~~l 59 (340) |.-..-|..+..+++.+.+. .+=...+|-..+ .+++ .++-+ |+-+--+|+...+++.-| T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 54332111111111111000 000111221111 1111 11111 111122344444443221 Q ss_pred h--------hhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCc------eeEE-EE Q lcl|Aclame:pro 60 A--------KSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTG------QLIK-LL 124 (340) Q Consensus 60 ~--------~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G------~~~~-L~ 124 (340) - .+......+...+..+........-..++--.+.++.+..++-+-|.+|+-+.--..| .++. .+ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:86 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 1 0111111222222233333333333444445577888899999999999888643333 2222 22 Q ss_pred EecCcceeecccCceEEEEeCCceEEEEccc-cEEEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 125 TSPAKYTRRGVDDSVFWFVENFTQPHEFAPD-TVFHLL--EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAH 201 (340) Q Consensus 125 pl~~~~~~~~~~~~~~y~~~~~~~~~~~~~~-dvih~r--~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~ 201 (340) .+-+..+.... ++.- .....+..++|..+ +++ +| .|+|..-.+--||+.+++.++.--...++-.++.-+.-.. T Consensus 161 ~vt~~ei~~~~-~~~~-i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~ 237 (629) T protein:vir:86 161 ALTPEEVRASE-KKTI-IELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) T ss_pred eechHHhhhcc-Ccee-eEcCCCCcceeeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHh Confidence 33333333212 2222 22333444555443 444 55 4566667788899999998888777777766666666666 Q ss_pred CceEEEeCCCCc-------------CH--------HHHHHHHHHHH----Hhc---Ccccccccccc-cCCcccccccee Q lcl|Aclame:pro 202 AGYIMYVTDPAQ-------------SA--------TDVESLRDAMR----NSK---GLGNFKNLFFY-SPNGKPDGIKIV 252 (340) Q Consensus 202 p~gil~~~~~~~-------------~~--------e~~~~l~~~~~----~~~---g~~n~~~~~vl-~~~~~~~g~~~~ 252 (340) -.|||.++.... .+ -..+.+.+.+- ... +...+--++|+ .|+..-++++.. T Consensus 238 gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hl 317 (629) T protein:vir:86 238 GNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) T ss_pred hCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEE Confidence 666665542110 00 02333444432 111 22222233333 343334455555 Q ss_pred eccchhhHHHHHHHHHhhHHHHHHHhcCCHHH-cccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH-hh----- Q lcl|Aclame:pro 253 PLSEVATKDDFFNIKKASAADLMDAHRVPFQL-MGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VND-WL----- 324 (340) Q Consensus 253 pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~-lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~-~l----- 324 (340) .+. +.-+..-+.+|+-....+|...-|||.. ||+..+ +|.=+.-+....=++.-|.|.+..|++ |.+ +| T Consensus 318 kf~-~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd--~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le 394 (629) T protein:vir:86 318 KFD-NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSN--SNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) T ss_pred eec-CchhHHHHhhHHHHHHHHHhccCCchhhheeccCC--ccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHH Confidence 544 2334456789999999999999999965 576322 121122333344455667788777765 433 32 Q ss_pred --Ccc----ceeeccccc----CCCC Q lcl|Aclame:pro 325 --GME----VIRFKEYTL----DNPE 340 (340) Q Consensus 325 --~~~----~~rf~~~~l----~~~~ 340 (340) |-+ ++=|+...| +.+| T Consensus 395 ~eGiDp~kYvvW~DaS~Lt~dPd~~d 420 (629) T protein:vir:86 395 REGIDPNAYVVWHDASQLTVDPDKTD 420 (629) T ss_pred HhCCCHHHhEeeecCcccccCCCCcH Confidence 211 222333222 1122 No 138 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=95.51 E-value=0.00022 Score=40.61 Aligned_cols=334 Identities=13% Similarity=0.090 Sum_probs=152.4 Q ss_pred CCCCCCCcccccccCCccce------EEEECCCceeec-------Ccch-------hhhee-eeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM------EAFTFGEPVPVL-------DKRD-------ILDYV-ECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~------~~~~f~~p~~~~-------~~~~-------~~~~~-~~~~~~~~~~~pv~~~~l 59 (340) |.-..-|..+..+++.+.+. .+=...+|-..+ .+++ .++-+ |+-+--+|+...+++.-| T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 54332111111111111000 000111221111 1111 11111 111122344444443221 Q ss_pred h--------hhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCc------eeEE-EE Q lcl|Aclame:pro 60 A--------KSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTG------QLIK-LL 124 (340) Q Consensus 60 ~--------~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G------~~~~-L~ 124 (340) - .+......+...+..+........-..++--.+.++.+..++-+-|.+|+-+.--..| .++. .+ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:99 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 1 0111111222222233333333333444445577888899999999999888643333 2222 22 Q ss_pred EecCcceeecccCceEEEEeCCceEEEEc-cccEEEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 125 TSPAKYTRRGVDDSVFWFVENFTQPHEFA-PDTVFHLL--EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAH 201 (340) Q Consensus 125 pl~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~dvih~r--~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~ 201 (340) .+-+..+.... ++.-.... .+..++|. ..|++ +| .++|..-.+--||+.+++.++.--...++-.++.-+.-.. T Consensus 161 ~vt~~ei~~~~-~~~~i~lP-~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~ 237 (629) T protein:vir:99 161 ALTPEEVRASE-KKTIIELP-TGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) T ss_pred eechHHhhhcc-CceeEEcC-CCCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHh Confidence 33333332212 22222223 34444444 34544 55 5566667788899999998888777777766666666666 Q ss_pred CceEEEeCCCCc-------------CH--------HHHHHHHHHHH----Hhc---Ccccccccccc-cCCcccccccee Q lcl|Aclame:pro 202 AGYIMYVTDPAQ-------------SA--------TDVESLRDAMR----NSK---GLGNFKNLFFY-SPNGKPDGIKIV 252 (340) Q Consensus 202 p~gil~~~~~~~-------------~~--------e~~~~l~~~~~----~~~---g~~n~~~~~vl-~~~~~~~g~~~~ 252 (340) -.|||.++.... .+ -..+.+.+.+- ... +...+--++|+ .|+..-++++.. T Consensus 238 gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hl 317 (629) T protein:vir:99 238 GNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) T ss_pred hCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEE Confidence 666765542110 00 02333444432 111 22222233333 343334455555 Q ss_pred eccchhhHHHHHHHHHhhHHHHHHHhcCCHHH-cccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH-hh----- Q lcl|Aclame:pro 253 PLSEVATKDDFFNIKKASAADLMDAHRVPFQL-MGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VND-WL----- 324 (340) Q Consensus 253 pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~-lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~-~l----- 324 (340) .++ +.-+..-+.+|+-....+|...-|||.. ||+..+ +|.=+.-+....=++.-|.|.+..|++ |.+ +| T Consensus 318 kf~-~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd--~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le 394 (629) T protein:vir:99 318 KFD-NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSN--SNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) T ss_pred eec-CchhHHHHhhHHHHHHHHHhccCCchhhheeccCC--ccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHH Confidence 544 2334456789999999999999999965 576322 121122333334455667788777765 433 32 Q ss_pred --Ccc----ceeeccccc----CCCC Q lcl|Aclame:pro 325 --GME----VIRFKEYTL----DNPE 340 (340) Q Consensus 325 --~~~----~~rf~~~~l----~~~~ 340 (340) |-+ ++=|+...| +.+| T Consensus 395 ~eGiDp~kYvvW~DaS~Lt~dPd~~d 420 (629) T protein:vir:99 395 REGIDPNAYVVWHDASQLTVDPDKTD 420 (629) T ss_pred HhCCCHHHhEeeecCcccccCCCCcH Confidence 211 222333222 1122 No 139 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=95.39 E-value=0.0022 Score=35.19 Aligned_cols=285 Identities=12% Similarity=0.103 Sum_probs=111.3 Q ss_pred cCcchhhheee-ee--------ecCchhhc--cc-----ch-HHhhhhhhcc-hhhhhhhhhhhhhHHHhhhccCCC--- Q lcl|Aclame:pro 32 LDKRDILDYVE-CI--------SNGKWYEP--PV-----SF-SGLAKSLRSA-VHHSSPIYVKRNVLASTYIPHPLL--- 90 (340) Q Consensus 32 ~~~~~~~~~~~-~~--------~~~~~~~~--pv-----~~-~~l~~~~r~~-~~~~~~i~~k~n~~~~~~~pnp~~--- 90 (340) |+.. +++++. .+ ...+||+- ++ .. ..+....+.. .+-.-++. .++.....+... T Consensus 1 ~~~~-~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVd----s~a~rl~~~Gf~~~d 75 (409) T protein:vir:94 1 MTEK-GIGYLRFKLSVHKRRAEMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGVD----SLADRLVFREFENDD 75 (409) T ss_pred CCHH-HHHHHHHHHHHHhHHHHHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHHH----HhHhhcccCcccCCc Confidence 4432 222221 00 01122221 11 00 1111111110 11111111 111111111110 Q ss_pred --c---------HHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-----eEEEEeC---CceE-- Q lcl|Aclame:pro 91 --S---------RQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-----VFWFVEN---FTQP-- 149 (340) Q Consensus 91 --~---------~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-----~~y~~~~---~~~~-- 149 (340) - .........+.+.+|.+|+.+..+..|+| .+.+++|..+....+.. ..|.+.. .+.. T Consensus 76 ~~l~~i~~~N~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~ 154 (409) T protein:vir:94 76 FTVNEIFEENNPDIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTEGYAVLERDENNNVVL 154 (409) T ss_pred hHHHHHHHhcChhHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceeeeEEEEEecCCCceEE Confidence 0 11233556678899999999999988875 57777776543322211 0111110 0000 Q ss_pred -EEEccc----------------------cEEEecCCCCCCCcccccch----hhhHHHHHHHHHHHHHHHHHHHccCCC Q lcl|Aclame:pro 150 -HEFAPD----------------------TVFHLLEPDINQEIYGLPEY----LSALNSAWLNESATLFRRKYYQNGAHA 202 (340) Q Consensus 150 -~~~~~~----------------------dvih~r~~~~~~~~~G~sp~----~~a~~~i~~~~aa~~~~~~~f~NG~~p 202 (340) ..+.++ .|++|.+..-.++.+|.|.+ ..+.+++.-...-..-...||.+ | T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~---p 231 (409) T protein:vir:94 155 EAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSF---P 231 (409) T ss_pred EEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcC---h Confidence 011111 25666533223567888865 23334333333333333445543 4 Q ss_pred ceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCH Q lcl|Aclame:pro 203 GYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPF 282 (340) Q Consensus 203 ~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp 282 (340) --++. +...+.+..+.++... ++++.+..+.+..+.++..+....- ..|++..+....+++++-++|+ T Consensus 232 qr~i~--G~d~d~~~~~~~~~~~---------~~i~~~~~d~dg~~~~v~q~~~~~l-~~~~~~l~~~~~~~a~~t~lP~ 299 (409) T protein:vir:94 232 QKYVT--GLSDDAEPMETWKATV---------SSMLQFTKDEDGDKPTLGQFTQPSM-SPFTEQLRTAAAGFAGETGLTL 299 (409) T ss_pred hheeE--ecCCCCcccchhhhhH---------HHhhcCCCCCCCCCceEEecCCCCh-hHHHHHHHHHHHHHhhhcCCCH Confidence 33332 2111222233333222 1233333222223455655543222 2499999999999999999999 Q ss_pred HHcccccccccccccHHHHHHHHHHHHHHHHHH----HHHHHHHhh----Cc-c---------ceeecccccCCCC Q lcl|Aclame:pro 283 QLMGGKPENIGSLGDVEKVAKVFVRNELSPLQD----RFREVNDWL----GM-E---------VIRFKEYTLDNPE 340 (340) Q Consensus 283 ~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~----~ie~ln~~l----~~-~---------~~rf~~~~l~~~~ 340 (340) +.+|....+.++..-+..+....... ..-..+ .++++.+.. +. + .++|.+ ..+++ T Consensus 300 ~~lg~~~~NpsSa~Al~a~~~~L~~~-a~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~p--~~~~~ 372 (409) T protein:vir:94 300 DDLGFVSDNPSSVEAIKASHENLRLA-GRKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKWEP--LFEAD 372 (409) T ss_pred HHhccccCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEecc--CCCcc Confidence 99997543322221222222111111 111111 122222211 10 0 022331 11222 No 140 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=94.74 E-value=0.0036 Score=33.96 Aligned_cols=285 Identities=12% Similarity=0.105 Sum_probs=111.6 Q ss_pred cCcchhhheee---------eeecCchhhc--cc-----ch-HHhhhhhhc-chhhhhhhhhhhhhHHHhhhccCCC--- Q lcl|Aclame:pro 32 LDKRDILDYVE---------CISNGKWYEP--PV-----SF-SGLAKSLRS-AVHHSSPIYVKRNVLASTYIPHPLL--- 90 (340) Q Consensus 32 ~~~~~~~~~~~---------~~~~~~~~~~--pv-----~~-~~l~~~~r~-~~~~~~~i~~k~n~~~~~~~pnp~~--- 90 (340) |+.. .++++. +....+||+- ++ .. ..+....+. ..+-.-++. .++.....+... T Consensus 1 ~~~~-~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVd----s~a~rl~~~Gf~~~d 75 (409) T protein:vir:16 1 MTEK-GIGYLRFKLSVHKRRAEMRYEQYAMKHVDRFKGITIPQALSQQYRSILGWCAKGVD----SLADRLVFREFENDD 75 (409) T ss_pred CCHH-HHHHHHHHHHHHhHHHHHHHHHHhccCchhhcchhhhHHHHHHHhhhcChhHHHHH----HhHhhcccccccCcc Confidence 4432 222221 0011123321 11 10 111111111 011111111 111111111110 Q ss_pred -----------cHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-----eEEEEe---CCceE-- Q lcl|Aclame:pro 91 -----------SRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-----VFWFVE---NFTQP-- 149 (340) Q Consensus 91 -----------~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-----~~y~~~---~~~~~-- 149 (340) ..........+.+++|.+|+.+..+..|++ .+.+++|..+....+.. ..+.+. ..+.. T Consensus 76 ~~l~~i~~~N~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~a~~~~~~d~~~~~~~ 154 (409) T protein:vir:16 76 FTVNEIFEENNPDIFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTEGYAVLERDENNNVVL 154 (409) T ss_pred hHHHHHHHhcChhHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeecccccceeeeEEEEecCCCceEE Confidence 011223556678899999999999888875 56677765543222211 001110 00100 Q ss_pred -EEEccc----------------------cEEEecCCCCCCCcccccch----hhhHHHHHHHHHHHHHHHHHHHccCCC Q lcl|Aclame:pro 150 -HEFAPD----------------------TVFHLLEPDINQEIYGLPEY----LSALNSAWLNESATLFRRKYYQNGAHA 202 (340) Q Consensus 150 -~~~~~~----------------------dvih~r~~~~~~~~~G~sp~----~~a~~~i~~~~aa~~~~~~~f~NG~~p 202 (340) ..+.++ .|++|.+..-.++.+|.|.+ ..+.+++.-...-..-...||. .| T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a---~p 231 (409) T protein:vir:16 155 EAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYS---FP 231 (409) T ss_pred EEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhc---Ch Confidence 001111 25666532223466787754 3444444433333333445553 34 Q ss_pred ceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCH Q lcl|Aclame:pro 203 GYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPF 282 (340) Q Consensus 203 ~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp 282 (340) --++. |...+.+..+ .|+... ++++.+....+..+.++..+....-+ .|++..+.....++++=++|+ T Consensus 232 qr~i~--G~d~d~~~~~----~~~~~~-----~~i~~~~~d~~g~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~~s~lP~ 299 (409) T protein:vir:16 232 QKYVT--GLSDDAEPME----TWKATV-----SSMLQFTKDEDGDKPTLGQFTQPSMS-PFTEQLRTAAAGFAGETGLTL 299 (409) T ss_pred hheeE--ecCCCCCccc----hhhhhh-----hHhhccCCCCCCCCceEEecCCCChh-HHHHHHHHHHHHHhhhcCCCH Confidence 43432 2111112222 232221 23444433333345566655433222 499999999999999999999 Q ss_pred HHcccccccccccccHHHHHHHHHHHHHHHHHH----HHHHHHHhh----Cc--c--------ceeecccccCCCC Q lcl|Aclame:pro 283 QLMGGKPENIGSLGDVEKVAKVFVRNELSPLQD----RFREVNDWL----GM--E--------VIRFKEYTLDNPE 340 (340) Q Consensus 283 ~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~----~ie~ln~~l----~~--~--------~~rf~~~~l~~~~ 340 (340) +.+|....+.++..-+..+.......+ .-..+ .++++.+.. +. + .++|.+ ....+ T Consensus 300 ~~lg~~~~NpsSa~Ai~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~~--~~~~~ 372 (409) T protein:vir:16 300 DDLGFVSDNPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWEP--LFEAD 372 (409) T ss_pred HHcccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEecC--CCCcc Confidence 999975433222111222221111111 11111 112221111 10 0 022331 11111 No 141 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=93.75 E-value=0.0065 Score=32.57 Aligned_cols=313 Identities=14% Similarity=0.143 Sum_probs=122.6 Q ss_pred CCCCCCCccc-------------cc---------ccCCccceEE-E------------ECCCceeecCcchhhheeeeee Q lcl|Aclame:pro 1 MSKRKPRKAV-------------AM---------TASAPQKMEA-F------------TFGEPVPVLDKRDILDYVECIS 45 (340) Q Consensus 1 m~~~~~~~~~-------------~~---------~~~~~~~~~~-~------------~f~~p~~~~~~~~~~~~~~~~~ 45 (340) ||+|..+++. +. ++.+++.+++ | -.-+|.|.+.....+. +.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (695) T protein:vir:36 1 MSRRNAKKRAQLARTGRRPEVAKAATLAAAATIATAAAAQPVPADFARRGALNALDAAPVVEPSPSLRLARQFE-VDVSN 79 (695) T ss_pred CCccchhhHHHHhhcCCCcchhhhhhhhhhhhhhhhccccccchhhhhcccccccccccccCCCcccccceece-ecccc Confidence 9987422111 00 1111111111 1 1113444332222221 11111 Q ss_pred cCc----hhhcccc-----hHH--------------hhhhhhcchhhhhhhhhhhhhHHHhhhccCC------------- Q lcl|Aclame:pro 46 NGK----WYEPPVS-----FSG--------------LAKSLRSAVHHSSPIYVKRNVLASTYIPHPL------------- 89 (340) Q Consensus 46 ~~~----~~~~pv~-----~~~--------------l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~------------- 89 (340) .+. .+.--++ +.+ |+.+.....+ .++...+..+.--+| T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~ey------r~~~~~ia~e~~R~w~~~~~~~~e~~~~ 153 (695) T protein:vir:36 80 YTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY------RAMHEVLADECIRTWGEAIGGTKEKADT 153 (695) T ss_pred cCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccch------hhHHHHHHHHhhcccceecccchhhhhh Confidence 110 0000000 001 1111110000 000111000000000 Q ss_pred -------------------------CcHHH---HHHHHHHHHHhCCeeEEEEecC-----------------CceeEEEE Q lcl|Aclame:pro 90 -------------------------LSRQD---FSRFALDYLVFGNAFLEQRHSV-----------------TGQLIKLL 124 (340) Q Consensus 90 -------------------------~~~~~---~~~~~~~~ll~Gnay~~i~r~~-----------------~G~~~~L~ 124 (340) ..... ++..+..--+||-+.+++.-.+ .|....|. T Consensus 154 ~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ 233 (695) T protein:vir:36 154 SGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLR 233 (695) T ss_pred ccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeeeE Confidence 00011 1222223347787765553322 34455677 Q ss_pred EecCcceeecccC-----------ceEEEEeCCceEEEEccccEEEecCCCC------CCCcccccchhhhHHHHHHHHH Q lcl|Aclame:pro 125 TSPAKYTRRGVDD-----------SVFWFVENFTQPHEFAPDTVFHLLEPDI------NQEIYGLPEYLSALNSAWLNES 187 (340) Q Consensus 125 pl~~~~~~~~~~~-----------~~~y~~~~~~~~~~~~~~dvih~r~~~~------~~~~~G~sp~~~a~~~i~~~~a 187 (340) .+++.++.+.... ..||.+. |+ .+...-++.|..... ...+.|+|-.+.+...+..... T Consensus 234 ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~r 309 (695) T protein:vir:36 234 VVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLR 309 (695) T ss_pred eecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHH Confidence 8887766554321 1245554 22 234444444432211 1235699988888877766555 Q ss_pred HHHHHHHHHHccCCCceEEEeCC-CCcCHHHHHHHH---HHHHHhcCcccccccccccCCccccccceeecc--chhhHH Q lcl|Aclame:pro 188 ATLFRRKYYQNGAHAGYIMYVTD-PAQSATDVESLR---DAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLS--EVATKD 261 (340) Q Consensus 188 a~~~~~~~f~NG~~p~gil~~~~-~~~~~e~~~~l~---~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~--~~~~d~ 261 (340) +..-....... .+..++. +.- ..+.......+. +.++.++ +|.| ++++.. +.-+|...+ .+. T Consensus 310 T~~~v~~Li~~-~~v~~lk-~dla~aL~~g~~~~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~stslSG--- 377 (695) T protein:vir:36 310 TRQSVSDIVKQ-FSVSGIL-MDLAQALMPGANVDLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLSG--- 377 (695) T ss_pred HHhHHHHHHHh-hhHHHHH-HHHHHhhcChhHHHHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecccCC--- Confidence 55544444432 2222221 100 011111111222 2233333 3443 444441 122344443 333 Q ss_pred HHHHHHHhhHHHHHHHhcCCHHHc-cccccccccc-ccHHHHHHHHH-------HHHHHHHHHHHHHH-HHh-hC---cc Q lcl|Aclame:pro 262 DFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFV-------RNELSPLQDRFREV-NDW-LG---ME 327 (340) Q Consensus 262 qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~-~n~e~~~~~f~-------~~~l~P~~~~ie~l-n~~-l~---~~ 327 (340) +-++.....+.||++-+||...| |..+. ++ ++-|.-.+.|+ +..|+|.++++-++ -.- +| ++ T Consensus 378 -LddVi~qf~q~VAgaa~IPltkLfGqSPk---GlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idpd 453 (695) T protein:vir:36 378 -LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPS 453 (695) T ss_pred -HHHHHHHHHHHHHhhhcCchhhhhccCcc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc Confidence 23444456689999999999765 55443 23 44566666666 34677777765442 222 22 22 Q ss_pred c-eeecc-cccCCCC Q lcl|Aclame:pro 328 V-IRFKE-YTLDNPE 340 (340) Q Consensus 328 ~-~rf~~-~~l~~~~ 340 (340) + +.|++ +.+++.| T Consensus 454 i~~~fnPL~qmtd~E 468 (695) T protein:vir:36 454 IKWQWNALRELDDLE 468 (695) T ss_pred ceEEeCCCCCcCHHH Confidence 1 34543 3444444 No 142 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=93.64 E-value=0.0027 Score=34.70 Aligned_cols=256 Identities=13% Similarity=0.095 Sum_probs=110.2 Q ss_pred eEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHH Q lcl|Aclame:pro 20 MEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFA 99 (340) Q Consensus 20 ~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~ 99 (340) |+.|++.-. .+..++...+ +.-|..-.-|++++-...+...+ .+....-++. + T Consensus 1 ~~~~~~~~~------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~ 53 (279) T protein:vir:40 1 MSLFNLSRR------AEDVSFSTFT-----VQDPTTDLLLGKLLGLVSYFDNV---------------DYSEASKLED-L 53 (279) T ss_pred Ccccccchh------hcccceeeee-----ecCcchhHHHHHHHHHHHHhhcc---------------cchhhhhhhh-h Confidence 444443311 1111111110 11121111122222111111000 0000001111 1 Q ss_pred HHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCceEE--EEeCCceEEEEccccEEEecCCCCCCCcccccchhh Q lcl|Aclame:pro 100 LDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFW--FVENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLS 177 (340) Q Consensus 100 ~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~~~y--~~~~~~~~~~~~~~dvih~r~~~~~~~~~G~sp~~~ 177 (340) .-|.+.|.-...+...+. .+.-.....+.|- ...+....++++-.||.-|- ++.||.-+=.. T Consensus 54 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~fn~~vr~~~~~~vtVP~~Dv~Iie-----NPlv~v~~ee~ 117 (279) T protein:vir:40 54 FYWALQGKEVYRVWYGGF-----------KYYAQRVNADQFNIVVREPNRREVTIRTNDYEMLL-----NPFYGANPQRF 117 (279) T ss_pred hhhhhccceeehhhhhhH-----------HHHHhhcCcchhhhheecCCcceeEeecchhhhhh-----cchheeccchh Confidence 112233332222211111 0000000111110 01123344566666665553 34466654322 Q ss_pred hHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHh-cCcccccccccccCCccccccceeeccc Q lcl|Aclame:pro 178 ALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNS-KGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) Q Consensus 178 a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~-~g~~n~~~~~vl~~~~~~~g~~~~pl~~ 256 (340) . .-++++ .+.-.++. .+-+...++|+.+-....++.+++.+..+++. .+..+.+.+..++. |-+++.+.- T Consensus 118 ~-kM~~la--~nai~~KL-D~~~qIk~fIKTd~d~glee~kekaR~rIk~mlalAk~~nGityid~-----~ddItQL~k 188 (279) T protein:vir:40 118 G-VMFGMA--SNGIGRRL-DSQAQIKIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGS-----DDDIKQIQP 188 (279) T ss_pred h-HHHHHH--Hhhhhhhh-cccceeeeEEecCcchhHHHHHHHHHHHHHHHHHHHHhcCCeeeecC-----CceeEeecc Confidence 1 112222 22223444 67777888888664445688888888888764 45566677777653 334665543 Q ss_pred hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhCccceeecccc Q lcl|Aclame:pro 257 VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLGMEVIRFKEYT 335 (340) Q Consensus 257 ~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~~~~~rf~~~~ 335 (340) +-.- ...+--++.++..+..||||..++- ++ -.|++...|+..+|.|++...+- |.- .+|. |..|- T Consensus 189 DYSt-slk~die~lkS~l~Sq~GinekIL~----Gs----AtE~q~iAyy~rtVePILkQyek~liY--~~E~--fv~y~ 255 (279) T protein:vir:40 189 DYSG-SLQNDANLAIEIALSEYGMPRELLY----GQ----SNEVTIIAFAIQKVLPLLKQHDKNIIF--NQEN--FVAYI 255 (279) T ss_pred cccc-ccHHHHHHHHHHHHhhcCCchhhcc----cc----CchhhhhhHHHhhHHHHHHHhcccccc--hhhh--hhhhh Confidence 2110 0112223456788999999998872 22 23889999999999999988763 211 1121 11111 Q ss_pred c--------------CCCC Q lcl|Aclame:pro 336 L--------------DNPE 340 (340) Q Consensus 336 l--------------~~~~ 340 (340) - .++| T Consensus 256 ttta~gg~~~s~~~~~~~~ 274 (279) T protein:vir:40 256 STTAKGGAIESKSSKRDSE 274 (279) T ss_pred eecccCcccccccccccCC Confidence 0 1111 No 143 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=93.05 E-value=0.009 Score=31.81 Aligned_cols=281 Identities=11% Similarity=0.105 Sum_probs=110.6 Q ss_pred cCcchh---hheee-----eeecCchhhc-------ccch-HHhhhhhhc-chhhhhhhhhhhhh------------HHH Q lcl|Aclame:pro 32 LDKRDI---LDYVE-----CISNGKWYEP-------PVSF-SGLAKSLRS-AVHHSSPIYVKRNV------------LAS 82 (340) Q Consensus 32 ~~~~~~---~~~~~-----~~~~~~~~~~-------pv~~-~~l~~~~r~-~~~~~~~i~~k~n~------------~~~ 82 (340) |+...+ ...+. +....+||+. |+.. ..+..+.+. ..+-.-++..-+.- +-. T Consensus 1 m~~~~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~~~d~~l~~ 80 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTNDDFNAWE 80 (422) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceeeCCchhHHH Confidence 332211 11110 0001122221 1111 111111111 11111111111000 000 Q ss_pred hhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecC-CceeEEEEEecCcceeecccCce--------EEEEeCCceE---E Q lcl|Aclame:pro 83 TYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSV-TGQLIKLLTSPAKYTRRGVDDSV--------FWFVENFTQP---H 150 (340) Q Consensus 83 ~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~-~G~~~~L~pl~~~~~~~~~~~~~--------~y~~~~~~~~---~ 150 (340) .+.-|.+ .........+.+.+|.+|+.+.++. .|.| .+.+++|..+....+... +|....++.. . T Consensus 81 ~w~~N~l--d~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~~~~~~~~~~~ 157 (422) T protein:vir:97 81 IFKANNP--DIFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLTEGYAILESDSNGNPTLEA 157 (422) T ss_pred HHHhcCh--HHHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcceeeEEEEEecCCCcEEEEE Confidence 0111111 1122345678899999999999874 5665 577777766543332210 1111111111 0 Q ss_pred EEccc---------------------cEEEecCCCCCCCcccccch----hhhHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 151 EFAPD---------------------TVFHLLEPDINQEIYGLPEY----LSALNSAWLNESATLFRRKYYQNGAHAGYI 205 (340) Q Consensus 151 ~~~~~---------------------dvih~r~~~~~~~~~G~sp~----~~a~~~i~~~~aa~~~~~~~f~NG~~p~gi 205 (340) .+..+ .|++|.+..-....+|.|.+ ..+.+++.-...-..-...||. .|--+ T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a---~pqr~ 234 (422) T protein:vir:97 158 YFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYS---FPQKY 234 (422) T ss_pred EEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhc---chhhh Confidence 11111 25666543223456888765 2233333222222222333443 33333 Q ss_pred EEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHc Q lcl|Aclame:pro 206 MYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLM 285 (340) Q Consensus 206 l~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~l 285 (340) + .+...+....+ .|+.. .++++.+..+.+..++++..+...+-+ -|++..+.....|+++=++|++.+ T Consensus 235 i--~G~d~d~~~~~----~~~~~-----~~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~~s~lP~~~l 302 (422) T protein:vir:97 235 V--LGMDPDAKPME----KWRAT-----VSTLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMYASLFAGGSGLTLDDL 302 (422) T ss_pred h--cccCcccccCc----hhhhh-----hhhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHHHHHHhcccCCCHHHh Confidence 3 22211222222 22221 124555444333345666655543322 499999999999999999999999 Q ss_pred ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------Cc-c---------ceeecccccCCCC Q lcl|Aclame:pro 286 GGKPENIGSLGDVEKVAKVFVRNELSPLQDRFREVNDWL---------------GM-E---------VIRFKEYTLDNPE 340 (340) Q Consensus 286 G~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~ln~~l---------------~~-~---------~~rf~~~~l~~~~ 340 (340) |....+.++..-+. ....|++.+.+.-++.+ +. + .++|.+ ..+.+ T Consensus 303 g~~~~NpsSa~Ai~--------a~~~~L~~ka~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p--~~~~~ 372 (422) T protein:vir:97 303 GFPSDNPSSVESIK--------AAHENLRAAGRKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEP--LFEAD 372 (422) T ss_pred ccccCchhHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEEcc--CCCCC Confidence 97543322211122 22222222222211111 10 0 123331 00111 No 144 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=92.95 E-value=0.0012 Score=36.55 Aligned_cols=336 Identities=14% Similarity=0.145 Sum_probs=157.2 Q ss_pred CCCC-------CCC---c-ccccccCCccceE--EEECCCceeecCcch-------hhhee-eeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKR-------KPR---K-AVAMTASAPQKME--AFTFGEPVPVLDKRD-------ILDYV-ECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~-------~~~---~-~~~~~~~~~~~~~--~~~f~~p~~~~~~~~-------~~~~~-~~~~~~~~~~~pv~~~~l 59 (340) |.-. |++ + ++..-+++.+.+. .-+|.--..+-.+.+ .++-+ |+-+--+|+...+++.-| T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCRL 80 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 3221 111 1 1111111122121 000100000011111 11111 111122344444443211 Q ss_pred h-hhhhcchh--hhhhhh-----hhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEE-ecCCce----------e Q lcl|Aclame:pro 60 A-KSLRSAVH--HSSPIY-----VKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQR-HSVTGQ----------L 120 (340) Q Consensus 60 ~-~~~r~~~~--~~~~i~-----~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~-r~~~G~----------~ 120 (340) - ..++-++- -+.+-. .+........-..++--.+.++.++.++-+-|.+|+-+. |..+|- . T Consensus 81 ~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~~ 160 (631) T protein:vir:10 81 VASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRTR 160 (631) T ss_pred EeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCcccccccc Confidence 1 00110100 011111 222233333333444456788888889889999998763 333321 2 Q ss_pred EEEEEecCcceeecccCc-eEEEEeCCceEEEEccc-cE-EEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 121 IKLLTSPAKYTRRGVDDS-VFWFVENFTQPHEFAPD-TV-FHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 121 ~~L~pl~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~-dv-ih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) -+++++....+.....++ .-+.++ .+..++|..+ || +-+=.|+|..-.+--||+.+++.++.--...++-.++.-+ T Consensus 161 ~~W~~vt~~ei~~~~~g~g~~v~lp-~g~~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaak 239 (631) T protein:vir:10 161 QEWYAVSKEEIKKSNKGSGTNIVLP-TGEEHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTIANASK 239 (631) T ss_pred cceeeccHHHHhcccCcccceeecC-CCCccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHH Confidence 345566665665443333 334444 3445555443 43 2333566777778889999999998888877777777777 Q ss_pred ccCCCceEEEeCCCCc--------------------CHHHHHHHHHHH-HH---h---cCcccccccccc-cCCcccccc Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQ--------------------SATDVESLRDAM-RN---S---KGLGNFKNLFFY-SPNGKPDGI 249 (340) Q Consensus 198 NG~~p~gil~~~~~~~--------------------~~e~~~~l~~~~-~~---~---~g~~n~~~~~vl-~~~~~~~g~ 249 (340) .-..-.|||.+|.... ..-....+.+.+ +. . .+...+--++|+ .|+..-+++ T Consensus 240 SRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E~i~~i 319 (631) T protein:vir:10 240 SRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGEQIKDV 319 (631) T ss_pred HHHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCe Confidence 7777777887664211 111334444333 21 1 122222233333 343334455 Q ss_pred ceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHH-cccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH-hh-- Q lcl|Aclame:pro 250 KIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQL-MGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VND-WL-- 324 (340) Q Consensus 250 ~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~-lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~-~l-- 324 (340) +...++ +.-+..-+.+|+-....+|...-|||.. +|+..+ +|.=+.-+....=++.-|.|.+..|++ |.+ +| T Consensus 320 ~hlkf~-~ei~e~aiktR~daI~RlA~glDi~pE~LLGlGsd--~NHWsAWqI~dedVrlHI~P~l~lic~AlT~q~Lrp 396 (631) T protein:vir:10 320 KHIRFD-NEITEVAIKTRNDAIARLAMGLDVSPERLLGLGSQ--TNHWSAWQISDEDVQLHIAPVMEIFCQALTDQILRV 396 (631) T ss_pred eEEeec-CchhHHHHhhHHHHHHHHHhccCCchhhheeccCC--ccceEEEEecccceeeecchHHHHHHHHHHhhHHHH Confidence 555544 2334456789999999999999999965 576322 121122333334455667888877765 433 32 Q ss_pred -----Ccc----ceeeccccc----CCCC Q lcl|Aclame:pro 325 -----GME----VIRFKEYTL----DNPE 340 (340) Q Consensus 325 -----~~~----~~rf~~~~l----~~~~ 340 (340) |-+ ++=|+...| +.+| T Consensus 397 ~Le~eGvDp~kYvvW~DaS~Lt~dPdr~d 425 (631) T protein:vir:10 397 TLAREGIDPSKYVVWYDPSQLTIDPDKSD 425 (631) T ss_pred HHHHhCCCHHHhEeeecCcccccCCCCcH Confidence 211 233443332 1122 No 145 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=92.88 E-value=0.0096 Score=31.64 Aligned_cols=317 Identities=14% Similarity=0.080 Sum_probs=142.3 Q ss_pred CCCCCCC-c-ccccccCCccceEE------------EECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPR-K-AVAMTASAPQKMEA------------FTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~-~-~~~~~~~~~~~~~~------------~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) |=-.... + +....++.--...+ ..+-.||-...-.+|.+-.-+..+ ...||.+. |..+ T Consensus 37 ~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEVd~AideIvneaiv~d~---~~~pV~v~-l~~~---- 108 (533) T protein:vir:58 37 MIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTVLDIIADECTIPNE---NGNIVDVV-TKDI---- 108 (533) T ss_pred cccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcchhhHHHhhhceeeEecC---CCceeEee-cccc---- Confidence 2221100 0 11000000000001 112244432222233332222222 23455432 1111 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEec-CCceeEEEEEecCcceeeccc---CceEEE Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHS-VTGQLIKLLTSPAKYTRRGVD---DSVFWF 142 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~-~~G~~~~L~pl~~~~~~~~~~---~~~~y~ 142 (340) ..+..+..|-..++ .|. .--..++..|++.|..|..++-+ ..+.+.+|..|+|..++.... ...||. T Consensus 109 -e~s~~iK~kI~~ll-df~-------~~~~~~fR~WYVDGriy~Hkiik~~k~GI~elr~lDPr~i~~vr~~~t~~eyyv 179 (533) T protein:vir:58 109 -ELAKAILSYLDYVI-NIE-------KNAYPIIRNMIKYGDMFLHILEKGSDGTIEKFQVVSPYIFSKRYNPETDTWYYV 179 (533) T ss_pred -cccHHHHHHHHHHh-cch-------hhhhHHHHhhhhcceeEEEeccCCcccchhhheecCCeeeEEEEeeccceEEEe Confidence 12333444332211 121 11234466779999999988643 456788999999988865443 234555 Q ss_pred Ee-------CCceEEEEccccEEEecC-CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC Q lcl|Aclame:pro 143 VE-------NFTQPHEFAPDTVFHLLE-PDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS 214 (340) Q Consensus 143 ~~-------~~~~~~~~~~~dvih~r~-~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~ 214 (340) +. .....+.++.+.|+|+.. ....++-+++|-+..|...+..-.-.++..--|=-.-+.=.-|+++.=+.+. T Consensus 180 y~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDAlVIYRisRAPeRRvFYIDVGNlp 259 (533) T protein:vir:58 180 ITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDALMLYRVVRSVDRRVFYVDVGNVP 259 (533) T ss_pred ecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHHHHHHhhcCChhheEEEEeecCCC Confidence 54 223456788899999863 2334567899988888665555444444433332233333445555323332 Q ss_pred H-HHHHHHHHHHHHhcCc----ccc------ccc----cccc-------CCccccccceeeccchhhHHHHHHHHHhhHH Q lcl|Aclame:pro 215 A-TDVESLRDAMRNSKGL----GNF------KNL----FFYS-------PNGKPDGIKIVPLSEVATKDDFFNIKKASAA 272 (340) Q Consensus 215 ~-e~~~~l~~~~~~~~g~----~n~------~~~----~vl~-------~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~ 272 (340) + .+.+-++.-+..++.- .+. ++. -+++ .|+ .|.+++.|.- .. +--++--.+-.. T Consensus 260 k~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGg--rgTEI~TLpG-g~-lgemeDV~YF~k 335 (533) T protein:vir:58 260 PDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDR--RAVEIDILQG-SK-VDLAEDVEYMLN 335 (533) T ss_pred ccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCC--ccceeeecCC-CC-CCcHHHHHHHHH Confidence 2 2233333333322110 011 111 1111 122 2444444432 12 222233345568 Q ss_pred HHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHHhhC-ccceeecc--cccCCCC Q lcl|Aclame:pro 273 DLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VNDWLG-MEVIRFKE--YTLDNPE 340 (340) Q Consensus 273 ~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~~l~-~~~~rf~~--~~l~~~~ 340 (340) .+-++.+||.+.++-..+ .+-.+.+.-....|. .-|.-+..++.+ |.++|- ..++.=.+ |++...- T Consensus 336 kLy~ALnVP~sRl~~e~~-fgr~~eItRDEiKF~-KFI~rLR~rF~~ll~~qLilk~iit~eew~~~f~~Dn 405 (533) T protein:vir:58 336 RLISALKVPKAFIGYEGD-VNAKNTLATQDIKFN-NTIKRIQGFFVEELERMVRMNKEFADQDFRLVMNRSN 405 (533) T ss_pred HHHHHhCCCeeecCCCCC-CccchhhhHHHHHHH-HHHHHHHHHHHHHHhcccccccCcchhheeeeeeccc Confidence 889999999999875332 121222322233344 447777777776 445552 11221111 2222222 No 146 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=92.63 E-value=0.011 Score=31.40 Aligned_cols=269 Identities=9% Similarity=0.012 Sum_probs=102.4 Q ss_pred CCCCC----CCccc---ccccC-Ccc------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhh Q lcl|Aclame:pro 1 MSKRK----PRKAV---AMTAS-APQ------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLA 60 (340) Q Consensus 1 m~~~~----~~~~~---~~~~~-~~~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~ 60 (340) +.+.. ++... ..... +.. ....|.||+|..+ T Consensus 54 ~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~----------------------------- 104 (474) T protein:vir:97 54 DKDNDIVKQMKKVDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTY----------------------------- 104 (474) T ss_pred ccccchhcccchhccccccccccCcceeecchHHHHHHHHHhhhhcCCcee----------------------------- Confidence 22110 00000 00000 000 0001222222111 Q ss_pred hhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-- Q lcl|Aclame:pro 61 KSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-- 138 (340) Q Consensus 61 ~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-- 138 (340) ++-.......+..+..|. .......++.+.+.+|.+|+.+..+..|++ .+..++|..+-+..+.. T Consensus 105 ----------~~~d~~~~~~l~~~~~n~--~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~ 171 (474) T protein:vir:97 105 ----------SCEDENVLKVIHDVLDTR--WDNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKER 171 (474) T ss_pred ----------ccCcHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCC Confidence 011111111222222222 123445667888999999999999888864 45556665443332211 Q ss_pred -------eEEEEeCCceEEEEcccc-----------------------------------EEEecCCCCCCCcccccchh Q lcl|Aclame:pro 139 -------VFWFVENFTQPHEFAPDT-----------------------------------VFHLLEPDINQEIYGLPEYL 176 (340) Q Consensus 139 -------~~y~~~~~~~~~~~~~~d-----------------------------------vih~r~~~~~~~~~G~sp~~ 176 (340) ++|..........+.++. |++++. ..+|.|.+. T Consensus 172 ~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e 246 (474) T protein:vir:97 172 EELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-----NPEEVSDIW 246 (474) T ss_pred CceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-----CcCCCCcHH Confidence 111111110011111111 333332 235777777 Q ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccc Q lcl|Aclame:pro 177 SALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) Q Consensus 177 ~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~ 256 (340) .....++.-..+..-..+.++..+.|-.++ ++...++ .+.....+ ...+++.+..++ ++++.. . T Consensus 247 ~v~~liDa~n~~~s~~~~~~~~~~~~~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~~---~~~~l~--~ 310 (474) T protein:vir:97 247 MYKSIIDAIDKRLSDAQNMFDESVELIYIL--KGYEGED--LEEFMRGL-------KYYKAINVDGDG---GVETIQ--V 310 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCCC---ceeEEe--e Confidence 666666554444333344445555555555 3432221 11111111 112344444333 344433 2 Q ss_pred hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH-------------HHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 257 VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA-------------KVFVRNELSPLQDRFREVNDW 323 (340) Q Consensus 257 ~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~-------------~~f~~~~l~P~~~~ie~ln~~ 323 (340) ......+.+..+.-.+.|...-++|..-.+-. +++ .+.++.. +..+...|+-+++.+.+ . T Consensus 311 ~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~---~~n-~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---~ 383 (474) T protein:vir:97 311 EVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKF---GSA-PSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID---F 383 (474) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCccccCcccc---ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H Confidence 23445566667777888888888885321100 111 1111111 11222223333322222 2 Q ss_pred hCccc------eeecccccCCCC Q lcl|Aclame:pro 324 LGMEV------IRFKEYTLDNPE 340 (340) Q Consensus 324 l~~~~------~rf~~~~l~~~~ 340 (340) ++... +.|.+ .+...+ T Consensus 384 ~~~~~d~~~i~v~f~~-~~p~~~ 405 (474) T protein:vir:97 384 NNLKTDVKDIEISFNF-NRMMND 405 (474) T ss_pred hCCCcccceeeEEecc-CcccCH Confidence 22211 23432 111112 No 147 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=92.63 E-value=0.011 Score=31.40 Aligned_cols=269 Identities=9% Similarity=0.012 Sum_probs=102.4 Q ss_pred CCCCC----CCccc---ccccC-Ccc------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhh Q lcl|Aclame:pro 1 MSKRK----PRKAV---AMTAS-APQ------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLA 60 (340) Q Consensus 1 m~~~~----~~~~~---~~~~~-~~~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~ 60 (340) +.+.. ++... ..... +.. ....|.||+|..+ T Consensus 54 ~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~----------------------------- 104 (474) T protein:vir:94 54 DKDNDIVKQMKKVDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTY----------------------------- 104 (474) T ss_pred ccccchhcccchhccccccccccCcceeecchHHHHHHHHHhhhhcCCcee----------------------------- Confidence 22110 00000 00000 000 0001222222111 Q ss_pred hhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-- Q lcl|Aclame:pro 61 KSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-- 138 (340) Q Consensus 61 ~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-- 138 (340) ++-.......+..+..|. .......++.+.+.+|.+|+.+..+..|++ .+..++|..+-+..+.. T Consensus 105 ----------~~~d~~~~~~l~~~~~n~--~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~ 171 (474) T protein:vir:94 105 ----------SCEDENVLKVIHDVLDTR--WDNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKER 171 (474) T ss_pred ----------ccCcHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCC Confidence 011111111222222222 123445667888999999999999888864 45556665443332211 Q ss_pred -------eEEEEeCCceEEEEcccc-----------------------------------EEEecCCCCCCCcccccchh Q lcl|Aclame:pro 139 -------VFWFVENFTQPHEFAPDT-----------------------------------VFHLLEPDINQEIYGLPEYL 176 (340) Q Consensus 139 -------~~y~~~~~~~~~~~~~~d-----------------------------------vih~r~~~~~~~~~G~sp~~ 176 (340) ++|..........+.++. |++++. ..+|.|.+. T Consensus 172 ~~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e 246 (474) T protein:vir:94 172 EELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN-----NPEEVSDIW 246 (474) T ss_pred CceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC-----CcCCCCcHH Confidence 111111110011111111 333332 235777777 Q ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccc Q lcl|Aclame:pro 177 SALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) Q Consensus 177 ~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~ 256 (340) .....++.-..+..-..+.++..+.|-.++ ++...++ .+.....+ ...+++.+..++ ++++.. . T Consensus 247 ~v~~liDa~n~~~s~~~~~~~~~~~~~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~~---~~~~l~--~ 310 (474) T protein:vir:94 247 MYKSIIDAIDKRLSDAQNMFDESVELIYIL--KGYEGED--LEEFMRGL-------KYYKAINVDGDG---GVETIQ--V 310 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCCC---ceeEEe--e Confidence 666666554444333344445555555555 3432221 11111111 112344444333 344433 2 Q ss_pred hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH-------------HHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 257 VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA-------------KVFVRNELSPLQDRFREVNDW 323 (340) Q Consensus 257 ~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~-------------~~f~~~~l~P~~~~ie~ln~~ 323 (340) ......+.+..+.-.+.|...-++|..-.+-. +++ .+.++.. +..+...|+-+++.+.+ . T Consensus 311 ~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~---~~n-~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---~ 383 (474) T protein:vir:94 311 EVPVSSTKEYIDLMRVYIMEFGQGVDFQTDKF---GSA-PSGIALKFLYGNLDLKANKLKNKATVAIQELISFIID---F 383 (474) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCccccCcccc---ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H Confidence 23445566667777888888888885321100 111 1111111 11222223333322222 2 Q ss_pred hCccc------eeecccccCCCC Q lcl|Aclame:pro 324 LGMEV------IRFKEYTLDNPE 340 (340) Q Consensus 324 l~~~~------~rf~~~~l~~~~ 340 (340) ++... +.|.+ .+...+ T Consensus 384 ~~~~~d~~~i~v~f~~-~~p~~~ 405 (474) T protein:vir:94 384 NNLKTDVKDIEISFNF-NRMMND 405 (474) T ss_pred hCCCcccceeeEEecc-CcccCH Confidence 22211 23432 111112 No 148 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=92.48 E-value=0.011 Score=31.28 Aligned_cols=297 Identities=8% Similarity=0.009 Sum_probs=105.7 Q ss_pred CCCCCCCccc-----ccccCCccceEEEECC--CceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV-----AMTASAPQKMEAFTFG--EPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~-----~~~~~~~~~~~~~~f~--~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) +++++++-.. .....-..+. ...+. .+.+.....-+. ..|...-|+.. +..+-.++-+-.+- T Consensus 36 ~~~~~~~~~~~~~YY~g~~~i~~~~-~~~~~~~~~~~~~~~~ri~--------~n~~~~ivd~~--~~~l~g~~~~~~~~ 104 (472) T protein:vir:93 36 HLEKLPEISIGQEYYEQRPDIVKEP-KPVDATGAVDPLKPDDRMI--------TNFHANLVDQK--VSYIVGKPIAFKHT 104 (472) T ss_pred HHHHHHHHHHHHHHhcccccccccc-chhhccccccccccccccc--------cchHHHHHHHH--hhhhcccCeeeccC Confidence 1111111000 0000000000 00000 000000000000 00000000000 00000000000001 Q ss_pred hhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---------eEEEEe Q lcl|Aclame:pro 74 YVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---------VFWFVE 144 (340) Q Consensus 74 ~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~y~~~ 144 (340) .......+..+..|.+ ......+..+.+.+|.||+.+..+..|++ .+..++|..+-+..+.. ++|... T Consensus 105 d~~~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~d~~~-~i~~~~p~~~~~i~d~~~~~~~~~~ir~~~~~ 181 (472) T protein:vir:93 105 DDEVVKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLE 181 (472) T ss_pred ChHHHHHHHHHHhccH--HHHHHHHHHHHhhcCeEEEEEEECCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEee Confidence 1111122222222321 23344567888999999999999888874 46666665544332110 111111 Q ss_pred CCceEEEEcccc-----------------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQPHEFAPDT-----------------------------------VFHLLEPDINQEIYGLPEYLSALNSAWLNESAT 189 (340) Q Consensus 145 ~~~~~~~~~~~d-----------------------------------vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~ 189 (340) .......+.+.. |++++. ...|.|.+......++....+. T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----n~~g~s~~e~v~~liDa~~~~~ 256 (472) T protein:vir:93 182 NETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRRL 256 (472) T ss_pred cceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-----CCCCCCchhhhHHHHHHHHHHH Confidence 111111111111 333321 2357787877666665544444 Q ss_pred HHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHh Q lcl|Aclame:pro 190 LFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKA 269 (340) Q Consensus 190 ~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~ 269 (340) .-..+-++..+.|-.++. +.. .++.......++. .+++.+..++ ++++. ........+.+..+. T Consensus 257 s~~~~~~~~~~~~~~~~~--g~~--~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~l--~~~~~~~~~~~~~~~ 320 (472) T protein:vir:93 257 SDLSNTFKDSNELTYVLT--NYD--DQELPEFKRLLRY-------YGAIKVSDNG---GVDTI--QVEVPVENSKKYLDE 320 (472) T ss_pred HHHHHHHHHhcCceeEee--cCC--cccchhhHHHHhh-------ccccccCCCC---cceeE--eecCCHHHHHHHHHH Confidence 444455566666755553 321 1211222222211 1223333322 34443 223345667788888 Q ss_pred hHHHHHHHhcCCHHHcccccccccccccHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhCccc------ee Q lcl|Aclame:pro 270 SAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVF-------------VRNELSPLQDRFREVNDWLGMEV------IR 330 (340) Q Consensus 270 ~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f-------------~~~~l~P~~~~ie~ln~~l~~~~------~r 330 (340) -.+.|+..-++|....+...++. +.+.....+ +...|+-+++.+ ...+|... +. T Consensus 321 l~~~i~~~s~~p~~~~~~~~~n~----Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li---~~~~~~~~~~~~i~v~ 393 (472) T protein:vir:93 321 LYQKIMLFGQAVDFSSDKFGSAP----SGVALEFLYTNLNLKADKLARKAKVAIQELLWFV---FEHFDIKGEHKDVDIS 393 (472) T ss_pred HHHHHHHHhCCCCCCccccccCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCcccceeeEE Confidence 88999999999865433211111 111111111 111111111111 12222110 33 Q ss_pred ecccccCCCC Q lcl|Aclame:pro 331 FKEYTLDNPE 340 (340) Q Consensus 331 f~~~~l~~~~ 340 (340) |.+ .+...+ T Consensus 394 f~~-~~p~~~ 402 (472) T protein:vir:93 394 FNY-NKVANT 402 (472) T ss_pred eCC-CCCCCH Confidence 432 111111 No 149 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=92.46 E-value=0.011 Score=31.25 Aligned_cols=317 Identities=14% Similarity=0.143 Sum_probs=124.5 Q ss_pred CCCCCCCccc-----------c----------cccCCccceEE-------E------ECCCceeecCcchhhheeeeeec Q lcl|Aclame:pro 1 MSKRKPRKAV-----------A----------MTASAPQKMEA-------F------TFGEPVPVLDKRDILDYVECISN 46 (340) Q Consensus 1 m~~~~~~~~~-----------~----------~~~~~~~~~~~-------~------~f~~p~~~~~~~~~~~~~~~~~~ 46 (340) ||+|..++++ + ....+++.|.+ + ..-+|.|.+.....+. +.+... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (694) T protein:vir:10 1 MSRRNAKKRTQLARTGRRPEVAKAAALAAAATIATAAAQPVPADFARRGALNALDAAPVAEPSPSLRLARQFE-VDVSNY 79 (694) T ss_pred CCccchhhHHHHhhcCCCcchhhhhhhhhhhhhhhcCCCcccCCccccccchhhcccccCCCCcchhhhhhcc-ccccCC Confidence 9987422211 0 00111222221 1 1124444332222221 111100 Q ss_pred Cc------hhhcccc---hHH--------------hhhhhhcchhhhhhhhhhhhhHHH-hh-----------------h Q lcl|Aclame:pro 47 GK------WYEPPVS---FSG--------------LAKSLRSAVHHSSPIYVKRNVLAS-TY-----------------I 85 (340) Q Consensus 47 ~~------~~~~pv~---~~~--------------l~~~~r~~~~~~~~i~~k~n~~~~-~~-----------------~ 85 (340) +. -|..-.+ ..+ |+.+.....+ .++...-+..... +. . T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~ey-r~~~~~ia~e~~R~w~~~~~~~~e~~~~~g~~~~ 158 (694) T protein:vir:10 80 TPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY-RAMHEVLADECIRTWGEAIGGTKEKADTSGLAAG 158 (694) T ss_pred CccccchhhhhhccCcccccchhhhhccCcchHHHHHHHhhccch-hhHHHHHHHHhhcccceeccccchhhhhhccccc Confidence 00 0100000 001 1111111000 0000000000000 00 0 Q ss_pred cc--CCC-------------cHHH---HHHHHHHHHHhCCeeEEEEecC-----------------CceeEEEEEecCcc Q lcl|Aclame:pro 86 PH--PLL-------------SRQD---FSRFALDYLVFGNAFLEQRHSV-----------------TGQLIKLLTSPAKY 130 (340) Q Consensus 86 pn--p~~-------------~~~~---~~~~~~~~ll~Gnay~~i~r~~-----------------~G~~~~L~pl~~~~ 130 (340) .| +.. .... ++..+..--+||-+.+++.-.+ .|....|..+++.+ T Consensus 159 ~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~ 238 (694) T protein:vir:10 159 GNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYW 238 (694) T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeecCccccccccccccccccCcceeeeEeecccc Confidence 00 000 0011 1222223347787765554322 34455677888776 Q ss_pred eeecccC-----------ceEEEEeCCceEEEEccccEEEecCCCC------CCCcccccchhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 131 TRRGVDD-----------SVFWFVENFTQPHEFAPDTVFHLLEPDI------NQEIYGLPEYLSALNSAWLNESATLFRR 193 (340) Q Consensus 131 ~~~~~~~-----------~~~y~~~~~~~~~~~~~~dvih~r~~~~------~~~~~G~sp~~~a~~~i~~~~aa~~~~~ 193 (340) +.+.... ..||.+. |+ .+...-++.|..... ...+.|+|-.+.+...+.....+..-.. T Consensus 239 vtP~~~n~~dP~spdfgkP~~y~V~--G~--~IH~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~e~V~~~~rT~~~v~ 314 (694) T protein:vir:10 239 VTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVS 314 (694) T ss_pred cccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHHHHHhHHH Confidence 6554321 1245554 22 234444444432211 1235699988888877766655555555 Q ss_pred HHHHccCCCceEEEeCC--CCcCHHHHHHHH---HHHHHhcCcccccccccccCCccccccceeecc--chhhHHHHHHH Q lcl|Aclame:pro 194 KYYQNGAHAGYIMYVTD--PAQSATDVESLR---DAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLS--EVATKDDFFNI 266 (340) Q Consensus 194 ~~f~NG~~p~gil~~~~--~~~~~e~~~~l~---~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~--~~~~d~qf~e~ 266 (340) ..... .+..++. ++ ..+.......+. +.++.++ +|.| ++++.. +.-+|...+ .+. +-++ T Consensus 315 ~Li~~-~~v~~lk--~dla~~L~~g~~~~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~stslSG----LddV 380 (694) T protein:vir:10 315 DIVKQ-FSVSGIL--MDLAQALMPGANVDLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLSG----LDAL 380 (694) T ss_pred HHHHh-hhhHHHH--HHHHHhhcChhHHHHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecccCC----HHHH Confidence 54433 2222221 11 011111222222 2233333 3443 444441 122344443 333 2344 Q ss_pred HHhhHHHHHHHhcCCHHHc-cccccccccc-ccHHHHHHHHH-------HHHHHHHHHHHHHH-HHh-hC---ccc-eee Q lcl|Aclame:pro 267 KKASAADLMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFV-------RNELSPLQDRFREV-NDW-LG---MEV-IRF 331 (340) Q Consensus 267 ~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~-~n~e~~~~~f~-------~~~l~P~~~~ie~l-n~~-l~---~~~-~rf 331 (340) .....+.||++-+||...| |..+. ++ ++-|.-.+.|+ +..|+|.++++-++ -.- +| +++ +.| T Consensus 381 i~qf~q~VAgaa~IPltkLfGqSPk---GlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i~~~f 457 (694) T protein:vir:10 381 QAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSIKWQW 457 (694) T ss_pred HHHHHHHHHhhhcCchhhhhccCcc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceEEe Confidence 4456689999999999765 55443 23 44566666666 34677777765442 222 22 221 345 Q ss_pred cc-cccCCCC Q lcl|Aclame:pro 332 KE-YTLDNPE 340 (340) Q Consensus 332 ~~-~~l~~~~ 340 (340) ++ +.+++.| T Consensus 458 nPL~qmtd~E 467 (694) T protein:vir:10 458 NALRELDDLE 467 (694) T ss_pred CCCCCcCHHH Confidence 43 3444444 No 150 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=92.37 E-value=0.012 Score=31.18 Aligned_cols=278 Identities=8% Similarity=-0.025 Sum_probs=104.3 Q ss_pred CCCCC-------------CCcccccccCC--------ccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKRK-------------PRKAVAMTASA--------PQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~~-------------~~~~~~~~~~~--------~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l 59 (340) +.++. ++........- .-....|.||.|..+.... +. T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~----------~~------------ 108 (474) T protein:vir:10 51 FKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDE----------NA------------ 108 (474) T ss_pred hcchhhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCC----------CC------------ Confidence 11100 00000000000 0001123444443221000 00 Q ss_pred hhhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc- Q lcl|Aclame:pro 60 AKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS- 138 (340) Q Consensus 60 ~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~- 138 (340) ..+......+. ..+..| ........++.+.+.+|.||..+.++..|++ .+..++|..+-+..+.. T Consensus 109 ----~~~e~~~~~l~-------~~~~~n--~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~ 174 (474) T protein:vir:10 109 ----EKNEKLKKFIT-------NFAIRN--SVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNIL 174 (474) T ss_pred ----cchHHHHHHHH-------HHHhhc--CHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCC Confidence 00000000000 011111 1123456677888999999999999888864 55566665432221111 Q ss_pred ------eEEEEeC--CceE----EEEccc--------------------------cEEEecCCCCCCCcccccchhhhHH Q lcl|Aclame:pro 139 ------VFWFVEN--FTQP----HEFAPD--------------------------TVFHLLEPDINQEIYGLPEYLSALN 180 (340) Q Consensus 139 ------~~y~~~~--~~~~----~~~~~~--------------------------dvih~r~~~~~~~~~G~sp~~~a~~ 180 (340) ++|.+.. ++.. ..+.+. .|++++. ...|.|.+..... T Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~ 249 (474) T protein:vir:10 175 EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIH 249 (474) T ss_pred ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHH Confidence 1121111 0100 001111 1344432 2247776666555 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhH Q lcl|Aclame:pro 181 SAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATK 260 (340) Q Consensus 181 ~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d 260 (340) .+..-..+..-..+.+...+.|-.++ ++..++++....++ ..+.+.+...++ ++++. ...... T Consensus 250 liDa~d~~~S~~~~~~~~~~~~~l~i--~g~~~~~~~~~~~~----------~~~~i~~~~~~~---~~~~l--~~~~~~ 312 (474) T protein:vir:10 250 LIDAYDLTMSDASSEISQTRLAYLVL--RGMGMSEEMIQETQ----------KSGAFELFDKDM---DVKYL--TKDVND 312 (474) T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhh--ccCCCCchhhhhhh----------hcceeEecCCCC---ceeEE--eccCCH Confidence 55544333333333344444454444 45445554433322 123344433332 33433 323344 Q ss_pred HHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCcccee Q lcl|Aclame:pro 261 DDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV----------AKVFVRNELSPLQDRFREVNDWLGMEVIR 330 (340) Q Consensus 261 ~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ie~ln~~l~~~~~r 330 (340) ..+.+..+.-.+.|...-++|....+-..++ .+...+.-. .+..+...|.-.++.|. ..++..... T Consensus 313 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~---~~l~~~~~~ 388 (474) T protein:vir:10 313 TMIENHLDRIEKNIMRFAKSVNFNSDEFNGN-VPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVIL---SALKRKGYN 388 (474) T ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccCC Confidence 5567777888899999999987543211111 111111110 11122222222222222 222211111 Q ss_pred ecccccCCCC Q lcl|Aclame:pro 331 FKEYTLDNPE 340 (340) Q Consensus 331 f~~~~l~~~~ 340 (340) .++++..+.+ T Consensus 389 ~~~~~~~~i~ 398 (474) T protein:vir:10 389 LDDDSYLNLI 398 (474) T ss_pred CCccccccce Confidence 2223323333 No 151 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=92.37 E-value=0.012 Score=31.18 Aligned_cols=278 Identities=8% Similarity=-0.025 Sum_probs=104.3 Q ss_pred CCCCC-------------CCcccccccCC--------ccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKRK-------------PRKAVAMTASA--------PQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~~-------------~~~~~~~~~~~--------~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l 59 (340) +.++. ++........- .-....|.||.|..+.... +. T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~----------~~------------ 108 (474) T protein:vir:94 51 FKRRPIEEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDE----------NA------------ 108 (474) T ss_pred hcchhhhhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCC----------CC------------ Confidence 11100 00000000000 0001123444443221000 00 Q ss_pred hhhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc- Q lcl|Aclame:pro 60 AKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS- 138 (340) Q Consensus 60 ~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~- 138 (340) ..+......+. ..+..| ........++.+.+.+|.||..+.++..|++ .+..++|..+-+..+.. T Consensus 109 ----~~~e~~~~~l~-------~~~~~n--~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~~~i~p~~~~~v~d~~~ 174 (474) T protein:vir:94 109 ----EKNEKLKKFIT-------NFAIRN--SVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RIKNIDPYNVIFVGDNIL 174 (474) T ss_pred ----cchHHHHHHHH-------HHHhhc--CHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EEEEEcccceEEEEcCCC Confidence 00000000000 011111 1123456677888999999999999888864 55566665432221111 Q ss_pred ------eEEEEeC--CceE----EEEccc--------------------------cEEEecCCCCCCCcccccchhhhHH Q lcl|Aclame:pro 139 ------VFWFVEN--FTQP----HEFAPD--------------------------TVFHLLEPDINQEIYGLPEYLSALN 180 (340) Q Consensus 139 ------~~y~~~~--~~~~----~~~~~~--------------------------dvih~r~~~~~~~~~G~sp~~~a~~ 180 (340) ++|.+.. ++.. ..+.+. .|++++. ...|.|.+..... T Consensus 175 ~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~ 249 (474) T protein:vir:94 175 EPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPN-----NKEMIGDAEKVIH 249 (474) T ss_pred ceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecC-----CCCCCCchHHHHH Confidence 1121111 0100 001111 1344432 2247776666555 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhH Q lcl|Aclame:pro 181 SAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATK 260 (340) Q Consensus 181 ~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d 260 (340) .+..-..+..-..+.+...+.|-.++ ++..++++....++ ..+.+.+...++ ++++. ...... T Consensus 250 liDa~d~~~S~~~~~~~~~~~~~l~i--~g~~~~~~~~~~~~----------~~~~i~~~~~~~---~~~~l--~~~~~~ 312 (474) T protein:vir:94 250 LIDAYDLTMSDASSEISQTRLAYLVL--RGMGMSEEMIQETQ----------KSGAFELFDKDM---DVKYL--TKDVND 312 (474) T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhh--ccCCCCchhhhhhh----------hcceeEecCCCC---ceeEE--eccCCH Confidence 55544333333333344444454444 45445554433322 123344433332 33433 323344 Q ss_pred HHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH----------HHHHHHHHHHHHHHHHHHHHHhhCcccee Q lcl|Aclame:pro 261 DDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV----------AKVFVRNELSPLQDRFREVNDWLGMEVIR 330 (340) Q Consensus 261 ~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~----------~~~f~~~~l~P~~~~ie~ln~~l~~~~~r 330 (340) ..+.+..+.-.+.|...-++|....+-..++ .+...+.-. .+..+...|.-.++.|. ..++..... T Consensus 313 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~---~~l~~~~~~ 388 (474) T protein:vir:94 313 TMIENHLDRIEKNIMRFAKSVNFNSDEFNGN-VPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVIL---SALKRKGYN 388 (474) T ss_pred HHHHHHHHHHHHHHHHHhCCccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhccCC Confidence 5567777888899999999987543211111 111111110 11122222222222222 222211111 Q ss_pred ecccccCCCC Q lcl|Aclame:pro 331 FKEYTLDNPE 340 (340) Q Consensus 331 f~~~~l~~~~ 340 (340) .++++..+.+ T Consensus 389 ~~~~~~~~i~ 398 (474) T protein:vir:94 389 LDDDSYLNLI 398 (474) T ss_pred CCccccccce Confidence 2223323333 No 152 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=92.22 E-value=0.012 Score=31.05 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=124.7 Q ss_pred CCCCCCCccc-----------c--c---------ccCCccceE-------------EEECCCceeecCcchhhheeeeee Q lcl|Aclame:pro 1 MSKRKPRKAV-----------A--M---------TASAPQKME-------------AFTFGEPVPVLDKRDILDYVECIS 45 (340) Q Consensus 1 m~~~~~~~~~-----------~--~---------~~~~~~~~~-------------~~~f~~p~~~~~~~~~~~~~~~~~ 45 (340) ||+|..++++ + . ++.+++.++ +--..+|.|.+.....+. +.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (698) T protein:vir:10 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFE-VDVSN 79 (698) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCccccccccce-ecccc Confidence 9887422211 0 0 001111111 112234444433222222 11111 Q ss_pred cCchhhcccchHHh------------------------hhhhhcchhhhhhhhhhhhhHHHhh--hc------------- Q lcl|Aclame:pro 46 NGKWYEPPVSFSGL------------------------AKSLRSAVHHSSPIYVKRNVLASTY--IP------------- 86 (340) Q Consensus 46 ~~~~~~~pv~~~~l------------------------~~~~r~~~~~~~~i~~k~n~~~~~~--~p------------- 86 (340) .+..=..+.. +++ +.+.....+ .++...+..+ ++ T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~ey------r~~~~~ia~e~~R~w~~~~~~~~e~~~ 152 (698) T protein:vir:10 80 YTPRERRAAS-YALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY------RAMHEVLADECIRTWGEAIGGTKEKAD 152 (698) T ss_pred CCccccchhh-hhhcccccccccchhhhccCcchHHHHHHHhhccch------hhHHHHHHHHhhcccceeccccchhhh Confidence 1110000100 111 111110000 0011110000 00 Q ss_pred --------c--CCCc-------------HHH---HHHHHHHHHHhCCeeEEEEecC-----------------CceeEEE Q lcl|Aclame:pro 87 --------H--PLLS-------------RQD---FSRFALDYLVFGNAFLEQRHSV-----------------TGQLIKL 123 (340) Q Consensus 87 --------n--p~~~-------------~~~---~~~~~~~~ll~Gnay~~i~r~~-----------------~G~~~~L 123 (340) | +... ... ++..+..--+||-+.+++.-.+ .|....| T Consensus 153 ~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~~I~kGslKGL 232 (698) T protein:vir:10 153 TSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGL 232 (698) T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceEEEEEeecCccccccccccccccccCccceee Confidence 0 0000 011 1122222337777765553322 3445567 Q ss_pred EEecCcceeecccC-----------ceEEEEeCCceEEEEccccEEEecCCCC------CCCcccccchhhhHHHHHHHH Q lcl|Aclame:pro 124 LTSPAKYTRRGVDD-----------SVFWFVENFTQPHEFAPDTVFHLLEPDI------NQEIYGLPEYLSALNSAWLNE 186 (340) Q Consensus 124 ~pl~~~~~~~~~~~-----------~~~y~~~~~~~~~~~~~~dvih~r~~~~------~~~~~G~sp~~~a~~~i~~~~ 186 (340) ..+++.++.+.... ..+|++.+ + .+...-++.+..... ...+.|+|-.+.+.+.+.... T Consensus 233 ~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G--~--~IH~SRL~~~vg~pvpd~LKp~y~f~G~Sv~q~~~e~V~~~~ 308 (698) T protein:vir:10 233 RVVEPYWVTPNNYNSINPVADDFYKPSTWWMIG--S--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWL 308 (698) T ss_pred eeecccccccchhhhccchhhccCCCceEEEec--c--eecceeEEEecCCCchhhhcchhccCCccHHHHHHHHHHHHH Confidence 88887766654321 12455542 2 234444444432211 123459999888888877666 Q ss_pred HHHHHHHHHHHccCCCceEEE-eCCCCcCHHHHHHHHHHH---HHhcCcccccccccccCCccccccceeeccchhhHHH Q lcl|Aclame:pro 187 SATLFRRKYYQNGAHAGYIMY-VTDPAQSATDVESLRDAM---RNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDD 262 (340) Q Consensus 187 aa~~~~~~~f~NG~~p~gil~-~~~~~~~~e~~~~l~~~~---~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~q 262 (340) .+..-....... .+-.++.. +- ..++.+....+...+ +.++ +|.| +++++. +.-+|...+.+-.. T Consensus 309 rT~~~v~~Li~~-~~~~~l~~dla-~aL~~g~~~~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~st~lSG-- 377 (698) T protein:vir:10 309 RTRQSVSDIVKQ-FSVSGILMDLA-QALTPGANVDLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLSG-- 377 (698) T ss_pred HHhhhHHHHHHH-hhHHHHHHHHH-HhcCChhhHHHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecCcCC-- Confidence 555555544433 12222210 00 011112222233222 3333 4444 444431 12234444422211 Q ss_pred HHHHHHhhHHHHHHHhcCCHHHc-cccccccccc-ccHHHHHHHHH-------HHHHHHHHHHHHHH-HHhh-C---ccc Q lcl|Aclame:pro 263 FFNIKKASAADLMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFV-------RNELSPLQDRFREV-NDWL-G---MEV 328 (340) Q Consensus 263 f~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~-~n~e~~~~~f~-------~~~l~P~~~~ie~l-n~~l-~---~~~ 328 (340) +-++.....+.||.+-+||...| |..+. ++ ++-|.-.+.|| +..|+|.++++-++ -.-+ | +++ T Consensus 378 LddVi~qf~q~VAgaa~IPltkLfGqSPk---GlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~idp~i 454 (698) T protein:vir:10 378 LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVDPSI 454 (698) T ss_pred HHHHHHHHHHHHHhhhcCchhhhhccCCc---ccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc Confidence 33444456689999999999766 55443 23 44566666666 34677877776542 2222 2 221 Q ss_pred -eeecc-cccCCCC Q lcl|Aclame:pro 329 -IRFKE-YTLDNPE 340 (340) Q Consensus 329 -~rf~~-~~l~~~~ 340 (340) +.|++ +.+++.| T Consensus 455 ~~~fnPL~qmtd~E 468 (698) T protein:vir:10 455 KWQWNALRELDDLE 468 (698) T ss_pred eEEeCCCCCcCHHH Confidence 34553 3444444 No 153 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=92.09 E-value=0.013 Score=30.95 Aligned_cols=290 Identities=13% Similarity=0.101 Sum_probs=109.4 Q ss_pred CCCceeecCcchhhheee-----eeecCchh--hccc-----ch-HHhhhhhhcchhhhhhhhhhhhhHHHhhhccCCC- Q lcl|Aclame:pro 25 FGEPVPVLDKRDILDYVE-----CISNGKWY--EPPV-----SF-SGLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLL- 90 (340) Q Consensus 25 f~~p~~~~~~~~~~~~~~-----~~~~~~~~--~~pv-----~~-~~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~- 90 (340) ..+.+.-+- ..+.+... +....+|| +.++ .. ..+........++.-++......+ .++... T Consensus 1 ~~~~~~~~i-~~l~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l----~~~g~~~ 75 (441) T protein:vir:80 1 MNSDELALI-EGMYDRIQRLSSWHCCIEGYYEGSNRVRDLGVAIPPELQRVQTVVSWPGIAVDALEERL----DWLGWTN 75 (441) T ss_pred CCccHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcchhcCcccchhhhhhhhhcchHHHHHHHHHhhh----ccccccC Confidence 111111000 00000000 00001122 0111 00 000011011122222222111111 111111 Q ss_pred --------------cHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---e-----EEEEeCCce Q lcl|Aclame:pro 91 --------------SRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---V-----FWFVENFTQ 148 (340) Q Consensus 91 --------------~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---~-----~y~~~~~~~ 148 (340) .......++.+.+.+|.||..+.++..|.+ .+..++|..+.+..+.. . +|....++. T Consensus 76 ~d~~~l~~i~~~n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~~~~~ 154 (441) T protein:vir:80 76 GDGYGLDGVYAANRLATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKFSADGSRLDAGLVVQQTCDPEV 154 (441) T ss_pred CChHHHHHHHHhcCHHHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEEeCCCCceeEEEEEEEEecCce Confidence 122334556788999999999999998876 46777776554322211 0 010000000 Q ss_pred --EEEEccc--------------------------cEEEecCCCCCCCcccccchh----hhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 --PHEFAPD--------------------------TVFHLLEPDINQEIYGLPEYL----SALNSAWLNESATLFRRKYY 196 (340) Q Consensus 149 --~~~~~~~--------------------------dvih~r~~~~~~~~~G~sp~~----~a~~~i~~~~aa~~~~~~~f 196 (340) ...+.++ .|+|+.+..-.++.+|.|.+. .+..++....+-..-...+| T Consensus 155 ~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~ 234 (441) T protein:vir:80 155 VEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFY 234 (441) T ss_pred EEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhh Confidence 0001111 356666443345567887653 23333333322222223333 Q ss_pred HccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 197 QNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMD 276 (340) Q Consensus 197 ~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~ 276 (340) +.|--++ .+..+++..... ++. ..++++-+.++++.+++++..+.... -.-|++..+.....|+. T Consensus 235 ---~~~~~~i--~G~~~~~~~~~~----~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i~~~~~ 299 (441) T protein:vir:80 235 ---AYPQRWV--TGVSADEFSQPG----WVL-----SMASVWAVDKDDDGDTPNVGSFPVNS-PTPYSDQMRLLAQLTAG 299 (441) T ss_pred ---cCceeee--ecCCccccccch----hhh-----cccccccCCCCCCCCcceeEecCccc-hHHHHHHHHHHHHHHhc Confidence 3443333 444444433222 111 12334444444444455655444322 22377777888999999 Q ss_pred HhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH--------HHHH----HHhhCccc----------eeeccc Q lcl|Aclame:pro 277 AHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR--------FREV----NDWLGMEV----------IRFKEY 334 (340) Q Consensus 277 ~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ie~l----n~~l~~~~----------~rf~~~ 334 (340) .-++|+..+|....+.++. +.+. +....|.=.+.. |.++ ...++... +.|.+. T Consensus 300 ~~~~p~~~~g~~~~~~~Sg---~Al~--~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~ 374 (441) T protein:vir:80 300 EAAVPERYFGFITSNPPSG---EALA--AEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDA 374 (441) T ss_pred ccCCCHHHhccCCCcchHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeEEeCCC Confidence 9999999988654322211 1111 111111111111 1111 11112111 223321 Q ss_pred ccCCCC Q lcl|Aclame:pro 335 TLDNPE 340 (340) Q Consensus 335 ~l~~~~ 340 (340) ...+.. T Consensus 375 ~~~~~~ 380 (441) T protein:vir:80 375 STPTRA 380 (441) T ss_pred CCcCHH Confidence 111110 No 154 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=92.03 E-value=0.013 Score=30.89 Aligned_cols=283 Identities=9% Similarity=-0.032 Sum_probs=106.9 Q ss_pred CCCCCCCcccccccCC---cc----ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASA---PQ----KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~---~~----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) +.++++ +..+...-. +. ....|.||+|..+. +..++.. . T Consensus 59 ~~~~~~-~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~----------~~~d~~~--------------------~--- 104 (470) T protein:vir:99 59 LTAPEK-ETGADNRIVVNSAKYVVDVYNGYFCGIEPKLA----------LLNDSSK--------------------I--- 104 (470) T ss_pred ccCccc-ccCCcceeecchHHHHHHHHhhhhccCCeeEe----------eCCchhH--------------------H--- Confidence 221111 111000000 00 00112222221110 0000000 0 Q ss_pred hhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---------eEEEEe Q lcl|Aclame:pro 74 YVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---------VFWFVE 144 (340) Q Consensus 74 ~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~y~~~ 144 (340) ..+......| ........++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. ++|... T Consensus 105 ----~~l~~~~~~n--~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~~~vr~~~~~ 177 (470) T protein:vir:99 105 ----DEIARWNRQE--NFFDTINEISKQCDIFGRSIASIYQGEDARP-HLMYSSPNHAFIIYDDTVQRQPLAFVHYQIDN 177 (470) T ss_pred ----HHHHHHHHhc--CHhHHHHHHHHHHHhcCeeEEEEEeCCCCeE-EEEEEccceeEEEEcCCCCcceEEEEEEEEEe Confidence 0000111111 1123456778889999999999999888875 46667776554332211 111111 Q ss_pred CCceE----EEEccccEEEecCCC------------------C----CCCcccccchhhhHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 145 NFTQP----HEFAPDTVFHLLEPD------------------I----NQEIYGLPEYLSALNSAWLNESATLFRRKYYQN 198 (340) Q Consensus 145 ~~~~~----~~~~~~dvih~r~~~------------------~----~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~N 198 (340) .++.. ..+.++.++++...+ | .+...|.|.+......+.....+..-....+.. T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~ 257 (470) T protein:vir:99 178 SNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLINALDKVISQKANQVEY 257 (470) T ss_pred cCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCCCcchHhHHHHHHHHHHHHHHHHHHHHH Confidence 11110 011122222211100 0 012357777776665555554444444445555 Q ss_pred cCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHh Q lcl|Aclame:pro 199 GAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAH 278 (340) Q Consensus 199 G~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f 278 (340) .+.|-.++. +..++++........+.. .+++.+.+.....+-++..+........+.+..+.-.+.|+..- T Consensus 258 ~~~~~~~i~--g~~~~~~~~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s 328 (470) T protein:vir:99 258 FDNAYMYMI--GFKLPEDDEGNPKFDFKN-------NRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMMA 328 (470) T ss_pred hcCceeeee--cCCcccccccchhhhhhh-------cceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHh Confidence 666666654 333332211111111111 12222222111223334444434445556677788899999999 Q ss_pred cCCHHHcccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCcc----------ceeecccc Q lcl|Aclame:pro 279 RVPFQLMGGKPENIGSLGDVEKVAK-------------VFVRNELSPLQDRFREVNDWLGME----------VIRFKEYT 335 (340) Q Consensus 279 ~VPp~~lG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~l~~~----------~~rf~~~~ 335 (340) ++|+...+-.. ++- +.+.... ..+...|.-.++.+. ..++.. -+.|.+.. T Consensus 329 ~~p~~~~~~~~---~n~-Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~---~~~~~~~~~~~~~~~i~v~f~~~~ 401 (470) T protein:vir:99 329 MVPNIQDKNFA---GNS-SGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVL---ATLFNNKQDQELWSELDFKFTRNL 401 (470) T ss_pred CCccccccccc---cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccCCcccccccceEEeCCCC Confidence 99975433211 111 1122111 111222222222221 122111 12233211 Q ss_pred cCCCC Q lcl|Aclame:pro 336 LDNPE 340 (340) Q Consensus 336 l~~~~ 340 (340) -.+.. T Consensus 402 p~~~~ 406 (470) T protein:vir:99 402 PEDMA 406 (470) T ss_pred CcCHH Confidence 11111 No 155 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=91.47 E-value=0.016 Score=30.48 Aligned_cols=288 Identities=9% Similarity=0.000 Sum_probs=108.8 Q ss_pred ecCcchhhheeeee--ecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhHH-HhhhccCCCcHHHHHHHHHHHHHhCC Q lcl|Aclame:pro 31 VLDKRDILDYVECI--SNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVLA-STYIPHPLLSRQDFSRFALDYLVFGN 107 (340) Q Consensus 31 ~~~~~~~~~~~~~~--~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~-~~~~pnp~~~~~~~~~~~~~~ll~Gn 107 (340) .|+...--.|-... ...+|-...|+ .++..+.-+++. +-..+.+..+ ..+..|.+. .....++.+.+.+|. T Consensus 1 ~l~~~~~~~~~~~~~~~v~n~~~~ivd--~~~~~l~~~gf~--~~d~~~~~~~~~i~~~N~~d--~~~~~~~~~a~i~G~ 74 (434) T protein:vir:98 1 MLPKNAEQAFLDFQRKARTNFCGLIAN--ASVHRLLALGVT--GPDGEPDTRASRWWQANRLD--SRQKLVWRMAMAQSA 74 (434) T ss_pred CCCCCccHHHHHhhhhhhccchHHHHH--HHHhhhccCcee--cCCCchHHHHHHHHHhcChh--HHHHHHHHHHhhcCc Confidence 11111000000000 00011111111 111111111110 0001111111 112222222 234456778899999 Q ss_pred eeEEEEecCCcee------EEEEEecCcceeecccCc--------eEEEEeCCceE------------------------ Q lcl|Aclame:pro 108 AFLEQRHSVTGQL------IKLLTSPAKYTRRGVDDS--------VFWFVENFTQP------------------------ 149 (340) Q Consensus 108 ay~~i~r~~~G~~------~~L~pl~~~~~~~~~~~~--------~~y~~~~~~~~------------------------ 149 (340) +|+.+.++..|.. ..+..++|..+.+..+.. .+|....++.. T Consensus 75 ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (434) T protein:vir:98 75 GYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTRERTGARLP 154 (434) T ss_pred eEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEeeccccccc Confidence 9999988654431 236667776543322211 01111111000 Q ss_pred -----------------EEEccccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC Q lcl|Aclame:pro 150 -----------------HEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPA 212 (340) Q Consensus 150 -----------------~~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~ 212 (340) +.+..=.|+||.+..-.++ .|.|.++.....++....+..-.....+-.+.|--+|. +.. T Consensus 155 ~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~i~--G~~ 231 (434) T protein:vir:98 155 WGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKWIK--GHK 231 (434) T ss_pred cccccceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhc--CCC Confidence 0011112566654322223 58888877766666655555444444444455544442 322 Q ss_pred cCHHH--HHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccc Q lcl|Aclame:pro 213 QSATD--VESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPE 290 (340) Q Consensus 213 ~~~e~--~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~ 290 (340) +++.. .......++...... +.++++ ++ .+.++..+..... ..|++..+....+|+++=++|++.+|.... T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~-~~---~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~~~~~~ 304 (434) T protein:vir:98 232 FAKRTDPATGMTVVDQPFVPSP--SAVWAS-EG---ENTQFGQLDATDL-SGFLKEHASDVRDMLTISQTPTYLYATDLV 304 (434) T ss_pred cccccccccccchhhhhhhccc--cccccC-CC---CCceEEEecCcch-HHHHHHHHHHHHHHhcccCCCHHHhccccC Confidence 22111 111111222111111 233333 22 2345655543322 237888888899999999999999984222 Q ss_pred cccccccHHHHHHHHHHHHHHHHHHH----HHH-H---HHh----hCcc--c----eeecccccCCCC Q lcl|Aclame:pro 291 NIGSLGDVEKVAKVFVRNELSPLQDR----FRE-V---NDW----LGME--V----IRFKEYTLDNPE 340 (340) Q Consensus 291 ~~~~~~n~e~~~~~f~~~~l~P~~~~----ie~-l---n~~----l~~~--~----~rf~~~~l~~~~ 340 (340) +. + .+.+ .|....|.=.+.. +.+ | .+. .|.. . +.|.+....+.. T Consensus 305 n~-S---g~Al--~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~ 366 (434) T protein:vir:98 305 NI-S---ADTI--GALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMA 366 (434) T ss_pred Ch-H---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHH Confidence 21 1 1211 1222222111111 111 1 111 0110 0 223322211111 No 156 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=90.92 E-value=0.018 Score=30.10 Aligned_cols=331 Identities=13% Similarity=0.036 Sum_probs=150.3 Q ss_pred CCCCCCCccccc------------cc-CCccceEEEECCCceeecCcc-hhhhee-------eeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKRKPRKAVAM------------TA-SAPQKMEAFTFGEPVPVLDKR-DILDYV-------ECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~~~~~~~~~------------~~-~~~~~~~~~~f~~p~~~~~~~-~~~~~~-------~~~~~~~~~~~pv~~~~l 59 (340) |.--|+|-+... ++ +++-....-.|-- ..+..++ +..+-. |+-+--+|+...+++.-| T Consensus 1 ~~~~rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~k-t~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR~rL 79 (646) T protein:vir:10 1 MALLKPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWK-TWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQARL 79 (646) T ss_pred CcccCCCCCCCCcccccccchhhhhhccccccCCCcceee-cCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhceeee Confidence 555444422211 11 1000000000000 0000111 111111 111222344444443221 Q ss_pred hh-hhhcchh-hhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEE---EecCCceeEEEEEecCcceeec Q lcl|Aclame:pro 60 AK-SLRSAVH-HSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQ---RHSVTGQLIKLLTSPAKYTRRG 134 (340) Q Consensus 60 ~~-~~r~~~~-~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i---~r~~~G~~~~L~pl~~~~~~~~ 134 (340) -- -++..+. .+.+-..+...+....-.....-.+.++.+..++-+-|.+|+.. .....+---.++++....+.. T Consensus 80 ~aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~Ev~~- 158 (646) T protein:vir:10 80 YVTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSAISR- 158 (646) T ss_pred eeeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHHhcc- Confidence 10 0111110 11111222222222222222333467888889999999999963 111111122344555444433 Q ss_pred ccCceEEEEeC-----CceEEEEccccEEEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEE Q lcl|Aclame:pro 135 VDDSVFWFVEN-----FTQPHEFAPDTVFHLL--EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMY 207 (340) Q Consensus 135 ~~~~~~y~~~~-----~~~~~~~~~~dvih~r--~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~ 207 (340) .++ -+.+.. +++.......+++ || .|+|..-.+--||+.+++.++.--...++-.++.-+.-..-.|||. T Consensus 159 -tg~-~~~i~~p~~~~g~~~v~~~~~d~l-vRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~GnGvLf 235 (646) T protein:vir:10 159 -TGD-EIAVRRPQQRGGSKLVLVDGQDIL-IRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGAGIMF 235 (646) T ss_pred -CCC-eeeeecCccCCCCCcceecCCceE-EEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcCceee Confidence 222 223321 2233344455653 35 4566667788899999999998888888777777777777778887 Q ss_pred eCCCC------cCHHHHHHHHHHH----HHhc---CcccccccccccCCccccc--cceeeccchh-hHHHHHHHHHhhH Q lcl|Aclame:pro 208 VTDPA------QSATDVESLRDAM----RNSK---GLGNFKNLFFYSPNGKPDG--IKIVPLSEVA-TKDDFFNIKKASA 271 (340) Q Consensus 208 ~~~~~------~~~e~~~~l~~~~----~~~~---g~~n~~~~~vl~~~~~~~g--~~~~pl~~~~-~d~qf~e~~~~~~ 271 (340) +|+.. -++-..+.+...+ .... +...+--++|+...+...+ -+++.+.... -+..-+.+|+-.. T Consensus 236 vP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR~daI 315 (646) T protein:vir:10 236 LPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMKDKAI 315 (646) T ss_pred eccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhHHHHH Confidence 76421 1222233333333 2211 2222333344332221110 1234443322 3344678999999 Q ss_pred HHHHHHhcCCHHH-cccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH-hh-------Cc-c----ceeeccccc Q lcl|Aclame:pro 272 ADLMDAHRVPFQL-MGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VND-WL-------GM-E----VIRFKEYTL 336 (340) Q Consensus 272 ~~I~~~f~VPp~~-lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~-~l-------~~-~----~~rf~~~~l 336 (340) ..+|...-|||.. +|+...+. + +.-+....=++ -|.|.+..|++ |.+ +| |- + ++=|+...| T Consensus 316 ~RlA~glDIppE~LLGlgd~NH-W--tAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS~L 391 (646) T protein:vir:10 316 ARLASSAEIPGEVLTGIGDANH-W--TAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTSTL 391 (646) T ss_pred HHHHhccCCchhheeeccccce-e--eeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCccc Confidence 9999999999976 47653222 1 22333333444 48999988875 543 33 21 1 222443333 Q ss_pred ----CCCC Q lcl|Aclame:pro 337 ----DNPE 340 (340) Q Consensus 337 ----~~~~ 340 (340) +.++ T Consensus 392 t~~pd~~d 399 (646) T protein:vir:10 392 ASKPNRLD 399 (646) T ss_pred ccCCCCcH Confidence 1222 No 157 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=90.56 E-value=0.02 Score=29.87 Aligned_cols=271 Identities=9% Similarity=0.071 Sum_probs=105.2 Q ss_pred CCCCCCCccccc-cc-CCcc------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPRKAVAM-TA-SAPQ------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~~~~~~-~~-~~~~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) +.++++...... .. .+.- ....|.||+|... T Consensus 59 ~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~----------------------------------- 103 (474) T protein:vir:96 59 LRLAPKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTF----------------------------------- 103 (474) T ss_pred hhccchhcccccccccccchhcccchHHHHHHhhhhhhcccCcee----------------------------------- Confidence 222211100000 00 0000 0011222332211 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c---- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S---- 138 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~---- 138 (340) ++-..+....+..+..|. .......++.+.+.+|.+|+.+..+..|++ .+..++|..+-+..+. . T Consensus 104 ----~~~d~~~~~~l~~~~~n~--~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 176 (474) T protein:vir:96 104 ----SSDDDKSLKTIQEVLNHK--WDDKLVDILTAASNKGIEWLQPYIDENGEF-KTFRVPAEQAIPIWTNKERDTLKAF 176 (474) T ss_pred ----ecCchHHHHHHHHHHhcC--HHHHHHHHHHHHHhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 011111222222222221 122345567788899999999999888874 3666666554433221 1 Q ss_pred -eEEEEeCCceEEEEcccc---------------------------------------EEEecCCCCCCCcccccchhhh Q lcl|Aclame:pro 139 -VFWFVENFTQPHEFAPDT---------------------------------------VFHLLEPDINQEIYGLPEYLSA 178 (340) Q Consensus 139 -~~y~~~~~~~~~~~~~~d---------------------------------------vih~r~~~~~~~~~G~sp~~~a 178 (340) ++|..........+..+. |++++. ...|.|.+... T Consensus 177 vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~g~sd~e~v 251 (474) T protein:vir:96 177 IRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKN-----NPQEMSDLFMY 251 (474) T ss_pred EEEEeecCceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEecc-----CCCCCCcHHHH Confidence 112111111111111111 333332 22477777766 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchh Q lcl|Aclame:pro 179 LNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVA 258 (340) Q Consensus 179 ~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~ 258 (340) ...+..-..+..-..+.++..+.|-.++ ++.... +.......++ ..+++.+.+. ..++++ +.... T Consensus 252 ~~liDa~d~~~S~~~~~~~~~~~~~lv~--~g~~~~--~~~~~~~~~~-------~~~~i~~~~~--~~~~~~--l~~~~ 316 (474) T protein:vir:96 252 KTIIDAMDKRLSDTQNTFDESTELIYIL--KGYEGQ--DLDEFMRNLK-------YYKAINVDGD--GSGVDT--IQIEV 316 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHhccceeee--ecCCcc--cccchhhhhh-------cCceEEecCC--CCceeE--EeecC Confidence 6666555544444455556666665554 443221 1111111111 1233443321 123443 33333 Q ss_pred hHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHH--------HHHHHHHHHHH----hhCc Q lcl|Aclame:pro 259 TKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELS--------PLQDRFREVND----WLGM 326 (340) Q Consensus 259 ~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~--------P~~~~ie~ln~----~l~~ 326 (340) ....+.+..+...+.|+..-++|..-.+- .+ +|.......+.-..+. -+-..|.++.+ .+|. T Consensus 317 ~~~~~~~~~~~l~~~i~~~s~~p~~~~~~----~~--~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~ 390 (474) T protein:vir:96 317 PVQSSKEYLDMLRDYVIEFGQGVDFQQDK----FG--NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKL 390 (474) T ss_pred ChHHHHHHHHHHHHHHHHHhCCccccccc----cc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 44556777788889999999998643211 11 1111111111111110 11111222111 1222 Q ss_pred cc------eeecccccCCCC Q lcl|Aclame:pro 327 EV------IRFKEYTLDNPE 340 (340) Q Consensus 327 ~~------~rf~~~~l~~~~ 340 (340) ++ +.|.+. +...+ T Consensus 391 ~~~~~~i~i~f~~~-~p~~~ 409 (474) T protein:vir:96 391 NIKVQDVEITFNFN-VMVNE 409 (474) T ss_pred CcccceeeEEeccC-CCcCH Confidence 11 234321 11112 No 158 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=90.46 E-value=0.021 Score=29.81 Aligned_cols=274 Identities=11% Similarity=0.023 Sum_probs=107.4 Q ss_pred CCCCCCCcccccccCCc-------cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAP-------QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~-------~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) +.++.+.+..+...-.. .....|.||+|..+. +- T Consensus 50 ~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~---------------------------------------~~ 90 (452) T protein:vir:36 50 DDEPAKDSWKPDNRLAVNFTKYIVDTFTGYFNGIPVKKS---------------------------------------HS 90 (452) T ss_pred ccCccccccCccceeecchHHHHHHHHhhhhcccCceee---------------------------------------cC Confidence 22221111110000000 000012222222110 00 Q ss_pred hhhhhhHHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc----e----EEEEe Q lcl|Aclame:pro 74 YVKRNVLAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS----V----FWFVE 144 (340) Q Consensus 74 ~~k~n~~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~----~----~y~~~ 144 (340) ..+.+..+.. +..|. .......++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. . .|... T Consensus 91 d~~~~~~l~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~ 167 (452) T protein:vir:36 91 DKEILTKLQEFDNLND--MEDEESELAKMACIYGRAFEFLYQDEDTQT-NVVYNSPENMFMVYDDTVKQEPLFAVRYGVD 167 (452) T ss_pred ChhHHHHHHHHHhhcC--hhHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEEEEEe Confidence 1111111111 11111 123456677889999999999999888875 45556665543322110 0 01111 Q ss_pred CCce-E-EEEcccc-------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQ-P-HEFAPDT-------------------------VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 145 ~~~~-~-~~~~~~d-------------------------vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) ..+. . ..+.++. |++++. ...|.|.+......+..-..+..-..+... T Consensus 168 ~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----~~~g~sd~e~v~~liDa~d~~~s~~~~~~~ 242 (452) T protein:vir:36 168 EDKKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVD 242 (452) T ss_pred cCceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecC-----CCCCCcchHHHHHHHHHHHHHHHHHHHHHH Confidence 1110 0 0111121 333322 124666665544444433333333333344 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDA 277 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~ 277 (340) ..+.|-.++ ++..++++....++. .+++.+.+++...+.++..+........+.+..+...+.|... T Consensus 243 ~~~~p~~~~--~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~ 309 (452) T protein:vir:36 243 YFSDQYLTF--LGAAVEEEDLKNIRS-----------NRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQT 309 (452) T ss_pred HhcCceeEe--ecCCcCchhhhhhhh-----------cceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHH Confidence 455565554 455555544433321 1233333333333333433333344566677778888999999 Q ss_pred hcCCHHHcccccccccccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhCcc-----c-eeecccccCC Q lcl|Aclame:pro 278 HRVPFQLMGGKPENIGSLGDVEKV-------------AKVFVRNELSPLQDRFREVNDWLGME-----V-IRFKEYTLDN 338 (340) Q Consensus 278 f~VPp~~lG~~~~~~~~~~n~e~~-------------~~~f~~~~l~P~~~~ie~ln~~l~~~-----~-~rf~~~~l~~ 338 (340) -++|..-.+ +.++-| .+.. .+..+...|...++.+..+....+.. + +.|.+. +.. T Consensus 310 s~~p~~~~~----~~gn~S-g~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~i~f~~~-~p~ 383 (452) T protein:vir:36 310 TMVANISDE----SFGSSS-GVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIEYTFTRN-EPK 383 (452) T ss_pred hCccccCcc----cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCC-CCc Confidence 999853221 111111 1111 11222333333333333322222211 1 334322 221 Q ss_pred CC Q lcl|Aclame:pro 339 PE 340 (340) Q Consensus 339 ~~ 340 (340) .+ T Consensus 384 d~ 385 (452) T protein:vir:36 384 DI 385 (452) T ss_pred CH Confidence 12 No 159 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=90.45 E-value=0.021 Score=29.81 Aligned_cols=286 Identities=12% Similarity=0.028 Sum_probs=107.4 Q ss_pred CCCCCCCcccccccCCcc--------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQ--------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~--------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) +.+++++........... ....|.||+|..+... . .. T Consensus 75 ~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~-------------------------d-----~~----- 119 (502) T protein:vir:48 75 LKSGRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYD-------------------------D-----NE----- 119 (502) T ss_pred cccccccccccccceeecchHHHHHHHHhhhhcccCeeEecC-------------------------C-----cc----- Confidence 111110000000000000 0001222222211000 0 00 Q ss_pred hhhhhhhHH-HhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc----Cc-----eEEE Q lcl|Aclame:pro 73 IYVKRNVLA-STYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD----DS-----VFWF 142 (340) Q Consensus 73 i~~k~n~~~-~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~----~~-----~~y~ 142 (340) ........+ ..+.-|. .......++.+.+.+|.||+.+.++..|++ .+..++|..+.+..+ .. ++|. T Consensus 120 ~~~~~~~~l~~~~~~N~--~~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~ir~~~ 196 (502) T protein:vir:48 120 DNSQNDDAIKRIGRIND--IDTHNRNLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAAVRYYN 196 (502) T ss_pred chhHHHHHHHHHHhhcC--HhHHHHHHHHHHhhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 000000000 0111121 123456778889999999999999988864 455666655433221 11 1222 Q ss_pred EeCC-ce---EEEEcccc------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 VENF-TQ---PHEFAPDT------------------------VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRK 194 (340) Q Consensus 143 ~~~~-~~---~~~~~~~d------------------------vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~ 194 (340) .... +. ...+.++. |++++. ...|.|.+......+..-..+..-..+ T Consensus 197 ~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~S~~~~ 271 (502) T protein:vir:48 197 RGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLN-----NADGIGDYETELYLIDLYDSAESDTAN 271 (502) T ss_pred EeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecC-----CCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 1111 10 00112222 233321 235888887777666665555555566 Q ss_pred HHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHH Q lcl|Aclame:pro 195 YYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADL 274 (340) Q Consensus 195 ~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I 274 (340) .++-.+.|-.++.-.....+++....+++... .. .. ... ...+...+.++..++-......+.+..+.-.++| T Consensus 272 ~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~-~~-~~---~~~--~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I 344 (502) T protein:vir:48 272 HMSDMADAILAIYGDLALPQGMQASDMKRTRL-MQ-LK---PPK--SADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDI 344 (502) T ss_pred HHHHhcCceeeeecCcccccccchhhhhhcce-ee-cc---ccc--cccccccCcceeEeeecCCHHHHHHHHHHHHHHH Confidence 66666666666542211122222222221110 00 00 000 0111122334444443334445666678888999 Q ss_pred HHHhcCCHHHcccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCc----c----ceeecc Q lcl|Aclame:pro 275 MDAHRVPFQLMGGKPENIGSLGDVEKVAK-------------VFVRNELSPLQDRFREVNDWLGM----E----VIRFKE 333 (340) Q Consensus 275 ~~~f~VPp~~lG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~l~~----~----~~rf~~ 333 (340) +..-++|+...+-..++. | .+.... ..+...|+-.+..+.++-...+. + -+.|.+ T Consensus 345 ~~~s~~p~~~~~~~~~n~---S-g~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~ 420 (502) T protein:vir:48 345 HVFTNTPDMSDNHFSGNA---S-GEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTP 420 (502) T ss_pred HHHhCCCCcCccccccCc---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCC Confidence 999999975543221111 1 111111 12222222222222221111111 0 022322 Q ss_pred cccCCCC Q lcl|Aclame:pro 334 YTLDNPE 340 (340) Q Consensus 334 ~~l~~~~ 340 (340) ....+.. T Consensus 421 ~~p~d~~ 427 (502) T protein:vir:48 421 NLPKSLY 427 (502) T ss_pred CCCcCHH Confidence 1111111 No 160 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=90.23 E-value=0.022 Score=29.68 Aligned_cols=273 Identities=10% Similarity=0.085 Sum_probs=101.6 Q ss_pred CCCCCCCccc-ccccCCc-c------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPRKAV-AMTASAP-Q------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~~~~-~~~~~~~-~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) +.++.+.... ......+ . ....|.||+|..+ T Consensus 59 ~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~----------------------------------- 103 (478) T protein:vir:10 59 LDAPPKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTF----------------------------------- 103 (478) T ss_pred hccccccccccccccccccceeccchHHHHHHHHHhhhccCCeee----------------------------------- Confidence 1111110000 0000000 0 0001222222111 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c---- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S---- 138 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~---- 138 (340) .+-..+....+..+..|. .......++.+.+.+|.+|+.+..+..|++ .+..++|..+.+..+. . T Consensus 104 ----~~~~d~~~~~l~~~~~n~--~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~-~~~~~~p~~~~~i~d~~~~~~~~~~ 176 (478) T protein:vir:10 104 ----GVDNDKALKQIQHTLNHK--WDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAF 176 (478) T ss_pred ----ecCChHHHHHHHHHHhcC--HHHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEE Confidence 111122222222222221 223455677889999999999999888874 4555666554433211 0 Q ss_pred -eEEEEeCCceEEEEccc---------------------------------------cEEEecCCCCCCCcccccchhhh Q lcl|Aclame:pro 139 -VFWFVENFTQPHEFAPD---------------------------------------TVFHLLEPDINQEIYGLPEYLSA 178 (340) Q Consensus 139 -~~y~~~~~~~~~~~~~~---------------------------------------dvih~r~~~~~~~~~G~sp~~~a 178 (340) ++|...+......+.++ .|++++. ..+|.|.+... T Consensus 177 v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n-----~~~g~sd~~~v 251 (478) T protein:vir:10 177 IRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKN-----NPQEVSDLFMY 251 (478) T ss_pred EEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEecc-----CCCCCCcHHHH Confidence 11111111111111112 2334432 23577777655 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchh Q lcl|Aclame:pro 179 LNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVA 258 (340) Q Consensus 179 ~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~ 258 (340) ...+..-..+..-..+.++..+.|-.++ ++...++. ......++. .+++.+ ++....++++.. ... T Consensus 252 ~~liDa~~~~~S~~~~~~~~~~~p~~~~--~g~~~~~~--~~~~~~~~~-------~~~~~~-~~~~~~~~~~l~--~~~ 317 (478) T protein:vir:10 252 KTIIDALDKRLSDTQNTFDESVELIYIL--KGYEGEDM--KDFMHNLKY-------YKAISV-AGESGSGVDTIK--VEV 317 (478) T ss_pred HHHHHHHHHHHHHHHHHHHHhhCceeee--ecCCcccc--chhhhhhhh-------cceEEe-cCCCCCcceEEe--ecC Confidence 5555444433333333444445564444 44322221 111111111 112222 111123344432 223 Q ss_pred hHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH--------HHH----HHhhCc Q lcl|Aclame:pro 259 TKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF--------REV----NDWLGM 326 (340) Q Consensus 259 ~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i--------e~l----n~~l~~ 326 (340) ....+.+..+...+.|...-++|..-.+-. + +|.......+....+.-.+... .++ ...+|. T Consensus 318 ~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~----~--~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~ 391 (478) T protein:vir:10 318 PIDSVKEYTKMLRDYIIEFGQGVDFQQDKF----G--NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRL 391 (478) T ss_pred ChHHHHHHHHHHHHHHHHHhCccccCcccc----c--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 455677777888889999999986332111 1 1222222222212221111111 111 112222 Q ss_pred cc------eeecccccCCCC Q lcl|Aclame:pro 327 EV------IRFKEYTLDNPE 340 (340) Q Consensus 327 ~~------~rf~~~~l~~~~ 340 (340) ++ +.|.+....+.. T Consensus 392 ~~~~~~i~i~f~~~~p~d~~ 411 (478) T protein:vir:10 392 DVKVQDIEITFNFNVMVNEL 411 (478) T ss_pred CcccccceEEecCCCCCCHH Confidence 11 334322211111 No 161 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=89.54 E-value=0.026 Score=29.29 Aligned_cols=311 Identities=15% Similarity=0.148 Sum_probs=124.4 Q ss_pred CCCCCCCccc-----------c--c---------ccCCccceE-------------EEECCCceeecCcchhhheeeeee Q lcl|Aclame:pro 1 MSKRKPRKAV-----------A--M---------TASAPQKME-------------AFTFGEPVPVLDKRDILDYVECIS 45 (340) Q Consensus 1 m~~~~~~~~~-----------~--~---------~~~~~~~~~-------------~~~f~~p~~~~~~~~~~~~~~~~~ 45 (340) ||+|..++++ + . ++.+++.++ +--..+|.|.+.....+. +.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (695) T protein:vir:78 1 MSRRNAKKRTQLAHTGRRPEVAKAAALAAAATIATATAAQPVPADMGRRGALNALDAAPVAEPSPSLRLARQFE-VDVSN 79 (695) T ss_pred CCccchhhhhhhhhcCCCcchhhhhhhhhhhhhhhhccccccchhhcccccccccccccccCCCcccccceece-ecccc Confidence 9887422211 0 0 001111111 112234444333222221 11111 Q ss_pred cCchhhcccchHHh------------------------hhhhhcchhhhhhhhhhhhhHHHhh--hc------------- Q lcl|Aclame:pro 46 NGKWYEPPVSFSGL------------------------AKSLRSAVHHSSPIYVKRNVLASTY--IP------------- 86 (340) Q Consensus 46 ~~~~~~~pv~~~~l------------------------~~~~r~~~~~~~~i~~k~n~~~~~~--~p------------- 86 (340) .+..=..+.. +++ +.+.....+ .++...+..+ ++ T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~ey------r~~~~~ia~e~~R~w~~~~~~~~e~~~ 152 (695) T protein:vir:78 80 YTPRERRAAS-YALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY------RAMHEVLADECIRTWGEAIGGTKEKAD 152 (695) T ss_pred CCccccchhh-hhhcccccccccchhhhccCcchHHHHHHHhhccch------hhHHHHHHHHhhcccceeccccchhhh Confidence 1110000100 111 111110000 0011110000 00 Q ss_pred --------c--CCCc-------------HHH---HHHHHHHHHHhCCeeEEEEecC-----------------CceeEEE Q lcl|Aclame:pro 87 --------H--PLLS-------------RQD---FSRFALDYLVFGNAFLEQRHSV-----------------TGQLIKL 123 (340) Q Consensus 87 --------n--p~~~-------------~~~---~~~~~~~~ll~Gnay~~i~r~~-----------------~G~~~~L 123 (340) | +... ... ++..+..--+||-+.+++.-.+ .|....| T Consensus 153 ~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~~I~kGslKGl 232 (695) T protein:vir:78 153 TSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPYTVPKGSFQGL 232 (695) T ss_pred hhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccccccCcceeee Confidence 0 0000 011 1222223347787765553322 3445567 Q ss_pred EEecCcceeecccC-----------ceEEEEeCCceEEEEccccEEEecCCCC------CCCcccccchhhhHHHHHHHH Q lcl|Aclame:pro 124 LTSPAKYTRRGVDD-----------SVFWFVENFTQPHEFAPDTVFHLLEPDI------NQEIYGLPEYLSALNSAWLNE 186 (340) Q Consensus 124 ~pl~~~~~~~~~~~-----------~~~y~~~~~~~~~~~~~~dvih~r~~~~------~~~~~G~sp~~~a~~~i~~~~ 186 (340) ..+++.++.+.... ..||.+. |+ .+...-++.|..... ...+.|+|-.+.+...+.... T Consensus 233 ~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~--G~--kIH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~e~V~~~~ 308 (695) T protein:vir:78 233 RVVEPYWVTPNNYNSINPVADDFYKPSTWWMI--GT--EVHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAMPYIDNWL 308 (695) T ss_pred EeecccccccchhhhccchhhccCCCceEEEe--ce--EEeeeeEEEecCCCchhhhhcccccCcccHHHHHHHHHHHHH Confidence 78887766554321 1245554 22 234444444432211 123569998888887777666 Q ss_pred HHHHHHHHHHHccCCCceEEEeCC--CCcCHHHHHHHH---HHHHHhcCcccccccccccCCccccccceeecc--chhh Q lcl|Aclame:pro 187 SATLFRRKYYQNGAHAGYIMYVTD--PAQSATDVESLR---DAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLS--EVAT 259 (340) Q Consensus 187 aa~~~~~~~f~NG~~p~gil~~~~--~~~~~e~~~~l~---~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~--~~~~ 259 (340) .+..-....... .+..++. ++ ..+.......+. +.++.++ +|.| ++++.. +.-+|...+ .+. T Consensus 309 rT~~~v~~Li~~-~~v~~lk--~dla~~L~~g~~~~l~~R~eli~~~R--sn~G-~~llDk----~~Eefeq~stslSG- 377 (695) T protein:vir:78 309 RTRQSVSDIVKQ-FSVSGIL--MDLAQALMPGANVDLSMRAELINRYR--DNRN-ILFLDK----ATEEFFQFNTPLSG- 377 (695) T ss_pred HHHhHHHHHHHh-hhhHHHH--HHHHHhhcChhHHHHHHHHHHHHHhc--Cccc-eEEEec----CCcceEEEecccCC- Confidence 555555554433 2222221 11 011111222222 2223333 3443 444441 122344443 333 Q ss_pred HHHHHHHHHhhHHHHHHHhcCCHHHc-cccccccccc-ccHHHHHHHHH-------HHHHHHHHHHHHHH-HHh-hC--- Q lcl|Aclame:pro 260 KDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSL-GDVEKVAKVFV-------RNELSPLQDRFREV-NDW-LG--- 325 (340) Q Consensus 260 d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~-~n~e~~~~~f~-------~~~l~P~~~~ie~l-n~~-l~--- 325 (340) +-++.....+.||++-+||...| |..+. ++ ++-|.-.+.|+ +..|+|.++++-++ -.- +| T Consensus 378 ---LddVi~qf~q~VAgaa~IPltkLfGqSPk---GlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~id 451 (695) T protein:vir:78 378 ---LDALQAQAQEQMSAVSHIPLIKLLGITPT---GLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD 451 (695) T ss_pred ---HHHHHHHHHHHHHhhhcCchhhhhccCCc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC Confidence 23444456689999999999765 55443 23 44566666666 34677777765442 222 22 Q ss_pred ccc-eeecc-cccCCCC Q lcl|Aclame:pro 326 MEV-IRFKE-YTLDNPE 340 (340) Q Consensus 326 ~~~-~rf~~-~~l~~~~ 340 (340) +++ +.|++ +.+++.| T Consensus 452 pdi~~~fnPL~qmtd~E 468 (695) T protein:vir:78 452 PSIKWQWNALRELDDLE 468 (695) T ss_pred CcceEEeCCCCCcCHHH Confidence 221 34543 3444444 No 162 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=88.15 E-value=0.034 Score=28.63 Aligned_cols=269 Identities=10% Similarity=0.022 Sum_probs=104.1 Q ss_pred CCCCCCCcc-cccccCCcc-------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPRKA-VAMTASAPQ-------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~~~-~~~~~~~~~-------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) +.++++... .......+- ....|.||+|..+ T Consensus 60 ~~r~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~----------------------------------- 104 (474) T protein:vir:95 60 VKQMKKVDVYGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTY----------------------------------- 104 (474) T ss_pred hccccccccccccccccccceeccchHHHHHHHHHhhhccCCcee----------------------------------- Confidence 211111000 000000000 0001222222111 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c---- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S---- 138 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~---- 138 (340) ++-.......+..+..|. .......++.+.+.+|.+|..+.++..|++ .+..++|..+-+..+. . T Consensus 105 ----~~~d~~~~~~l~~~~~n~--~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 177 (474) T protein:vir:95 105 ----SCEDESVLKIIHDVLDTR--WDNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKEREELKSF 177 (474) T ss_pred ----ccCchHHHHHHHHHHhcc--HHHHHHHHHHHHhhcCcEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 011111122222222222 123345667889999999999999888864 4555666544332211 1 Q ss_pred -eEEEEeCCceEEEEcccc-----------------------------------EEEecCCCCCCCcccccchhhhHHHH Q lcl|Aclame:pro 139 -VFWFVENFTQPHEFAPDT-----------------------------------VFHLLEPDINQEIYGLPEYLSALNSA 182 (340) Q Consensus 139 -~~y~~~~~~~~~~~~~~d-----------------------------------vih~r~~~~~~~~~G~sp~~~a~~~i 182 (340) ++|..........+.++. |++++. ...|.|.+......+ T Consensus 178 i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n-----n~~g~sd~e~v~~li 252 (474) T protein:vir:95 178 IRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKN-----NPEEVSDIWMYKSLI 252 (474) T ss_pred EEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecC-----CCCCCCcHHHHHHHH Confidence 111111111111122222 333321 234777776666655 Q ss_pred HHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHH Q lcl|Aclame:pro 183 WLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDD 262 (340) Q Consensus 183 ~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~q 262 (340) ..-..+..-..+.++..+.|-.++ ++...++ ........ ...+++.+.+++ ++++. ........ T Consensus 253 Da~d~~~S~~~~~~~~~~~p~lv~--~g~~~~~--~~~~~~~~-------~~~~~i~~~~~~---~~~~l--~~~~~~~~ 316 (474) T protein:vir:95 253 DAIDKRLSDAQNMFDESVELIYIL--KGYEGQD--LEEFMRGL-------KYYKAINVDGDG---GVETI--QVEVPVSS 316 (474) T ss_pred HHHHHHHHHHHHHHHHhcCceeee--ecCCccc--chhhhhhh-------hccceeeccCCC---ceeEE--eecCCHHH Confidence 554433333344445555665554 4433221 11111111 112344343332 33433 33334556 Q ss_pred HHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCccc- Q lcl|Aclame:pro 263 FFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK-------------VFVRNELSPLQDRFREVNDWLGMEV- 328 (340) Q Consensus 263 f~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~l~~~~- 328 (340) +.+..+...+.|+..-++|..--+-. +++ .+..+... ..+...|.-+++.| ...+|... T Consensus 317 ~~~~~~~l~~~i~~~s~~p~~~~~~~---~~n-~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li---~~~~g~~~d 389 (474) T protein:vir:95 317 TKEYIDLMRAYIMEFGQGVDFQTDKF---GSA-PSGIALKFLYGNLDLKANKLKNKATVAIQELIGFI---IDFNNLKMD 389 (474) T ss_pred HHHHHHHHHHHHHHHhCCcccccccc---ccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCcc Confidence 77777888899999999986321111 111 11111111 11122222222222 22233221 Q ss_pred -----eeecccccCCCC Q lcl|Aclame:pro 329 -----IRFKEYTLDNPE 340 (340) Q Consensus 329 -----~rf~~~~l~~~~ 340 (340) +.|++. +...+ T Consensus 390 ~~~i~v~f~~~-~p~d~ 405 (474) T protein:vir:95 390 VKDIEISFNFN-RMMND 405 (474) T ss_pred cceeeEEeccC-CCcCH Confidence 234321 11112 No 163 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=87.40 E-value=0.039 Score=28.31 Aligned_cols=297 Identities=11% Similarity=0.058 Sum_probs=105.4 Q ss_pred CCCCCCCc----cc-cccc---CCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRK----AV-AMTA---SAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~----~~-~~~~---~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) +++++++- .. .... ..+.. ...=+.+.+.....-+ . ..|...-|+.. +..+-.++-...+ T Consensus 56 ~~~~~~r~~~l~~YY~g~~~i~~~~~~--~~~~~~~~~~~~~~ri------~--~n~~k~Ivd~~--~~yl~g~p~~~~~ 123 (492) T protein:vir:97 56 HLEKLPEISIGQEYYEQRPDIVKEPKP--VDATGAVDPLKPDDRM------I--TNFHANLVDQK--VSYIVGKPIAFKH 123 (492) T ss_pred HHHHHHHHHHHHHHhcccCcccccccc--cccccccccccccccc------c--cchHHHHHHHH--hhhhcccCceecc Confidence 11111000 00 0000 00000 0000000000000000 0 00110001100 0000000000011 Q ss_pred hhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEE Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFV 143 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~ 143 (340) -.......+..+..|.+ ......++.+.+.+|.||..+..+..|++ .+..++|..+-+..+. . ++|.. T Consensus 124 ~d~~~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~i~d~~~~~~~~~~vr~~~~ 200 (492) T protein:vir:97 124 TDDEVVKRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKL 200 (492) T ss_pred CchHHHHHHHHHHhccH--HHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEee Confidence 11112222222222321 23344567889999999999999988874 4666777655433221 1 11211 Q ss_pred eCCceEEEEcccc-----------------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHH Q lcl|Aclame:pro 144 ENFTQPHEFAPDT-----------------------------------VFHLLEPDINQEIYGLPEYLSALNSAWLNESA 188 (340) Q Consensus 144 ~~~~~~~~~~~~d-----------------------------------vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa 188 (340) ........+.++. |++++. ...|.|.+......++.-..+ T Consensus 201 ~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~ 275 (492) T protein:vir:97 201 ENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN-----NDLEISDIFMYKTLIDAYNRR 275 (492) T ss_pred ccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC-----CCCCCCchHhHHHHHHHHHHH Confidence 1111111112222 222221 124777777666666555544 Q ss_pred HHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHH Q lcl|Aclame:pro 189 TLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKK 268 (340) Q Consensus 189 ~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~ 268 (340) ..-..+.+...+.|-.++. +. +.++....+..++.. +++.+..++ ++++. .-......+.+..+ T Consensus 276 ~S~~~~~~~~~~~~~l~~~--g~--~~~~~~~~~~~~~~~-------~~~~~~~~~---~~~~l--~~~~~~~~~~~~~~ 339 (492) T protein:vir:97 276 LSDLSNTFKDSNELTYVLK--NY--DDQELPEFKRLLRYY-------GAIKVSDNG---GVDTI--QVEVPVENSKKYLD 339 (492) T ss_pred HHHHHHHHHHhccceeeee--cC--CcccchhHHHHHhhc-------cceecCCCC---cceeE--eccCCHHHHHHHHH Confidence 4444555555566655553 32 122222222222211 223333322 34443 22234556777778 Q ss_pred hhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH--------HHHH----HHhhCccc------ee Q lcl|Aclame:pro 269 ASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR--------FREV----NDWLGMEV------IR 330 (340) Q Consensus 269 ~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ie~l----n~~l~~~~------~r 330 (340) .-.+.|+..-++|....+-.. +|.......+....+.-.+.. ++++ ...++... +. T Consensus 340 ~L~~~I~~~s~~p~~~~~~~~------~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~ 413 (492) T protein:vir:97 340 ELYQKIMLFGQAVDFSSDKFG------SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDIS 413 (492) T ss_pred HHHHHHHHHhCCCCCCccccc------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEE Confidence 888999999999864332111 111111121221111111111 1111 11222110 33 Q ss_pred ecccccCCCC Q lcl|Aclame:pro 331 FKEYTLDNPE 340 (340) Q Consensus 331 f~~~~l~~~~ 340 (340) |.+ .+...+ T Consensus 414 f~~-~~p~~~ 422 (492) T protein:vir:97 414 FNY-NKVANT 422 (492) T ss_pred ecC-CCCCCH Confidence 432 122212 No 164 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=87.40 E-value=0.039 Score=28.31 Aligned_cols=284 Identities=9% Similarity=0.001 Sum_probs=104.6 Q ss_pred CCCCCCCcccccccCC---cc----ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASA---PQ----KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~---~~----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) ..++.+.+.++...-. +. ....|.||+|.. . .+- T Consensus 50 ~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~-------------------------~--------------~~~ 90 (453) T protein:vir:73 50 SSQKAKDSWKPDNRLTNNFAKYIVDTFVGYFNGIPIK-------------------------K--------------THD 90 (453) T ss_pred hcCCCCCccCccceeecchHHHHHHHhhhhhcccCce-------------------------e--------------ecC Confidence 1111110000000000 00 000111121111 0 001 Q ss_pred hhhhhhHHHhh-hccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc--------eEEEEe Q lcl|Aclame:pro 74 YVKRNVLASTY-IPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--------VFWFVE 144 (340) Q Consensus 74 ~~k~n~~~~~~-~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~--------~~y~~~ 144 (340) ....+..+..+ .-|. .......++.+.+.+|.||+.+.++..|.+ .+..++|..+-+..+.. .+|... T Consensus 91 d~~~~~~l~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~dd~~~~~~~~~i~~~~~ 167 (453) T protein:vir:73 91 DKSVLEAMQLFDNLND--MEDEESELAKIACVYGRAYELMYQNESTES-EVIYCSPLNVFMVYDDSIKQKPLFAVYYGFD 167 (453) T ss_pred ChHHHHHHHHHHHhcC--hhHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEeCCCCceeEEEEEEEEe Confidence 11111122111 1121 122345677889999999999999888875 45556665543221111 011111 Q ss_pred CCceE--EEEccccEEEecCCC-----------C---------CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCC Q lcl|Aclame:pro 145 NFTQP--HEFAPDTVFHLLEPD-----------I---------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHA 202 (340) Q Consensus 145 ~~~~~--~~~~~~dvih~r~~~-----------~---------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p 202 (340) .++.. ..+.++.|+++..-. + .+...|.|.+......++....+..-.....+..+.| T Consensus 168 ~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~ 247 (453) T protein:vir:73 168 EEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQ 247 (453) T ss_pred cCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhccc Confidence 11111 112222222221100 0 0122466777665555544333333233333344445 Q ss_pred ceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCH Q lcl|Aclame:pro 203 GYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPF 282 (340) Q Consensus 203 ~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp 282 (340) -.++ ++..++++....++..--........+.. +....+.++..+.-...+..+.+..+...+.|+..-++|. T Consensus 248 ~l~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 320 (453) T protein:vir:73 248 YLVF--LGAEVDEEDAKNIKDNRLINFFDKNSNGQ-----GTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAAN 320 (453) T ss_pred eeee--ecCCCCchhhhcccccccccccccccccc-----cccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 5554 45555655555544321100001111111 1112233343333334455667777888899999989985 Q ss_pred HHcccccccccccccHHHHHH---------------HHHHHHHHHHHHHHHHHHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 283 QLMGGKPENIGSLGDVEKVAK---------------VFVRNELSPLQDRFREVNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 283 ~~lG~~~~~~~~~~n~e~~~~---------------~f~~~~l~P~~~~ie~ln~~l~~~------~~rf~~~~l~~~~ 340 (340) . +. .+ ++|...... ..+...|.-.++.+.++....+.. -+.|.+..-.+.. T Consensus 321 ~--~~--~~---~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~ 392 (453) T protein:vir:73 321 I--SD--EN---FGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEYTFTRNEPKDIK 392 (453) T ss_pred c--Cc--cc---ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHH Confidence 2 21 11 122222111 122222333322222221111111 0234322111111 No 165 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=86.48 E-value=0.045 Score=27.95 Aligned_cols=289 Identities=13% Similarity=0.050 Sum_probs=105.3 Q ss_pred CCCCCCCcccccccCCcc--------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQ--------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~--------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) ..++.++........... ....|.||+|..+... +. ..+...... T Consensus 74 ~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~----------~~-----------------~~~~~~~~~ 126 (501) T protein:vir:96 74 LKSGRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYD----------DN-----------------DDNSQNDDA 126 (501) T ss_pred cCccccCccccccceeecchHHHHHHHHhhhhcccCeeEeeC----------Cc-----------------cchhHHHHH Confidence 111100000000000000 0011222222211000 00 000000000 Q ss_pred hhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEE Q lcl|Aclame:pro 73 IYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFV 143 (340) Q Consensus 73 i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~ 143 (340) + -..+.-|.+ ......++.+.+.+|.||+.+.++..|++ .+..++|..+.+..+. . ++|.. T Consensus 127 l-------~~~~~~n~~--~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~v~d~~~~~~~~~~v~~~~~ 196 (501) T protein:vir:96 127 I-------KRIGRINDL--DSLNRTLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAAVRYYNR 196 (501) T ss_pred H-------HHHHHhcCH--HHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEe Confidence 0 001111211 23456778889999999999999988864 4666666654433221 1 11221 Q ss_pred eCC-ce--EE-EEcccc------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 ENF-TQ--PH-EFAPDT------------------------VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKY 195 (340) Q Consensus 144 ~~~-~~--~~-~~~~~d------------------------vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~ 195 (340) ... +. .+ .+.++. |++++. ...|.|.+......++.-..+..-..+. T Consensus 197 ~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~~~s~~~~~ 271 (501) T protein:vir:96 197 GTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLN-----NIDGIGDYETELYLIDLYDSAESDTANH 271 (501) T ss_pred ecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecC-----CccCCCchhhhHHHHHHHHHHHHHHHHH Confidence 110 00 00 111222 344432 2257787777666666555444444555 Q ss_pred HHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 196 YQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLM 275 (340) Q Consensus 196 f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~ 275 (340) +...+.|-.++.-......++....++.... ......+.. .+...+.++..+.-......+.+..+.-.+.|. T Consensus 272 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~ 344 (501) T protein:vir:96 272 MSDMADAILAIYGDLALPKGMQASDMKRTRL--MQLKPPKSA-----DGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIH 344 (501) T ss_pred HHHhcCceeeeecccccCcccchhhhhhcCe--eeecccccc-----cccccCcceeeEeccCCHHHHHHHHHHHHHHHH Confidence 5555556555542111111222222221100 000000000 011223344444433444556777778889999 Q ss_pred HHhcCCHHHcccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCc-------cc-eeecccccC Q lcl|Aclame:pro 276 DAHRVPFQLMGGKPENIGSLGDVEK----------VAKVFVRNELSPLQDRFREVNDWLGM-------EV-IRFKEYTLD 337 (340) Q Consensus 276 ~~f~VPp~~lG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~l~~-------~~-~rf~~~~l~ 337 (340) ..-++|....+-...+. +...++. ..+..+...|+-+++.+..+-...+. ++ +.|.+.. . T Consensus 345 ~~s~~p~~~~~~~~~n~-Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~-p 422 (501) T protein:vir:96 345 IFTNTPDMSDTNFSGNT-SGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNL-P 422 (501) T ss_pred HHhCCcccCcccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCC-C Confidence 99999975544221111 1110110 01112222222222222211111111 00 2333211 1 Q ss_pred CCC Q lcl|Aclame:pro 338 NPE 340 (340) Q Consensus 338 ~~~ 340 (340) ..+ T Consensus 423 ~n~ 425 (501) T protein:vir:96 423 KSL 425 (501) T ss_pred cCH Confidence 111 No 166 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=86.05 E-value=0.048 Score=27.80 Aligned_cols=272 Identities=11% Similarity=0.063 Sum_probs=101.5 Q ss_pred CCCCCCCccc-ccccC-Ccc------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPRKAV-AMTAS-APQ------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~~~~-~~~~~-~~~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) +.++.+.... ..... +.. ....|.||.|. .+. T Consensus 60 ~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~-------------------------~~~--------- 105 (474) T protein:vir:96 60 NYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPV-------------------------TYA--------- 105 (474) T ss_pred ccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCc-------------------------eec--------- Confidence 2221110000 00000 000 00112223222 211 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-------- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-------- 138 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 138 (340) +-..+....+..+..|. .......++.+.+.+|.||..+.++..|++ .+..++|..+-+..+.. T Consensus 106 -----~~~~~~~~~l~~~~~n~--~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ 177 (474) T protein:vir:96 106 -----HDDDKVLDVIHQVLDTR--WDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAF 177 (474) T ss_pred -----cCChHHHHHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 11111222222222221 123345677889999999999999888864 56666665544332211 Q ss_pred -eEEEEeCCceEEEEccccEEEecCCC---------------------C---------CCCcccccchhhhHHHHHHHHH Q lcl|Aclame:pro 139 -VFWFVENFTQPHEFAPDTVFHLLEPD---------------------I---------NQEIYGLPEYLSALNSAWLNES 187 (340) Q Consensus 139 -~~y~~~~~~~~~~~~~~dvih~r~~~---------------------~---------~~~~~G~sp~~~a~~~i~~~~a 187 (340) ++|..........+.++.|.++..-+ + .+...|.|.+......++.-.. T Consensus 178 ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~ 257 (474) T protein:vir:96 178 IRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDK 257 (474) T ss_pred EEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHH Confidence 11111110111112222222221000 0 0123466766665555554333 Q ss_pred HHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHH Q lcl|Aclame:pro 188 ATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIK 267 (340) Q Consensus 188 a~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~ 267 (340) +..-..+.++..+.|-.++ ++...+ +.......++ ..+++.+..+ .+++|.. -......+.+.. T Consensus 258 ~~S~~~~~~~~~~~p~lv~--~g~~~~--~~~~~~~~~~-------~~~~i~~~~~---~~~~~l~--~~~~~~~~~~~~ 321 (474) T protein:vir:96 258 RLSDVQNMFDESVELIYIL--RGYEGE--DLSEFMEGLK-------YYKAINVSSD---GGVETIQ--VEVPVASTKEYL 321 (474) T ss_pred HHHHHHHHHHHhhcchhhh--cCCCcc--cccchhhhhh-------ccceeeccCC---CceeEEe--ccCCHHHHHHHH Confidence 3333333344444454444 442221 1112222221 1233333332 2344433 233455567777 Q ss_pred HhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhCccc---- Q lcl|Aclame:pro 268 KASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV---------------FVRNELSPLQDRFREVNDWLGMEV---- 328 (340) Q Consensus 268 ~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~---------------f~~~~l~P~~~~ie~ln~~l~~~~---- 328 (340) +.-.+.|...-++|....+ +.+ +|....... .+...|.-+++.+ ...+|... T Consensus 322 ~~l~~~I~~~s~~p~~~~~----~~~--~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i---~~~~g~~~d~~~ 392 (474) T protein:vir:96 322 DMMRAYIVEFGQGVDFQTD----KFG--SATSGIALKFLYTNLNLKANKLKNKANVALQELMQFI---LDFNKIKLDAKE 392 (474) T ss_pred HHHHHHHHHHhCCcCcccc----ccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCcccce Confidence 7788899999999864321 111 111111111 1112222222211 22223211 Q ss_pred --eeecccccCCCC Q lcl|Aclame:pro 329 --IRFKEYTLDNPE 340 (340) Q Consensus 329 --~rf~~~~l~~~~ 340 (340) +.|.+ .+...+ T Consensus 393 i~i~f~~-~~p~~~ 405 (474) T protein:vir:96 393 IEITFNF-NVMVND 405 (474) T ss_pred eeEEecC-CCccCH Confidence 23332 111111 No 167 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=86.05 E-value=0.048 Score=27.80 Aligned_cols=272 Identities=11% Similarity=0.063 Sum_probs=101.5 Q ss_pred CCCCCCCccc-ccccC-Ccc------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPRKAV-AMTAS-APQ------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~~~~-~~~~~-~~~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) +.++.+.... ..... +.. ....|.||.|. .+. T Consensus 60 ~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~-------------------------~~~--------- 105 (474) T protein:vir:95 60 NYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPV-------------------------TYA--------- 105 (474) T ss_pred ccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCc-------------------------eec--------- Confidence 2221110000 00000 000 00112223222 211 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-------- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-------- 138 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 138 (340) +-..+....+..+..|. .......++.+.+.+|.||..+.++..|++ .+..++|..+-+..+.. T Consensus 106 -----~~~~~~~~~l~~~~~n~--~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ 177 (474) T protein:vir:95 106 -----HDDDKVLDVIHQVLDTR--WDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAF 177 (474) T ss_pred -----cCChHHHHHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 11111222222222221 123345677889999999999999888864 56666665544332211 Q ss_pred -eEEEEeCCceEEEEccccEEEecCCC---------------------C---------CCCcccccchhhhHHHHHHHHH Q lcl|Aclame:pro 139 -VFWFVENFTQPHEFAPDTVFHLLEPD---------------------I---------NQEIYGLPEYLSALNSAWLNES 187 (340) Q Consensus 139 -~~y~~~~~~~~~~~~~~dvih~r~~~---------------------~---------~~~~~G~sp~~~a~~~i~~~~a 187 (340) ++|..........+.++.|.++..-+ + .+...|.|.+......++.-.. T Consensus 178 ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~ 257 (474) T protein:vir:95 178 IRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDK 257 (474) T ss_pred EEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHH Confidence 11111110111112222222221000 0 0123466766665555554333 Q ss_pred HHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHH Q lcl|Aclame:pro 188 ATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIK 267 (340) Q Consensus 188 a~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~ 267 (340) +..-..+.++..+.|-.++ ++...+ +.......++ ..+++.+..+ .+++|.. -......+.+.. T Consensus 258 ~~S~~~~~~~~~~~p~lv~--~g~~~~--~~~~~~~~~~-------~~~~i~~~~~---~~~~~l~--~~~~~~~~~~~~ 321 (474) T protein:vir:95 258 RLSDVQNMFDESVELIYIL--RGYEGE--DLSEFMEGLK-------YYKAINVSSD---GGVETIQ--VEVPVASTKEYL 321 (474) T ss_pred HHHHHHHHHHHhhcchhhh--cCCCcc--cccchhhhhh-------ccceeeccCC---CceeEEe--ccCCHHHHHHHH Confidence 3333333344444454444 442221 1112222221 1233333332 2344433 233455567777 Q ss_pred HhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH---------------HHHHHHHHHHHHHHHHHHhhCccc---- Q lcl|Aclame:pro 268 KASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV---------------FVRNELSPLQDRFREVNDWLGMEV---- 328 (340) Q Consensus 268 ~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~---------------f~~~~l~P~~~~ie~ln~~l~~~~---- 328 (340) +.-.+.|...-++|....+ +.+ +|....... .+...|.-+++.+ ...+|... T Consensus 322 ~~l~~~I~~~s~~p~~~~~----~~~--~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i---~~~~g~~~d~~~ 392 (474) T protein:vir:95 322 DMMRAYIVEFGQGVDFQTD----KFG--SATSGIALKFLYTNLNLKANKLKNKANVALQELMQFI---LDFNKIKLDAKE 392 (474) T ss_pred HHHHHHHHHHhCCcCcccc----ccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCCcccce Confidence 7788899999999864321 111 111111111 1112222222211 22223211 Q ss_pred --eeecccccCCCC Q lcl|Aclame:pro 329 --IRFKEYTLDNPE 340 (340) Q Consensus 329 --~rf~~~~l~~~~ 340 (340) +.|.+ .+...+ T Consensus 393 i~i~f~~-~~p~~~ 405 (474) T protein:vir:95 393 IEITFNF-NVMVND 405 (474) T ss_pred eeEEecC-CCccCH Confidence 23332 111111 No 168 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=85.49 E-value=0.052 Score=27.60 Aligned_cols=314 Identities=10% Similarity=0.044 Sum_probs=101.2 Q ss_pred CCCCCCCccccccc-CCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTA-SAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNV 79 (340) Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~ 79 (340) ..+++++-.....= .+...+.-..-.-|.. + ++. .+. -.|...-|+. ++..+..+++.... ..+.+. T Consensus 25 ~~~~~~r~~~~~~YY~G~~~i~~~~~~~~~~-~--~~~----~~~--~n~~~~ivd~--~~~~l~~~g~~~~~-~~~~~~ 92 (485) T protein:vir:24 25 FEDQNQNLRSNTSYYEAERRPEAIGVTVPVQ-M--QSL----LAH--VGYPRLYVDS--IAERQAVEGFRLGD-ADEADE 92 (485) T ss_pred HHHHHHHHHHHHHHHhccCchhhcCcccchh-h--hhh----hhc--cchHHHHHHH--HhhhhccCceecCC-CchhHH Confidence 00000000000000 0000000000000000 0 000 000 0011111110 01111111111000 000111 Q ss_pred -HHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCcee-------EEEEEecCcceeecccCc-----e------- Q lcl|Aclame:pro 80 -LASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQL-------IKLLTSPAKYTRRGVDDS-----V------- 139 (340) Q Consensus 80 -~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~-------~~L~pl~~~~~~~~~~~~-----~------- 139 (340) +-..+.-|.+ ......++.+.+.+|.||+.+.++..+.. ..+.+++|..+.+..+.. . T Consensus 93 ~l~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~~~~~~~~~~~~~ 170 (485) T protein:vir:24 93 ELWQWWQANNL--DIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIGRPAKAIRVAYD 170 (485) T ss_pred HHHHHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCcCceeEEEEEEEe Confidence 1111222211 23456778899999999999988765432 256777776543322211 0 Q ss_pred -----------------EEEEeCCceEE-------EEccccEEEecCCCCCCCcccccchhh-hHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 140 -----------------FWFVENFTQPH-------EFAPDTVFHLLEPDINQEIYGLPEYLS-ALNSAWLNESATLFRRK 194 (340) Q Consensus 140 -----------------~y~~~~~~~~~-------~~~~~dvih~r~~~~~~~~~G~sp~~~-a~~~i~~~~aa~~~~~~ 194 (340) ++.+..++... .+..=.|+||++..-.++.+|.|.+.- ....++....+..-... T Consensus 171 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~ 250 (485) T protein:vir:24 171 AEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQA 250 (485) T ss_pred ecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHHHHHHHHHH Confidence 01111111110 011113567764433456788887653 22222222222111112 Q ss_pred HHHccCCCceEEEeCCCCcCHHHHH--HHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHH Q lcl|Aclame:pro 195 YYQNGAHAGYIMYVTDPAQSATDVE--SLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAA 272 (340) Q Consensus 195 ~f~NG~~p~gil~~~~~~~~~e~~~--~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~ 272 (340) .....+.|--++. +..++....+ .-...|+.. .+.++++. + .+.++..+...+-+ .|++..+.... T Consensus 251 ~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~-~---~~~~~~q~~~~~~e-~~~~~l~~~i~ 318 (485) T protein:vir:24 251 TAELMGVPQRLIF--GIKPEEIGVDPETGQTLFDAY-----LARILAFE-D---AEGKIQQFSAAELA-NFTNALDQIAK 318 (485) T ss_pred HHHhhcchhhhhc--cCCccccccccccccchhhhc-----ccceeccC-C---CCceEEeecccchH-HHHHHHHHHHH Confidence 2222334444442 2111111100 001112211 12333332 1 23455554433222 37777777778 Q ss_pred HHHHHhcCCHHHcccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhhCcc------ceeeccccc Q lcl|Aclame:pro 273 DLMDAHRVPFQLMGGKPENIGSLGDVEKVA----------KVFVRNELSPLQDRFREVNDWLGME------VIRFKEYTL 336 (340) Q Consensus 273 ~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ie~ln~~l~~~------~~rf~~~~l 336 (340) +++..=++|+..+|....+.++..-+.... +..+...|+-.+..+..+....+.. .+.|.+-.. T Consensus 319 ~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~f~~~~~ 398 (485) T protein:vir:24 319 QVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRMETVWRDPST 398 (485) T ss_pred HHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeEEecCCCC Confidence 888888999999885433212111111111 1111112222221111111100000 012221110 Q ss_pred CCC-C Q lcl|Aclame:pro 337 DNP-E 340 (340) Q Consensus 337 ~~~-~ 340 (340) .+. + T Consensus 399 ~s~~~ 403 (485) T protein:vir:24 399 PTYAA 403 (485) T ss_pred CCHHH Confidence 000 0 No 169 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=85.35 E-value=0.053 Score=27.56 Aligned_cols=287 Identities=14% Similarity=0.115 Sum_probs=103.7 Q ss_pred CCCCCCCcccc-cccCCc-cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVA-MTASAP-QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~-~~~~~~-~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) +.++++.-... .....+ .++ +.+|. -.+.+ ...+|+ +--|+.. .+-..... T Consensus 77 ~~~~~~~~~~~~~~~~~~~~ri-~~n~~--k~Ivd--~~~~yl--------~G~p~~~--------------~~~d~~~~ 129 (492) T protein:vir:94 77 VKEPKPVDATGAVDPLKPDDRM-ITNFH--ANLVD--QKVSYI--------VGKPIAF--------------KHTDDEVV 129 (492) T ss_pred cccccccccccccccccccccc-ccchH--HHHHH--HHHhhh--------cccCcee--------------ccCchHHH Confidence 22221100000 000000 000 00000 00000 000110 1111111 01111122 Q ss_pred hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeCCceE Q lcl|Aclame:pro 79 VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVENFTQP 149 (340) Q Consensus 79 ~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~~~~~ 149 (340) ..+..+..|. .......++.+.+.+|.+|..+..+.+|++ .+..++|..+.+..+. . ++|........ T Consensus 130 ~~l~~~~~n~--~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~v~d~~~~~~~~a~ir~~~~~~~~~~ 206 (492) T protein:vir:94 130 KRIDEVLGNR--FDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKV 206 (492) T ss_pred HHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEeeccceeE Confidence 2222222232 123345677889999999999999888874 4666777654433221 1 11211111111 Q ss_pred EEEccccEEEecC---------------------CCCC---------CCcccccchhhhHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 150 HEFAPDTVFHLLE---------------------PDIN---------QEIYGLPEYLSALNSAWLNESATLFRRKYYQNG 199 (340) Q Consensus 150 ~~~~~~dvih~r~---------------------~~~~---------~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG 199 (340) ..+.+..|.++.. +++. +.-.|.|.+......++.-..+..-..+.++.. T Consensus 207 ~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~ 286 (492) T protein:vir:94 207 EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDS 286 (492) T ss_pred EEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh Confidence 1111222221110 0000 112477777766666665555544445556666 Q ss_pred CCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhc Q lcl|Aclame:pro 200 AHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHR 279 (340) Q Consensus 200 ~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~ 279 (340) +.|-.++. +. +.++....+..++. .+++.+..++ ++++.. -......+.+..+.-.+.|+..-+ T Consensus 287 ~~p~lv~~--g~--~~~~~~~~~~~~~~-------~~~~~~~~~~---~~~~l~--~~~~~~~~~~~~~~l~~~I~~~s~ 350 (492) T protein:vir:94 287 NELTYVLK--NY--DDQELPEFKRLLRY-------YGAIKVSDNG---GVDTIQ--VEVPVENSKKYLDELYQKIMLFGQ 350 (492) T ss_pred cCceeeee--cC--CcccchhhHHHHhh-------ccceecCCCC---cceeEe--ccCCHHHHHHHHHHHHHHHHHHhC Confidence 66766653 31 12222222222221 1223333322 334422 222334456666777888999888 Q ss_pred CCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHH--------HH----HHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 280 VPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRF--------RE----VNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 280 VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~i--------e~----ln~~l~~~------~~rf~~~~l~~~~ 340 (340) +|..-.+-.. +|.......+....+.-.+... ++ +...++.. .+.|.+ .+...+ T Consensus 351 ~p~~~~~~~~------~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~i~v~f~~-~~p~~~ 422 (492) T protein:vir:94 351 AVDFSSDKFG------SAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHKDVDISFNY-NKVANT 422 (492) T ss_pred CcCCCccccc------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeEEecC-CCCCCH Confidence 8853322111 1111111112211111111111 11 11122211 023321 122212 No 170 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=85.20 E-value=0.055 Score=27.51 Aligned_cols=286 Identities=12% Similarity=0.066 Sum_probs=103.7 Q ss_pred CCCCCCCccc-ccccCCc-cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV-AMTASAP-QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~-~~~~~~~-~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) +.++++.... ......+ .++ +.+|.. .+.+- ..+-.+--|+.+ .+-..... T Consensus 68 ~~~~~~~~~~~~~~~~~~~~ki-~~n~~k--------~Ivd~----~~~~l~G~p~~~--------------~~~d~~~~ 120 (483) T protein:vir:12 68 VKEPKPVDATGAVDPLKPDDRM-ITNFHA--------NLVDQ----KVSYIVGKPIAF--------------KHTDDEVV 120 (483) T ss_pred cccccccccccccccccccccc-ccchHH--------HHHHH----HhhhhcccCcee--------------ccCChHHH Confidence 2221110000 0000000 000 000000 00000 000001111111 11111222 Q ss_pred hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---------eEEEEeCCceE Q lcl|Aclame:pro 79 VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---------VFWFVENFTQP 149 (340) Q Consensus 79 ~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~y~~~~~~~~ 149 (340) ..+..+..|.+ ......++.+.+.+|.+|..+..+.+|++ .+..++|..+-+..+.. ++|........ T Consensus 121 ~~l~~~~~n~~--~~~~~~~~~~~~~~G~~y~~v~~d~d~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~~~~~~~ 197 (483) T protein:vir:12 121 KRIDEVLGNRF--DDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFIRMYKLENETKV 197 (483) T ss_pred HHHHHHHhccH--HHHHHHHHHHHhhCCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeecceEE Confidence 22222322321 23345567888999999999999988874 46667776654332211 11221111111 Q ss_pred EEEccccEEEecC---------------------CCC---------CCCcccccchhhhHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 150 HEFAPDTVFHLLE---------------------PDI---------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQNG 199 (340) Q Consensus 150 ~~~~~~dvih~r~---------------------~~~---------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG 199 (340) ..+.+..|.|+.. +++ .+...|.|.+......++.-..+..-..+.++.. T Consensus 198 ~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~ 277 (483) T protein:vir:12 198 EYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRRLSDLSNTFKDS 277 (483) T ss_pred EEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHh Confidence 1122222222110 000 0122477777666655554444444444444555 Q ss_pred CCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhc Q lcl|Aclame:pro 200 AHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHR 279 (340) Q Consensus 200 ~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~ 279 (340) +.|-.++. +... +.....+..++. .+++.+..++ ++++.. -......+.+..+.-.+.|+..-+ T Consensus 278 ~~~~lv~~--g~~~--~~~~~~~~~~~~-------~~~~~~~~~~---~~~~l~--~~~~~~~~~~~~~~l~~~I~~~s~ 341 (483) T protein:vir:12 278 NELTYVLT--NYDD--QELPEFKRLLRY-------YGAIKVSDNG---GVDTIQ--VEVPVENSKKYLDELYQKIMLFGQ 341 (483) T ss_pred cCceeeee--cCCc--ccchhHHHhhhh-------ccccccCCCC---cceEEe--ecCCHHHHHHHHHHHHHHHHHHhC Confidence 56655553 3221 111222222211 1223333322 344432 223455567777777889999999 Q ss_pred CCHHHcccccccccccccHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhCccc------eeecccccCCCC Q lcl|Aclame:pro 280 VPFQLMGGKPENIGSLGDVEKVA-------------KVFVRNELSPLQDRFREVNDWLGMEV------IRFKEYTLDNPE 340 (340) Q Consensus 280 VPp~~lG~~~~~~~~~~n~e~~~-------------~~f~~~~l~P~~~~ie~ln~~l~~~~------~rf~~~~l~~~~ 340 (340) +|....+-..+ + .+.+... +..+...++-+++.+. ..++... +.|.+ .+...+ T Consensus 342 ~p~~~~~~~~~---n-~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~---~~~~~~~~~~~i~v~f~~-~~p~~~ 413 (483) T protein:vir:12 342 AVDFSSDKFGS---A-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVF---EHFDIKGEHKDVDISFNY-NKVANT 413 (483) T ss_pred CCCCCcccccc---C-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCccceeeEEeCC-CCCCCH Confidence 98643321111 1 1111111 1111122222222221 2222111 33432 112212 No 171 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=85.01 E-value=0.056 Score=27.45 Aligned_cols=271 Identities=8% Similarity=0.041 Sum_probs=105.4 Q ss_pred CCCCCCCcccccccCCc-------cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAP-------QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~-------~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) .+++++....+...-.. .....|.||+|..+. +- T Consensus 34 l~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~---------------------------------------~~ 74 (429) T protein:vir:98 34 LQQKQKEQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQTS---------------------------------------HE 74 (429) T ss_pred ccccccccCCCcceeecchHHHHHHHHhhhhcccCceee---------------------------------------cC Confidence 22221111000000000 000012222221110 00 Q ss_pred hhhhhhHHH-hhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEE Q lcl|Aclame:pro 74 YVKRNVLAS-TYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFV 143 (340) Q Consensus 74 ~~k~n~~~~-~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~ 143 (340) ....+..+. .+.-|. .......++.+.+.+|.+|+.+..+.+|++ .+..++|..+.+..+. . ++|.. T Consensus 75 ~~~~~~~l~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~~~~~~p~~~~~v~dd~~~~~~~~~i~~~~~ 151 (429) T protein:vir:98 75 NKQVSNYLELLDGYND--QDDNNAELSKICSIYGHGYELVFNDENAEA-GITYLTPLEAFIVYDDSIRQKPLFAVRYFYN 151 (429) T ss_pred ChHHHHHHHHHHhhcC--HhHHHHHHHHHHhhcCeEEEEEEecCCCcE-EEEEEcccceEEEEeCCCCCceEEEEEEEEe Confidence 011111111 111121 123456677889999999999999888875 4556666554322111 0 01111 Q ss_pred eCC---------ceEEEEc-----------------cccEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 ENF---------TQPHEFA-----------------PDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 144 ~~~---------~~~~~~~-----------------~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) .+. ...+.+. .=.|++++. ...|.|.+......+.....+..-..+..+ T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liD~~d~~~s~~~~~~~ 226 (429) T protein:vir:98 152 KGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE-----NEERQSLLASVVTLINAFNKAISEKANDVE 226 (429) T ss_pred cCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEecC-----CCCCCCcHHHHHHHHHHHHHHHHHHHHHHH Confidence 000 0000110 002455432 235888887666666555554444444455 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccc-cCCccccccceeeccchhhHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFY-SPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMD 276 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl-~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~ 276 (340) ..+.|-.++ ++...+++....++. .+++.+ .++++..+++|. ........+.+..+...+.|+. T Consensus 227 ~~~~p~~~i--~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~l~~~i~~ 291 (429) T protein:vir:98 227 YFADAYLKI--LGAELDDETLKSLRD-----------TRIINLKDTDAQQLTVEFL--QKPDADATQEHLLDRLENLIFR 291 (429) T ss_pred HhcCceeee--ecCCCCcchhhhHhh-----------CceeeccCCCCCCcceeEE--eecCCHHHHHHHHHHHHHHHHH Confidence 566666665 444445443332211 122222 223333333433 3333444566677888999999 Q ss_pred HhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHH--------HHHH----HHHhhCccc---------eeecccc Q lcl|Aclame:pro 277 AHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQD--------RFRE----VNDWLGMEV---------IRFKEYT 335 (340) Q Consensus 277 ~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~--------~ie~----ln~~l~~~~---------~rf~~~~ 335 (340) .-++|..-. .+ ++|.......+....+.=.+. .+++ +...++... +.|.+.. T Consensus 292 ~s~~p~~~~----~~---~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~v~f~~~~ 364 (429) T protein:vir:98 292 TAMVANISD----ES---FGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKIGPKDWIGIKYKFTRNL 364 (429) T ss_pred HhCccccCc----cc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCC Confidence 999985321 11 122222222221111111111 1111 111221111 2232211 Q ss_pred cCCCC Q lcl|Aclame:pro 336 LDNPE 340 (340) Q Consensus 336 l~~~~ 340 (340) -.+.. T Consensus 365 p~~~~ 369 (429) T protein:vir:98 365 PANLL 369 (429) T ss_pred CcCHH Confidence 11111 No 172 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=84.55 E-value=0.06 Score=27.30 Aligned_cols=279 Identities=9% Similarity=0.001 Sum_probs=102.9 Q ss_pred CCCCCCCcccccccCC-------ccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASA-------PQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~-------~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) ..++.+...++...-. ......+.||+|..+. +- T Consensus 50 ~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~---------------------------------------~~ 90 (453) T protein:vir:39 50 DAEPTKDLWKPDNRLTVNFTKYIVDTFTGYFNGIPVKKS---------------------------------------HS 90 (453) T ss_pred hcCCCccccCccceeecchHHHHHHHHhhhhcccCceec---------------------------------------cC Confidence 1221111000000000 0000011122221110 00 Q ss_pred hhhhhhHHH-hhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc----e----EEEEe Q lcl|Aclame:pro 74 YVKRNVLAS-TYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS----V----FWFVE 144 (340) Q Consensus 74 ~~k~n~~~~-~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~----~----~y~~~ 144 (340) ....+..+. .+..|.+ ......++.+.+.+|.||+.+.++..|++ .+..++|..+....+.. . .|... T Consensus 91 d~~~~~~l~~i~~~N~~--~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~~~~ 167 (453) T protein:vir:39 91 DKETLSKLQEFDNLNDM--EDEESELAKMACIYGRAFELLYQNEETQT-NVIYNTPENMFMVYDDTIKQEPLFAVRYGYD 167 (453) T ss_pred ChHHHHHHHHHHHhcCh--hHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEecCCCCCeEEEEEEEEEe Confidence 001111111 1122211 23456678889999999999999988875 34455554443221110 0 01001 Q ss_pred CCceE--EEEccc-------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQP--HEFAPD-------------------------TVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 145 ~~~~~--~~~~~~-------------------------dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) .+... ..+.++ .|++++. .-.|.|.+......+.....+..-..+..+ T Consensus 168 ~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liDa~~~~~s~~~~~~~ 242 (453) T protein:vir:39 168 DDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYF-----NEERMSIFESVISLVNAFNKAISEKANDVD 242 (453) T ss_pred CCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecC-----CCCCCcchhhhHHHHHHHHHHHHHHHHHHH Confidence 11000 001111 2344432 125777776655555433333333333344 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDA 277 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~ 277 (340) ..+.|-.++ ++..++++....++... .+.+....+...+.++..+........+.+..+...+.|... T Consensus 243 ~~~~p~~~~--~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~ 310 (453) T protein:vir:39 243 YFSDQYLTF--LGAAVEEEDLKNIRSNR----------VINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQT 310 (453) T ss_pred HhhCceeee--ecCCCCchhhhhhhhcc----------eeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 455565555 44445555544433210 011100011111222333333334556677778888899998 Q ss_pred hcCCHHHcccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCcc------ceeecccccCCCC Q lcl|Aclame:pro 278 HRVPFQLMGGKPENIGSLGDVEK----------VAKVFVRNELSPLQDRFREVNDWLGME------VIRFKEYTLDNPE 340 (340) Q Consensus 278 f~VPp~~lG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~l~~~------~~rf~~~~l~~~~ 340 (340) -++|..-.+.. ++.+..-++. ..+..+...|...++.+.++....+.. -+.|.+..-.+.. T Consensus 311 s~~p~~~~~~~--gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~ 387 (453) T protein:vir:39 311 TMVANISDESF--GSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDIK 387 (453) T ss_pred hCCcccccccc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHH Confidence 88885322111 0111100111 111222333333333333322222211 1334332211111 No 173 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=82.46 E-value=0.077 Score=26.70 Aligned_cols=309 Identities=9% Similarity=0.029 Sum_probs=106.6 Q ss_pred CCCCCCCccc------ccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV------AMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIY 74 (340) Q Consensus 1 m~~~~~~~~~------~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~ 74 (340) |.+.+...-. .... .--.......++.....+..-.-..+- ..+...-|+.. +..+-.++-.-.+-. T Consensus 32 ~~~~~~~~~~~~~~yy~g~~-~i~~~~~~~~~~~~~~~~~~~~~~ki~----~~~~~~Ivd~~--~~~l~g~p~~~~~~~ 104 (479) T protein:vir:79 32 ILKHRPEKYKQGEEYYYGNT-DVNNKRRYYLLDGAKVDDFTKVNNKAI----NNYHKLLVDQK--VGYSVGNPIVFNADD 104 (479) T ss_pred HhhhhHHHHHHHHHHhccCC-cccccccccccccccccccccCcceee----cchHHHHHHHH--HhhhhcCCceeccCC Confidence 3322110000 0000 000000000010000000000000000 00000000000 000000110001111 Q ss_pred hhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---------eEEEEe- Q lcl|Aclame:pro 75 VKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---------VFWFVE- 144 (340) Q Consensus 75 ~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~y~~~- 144 (340) .+.......+..|. .......++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. ++|... T Consensus 105 ~~~~~~~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~y~~~~ 181 (479) T protein:vir:79 105 DNLTKLLNDLLGEE--FDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYIED 181 (479) T ss_pred HHHHHHHHHHHhcC--HHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEccceeEEEEeCCCCCceEEEEEEEEEee Confidence 22222222333331 223456677889999999999999888864 46666665543332110 122221 Q ss_pred CCceE----EEEccccEEEecCCC-----------------------------------C----CCCcccccchhhhHHH Q lcl|Aclame:pro 145 NFTQP----HEFAPDTVFHLLEPD-----------------------------------I----NQEIYGLPEYLSALNS 181 (340) Q Consensus 145 ~~~~~----~~~~~~dvih~r~~~-----------------------------------~----~~~~~G~sp~~~a~~~ 181 (340) ..++. ..+.++.|.|++.-+ | .+...|.|.+...... T Consensus 182 ~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~sd~~~v~~l 261 (479) T protein:vir:79 182 IDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYKSL 261 (479) T ss_pred cCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCCCCCCcchhhhHHH Confidence 11110 112222333221100 0 0122477777766666 Q ss_pred HHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHH Q lcl|Aclame:pro 182 AWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKD 261 (340) Q Consensus 182 i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~ 261 (340) +..-..+..-..+.++..+.|-.++.--++..+++....++ .++++.+.+++ ++++.... .... T Consensus 262 iDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~-----------~~~~i~~~~~~---~~~~l~~~--~~~~ 325 (479) T protein:vir:79 262 IDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNIR-----------YYKSIKVDGGG---GVDKLEIN--IPVE 325 (479) T ss_pred HHHHHHHHHHHHHHHHHhhCceeeeecCCccccccchhhhh-----------hccceecCCCC---cceEEecc--CCHH Confidence 65444444444445566666666654211112222111111 12333333332 34444332 3455 Q ss_pred HHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhCc-c Q lcl|Aclame:pro 262 DFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV-------------AKVFVRNELSPLQDRFREVNDWLGM-E 327 (340) Q Consensus 262 qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~-------------~~~f~~~~l~P~~~~ie~ln~~l~~-~ 327 (340) .+.+..+.-.+.|...-++|..-.+. .++-|. +.. .+..+...|.-+++.+.++-...+. + T Consensus 326 ~~~~~~~~l~~~i~~~s~~p~~~~~~----~gn~Sg-~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~ 400 (479) T protein:vir:79 326 AKKELLDRLEKNIIIFGQGVNPESQN----TGDKSG-VALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS 400 (479) T ss_pred HHHHHHHHHHHHHHHHhCcccccccc----ccchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc Confidence 56677777888898888888643321 111111 111 1111222222222222221111110 0 Q ss_pred ------ceeecccccCCCC Q lcl|Aclame:pro 328 ------VIRFKEYTLDNPE 340 (340) Q Consensus 328 ------~~rf~~~~l~~~~ 340 (340) -+.|.+..-.+.. T Consensus 401 ~~~~~i~i~f~~~~p~~~~ 419 (479) T protein:vir:79 401 YDYKTVQITFNHSMIINEA 419 (479) T ss_pred cccccceEEeCCCCCcCHH Confidence 0223321111100 No 174 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=80.14 E-value=0.098 Score=26.12 Aligned_cols=310 Identities=8% Similarity=0.002 Sum_probs=103.8 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheee-----eeecCchhh-------cccch-HHhhhhhhc-c Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVE-----CISNGKWYE-------PPVSF-SGLAKSLRS-A 66 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~-----~~~~~~~~~-------~pv~~-~~l~~~~r~-~ 66 (340) |- +..+. +++ ...+.+.- .-..++..+. +....+||+ .|+.. ..+. .++. . T Consensus 1 ~~--------~~~~~---~~~--gl~~~~~~-~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~~~~~~~~p~~~r-~~~~v~ 65 (474) T protein:vir:81 1 MI--------QQQTV---RIP--SLSNDENA-LINGLLAQIENLRWKNLLRTSYYENKRTIQYVGTLIPPQYF-NLGLVL 65 (474) T ss_pred Cc--------CCCcC---cCC--CCChhHHH-HHHHHHHHHHHHhhHHHHHHHHhccCCChhhccccccHHHH-HHHhhc Confidence 11 11111 111 11111100 0001111100 000111221 11111 0111 1110 1 Q ss_pred hhhhhhhhhhhhh-----------------HHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCcee-EEEEEecC Q lcl|Aclame:pro 67 VHHSSPIYVKRNV-----------------LASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQL-IKLLTSPA 128 (340) Q Consensus 67 ~~~~~~i~~k~n~-----------------~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~-~~L~pl~~ 128 (340) .+-.-++..-+.. +-..+.-|.+. ......+.+.+.+|.+|+.+..+..|.+ ..+.+++| T Consensus 66 nw~~~~Vd~~a~rl~~~Gf~~~d~~~~~~~l~~iw~~N~ld--~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp 143 (474) T protein:vir:81 66 GWTGKAVDALARRCNLEGFVWPDGDLDSLGGTEVVDDNHLL--SEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDA 143 (474) T ss_pred ChHHHHHHHHHhhhcccceECCCCCccchHHHHHHHhcChh--HHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEecc Confidence 1111111110000 00111111111 1223556688999999999998777764 55677777 Q ss_pred cceeecccCce------E--EEEeCCceE---EEEccc-------------------------cEEEecCCCCCCCcccc Q lcl|Aclame:pro 129 KYTRRGVDDSV------F--WFVENFTQP---HEFAPD-------------------------TVFHLLEPDINQEIYGL 172 (340) Q Consensus 129 ~~~~~~~~~~~------~--y~~~~~~~~---~~~~~~-------------------------dvih~r~~~~~~~~~G~ 172 (340) ..+....+... + +....+++. ..|.++ .|++|.+..-.++.+|. T Consensus 144 ~~~~~~~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~ 223 (474) T protein:vir:81 144 SEATGEWNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQ 223 (474) T ss_pred ceEEEEEeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCc Confidence 65543222110 0 011111110 011111 24555432223455777 Q ss_pred cch----hhhHHHHHHHHHHHHHHHHHHHccCCCceEEE-eCCCCcCH---HHHHHHHHHHHHh---cCccccccccccc Q lcl|Aclame:pro 173 PEY----LSALNSAWLNESATLFRRKYYQNGAHAGYIMY-VTDPAQSA---TDVESLRDAMRNS---KGLGNFKNLFFYS 241 (340) Q Consensus 173 sp~----~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~-~~~~~~~~---e~~~~l~~~~~~~---~g~~n~~~~~vl~ 241 (340) |.+ ..+..++.-...-..-...||.. |--++. +......+ +....++..+... -+.++...+- T Consensus 224 s~i~e~v~~l~da~~r~~~~~~~~~e~~a~---pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~--- 297 (474) T protein:vir:81 224 SRITKPMMGLQDAGVRELARREGHMDVFSY---PEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQ--- 297 (474) T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHhcc---hhheeecCChhhcccccccccchhhhhHHHHhcCCCcccccccc--- Confidence 754 23333333222222333444433 333331 11111111 1112233222221 1111111110 Q ss_pred CCccccccceeeccchhhHHH-HHHHHHhhHHHHHHHhcCCHHHcccccc-cccccccHHHHHHHHHHHHHHHHHHH--- Q lcl|Aclame:pro 242 PNGKPDGIKIVPLSEVATKDD-FFNIKKASAADLMDAHRVPFQLMGGKPE-NIGSLGDVEKVAKVFVRNELSPLQDR--- 316 (340) Q Consensus 242 ~~~~~~g~~~~pl~~~~~d~q-f~e~~~~~~~~I~~~f~VPp~~lG~~~~-~~~~~~n~e~~~~~f~~~~l~P~~~~--- 316 (340) ..+.++-.+.. .+++ |++..+.....||+.=++|++.+|+... +.++..-+..+...+... ..-.++. T Consensus 298 ----~~~~~~~q~~~--a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~k-ae~k~~~fg~ 370 (474) T protein:vir:81 298 ----LARADVKQFPA--ASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAE-AEGAVDDFTP 370 (474) T ss_pred ----cccccccccCC--CChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHH-HHHHHHHHHH Confidence 11234444432 3344 8999999999999999999999997532 212111121111111111 1111111 Q ss_pred -HHHHHHhh----Cc----c--------ceeecccccCCCC Q lcl|Aclame:pro 317 -FREVNDWL----GM----E--------VIRFKEYTLDNPE 340 (340) Q Consensus 317 -ie~ln~~l----~~----~--------~~rf~~~~l~~~~ 340 (340) ++++.+.. |. + -++|.+-...+.- T Consensus 371 ~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~~~s~a 411 (474) T protein:vir:81 371 ALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPRYLSKS 411 (474) T ss_pred HHHHHHHHHHHHhCCCCccccchhhccceeEecCCCccCHH Confidence 12222211 11 0 0122221111111 No 175 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=78.95 E-value=0.11 Score=25.86 Aligned_cols=277 Identities=10% Similarity=0.043 Sum_probs=102.2 Q ss_pred CCCCCCCcccccccC-----Ccc-----------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTAS-----APQ-----------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSG 58 (340) Q Consensus 1 m~~~~~~~~~~~~~~-----~~~-----------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~ 58 (340) |.++++......... ... ..-.|.||.|. .+ T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~-------------------------~~-- 90 (471) T protein:vir:10 38 KRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKKAYALTYPP-------------------------TF-- 90 (471) T ss_pred ccccchhhhhcccccccccccccccccceeccchhHHHHHhhhhhhcccCc-------------------------ee-- Confidence 433322110000000 000 00012222221 11 Q ss_pred hhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecC-CceeEEEEEecCcceeecccC Q lcl|Aclame:pro 59 LAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSV-TGQLIKLLTSPAKYTRRGVDD 137 (340) Q Consensus 59 l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~-~G~~~~L~pl~~~~~~~~~~~ 137 (340) .+-..+....+..+..|.+ ......++.+.+.+|.||..+.++. .|+ +.+..++|..+-+..+. T Consensus 91 ------------~~~~~~~~~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~g~-~~~~~~~p~~~~~i~d~ 155 (471) T protein:vir:10 91 ------------DVDDKKVNDMIVDVLGDDY--ERISKQLCVNAGNAGIAWLHVWKDASDNS-FRYACVDSKEVIPIYSK 155 (471) T ss_pred ------------ccCChHHHHHHHHHHhcCH--HHHHHHHHHHHhhCCeEEEEEEeeCCCCe-eEEEEEcccceEEEEcC Confidence 1112222233333322321 2234556788899999999998885 454 45666777655433221 Q ss_pred c---------eEEEEeC--CceE----EEEccccEEEecCCC-------------------------------CC----- Q lcl|Aclame:pro 138 S---------VFWFVEN--FTQP----HEFAPDTVFHLLEPD-------------------------------IN----- 166 (340) Q Consensus 138 ~---------~~y~~~~--~~~~----~~~~~~dvih~r~~~-------------------------------~~----- 166 (340) . ++|.... +++. ..+..+.+.|++..+ +. T Consensus 156 ~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPv 235 (471) T protein:vir:10 156 SLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPF 235 (471) T ss_pred CCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCceeE Confidence 1 1222211 1111 112233333332110 00 Q ss_pred ----CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCc--CHHHHHHHHHHHHHhcCcccccccccc Q lcl|Aclame:pro 167 ----QEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQ--SATDVESLRDAMRNSKGLGNFKNLFFY 240 (340) Q Consensus 167 ----~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~--~~e~~~~l~~~~~~~~g~~n~~~~~vl 240 (340) +...|.|.+......++.-..+..-..+.++.-+.|-.++ ++... .++... .+.. .+++.+ T Consensus 236 v~~~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~--~g~~~~~~~~~~~----~~~~-------~~~i~~ 302 (471) T protein:vir:10 236 IPFKNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVL--TNYGGQDKQEFLE----DLKR-------YKMIKM 302 (471) T ss_pred EEeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeee--ecCCccccchhHH----Hhhc-------CCeEEe Confidence 1124666666555555444433333344444444554444 34221 222111 1111 111222 Q ss_pred cCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHH--------H Q lcl|Aclame:pro 241 SPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELS--------P 312 (340) Q Consensus 241 ~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~--------P 312 (340) ...+...+.++..+........+.+..+.-.+.|...-++|..-.+ + ++|+......+.-..+. - T Consensus 303 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~----~---~gn~Sg~Alk~~~~~l~~k~~~~~~~ 375 (471) T protein:vir:10 303 DNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETD----K---LGNSSGVALKFLYSLLELKAGNMETQ 375 (471) T ss_pred cCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCcc----c---ccCccHHHHHHHHHHHHHHHHHHHHH Confidence 2111112223333333334455667777788899999999864221 1 12221111111111111 1 Q ss_pred HHHHHHHH----HHhhCcc-----ceeecccccCCCC Q lcl|Aclame:pro 313 LQDRFREV----NDWLGME-----VIRFKEYTLDNPE 340 (340) Q Consensus 313 ~~~~ie~l----n~~l~~~-----~~rf~~~~l~~~~ 340 (340) +-..|+++ ...++.. -+.|.+ .+...+ T Consensus 376 ~~~~l~~~~~li~~~~~~~d~~~i~i~f~~-~~p~n~ 411 (471) T protein:vir:10 376 FRSGYATLVKMILKHLGLSDKLKIKQTWTR-NSINND 411 (471) T ss_pred HHHHHHHHHHHHHHHhccCCCceeEEEeCC-CCCCCH Confidence 11111221 1222211 133432 222222 No 176 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=78.32 E-value=0.064 Score=27.14 Aligned_cols=124 Identities=9% Similarity=0.086 Sum_probs=57.4 Q ss_pred EEEeCC-C-CcCHHHHHHHHHHHHHhc-CcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCC Q lcl|Aclame:pro 205 IMYVTD-P-AQSATDVESLRDAMRNSK-GLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVP 281 (340) Q Consensus 205 il~~~~-~-~~~~e~~~~l~~~~~~~~-g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VP 281 (340) |+++++ . .++. ....++++++... .-++.+.+.+.. +.+.++.+..+.+.-+ +......+.||++-+|| T Consensus 1 V~k~~~l~~~~~~-~~~~~~~r~~~~~~~~~~~~~~~ld~---~~e~~e~~~~~lsGl~----d~l~~~~~~iaa~s~iP 72 (201) T protein:vir:10 1 MWKAKGLADLCDD-SDGAARLRLAQVDNNSGVGQAIGIDA---DSEEYNVLNSDIGGID----TFLSQKFDRIVALSGIH 72 (201) T ss_pred CccchHHHHHhcC-ChHHHHHHHHHHHHhhhhhhhheeec---CCcceeeeecCcCChH----HHHHHHHHHHHhHhcCc Confidence 665543 1 1111 1223444444221 112233333321 1234555555555544 34455778999999999 Q ss_pred HHHc-ccccccccccc-cHHHHHHHHHH-------HHHHHHHHHHHHHHHhhCcc-ceeecc-cccCCCC Q lcl|Aclame:pro 282 FQLM-GGKPENIGSLG-DVEKVAKVFVR-------NELSPLQDRFREVNDWLGME-VIRFKE-YTLDNPE 340 (340) Q Consensus 282 p~~l-G~~~~~~~~~~-n~e~~~~~f~~-------~~l~P~~~~ie~ln~~l~~~-~~rf~~-~~l~~~~ 340 (340) -..| |..+ ++++ +-+...+.||. ..|+|.++++-++-.+ -++ -+.|++ +.+.+.| T Consensus 73 ~t~LfG~sp---~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~~~~~-~~~~~~~f~pL~~~s~ke 138 (201) T protein:vir:10 73 EIILKGKNV---GGVSASQNTALETFYGYVDRKRKAELLPLLEFLLPFIVT-EQEWSVEFNPLSQVSDKD 138 (201) T ss_pred hhhhcCCCC---ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCceEeeCCCCCCCHHH Confidence 9776 4433 3343 44555556663 4455555544332111 122 145665 2223333 No 177 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=77.34 E-value=0.13 Score=25.52 Aligned_cols=301 Identities=11% Similarity=0.016 Sum_probs=108.0 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) +.++++++.. ..+..++ +..| |..+.+ ...+|+ +--|+.+. +-....+.. T Consensus 74 l~~~~~~~~~---~~~~~ki-~~n~--~k~Iv~--~~~~yl--------~g~p~~~~--------------~~d~~~~~~ 123 (511) T protein:vir:93 74 LVELTRRKEE---YMADNRV-AHDY--ASYISD--FINGYF--------LGNPIQYQ--------------DDDKDVLEV 123 (511) T ss_pred ccccCcCccc---ccCccee-ecch--HHHHHH--HHhhhh--------cccCeeec--------------cCChHHHHH Confidence 2111111000 0000000 0000 000000 000111 11121110 001111111 Q ss_pred HHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeC--C-- Q lcl|Aclame:pro 81 AST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVEN--F-- 146 (340) Q Consensus 81 ~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~--~-- 146 (340) +.. +.-| ........++.+.+.+|.||..+.++..|++ .+..++|..+-+..+. . +||.... + T Consensus 124 l~~~~~~n--~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~~~~~ 200 (511) T protein:vir:93 124 IEAFNDLN--DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTD 200 (511) T ss_pred HHHHHhhc--CHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeeccccc Confidence 111 1111 1123456677889999999999999888864 4666777655432221 1 1222210 0 Q ss_pred -ce---EEEEccccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 -TQ---PHEFAPDTVFHLLEPDI-------------------------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 147 -~~---~~~~~~~dvih~r~~~~-------------------------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) +. ...+.++.|.+++.-.. .+.-.|.|.+......+..-..+..-..+.+. T Consensus 201 ~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~ 280 (511) T protein:vir:93 201 EDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMS 280 (511) T ss_pred cceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH Confidence 00 01223333333321100 01124777777666666655544444445555 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDA 277 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~ 277 (340) ..+.|-.++.- ....+.++....++..... ...+ ...........++.++..++-......+....+.-.+.|... T Consensus 281 ~~~~~~lv~~G-~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~ 356 (511) T protein:vir:93 281 DLNDAMLLIKG-NLNLDPVEVRKQKEANVLF-LEPT--VYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMF 356 (511) T ss_pred HhhCcceeeec-CcccCchhhccccccccee-cccc--cccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 55666555541 1122333322222111000 0000 000000001123344444444444556677778889999999 Q ss_pred hcCCHHHcccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCc-c--------ceeecccccCC Q lcl|Aclame:pro 278 HRVPFQLMGGKPENIGSLGDVEK----------VAKVFVRNELSPLQDRFREVNDWLGM-E--------VIRFKEYTLDN 338 (340) Q Consensus 278 f~VPp~~lG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~l~~-~--------~~rf~~~~l~~ 338 (340) -++|..-.+-...+. +.-.+.- ..+.++...|.-.++.|.++-...+. + .+.|.+ .+.. T Consensus 357 s~~P~~~~~~~~~n~-Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~-~~p~ 434 (511) T protein:vir:93 357 TNTPNMKDDNFSGTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNR-NLPK 434 (511) T ss_pred hCCcccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCC-CCCC Confidence 999975433211111 1000100 01112222222222222221111110 0 012221 1111 Q ss_pred CC Q lcl|Aclame:pro 339 PE 340 (340) Q Consensus 339 ~~ 340 (340) .+ T Consensus 435 n~ 436 (511) T protein:vir:93 435 SL 436 (511) T ss_pred CH Confidence 11 No 178 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=76.57 E-value=0.13 Score=25.37 Aligned_cols=315 Identities=10% Similarity=-0.006 Sum_probs=100.0 Q ss_pred CCCCCCCccccccc-CCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTA-SAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNV 79 (340) Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~ 79 (340) ++++.++-.....- ..... ...-..+............+- .+|...-|+... +.++ .++-...+-..+.+. T Consensus 43 ~~~~~~~~~~~~~yY~g~~~--~i~~~~~~~~~~~~~~~~ki~----~n~~~~ivd~~~-~~l~-g~~~~~~~~d~~~~~ 114 (481) T protein:vir:10 43 QTEQVPRLEMLESYYLNRNT--DILAGERRLQKYGDKADHRAV----HNYAKYVSRFIV-GYLT-GNPITITHQDNQTND 114 (481) T ss_pred HHHHHHHHHHHHHHhcCCCc--ccccCccccccccccccceee----cchHHHHHHHHH-hhhc-cCCceEecCChhHHH Confidence 11111110000000 00000 000000000000000000000 001100000000 0000 000000011111111 Q ss_pred HHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeCC-ce Q lcl|Aclame:pro 80 LAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVENF-TQ 148 (340) Q Consensus 80 ~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~~-~~ 148 (340) .+.. +..|. ....+..++.+.+.+|.+|+.+.++..|++ .+..++|..+-+..+. . ++|..... +. T Consensus 115 ~l~~~~~~n~--~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~ 191 (481) T protein:vir:10 115 KIIELNDLND--ADEVNSDLALNLSIYGRAYEIVYRDFEDRD-TFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKV 191 (481) T ss_pred HHHHHHHhcC--hhHHHHHHHHHHHhcCeEEEEEEeCCCCeE-EEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCc Confidence 1111 11221 123566778899999999999999888875 4666777655332221 1 11221111 11 Q ss_pred ----EEEEccccEEEecCCC-----------C---------CCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 149 ----PHEFAPDTVFHLLEPD-----------I---------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGY 204 (340) Q Consensus 149 ----~~~~~~~dvih~r~~~-----------~---------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~g 204 (340) ...+.++.|.++..-+ + .+...|.|.+......+........-...-+.-.+.|-. T Consensus 192 ~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~ 271 (481) T protein:vir:10 192 PVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAML 271 (481) T ss_pred eEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcee Confidence 0112223332221100 0 012246666654444443222221111222333344555 Q ss_pred EEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHH Q lcl|Aclame:pro 205 IMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQL 284 (340) Q Consensus 205 il~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~ 284 (340) ++. .....+++....++..-.. ... .+...... +...+++| +........+.+..+.-++.|...-++|... T Consensus 272 ~~~-g~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~-~~~~~~~~--l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~ 343 (481) T protein:vir:10 272 AII-GNVDLDSEDAKAFRDANMI-HLE---PGTNANGS-EGKAEVKY--VYKQYDVAGVEAYKKRLQNDIHKYTNTPDLN 343 (481) T ss_pred Eee-cCcCCCccchhhhhhccce-ecc---ccccccCC-CCCcceeE--EeecCCHHHHHHHHHHHHHHHHHHhCCcccc Confidence 553 1112333333333321100 000 01111111 11123333 3333345567777788899999999999765 Q ss_pred cccccccccccccHHHHHHHHHHHHHHHHH----HH----HHHHH----HhhCcc----------ceeecccccCCCC Q lcl|Aclame:pro 285 MGGKPENIGSLGDVEKVAKVFVRNELSPLQ----DR----FREVN----DWLGME----------VIRFKEYTLDNPE 340 (340) Q Consensus 285 lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~----~~----ie~ln----~~l~~~----------~~rf~~~~l~~~~ 340 (340) .|-...+. +.+.. .+....+.=.+ .. ++++. ..++.. .+.|.+-.-.+.. T Consensus 344 ~~~~~~n~----Sg~Al--~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~ 415 (481) T protein:vir:10 344 DEQFSGVQ----SGESM--KYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMM 415 (481) T ss_pred cccccccc----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCHH Confidence 54322111 11111 11111111111 11 11111 111110 1223221111110 No 179 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=76.17 E-value=0.14 Score=25.29 Aligned_cols=277 Identities=11% Similarity=0.080 Sum_probs=100.3 Q ss_pred CCCCCCCccccccc-CCc-c------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPRKAVAMTA-SAP-Q------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~~~~~~~~-~~~-~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) +.++.+........ ..+ - ....|.||+|..+ T Consensus 59 ~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~~~yl~g~p~~~----------------------------------- 103 (478) T protein:vir:10 59 LDAPFKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTF----------------------------------- 103 (478) T ss_pred cccchhhhcccccccccccceeccchHHHHHHHHhhhhcccCcee----------------------------------- Confidence 22221110000000 000 0 0001222222111 Q ss_pred hhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeeccc----Cc---- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVD----DS---- 138 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~----~~---- 138 (340) .+-..+....+..+..|. .......++.+.+.+|.+|+.+..+..|++ .+..++|..+.+..+ +. T Consensus 104 ----~~~~~~~~~~l~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~~~ 176 (478) T protein:vir:10 104 ----GVDNDKALKQIQHTLNHK--WDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAF 176 (478) T ss_pred ----ecCChHHHHHHHHHHhcc--HHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 011111222222222221 123445567888999999999999888864 466666655443221 11 Q ss_pred -eEEEEeCCceEEEEccccEEEecCCC------------------------------C----CCCcccccchhhhHHHHH Q lcl|Aclame:pro 139 -VFWFVENFTQPHEFAPDTVFHLLEPD------------------------------I----NQEIYGLPEYLSALNSAW 183 (340) Q Consensus 139 -~~y~~~~~~~~~~~~~~dvih~r~~~------------------------------~----~~~~~G~sp~~~a~~~i~ 183 (340) ++|...+......+.++.|.+++..+ | .+...|.|.+......++ T Consensus 177 ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liD 256 (478) T protein:vir:10 177 IRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTIID 256 (478) T ss_pred EEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHHHH Confidence 12222111111112223332221100 0 011246776666555554 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHH Q lcl|Aclame:pro 184 LNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDF 263 (340) Q Consensus 184 ~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf 263 (340) .-..+..-..+.++..+.|-.++ .+...++ .......++. .+++.+. +....++++... ......+ T Consensus 257 a~~~~~S~~~~~~~~~~~~~~~~--~g~~~~~--~~~~~~~~~~-------~~~~~~~-~~~~~~~~~l~~--~~~~~~~ 322 (478) T protein:vir:10 257 ALDKRLSDTQNTFDESVELIYIL--KGYEGED--MKDFMHNLKY-------YKAISVA-GESGSGVDTIKV--EVPIDSV 322 (478) T ss_pred HHHHHHHHHHHHHHHhhCcceee--ecCCccc--ccchhhhhhh-------CceeEec-CCCCCcceEEee--cCCHHHH Confidence 43333333333333344454444 4432221 1111111111 1222221 112234444432 3345667 Q ss_pred HHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHH--------HHHHH----HHHhhCccc--- Q lcl|Aclame:pro 264 FNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQ--------DRFRE----VNDWLGMEV--- 328 (340) Q Consensus 264 ~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~--------~~ie~----ln~~l~~~~--- 328 (340) .+..+.-.+.|...-++|..-.+ +.+ +|.......+.-..+.=.+ ..+.+ +...+|.++ T Consensus 323 ~~~~~~l~~~I~~~s~~p~~~~~----~~~--~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~~ 396 (478) T protein:vir:10 323 KEYTKMLRDYIIEFGQGVDFQQD----KFG--NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRVQ 396 (478) T ss_pred HHHHHHHHHHHHHHhCCcCcCcc----ccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc Confidence 77788888999999999853221 111 1221211111111111111 11111 112222211 Q ss_pred ---eeecccccCCCC Q lcl|Aclame:pro 329 ---IRFKEYTLDNPE 340 (340) Q Consensus 329 ---~rf~~~~l~~~~ 340 (340) +.|.+.. ...+ T Consensus 397 ~i~i~f~~~~-p~~~ 410 (478) T protein:vir:10 397 DIEITFNFNV-MVNE 410 (478) T ss_pred cceEEeCCCC-CCCH Confidence 2333211 1111 No 180 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=75.89 E-value=0.14 Score=25.24 Aligned_cols=289 Identities=11% Similarity=0.011 Sum_probs=105.1 Q ss_pred CCCC-C--CCcccccccCCcc------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhc Q lcl|Aclame:pro 1 MSKR-K--PRKAVAMTASAPQ------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRS 65 (340) Q Consensus 1 m~~~-~--~~~~~~~~~~~~~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~ 65 (340) .-+. + +++.......+.- ....|.||+|. .+..-. T Consensus 67 ~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~-------------------------~~~~~d----- 116 (501) T protein:vir:27 67 RGENHDVLQFGRRKDREMADKRAVHNYGRMISKFKTGYLAGNPI-------------------------RVEYDD----- 116 (501) T ss_pred cCCCccccccCccCccccccceeccchHHHHHHHHhhhhcccCe-------------------------eEecCC----- Confidence 1110 0 0000000000000 00111222221 110000 Q ss_pred chhhhhhhhhhhhhHH-HhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC---c--- Q lcl|Aclame:pro 66 AVHHSSPIYVKRNVLA-STYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD---S--- 138 (340) Q Consensus 66 ~~~~~~~i~~k~n~~~-~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~---~--- 138 (340) ... .......+ ..+.-|. .......++.+.+.+|.+|..+.++..|++ .+..++|..+.+..+. + T Consensus 117 ~~~-----~~~~~~~l~~~~~~n~--~~~~~~~~~~~~~~~G~a~~~vy~ded~~~-~i~~~~p~~~~~v~d~~~~~~~~ 188 (501) T protein:vir:27 117 NDN-----NSQNDDTIKRIGRIND--IDSHNRTLIRDLSQTGRAYEVIYRNEYDET-RIKRLNPLETFVIYDNSLEDNSI 188 (501) T ss_pred ccc-----hHHHHHHHHHHHHhcC--hhHHHHHHHHHHhhCCeEEEEEEeCCCCce-EEEEEccceeEEEecCCCCCceE Confidence 000 00000000 1111221 123456778889999999999999988864 3555666554332211 0 Q ss_pred ---eEEEEeCC-ce--E-EEEccc------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHH Q lcl|Aclame:pro 139 ---VFWFVENF-TQ--P-HEFAPD------------------------TVFHLLEPDINQEIYGLPEYLSALNSAWLNES 187 (340) Q Consensus 139 ---~~y~~~~~-~~--~-~~~~~~------------------------dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~a 187 (340) ++|..... +. . ..+.++ .|++++. ...|.|.+......+..... T Consensus 189 ~~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----n~~g~sd~e~v~~liDa~d~ 263 (501) T protein:vir:27 189 AAVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLN-----NVDGIGDYETELYLIDLYDS 263 (501) T ss_pred EEEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecC-----CCCCCCchhhhHHHHHHHHH Confidence 11211110 00 0 011111 1344332 23577877776666665555 Q ss_pred HHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHH Q lcl|Aclame:pro 188 ATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIK 267 (340) Q Consensus 188 a~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~ 267 (340) +..-....+.-.+.|-.++.-.....+++....++... .......+.. .+...+.++..++-......+.+.. T Consensus 264 ~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~ 336 (501) T protein:vir:27 264 AESDTANHMSDMADAILAIYGDLALPKGMQASDMKRTR--LMQLKPPKSA-----DGKEGTVKAEYLTKSYDVSGAEAYK 336 (501) T ss_pred HHHHHHHHHHHhcCceeeeecCccCCcccchhhhhhcC--ceeecccccc-----cCCCCCcceeeeeccCCHHHHHHHH Confidence 55544555555555555553211111222222222110 0000000000 0112334454444444455566777 Q ss_pred HhhHHHHHHHhcCCHHHcccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhhCcc-------c-e Q lcl|Aclame:pro 268 KASAADLMDAHRVPFQLMGGKPENIGSLGDVEK----------VAKVFVRNELSPLQDRFREVNDWLGME-------V-I 329 (340) Q Consensus 268 ~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~l~~~-------~-~ 329 (340) +.-.+.|+..-++|....+-..++ .+...++- ..+..+...|.-+++.+.++-...+.. + + T Consensus 337 ~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v 415 (501) T protein:vir:27 337 TRLNRDIHIFTNIPDMSDTNFSGN-TSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKI 415 (501) T ss_pred HHHHHHHHHHhCCcccCccccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceE Confidence 888899999999997544321111 11110110 011122222222222222211111110 0 2 Q ss_pred eecccccCCCC Q lcl|Aclame:pro 330 RFKEYTLDNPE 340 (340) Q Consensus 330 rf~~~~l~~~~ 340 (340) .|.+.-..+.. T Consensus 416 ~f~~~~p~n~~ 426 (501) T protein:vir:27 416 TFTPNLPKSLN 426 (501) T ss_pred EeCCCCCcCHH Confidence 23221111111 No 181 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=74.43 E-value=0.16 Score=24.97 Aligned_cols=297 Identities=11% Similarity=0.038 Sum_probs=104.7 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) +.++++++. ...+..++ +..| |..+.+ ...+|+ +.-|+.+. +-....+.. T Consensus 74 l~~~~~~~~---~~~~~~ki-~~n~--~k~Iv~--~~~~yl--------~g~p~~~~--------------~~d~~~~~~ 123 (511) T protein:vir:78 74 LVELTRRKE---EYMADNRV-AHDY--ASYISD--FINGYF--------LGNPIQYQ--------------DDDKDVLEA 123 (511) T ss_pred ccccCcccc---cccCccee-ecch--HHHHHH--HHhhhh--------cccCceee--------------cCchHHHHH Confidence 111111100 00000000 0000 000000 000111 11121110 000111111 Q ss_pred HHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeC--C-- Q lcl|Aclame:pro 81 AST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVEN--F-- 146 (340) Q Consensus 81 ~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~--~-- 146 (340) +.. +.-|. .......++.+.+.+|.||..+.++..|++ .+..++|..+-+..+. . +||.... + T Consensus 124 l~~~~~~n~--~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~ 200 (511) T protein:vir:78 124 IEAFNDLND--VESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTD 200 (511) T ss_pred HHHHHhhcC--hhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccc Confidence 111 11111 123445677889999999999999888864 5666766655433221 1 1222211 0 Q ss_pred -ce---EEEEccccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 -TQ---PHEFAPDTVFHLLEPDI-------------------------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 147 -~~---~~~~~~~dvih~r~~~~-------------------------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) .. ...+.++.+.++..-+. .+.-.|.|.+......++.-..+..-..+.+. T Consensus 201 ~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~ 280 (511) T protein:vir:78 201 EDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMS 280 (511) T ss_pred cceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH Confidence 00 01233444443321100 01124777777666666544443333333444 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccC-CccccccceeeccchhhHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSP-NGKPDGIKIVPLSEVATKDDFFNIKKASAADLMD 276 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~-~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~ 276 (340) ..+.|-.++.- ....+.++....++..--.. .....+... ....++.+.+.+.-......+.+..+.-.+.|+. T Consensus 281 ~~~~~~lv~~G-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~ 355 (511) T protein:vir:78 281 DLNDAMLLIKG-NLNLDPVEVRKQKEANVLFL----EPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 355 (511) T ss_pred Hhhcchhheec-CccCCchhhcccccccceec----cccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 44455555531 12233333222221110000 000001000 0112233344444333455667777888899999 Q ss_pred HhcCCHHHcccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCcc---------ceeeccc Q lcl|Aclame:pro 277 AHRVPFQLMGGKPENIGSLGDVEKVAK-------------VFVRNELSPLQDRFREVNDWLGME---------VIRFKEY 334 (340) Q Consensus 277 ~f~VPp~~lG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~l~~~---------~~rf~~~ 334 (340) .-++|....+-... +- +.+.... .++...|.-.++.|.++-...+.. -+.|.+ T Consensus 356 ~s~~P~~~~~~~~~---n~-Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~- 430 (511) T protein:vir:78 356 FTNTPNMKDDNFSG---TQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNR- 430 (511) T ss_pred HhCCcccccccccc---cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCC- Confidence 99999754432211 11 1111111 111222222222222211111100 022321 Q ss_pred ccCCCC Q lcl|Aclame:pro 335 TLDNPE 340 (340) Q Consensus 335 ~l~~~~ 340 (340) .+...+ T Consensus 431 ~~p~n~ 436 (511) T protein:vir:78 431 NLPKSL 436 (511) T ss_pred CCCcCH Confidence 111111 No 182 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=74.43 E-value=0.16 Score=24.97 Aligned_cols=297 Identities=11% Similarity=0.038 Sum_probs=104.7 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) +.++++++. ...+..++ +..| |..+.+ ...+|+ +.-|+.+. +-....+.. T Consensus 74 l~~~~~~~~---~~~~~~ki-~~n~--~k~Iv~--~~~~yl--------~g~p~~~~--------------~~d~~~~~~ 123 (511) T protein:vir:96 74 LVELTRRKE---EYMADNRV-AHDY--ASYISD--FINGYF--------LGNPIQYQ--------------DDDKDVLEA 123 (511) T ss_pred ccccCcccc---cccCccee-ecch--HHHHHH--HHhhhh--------cccCceee--------------cCchHHHHH Confidence 111111100 00000000 0000 000000 000111 11121110 000111111 Q ss_pred HHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeC--C-- Q lcl|Aclame:pro 81 AST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVEN--F-- 146 (340) Q Consensus 81 ~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~--~-- 146 (340) +.. +.-|. .......++.+.+.+|.||..+.++..|++ .+..++|..+-+..+. . +||.... + T Consensus 124 l~~~~~~n~--~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~vr~~~~~~~~~~~ 200 (511) T protein:vir:96 124 IEAFNDLND--VESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGVRYLRTKPIDKTD 200 (511) T ss_pred HHHHHhhcC--hhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccc Confidence 111 11111 123445677889999999999999888864 5666766655433221 1 1222211 0 Q ss_pred -ce---EEEEccccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 -TQ---PHEFAPDTVFHLLEPDI-------------------------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 147 -~~---~~~~~~~dvih~r~~~~-------------------------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) .. ...+.++.+.++..-+. .+.-.|.|.+......++.-..+..-..+.+. T Consensus 201 ~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~~~~~S~~~~~~~ 280 (511) T protein:vir:96 201 EDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMS 280 (511) T ss_pred cceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH Confidence 00 01233444443321100 01124777777666666544443333333444 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccC-CccccccceeeccchhhHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSP-NGKPDGIKIVPLSEVATKDDFFNIKKASAADLMD 276 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~-~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~ 276 (340) ..+.|-.++.- ....+.++....++..--.. .....+... ....++.+.+.+.-......+.+..+.-.+.|+. T Consensus 281 ~~~~~~lv~~G-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~ 355 (511) T protein:vir:96 281 DLNDAMLLIKG-NLNLDPVEVRKQKEANVLFL----EPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 355 (511) T ss_pred Hhhcchhheec-CccCCchhhcccccccceec----cccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 44455555531 12233333222221110000 000001000 0112233344444333455667777888899999 Q ss_pred HhcCCHHHcccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCcc---------ceeeccc Q lcl|Aclame:pro 277 AHRVPFQLMGGKPENIGSLGDVEKVAK-------------VFVRNELSPLQDRFREVNDWLGME---------VIRFKEY 334 (340) Q Consensus 277 ~f~VPp~~lG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~l~~~---------~~rf~~~ 334 (340) .-++|....+-... +- +.+.... .++...|.-.++.|.++-...+.. -+.|.+ T Consensus 356 ~s~~P~~~~~~~~~---n~-Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~- 430 (511) T protein:vir:96 356 FTNTPNMKDDNFSG---TQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNR- 430 (511) T ss_pred HhCCcccccccccc---cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCC- Confidence 99999754432211 11 1111111 111222222222222211111100 022321 Q ss_pred ccCCCC Q lcl|Aclame:pro 335 TLDNPE 340 (340) Q Consensus 335 ~l~~~~ 340 (340) .+...+ T Consensus 431 ~~p~n~ 436 (511) T protein:vir:96 431 NLPKSL 436 (511) T ss_pred CCCcCH Confidence 111111 No 183 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=72.71 E-value=0.18 Score=24.68 Aligned_cols=284 Identities=10% Similarity=0.115 Sum_probs=100.7 Q ss_pred CCCCCCCccccc-ccCCc-cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAM-TASAP-QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRN 78 (340) Q Consensus 1 m~~~~~~~~~~~-~~~~~-~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n 78 (340) +.++++...... ....+ -++ ++.|.. .+.+ ...+|+ +.-|+.+ ++-..+.+ T Consensus 59 ~~~~~~~~~~~~~~~~~~~~ki-~~n~~~--~Iv~--~~~~~l--------~g~p~~~--------------~~~d~~~~ 111 (468) T protein:vir:96 59 LFNAPKRNVKGEIDPFKPDWRM-YTNYHQ--NLVD--QKVAYA--------VANPVTY--------------GTEDEKSL 111 (468) T ss_pred cccccccccccccccccccccc-ccchHH--HHHH--HHHhhh--------ccCCcee--------------ccCChHHH Confidence 222211100000 00000 000 000000 0000 000110 0111111 11111222 Q ss_pred hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeCCceE Q lcl|Aclame:pro 79 VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVENFTQP 149 (340) Q Consensus 79 ~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~~~~~ 149 (340) ..+..+..|.+ ......++.+.+.+|.+|..+..+..|++ .+..++|..+-+..+. . ++|........ T Consensus 112 ~~l~~~~~n~~--~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~~ 188 (468) T protein:vir:96 112 KTIQEVLNHKW--DDKLVDILTAASNKGVEWIQPYVDEQGEF-KTFRVPAEQAIPIWTNKERDELKAFIRLYELDGGERV 188 (468) T ss_pred HHHHHHHhcCH--HHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEE Confidence 22222222211 22345577889999999999988888864 4555666544322111 1 11111111111 Q ss_pred EEEcccc---------------------------------------EEEecCCCCCCCcccccchhhhHHHHHHHHHHHH Q lcl|Aclame:pro 150 HEFAPDT---------------------------------------VFHLLEPDINQEIYGLPEYLSALNSAWLNESATL 190 (340) Q Consensus 150 ~~~~~~d---------------------------------------vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~ 190 (340) ..+.++. |++++. ...|.|.+......+..-..+.. T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n-----~~~g~sd~e~v~~liDa~d~~~S 263 (468) T protein:vir:96 189 EYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKN-----NPQEVSDLFMYKTIIDAMDKRLS 263 (468) T ss_pred EEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEecC-----CCCCCCchHHHHHHHHHHHHHHH Confidence 1112222 222221 23477766655554544443333 Q ss_pred HHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhh Q lcl|Aclame:pro 191 FRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKAS 270 (340) Q Consensus 191 ~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~ 270 (340) -..+.++..+.|-.++ ++..+++ .......++ . .+++.+.+.+ ..++++.... .....+.+..+.- T Consensus 264 ~~~~~~~~~~~p~lv~--~g~~~~~--~~~~~~~~~------~-~~~i~~~~d~-~~~~~~l~~~--~~~~~~~~~~~~l 329 (468) T protein:vir:96 264 DTQNTFDEATELIYVL--KGYEGED--LEEFMYNLK------Y-YKAINVDGDG-SGGVDTIQID--VPVQSAKEYLDML 329 (468) T ss_pred HHHHHHHHhcCceeee--ecCCccc--cchhhhhhh------c-CceEEecCCC-CCcceEEeec--CChHHHHHHHHHH Confidence 3344455555665554 4433321 111111111 1 1233332211 2334554433 3445566677778 Q ss_pred HHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHH--------HHHHHHH----HHHhhCccc------eeec Q lcl|Aclame:pro 271 AADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSP--------LQDRFRE----VNDWLGMEV------IRFK 332 (340) Q Consensus 271 ~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P--------~~~~ie~----ln~~l~~~~------~rf~ 332 (340) .+.|...-++|...- .+.+ +|.......+....+.= +-..|++ +...+|.++ +.|. T Consensus 330 ~~~I~~~s~~p~~~~----~~~~--~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~i~f~ 403 (468) T protein:vir:96 330 RDYVIEFGQGVDFQQ----DKFG--NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVEITFN 403 (468) T ss_pred HHHHHHHhCcccccc----cccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEEec Confidence 889999989885321 1111 12211111111111111 1111122 112233221 3333 Q ss_pred ccccCCCC Q lcl|Aclame:pro 333 EYTLDNPE 340 (340) Q Consensus 333 ~~~l~~~~ 340 (340) + .+...+ T Consensus 404 ~-~~p~d~ 410 (468) T protein:vir:96 404 F-NVMVNE 410 (468) T ss_pred C-CCCcCH Confidence 1 221112 No 184 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=71.42 E-value=0.2 Score=24.46 Aligned_cols=334 Identities=13% Similarity=0.037 Sum_probs=150.5 Q ss_pred CCCCCCCcccccccCCccce--EEEECCCceeecCcc---------hh------hhee-eeeecCchhhcccchHHhhh- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM--EAFTFGEPVPVLDKR---------DI------LDYV-ECISNGKWYEPPVSFSGLAK- 61 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~--~~~~f~~p~~~~~~~---------~~------~~~~-~~~~~~~~~~~pv~~~~l~~- 61 (340) |.-..-|..++.+.+.+.+. .+-..-+|-..++.. +. ++-+ |+-+--+|+...+++.-|.. T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~aasqp~~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~as 80 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLTAASQPMEPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELIAS 80 (629) T ss_pred CCccceeEEecCCCccceeeeccccCCCCcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEEEe Confidence 65443333222222211110 001112332222111 01 1110 11111223333333321110 Q ss_pred hhhcchh--hhhhhh-----hhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCcee----E-EEEEecCc Q lcl|Aclame:pro 62 SLRSAVH--HSSPIY-----VKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQL----I-KLLTSPAK 129 (340) Q Consensus 62 ~~r~~~~--~~~~i~-----~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~----~-~L~pl~~~ 129 (340) .++-++- -+.+-. .+........-..++-..+.++.+..++-+-|..|+.+.--..+.+ . +.+.+... T Consensus 81 ~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt~~ 160 (629) T protein:vir:10 81 ELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVTND 160 (629) T ss_pred eecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeecHH Confidence 0110110 011111 1111122222334555567788888999999999999875444432 2 22223333 Q ss_pred ceeecccCceEEEE-eCCceEEEEccccEEEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEE Q lcl|Aclame:pro 130 YTRRGVDDSVFWFV-ENFTQPHEFAPDTVFHLL--EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIM 206 (340) Q Consensus 130 ~~~~~~~~~~~y~~-~~~~~~~~~~~~dvih~r--~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil 206 (340) .+. .++..+-.+ ..+|..++|..+.=+-|| .|.|..-..--||+.+++.++.--...++-.++.-+.-..-.||| T Consensus 161 Ei~--~kg~g~~~i~lpdg~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakSRL~gnGvl 238 (629) T protein:vir:10 161 EVK--NKGAGKTDIELPDGTIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKSRLIGNGVV 238 (629) T ss_pred Hhc--cccCceeEEEcCCCceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHhHHhhCcee Confidence 322 122121122 345666777555323334 566666677889999999888877777776666666666666666 Q ss_pred EeCCCC-----------cC----------HHHHHHHHHHHH----Hhc---Ccccccccccc-cCCccccccceeeccch Q lcl|Aclame:pro 207 YVTDPA-----------QS----------ATDVESLRDAMR----NSK---GLGNFKNLFFY-SPNGKPDGIKIVPLSEV 257 (340) Q Consensus 207 ~~~~~~-----------~~----------~e~~~~l~~~~~----~~~---g~~n~~~~~vl-~~~~~~~g~~~~pl~~~ 257 (340) .++... -+ .-..+.+...+- ... +...+--++++ .|+..-++ ++.|... T Consensus 239 flP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~--ikhLkf~ 316 (629) T protein:vir:10 239 FLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQK--IFHLKIG 316 (629) T ss_pred EeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcC--eeeeeec Confidence 554211 00 012333333332 221 22222233333 23332233 4444443 Q ss_pred h-hHHHHHHHHHhhHHHHHHHhcCCHHHc-ccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HH-Hhh-------Cc Q lcl|Aclame:pro 258 A-TKDDFFNIKKASAADLMDAHRVPFQLM-GGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VN-DWL-------GM 326 (340) Q Consensus 258 ~-~d~qf~e~~~~~~~~I~~~f~VPp~~l-G~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln-~~l-------~~ 326 (340) . -+..-+.+|+-....+|...-|||..| |+..+ +|.=+.-|....=++.-|.|.+..|++ |. .+| |. T Consensus 317 ~eite~~iktR~daI~RlAmglDispErLLGlGsd--~NHWsAWqI~dedvrlHI~P~l~~ic~Ait~~~Lrp~L~~eGi 394 (629) T protein:vir:10 317 NEITEVEIKTRNDAIARLAMGLDVSPERLLGLGSN--SNHWSAWQIGDEDVQLHIKPVMEVLCAAIYREVLVATLRAEGI 394 (629) T ss_pred CchhHHHHhhHHHHHHHHHhccCCChhheeeccCC--ccceeeEEecccceeeecchHHHHHHHHHHhHHHHHHHHHhCC Confidence 3 344467889999999999999999764 66322 121122333334445567777777765 43 233 11 Q ss_pred c----ceeeccccc----CCCC Q lcl|Aclame:pro 327 E----VIRFKEYTL----DNPE 340 (340) Q Consensus 327 ~----~~rf~~~~l----~~~~ 340 (340) + ++=|+...| |.+| T Consensus 395 Dp~~Yvvw~DaS~Lt~dPd~~d 416 (629) T protein:vir:10 395 DPDRYVLWYDASGLTVDPDKTD 416 (629) T ss_pred CHHHhEeeecCcccccCCCCcH Confidence 1 233433222 1222 No 185 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=71.39 E-value=0.2 Score=24.46 Aligned_cols=303 Identities=11% Similarity=0.055 Sum_probs=105.5 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeee-----eecCchhh--ccc-----ch-HHhhhhhhcch Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVEC-----ISNGKWYE--PPV-----SF-SGLAKSLRSAV 67 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~-----~~~~~~~~--~pv-----~~-~~l~~~~r~~~ 67 (340) ||.--+. -.=-+|+... ..+.+++.- ....+||+ .++ .. ..+..+..... T Consensus 1 ~~~~~~~---------------~~~~~~~~~~--~~l~~~~~~~~~rl~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n 63 (484) T protein:vir:77 1 MTSPLQK---------------QENVDPEKAR--EEMLNLFTERTQDLGDNTAYYESERRPDAVGVTVPQQMQKLLAHVG 63 (484) T ss_pred CCCcccc---------------cCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhHHhhhhhcC Confidence 2221111 0001121100 001111110 00112221 111 00 01111111122 Q ss_pred hhhhhhhhhhhhHH-Hhhh-ccC-------------CCcHHHHHHHHHHHHHhCCeeEEEEecCCcee-------EEEEE Q lcl|Aclame:pro 68 HHSSPIYVKRNVLA-STYI-PHP-------------LLSRQDFSRFALDYLVFGNAFLEQRHSVTGQL-------IKLLT 125 (340) Q Consensus 68 ~~~~~i~~k~n~~~-~~~~-pnp-------------~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~-------~~L~p 125 (340) +..-++......+. ..|. +.. +-.......++.+.+.+|.||+.+.++..|.+ ..|.+ T Consensus 64 ~~~~ivd~~~~~l~~~g~~~~~~~~~~~~l~~i~~~N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~ 143 (484) T protein:vir:77 64 YPRLYIDAIAARQELEGFRLGGADKADEQLWDWWQANDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRV 143 (484) T ss_pred cHHHHHHHHHhhhccCceecCCcchhHHHHHHHHHhcCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEE Confidence 22222222211110 0011 000 00012234566788999999999999887753 24666 Q ss_pred ecCcceeecccCc--------eEE---------------------EEeCCceEEE-------EccccEEEecCCCCCCCc Q lcl|Aclame:pro 126 SPAKYTRRGVDDS--------VFW---------------------FVENFTQPHE-------FAPDTVFHLLEPDINQEI 169 (340) Q Consensus 126 l~~~~~~~~~~~~--------~~y---------------------~~~~~~~~~~-------~~~~dvih~r~~~~~~~~ 169 (340) ++|..+....+.. ++| ....++.... +..=.|++|.+..-..+. T Consensus 144 ~~p~~~~~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~ 223 (484) T protein:vir:77 144 EPPTNLYAQIDPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRLSDL 223 (484) T ss_pred eccceeEEEecCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccccccCcc Confidence 7766543222211 001 1111111000 000125666643333455 Q ss_pred ccccchh----hhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHH--HHHHHHHhcCcccccccccccCC Q lcl|Aclame:pro 170 YGLPEYL----SALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVES--LRDAMRNSKGLGNFKNLFFYSPN 243 (340) Q Consensus 170 ~G~sp~~----~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~--l~~~~~~~~g~~n~~~~~vl~~~ 243 (340) .|.|.+. .+..++....+-..-...|| +.|--+|. +...++...+. -...|+... +.++.+ ++ T Consensus 224 ~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~---a~p~~~i~--G~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~ 292 (484) T protein:vir:77 224 YGTTEITPELRSVTDAAARTLMLMQATAELM---GVPQRLLF--GVKGEELGVDPETGQTLFDAYL-----ARILAF-ED 292 (484) T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHh--CCCcchhcccccccchhhhhhh-----hhhccc-CC Confidence 7877654 23333332222222222333 33443332 22122111111 111122211 233333 22 Q ss_pred ccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH------- Q lcl|Aclame:pro 244 GKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR------- 316 (340) Q Consensus 244 ~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~------- 316 (340) ++.++..+...+-+ -|++..+.....|+++=++|++.+|....+.++ .+... +....|.=.+.. T Consensus 293 ---~~~~~~q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~S---g~Al~--~~~~~l~~ka~~k~~~f~~ 363 (484) T protein:vir:77 293 ---HESKAQQFSAAELR-NFVDALDALDRKAAAYTGLPPYYLSFSSENPAS---AEAIR--SSESRLVKTVERKNKIFGG 363 (484) T ss_pred ---CCceeEeecCCChH-HHHHHHHHHHHHHhcccCCCHHHhccccCcchH---HHHHH--HHHHHHHHHHHHHHHHHHH Confidence 24556555543322 377778888888888899999999864332222 12211 111111111111 Q ss_pred -HHHHHH----hhCc-c--------ceeecccccCCCC Q lcl|Aclame:pro 317 -FREVND----WLGM-E--------VIRFKEYTLDNPE 340 (340) Q Consensus 317 -ie~ln~----~l~~-~--------~~rf~~~~l~~~~ 340 (340) ++++.+ ..+. + .+.|.+-...+.. T Consensus 364 ~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~s~~ 401 (484) T protein:vir:77 364 AWEQAMRVAYKVMNGGDIPPEYYRMESIWRDPSTPTYA 401 (484) T ss_pred HHHHHHHHHHHHhCCCCcccccccceEEecCCCCCCHH Confidence 111111 1111 1 0223221111111 No 186 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=71.35 E-value=0.2 Score=24.45 Aligned_cols=299 Identities=11% Similarity=0.037 Sum_probs=91.8 Q ss_pred CCCCCCCccc-----------cc-ccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh Q lcl|Aclame:pro 1 MSKRKPRKAV-----------AM-TASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH 68 (340) Q Consensus 1 m~~~~~~~~~-----------~~-~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~ 68 (340) +.+++.+-.. .. ....+.....+ ....+. +|....|+. ++..+-.++. T Consensus 17 ~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~---~~~~~~---------------n~~~~ivd~--~~~~l~~~g~ 76 (456) T protein:vir:79 17 IDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSF---QREART---------------NWGLMVRDS--VADRIIPNGI 76 (456) T ss_pred HHHHHHHHHHHHHHHhccCChhhcCcccChhhchh---hhhhhc---------------chHHHHHHH--HHhhhccCCe Confidence 0100000000 00 00000000000 000000 011000000 0000000000 Q ss_pred hhhhhhhh-hh-hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc-------- Q lcl|Aclame:pro 69 HSSPIYVK-RN-VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS-------- 138 (340) Q Consensus 69 ~~~~i~~k-~n-~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~-------- 138 (340) -.++-.+. .+ .+...+..|.+ ......++.+.+.+|.||+.+..+..|.+ .+..++|..+....+.. T Consensus 77 ~~~~~~d~~~~~~~~~~~~~n~~--d~~~~~~~~~a~~~G~a~~~~~~~edg~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 153 (456) T protein:vir:79 77 TVGGSADSDLALRARRIWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRSA 153 (456) T ss_pred ecCCCCCccHHHHHHHHHHhcCh--hHHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEeccceeEEEEcCCCCCceEEE Confidence 00000000 00 00011111211 12345677888999999999999888876 46677666543332210 Q ss_pred -eEEEEeC-----------CceEE----------------EEc------cccEEEecCCCC---CCCcccccchhhhHHH Q lcl|Aclame:pro 139 -VFWFVEN-----------FTQPH----------------EFA------PDTVFHLLEPDI---NQEIYGLPEYLSALNS 181 (340) Q Consensus 139 -~~y~~~~-----------~~~~~----------------~~~------~~dvih~r~~~~---~~~~~G~sp~~~a~~~ 181 (340) ++|...+ .+... ... ..++-|.-...| .....|+|.+...... T Consensus 154 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~l 233 (456) T protein:vir:79 154 MRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDI 233 (456) T ss_pred EEEEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHH Confidence 0111101 00000 000 001111100000 0112466666654443 Q ss_pred HHHHHHHHHHHHHHHHccCCCceEEEeC---CCCcCHHHHHHH--HHHHHHhcCcccccccccccCCccccccceeeccc Q lcl|Aclame:pro 182 AWLNESATLFRRKYYQNGAHAGYIMYVT---DPAQSATDVESL--RDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) Q Consensus 182 i~~~~aa~~~~~~~f~NG~~p~gil~~~---~~~~~~e~~~~l--~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~ 256 (340) ++....+..-........+.|--++.-. ....++ .-+.+ .+.|+... +.++.+. .+.++..+.. T Consensus 234 iD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~-~g~~i~~~~~~~~~~-----~~~~~~~-----~~~~~~q~~~ 302 (456) T protein:vir:79 234 INRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDE-NGNAIDYASIFEAAP-----GALWELP-----PGVDIWESQT 302 (456) T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccc-cccccchhhhhhhhc-----cccccCC-----CCcceeeecc Confidence 3322222111111112222222222100 000111 10111 12222211 1233322 2334444433 Q ss_pred hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH----H----HHHHHhh---- Q lcl|Aclame:pro 257 VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR----F----REVNDWL---- 324 (340) Q Consensus 257 ~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~----i----e~ln~~l---- 324 (340) .+- ..|.+..+....+|++.=++|++.+|....+. ++ +.. .+....|.=.+.. + +++.+.+ T Consensus 303 ~~~-~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~N~-Sg---~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~ 375 (456) T protein:vir:79 303 NDF-TPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-SA---EGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIE 375 (456) T ss_pred cCh-HHHHHHHHHHHHHHHhhcCCChhHhcccccCc-HH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 221 23888888999999999999999998532221 11 111 1111111111111 1 1111111 Q ss_pred Cc-c----ceeecccccCCC-C Q lcl|Aclame:pro 325 GM-E----VIRFKEYTLDNP-E 340 (340) Q Consensus 325 ~~-~----~~rf~~~~l~~~-~ 340 (340) |. + -+.|.+-...+. + T Consensus 376 g~~~~~~i~v~w~~~~~~s~~~ 397 (456) T protein:vir:79 376 GESVEDTVDVSFESPDRVTLGE 397 (456) T ss_pred CCCccccceEEeCCCCCcCHHH Confidence 11 0 012321100000 0 No 187 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=70.71 E-value=0.21 Score=24.35 Aligned_cols=320 Identities=14% Similarity=0.091 Sum_probs=137.0 Q ss_pred CCCCCCCcccccccCCccce----EEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhh---hhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM----EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHH---SSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~----~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~---~~~i 73 (340) ++++-..++.+.+.-++..+ ..+.++. .-.-.|+. .+.++.-..|.+..|.-+.| .+++ T Consensus 16 ~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g-------~~~~~~~~-------~~~~~~~~eLI~~YR~ma~~pEvd~Av 81 (511) T protein:vir:56 16 EKNPVRSFSAPDNVDGAKEIHTNLLAPQLGH-------AIIPSDAQ-------SEGTIPVKELIKSYRALAEYHEVDDAI 81 (511) T ss_pred ccCCcccccCCCCCCCceEEecccccceecc-------eecccccc-------ccCccchHHHHHHHHHHhhccchhhHH Confidence 22221111111111111000 0011110 00000000 01111112233333322221 1122 Q ss_pred hhhhhhHHHh-----------------------------hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEE Q lcl|Aclame:pro 74 YVKRNVLAST-----------------------------YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLL 124 (340) Q Consensus 74 ~~k~n~~~~~-----------------------------~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~ 124 (340) ..-.|....+ ..-|-+.+..--..++..|.+.|..|..++-+..-.+.+|. T Consensus 82 ~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~ll~F~~~~~~~fR~WYVDgRi~fHkiid~k~GI~eLr 161 (511) T protein:vir:56 82 QEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVSLLQMRKHGYKWFRKWYVDSRIYFHKILDKDNNIIELR 161 (511) T ss_pred HHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhcceEEEEEEeccccceeehh Confidence 2111111100 00011111111224456788999999999888777799999 Q ss_pred EecCcceeecccC--------------ceEEEEeCC--------------ceEEEEccccEEEec--CCC-CCCCccccc Q lcl|Aclame:pro 125 TSPAKYTRRGVDD--------------SVFWFVENF--------------TQPHEFAPDTVFHLL--EPD-INQEIYGLP 173 (340) Q Consensus 125 pl~~~~~~~~~~~--------------~~~y~~~~~--------------~~~~~~~~~dvih~r--~~~-~~~~~~G~s 173 (340) .|+|..++..+.. ..||.+... ...+.++.+.|.|.. ..+ +.+.-+.+| T Consensus 162 ~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~~~g~i~s 241 (511) T protein:vir:56 162 PLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCADDPYIIG 241 (511) T ss_pred hcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccCCCCeeec Confidence 9999877643211 123444321 134677888885553 332 345557888 Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC-HHHHHHHHHHHHHhc---------Cc-ccccc-ccccc Q lcl|Aclame:pro 174 EYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS-ATDVESLRDAMRNSK---------GL-GNFKN-LFFYS 241 (340) Q Consensus 174 p~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~-~e~~~~l~~~~~~~~---------g~-~n~~~-~~vl~ 241 (340) -+..|...+..-.-.++..-=|=-.-|.=.-|+++.=+.+. ..+.+=++.-+..++ |. .|.++ +-+++ T Consensus 242 yLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~msMlE 321 (511) T protein:vir:56 242 YLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTNAMSMLE 321 (511) T ss_pred cchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhhhhhHh Confidence 88888877766655555544443444555566665433443 333333444443221 21 22222 22222 Q ss_pred -------CCccccccceeec--cchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccc-cccccc---cHHHHHHHHHHH Q lcl|Aclame:pro 242 -------PNGKPDGIKIVPL--SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPE-NIGSLG---DVEKVAKVFVRN 308 (340) Q Consensus 242 -------~~~~~~g~~~~pl--~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~-~~~~~~---n~e~~~~~f~~~ 308 (340) .||+ |.+++.| +.+.-+++=++ +-...+-++.+||.+.++-... ++-+++ .+.-....|.+ T Consensus 322 DyWLpRReGgr--gTEItTLpGgqnlgem~DV~---YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~K- 395 (511) T protein:vir:56 322 DYYLPRREGSK--GTEVSTLPGGQSLGDIEDVL---YFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFTK- 395 (511) T ss_pred hhcccccCCCC--ccceeeccccCCcChHHHHH---HHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHHH- Confidence 1333 4444443 33333433333 3457788999999999964321 112222 23333334443 Q ss_pred HHHHHHHHHHHHH-HhhC-----ccceeec---------ccccCCCC Q lcl|Aclame:pro 309 ELSPLQDRFREVN-DWLG-----MEVIRFK---------EYTLDNPE 340 (340) Q Consensus 309 ~l~P~~~~ie~ln-~~l~-----~~~~rf~---------~~~l~~~~ 340 (340) -|.-+..++.++. +.|- -.++.=+ .|++...- T Consensus 396 FI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn 442 (511) T protein:vir:56 396 FVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDS 442 (511) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecc Confidence 3666666776533 2221 1111111 12222211 No 188 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=70.68 E-value=0.21 Score=24.35 Aligned_cols=272 Identities=8% Similarity=0.007 Sum_probs=102.9 Q ss_pred CCCCCCCccc-----cccc-CCcc------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV-----AMTA-SAPQ------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKS 62 (340) Q Consensus 1 m~~~~~~~~~-----~~~~-~~~~------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~ 62 (340) +.++..+... .... .+.. ....|.||.|...... T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~G~p~~~~~~---------------------------- 89 (470) T protein:vir:10 38 TTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYVASVFPDIDVG---------------------------- 89 (470) T ss_pred hccccchhcccccccccccccCCcccccchHHHHHHhhhhheeccceeeecC---------------------------- Confidence 2222111000 0000 0000 0012334444321100 Q ss_pred hhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---- Q lcl|Aclame:pro 63 LRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---- 138 (340) Q Consensus 63 ~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---- 138 (340) ..+.+..+..+..+. ....+..+..+...+|.||.++..+..|++ .+..++|..+-+..+.. T Consensus 90 -----------d~~~~~~l~~~~~~~--~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~-~~~~~~p~~~~~v~d~~~~~~ 155 (470) T protein:vir:10 90 -----------KDADNKKIIDVLGDD--RALTLNGLLVDSSNAGRAWLHYWIDEDGNF-RYGIIQPDQITPIYATTLDNK 155 (470) T ss_pred -----------chHHHHHHHHHHhhh--HHHHHHHHHHHHhhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCc Confidence 001111111111110 112234566788899999999999988864 45666666554432211 Q ss_pred -----eEEEEeC-Cc-eE----EEEccccE---------------------------------------------EEecC Q lcl|Aclame:pro 139 -----VFWFVEN-FT-QP----HEFAPDTV---------------------------------------------FHLLE 162 (340) Q Consensus 139 -----~~y~~~~-~~-~~----~~~~~~dv---------------------------------------------ih~r~ 162 (340) +||.... .+ .. ..+.++.+ +|++. T Consensus 156 ~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n 235 (470) T protein:vir:10 156 LLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSK 235 (470) T ss_pred eEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEEeec Confidence 1222211 11 10 11122222 33322 Q ss_pred CCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccC Q lcl|Aclame:pro 163 PDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSP 242 (340) Q Consensus 163 ~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~ 242 (340) .-.|.|.+......+..-..+..-..+.++.-+.|-.++. +...++ .......++.. + .+.+.. T Consensus 236 -----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~--g~~~~~--~~~~~~~~~~~------~-~i~~~~ 299 (470) T protein:vir:10 236 -----NKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLT--NYGGAD--LHQFMNDLRKY------K-SIKINN 299 (470) T ss_pred -----CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeee--cCCccc--cchhhhhhhhc------C-eEeccC Confidence 1247777776666665544444444444555555666654 322221 11112222111 1 122221 Q ss_pred C--ccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHH----- Q lcl|Aclame:pro 243 N--GKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQD----- 315 (340) Q Consensus 243 ~--~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~----- 315 (340) . ++..++++.... .....+.+..+.-.+.|...-++|.. . ..+ +||.......+.-..+.=.+. T Consensus 300 ~~~~~~~~~~~lt~~--~~~~~~~~~~~~L~~~I~~~s~~p~~--~--~~~---~gn~Sg~Alk~~~~~l~~k~~~~~~~ 370 (470) T protein:vir:10 300 TGNGDNSGVDKLQID--IPVEARDDALKITRKNIFLFGQGIDP--A--NFE---SSNASGVAIKMLYSHLELKAAKTQTY 370 (470) T ss_pred CCCCcCceeEEEeec--CChHHHHHHHHHHHHHHHHHhCCCCC--C--ccc---cccchHHHHHHHHHHHHHHHHHHHHH Confidence 1 223344544332 33445666777788899988888853 1 111 223222222221111111111 Q ss_pred ---HHHH----HHHhhCcc-------ceeecccccCCCC Q lcl|Aclame:pro 316 ---RFRE----VNDWLGME-------VIRFKEYTLDNPE 340 (340) Q Consensus 316 ---~ie~----ln~~l~~~-------~~rf~~~~l~~~~ 340 (340) .|.+ +.+.++.. -+.|.+ .+...+ T Consensus 371 ~~~~l~~~~~~i~~~l~~~~~d~~~i~i~f~~-~~p~d~ 408 (470) T protein:vir:10 371 FEHAINELVRAIMRYLNFSDADKRHISQHWTR-TKVEDS 408 (470) T ss_pred HHHHHHHHHHHHHHHhcccCcccceeeEEecc-CCCCCH Confidence 1111 11222211 022321 111111 No 189 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=66.77 E-value=0.26 Score=23.77 Aligned_cols=306 Identities=11% Similarity=0.055 Sum_probs=106.4 Q ss_pred CCCCCCCcccccc-cCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMT-ASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNV 79 (340) Q Consensus 1 m~~~~~~~~~~~~-~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~ 79 (340) ...++.+-..... -.+...+.-+.-.-| .++-+. . ..-+|-...| ..++..+..+++...- ..+.+. T Consensus 33 ~~~~~~r~~~l~~YY~G~~~i~~~~~~~p------~~~~~~-~--~v~n~~~~iV--d~~a~rl~~~Gf~~~d-~~~~~~ 100 (504) T protein:vir:99 33 LVDRTPRNLLRASFYDGKYAIRQIGNLIP------PEYLRT-A--TVLGWSAKAV--DTLARRCNLESFVWPD-GDYGSI 100 (504) T ss_pred HHHHhHHHHHHHHHHhccccchhcccccc------HHHHHH-h--hccCcHHHHH--HHHHhhhccceeeCCC-CChhhH Confidence 1111111000000 000000000000000 000000 0 0001111111 1222222222221000 000000 Q ss_pred -HHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCcee-EEEEEecCcceeecccCc-----e---EEEEeCCceE Q lcl|Aclame:pro 80 -LASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQL-IKLLTSPAKYTRRGVDDS-----V---FWFVENFTQP 149 (340) Q Consensus 80 -~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~-~~L~pl~~~~~~~~~~~~-----~---~y~~~~~~~~ 149 (340) +-..+.-|.+. .....+..+.+.+|.||+.+..+..|++ ..+.+++|..+....+.. . +|....+++. T Consensus 101 ~l~~i~~~N~ld--~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~~~~~~~a~~~~~~d~~g~~ 178 (504) T protein:vir:99 101 GGPDVWDENFFA--TKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATGEWNSRRNAMDSLLSITSRDAEGHP 178 (504) T ss_pred HHHHHHHhcChh--hHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEEEEeCCCCceeEEEEEEEecCCCeE Confidence 11122233322 2345677889999999999999888875 456777876654322211 0 1111111111 Q ss_pred ---EEEcccc------------------------EEEecCCCCCCCcccccchh----hhHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 150 ---HEFAPDT------------------------VFHLLEPDINQEIYGLPEYL----SALNSAWLNESATLFRRKYYQN 198 (340) Q Consensus 150 ---~~~~~~d------------------------vih~r~~~~~~~~~G~sp~~----~a~~~i~~~~aa~~~~~~~f~N 198 (340) ..+.++. |++|.+..-.+..+|.|.+. .+..++.-...-..-...||.+ T Consensus 179 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~ 258 (504) T protein:vir:99 179 TGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSF 258 (504) T ss_pred EEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcc Confidence 0122222 55554332224557777543 2222222221111222333332 Q ss_pred cCCCceEEEeCCCCcC---HHHHHHHHHHHHHhcCcccccccccccCCcc-----ccccceeeccchhhHH-HHHHHHHh Q lcl|Aclame:pro 199 GAHAGYIMYVTDPAQS---ATDVESLRDAMRNSKGLGNFKNLFFYSPNGK-----PDGIKIVPLSEVATKD-DFFNIKKA 269 (340) Q Consensus 199 G~~p~gil~~~~~~~~---~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~-----~~g~~~~pl~~~~~d~-qf~e~~~~ 269 (340) |--++ .+..++ .++. .-...|+... ++++.+..+.+ ....++..+.. .++ -|++..+. T Consensus 259 ---p~r~i--~G~~~~~~~~~d~-~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~q~~~--~~l~~~~~~l~~ 325 (504) T protein:vir:99 259 ---PQLIL--LGADAKNFRNKDG-SMKPAWQIAL-----ARVFALPDDEDEPDAARARADVKQFPA--SSPQPHIEMLEQ 325 (504) T ss_pred ---hhhhh--ccCCccccccccc-cccchhhhhh-----hhhhcCCCccccccccCccceeeecCC--CChHHHHHHHHH Confidence 22222 221111 1110 1111222211 12222221111 01234444433 233 38899999 Q ss_pred hHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc---------------------- Q lcl|Aclame:pro 270 SAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFREVNDWLGME---------------------- 327 (340) Q Consensus 270 ~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~ln~~l~~~---------------------- 327 (340) ....|+++=++|++.+|+... ++.++.+.+. ..+.+++...+..++.++.- T Consensus 326 ~i~~~a~~t~~P~~~lG~~~~--~n~sSa~Ai~-----~~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~~~~~~~~~ 398 (504) T protein:vir:99 326 IAMMFSGETSIPVESLGFSNR--ANPTSADAYI-----ASREDLIAEAEGATDDWSPAFRRSMIRALAIKNGLDRIPPEW 398 (504) T ss_pred HHHHHHhhhCCCHHHhccccc--ccccHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccc Confidence 999999999999999997543 1112222221 22222222222211111100 Q ss_pred ---ceeecccccCCCC Q lcl|Aclame:pro 328 ---VIRFKEYTLDNPE 340 (340) Q Consensus 328 ---~~rf~~~~l~~~~ 340 (340) .++|.+-...+.- T Consensus 399 ~~~~v~w~d~~~~s~a 414 (504) T protein:vir:99 399 KTIDSKFRSPLYLSKA 414 (504) T ss_pred ccceeEecCCCccCHH Confidence 0223321111110 No 190 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=63.82 E-value=0.31 Score=23.37 Aligned_cols=289 Identities=11% Similarity=0.035 Sum_probs=104.9 Q ss_pred CCCCCCCccc--ccccC-------CccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhh Q lcl|Aclame:pro 1 MSKRKPRKAV--AMTAS-------APQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSS 71 (340) Q Consensus 1 m~~~~~~~~~--~~~~~-------~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~ 71 (340) ..++..+... +...- -......|-||+|..+. +.+.+ + T Consensus 27 ~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~----------~~~~~-------~---------------- 73 (440) T protein:vir:95 27 ILSGHRRLDDEKADYRVRHKWGGYISSFATGYVIGNPVSIG----------VMEGG-------S---------------- 73 (440) T ss_pred cccccccccccCCcceeecchHHHHHHhhhhheeccCceEe----------eCCCc-------c---------------- Confidence 1111111000 00000 00000112333332210 00000 0 Q ss_pred hhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc----e-----EEE Q lcl|Aclame:pro 72 PIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS----V-----FWF 142 (340) Q Consensus 72 ~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~----~-----~y~ 142 (340) ....+.+...+..|. .......++.+.+.+|.+|..+..+..|++ .+..++|..+.+..+.. . +|. T Consensus 74 --~~~~~~l~~~~~~n~--~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~ 148 (440) T protein:vir:95 74 --ADQLSTIKDIEWQND--INALNSDLAFDASVYGRAYEYHFRDKDKVD-RVVLISPLEMFVIRDLTVEQNIIAAVHLPI 148 (440) T ss_pred --HHHHHHHHHHHHhcC--HhHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 000000001111111 112345677889999999999999888875 35556665544332211 0 111 Q ss_pred EeCCceEEEEccc----------------------------cEEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 VENFTQPHEFAPD----------------------------TVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRK 194 (340) Q Consensus 143 ~~~~~~~~~~~~~----------------------------dvih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~ 194 (340) .........+.++ .|++++. ...|.|.+......+..-..+..-..+ T Consensus 149 ~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~lida~~~~~s~~~~ 223 (440) T protein:vir:95 149 YADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWN-----NRFRMGDYESEISLIDAYDAGQSDTAN 223 (440) T ss_pred ecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeC-----CCCCCCchhhhHHHHHHHHHHHHHHHH Confidence 1111001111222 2444442 224677776655555444444433344 Q ss_pred HHHccCCCceEEEeC--CCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHH Q lcl|Aclame:pro 195 YYQNGAHAGYIMYVT--DPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAA 272 (340) Q Consensus 195 ~f~NG~~p~gil~~~--~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~ 272 (340) ..+..+.|-.+++-. +...++++...+++.-.-... . +.... +.+....+++ +.-......+.+..+...+ T Consensus 224 ~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~-~---~~~~~-~~~~~~~~~~--lt~~~~~~~~~~~~~~l~~ 296 (440) T protein:vir:95 224 YMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLK-T---GISTT-GQQTTADASY--IYKQYDVNGTEAYKNRLAN 296 (440) T ss_pred HHHHhhcceeeeecccccCCCCccchhhhhhccceecc-c---ccccc-cCCCCcceeE--EeecCCHHHHHHHHHHHHH Confidence 445555666665421 122344544444332211100 0 00000 0111122333 3333344556777888889 Q ss_pred HHHHHhcCCHHHcccccccccccccHHH----------HHHHHHHHHHHHHHHHHHHHHHhh-Ccc------ceeecccc Q lcl|Aclame:pro 273 DLMDAHRVPFQLMGGKPENIGSLGDVEK----------VAKVFVRNELSPLQDRFREVNDWL-GME------VIRFKEYT 335 (340) Q Consensus 273 ~I~~~f~VPp~~lG~~~~~~~~~~n~e~----------~~~~f~~~~l~P~~~~ie~ln~~l-~~~------~~rf~~~~ 335 (340) .|...-++|..-.+-...+.++ --++. ..+..+...+.-+++.+..+-... +.+ -+.|.+.. T Consensus 297 ~i~~~s~~p~~~~~~~~~n~Sg-~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~ 375 (440) T protein:vir:95 297 DIHRFSRIPNLDDDRFNSTSSG-IALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGPVIEANKLTFTFHPNI 375 (440) T ss_pred HHHHHhCCcccccccccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccceEEeCCCC Confidence 9999999997543321111111 00111 011112222222222222211100 011 02233222 Q ss_pred cCCCC Q lcl|Aclame:pro 336 LDNPE 340 (340) Q Consensus 336 l~~~~ 340 (340) -.+.. T Consensus 376 p~~~~ 380 (440) T protein:vir:95 376 PQDVW 380 (440) T ss_pred CCCHH Confidence 11111 No 191 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=63.78 E-value=0.31 Score=23.36 Aligned_cols=296 Identities=11% Similarity=0.052 Sum_probs=102.3 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) +.++++++.. ..+..++ +..| |..+.+ ...+|+ +.-|+.+. +-..+.+.. T Consensus 74 ~~~~~~~~~~---~~~~~ki-~~n~--~k~Iv~--~~~~yl--------~g~p~~~~--------------~~d~~~~~~ 123 (511) T protein:vir:99 74 LVELTRRKEE---YMADNRV-AHDY--ASYISD--FINGYF--------LGNPIQYQ--------------DDDKDVLEA 123 (511) T ss_pred ccccCccccc---ccCccee-ecch--HHHHHH--HHHhhh--------cccCceee--------------cCchHHHHH Confidence 2211111000 0000000 0000 000000 000111 11111110 001111111 Q ss_pred HHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeC--C-- Q lcl|Aclame:pro 81 AST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVEN--F-- 146 (340) Q Consensus 81 ~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~--~-- 146 (340) +.. +.-| ........++.+.+.+|.+|..+.++..|++ .+..++|..+-+..+. . +||.+.. + T Consensus 124 l~~~~~~n--~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vyd~~~~~~~~~~vr~~~~~~~~~~~ 200 (511) T protein:vir:99 124 IEAFNDLN--DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTD 200 (511) T ss_pred HHHHHhhc--CHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCc Confidence 111 1112 1123456677889999999999999888863 5666666655432221 1 1222210 0 Q ss_pred -ce---EEEEccccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 -TQ---PHEFAPDTVFHLLEPDI-------------------------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 147 -~~---~~~~~~~dvih~r~~~~-------------------------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) +. ...+.++.|.+++.... .+...|.|.+......+..-..+..-..+.+. T Consensus 201 ~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~ 280 (511) T protein:vir:99 201 EDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMS 280 (511) T ss_pred cceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH Confidence 00 01233333333321100 01124677776665555543333333333333 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCC--ccccccceeeccchhhHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPN--GKPDGIKIVPLSEVATKDDFFNIKKASAADLM 275 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~--~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~ 275 (340) ..+.|-.++. .....+.++....++.- .-+.........+ ....+.+++.+.-......+.+..+...+.|+ T Consensus 281 ~~~~~~lv~~-G~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~ 354 (511) T protein:vir:99 281 DLNDAMLLIK-GNLNLDPVEVRKQKEAN-----VLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIH 354 (511) T ss_pred Hhhchhhhhc-cCcccCchhhccccccc-----ceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHH Confidence 3344444442 11222333322222110 0000000000000 01233445545444445566777788889999 Q ss_pred HHhcCCHHHcccccccccccccHHHHHHHH-------------HHHHHHHHHHHHHHHHHhhCc-----c----ceeecc Q lcl|Aclame:pro 276 DAHRVPFQLMGGKPENIGSLGDVEKVAKVF-------------VRNELSPLQDRFREVNDWLGM-----E----VIRFKE 333 (340) Q Consensus 276 ~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f-------------~~~~l~P~~~~ie~ln~~l~~-----~----~~rf~~ 333 (340) ..-++|....+-..++ . | .......+ +...|.-.++.|.++-...+. + .+.|.+ T Consensus 355 ~~s~~P~~~~~~~~gn-~--S-g~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~ 430 (511) T protein:vir:99 355 MFTNTPNMKDDNFSGT-Q--S-GEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNR 430 (511) T ss_pred HHhCCccccccccccc-c--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCC Confidence 9999997544321111 1 1 11111111 111111111111111000010 0 122321 Q ss_pred cccCCCC Q lcl|Aclame:pro 334 YTLDNPE 340 (340) Q Consensus 334 ~~l~~~~ 340 (340) . +...+ T Consensus 431 ~-~p~n~ 436 (511) T protein:vir:99 431 N-LPKSL 436 (511) T ss_pred C-CCcCH Confidence 1 11111 No 192 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=62.61 E-value=0.33 Score=23.21 Aligned_cols=334 Identities=11% Similarity=0.062 Sum_probs=146.5 Q ss_pred CCCC--------CCCc---ccccccCCccce----EEE---ECCCce-eecCcc-hhhhee-eeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKR--------KPRK---AVAMTASAPQKM----EAF---TFGEPV-PVLDKR-DILDYV-ECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~--------~~~~---~~~~~~~~~~~~----~~~---~f~~p~-~~~~~~-~~~~~~-~~~~~~~~~~~pv~~~~l 59 (340) |.-. |..+ ++..-+.+.+.+ .+| .++.-- .+-+.. +..+-+ |+-+--+|+...+++.-| T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 4322 2111 110001111111 011 111100 000000 011110 111112344444443211 Q ss_pred hh-hhhcchhh--hhh-hhh-----hhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEE-EecCCce------eEEE Q lcl|Aclame:pro 60 AK-SLRSAVHH--SSP-IYV-----KRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQ-RHSVTGQ------LIKL 123 (340) Q Consensus 60 ~~-~~r~~~~~--~~~-i~~-----k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i-~r~~~G~------~~~L 123 (340) -- .++-++-. +.+ +.. |.-......-..++-..+.++.+..++-+-|.+|+-+ .|..++- +.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:10 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 10 01101000 001 000 1111111122334555677888899999999999654 4444442 2222 Q ss_pred EE-ecCcceeecccCceEEEEeCCceEEEEcccc--EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 124 LT-SPAKYTRRGVDDSVFWFVENFTQPHEFAPDT--VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGA 200 (340) Q Consensus 124 ~p-l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~d--vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~ 200 (340) |. +....+... .++.--....+|..++|..+- ++-+=.++|..-.+--||+.+++.++.--...++-.++.-+.-. T Consensus 161 W~vvs~~Ei~~~-~~~~~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl 239 (639) T protein:vir:10 161 WYAVTREEIKSK-AGETAEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRV 239 (639) T ss_pred eeeeeHHHhccc-CCCeeEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHH Confidence 32 333333322 222221222355666665543 33333566667778889999999888877777777666666666 Q ss_pred CCceEEEeCCCCc----C--------------------HHHHHHHHHHH----HHhc---Cccccccccccc-CCccccc Q lcl|Aclame:pro 201 HAGYIMYVTDPAQ----S--------------------ATDVESLRDAM----RNSK---GLGNFKNLFFYS-PNGKPDG 248 (340) Q Consensus 201 ~p~gil~~~~~~~----~--------------------~e~~~~l~~~~----~~~~---g~~n~~~~~vl~-~~~~~~g 248 (340) .-.|||.++.... . .-..+.+...+ .... +...+--++|+. |+..-++ T Consensus 240 ~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~ 319 (639) T protein:vir:10 240 MNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEK 319 (639) T ss_pred hhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcC Confidence 6666766543110 0 01122333333 2221 222233333332 3222233 Q ss_pred cceeeccchh-hHHHHHHHHHhhHHHHHHHhcCCHHH-cccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH-hh Q lcl|Aclame:pro 249 IKIVPLSEVA-TKDDFFNIKKASAADLMDAHRVPFQL-MGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VND-WL 324 (340) Q Consensus 249 ~~~~pl~~~~-~d~qf~e~~~~~~~~I~~~f~VPp~~-lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~-~l 324 (340) ++.|.... -+..-+.+|+-....+|...-|||.. +|+... |.=+.-+....=++.-|.|.+..|++ |.+ +| T Consensus 320 --ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~---NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~L 394 (639) T protein:vir:10 320 --VQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKG---NHWSAWAIGDEDVQLHIKPVMDLICQAIYNDIL 394 (639) T ss_pred --eeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccc---cceEEEEecccceeeecchhHHHHHHHHHhhHH Confidence 44444433 34446789999999999999999975 476432 22223344444455668888887765 433 32 Q ss_pred -------Ccc----ceeeccccc----CCCC Q lcl|Aclame:pro 325 -------GME----VIRFKEYTL----DNPE 340 (340) Q Consensus 325 -------~~~----~~rf~~~~l----~~~~ 340 (340) |-+ ++=|+...| |.+| T Consensus 395 rp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~d 425 (639) T protein:vir:10 395 TPLLAREGIDPTKYILWYDASGLTSDPDLSD 425 (639) T ss_pred HHHHHHhCCCHHHhEeeecCcccccCCCCcH Confidence 211 222433322 1122 No 193 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=62.61 E-value=0.33 Score=23.21 Aligned_cols=334 Identities=11% Similarity=0.062 Sum_probs=146.5 Q ss_pred CCCC--------CCCc---ccccccCCccce----EEE---ECCCce-eecCcc-hhhhee-eeeecCchhhcccchHHh Q lcl|Aclame:pro 1 MSKR--------KPRK---AVAMTASAPQKM----EAF---TFGEPV-PVLDKR-DILDYV-ECISNGKWYEPPVSFSGL 59 (340) Q Consensus 1 m~~~--------~~~~---~~~~~~~~~~~~----~~~---~f~~p~-~~~~~~-~~~~~~-~~~~~~~~~~~pv~~~~l 59 (340) |.-. |..+ ++..-+.+.+.+ .+| .++.-- .+-+.. +..+-+ |+-+--+|+...+++.-| T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 4322 2111 110001111111 011 111100 000000 011110 111112344444443211 Q ss_pred hh-hhhcchhh--hhh-hhh-----hhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEE-EecCCce------eEEE Q lcl|Aclame:pro 60 AK-SLRSAVHH--SSP-IYV-----KRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQ-RHSVTGQ------LIKL 123 (340) Q Consensus 60 ~~-~~r~~~~~--~~~-i~~-----k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i-~r~~~G~------~~~L 123 (340) -- .++-++-. +.+ +.. |.-......-..++-..+.++.+..++-+-|.+|+-+ .|..++- +.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:97 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 10 01101000 001 000 1111111122334555677888899999999999654 4444442 2222 Q ss_pred EE-ecCcceeecccCceEEEEeCCceEEEEcccc--EEEecCCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccC Q lcl|Aclame:pro 124 LT-SPAKYTRRGVDDSVFWFVENFTQPHEFAPDT--VFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGA 200 (340) Q Consensus 124 ~p-l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~d--vih~r~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~ 200 (340) |. +....+... .++.--....+|..++|..+- ++-+=.++|..-.+--||+.+++.++.--...++-.++.-+.-. T Consensus 161 W~vvs~~Ei~~~-~~~~~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl 239 (639) T protein:vir:97 161 WYAVTREEIKSK-AGETAEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRV 239 (639) T ss_pred eeeeeHHHhccc-CCCeeEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHH Confidence 32 333333322 222221222355666665543 33333566667778889999999888877777777666666666 Q ss_pred CCceEEEeCCCCc----C--------------------HHHHHHHHHHH----HHhc---Cccccccccccc-CCccccc Q lcl|Aclame:pro 201 HAGYIMYVTDPAQ----S--------------------ATDVESLRDAM----RNSK---GLGNFKNLFFYS-PNGKPDG 248 (340) Q Consensus 201 ~p~gil~~~~~~~----~--------------------~e~~~~l~~~~----~~~~---g~~n~~~~~vl~-~~~~~~g 248 (340) .-.|||.++.... . .-..+.+...+ .... +...+--++|+. |+..-++ T Consensus 240 ~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~ 319 (639) T protein:vir:97 240 MNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEK 319 (639) T ss_pred hhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcC Confidence 6666766543110 0 01122333333 2221 222233333332 3222233 Q ss_pred cceeeccchh-hHHHHHHHHHhhHHHHHHHhcCCHHH-cccccccccccccHHHHHHHHHHHHHHHHHHHHHH-HHH-hh Q lcl|Aclame:pro 249 IKIVPLSEVA-TKDDFFNIKKASAADLMDAHRVPFQL-MGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VND-WL 324 (340) Q Consensus 249 ~~~~pl~~~~-~d~qf~e~~~~~~~~I~~~f~VPp~~-lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-ln~-~l 324 (340) ++.|.... -+..-+.+|+-....+|...-|||.. +|+... |.=+.-+....=++.-|.|.+..|++ |.+ +| T Consensus 320 --ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~---NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~L 394 (639) T protein:vir:97 320 --VQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKG---NHWSAWAIGDEDVQLHIKPVMDLICQAIYNDIL 394 (639) T ss_pred --eeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccc---cceEEEEecccceeeecchhHHHHHHHHHhhHH Confidence 44444433 34446789999999999999999975 476432 22223344444455668888887765 433 32 Q ss_pred -------Ccc----ceeeccccc----CCCC Q lcl|Aclame:pro 325 -------GME----VIRFKEYTL----DNPE 340 (340) Q Consensus 325 -------~~~----~~rf~~~~l----~~~~ 340 (340) |-+ ++=|+...| |.+| T Consensus 395 rp~Le~eGvDp~kYvvW~DaS~Lt~dPd~~d 425 (639) T protein:vir:97 395 TPLLAREGIDPTKYILWYDASGLTSDPDLSD 425 (639) T ss_pred HHHHHHhCCCHHHhEeeecCcccccCCCCcH Confidence 211 222433322 1122 No 194 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=55.29 E-value=0.48 Score=22.32 Aligned_cols=298 Identities=11% Similarity=0.011 Sum_probs=106.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) +.++++++ ....+..++ +..| |..+.+ ....|+ ..-|+.+. +-....+.. T Consensus 74 ~~~~~~~~---~~~~~~~ki-~~n~--~k~Iv~--~~~~yl--------~g~p~~~~--------------~~d~~~~~~ 123 (511) T protein:vir:10 74 LVELTRRK---EEYMADNRV-AHDY--ASYISD--FINGYF--------LGNPIQYQ--------------DDDKDVLEA 123 (511) T ss_pred ccccCccc---ccccCccee-ecch--HHHHHH--HHhhhh--------cccCceee--------------cCchHHHHH Confidence 11111100 000000000 0000 000000 000110 11111110 001111111 Q ss_pred HHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c-----eEEEEeC--C-- Q lcl|Aclame:pro 81 AST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S-----VFWFVEN--F-- 146 (340) Q Consensus 81 ~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~-----~~y~~~~--~-- 146 (340) +.. +.-| ........++.+.+.+|.||..+.++..|++ .+..++|..+-+..+. . +||.... + T Consensus 124 l~~~~~~n--~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~vr~~~~~~~d~~~ 200 (511) T protein:vir:10 124 IEAFNDLN--DVESHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTD 200 (511) T ss_pred HHHHHhhc--CHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEEEEEeeecccCc Confidence 111 1111 1123455677889999999999999888863 4666666554432211 0 1222210 0 Q ss_pred -ceE---EEEccccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 -TQP---HEFAPDTVFHLLEPDI-------------------------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 147 -~~~---~~~~~~dvih~r~~~~-------------------------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) +.. ..+.++.|.++..... .+.-.|.|.+......++.-..+..-..+.+. T Consensus 201 ~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~d~~~S~~~~~~~ 280 (511) T protein:vir:10 201 EDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMS 280 (511) T ss_pred cceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH Confidence 000 1123333333211000 01125777777666666654444433444555 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHH-hcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRN-SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMD 276 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~ 276 (340) ..+.|-.++.- ....+.++....++.-.. ...........+ +...+.++..+.-......+.+..+...+.|+. T Consensus 281 ~~~~~~lv~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~ 355 (511) T protein:vir:10 281 DLNDAMLLIKG-NLNLDPVEVRKQKEANVLFLEPTVYADSEGR----ETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 355 (511) T ss_pred HhhCceeeeec-cccCCchhhccchhccceecccccccccccc----cCCCCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 55566555542 122233333222211100 000000000000 112234455454444556677778888899999 Q ss_pred HhcCCHHHcccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhhCccceeecccccCCCC Q lcl|Aclame:pro 277 AHRVPFQLMGGKPENIGSLGDVE----------KVAKVFVRNELSPLQDRFREVNDWLGMEVIRFKEYTLDNPE 340 (340) Q Consensus 277 ~f~VPp~~lG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~l~~~~~rf~~~~l~~~~ 340 (340) .-++|..-.+-...+. +.-.+. ...+.++...|.-.++.+.++-...+. ...+++..+.+ T Consensus 356 ~s~~P~~~~~~~~~n~-Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~---~~~~~d~~~i~ 425 (511) T protein:vir:10 356 FTNTPNMKDDNFSGTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRS---IDANKDFNTVR 425 (511) T ss_pred HhCCcccccccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---cccccccceee Confidence 9999875432211111 100010 011112222222222222221111110 01112222222 No 195 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=52.79 E-value=0.55 Score=22.03 Aligned_cols=305 Identities=12% Similarity=0.087 Sum_probs=95.2 Q ss_pred CCCCCC----------------Ccccccc-cCCccceEEEECCCce--eecCcchhhheeee---eecCchhhcccchHH Q lcl|Aclame:pro 1 MSKRKP----------------RKAVAMT-ASAPQKMEAFTFGEPV--PVLDKRDILDYVEC---ISNGKWYEPPVSFSG 58 (340) Q Consensus 1 m~~~~~----------------~~~~~~~-~~~~~~~~~~~f~~p~--~~~~~~~~~~~~~~---~~~~~~~~~pv~~~~ 58 (340) ||.--. +-..-.. -.+...+..+.-.-|. ..+.+.-..++..+ ...+..+-.||...+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~ 80 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCC Confidence 111110 0000000 0000000000000000 00000000000000 000001111111100 Q ss_pred hhhhhhcchhhhhhhhhhhh-hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC Q lcl|Aclame:pro 59 LAKSLRSAVHHSSPIYVKRN-VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD 137 (340) Q Consensus 59 l~~~~r~~~~~~~~i~~k~n-~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~ 137 (340) .-..+.. .+...+.-|.+ ......++.+.+.+|.||..+.++..|.+ .+..++|..+.+..+. T Consensus 81 -------------~~d~~~~~~~~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~d~~g~~-~i~~~~p~~~~~i~d~ 144 (456) T protein:vir:10 81 -------------SADSDLALRARRIWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDP 144 (456) T ss_pred -------------CCCcchHHHHHHHHHhcCh--hhHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEEccceeEEEEcC Confidence 0000000 00011112211 12345567888999999999999888865 3555666554332221 Q ss_pred c---------eEEEEeCCce---------------------------EEEEcccc------EEEecCCCC---CCCcccc Q lcl|Aclame:pro 138 S---------VFWFVENFTQ---------------------------PHEFAPDT------VFHLLEPDI---NQEIYGL 172 (340) Q Consensus 138 ~---------~~y~~~~~~~---------------------------~~~~~~~d------vih~r~~~~---~~~~~G~ 172 (340) . ++|...+++. ......+. .-|.-...| .....|+ T Consensus 145 ~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~ 224 (456) T protein:vir:10 145 LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGM 224 (456) T ss_pred CCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCC Confidence 1 1111111000 00000000 001100000 0112477 Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC---CCcCHHHHHHH--HHHHHHhcCcccccccccccCCcccc Q lcl|Aclame:pro 173 PEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD---PAQSATDVESL--RDAMRNSKGLGNFKNLFFYSPNGKPD 247 (340) Q Consensus 173 sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~---~~~~~e~~~~l--~~~~~~~~g~~n~~~~~vl~~~~~~~ 247 (340) |.++.....++....+..-.......-+.|--++.-.+ ...++ .-..+ ...|+... +.++.+.+ T Consensus 225 gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~-~g~~~~~~~~~~~~~-----~~~~~~~~----- 293 (456) T protein:vir:10 225 GEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDE-NGNAIDYASIFEAAP-----GALWELPP----- 293 (456) T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccc-cccccchhhhhhhhc-----cccccCCC----- Confidence 77666554444333322222222222222222221110 01111 11111 12222221 22333332 Q ss_pred ccceeeccchhhHH-HHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH----H----H Q lcl|Aclame:pro 248 GIKIVPLSEVATKD-DFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR----F----R 318 (340) Q Consensus 248 g~~~~pl~~~~~d~-qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~----i----e 318 (340) +.++..+.. .+. .|++..+....+|+++=++|++.+|....+. + .+. ..+....|.=.+.. | + T Consensus 294 ~~~~~q~~~--~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~-S---g~A--i~~~~~~l~~k~~~~~~~f~~~l~ 365 (456) T protein:vir:10 294 GVDIWESQA--NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-S---AEG--AHNIEKGFLFKCEDRLSIAKIGLE 365 (456) T ss_pred CcceEEecc--cChhHHHHHHHHHHHHHHhccCCChHHhcccccCh-H---HHH--HHHHHHHHHHHHHHHHHHHHHHHH Confidence 344544432 232 3889999999999999999999997532221 1 111 11221111111111 1 1 Q ss_pred HHHHhh----Ccc-----ceeecccccCCCC Q lcl|Aclame:pro 319 EVNDWL----GME-----VIRFKEYTLDNPE 340 (340) Q Consensus 319 ~ln~~l----~~~-----~~rf~~~~l~~~~ 340 (340) ++.+.+ |.. -+.|.+-...+.- T Consensus 366 ~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~ 396 (456) T protein:vir:10 366 AILVKALQIEGESVEDTVDVSFESPDRVTLG 396 (456) T ss_pred HHHHHHHHhcCCCcccceeEEecCCCCcCHH Confidence 111111 110 0122211100000 No 196 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=52.79 E-value=0.55 Score=22.03 Aligned_cols=305 Identities=12% Similarity=0.087 Sum_probs=95.2 Q ss_pred CCCCCC----------------Ccccccc-cCCccceEEEECCCce--eecCcchhhheeee---eecCchhhcccchHH Q lcl|Aclame:pro 1 MSKRKP----------------RKAVAMT-ASAPQKMEAFTFGEPV--PVLDKRDILDYVEC---ISNGKWYEPPVSFSG 58 (340) Q Consensus 1 m~~~~~----------------~~~~~~~-~~~~~~~~~~~f~~p~--~~~~~~~~~~~~~~---~~~~~~~~~pv~~~~ 58 (340) ||.--. +-..-.. -.+...+..+.-.-|. ..+.+.-..++..+ ...+..+-.||...+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~ 80 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGG 80 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCC Confidence 111110 0000000 0000000000000000 00000000000000 000001111111100 Q ss_pred hhhhhhcchhhhhhhhhhhh-hHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC Q lcl|Aclame:pro 59 LAKSLRSAVHHSSPIYVKRN-VLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD 137 (340) Q Consensus 59 l~~~~r~~~~~~~~i~~k~n-~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~ 137 (340) .-..+.. .+...+.-|.+ ......++.+.+.+|.||..+.++..|.+ .+..++|..+.+..+. T Consensus 81 -------------~~d~~~~~~~~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~d~~g~~-~i~~~~p~~~~~i~d~ 144 (456) T protein:vir:10 81 -------------SADSDLALRARRIWRDNRM--DSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDP 144 (456) T ss_pred -------------CCCcchHHHHHHHHHhcCh--hhHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEEccceeEEEEcC Confidence 0000000 00011112211 12345567888999999999999888865 3555666554332221 Q ss_pred c---------eEEEEeCCce---------------------------EEEEcccc------EEEecCCCC---CCCcccc Q lcl|Aclame:pro 138 S---------VFWFVENFTQ---------------------------PHEFAPDT------VFHLLEPDI---NQEIYGL 172 (340) Q Consensus 138 ~---------~~y~~~~~~~---------------------------~~~~~~~d------vih~r~~~~---~~~~~G~ 172 (340) . ++|...+++. ......+. .-|.-...| .....|+ T Consensus 145 ~~~~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~ 224 (456) T protein:vir:10 145 LQPWRIRAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGM 224 (456) T ss_pred CCCcceEEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCC Confidence 1 1111111000 00000000 001100000 0112477 Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCC---CCcCHHHHHHH--HHHHHHhcCcccccccccccCCcccc Q lcl|Aclame:pro 173 PEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD---PAQSATDVESL--RDAMRNSKGLGNFKNLFFYSPNGKPD 247 (340) Q Consensus 173 sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~---~~~~~e~~~~l--~~~~~~~~g~~n~~~~~vl~~~~~~~ 247 (340) |.++.....++....+..-.......-+.|--++.-.+ ...++ .-..+ ...|+... +.++.+.+ T Consensus 225 gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~-~g~~~~~~~~~~~~~-----~~~~~~~~----- 293 (456) T protein:vir:10 225 GEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDE-NGNAIDYASIFEAAP-----GALWELPP----- 293 (456) T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccc-cccccchhhhhhhhc-----cccccCCC----- Confidence 77666554444333322222222222222222221110 01111 11111 12222221 22333332 Q ss_pred ccceeeccchhhHH-HHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH----H----H Q lcl|Aclame:pro 248 GIKIVPLSEVATKD-DFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR----F----R 318 (340) Q Consensus 248 g~~~~pl~~~~~d~-qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~----i----e 318 (340) +.++..+.. .+. .|++..+....+|+++=++|++.+|....+. + .+. ..+....|.=.+.. | + T Consensus 294 ~~~~~q~~~--~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~-S---g~A--i~~~~~~l~~k~~~~~~~f~~~l~ 365 (456) T protein:vir:10 294 GVDIWESQA--NDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQ-S---AEG--AHNIEKGFLFKCEDRLSIAKIGLE 365 (456) T ss_pred CcceEEecc--cChhHHHHHHHHHHHHHHhccCCChHHhcccccCh-H---HHH--HHHHHHHHHHHHHHHHHHHHHHHH Confidence 344544432 232 3889999999999999999999997532221 1 111 11221111111111 1 1 Q ss_pred HHHHhh----Ccc-----ceeecccccCCCC Q lcl|Aclame:pro 319 EVNDWL----GME-----VIRFKEYTLDNPE 340 (340) Q Consensus 319 ~ln~~l----~~~-----~~rf~~~~l~~~~ 340 (340) ++.+.+ |.. -+.|.+-...+.- T Consensus 366 ~~~rl~~~~~g~~~~~~~~v~w~~~~~~~~~ 396 (456) T protein:vir:10 366 AILVKALQIEGESVEDTVDVSFESPDRVTLG 396 (456) T ss_pred HHHHHHHHhcCCCcccceeEEecCCCCcCHH Confidence 111111 110 0122211100000 No 197 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=48.22 E-value=0.68 Score=21.51 Aligned_cols=281 Identities=14% Similarity=0.115 Sum_probs=96.5 Q ss_pred CCCCCCCcccccccCCccce------------EEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM------------EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH 68 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~------------~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~ 68 (340) +.++..+... ..+..++ ..|.||+|..+. T Consensus 57 ~~~~~~~~~~---~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~------------------------------------ 97 (506) T protein:vir:94 57 LDKQSRRHED---GKADHRATHSFAKYIADFQTSYSVGNPINVK------------------------------------ 97 (506) T ss_pred cccccccccc---cCCcceeecchHHHHHHHhhhhhcccCceee------------------------------------ Confidence 1111111000 0000000 012222221110 Q ss_pred hhhhhhhhhhhHHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c----- Q lcl|Aclame:pro 69 HSSPIYVKRNVLAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S----- 138 (340) Q Consensus 69 ~~~~i~~k~n~~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~----- 138 (340) +-..+.+..+.. +.-|.+ ......+..+.+.+|.+|..+..+..|++ .+..++|..+-+..+. . T Consensus 98 ---~~d~~~~~~l~~~~~~N~~--~~~~~~~~~~~~~~G~a~~~v~~ded~~~-~i~~~~p~~~~~v~dd~~~~~~~~~v 171 (506) T protein:vir:94 98 ---LPDDGSNSGFDTFNKANDV--DAENYDLFLDMSRYGRAYEYVYRGEDNEE-HLAKLDPLDTFVIYSTDVDPKPIMAV 171 (506) T ss_pred ---cCcchHHHHHHHHHhccCH--hHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEecCCCCCceEEEE Confidence 111111111211 122211 13355677888999999999999888864 4555666554332211 0 Q ss_pred eEEEEeC--Cce-------EEEEccc-------------------------cEEEecCCCCCCCcccccchhhhHHHHHH Q lcl|Aclame:pro 139 VFWFVEN--FTQ-------PHEFAPD-------------------------TVFHLLEPDINQEIYGLPEYLSALNSAWL 184 (340) Q Consensus 139 ~~y~~~~--~~~-------~~~~~~~-------------------------dvih~r~~~~~~~~~G~sp~~~a~~~i~~ 184 (340) ++|.... +.. ...+.+. .|++++.. -.|.|.+......++. T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~-----~~~~sd~e~~~~liDa 246 (506) T protein:vir:94 172 RYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKNS-----NFRLGDFENVLPLIDL 246 (506) T ss_pred EEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecCC-----CCCCCchhhhHHHHHH Confidence 1111110 000 0001111 13333321 1245555444333322 Q ss_pred HHHHHHHHHHHHHccCCCceEEEeC---------------------CCCcCHHHHHHHHHHHHHhcCcccccccccccCC Q lcl|Aclame:pro 185 NESATLFRRKYYQNGAHAGYIMYVT---------------------DPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPN 243 (340) Q Consensus 185 ~~aa~~~~~~~f~NG~~p~gil~~~---------------------~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~ 243 (340) -..+..-..+..+..+.|-.+++-. ......+..+.++ .++. .+++.+.++ T Consensus 247 ~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~ 318 (506) T protein:vir:94 247 YDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIK-EMKD-------ANMLLLKSG 318 (506) T ss_pred HHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHh-hhhh-------cCeeeeccc Confidence 2221111111111112222222100 0000111111111 1111 122233322 Q ss_pred cc----ccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHH----------HHHHHHHHHH Q lcl|Aclame:pro 244 GK----PDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVE----------KVAKVFVRNE 309 (340) Q Consensus 244 ~~----~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e----------~~~~~f~~~~ 309 (340) +. ..+.++.-|........+.+..+.....|...-++|..-.+-...+ .+...+. ...+.++... T Consensus 319 ~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n-~Sg~Aik~~~~~l~~k~~~k~~~~~~~ 397 (506) T protein:vir:94 319 MTVNGTQTSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFASN-SSGVAMQYKVLGTVELASTKRRMFERG 397 (506) T ss_pred ccccCccccccceeeeecCCHHHHHHHHHHHHHHHHHHhCcccccccccccc-chHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 21 1223344444444566677778888999999999997432111111 1111011 1122233334 Q ss_pred HHHHHHHHHHHHHhhCc----c----ceeecccccCCCC Q lcl|Aclame:pro 310 LSPLQDRFREVNDWLGM----E----VIRFKEYTLDNPE 340 (340) Q Consensus 310 l~P~~~~ie~ln~~l~~----~----~~rf~~~~l~~~~ 340 (340) |+..++.+.++-...+. + -+.|.+.-..+.. T Consensus 398 l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~~ 436 (506) T protein:vir:94 398 LYARYQIISDIENSIHGDWTFDPQELTFTFRDNLPADNI 436 (506) T ss_pred HHHHHHHHHHHHHhcCCccccccccceEEeCCCCCcCHH Confidence 44444333332111111 1 1334322211111 No 198 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=47.22 E-value=0.71 Score=21.40 Aligned_cols=283 Identities=11% Similarity=0.009 Sum_probs=106.7 Q ss_pred CCCCCCCcccccccCCccce------------EEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM------------EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVH 68 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~------------~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~ 68 (340) +.++++++.. ..+..++ ..|.||.|..+. T Consensus 74 ~~~~~~~~~~---~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~------------------------------------ 114 (511) T protein:vir:96 74 LVELTRRKEE---YMADNRVAHDYASYISDFINGYFLGNPIQYQ------------------------------------ 114 (511) T ss_pred ccccCcCccc---ccCcceeecchHHHHHHHHHhhhccCCceee------------------------------------ Confidence 2222111100 0000000 012222222110 Q ss_pred hhhhhhhhhhhHHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccC----c----- Q lcl|Aclame:pro 69 HSSPIYVKRNVLAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDD----S----- 138 (340) Q Consensus 69 ~~~~i~~k~n~~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~----~----- 138 (340) +-....+..+.. +.-| ........++.+.+.+|.+|..+.++..|+ +.+..++|..+-+..+. . T Consensus 115 ---~~~~~~~~~l~~~~~~n--~~~~~~~~~~~~~~i~G~a~~~vy~ded~~-~~i~~~~p~~~~~vydd~~~~~~~~~v 188 (511) T protein:vir:96 115 ---DDDKDVLEAIEAFNDLN--DVESHNRSLGLDLSIYGKAYELMIRNQDDE-TRLYKSDAMSTFVIYDNTIERNSIAGV 188 (511) T ss_pred ---cCchHHHHHHHHHHhhc--CHHHHHHHHHHHHHhcCeeEEEEEeCCCCc-eEEEEEccceeEEEEcCCCCCceEEEE Confidence 001111111111 1111 122345667788999999999999988886 45666777655433221 1 Q ss_pred eEEEEeC--C---ceE---EEEccccEEEecCCCC-------------------------CCCcccccchhhhHHHHHHH Q lcl|Aclame:pro 139 VFWFVEN--F---TQP---HEFAPDTVFHLLEPDI-------------------------NQEIYGLPEYLSALNSAWLN 185 (340) Q Consensus 139 ~~y~~~~--~---~~~---~~~~~~dvih~r~~~~-------------------------~~~~~G~sp~~~a~~~i~~~ 185 (340) +||.... + +.. ..+.++.|.++..-+. .+.-.|.|.+......+..- T Consensus 189 r~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:96 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHH Confidence 1222210 0 000 1123333333221000 01125777777766666654 Q ss_pred HHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHH-HhcCcccccccccccCCccccccceeeccchhhHHHHH Q lcl|Aclame:pro 186 ESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMR-NSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFF 264 (340) Q Consensus 186 ~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~-~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~ 264 (340) ..+..-..+.+...+.|-.++.- ....+.++....++... ....... ..........+.++..+.-......+. T Consensus 269 d~~~S~~~~~~~~~~~~~lv~~g-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~e 343 (511) T protein:vir:96 269 DNAESDTANYMSDLNDAMLLIKG-NLNLDPVEVRKQKEANVLFLEPTVY----ADSEGRETEGSVDGGYIYKQYDVQGTE 343 (511) T ss_pred HHHHHHHHHHHHHhhCceeeeec-CccCCchhhcccccccceecccccc----cccccccCCCCcceeEEeecCCHHHHH Confidence 44444444455555556555542 12223333222211100 0000000 000000011233444444334456677 Q ss_pred HHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCccceee Q lcl|Aclame:pro 265 NIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK-------------VFVRNELSPLQDRFREVNDWLGMEVIRF 331 (340) Q Consensus 265 e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~l~~~~~rf 331 (340) +..+...+.|...-++|..-.+-.. ++-| .+.... .++...|.-.++.|.++-...+.. . T Consensus 344 ~~~~~L~~~I~~~s~~p~~~~~~~~---~n~S-g~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~---~ 416 (511) T protein:vir:96 344 AYKDRLNSDIHMFTNTPNMKDDNFS---GTQS-GEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSI---D 416 (511) T ss_pred HHHHHHHHHHHHHhCCccccccccc---ccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc---c Confidence 7888888999999999975432211 1111 111111 111222222222222211111100 0 Q ss_pred cccccCCCC Q lcl|Aclame:pro 332 KEYTLDNPE 340 (340) Q Consensus 332 ~~~~l~~~~ 340 (340) ..++..+.+ T Consensus 417 ~~~d~~~i~ 425 (511) T protein:vir:96 417 ANKDFNTVR 425 (511) T ss_pred cccccccce Confidence 112222222 No 199 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=44.70 E-value=0.8 Score=21.12 Aligned_cols=286 Identities=10% Similarity=0.093 Sum_probs=115.6 Q ss_pred CCCC------CCC--cccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhh Q lcl|Aclame:pro 1 MSKR------KPR--KAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSP 72 (340) Q Consensus 1 m~~~------~~~--~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~ 72 (340) ...+ +++ .+..-++.-......+.|++|..+.-. T Consensus 57 l~~~~~~~~~~~~~~~slnl~~~i~~~~A~ll~~e~~~i~~~-------------------------------------- 98 (505) T protein:vir:79 57 VTHKNSYGDTQKHELQSVNVTKLASAKLASLIFNEQCQVTVS-------------------------------------- 98 (505) T ss_pred ccccccCCCccccceeecchHHHHHHHHHhhhcCCCceeecC-------------------------------------- Confidence 1000 000 000000000011111233333221000 Q ss_pred hhhhhhhHHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeec----------------- Q lcl|Aclame:pro 73 IYVKRNVLAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRG----------------- 134 (340) Q Consensus 73 i~~k~n~~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~----------------- 134 (340) ....+..+.. +..|. ....+...+.+.+..|.+++.+..+. |+ +.+..++|..+-+. T Consensus 99 -d~~~~e~l~~i~~~n~--f~~~~~~~~e~a~a~G~~~~k~~~D~-~~-~~i~~v~ad~~~P~~~d~~~~~~~a~~~~~~ 173 (505) T protein:vir:79 99 -DETANDFLDDVFQQND--FYTTFEEKLEEWIALGSGCVRPYVDS-GK-IKLAWATADQVYPLQADTNQVNELAIASRTT 173 (505) T ss_pred -ChHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcCCeEEEEEEeC-Cc-eEEEEEcCCeeEEEEEcCCCeEEEEEEEEEE Confidence 0001111100 11110 12345666777778888887776653 33 23333443322110 Q ss_pred ---ccCceEEE-------------Ee-----C-C----ceEEEEc--------cc----------cEEEecCCCCCC--- Q lcl|Aclame:pro 135 ---VDDSVFWF-------------VE-----N-F----TQPHEFA--------PD----------TVFHLLEPDINQ--- 167 (340) Q Consensus 135 ---~~~~~~y~-------------~~-----~-~----~~~~~~~--------~~----------dvih~r~~~~~~--- 167 (340) .+...||. +. . + |..+.+. .+ -+.||+.+.++. T Consensus 174 ~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~ 253 (505) T protein:vir:79 174 EVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHPLFAFYRNKGANNKNF 253 (505) T ss_pred EecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCcceEEEecCCccccccc Confidence 01111221 00 0 0 1110000 00 134665443332 Q ss_pred -CcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceE----EEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccC Q lcl|Aclame:pro 168 -EIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYI----MYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSP 242 (340) Q Consensus 168 -~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gi----l~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~ 242 (340) ..+|+|.+..+...+......-.-..+-|+.|-+.-.| |.. ++....+....-...+ +....++... T Consensus 254 ~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~-~~~~~~~~~~~~~~~f------d~~~~~y~~~- 325 (505) T protein:vir:79 254 TSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKT-GSSYGGQASETHPPMF------DPDETVYQAM- 325 (505) T ss_pred CCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcc-cCCCCcccccccccCC------Cccceeeeec- Confidence 34799999998888866555444445556766543222 211 0000000000000000 0001111100 Q ss_pred CccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH-------------HHHHHHHH Q lcl|Aclame:pro 243 NGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV-------------AKVFVRNE 309 (340) Q Consensus 243 ~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~-------------~~~f~~~~ 309 (340) .+...+-+++.++..-...++.+.-+...++|+..-|++|..+|....+. .+..+. .+..++.. T Consensus 326 ~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~---~TAtei~s~~~~l~~t~~~~~~~~~~a 402 (505) T protein:vir:79 326 YGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGI---QTATEVVTNNSQTYQTRSSYITQVEKT 402 (505) T ss_pred cCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCcccc---chHHHHHHHHhHHHHHHHHHHHHHHHH Confidence 01112234566665667788899889999999999999999998754322 223332 12223445 Q ss_pred HHHHHHHHHHHHHhhC----------c-----c-ceeecccccCCCC Q lcl|Aclame:pro 310 LSPLQDRFREVNDWLG----------M-----E-VIRFKEYTLDNPE 340 (340) Q Consensus 310 l~P~~~~ie~ln~~l~----------~-----~-~~rf~~~~l~~~~ 340 (340) |..++..|.++-+.++ . + -+.|++.-+.+.+ T Consensus 403 l~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~ 449 (505) T protein:vir:79 403 IKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQE 449 (505) T ss_pred HHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHH Confidence 5555554443322111 0 1 1557666665555 No 200 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=44.45 E-value=0.81 Score=21.10 Aligned_cols=298 Identities=11% Similarity=0.008 Sum_probs=107.9 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) +.++++++.. ..+..++ ..+-|.. +.+ ...+-.+.-|+.+. +-....+.. T Consensus 74 ~~~~~~~~~~---~~~~~ki---~~n~~k~------Ivd----~~~~yl~g~p~~~~--------------~~d~~~~~~ 123 (512) T protein:vir:97 74 LVELTRRKEE---YMADNRV---AHDYASY------ISD----FINGYFLGNPIQCQ--------------DDDKDVLEA 123 (512) T ss_pred ccccCccccc---ccCccee---ecchHHH------HHH----HHhhhhcccCceec--------------cCChHHHHH Confidence 2211111000 0000000 0000000 000 00000011111110 000111111 Q ss_pred HHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---------eEEEEeC--C-- Q lcl|Aclame:pro 81 AST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---------VFWFVEN--F-- 146 (340) Q Consensus 81 ~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---------~~y~~~~--~-- 146 (340) +.. +.-| ........++.+.+.+|.+|..+.++..|++ .+..++|..+-+..+.. +||.... + T Consensus 124 l~~~~~~n--~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~-~i~~~~p~~~~~iyd~~~~~~~~~~vr~~~~~~~~~~~ 200 (512) T protein:vir:97 124 IEAFNDLN--DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVRYLRTKPIDKTD 200 (512) T ss_pred HHHHHhhc--CHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEeeeccccc Confidence 111 1111 1123456677889999999999999888864 56677776554332211 1222210 0 Q ss_pred -ce---EEEEccccEEEecCCC----------------C---------CCCcccccchhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 -TQ---PHEFAPDTVFHLLEPD----------------I---------NQEIYGLPEYLSALNSAWLNESATLFRRKYYQ 197 (340) Q Consensus 147 -~~---~~~~~~~dvih~r~~~----------------~---------~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~ 197 (340) +. ...+.++.|.+++.-+ + .+.-.|.|.+......++.-..+..-..+.+. T Consensus 201 ~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~d~~~S~~~~~~~ 280 (512) T protein:vir:97 201 EDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYDNAESDTANYMS 280 (512) T ss_pred cceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH Confidence 00 0122333333332100 0 01124777777766666655554444444455 Q ss_pred ccCCCceEEEeCCCCcCHHHHHHHHHHHHH-hcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 198 NGAHAGYIMYVTDPAQSATDVESLRDAMRN-SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMD 276 (340) Q Consensus 198 NG~~p~gil~~~~~~~~~e~~~~l~~~~~~-~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~ 276 (340) ..+.|-.++.-. ...+.+.....+....- ............... .+|.+++.+........+....+.-.+.|.. T Consensus 281 ~~~~~~lv~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~ 356 (512) T protein:vir:97 281 DLNDAMLLIKGN-LNLDPVEVRKQKEANVLFLEPTVYENRDTGIET---EGSVDGGYIYKQYDVQGTEAYKDRLNSDIHM 356 (512) T ss_pred HhcCceeeeecC-ccCCchhhhhhhhcccccccccchhhcccccCC---CCCcceEEEeecCCHHHHHHHHHHHHHHHHH Confidence 555666665421 12233333322221111 111111111111111 2233444444434455566777888899999 Q ss_pred HhcCCHHHcccccccccccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHhhCc-c--------ceeeccc Q lcl|Aclame:pro 277 AHRVPFQLMGGKPENIGSLGDVEKVAK-------------VFVRNELSPLQDRFREVNDWLGM-E--------VIRFKEY 334 (340) Q Consensus 277 ~f~VPp~~lG~~~~~~~~~~n~e~~~~-------------~f~~~~l~P~~~~ie~ln~~l~~-~--------~~rf~~~ 334 (340) .-++|..-.+...++ . +.+.... ..+...|.-.++.|.++-...+. + -+.|.+ T Consensus 357 ~s~~p~~~~~~~~gn-~---Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~- 431 (512) T protein:vir:97 357 FTNTPNMKDDNFSGT-Q---SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNR- 431 (512) T ss_pred HhCCcccCccccccc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCC- Confidence 999987544322111 1 1111111 11111222211112111111110 0 022321 Q ss_pred ccCCCC Q lcl|Aclame:pro 335 TLDNPE 340 (340) Q Consensus 335 ~l~~~~ 340 (340) .+...+ T Consensus 432 ~~p~~~ 437 (512) T protein:vir:97 432 NLPKSL 437 (512) T ss_pred CCCcCH Confidence 111111 No 201 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=42.70 E-value=0.87 Score=20.90 Aligned_cols=281 Identities=12% Similarity=0.084 Sum_probs=97.3 Q ss_pred CCCCCCCcccccccCCc----cceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAP----QKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVK 76 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k 76 (340) .-+...+ ......... ......+|..- +.+ .+.+++.. +| |..| ... T Consensus 54 ~G~~~~~-~~~~~~~~~~~~~~~~~v~n~~~~--ivd--~~a~~l~~--~g--f~~~--------------------d~~ 104 (501) T protein:vir:25 54 KGLRGRP-EVPEGASDEVKELAKLSVKNVLSL--VRD--SFAQNLSV--VG--YRNA--------------------LAK 104 (501) T ss_pred hcCCCch-hccccCChhhhhhHhhhhcChHHH--HHH--HHHhhhcc--cc--eecC--------------------Ccc Confidence 1111100 000000000 00000011100 000 00111100 00 1000 000 Q ss_pred hhh-HHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeec-ccC--c-------eEEEEeC Q lcl|Aclame:pro 77 RNV-LASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRG-VDD--S-------VFWFVEN 145 (340) Q Consensus 77 ~n~-~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~-~~~--~-------~~y~~~~ 145 (340) .+. +...+.-|.+ ......+..+.+.+|.||+.+.++..|.. +..++|..+... .+. + ++|.... T Consensus 105 ~~~~l~~i~~~N~~--d~~~~~~~~~a~i~G~ay~~v~~de~~~~--i~~~sp~~~~~iy~D~~~~~~~~~ai~~~~~~~ 180 (501) T protein:vir:25 105 ENDPAWEMWQRNRM--DARQAEVHRPALTYGASYVTVTPTDEGPV--FRTRSPRQILAVYADPSVDAWPQYALETWVAQK 180 (501) T ss_pred chHHHHHHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCCCCe--EEEeccccEEEEEecCCCCcceeEEEEEEeecc Confidence 000 0111122221 12345677888999999999999887743 445566544321 110 0 0111110 Q ss_pred C-c---eEEEEccc----------------------------------------------cEEEecCCCCCCCcccccch Q lcl|Aclame:pro 146 F-T---QPHEFAPD----------------------------------------------TVFHLLEPDINQEIYGLPEY 175 (340) Q Consensus 146 ~-~---~~~~~~~~----------------------------------------------dvih~r~~~~~~~~~G~sp~ 175 (340) . + ....+.+. .|+|+.+..-.++ .|.|.+ T Consensus 181 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~~~-~g~sdi 259 (501) T protein:vir:25 181 DAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGRDADD-MIVGEV 259 (501) T ss_pred ccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCccccCc-cccchh Confidence 0 0 00000000 2455543221122 477765 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeecc Q lcl|Aclame:pro 176 LSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLS 255 (340) Q Consensus 176 ~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~ 255 (340) +.....++....+..-......-.+.|--++ .+...++ .+. |+.. .+++++++ ++ +.++..+. T Consensus 260 e~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i--~G~~~~~--~~~----~~~~-----~~~i~~~~-~~---~~~~~q~~ 322 (501) T protein:vir:25 260 APLILLQQAINSVNFDRLIVSRFGANPQRVI--SGWTGSK--AEV----LKAS-----ALRVWTFE-DP---EVKAQAFP 322 (501) T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccHHHHH--hCCCCCc--cch----hhhc-----ccceeccC-CC---CceEEEec Confidence 5443333332222222222222223343222 2322222 111 2211 13444443 22 34444443 Q ss_pred chhhHHH-HHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHH-----HH---Hh--- Q lcl|Aclame:pro 256 EVATKDD-FFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-----VN---DW--- 323 (340) Q Consensus 256 ~~~~d~q-f~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie~-----ln---~~--- 323 (340) ..+.+ |++..+....+|++.=++|+..+|....+. ......+....|.-.+...+. |. +. T Consensus 323 --~~~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~N~------Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~ 394 (501) T protein:vir:25 323 --PASVEPYNLILEEMLQHVAMVAQISPAQVTGKMINV------SAEALAAAEANQQRKLAAKRESFGESWEQLLRLAAE 394 (501) T ss_pred --ccChHHHHHHHHHHHHHHHhhcCCChhhhccccCCh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23444 889999999999999999999988543221 111222222222221111111 11 11 Q ss_pred -hCcc----c----eeecccccCCCC Q lcl|Aclame:pro 324 -LGME----V----IRFKEYTLDNPE 340 (340) Q Consensus 324 -l~~~----~----~rf~~~~l~~~~ 340 (340) .+.. . +.|.+....+.- T Consensus 395 ~~~~~~~~~~~~i~v~w~~~~~~s~~ 420 (501) T protein:vir:25 395 MDDDPDTAADSGAEVLWRDTEARSFG 420 (501) T ss_pred HhCCCccccceeeeEEecCCCCCCHH Confidence 0110 0 122221111100 No 202 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=42.07 E-value=0.9 Score=20.83 Aligned_cols=287 Identities=12% Similarity=0.122 Sum_probs=100.3 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeee---------eecCchhh-------cccch-HHhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVEC---------ISNGKWYE-------PPVSF-SGLAKSL 63 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~---------~~~~~~~~-------~pv~~-~~l~~~~ 63 (340) || +..+++..+.- ....+||+ .+... ..+.... T Consensus 1 ~~------------------------------t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~i~~~~~~~~~~~~~~~ 50 (480) T protein:vir:78 1 MT------------------------------TYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLD 50 (480) T ss_pred CC------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccccchhhhhhh Confidence 11 11122111100 00001110 01110 0000000 Q ss_pred hcchhhhhhhhhhhhhH----------------H-HhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEec------CCcee Q lcl|Aclame:pro 64 RSAVHHSSPIYVKRNVL----------------A-STYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHS------VTGQL 120 (340) Q Consensus 64 r~~~~~~~~i~~k~n~~----------------~-~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~------~~G~~ 120 (340) ....++.-++...+..+ + ..+.-|. .......++.+.+.+|.||+.+.++ ..|.+ T Consensus 51 ~~~n~~~~ivd~~~~~l~~~g~~~~~d~~~~~~l~~i~~~N~--~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~ 128 (480) T protein:vir:78 51 VQPGWVATYLRTLSDRLDIEGFRISEDSEGLEELWNWWQAND--LDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP 128 (480) T ss_pred hhcchHHHHHHHHHhhhccCceecCCCchhHHHHHHHHHhcC--HHHHHHHHHHHHhhcCceEEEeecCccccCCCCCee Confidence 01112222222221111 0 0111111 1123345677889999999988763 34443 Q ss_pred EEEEEecCcceeecccCc---------eEEEEeCC-ce---EEEEccc-----------------------------cEE Q lcl|Aclame:pro 121 IKLLTSPAKYTRRGVDDS---------VFWFVENF-TQ---PHEFAPD-----------------------------TVF 158 (340) Q Consensus 121 ~~L~pl~~~~~~~~~~~~---------~~y~~~~~-~~---~~~~~~~-----------------------------dvi 158 (340) .+..++|..+.+..+.. ++|....+ +. ...+.++ .|+ T Consensus 129 -~i~~~~p~~~~~i~D~~~~~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv 207 (480) T protein:vir:78 129 -LIRVESPLYMYAELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVV 207 (480) T ss_pred -EEEEEcccceEEEEcCCCccceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceE Confidence 46666665544332211 01110100 00 0011111 356 Q ss_pred EecCCCCCCCcccccchhh----hHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccc Q lcl|Aclame:pro 159 HLLEPDINQEIYGLPEYLS----ALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNF 234 (340) Q Consensus 159 h~r~~~~~~~~~G~sp~~~----a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~ 234 (340) ||.+..-.++.+|.|.+.- +..++....+-..-...+| +.|--++ .+..+++...+.-...|+... T Consensus 208 ~f~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~---a~p~~~i--~G~~~~~~~~~~~~~~~~~~~----- 277 (480) T protein:vir:78 208 PLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQIL---GTPLRVI--SGVTTDELTNDGENTTLDIYY----- 277 (480) T ss_pred EeecccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhh---cchhhhh--hCCCccccccccccchhhhhh----- Confidence 6654332345677776542 2333332222222222333 3343333 333222221111111222211 Q ss_pred cccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 KNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQ 314 (340) Q Consensus 235 ~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~ 314 (340) +.++.+. + ++.++..+..... .-|++..+....+|+.+=++|++.+|....+.++ .+.. .+....|.=.+ T Consensus 278 ~~~~~~~-~---~~~~~~~~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~S---g~Al--~~~~~~l~~k~ 347 (480) T protein:vir:78 278 GRILTLA-S---EAAKISEFKAAEL-RNFAEEMEVFRKEAASITGLPPQYLSSSSENPAS---AEAI--IATDSRIVKMA 347 (480) T ss_pred hhhccCC-C---CCceEEecCccCH-HHHHHHHHHHHHHHhcccCCCHHHhccccCchhH---HHHH--HHHHHHHHHHH Confidence 2233332 2 2345655554322 2378888889999999999999999853322111 1111 11111111111 Q ss_pred HHHHH-----HH-------HhhCccc--------eeecccccCC-CC Q lcl|Aclame:pro 315 DRFRE-----VN-------DWLGMEV--------IRFKEYTLDN-PE 340 (340) Q Consensus 315 ~~ie~-----ln-------~~l~~~~--------~rf~~~~l~~-~~ 340 (340) .+.+. |. ..++.+. +.|.+-...+ .+ T Consensus 348 ~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~ 394 (480) T protein:vir:78 348 ERKGRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAA 394 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHH Confidence 11111 11 1112111 1121100000 00 No 203 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=41.22 E-value=0.94 Score=20.74 Aligned_cols=293 Identities=10% Similarity=0.055 Sum_probs=98.7 Q ss_pred CCCCCC---CcccccccCCccceEE-EECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MSKRKP---RKAVAMTASAPQKMEA-FTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVK 76 (340) Q Consensus 1 m~~~~~---~~~~~~~~~~~~~~~~-~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k 76 (340) --|.+. ......... ...+ .+|. ..+.+ .+.+|+. .+++... -... T Consensus 40 ~G~~~i~~~~~~~~~~~~---~~~~~~n~~--~~ivd--~~~~~l~----------------------~~g~~~~-~~~~ 89 (485) T protein:vir:10 40 EAERRPEAIGVTVPIQMQ---SLLAHVGYP--RLYVD--SIAERQA----------------------VEGFRFG-DADE 89 (485) T ss_pred hcCCcchhcCCCCChhhh---hhhhhcCcH--HHHHH--HHHhhhc----------------------ccceecC-CCch Confidence 001100 000000000 0000 0110 00000 0111111 0000000 0000 Q ss_pred hhhHH-HhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCce-------eEEEEEecCcceeecccCc---e--EEE- Q lcl|Aclame:pro 77 RNVLA-STYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQ-------LIKLLTSPAKYTRRGVDDS---V--FWF- 142 (340) Q Consensus 77 ~n~~~-~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~-------~~~L~pl~~~~~~~~~~~~---~--~y~- 142 (340) .+..+ ..+.-|. .......++.+.+.+|.||+.+.++..+. ...+.+++|..+....+.. . ++. T Consensus 90 ~~~~~~~i~~~N~--~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~~~~~ 167 (485) T protein:vir:10 90 ADEELWQWWQANN--LDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIGRVSKAIRV 167 (485) T ss_pred hHHHHHHHHHhcC--HhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcCCCCceeEEEEE Confidence 00000 1111121 12345677888999999999998875432 2346666665543322211 0 000 Q ss_pred -Ee-CCce---EEEEccc-------------------------cEEEecCCCCCCCcccccchh----hhHHHHHHHHHH Q lcl|Aclame:pro 143 -VE-NFTQ---PHEFAPD-------------------------TVFHLLEPDINQEIYGLPEYL----SALNSAWLNESA 188 (340) Q Consensus 143 -~~-~~~~---~~~~~~~-------------------------dvih~r~~~~~~~~~G~sp~~----~a~~~i~~~~aa 188 (340) .. .++. ...+.++ .|+|+.+..-..+.+|.|.+. .+..++....+- T Consensus 168 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~ 247 (485) T protein:vir:10 168 AYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARILML 247 (485) T ss_pred EEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHHHHH Confidence 00 0110 0011111 356665432234567888654 233333332222 Q ss_pred HHHHHHHHHccCCCceEEEeCCCCcCHHHHH--HHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHH Q lcl|Aclame:pro 189 TLFRRKYYQNGAHAGYIMYVTDPAQSATDVE--SLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNI 266 (340) Q Consensus 189 ~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~--~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~ 266 (340) ..-...||. .|--++ .+..+++...+ .-...|+.. .+.++.+ ++ .+.++..+...+- .-|++. T Consensus 248 ~~~~~~~~a---~p~~~i--~G~~~~~~~~~~~~~~~~~~~~-----~~~i~~~-~~---~d~k~~q~~~~~~-~~~~~~ 312 (485) T protein:vir:10 248 MQATAELMG---VPQRLI--FGIKPEEIGVDPETGQTLFDAY-----LARILAF-ED---AEGKIQQFSAAEL-ANFTNA 312 (485) T ss_pred HHHHHHhhc---chHHHH--hcCCcccccccccccchhhhhc-----ccceecc-CC---CCceEEeecccch-HHHHHH Confidence 222223333 333333 22111111110 001112211 1233433 22 2345555443221 237787 Q ss_pred HHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHH----------HHHHHHHHHHHHHHHHHHhhCc--c----cee Q lcl|Aclame:pro 267 KKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKV----------FVRNELSPLQDRFREVNDWLGM--E----VIR 330 (340) Q Consensus 267 ~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~----------f~~~~l~P~~~~ie~ln~~l~~--~----~~r 330 (340) .+....+|+.+=++|++.+|....+.++...+...... .+...|..+++.+..+...... + -+. T Consensus 313 l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~ 392 (485) T protein:vir:10 313 LDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNSIFGGAWEEAMRLAYRMMKGGDVPPDMLRMETV 392 (485) T ss_pred HHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccceeeeEE Confidence 78888889999999999987543221111111111111 1111222222211111110000 0 022 Q ss_pred ecccccCCCC Q lcl|Aclame:pro 331 FKEYTLDNPE 340 (340) Q Consensus 331 f~~~~l~~~~ 340 (340) |.+-...+.- T Consensus 393 w~~~~~~~~~ 402 (485) T protein:vir:10 393 WRDPSTPTYA 402 (485) T ss_pred ecCCCCCCHH Confidence 3211100000 No 204 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=37.02 E-value=1.1 Score=20.27 Aligned_cols=277 Identities=10% Similarity=0.017 Sum_probs=97.5 Q ss_pred CCCCCCCcccccccCC-------ccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASA-------PQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPI 73 (340) Q Consensus 1 m~~~~~~~~~~~~~~~-------~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i 73 (340) +.++++....+...-. ......|.||+|..+.. - T Consensus 49 ~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~---------------------------------------~ 89 (499) T protein:vir:10 49 EKHEFDNATVEAANVMVNHAKYITDMNVGFMTGNPVKYVA---------------------------------------E 89 (499) T ss_pred hcCCcCcCCCCcceeecchHHHHHHHHhhhhcccCceeec---------------------------------------C Confidence 3322211110000000 00001123333321100 0 Q ss_pred hhhhhhHHH-hhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCcee----------------EEEEEecCcceeeccc Q lcl|Aclame:pro 74 YVKRNVLAS-TYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQL----------------IKLLTSPAKYTRRGVD 136 (340) Q Consensus 74 ~~k~n~~~~-~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~----------------~~L~pl~~~~~~~~~~ 136 (340) ..+....+. .+..| ........++.+.+.+|.+|..+..+..|.+ ..+..++|..+-+..+ T Consensus 90 ~~~~~~~l~~~~~~n--~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~v~~ 167 (499) T protein:vir:10 90 KGKNIDDILEVFNQI--DIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATVVVCD 167 (499) T ss_pred ChhHHHHHHHHHhhc--CHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEcccceEEEec Confidence 000011111 11111 1123456677889999999999988877743 2345555543322211 Q ss_pred C--c-------eEEEEeC--Cce-E---EEEccccEEEecCCC----------------C---------CCCcccccchh Q lcl|Aclame:pro 137 D--S-------VFWFVEN--FTQ-P---HEFAPDTVFHLLEPD----------------I---------NQEIYGLPEYL 176 (340) Q Consensus 137 ~--~-------~~y~~~~--~~~-~---~~~~~~dvih~r~~~----------------~---------~~~~~G~sp~~ 176 (340) . . ++|.... ++. . ..+.++.|.++.... + .+...|.|.+. T Consensus 168 d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~d~e 247 (499) T protein:vir:10 168 DTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFGAVPIIEFRNNEERQGDFE 247 (499) T ss_pred CCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCCccceEEecCCCCCCCchH Confidence 1 0 1122111 111 0 112233333321000 0 01124666666 Q ss_pred hhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccc Q lcl|Aclame:pro 177 SALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSE 256 (340) Q Consensus 177 ~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~ 256 (340) .....+..-..+..-..+.++..+.|-.++ ++..++++. +... .+ +.+.+..+.. .++.+++.+.- T Consensus 248 ~v~~liD~~~~~~S~~~~~~~~~~~~~lv~--~G~~~~~~~-~~~~-~~-------~~~~~~~~~~---~~~~d~~~l~~ 313 (499) T protein:vir:10 248 QLISLIDAYNLLQTDRISDKEAFVDALLVT--FGFGLGDDK-DDIQ-RL-------KRGAIEAPPR---EEGADIEWLTK 313 (499) T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCceeee--ecCcccccc-chhh-hh-------hhcceeccCC---CCCCcceEEec Confidence 655555544444333444445555565555 443333221 1111 01 1112222211 12223333433 Q ss_pred hhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH-------------HHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 257 VATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA-------------KVFVRNELSPLQDRFREVNDW 323 (340) Q Consensus 257 ~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~-------------~~f~~~~l~P~~~~ie~ln~~ 323 (340) ......+.+..+.-.+.|...-++|..--+-. +++-| ..... +..+...+.-+++.+. +. T Consensus 314 ~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~---~gn~S-g~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~---~~ 386 (499) T protein:vir:10 314 SFDETQVNLLSQSIENDIHKISYVPNMNDEKF---MGNVS-GEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQ---TI 386 (499) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCcccCCchhh---cccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH Confidence 33445566666777788888888874221110 01111 11111 1112222222222222 22 Q ss_pred hCccc---------eeecccccCCCC Q lcl|Aclame:pro 324 LGMEV---------IRFKEYTLDNPE 340 (340) Q Consensus 324 l~~~~---------~rf~~~~l~~~~ 340 (340) ++..- +.|.+ .+...+ T Consensus 387 ~~~~~~~~d~~~i~i~f~~-~~p~n~ 411 (499) T protein:vir:10 387 VNIKGANDDASGCKISLVA-NIPSNL 411 (499) T ss_pred HhccCCccccccceEEeCC-CCCCCH Confidence 22111 22221 111111 No 205 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=36.53 E-value=1.2 Score=20.21 Aligned_cols=319 Identities=12% Similarity=0.069 Sum_probs=128.4 Q ss_pred CC-------------------CCCCCcccccccCCccce----EEEECCCceeecCcchhhheeeeeecCchhhcccchH Q lcl|Aclame:pro 1 MS-------------------KRKPRKAVAMTASAPQKM----EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFS 57 (340) Q Consensus 1 m~-------------------~~~~~~~~~~~~~~~~~~----~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 57 (340) |+ .+-..++.+...-++.-+ .++..+.- +-.|+.... -+ -+-. T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~--------~~~~~~~~~---~~---~~~~ 68 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAV--------MQQFFGIDN---NI---SGTK 68 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccce--------eeeeecccc---cc---chHH Confidence 11 111111111111111000 00111100 001110000 00 0111 Q ss_pred Hhhhhhhcchhh---hhhhhhhhhhHHH-----------------------------hhhccCCCcHHHHHHHHHHHHHh Q lcl|Aclame:pro 58 GLAKSLRSAVHH---SSPIYVKRNVLAS-----------------------------TYIPHPLLSRQDFSRFALDYLVF 105 (340) Q Consensus 58 ~l~~~~r~~~~~---~~~i~~k~n~~~~-----------------------------~~~pnp~~~~~~~~~~~~~~ll~ 105 (340) .|.+..|.-+.| .+++..-.|.... ...-|-+.+..--..++..|.+. T Consensus 69 eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVD 148 (516) T protein:vir:10 69 DLINTYRQLINNPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVD 148 (516) T ss_pred HHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhc Confidence 222222221111 1122111111110 00111111111122345677899 Q ss_pred CCeeEEEEec-CCceeEEEEEecCcceeecccC---c-----------eEEEEeCC-------------ceEEEEccccE Q lcl|Aclame:pro 106 GNAFLEQRHS-VTGQLIKLLTSPAKYTRRGVDD---S-----------VFWFVENF-------------TQPHEFAPDTV 157 (340) Q Consensus 106 Gnay~~i~r~-~~G~~~~L~pl~~~~~~~~~~~---~-----------~~y~~~~~-------------~~~~~~~~~dv 157 (340) |..|..++-+ ....+.+|..|+|.+++..+.. + .||.+..+ +..+.++.+-| T Consensus 149 gRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI 228 (516) T protein:vir:10 149 SRIFFHKIMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAV 228 (516) T ss_pred ceEEEEEEecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhhe Confidence 9999986554 3556999999999877644321 1 23333211 13445555555 Q ss_pred EEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC-HHHHHHHHHHHHHhc----- Q lcl|Aclame:pro 158 FHLL--EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS-ATDVESLRDAMRNSK----- 229 (340) Q Consensus 158 ih~r--~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~-~e~~~~l~~~~~~~~----- 229 (340) .|.. ..+.+.+.+ +|-+..|...+..-.-.++..-=|=-.-|.=.-|+++.=+.+. ..+.+=+++-+..++ T Consensus 229 ~y~hSGL~d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvY 307 (516) T protein:vir:10 229 VYASSGLMDCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVY 307 (516) T ss_pred eeecccceeCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEE Confidence 5444 344444544 7777777776665555555444433344555556665433443 333333444443322 Q ss_pred ----Cc-ccccc-ccccc-------CCccccccceeec--cchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccc Q lcl|Aclame:pro 230 ----GL-GNFKN-LFFYS-------PNGKPDGIKIVPL--SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGS 294 (340) Q Consensus 230 ----g~-~n~~~-~~vl~-------~~~~~~g~~~~pl--~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~ 294 (340) |. .|.++ +-+++ .||+ |.+++.| +.+.-+++=++ +-...+-++.+||.+.++-..+.+.+ T Consensus 308 Da~TGev~ddrk~msMlEDyWLpRReGgr--gTEItTLpGgqnlgem~DV~---YF~kkLy~aLnVP~sRl~~e~~~~~~ 382 (516) T protein:vir:10 308 DSNTGTVKNQKRNLSMTEDYWLMRRDGKS--VTEVSSLPGAQTMGDMDDVR---WFNKKLYEALRIPLSRIPRDDGGMVI 382 (516) T ss_pred eCCCCeeccchhhhhhHhhhcccccCCCC--ccceeeccccCCcChHHHHH---HHHHHHHHHhCCCcccccCCCCceee Confidence 21 22222 22222 1333 4444443 33333433333 34577889999999998643322221 Q ss_pred cccHHHHHH---HHHHHHHHHHHHHHHHHHH-hhC-----ccceeec---------ccccCCCC Q lcl|Aclame:pro 295 LGDVEKVAK---VFVRNELSPLQDRFREVND-WLG-----MEVIRFK---------EYTLDNPE 340 (340) Q Consensus 295 ~~n~e~~~~---~f~~~~l~P~~~~ie~ln~-~l~-----~~~~rf~---------~~~l~~~~ 340 (340) ++...+..+ .|. .-|.-+..++.++.. .|- -.++.=+ .|++...- T Consensus 383 ~Gr~~EItRDEiKF~-KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn 445 (516) T protein:vir:10 383 GGQDTAITRDELDFR-KFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDS 445 (516) T ss_pred ccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecc Confidence 233333333 344 346667777766332 221 1111111 12222211 No 206 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=36.53 E-value=1.2 Score=20.21 Aligned_cols=319 Identities=12% Similarity=0.069 Sum_probs=128.4 Q ss_pred CC-------------------CCCCCcccccccCCccce----EEEECCCceeecCcchhhheeeeeecCchhhcccchH Q lcl|Aclame:pro 1 MS-------------------KRKPRKAVAMTASAPQKM----EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFS 57 (340) Q Consensus 1 m~-------------------~~~~~~~~~~~~~~~~~~----~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~ 57 (340) |+ .+-..++.+...-++.-+ .++..+.- +-.|+.... -+ -+-. T Consensus 3 ~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~--------~~~~~~~~~---~~---~~~~ 68 (516) T protein:vir:10 3 FLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAV--------MQQFFGIDN---NI---SGTK 68 (516) T ss_pred chHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccce--------eeeeecccc---cc---chHH Confidence 11 111111111111111000 00111100 001110000 00 0111 Q ss_pred Hhhhhhhcchhh---hhhhhhhhhhHHH-----------------------------hhhccCCCcHHHHHHHHHHHHHh Q lcl|Aclame:pro 58 GLAKSLRSAVHH---SSPIYVKRNVLAS-----------------------------TYIPHPLLSRQDFSRFALDYLVF 105 (340) Q Consensus 58 ~l~~~~r~~~~~---~~~i~~k~n~~~~-----------------------------~~~pnp~~~~~~~~~~~~~~ll~ 105 (340) .|.+..|.-+.| .+++..-.|.... ...-|-+.+..--..++..|.+. T Consensus 69 eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~ll~F~~~~~~~fR~WYVD 148 (516) T protein:vir:10 69 DLINTYRQLINNPEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCRLLDASRKLDTLFRRWYVD 148 (516) T ss_pred HHHHHHHHHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHHHhccchhhhHHHhhhhhc Confidence 222222221111 1122111111110 00111111111122345677899 Q ss_pred CCeeEEEEec-CCceeEEEEEecCcceeecccC---c-----------eEEEEeCC-------------ceEEEEccccE Q lcl|Aclame:pro 106 GNAFLEQRHS-VTGQLIKLLTSPAKYTRRGVDD---S-----------VFWFVENF-------------TQPHEFAPDTV 157 (340) Q Consensus 106 Gnay~~i~r~-~~G~~~~L~pl~~~~~~~~~~~---~-----------~~y~~~~~-------------~~~~~~~~~dv 157 (340) |..|..++-+ ....+.+|..|+|.+++..+.. + .||.+..+ +..+.++.+-| T Consensus 149 gRi~fhKiid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI 228 (516) T protein:vir:10 149 SRIFFHKIMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAV 228 (516) T ss_pred ceEEEEEEecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhhe Confidence 9999986554 3556999999999877644321 1 23333211 13445555555 Q ss_pred EEec--CCCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC-HHHHHHHHHHHHHhc----- Q lcl|Aclame:pro 158 FHLL--EPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS-ATDVESLRDAMRNSK----- 229 (340) Q Consensus 158 ih~r--~~~~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~-~e~~~~l~~~~~~~~----- 229 (340) .|.. ..+.+.+.+ +|-+..|...+..-.-.++..-=|=-.-|.=.-|+++.=+.+. ..+.+=+++-+..++ T Consensus 229 ~y~hSGL~d~~~~~i-~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvY 307 (516) T protein:vir:10 229 VYASSGLMDCSDRGI-IGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVY 307 (516) T ss_pred eeecccceeCCCCce-eeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEE Confidence 5444 344444544 7777777776665555555444433344555556665433443 333333444443322 Q ss_pred ----Cc-ccccc-ccccc-------CCccccccceeec--cchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccc Q lcl|Aclame:pro 230 ----GL-GNFKN-LFFYS-------PNGKPDGIKIVPL--SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGS 294 (340) Q Consensus 230 ----g~-~n~~~-~~vl~-------~~~~~~g~~~~pl--~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~ 294 (340) |. .|.++ +-+++ .||+ |.+++.| +.+.-+++=++ +-...+-++.+||.+.++-..+.+.+ T Consensus 308 Da~TGev~ddrk~msMlEDyWLpRReGgr--gTEItTLpGgqnlgem~DV~---YF~kkLy~aLnVP~sRl~~e~~~~~~ 382 (516) T protein:vir:10 308 DSNTGTVKNQKRNLSMTEDYWLMRRDGKS--VTEVSSLPGAQTMGDMDDVR---WFNKKLYEALRIPLSRIPRDDGGMVI 382 (516) T ss_pred eCCCCeeccchhhhhhHhhhcccccCCCC--ccceeeccccCCcChHHHHH---HHHHHHHHHhCCCcccccCCCCceee Confidence 21 22222 22222 1333 4444443 33333433333 34577889999999998643322221 Q ss_pred cccHHHHHH---HHHHHHHHHHHHHHHHHHH-hhC-----ccceeec---------ccccCCCC Q lcl|Aclame:pro 295 LGDVEKVAK---VFVRNELSPLQDRFREVND-WLG-----MEVIRFK---------EYTLDNPE 340 (340) Q Consensus 295 ~~n~e~~~~---~f~~~~l~P~~~~ie~ln~-~l~-----~~~~rf~---------~~~l~~~~ 340 (340) ++...+..+ .|. .-|.-+..++.++.. .|- -.++.=+ .|++...- T Consensus 383 ~Gr~~EItRDEiKF~-KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn 445 (516) T protein:vir:10 383 GGQDTAITRDELDFR-KFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDS 445 (516) T ss_pred ccccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecc Confidence 233333333 344 346667777766332 221 1111111 12222211 No 207 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=36.47 E-value=1.2 Score=20.21 Aligned_cols=290 Identities=11% Similarity=0.102 Sum_probs=99.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheee--------------eeecCc--hhhcccch-HHhhhhh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVE--------------CISNGK--WYEPPVSF-SGLAKSL 63 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~--------------~~~~~~--~~~~pv~~-~~l~~~~ 63 (340) || +..+++.++. -+..|. .-..+... ..+.... T Consensus 1 ~~------------------------------t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~~~~~~~~~~~~~~~ 50 (480) T protein:vir:78 1 MT------------------------------TYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLKTIGIGAPPELAYLD 50 (480) T ss_pred CC------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccchhHhhhh Confidence 11 1112111110 000110 00001110 0000100 Q ss_pred hcchhhhhhhhhhhhhH----------------H-HhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEec------CCcee Q lcl|Aclame:pro 64 RSAVHHSSPIYVKRNVL----------------A-STYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHS------VTGQL 120 (340) Q Consensus 64 r~~~~~~~~i~~k~n~~----------------~-~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~------~~G~~ 120 (340) -...++.-++......+ + ..+.-|. .......++.+.+.+|.||+.+.++ ..|.+ T Consensus 51 ~~~n~~~~ivd~~~~~l~~~g~~~~~d~~~~~~l~~i~~~N~--~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~ 128 (480) T protein:vir:78 51 VQPGWVATYLRTLSDRLDIEGFRISEDSEGLEELWNWWQAND--LDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIP 128 (480) T ss_pred hhcchHHHHHHHHHhhhccCceecCCCchhHHHHHHHHHhcC--HHHHHHHHHHHHhhcCceEEEEecCccccCCCCCee Confidence 01112222222221111 1 0111111 1123445677889999999998763 34443 Q ss_pred EEEEEecCcceeecccCc---------eEEEEeC-C-----------ceEEEE---------------------ccccEE Q lcl|Aclame:pro 121 IKLLTSPAKYTRRGVDDS---------VFWFVEN-F-----------TQPHEF---------------------APDTVF 158 (340) Q Consensus 121 ~~L~pl~~~~~~~~~~~~---------~~y~~~~-~-----------~~~~~~---------------------~~~dvi 158 (340) .+..++|..+.+..+.. .+|.-.. . +..+.+ ..=.|+ T Consensus 129 -~i~~~~p~~~~~~~D~~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv 207 (480) T protein:vir:78 129 -LIRVESPLYMYAELDPRNTRRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVV 207 (480) T ss_pred -EEEEEcccceEEEEcCCCccceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceE Confidence 35566665543322210 0110000 0 011111 111356 Q ss_pred EecCCCCCCCcccccchhh-hHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 159 HLLEPDINQEIYGLPEYLS-ALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNL 237 (340) Q Consensus 159 h~r~~~~~~~~~G~sp~~~-a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~ 237 (340) ||.+..-.++.+|.|.+.- ....++....+..-......-.+.|--+| .+..+++...+.-...|+... +.+ T Consensus 208 ~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i--~G~~~~~~~~~~~~~~~~~~~-----~~~ 280 (480) T protein:vir:78 208 PLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVI--SGVTTDELTNDGENTTLDIYY-----GRI 280 (480) T ss_pred EeecccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhh--hcCCccccccccccchhhhhh-----hhh Confidence 6653322345678876542 22222221111111111222223343333 332222221111111222211 122 Q ss_pred ccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR- 316 (340) Q Consensus 238 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~- 316 (340) +.+ ++ ...++..+..... ..|++..+....+|+..=++|+..+|....+.++ .+... +....|.=.+.. T Consensus 281 ~~~-~~---~~~~~~~~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~S---g~Alk--~~~~~l~~ka~~~ 350 (480) T protein:vir:78 281 LTL-AS---EAAKISEFKAAEL-RNFAEEMEVFRKEAASITGLPPQYLSSSSENPAS---AEAII--ATDSRIVKMAERK 350 (480) T ss_pred ccC-CC---CCceEEecCccCH-HHHHHHHHHHHHHHhcccCCChHHhccccCcchH---HHHHH--HHHHHHHHHHHHH Confidence 222 22 2345655553321 2277777788888999999999999864322111 12211 111111111111 Q ss_pred -------HHHH----HHhhCccc--------eeecccccCCC-C Q lcl|Aclame:pro 317 -------FREV----NDWLGMEV--------IRFKEYTLDNP-E 340 (340) Q Consensus 317 -------ie~l----n~~l~~~~--------~rf~~~~l~~~-~ 340 (340) |.++ -..+|.+. +.|.+-...+. + T Consensus 351 ~~~f~~~l~~~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~ 394 (480) T protein:vir:78 351 GRIFGGAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAA 394 (480) T ss_pred HHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHH Confidence 1111 11122211 12321111111 1 No 208 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=36.06 E-value=1.2 Score=20.16 Aligned_cols=286 Identities=11% Similarity=0.079 Sum_probs=118.1 Q ss_pred CCCCCCC--------------cccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSKRKPR--------------KAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~~~~~--------------~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) +-+.... .+..-++.-......+.|++|..+.-. T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~v~-------------------------------- 97 (522) T protein:vir:47 50 QSKWDDVQYKNTDGDIKSRPMNHLPIARTASKKIASLVYNEQATITTK-------------------------------- 97 (522) T ss_pred cCCcccccccccCcchhcccceecchHHHHHHHHhhhhcCCcceeecC-------------------------------- Confidence 1111100 000000000011112233333221100 Q ss_pred hhhhhhhhhhhhhHHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceee------------ Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRR------------ 133 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~------------ 133 (340) ....+..+.. +..| -....+...+...+..|.+++.+..+. |+ +.+..+++...-+ T Consensus 98 -------d~~~~~~l~~~l~~n--~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~i~~v~ad~~~P~~~~~~~~~e~a 166 (522) T protein:vir:47 98 -------NEILQKFLDDMLTND--RFNKNFERYLESCLALGGLAMRPYIDG-DK-VRVAFIQAPVFFPLESNTQDVSSAA 166 (522) T ss_pred -------ChHHHHHHHHHHhhc--chHHHHHHHHHHhhccCCEEEEEEEcC-Cc-eEEEEEcCCceEEEEEcCCceEEEE Confidence 0011111110 0011 112335566666677777776665553 22 2222232221111 Q ss_pred --------cccCceEEE-------------------------Ee-----CC-----ceEEEEc--------ccc------ Q lcl|Aclame:pro 134 --------GVDDSVFWF-------------------------VE-----NF-----TQPHEFA--------PDT------ 156 (340) Q Consensus 134 --------~~~~~~~y~-------------------------~~-----~~-----~~~~~~~--------~~d------ 156 (340) ......||. +. .. |.++.+. +.+ T Consensus 167 ~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~~~ 246 (522) T protein:vir:47 167 ILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDKYKNLEPVTVFENL 246 (522) T ss_pred EEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccccccccccCCCCceEeCCC Confidence 011111221 10 00 1111000 001 Q ss_pred ----EEEecCCCCC----CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceE----EEeCCCCcCHHHHHHHHHH Q lcl|Aclame:pro 157 ----VFHLLEPDIN----QEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYI----MYVTDPAQSATDVESLRDA 224 (340) Q Consensus 157 ----vih~r~~~~~----~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gi----l~~~~~~~~~e~~~~l~~~ 224 (340) ..||+.+-++ +..+|+|.+..+...+......-.-...-|+-|-+.-.| +...+...+.+. ..... T Consensus 247 ~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~--~~~~~ 324 (522) T protein:vir:47 247 SRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQRQYQRPDGTI--DFRPR 324 (522) T ss_pred CcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCCCCCccc--ccccc Confidence 2356544332 245799999988888866555444445556666543221 221111000000 00000 Q ss_pred HHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH--- Q lcl|Aclame:pro 225 MRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV--- 301 (340) Q Consensus 225 ~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~--- 301 (340) +. -..+++.-.+....++-+++.++..-.+.++.+.-+.....|+...|++|..+|....+ -.++.+. T Consensus 325 fd------~~~~~f~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~---~kTAtEi~s~ 395 (522) T protein:vir:47 325 FD------VEQNVYMQIGGSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQG---MKTATEIVSE 395 (522) T ss_pred cC------cccceEeecCCCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccc---cccHHHHHHH Confidence 00 00111111111112222355566556788999999999999999999999999875432 2334444 Q ss_pred ----------HHHHHHHHHHHHHHHHHHHHHh---hC----cc---ceeecccccCCCC Q lcl|Aclame:pro 302 ----------AKVFVRNELSPLQDRFREVNDW---LG----ME---VIRFKEYTLDNPE 340 (340) Q Consensus 302 ----------~~~f~~~~l~P~~~~ie~ln~~---l~----~~---~~rf~~~~l~~~~ 340 (340) .+..++.+|.-++..|.++-.. ++ .. .+.|++..+.+.+ T Consensus 396 ~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~ 454 (522) T protein:vir:47 396 NSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRH 454 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHH Confidence 3445555565655555543221 11 11 1568877777766 No 209 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=32.03 E-value=1.5 Score=19.69 Aligned_cols=313 Identities=10% Similarity=0.040 Sum_probs=123.3 Q ss_pred CCCCCCC-------------ccccccc---CCccceEEEECCCceeecCcchhhhee--eeeecCchhhcccchHHhhhh Q lcl|Aclame:pro 1 MSKRKPR-------------KAVAMTA---SAPQKMEAFTFGEPVPVLDKRDILDYV--ECISNGKWYEPPVSFSGLAKS 62 (340) Q Consensus 1 m~~~~~~-------------~~~~~~~---~~~~~~~~~~f~~p~~~~~~~~~~~~~--~~~~~~~~~~~pv~~~~l~~~ 62 (340) |+.+|.. |..-... .....-..| ++.....-..+...+ ..+-.+.|+..-++-..+..+ T Consensus 19 l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~~~~~---dst~~~a~~~Las~l~~~ltP~~~WFrl~~~d~~~~~~ 95 (522) T protein:vir:94 19 LKNGRQPYETRAQNCAAVTIPSLFPKESDNSSTEYTTPW---QAVGARCLNNLAAKLMLALFPQSPWMRLTVSEYEAKTL 95 (522) T ss_pred HHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccccc---cccHHHHHHHHHHHHHhhcCCCCcccccccchhhhhcc Confidence 1111100 0000000 000000000 111110000111111 111233454432221111100 Q ss_pred h---hcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeE--EEEEecCcceeecccC Q lcl|Aclame:pro 63 L---RSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLI--KLLTSPAKYTRRGVDD 137 (340) Q Consensus 63 ~---r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~--~L~pl~~~~~~~~~~~ 137 (340) . ...+....-+ .+....+..... ....+..+-....++.++|||.+++..+..|.+. ..+|+..-++.....+ T Consensus 96 ~~~~~~~~~v~~~L-~~ve~~~~~~~~-~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~~pl~~y~v~~d~~G 173 (522) T protein:vir:94 96 SQDSEAAARVDEGL-AMVERVLMAYME-TNSFRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRMYRLVSYVVQRDAFG 173 (522) T ss_pred CcccchhHHHHHHH-HHHHHHHHHHHH-hcCcHHHHHHHHHHHHhhCcEeEeeeccCCCceeeEEEEEcceEEEeeCCCc Confidence 0 0000000001 111111111111 1113344556678889999999998887766654 4556643232221111 Q ss_pred ce----------------------------------EEEE---eCC---------ceEEE-------EccccEEEecCCC Q lcl|Aclame:pro 138 SV----------------------------------FWFV---ENF---------TQPHE-------FAPDTVFHLLEPD 164 (340) Q Consensus 138 ~~----------------------------------~y~~---~~~---------~~~~~-------~~~~dvih~r~~~ 164 (340) .. +|.. +.+ +..+. |..-..+.+|-.- T Consensus 174 ~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~ 253 (522) T protein:vir:94 174 NILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSYPLTACPYIPVRMVR 253 (522) T ss_pred CeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCCccccCCceeeeeee Confidence 10 0000 000 00000 0001123333222 Q ss_pred CCCCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCc Q lcl|Aclame:pro 165 INQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNG 244 (340) Q Consensus 165 ~~~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~ 244 (340) ..++.||.||..-+...+...+...+-....-.-...|..++. +++....... ..|+.+ .++ + | T Consensus 254 ~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~-~~g~~~~~~~---------~~~~~g---~~v--~-g 317 (522) T protein:vir:94 254 LDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVN-PNGITQPRRL---------NKAATG---EFV--A-G 317 (522) T ss_pred cCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeec-ccccccchhe---------eccCCc---eee--c-C Confidence 3456899999999999888888888888888888888887663 4444443322 111111 122 1 2 Q ss_pred cccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHH--HHHHHHHHHHHHHHHH-HH Q lcl|Aclame:pro 245 KPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK--VFVRNELSPLQDRFRE-VN 321 (340) Q Consensus 245 ~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~--~f~~~~l~P~~~~ie~-ln 321 (340) ..+.++..|+...+.=.--.+.-+..+..|-++|-+. .++..+.. .-++++... .=....|.|...++.+ +- T Consensus 318 ~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~--~~~~~~~~---r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l 392 (522) T protein:vir:94 318 RVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAFLLN--SAVQRNAE---RVTAEEIRYVAGELEATLGGVYSVQSQELQ 392 (522) T ss_pred CcccceeeecccccchhHHHHHHHHHHHHHHHHHhhh--hhccCCCc---cccHHHHHHHHHHHHHHHhHHHHHHHHHHH Confidence 2345666665543322222444455667788888654 23222221 123344322 2334667777777653 21 Q ss_pred -----HhhCccceeeccc-----ccCCCC Q lcl|Aclame:pro 322 -----DWLGMEVIRFKEY-----TLDNPE 340 (340) Q Consensus 322 -----~~l~~~~~rf~~~-----~l~~~~ 340 (340) +.++ -..|.... ++-+++ T Consensus 393 ~Pli~r~~~-il~r~g~lP~~p~~~v~v~ 420 (522) T protein:vir:94 393 LPIVRVLMN-QLQSAGMIPDLPKEAVEPT 420 (522) T ss_pred HHHHHHHHH-HHHhcCCCCCCCcccEEee Confidence 1111 11111111 111112 No 210 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=31.82 E-value=1.5 Score=19.67 Aligned_cols=279 Identities=11% Similarity=0.038 Sum_probs=96.0 Q ss_pred CCCC------CCCcccccc-cCCcc-------------ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhh Q lcl|Aclame:pro 1 MSKR------KPRKAVAMT-ASAPQ-------------KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLA 60 (340) Q Consensus 1 m~~~------~~~~~~~~~-~~~~~-------------~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~ 60 (340) .-|. .+....... ...+- ..-.|-||.|.. ... T Consensus 28 ~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~-------------------------~~~-- 80 (451) T protein:vir:10 28 YNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVL-------------------------FDI-- 80 (451) T ss_pred cccCccccccccccccccccccccccccccchHHHHHHhhhhheecccce-------------------------eec-- Confidence 1111 000000000 00000 000122222211 100 Q ss_pred hhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCc-------eeEEEEEecCcceee Q lcl|Aclame:pro 61 KSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTG-------QLIKLLTSPAKYTRR 133 (340) Q Consensus 61 ~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G-------~~~~L~pl~~~~~~~ 133 (340) . -..........+..|. .......++.+.+.+|.||..+.++... ..+.+..++|..+-+ T Consensus 81 ---~--------~~~~~~~~~~~~~~n~--~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~ 147 (451) T protein:vir:10 81 ---D--------NNKELNEKVTDVLGNE--FTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIP 147 (451) T ss_pred ---C--------CcHHHHHHHHHHhccC--HHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEE Confidence 0 0000111122222221 1233456778889999999998887531 133455566655433 Q ss_pred cccC----c-----eEEEEeCC--c----e----EEEEccccEEEecCCCC------------------------CCCcc Q lcl|Aclame:pro 134 GVDD----S-----VFWFVENF--T----Q----PHEFAPDTVFHLLEPDI------------------------NQEIY 170 (340) Q Consensus 134 ~~~~----~-----~~y~~~~~--~----~----~~~~~~~dvih~r~~~~------------------------~~~~~ 170 (340) ..+. . ++|....+ + + ...+.++.+.+++..+. .+.-. T Consensus 148 vydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~ 227 (451) T protein:vir:10 148 IYRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIK 227 (451) T ss_pred EEcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCC Confidence 2111 1 12221111 0 0 01122223333221000 01123 Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCc--cccc Q lcl|Aclame:pro 171 GLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNG--KPDG 248 (340) Q Consensus 171 G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~--~~~g 248 (340) |.|.+......+..-..+..-..+.++--+.|-.++.--++..+++....++ . .+++.+.+.+ ...+ T Consensus 228 ~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~----~-------~~~i~~~~~~~~~~~~ 296 (451) T protein:vir:10 228 KQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTSEFLKELK----R-------YKTIKTETDSEGDSGG 296 (451) T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhhHHHHh----h-------CCeEEecCcCCccCCc Confidence 5666655444444433333323333333344444443111112223222221 1 1122222211 1223 Q ss_pred cceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHH--------H- Q lcl|Aclame:pro 249 IKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFR--------E- 319 (340) Q Consensus 249 ~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~ie--------~- 319 (340) ++|.. -......+.+..+.-.++|...-++|.. . .. +++|.......|.-..+.=.+...+ + T Consensus 297 ~~~l~--~~~~~~~~~~~~~~l~~~I~~~s~~p~~--~--~~---~~gn~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~ 367 (451) T protein:vir:10 297 LKTMQ--IEIPTEARKIILEILKKQIYESGQGLQQ--D--TE---NFGNASGVALKFFYRKLELKSGLLETEFRTSFDKL 367 (451) T ss_pred ceEEe--ecCCHHHHHHHHHHHHHHHHHHhCcccc--c--cc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 44432 2234455667778888999999999852 1 11 1233323222222222211111111 1 Q ss_pred ---HHHhhCcc-----ceeecccccCCCC Q lcl|Aclame:pro 320 ---VNDWLGME-----VIRFKEYTLDNPE 340 (340) Q Consensus 320 ---ln~~l~~~-----~~rf~~~~l~~~~ 340 (340) +...++.. -+.|.+.. ...+ T Consensus 368 ~~li~~~~~~~d~~~i~i~f~~~~-p~n~ 395 (451) T protein:vir:10 368 IKAILYFLGVTDYKKIQQTYTRNM-MSND 395 (451) T ss_pred HHHHHHHhCCCCccceeEEecCCC-CCCH Confidence 11222211 02343211 1111 No 211 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=29.78 E-value=1.6 Score=19.42 Aligned_cols=305 Identities=11% Similarity=0.057 Sum_probs=98.5 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhh- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNV- 79 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~- 79 (340) +.+.++....-.... .+.-..-..|... +++ .+. ..|....|+ .++..+.-+++.... ....+. T Consensus 29 ~~r~~~l~~YY~G~~---~i~~~~~~~~~~~---~~~----~~v--~n~~~~iVd--~~~~~l~~~g~~~~~-~~~~~~~ 93 (486) T protein:vir:42 29 SKDLASNTSYYDAER---RPEAIGVTVPREM---QQL----LAH--VGYPRLYVD--SVAERQAVEGFRLGD-ADEADEE 93 (486) T ss_pred HHHHHHHHHHhcccC---cchhcccccchhH---hhh----hhc--cchHHHHHH--HHHhhhcccceecCC-CchhHHH Confidence 000000000000000 0000000000000 000 000 001100010 000000111110000 000000 Q ss_pred HHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCce-------eEEEEEecCcceeecccCc---e-----EEEEe Q lcl|Aclame:pro 80 LASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQ-------LIKLLTSPAKYTRRGVDDS---V-----FWFVE 144 (340) Q Consensus 80 ~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~-------~~~L~pl~~~~~~~~~~~~---~-----~y~~~ 144 (340) +-..+..|.+ ......++.+.+.+|.||+.+.++..|. ...+.+++|..+....+.. . +|... T Consensus 94 ~~~i~~~N~~--d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~~~~~~~~~~~~~ 171 (486) T protein:vir:42 94 LWQWWQANNL--DIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRINRVSKAIRVAYDK 171 (486) T ss_pred HHHHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEeCCCCCeEEEEEEEEec Confidence 1111222221 1334567888999999999998865432 2356666665543322211 0 01000 Q ss_pred CCceE---EEEccc-------------------------cEEEecCCCCCCCcccccchh----hhHHHHHHHHHHHHHH Q lcl|Aclame:pro 145 NFTQP---HEFAPD-------------------------TVFHLLEPDINQEIYGLPEYL----SALNSAWLNESATLFR 192 (340) Q Consensus 145 ~~~~~---~~~~~~-------------------------dvih~r~~~~~~~~~G~sp~~----~a~~~i~~~~aa~~~~ 192 (340) .++.. ..+.++ .|++|++..-..+.+|.|.+. .+..++....+-. T Consensus 172 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~--- 248 (486) T protein:vir:42 172 EGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLM--- 248 (486) T ss_pred CCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHHH--- Confidence 01100 001111 355555332234567887654 3333333322211 Q ss_pred HHHHHccCCCceEEEeCCCCcCHHHHH--HHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHHHHHHhh Q lcl|Aclame:pro 193 RKYYQNGAHAGYIMYVTDPAQSATDVE--SLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKAS 270 (340) Q Consensus 193 ~~~f~NG~~p~gil~~~~~~~~~e~~~--~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~ 270 (340) ....+-.+.|--+|. +...+....+ .-...|+. ..++++++. + ++.++..+..... .-|++..+.. T Consensus 249 ~~~~e~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~---~~~~~~q~~~~~~-e~~~~~l~~~ 316 (486) T protein:vir:42 249 QATAELMGVPQRLIF--GIKPEEIGVDSETGQTLFDA-----YLARILAFE-D---AEGKIQQFSAAEL-ANFTNALDQI 316 (486) T ss_pred HHHHHhhcchHHHhh--cCCccccccccccccchhhh-----hhchhcccC-C---CCceEEeecccCH-HHHHHHHHHH Confidence 122222233433332 2111111110 01111221 123344432 1 2345555543221 2377888888 Q ss_pred HHHHHHHhcCCHHHcccccccccccccHHHHHH----------HHHHHHHHHHHHHHHHHHHhhCccc---------eee Q lcl|Aclame:pro 271 AADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK----------VFVRNELSPLQDRFREVNDWLGMEV---------IRF 331 (340) Q Consensus 271 ~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~----------~f~~~~l~P~~~~ie~ln~~l~~~~---------~rf 331 (340) ...++.+=++|++.+|....+.++...+..... ..+...|.-++..+.. .++..- ++| T Consensus 317 i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~---~~~~~~~~~d~~~i~v~w 393 (486) T protein:vir:42 317 AKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYR---IMKGGDVPPDMLRMETVW 393 (486) T ss_pred HHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCCccccceeeeEEe Confidence 888888899999998864432222111111111 1111122222211111 111110 122 Q ss_pred cccccCCCC Q lcl|Aclame:pro 332 KEYTLDNPE 340 (340) Q Consensus 332 ~~~~l~~~~ 340 (340) .+-...+.- T Consensus 394 ~~~~~~s~~ 402 (486) T protein:vir:42 394 RDPSTPTYA 402 (486) T ss_pred cCCCCCCHH Confidence 211000000 No 212 >protein:vir:101418 Length: 569 # NCBI annotation: Prt # Family: family:all:9458 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006480;genbank:gi:46401636;genbank:GeneID:2777482 Probab=27.56 E-value=1.8 Score=19.14 Aligned_cols=329 Identities=12% Similarity=0.091 Sum_probs=113.5 Q ss_pred CCCCCCCcccccccCCcc--ceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhh---- Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQ--KMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIY---- 74 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~--~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~---- 74 (340) |-+--.++... ++.+-+ -.+.|-|+.-++-.++.+++...+....+..+....++..-+.+--. ..-+..+. T Consensus 53 ~~~~~~~~~~~-t~~~D~~~~g~~~~~~~~~~pr~R~qiY~~~eeM~~~p~Ia~AlniHVtaALggd-e~TGd~vfI~p~ 130 (569) T protein:vir:10 53 SGFLGGKPGDS-GMAGDGLVDGSRFIFDEVQLPEDRLQRYPLLEEMAVYSTIATALNIHITHALSFD-KKTGQTFSIVPV 130 (569) T ss_pred hhhhccCcccc-chhhhhHHHHHHHHhhhccCchhHHHHHHHHHHHhcCchhhhhhhhhhheeeccc-ccccceEEEEee Confidence 11111111110 000000 00112222222222333333222222222222222221110000000 00000000 Q ss_pred --------hhhhhHHHhhhc--cCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEE---ecCcceeecccCce-- Q lcl|Aclame:pro 75 --------VKRNVLASTYIP--HPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLT---SPAKYTRRGVDDSV-- 139 (340) Q Consensus 75 --------~k~n~~~~~~~p--np~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~p---l~~~~~~~~~~~~~-- 139 (340) +++..+...... -|+.. .....++++...||.+|+.+--+..-.++.|+. ..|.-+.+...++. T Consensus 131 ~~~~~a~~daakai~~el~~dl~~~iN-r~~~~lA~~~~aFGdsYaRiY~~~~~GV~dl~~s~yt~PsfIqpFE~g~~tv 209 (569) T protein:vir:10 131 HNGNDSDYDAAQALCGELMNDIGRTIN-KEVAGWAFIMSVFGVAYVRPYAKEGIGITSFECSYYTLPSFIKEFEVSGNLA 209 (569) T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhhhhhheeeeccCCceeEEEEecccccccccchhhhcCceE Confidence 000000000000 00111 122356677889999999997765444666553 22333333322221 Q ss_pred -E---EEEeCCceEEEEccccEEEecCC----------------------CC------CCCcccccchhhhHHHH----- Q lcl|Aclame:pro 140 -F---WFVENFTQPHEFAPDTVFHLLEP----------------------DI------NQEIYGLPEYLSALNSA----- 182 (340) Q Consensus 140 -~---y~~~~~~~~~~~~~~dvih~r~~----------------------~~------~~~~~G~sp~~~a~~~i----- 182 (340) | |.....++.....+-.++-+|.| +. .-..||-|-+..+-... T Consensus 210 GF~~~~~~~~~~ti~~l~p~qm~rmKmPrm~~i~q~~~v~~g~~~~~L~~d~~~~~Pi~psn~GgSFL~~ae~pf~~l~~ 289 (569) T protein:vir:10 210 GFSGDYLKDASGKMVFADPWAIIPMKIPYWRPKSNLMPVHTGHKAYSLLDNPEERTPIETQNYGTSLLEYAYEPYMNLRS 289 (569) T ss_pred EeecccCCccccceeeechhhhhhhcccceeeccccchhhhhhhheeecccccccccccchhhhhHHHHHHHhHHHHHHH Confidence 0 10000111111111111111110 00 01236777766664332 Q ss_pred -HHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHH-----------HHHHHHH-hcCccccccccc-ccCCc--cc Q lcl|Aclame:pro 183 -WLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVES-----------LRDAMRN-SKGLGNFKNLFF-YSPNG--KP 246 (340) Q Consensus 183 -~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~-----------l~~~~~~-~~g~~n~~~~~v-l~~~~--~~ 246 (340) .....+++++.. .-.-+|.+.-..+++++... -++++++ ..|+.+...+.. +.|-. +. T Consensus 290 Al~sL~~qri~dS------v~~~~Itlnm~gM~p~qr~~y~r~lt~~LKr~~d~ie~a~~gg~~~~~~~~H~LPv~gekq 363 (569) T protein:vir:10 290 AIRSLKATRFNAS------KIDRIIGLAMNSLDPVKAADYSRTITQTLKRAADLMERRARGANNMPTVTNTLLPIMGDGK 363 (569) T ss_pred HHHhccchhhHHH------HHhHHhhccccCCCHHHHhHHHHHHHHHHHHHHHHHHHHhccCccccccceeeeeeecCcc Confidence 223333443322 22223333333466666532 3344443 345554433222 22222 22 Q ss_pred cccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccccccc------HHH--HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 247 DGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGD------VEK--VAKVFVRNELSPLQDRFR 318 (340) Q Consensus 247 ~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n------~e~--~~~~f~~~~l~P~~~~ie 318 (340) .++.+ .+..-+++.-=+|---+..+..|.+.|+.+.|||..+.-+|+.++ ..| .+..+.+..+.-++.++- T Consensus 364 ~~~tv-Dt~~~~A~~~gIEdvM~~~R~LagaLGlD~SMlGwAD~LsGGLGeGG~frtSaQaa~RS~~iRqa~~e~in~ii 442 (569) T protein:vir:10 364 GQMTI-DTQTIQADINGIEDILTYMRQLAAALGLDYTLLGWADQMSGGLGEGGFLRTAIQAAMRASWIQQGVEEFIQRAI 442 (569) T ss_pred ccccc-cccccccCcccHHHHHHHHHHHHhhhccchhHhhHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22222 222222332234445567889999999999999987754444332 222 122344444444444433 Q ss_pred H--HHHhhCccceee--ccc--ccCCCC Q lcl|Aclame:pro 319 E--VNDWLGMEVIRF--KEY--TLDNPE 340 (340) Q Consensus 319 ~--ln~~l~~~~~rf--~~~--~l~~~~ 340 (340) . ++-+.|+ ++.- .|| ++-++. T Consensus 443 diH~~fKYge-vf~~~drP~~V~F~s~~ 469 (569) T protein:vir:10 443 DIHLAFKYGK-VYPEGDRPYKIEFHSVN 469 (569) T ss_pred HHHhhhhcCc-ccCCCCcceEEEeccch Confidence 2 1222221 1000 011 111111 No 213 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=26.97 E-value=1.9 Score=19.07 Aligned_cols=296 Identities=11% Similarity=0.092 Sum_probs=109.2 Q ss_pred CCCCCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcchhhhhhhhhhhhhH Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVKRNVL 80 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~ 80 (340) ..+++..... ..... +. .+..-|- .+.+.. .+-...-|+.+.. -..+.+.. T Consensus 55 ~~~~~~~~~~--~~~~~-~~--~~~n~~k------~i~~~~----a~~l~~~p~~i~~--------------~d~~~~e~ 105 (496) T protein:vir:38 55 WHNLNYEHNG--NPVNR-RQ--LSMNLPK------VTAKYM----SKLLFNEKVKINI--------------DDKAAEEF 105 (496) T ss_pred hhcchhccCC--Ccccc-ce--eecchHH------HHHHHH----hhhhhCCcceEee--------------CChHHHHH Confidence 1111100000 00000 00 0000000 000000 0000000111100 00011111 Q ss_pred HH-hhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeec-----------------ccCceEEE Q lcl|Aclame:pro 81 AS-TYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRG-----------------VDDSVFWF 142 (340) Q Consensus 81 ~~-~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~-----------------~~~~~~y~ 142 (340) +. .+.. ......+..++.+....|.+|+.+..|..|++ .+..++|..+-+. .++..|+. T Consensus 106 l~~~~~~--n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~~~~~~P~~~~~~~~~~~~f~~~~~~~~~~y~~ 182 (496) T protein:vir:38 106 VLNVLKT--NGFTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADCMYPLSNDSENVDECVIANSFHKNNKYYTL 182 (496) T ss_pred HHHHHhc--cCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcE-EEEEEcccceEEEEecCCcEEEEEEEEEEEeCCeEEEE Confidence 11 1111 11223466778888999999999999887764 3444444432211 11111211 Q ss_pred Ee----CC------------------ceEEEE-------ccc------c---EEEecCCCCC----CCcccccchhhhHH Q lcl|Aclame:pro 143 VE----NF------------------TQPHEF-------APD------T---VFHLLEPDIN----QEIYGLPEYLSALN 180 (340) Q Consensus 143 ~~----~~------------------~~~~~~-------~~~------d---vih~r~~~~~----~~~~G~sp~~~a~~ 180 (340) +. .+ |..+.+ .+. + +.+++.+.++ ...+|+|.+..+.. T Consensus 183 le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~ 262 (496) T protein:vir:38 183 LEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALD 262 (496) T ss_pred EEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEecCCcccccccCCcCCCchHhhHHH Confidence 10 00 011000 000 1 2344433221 23579999988877 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcc------cccccccccCCccccccceeec Q lcl|Aclame:pro 181 SAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLG------NFKNLFFYSPNGKPDGIKIVPL 254 (340) Q Consensus 181 ~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~------n~~~~~vl~~~~~~~g~~~~pl 254 (340) .+..-..+..-..+-|+.| ++..+ ++...+. ... ...|.. +-.............+-.++.+ T Consensus 263 lid~ld~~~s~~~~~~~~~-~~~i~--v~~~~l~-----~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 330 (496) T protein:vir:38 263 TLKTLDLMFDSYYQEFKLG-KKKVL--VPSSFVK-----TAV----NLDGSTTQYFDSTDEAFFLYQGDQDDNGKAIKDI 330 (496) T ss_pred HHHHHHHHHHHHHHHHhhc-cccee--cchHHhh-----ccC----CCCCccccCCCCccceEEEeecCCCcccccceee Confidence 7755444433333345544 33322 2221110 000 000000 0000011111111122234444 Q ss_pred cchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHH----------HHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 255 SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVA----------KVFVRNELSPLQDRFREVNDWL 324 (340) Q Consensus 255 ~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~----------~~f~~~~l~P~~~~ie~ln~~l 324 (340) +..-...++.+.-+....+|+..-|+||..+|....+..|...+.... +..++..|..++..+.++-..+ T Consensus 331 ~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~ 410 (496) T protein:vir:38 331 SVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKFI 410 (496) T ss_pred ccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 444455678888888889999999999999987543222211111111 1222333444444443322211 Q ss_pred ----C---c--cc-eeecccccCCCC Q lcl|Aclame:pro 325 ----G---M--EV-IRFKEYTLDNPE 340 (340) Q Consensus 325 ----~---~--~~-~rf~~~~l~~~~ 340 (340) | . ++ +.|++.-..+.+ T Consensus 411 ~~~~g~~~~~~~i~v~f~d~i~~d~~ 436 (496) T protein:vir:38 411 EAYSGEVVELDTITVDFDDSIAQDED 436 (496) T ss_pred HhhcCCCCCccceEEEeCCCCCCCHH Confidence 1 0 11 335443333322 No 214 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=26.94 E-value=1.9 Score=19.06 Aligned_cols=285 Identities=13% Similarity=0.129 Sum_probs=118.8 Q ss_pred CCC--------------CCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSK--------------RKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~--------------~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) .-+ ++++.+..-++.-......+.|++|..+.-. T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~~~-------------------------------- 97 (500) T protein:vir:30 50 KSDWDSVLYLNTDGETKKRDLNHLPIARTAAKKIASLVFNEQAEIKVD-------------------------------- 97 (500) T ss_pred cCCCCCcccccCCCCcccCceeecchHHHHHHHHhhhhcCCcceEecC-------------------------------- Confidence 100 0000011111111111112333443321100 Q ss_pred hhhhhhhhhhhhhHHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeec----------- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRG----------- 134 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~----------- 134 (340) ....+..+.. +..| .....+...+.+.+..|.+++.+..+. |+ +.+..+++..+-+. T Consensus 98 -------d~~~~~~l~~il~~n--~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~I~~v~ad~~~P~~~d~~~~~~~a 166 (500) T protein:vir:30 98 -------DDAANEFISETLKND--RFNKNFERYLESCLALGGLAMRPYVDG-DK-VRVAFVQAPVFLPLQSNTQDVSSAA 166 (500) T ss_pred -------ChHHHHHHHHHHhhc--cHHHHHHHHHHHHhhcCCEEEEEEEeC-Cc-eEEEEEcCCeeEEEEEcCCCeEEEE Confidence 0001100100 0111 112345666777778888888776664 33 23444444432210 Q ss_pred ---------ccCceEEEE---e--CCceE--E---EEc--------------------ccc----------EEEecCCCC Q lcl|Aclame:pro 135 ---------VDDSVFWFV---E--NFTQP--H---EFA--------------------PDT----------VFHLLEPDI 165 (340) Q Consensus 135 ---------~~~~~~y~~---~--~~~~~--~---~~~--------------------~~d----------vih~r~~~~ 165 (340) ...+.||.. . .++.. + .|. +++ ..|++.+.+ T Consensus 167 ~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f~~~~~~~~ 246 (500) T protein:vir:30 167 VVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIFTYLKTPGM 246 (500) T ss_pred EEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccEEEecCCcc Confidence 012222210 0 00100 0 000 011 235554433 Q ss_pred C----CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHH----HHHHH-HHHHHHhcCcccccc Q lcl|Aclame:pro 166 N----QEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSAT----DVESL-RDAMRNSKGLGNFKN 236 (340) Q Consensus 166 ~----~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e----~~~~l-~~~~~~~~g~~n~~~ 236 (340) + +..+|+|.+..+...+......-.-...-|+-|-+ .. .++...+... .-+.+ ...+ +-..+ T Consensus 247 N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~-~i--~v~~~~l~~~~~~~~g~~~~~~~~------d~~~~ 317 (500) T protein:vir:30 247 NNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQR-RV--AVPESLTALTVRTTDGDVVPRPRF------ESDQN 317 (500) T ss_pred ccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcc-ee--eechHHhcccCCCCCccccCCccc------CCCcc Confidence 2 23579999999988886544444444455565543 22 2222111000 00000 0000 00112 Q ss_pred cccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH-------------HH Q lcl|Aclame:pro 237 LFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV-------------AK 303 (340) Q Consensus 237 ~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~-------------~~ 303 (340) +++..++...++-.++.++..-.+.++.+..+...++|+..-|++|..+|....+. .++.+. .+ T Consensus 318 ~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~---~TAtei~s~~~~~~~t~~~~~ 394 (500) T protein:vir:30 318 VYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSM---KTATEIVSENSDTYQMRNSIV 394 (500) T ss_pred eEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCcc---ccHHHHHHHHHHHHHHHHHHH Confidence 22222222223334555555556888999999999999999999999998754322 233332 22 Q ss_pred HHHHHHHHHHHHHHHHHHHh---hC----c--c-ceeecccccCCCC Q lcl|Aclame:pro 304 VFVRNELSPLQDRFREVNDW---LG----M--E-VIRFKEYTLDNPE 340 (340) Q Consensus 304 ~f~~~~l~P~~~~ie~ln~~---l~----~--~-~~rf~~~~l~~~~ 340 (340) ..++.+|.-++..|.++... .+ . + .+.|++..+.+.+ T Consensus 395 ~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~ 441 (500) T protein:vir:30 395 ALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRD 441 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHH Confidence 23344455554444433221 11 1 1 1557776666655 No 215 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=26.94 E-value=1.9 Score=19.06 Aligned_cols=285 Identities=13% Similarity=0.129 Sum_probs=118.8 Q ss_pred CCC--------------CCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSK--------------RKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~--------------~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) .-+ ++++.+..-++.-......+.|++|..+.-. T Consensus 50 ~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~~~~A~lv~~e~~~i~~~-------------------------------- 97 (500) T protein:vir:98 50 KSDWDSVLYLNTDGETKKRDLNHLPIARTAAKKIASLVFNEQAEIKVD-------------------------------- 97 (500) T ss_pred cCCCCCcccccCCCCcccCceeecchHHHHHHHHhhhhcCCcceEecC-------------------------------- Confidence 100 0000011111111111112333443321100 Q ss_pred hhhhhhhhhhhhhHHHh-hhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeec----------- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLAST-YIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRG----------- 134 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~~-~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~----------- 134 (340) ....+..+.. +..| .....+...+.+.+..|.+++.+..+. |+ +.+..+++..+-+. T Consensus 98 -------d~~~~~~l~~il~~n--~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~I~~v~ad~~~P~~~d~~~~~~~a 166 (500) T protein:vir:98 98 -------DDAANEFISETLKND--RFNKNFERYLESCLALGGLAMRPYVDG-DK-VRVAFVQAPVFLPLQSNTQDVSSAA 166 (500) T ss_pred -------ChHHHHHHHHHHhhc--cHHHHHHHHHHHHhhcCCEEEEEEEeC-Cc-eEEEEEcCCeeEEEEEcCCCeEEEE Confidence 0001100100 0111 112345666777778888888776664 33 23444444432210 Q ss_pred ---------ccCceEEEE---e--CCceE--E---EEc--------------------ccc----------EEEecCCCC Q lcl|Aclame:pro 135 ---------VDDSVFWFV---E--NFTQP--H---EFA--------------------PDT----------VFHLLEPDI 165 (340) Q Consensus 135 ---------~~~~~~y~~---~--~~~~~--~---~~~--------------------~~d----------vih~r~~~~ 165 (340) ...+.||.. . .++.. + .|. +++ ..|++.+.+ T Consensus 167 ~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~~~~~~p~f~~~~~~~~ 246 (500) T protein:vir:98 167 VVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKVTDVTRPIFTYLKTPGM 246 (500) T ss_pred EEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEeccCCCccEEEecCCcc Confidence 012222210 0 00100 0 000 011 235554433 Q ss_pred C----CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHH----HHHHH-HHHHHHhcCcccccc Q lcl|Aclame:pro 166 N----QEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSAT----DVESL-RDAMRNSKGLGNFKN 236 (340) Q Consensus 166 ~----~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e----~~~~l-~~~~~~~~g~~n~~~ 236 (340) + +..+|+|.+..+...+......-.-...-|+-|-+ .. .++...+... .-+.+ ...+ +-..+ T Consensus 247 N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~-~i--~v~~~~l~~~~~~~~g~~~~~~~~------d~~~~ 317 (500) T protein:vir:98 247 NNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQR-RV--AVPESLTALTVRTTDGDVVPRPRF------ESDQN 317 (500) T ss_pred ccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcc-ee--eechHHhcccCCCCCccccCCccc------CCCcc Confidence 2 23579999999988886544444444455565543 22 2222111000 00000 0000 00112 Q ss_pred cccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH-------------HH Q lcl|Aclame:pro 237 LFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV-------------AK 303 (340) Q Consensus 237 ~~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~-------------~~ 303 (340) +++..++...++-.++.++..-.+.++.+..+...++|+..-|++|..+|....+. .++.+. .+ T Consensus 318 ~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~---~TAtei~s~~~~~~~t~~~~~ 394 (500) T protein:vir:98 318 VYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSM---KTATEIVSENSDTYQMRNSIV 394 (500) T ss_pred eEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCcc---ccHHHHHHHHHHHHHHHHHHH Confidence 22222222223334555555556888999999999999999999999998754322 233332 22 Q ss_pred HHHHHHHHHHHHHHHHHHHh---hC----c--c-ceeecccccCCCC Q lcl|Aclame:pro 304 VFVRNELSPLQDRFREVNDW---LG----M--E-VIRFKEYTLDNPE 340 (340) Q Consensus 304 ~f~~~~l~P~~~~ie~ln~~---l~----~--~-~~rf~~~~l~~~~ 340 (340) ..++.+|.-++..|.++... .+ . + .+.|++..+.+.+ T Consensus 395 ~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~ 441 (500) T protein:vir:98 395 ALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRD 441 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHH Confidence 23344455554444433221 11 1 1 1557776666655 No 216 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=26.53 E-value=1.9 Score=19.01 Aligned_cols=297 Identities=9% Similarity=0.044 Sum_probs=99.0 Q ss_pred CCceeecCcchhhhee--------------eeeecCc--hhhcccch-HHhhhhhhcchhhhhhhhhhhhhHH--Hhhhc Q lcl|Aclame:pro 26 GEPVPVLDKRDILDYV--------------ECISNGK--WYEPPVSF-SGLAKSLRSAVHHSSPIYVKRNVLA--STYIP 86 (340) Q Consensus 26 ~~p~~~~~~~~~~~~~--------------~~~~~~~--~~~~pv~~-~~l~~~~r~~~~~~~~i~~k~n~~~--~~~~p 86 (340) -.+...++..++++++ .-++.|. +-..|... ..+....-...++.-++...+..+. ....+ T Consensus 1 ~~~~~~~d~~~~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf~~~ 80 (488) T protein:vir:23 1 MAETESIDPEKLRDQLLDAFENKQNELKSSKAYYDAERRPDAIGLAVPLDMRKYLAHVGYPRTYVDAIAERQELEGFRIP 80 (488) T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcCcccchhhhhhhhhcchHHHHHHHHHHhhhccceecc Confidence 0000011111121111 0011111 10111111 0111111112223333322221110 00111 Q ss_pred cCC-----------------------CcHHHHHHHHHHHHHhCCeeEEEEecC--------CceeEEEEEecCcceeecc Q lcl|Aclame:pro 87 HPL-----------------------LSRQDFSRFALDYLVFGNAFLEQRHSV--------TGQLIKLLTSPAKYTRRGV 135 (340) Q Consensus 87 np~-----------------------~~~~~~~~~~~~~ll~Gnay~~i~r~~--------~G~~~~L~pl~~~~~~~~~ 135 (340) .+. -.......+..+.+.+|.||+.+.++. .|. ..+..++|..+.... T Consensus 81 ~~~~~~~~~~~d~~~~~~l~~i~~~N~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~-~~i~~~~p~~~~~~~ 159 (488) T protein:vir:23 81 SANGEEPESGGENDPASELWDWWQANNLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEV-PLIRVEPPTALYAEV 159 (488) T ss_pred CCcccccccccchhHHHHHHHHHHhcChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCc-ceEEEeccceeEEEE Confidence 110 011223455678899999999887643 222 235556655433221 Q ss_pred cCc--------eEEEEeCCceE---EEEccc-------------------------cEEEecCCCCCCCcccccchhh-- Q lcl|Aclame:pro 136 DDS--------VFWFVENFTQP---HEFAPD-------------------------TVFHLLEPDINQEIYGLPEYLS-- 177 (340) Q Consensus 136 ~~~--------~~y~~~~~~~~---~~~~~~-------------------------dvih~r~~~~~~~~~G~sp~~~-- 177 (340) +.. ++|.-..++.. ..+.++ .|++|++..-..+.+|.|.+.- T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v 239 (488) T protein:vir:23 160 DPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPEL 239 (488) T ss_pred ecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCcCCccchhhhH Confidence 110 00100011100 011111 2566654332345678886642 Q ss_pred --hHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHH--HHHHHHHHhcCcccccccccccCCccccccceee Q lcl|Aclame:pro 178 --ALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVE--SLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVP 253 (340) Q Consensus 178 --a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~--~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~p 253 (340) +..++....+-..-...||. .|--+| .+..+++...+ .-...|+... ++++++++|. ..++.. T Consensus 240 ~~l~Da~~~~~s~~~~~~~~~a---~p~~~i--~G~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~g~---~~~~~q 306 (488) T protein:vir:23 240 RSVTDAAAQILMNMQGTANLMA---IPQRLI--FGAKPEELGINAETGQRMFDAYM-----ARILAFEGGE---GAHAEQ 306 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHhh---hHHHHH--hCCCcccccccccccchhhhhhh-----hhhccCCCCC---CceeEe Confidence 22222222211111122222 222222 22111111111 0111222221 2344444332 345555 Q ss_pred ccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHH----------HHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 254 LSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVF----------VRNELSPLQDRFREVNDW 323 (340) Q Consensus 254 l~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f----------~~~~l~P~~~~ie~ln~~ 323 (340) +...+ -..|++..+....+|+..=++|++.+|....+.++..-+......+ +...|.-++..+.. . T Consensus 307 ~~~~~-~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~---~ 382 (488) T protein:vir:23 307 FSAAE-LRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYK---M 382 (488) T ss_pred cCCCC-hHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H Confidence 54332 2247888888889999999999999876433222111111111111 11111111111111 1 Q ss_pred hCccc---------eeecccccCCCC Q lcl|Aclame:pro 324 LGMEV---------IRFKEYTLDNPE 340 (340) Q Consensus 324 l~~~~---------~rf~~~~l~~~~ 340 (340) ++..- +.|.+-...+.. T Consensus 383 ~~~~~~~~~~~~i~v~f~~~~~~s~~ 408 (488) T protein:vir:23 383 VKGGDIPTEYYRMETVWRDPSTPTYA 408 (488) T ss_pred hcCCCcchhhccceEEecCCCCCCHH Confidence 11100 122211111000 No 217 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=24.20 E-value=2.2 Score=18.70 Aligned_cols=293 Identities=10% Similarity=0.038 Sum_probs=104.7 Q ss_pred EEECCCceeecCcchhhheee-----ee--------ecCchhhc--------ccchHHhhhhhh---cchhhhhhhhhhh Q lcl|Aclame:pro 22 AFTFGEPVPVLDKRDILDYVE-----CI--------SNGKWYEP--------PVSFSGLAKSLR---SAVHHSSPIYVKR 77 (340) Q Consensus 22 ~~~f~~p~~~~~~~~~~~~~~-----~~--------~~~~~~~~--------pv~~~~l~~~~r---~~~~~~~~i~~k~ 77 (340) .+.|- ..-++..++..++. .. ...+||+- +.......+.++ ...++.-++.... T Consensus 1 ~~~~p--~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~iVd~~~ 78 (479) T protein:vir:99 1 MIDLP--DEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMGLMVNSFA 78 (479) T ss_pred CccCC--cccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCcccccccccCChhHHHHHHHhhcCcHHHHHHHHH Confidence 22221 12233333222211 00 00112211 000001111110 1122222222211 Q ss_pred hhH----------------HHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEe-----cCCceeEEEEEecCcceeeccc Q lcl|Aclame:pro 78 NVL----------------ASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRH-----SVTGQLIKLLTSPAKYTRRGVD 136 (340) Q Consensus 78 n~~----------------~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r-----~~~G~~~~L~pl~~~~~~~~~~ 136 (340) ..+ ...+.-|.+ ......++.+.+.+|.||+.+.. +..|.+ .+..++|..+....+ T Consensus 79 ~~l~~~gf~~~d~~~~~~~~~i~~~N~~--d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~-~i~~~~p~~~~~iyd 155 (479) T protein:vir:99 79 QQLIVDGYRKTGTNENAKGWDTWRLNQM--DKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA-RIKCIDPRDAFAIWE 155 (479) T ss_pred hhcccccccCCCchhhHHHHHHHHhcCh--hHHHHHHHHHHhhcCceEEEEecCCCCcCCCCce-EEEEechhheEEEec Confidence 110 001111111 12234566788999999998874 334443 455666654432211 Q ss_pred C-c----eEEEEe--------------------CCceEE-------EEccccEEEecCCCCCCCcccccchhhhHHHHHH Q lcl|Aclame:pro 137 D-S----VFWFVE--------------------NFTQPH-------EFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWL 184 (340) Q Consensus 137 ~-~----~~y~~~--------------------~~~~~~-------~~~~~dvih~r~~~~~~~~~G~sp~~~a~~~i~~ 184 (340) . . ..|.+. ..+... .+..=.|++|++..-. +-+|.|.+......++. T Consensus 156 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e~v~~liDa 234 (479) T protein:vir:99 156 DPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDL-RGVCYGDVEPLVTVAKA 234 (479) T ss_pred CCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCc-CcCCcchhHHHHHHHHH Confidence 0 0 001110 111100 0111125676643212 23688877766555555 Q ss_pred HHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeeccchhhHHHHH Q lcl|Aclame:pro 185 NESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFF 264 (340) Q Consensus 185 ~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl~~~~~d~qf~ 264 (340) ...+..-......-.+.|-.+|. +..+.++... -...++. ..++++... + .+.++..+.... -..|+ T Consensus 235 ~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~-~~~~~~~-----~~~~i~~~~-~---~~~~~~q~~~~~-~~~~~ 301 (479) T protein:vir:99 235 IDKTGLDILLVQHHQSFQIRWAT--GLMLPEGANA-DQEKMRF-----AQESMLISQ-N---EKASFGAIPAAP-LDGLL 301 (479) T ss_pred HHHHHHHHHHHHHHhhchhhhhc--CCCccccccc-chhcccc-----ccccceeec-C---CCceEEEecccc-hHHHH Confidence 44444333334444455554442 3222211111 1111111 112333332 2 234555544211 12367 Q ss_pred HHHHhhHHHHHHHhcCCHHHcccccccccccccHHHHHHHHHHHHHHHHHHH--------HHHHHH----hhCcc----- Q lcl|Aclame:pro 265 NIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDR--------FREVND----WLGME----- 327 (340) Q Consensus 265 e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~~~~f~~~~l~P~~~~--------ie~ln~----~l~~~----- 327 (340) +..+....+|+++=++|++.+|...+ ++ .+... +....|.=.+.. |+++.+ ..+.. T Consensus 302 ~~l~~~i~~i~~~t~~p~~~~g~~~n--~S---g~Al~--~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~~~~~~~ 374 (479) T protein:vir:99 302 NAYKESLLEFLALAQLPPHIAGQIVN--VA---ADALA--AGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGRTEEATD 374 (479) T ss_pred HHHHHHHHHHhccCCCCHHHcccccc--hH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc Confidence 77777788888888999999986422 11 11111 211111111111 111111 11111 Q ss_pred ---ceeecccccCCCC Q lcl|Aclame:pro 328 ---VIRFKEYTLDNPE 340 (340) Q Consensus 328 ---~~rf~~~~l~~~~ 340 (340) -+.|.+-...+.- T Consensus 375 ~~i~~~w~~~~~~s~~ 390 (479) T protein:vir:99 375 LDFTITWQDVTIQSLA 390 (479) T ss_pred eeeeEEecCCCCCCHH Confidence 0123221111100 No 218 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=24.02 E-value=2.2 Score=18.67 Aligned_cols=282 Identities=9% Similarity=0.067 Sum_probs=118.0 Q ss_pred CCC--------------CCCCcccccccCCccceEEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhhhhcc Q lcl|Aclame:pro 1 MSK--------------RKPRKAVAMTASAPQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSA 66 (340) Q Consensus 1 m~~--------------~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~~r~~ 66 (340) .-+ +|.+.+..-++.-......+.|++|..+. +..+ T Consensus 51 ~g~~~~~~~~~~~~~~~~~~~~sln~~~~i~~~~A~lv~~e~~~i~----------v~~~-------------------- 100 (508) T protein:vir:15 51 SDKLQYIHYQASDGIKKKRLKNTINMAKTAARRIASVVFNEKAEIH----------VKDN-------------------- 100 (508) T ss_pred cCCCcccccccCCCCccccceeecchHHHHHHHHHhhhhCCCceEE----------eCCc-------------------- Confidence 000 00000000000000011112222221110 0000 Q ss_pred hhhhhhhhhhhhhHHH-hhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeec----------- Q lcl|Aclame:pro 67 VHHSSPIYVKRNVLAS-TYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRG----------- 134 (340) Q Consensus 67 ~~~~~~i~~k~n~~~~-~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~----------- 134 (340) ...+..+. .+..|. ....+...+.+.+..|.+++.+..+.. + +.+..+++..+-+. T Consensus 101 --------~~~~e~l~~il~~n~--f~~~~~~~~e~a~a~G~~~~k~~~d~~-~-~~i~~v~ad~~~P~~~d~~~~~~~a 168 (508) T protein:vir:15 101 --------NEADKFLNDVLEDND--FKNKFEEALEKGVALGGFAMRPYIDGN-H-IKIAWVRADQFYPLQSNTNDISEAA 168 (508) T ss_pred --------hHHHHHHHHHHHhcc--HHHHHHHHHHHHhhcCceEEEEEEeCC-e-eEEEEEcCCeeEEEEEcCCCeEEEE Confidence 00010000 111111 123355667777888888887776643 2 33444444332110 Q ss_pred ---------ccCceEEEE-----e-CC------------------ceEEEEc--------ccc----------EEEecCC Q lcl|Aclame:pro 135 ---------VDDSVFWFV-----E-NF------------------TQPHEFA--------PDT----------VFHLLEP 163 (340) Q Consensus 135 ---------~~~~~~y~~-----~-~~------------------~~~~~~~--------~~d----------vih~r~~ 163 (340) ...+.+|.. . .+ |..+.+. +++ ..||+.+ T Consensus 169 f~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p~f~y~~~~ 248 (508) T protein:vir:15 169 IASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTP 248 (508) T ss_pred EEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCCcceeEEecCC Confidence 011122210 0 00 1111000 001 2345443 Q ss_pred CCC----CCcccccchhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC--HHHHHHHHHHHHHhcCccccccc Q lcl|Aclame:pro 164 DIN----QEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS--ATDVESLRDAMRNSKGLGNFKNL 237 (340) Q Consensus 164 ~~~----~~~~G~sp~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~--~e~~~~l~~~~~~~~g~~n~~~~ 237 (340) -++ +..+|+|.+..+...+......-.-..+-|+.|- +..++ +...+. ++... .+ +...+. T Consensus 249 ~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~-~~i~v--~~~~l~~d~~~~~----~~------~~~~~~ 315 (508) T protein:vir:15 249 GANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQ-KHIAV--QPGMLRFDDEHKP----TF------DTEQNV 315 (508) T ss_pred ccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcc-cceee--chHHhcCCCCCcc----cc------CCCCee Confidence 332 2457999999988888655544444445556553 33333 222111 11000 01 111222 Q ss_pred ccccCCccccccceeeccchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHHHH-------------HHH Q lcl|Aclame:pro 238 FFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKV-------------AKV 304 (340) Q Consensus 238 ~vl~~~~~~~g~~~~pl~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e~~-------------~~~ 304 (340) +....+....|.+++.++..-.+.++.+.-+.....|....|++|..+|+...+. .+.+++ .+. T Consensus 316 ~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~---~TAtei~s~~~~~~~t~~~~~~ 392 (508) T protein:vir:15 316 YVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGV---KTATEVVSNNSMTYQTRSSYLT 392 (508) T ss_pred EEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCcc---ccHHHHHHHHHHHHHHHHHHHH Confidence 3222222234445666665567788999999999999999999999998754322 233332 122 Q ss_pred HHHHHHHHHHHHHHHHHHhhC-----------------ccc-eeecccccCCCC Q lcl|Aclame:pro 305 FVRNELSPLQDRFREVNDWLG-----------------MEV-IRFKEYTLDNPE 340 (340) Q Consensus 305 f~~~~l~P~~~~ie~ln~~l~-----------------~~~-~rf~~~~l~~~~ 340 (340) .++..|..++..|.++-+.++ .++ |.|++.-+.+.+ T Consensus 393 ~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~ 446 (508) T protein:vir:15 393 MVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKD 446 (508) T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHH Confidence 334444444444433222111 011 567776666666 No 219 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=23.74 E-value=2.3 Score=18.64 Aligned_cols=280 Identities=11% Similarity=0.058 Sum_probs=99.6 Q ss_pred CCCCCCCc------ccccccCCccce------------EEEECCCceeecCcchhhheeeeeecCchhhcccchHHhhhh Q lcl|Aclame:pro 1 MSKRKPRK------AVAMTASAPQKM------------EAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKS 62 (340) Q Consensus 1 m~~~~~~~------~~~~~~~~~~~~------------~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~l~~~ 62 (340) .+++++.. ......+ ..++ ..|.||+|..+ T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~-~~ri~~n~~~~ivd~~~~yl~g~~~~~------------------------------- 107 (503) T protein:vir:59 60 EKKRRTYYDAAGQQLVDDTKT-NNRTSHAWHKLFVDQKTQYLVGEPVTF------------------------------- 107 (503) T ss_pred hhccchhcccccccccccccc-cceeecchHHHHHHHHHhhhhcCCeee------------------------------- Confidence 11111100 0000000 0000 01222222111 Q ss_pred hhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCceeEEEEEecCcceeecccCc---- Q lcl|Aclame:pro 63 LRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS---- 138 (340) Q Consensus 63 ~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G~~~~L~pl~~~~~~~~~~~~---- 138 (340) ++-..+.......+..|. .......++.+.+.+|.+|+.+..+..|++ .+..++|..+-+..+.. T Consensus 108 --------~~~d~~~~~~l~~~~~n~--~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~ 176 (503) T protein:vir:59 108 --------TSDNKTLLEYVNELADDD--FDDILNETVKNMSNKGIEYWHPFVDEEGEF-DYVIFPAEEMIVVYKDNTRRD 176 (503) T ss_pred --------ccCcHHHHHHHHHHHhcC--HHHHHHHHHHHHhhCCeEEEEEeecCCCce-EEEEEccceeEEEEeCCCCCc Confidence 001111122222222232 123445677889999999999999888875 46677776544332211 Q ss_pred -----eEEEEeC-Cce----EEEEccccEEEecCC------------------------------CC----CCCcccccc Q lcl|Aclame:pro 139 -----VFWFVEN-FTQ----PHEFAPDTVFHLLEP------------------------------DI----NQEIYGLPE 174 (340) Q Consensus 139 -----~~y~~~~-~~~----~~~~~~~dvih~r~~------------------------------~~----~~~~~G~sp 174 (340) ++|.... .+. ...+.++.|.++..- -| .+...|.|. T Consensus 177 ~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd 256 (503) T protein:vir:59 177 ILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSD 256 (503) T ss_pred eEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCCCCCcc Confidence 1222211 111 011222222222100 00 012247776 Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCcccccccccccCCccccccceeec Q lcl|Aclame:pro 175 YLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRDAMRNSKGLGNFKNLFFYSPNGKPDGIKIVPL 254 (340) Q Consensus 175 ~~~a~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~~e~~~~l~~~~~~~~g~~n~~~~~vl~~~~~~~g~~~~pl 254 (340) +..+...+..-..+..-....++..+.|-.+++ +....+ .......+.. .+++.+..++ ++++... T Consensus 257 ~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~--g~~~~~--~~~~~~~~~~-------~~~~~~~~~~---~~~~l~~ 322 (503) T protein:vir:59 257 LKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLK--NYDGEN--PKEFTANLRY-------HSVIKVSGDG---GVDTLRA 322 (503) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEee--cCCccc--cchhhhhhhc-------ccceeccCCC---cceeEec Confidence 666655555444333333444555666655553 322211 1111111211 1233333322 3444332 Q ss_pred cchhhHHHHHHHHHhhHHHHHHHhcCCHHHcccccccccccccHH----------HHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 255 SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVE----------KVAKVFVRNELSPLQDRFREVNDWL 324 (340) Q Consensus 255 ~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~~n~e----------~~~~~f~~~~l~P~~~~ie~ln~~l 324 (340) ......+.+..+.-.+.|...-++|..-.+...++ .+...++ +..+..+...|.-++..+.++-... T Consensus 323 --~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~~-~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~ 399 (503) T protein:vir:59 323 --EIPVDSAAKELERIQDELYKSAQAVDNSPETIGGG-ATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNT 399 (503) T ss_pred --cCCHHHHHHHHHHHHHHHHHHhcccCCCccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 22334455555666667766666664221111111 1111111 0111122222222222222211111 Q ss_pred Cc----c----ceeecccccCCCC Q lcl|Aclame:pro 325 GM----E----VIRFKEYTLDNPE 340 (340) Q Consensus 325 ~~----~----~~rf~~~~l~~~~ 340 (340) +. + -+.|.+....+.. T Consensus 400 ~~~~~~~~~~i~i~f~~~~p~d~~ 423 (503) T protein:vir:59 400 GKGDFNPDKELTMTFTRTRIQNDS 423 (503) T ss_pred cCcccccccceeEEeCCCCCCCHH Confidence 10 0 1223322111111 No 220 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=20.88 E-value=2.7 Score=18.22 Aligned_cols=324 Identities=14% Similarity=0.102 Sum_probs=134.4 Q ss_pred CCCCCCCcccccccCCccce----EEE--------ECCCceeecC-cchhh-he------eeeeec----------Cchh Q lcl|Aclame:pro 1 MSKRKPRKAVAMTASAPQKM----EAF--------TFGEPVPVLD-KRDIL-DY------VECISN----------GKWY 50 (340) Q Consensus 1 m~~~~~~~~~~~~~~~~~~~----~~~--------~f~~p~~~~~-~~~~~-~~------~~~~~~----------~~~~ 50 (340) ++++-..++.+...-++..+ ..+ .+++.++... ..++. .| =||.+. .+-. T Consensus 28 ~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaIv~~~~ 107 (524) T protein:vir:98 28 LKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLINTYRGIMSYPEVENAVSEIIDDAIVNEQG 107 (524) T ss_pred hcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHHHHHHHHHhhccchhhHHHhhhcceeEecCC Confidence 33332222222222111100 001 1222222111 11110 11 111110 0001 Q ss_pred hcccchHHhhhhhhcchhhhhhhhhhhhhHHHhhhccCCCcHHHHHHHHHHHHHhCCeeEEEEecCCc--eeEEEEEecC Q lcl|Aclame:pro 51 EPPVSFSGLAKSLRSAVHHSSPIYVKRNVLASTYIPHPLLSRQDFSRFALDYLVFGNAFLEQRHSVTG--QLIKLLTSPA 128 (340) Q Consensus 51 ~~pv~~~~l~~~~r~~~~~~~~i~~k~n~~~~~~~pnp~~~~~~~~~~~~~~ll~Gnay~~i~r~~~G--~~~~L~pl~~ 128 (340) ..||.+. |. +...+..+..|-...- ...-|-+.+..--..++..|.+.|..|..++-+.+. .+.+|..|+| T Consensus 108 ~~pV~l~-L~-----~~~~s~~iK~kI~eeF-~~Il~ll~F~~~~~~~fR~WYVDgRi~fhkiid~~~~kGI~ELr~lDP 180 (524) T protein:vir:98 108 KDIITMD-LA-----KTNFSKAIQDKIVEEF-DNVLNIYDFDNMGARLFRDWYVDSRIYFHKIMHKDESKGIRELRQLDP 180 (524) T ss_pred CceEEEE-ec-----ccccchHHHHHHHHHH-HHHHHHhccchhhhHHHhhhhhcceeEEEEEEcCCCCcceeeeeeeCC Confidence 1222221 00 0001111111111100 000111111111224456788999999999865433 3999999999 Q ss_pred cceeecc-------cCc--------eEEEEeC-------------CceEEEEccccEEEec--CCCCCCCcccccchhhh Q lcl|Aclame:pro 129 KYTRRGV-------DDS--------VFWFVEN-------------FTQPHEFAPDTVFHLL--EPDINQEIYGLPEYLSA 178 (340) Q Consensus 129 ~~~~~~~-------~~~--------~~y~~~~-------------~~~~~~~~~~dvih~r--~~~~~~~~~G~sp~~~a 178 (340) .+++..+ +++ -||.+.. -++.+.++.+.|.|.. ..+.+.++ +|-+..| T Consensus 181 r~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAIvy~hSGL~d~~~~i--isyLhkA 258 (524) T protein:vir:98 181 RCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSAIVYAHSGLEDCSNNI--IGYLHRA 258 (524) T ss_pred ccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhheeeeccCcccCCCCe--eeehhHh Confidence 8875432 111 1333321 1234567777888775 23333332 4666667 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCcC-HHHHHHHHHHHHHhc---------Cc-cccc-cccccc----- Q lcl|Aclame:pro 179 LNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQS-ATDVESLRDAMRNSK---------GL-GNFK-NLFFYS----- 241 (340) Q Consensus 179 ~~~i~~~~aa~~~~~~~f~NG~~p~gil~~~~~~~~-~e~~~~l~~~~~~~~---------g~-~n~~-~~~vl~----- 241 (340) ...+..-.-.++..-=|=-.-|.=.-|+++.=+.+. ..+.+=++.-+..++ |. .|.+ .+-+++ T Consensus 259 iKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGevrddrk~msMlEDyWLp 338 (524) T protein:vir:98 259 VKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDARTGTVKNQQNNLSMTEDYWLM 338 (524) T ss_pred hHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccCceeeccccccchhhhhccc Confidence 666655555555444333344555566666434443 344444555554433 21 2222 233332 Q ss_pred --CCccccccceeec--cchhhHHHHHHHHHhhHHHHHHHhcCCHHHccccccccccc---ccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 242 --PNGKPDGIKIVPL--SEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSL---GDVEKVAKVFVRNELSPLQ 314 (340) Q Consensus 242 --~~~~~~g~~~~pl--~~~~~d~qf~e~~~~~~~~I~~~f~VPp~~lG~~~~~~~~~---~n~e~~~~~f~~~~l~P~~ 314 (340) .||+ |.+++.| +.+.-+++=++ +-...+-++.+||.+.++..+ ++.+. +.+.-....|.+ -|.-+. T Consensus 339 RReGgr--gTEItTLpggqnlgem~DV~---YF~kkLy~aLnVP~sRl~~~~-~~f~~Gr~~EItRDEiKF~K-FI~rLR 411 (524) T protein:vir:98 339 RRDGKA--ITEVSTLPGGQNFSDMDDIK---WFNRKLYEALRVPLSRMPRDD-GGMQIGGGGEITRDELKFSK-FIRTLQ 411 (524) T ss_pred ccCCCC--ccceeeccccCCcChHHHHH---HHHHHHHHHhCCCceeccCCC-CccccccccchhHHHHHHHH-HHHHHH Confidence 2333 4444444 33333433333 345778899999999986432 12222 223333334443 366666 Q ss_pred HHHHHHHH-hhC-----ccceeec---------ccccCCCC Q lcl|Aclame:pro 315 DRFREVND-WLG-----MEVIRFK---------EYTLDNPE 340 (340) Q Consensus 315 ~~ie~ln~-~l~-----~~~~rf~---------~~~l~~~~ 340 (340) .++.++.. .|- -.++.=+ .|++...- T Consensus 412 ~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn 452 (524) T protein:vir:98 412 IQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDS 452 (524) T ss_pred HHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecc Confidence 67766332 221 1111111 12222211 Done!