Query lcl|Aclame:protein:vir:8654|NCBI_annot:gp12|genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Match_columns 629 No_of_seqs 24 out of 27 Neff 3.4 Searched_HMMs 1612 Date Sat Nov 30 13:35:19 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_12 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_12_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:8654 Length: 629 # 100.0 0E+00 0E+00 1868.7 54.0 629 1-629 1-629 (629) 2 protein:vir:99088 Length: 629 100.0 0E+00 0E+00 1867.6 54.0 629 1-629 1-629 (629) 3 protein:vir:97900 Length: 639 100.0 1E-321 0E+00 1779.5 52.0 628 1-629 1-639 (639) 4 protein:vir:107517 Length: 639 100.0 1E-321 0E+00 1779.5 52.0 628 1-629 1-639 (639) 5 protein:vir:106027 Length: 629 100.0 1E-313 6E-317 1736.6 52.9 619 1-629 1-629 (629) 6 protein:vir:102426 Length: 631 100.0 6E-311 4E-314 1721.1 51.6 620 1-629 1-631 (631) 7 protein:vir:106491 Length: 646 100.0 5E-276 3E-279 1529.7 48.4 589 1-629 1-625 (646) 8 protein:vir:7853 Length: 518 # 99.8 7.9E-19 4.9E-22 119.8 27.2 474 23-591 1-518 (518) 9 protein:vir:101648 Length: 518 99.8 1.6E-18 1E-21 118.1 27.9 474 23-591 1-518 (518) 10 protein:vir:101647 Length: 460 99.7 7.7E-19 4.8E-22 119.9 23.1 420 1-512 1-460 (460) 11 protein:vir:483 Length: 413 # 99.7 4.5E-18 2.8E-21 115.7 25.8 400 1-529 1-413 (413) 12 protein:vir:1326 Length: 457 # 99.7 3.3E-18 2.1E-21 116.4 24.4 429 1-520 1-457 (457) 13 protein:vir:1266 Length: 416 # 99.7 3.9E-17 2.4E-20 110.5 27.2 405 1-518 1-416 (416) 14 protein:vir:107605 Length: 432 99.7 7.9E-17 4.9E-20 108.9 28.6 413 1-519 1-432 (432) 15 protein:vir:102855 Length: 432 99.7 7.9E-17 4.9E-20 108.9 28.6 413 1-519 1-432 (432) 16 protein:vir:105002 Length: 432 99.7 7.9E-17 4.9E-20 108.9 28.6 413 1-519 1-432 (432) 17 protein:vir:102080 Length: 429 99.7 4.8E-17 2.9E-20 110.1 26.3 410 1-526 1-429 (429) 18 protein:vir:93610 Length: 454 99.7 2.1E-16 1.3E-19 106.6 29.8 439 5-544 1-454 (454) 19 protein:vir:5737 Length: 419 # 99.7 6.1E-17 3.8E-20 109.5 25.5 412 6-533 1-419 (419) 20 protein:vir:102727 Length: 945 99.7 2.9E-16 1.8E-19 105.8 29.1 518 1-629 27-605 (945) 21 protein:vir:3868 Length: 417 # 99.7 3.3E-17 2.1E-20 110.9 23.9 409 6-529 1-417 (417) 22 protein:vir:4337 Length: 434 # 99.7 1.1E-16 6.9E-20 108.1 25.5 422 1-524 1-434 (434) 23 protein:vir:81218 Length: 423 99.7 2E-16 1.2E-19 106.7 26.2 412 1-516 1-423 (423) 24 protein:vir:4454 Length: 414 # 99.7 9.1E-17 5.7E-20 108.5 24.4 405 1-529 1-414 (414) 25 protein:vir:6240 Length: 457 # 99.7 3.9E-16 2.4E-19 105.1 26.6 438 1-525 1-457 (457) 26 protein:vir:100150 Length: 437 99.6 2.2E-16 1.4E-19 106.4 24.6 423 1-525 1-437 (437) 27 protein:vir:8418 Length: 409 # 99.6 1.6E-15 9.7E-19 101.8 28.6 397 1-526 1-409 (409) 28 protein:vir:81152 Length: 411 99.6 3.3E-16 2E-19 105.5 24.5 395 1-505 1-411 (411) 29 protein:vir:9702 Length: 406 # 99.6 8.5E-16 5.3E-19 103.2 25.9 399 1-521 1-406 (406) 30 protein:vir:10362 Length: 432 99.6 7.2E-16 4.5E-19 103.6 25.5 407 1-509 1-432 (432) 31 protein:vir:80333 Length: 419 99.6 3.6E-16 2.2E-19 105.2 23.5 411 1-547 1-419 (419) 32 protein:vir:1380 Length: 422 # 99.6 1.2E-15 7.7E-19 102.3 26.1 405 1-513 1-422 (422) 33 protein:vir:95378 Length: 406 99.6 9.9E-16 6.1E-19 102.8 25.2 398 1-513 1-406 (406) 34 protein:vir:81072 Length: 432 99.6 8.1E-16 5E-19 103.3 24.0 408 3-509 1-432 (432) 35 protein:vir:4509 Length: 424 # 99.6 2.1E-15 1.3E-18 101.0 26.2 411 1-524 1-424 (424) 36 protein:vir:960 Length: 413 # 99.6 1E-15 6.3E-19 102.8 24.0 398 1-516 4-413 (413) 37 protein:vir:94666 Length: 723 99.6 2E-14 1.3E-17 95.6 30.7 517 8-629 1-580 (723) 38 protein:vir:1884 Length: 424 # 99.6 3.3E-15 2.1E-18 100.0 26.0 404 1-519 1-424 (424) 39 protein:vir:100882 Length: 383 99.6 2.6E-15 1.6E-18 100.5 24.3 373 1-504 1-383 (383) 40 protein:vir:100249 Length: 431 99.6 6E-15 3.7E-18 98.6 26.0 402 1-510 1-431 (431) 41 protein:vir:97060 Length: 432 99.6 5E-15 3.1E-18 99.0 25.1 401 15-509 1-432 (432) 42 protein:vir:104259 Length: 403 99.6 7.8E-15 4.8E-18 97.9 26.1 392 1-519 1-403 (403) 43 protein:vir:4194 Length: 540 # 99.6 3E-14 1.9E-17 94.7 28.8 482 1-592 1-540 (540) 44 protein:vir:189 Length: 424 # 99.6 4.3E-15 2.6E-18 99.4 24.0 401 1-508 1-424 (424) 45 protein:vir:105064 Length: 421 99.6 2.4E-14 1.5E-17 95.2 27.6 408 1-527 1-421 (421) 46 protein:vir:3153 Length: 467 # 99.6 4.9E-15 3E-18 99.1 23.6 406 46-532 1-467 (467) 47 protein:vir:8317 Length: 409 # 99.6 2.9E-15 1.8E-18 100.3 22.2 363 1-456 11-409 (409) 48 protein:vir:1431 Length: 419 # 99.5 2.5E-14 1.6E-17 95.2 26.6 408 1-536 1-419 (419) 49 protein:vir:3843 Length: 397 # 99.5 4E-14 2.5E-17 94.1 27.0 387 1-515 1-397 (397) 50 protein:vir:79772 Length: 648 99.5 8.3E-13 5.1E-16 86.8 33.6 531 1-629 1-613 (648) 51 protein:vir:2683 Length: 412 # 99.5 3.7E-14 2.3E-17 94.3 25.2 403 1-518 1-412 (412) 52 protein:vir:102118 Length: 409 99.5 6.6E-14 4.1E-17 92.9 25.2 393 1-513 1-409 (409) 53 protein:vir:93943 Length: 409 99.5 6.5E-14 4E-17 92.9 25.1 401 1-518 1-409 (409) 54 protein:vir:4156 Length: 542 # 99.5 8.8E-14 5.5E-17 92.1 25.8 477 1-592 1-542 (542) 55 protein:vir:100187 Length: 385 99.5 9.1E-14 5.6E-17 92.1 25.4 372 1-502 1-385 (385) 56 protein:vir:94426 Length: 409 99.5 1.2E-13 7.2E-17 91.5 25.9 399 1-518 1-409 (409) 57 protein:vir:4854 Length: 386 # 99.5 9E-14 5.6E-17 92.1 24.2 374 6-513 1-386 (386) 58 protein:vir:9359 Length: 348 # 99.5 1E-13 6.4E-17 91.8 24.5 336 75-519 1-348 (348) 59 protein:vir:63755 Length: 547 99.5 3E-13 1.9E-16 89.2 26.5 478 1-567 1-547 (547) 60 protein:vir:80644 Length: 551 99.5 2.1E-13 1.3E-16 90.0 25.3 473 1-567 5-551 (551) 61 protein:vir:100691 Length: 535 99.5 7.1E-13 4.4E-16 87.2 27.8 457 1-527 1-535 (535) 62 protein:vir:96579 Length: 576 99.5 1.6E-13 9.8E-17 90.8 24.1 484 1-573 27-576 (576) 63 protein:vir:80134 Length: 403 99.4 2.6E-13 1.6E-16 89.6 24.9 393 1-513 1-403 (403) 64 protein:vir:99312 Length: 563 99.4 1.8E-12 1.1E-15 85.0 28.3 462 1-561 55-563 (563) 65 protein:vir:95599 Length: 563 99.4 1.8E-12 1.1E-15 85.0 28.3 462 1-561 55-563 (563) 66 protein:vir:6210 Length: 394 # 99.4 7.2E-13 4.4E-16 87.2 25.3 391 1-518 1-394 (394) 67 protein:vir:80796 Length: 574 99.4 8.1E-12 5E-15 81.4 30.5 484 1-564 27-574 (574) 68 protein:vir:96980 Length: 409 99.4 1.3E-12 8.1E-16 85.7 24.8 399 1-518 1-409 (409) 69 protein:vir:78641 Length: 278 99.4 3.9E-13 2.4E-16 88.6 20.8 272 75-412 1-278 (278) 70 protein:vir:8100 Length: 466 # 99.3 1.3E-12 8.2E-16 85.7 22.5 422 6-520 1-466 (466) 71 protein:vir:4598 Length: 416 # 99.3 9.9E-12 6.2E-15 80.9 25.1 400 1-513 1-416 (416) 72 protein:vir:81095 Length: 416 99.3 9.9E-12 6.2E-15 80.9 25.1 400 1-513 1-416 (416) 73 protein:vir:4952 Length: 386 # 99.3 9.3E-12 5.8E-15 81.1 22.6 372 1-518 1-386 (386) 74 protein:vir:94002 Length: 378 99.2 7.4E-11 4.6E-14 76.1 26.0 369 1-521 1-378 (378) 75 protein:vir:101289 Length: 395 99.2 6.9E-11 4.3E-14 76.3 25.6 388 1-519 1-395 (395) 76 protein:vir:9507 Length: 395 # 99.2 6.9E-11 4.3E-14 76.3 25.6 388 1-519 1-395 (395) 77 protein:vir:100650 Length: 395 99.2 6.9E-11 4.3E-14 76.3 25.6 388 1-519 1-395 (395) 78 protein:vir:93867 Length: 378 99.2 1.2E-10 7.5E-14 74.9 26.1 372 1-521 1-378 (378) 79 protein:vir:79984 Length: 441 99.2 2.1E-10 1.3E-13 73.7 26.2 414 1-513 1-441 (441) 80 protein:vir:9408 Length: 441 # 99.2 2.1E-10 1.3E-13 73.7 26.2 414 1-513 1-441 (441) 81 protein:vir:1661 Length: 378 # 99.2 1.8E-10 1.1E-13 74.1 25.8 369 1-521 1-378 (378) 82 protein:vir:4995 Length: 384 # 99.2 3.7E-11 2.3E-14 77.8 21.7 369 6-456 1-384 (384) 83 protein:vir:95965 Length: 385 99.2 1.6E-10 1E-13 74.2 25.1 373 1-513 1-385 (385) 84 protein:vir:78310 Length: 376 99.2 7E-11 4.3E-14 76.3 23.0 360 1-507 1-376 (376) 85 protein:vir:98396 Length: 441 99.1 2.1E-10 1.3E-13 73.6 24.9 414 1-519 1-441 (441) 86 protein:vir:7407 Length: 392 # 99.1 1.2E-10 7.7E-14 74.9 23.3 384 1-514 1-392 (392) 87 protein:vir:99452 Length: 651 99.1 3.1E-10 1.9E-13 72.7 24.6 510 1-597 75-651 (651) 88 protein:vir:4089 Length: 395 # 99.1 2.9E-10 1.8E-13 72.9 24.1 379 1-520 1-395 (395) 89 protein:vir:4828 Length: 382 # 99.0 1.6E-09 9.6E-13 68.9 25.7 372 1-513 1-382 (382) 90 protein:vir:94869 Length: 378 99.0 1E-09 6.5E-13 69.8 24.6 374 1-513 1-378 (378) 91 protein:vir:1023 Length: 392 # 99.0 1.3E-09 8.3E-13 69.2 24.2 382 1-514 1-392 (392) 92 protein:vir:3989 Length: 392 # 99.0 1.3E-09 8.3E-13 69.2 24.2 382 1-514 1-392 (392) 93 protein:vir:9641 Length: 395 # 99.0 2E-09 1.3E-12 68.2 24.1 383 1-507 1-395 (395) 94 protein:vir:858 Length: 378 # 99.0 2.9E-09 1.8E-12 67.4 24.2 375 1-513 1-378 (378) 95 protein:vir:98643 Length: 395 98.9 9E-09 5.6E-12 64.7 25.7 379 1-516 1-395 (395) 96 protein:vir:1082 Length: 359 # 98.9 2.5E-09 1.6E-12 67.7 20.6 330 35-447 1-359 (359) 97 protein:vir:6382 Length: 553 # 98.7 1.1E-07 7E-11 58.7 27.5 462 1-526 1-553 (553) 98 protein:vir:389 Length: 530 # 98.6 2.9E-07 1.8E-10 56.4 26.1 454 4-520 1-530 (530) 99 protein:vir:78749 Length: 337 98.5 1.6E-08 1E-11 63.3 15.0 327 1-413 1-337 (337) 100 protein:vir:267 Length: 348 # 98.5 3.8E-09 2.4E-12 66.7 11.6 335 1-431 1-348 (348) 101 protein:vir:1150 Length: 350 # 98.4 4E-08 2.5E-11 61.2 15.5 338 1-412 1-350 (350) 102 protein:vir:3780 Length: 345 # 98.4 7.2E-09 4.5E-12 65.2 11.3 317 9-414 1-345 (345) 103 protein:vir:79150 Length: 368 98.4 3.1E-08 1.9E-11 61.7 14.2 353 1-433 1-368 (368) 104 protein:vir:3743 Length: 345 # 98.4 5.2E-08 3.2E-11 60.5 15.2 321 9-414 1-345 (345) 105 protein:vir:2013 Length: 344 # 98.4 5.7E-08 3.5E-11 60.3 15.1 323 1-417 1-344 (344) 106 protein:vir:3420 Length: 533 # 98.4 1.1E-06 6.8E-10 53.3 26.3 450 1-528 1-533 (533) 107 protein:vir:6058 Length: 344 # 98.3 4.6E-08 2.9E-11 60.8 13.3 320 1-418 1-344 (344) 108 protein:vir:103971 Length: 376 98.3 9.2E-08 5.7E-11 59.2 14.3 344 1-419 1-376 (376) 109 protein:vir:10321 Length: 495 98.3 2E-06 1.3E-09 51.8 26.2 439 1-520 1-495 (495) 110 protein:vir:98567 Length: 340 98.2 2.2E-07 1.4E-10 57.1 14.8 326 1-417 1-340 (340) 111 protein:vir:98853 Length: 219 98.1 3.7E-07 2.3E-10 55.8 14.4 215 141-417 1-219 (219) 112 protein:vir:5691 Length: 344 # 98.0 3.5E-06 2.2E-09 50.5 18.0 323 1-417 1-344 (344) 113 protein:vir:95542 Length: 548 98.0 8.6E-06 5.3E-09 48.4 30.5 464 1-532 1-548 (548) 114 protein:vir:78191 Length: 351 98.0 2.8E-06 1.7E-09 51.1 16.3 330 1-419 1-351 (351) 115 protein:vir:100328 Length: 346 97.9 2.8E-06 1.8E-09 51.0 15.8 323 1-417 1-346 (346) 116 protein:vir:96738 Length: 505 97.9 1.4E-05 8.5E-09 47.2 29.3 431 1-524 1-505 (505) 117 protein:vir:79207 Length: 351 97.7 2.3E-06 1.4E-09 51.5 12.5 331 1-419 1-351 (351) 118 protein:vir:79538 Length: 502 97.4 7.7E-05 4.8E-08 43.1 30.0 438 1-523 8-502 (502) 119 protein:vir:94049 Length: 532 93.7 0.0068 4.2E-06 32.5 21.8 447 1-530 1-532 (532) 120 protein:vir:107742 Length: 537 91.7 0.015 9.2E-06 30.6 24.8 430 1-531 25-537 (537) 121 protein:vir:4698 Length: 251 # 48.5 0.67 0.00041 21.5 12.4 242 1-309 1-251 (251) No 1 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=100.00 E-value=0 Score=1868.67 Aligned_cols=629 Identities=100% Similarity=1.432 Sum_probs=627.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) ||+|+|||||||||+||++|+|+|||||||+++|++.|||++|++.+++||+|||+|||+|||||||||||+|||||||| T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) |+|+||||||+|||+++|++++++|+++||+.|+||++||+|||||+++|||||||+|||+++|+++++||+++++.+|| T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:86 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCc Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnG 240 (629) +||++||+++++|+.|+||+|++|||++++|+|||||||||||++|||||||+||++||||+||||+|+|++|||||||| T Consensus 161 ~vt~~ei~~~~~~~~i~lP~g~~~e~~~~~d~l~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~gnG 240 (629) T protein:vir:86 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) T ss_pred eechHHhhhccCceeeEcCCCCcceeeCCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeC Q lcl|Aclame:pro 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) Q Consensus 241 vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~ 320 (629) |||||+|||||++++|+++|+||+++|+..++|+++|||+||||||+|||+||+|+||+||||+++|+|||++||||||+ T Consensus 241 vlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hlkf~ 320 (629) T protein:vir:86 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) T ss_pred eeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEEeec Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCh Q lcl|Aclame:pro 321 NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDP 400 (629) Q Consensus 321 ~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~ 400 (629) |||||++||||+|||+|||||+|||||+|||||+|+||||||||+||+||+||+|+|++||+|||++|||++|++||||| T Consensus 321 ~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~eGiDp 400 (629) T protein:vir:86 321 NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDP 400 (629) T ss_pred CchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHHHhCCCH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhccc Q lcl|Aclame:pro 401 NAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPE 480 (629) Q Consensus 401 ~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~ 480 (629) ++||||||+|+|++|||+++||+++||+|+||.||||||+||++|+||||||+|||+|||+|+|+++|+|||+|+||++. T Consensus 401 ~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li~~~a~l~~~ 480 (629) T protein:vir:86 401 NAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPE 480 (629) T ss_pred HHhEeeecCcccccCCCCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchhhhhhhhhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHH Q lcl|Aclame:pro 481 LADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPY 560 (629) Q Consensus 481 ~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~a 560 (629) ++.++||+|.++++|+++++.++|.+++++++||+||+++++++.+++++++++.++|++|++|||||||||+|+|++++ T Consensus 481 ~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~aa~~~~~~a~V~llv~RALelAGkR~r~r~~~a 560 (629) T protein:vir:86 481 LADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPY 560 (629) T ss_pred hcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHHHHHhcCCcCCChhhHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HhcccchHhhhhhcCCCChhHHHHHHhhhhhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccccC Q lcl|Aclame:pro 561 ELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYGELTKTIDGEVS 629 (629) Q Consensus 561 r~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~~ld~~~~a~lG~D~~~lr~~v~~~v~~~lt~~vd~~v~ 629 (629) |+|+||+|+||++|+||++++++|||+|||++||++++++||+|++|||++|++||+++||++|||||| T Consensus 561 ~~r~v~~he~h~~l~Pv~~~~v~rli~gwd~~ld~~~~~~Lg~d~~~lr~~v~a~v~~~lt~~v~~ev~ 629 (629) T protein:vir:86 561 ELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYGELTKTIDGEVS 629 (629) T ss_pred HHhccChhhcceecCCCChHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcccccccC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=100.00 E-value=0 Score=1867.59 Aligned_cols=629 Identities=100% Similarity=1.431 Sum_probs=627.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) ||+|+|||||||||+||++|+|+|||||||+++|++.|||++|++.+++||+|||+|||+|||||||||||+|||||||| T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) |+|+||||||+|||+++|++++++|+++||+.|+||++||+|||||+++|||||||+|||+++|+++++||+++++.+|| T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:99 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCc Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnG 240 (629) +||++||+++++|+.|+||+|++|||++++|+|||||||||||++|||||||+||++||||+||||+|+|++|||||||| T Consensus 161 ~vt~~ei~~~~~~~~i~lP~g~~~e~~~~~d~l~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~gnG 240 (629) T protein:vir:99 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) T ss_pred eechHHhhhccCceeEEcCCCCccceeCCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHhhCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeC Q lcl|Aclame:pro 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) Q Consensus 241 vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~ 320 (629) |||||+|||||++++|+++|+||+++|+..++|+++|||+||||||+|||+||+|+||+||||+++|+|||++||||||+ T Consensus 241 vlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hlkf~ 320 (629) T protein:vir:99 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) T ss_pred eeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEEeec Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCh Q lcl|Aclame:pro 321 NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDP 400 (629) Q Consensus 321 ~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~ 400 (629) |||||++||||+|||+|||||+|||||+|||||+|+||||||||+||+||+||+|+|++||+|||++|||++|++||||| T Consensus 321 ~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~eGiDp 400 (629) T protein:vir:99 321 NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDP 400 (629) T ss_pred CchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHHHhCCCH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhccc Q lcl|Aclame:pro 401 NAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPE 480 (629) Q Consensus 401 ~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~ 480 (629) ++||||||+|+|++|||+++||+++||+|+||.||||||+||++|+||||||+|||+|||+|+|+++|+|||+|+||++. T Consensus 401 ~kYvvW~DaS~Lt~dPd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li~~~a~l~~~ 480 (629) T protein:vir:99 401 NAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPE 480 (629) T ss_pred HHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchhhhhhhhhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHH Q lcl|Aclame:pro 481 LADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPY 560 (629) Q Consensus 481 ~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~a 560 (629) ++.++||+|.++++|+++++.++|.+++++++||+||+++++++.+++++++++.++|++|++|||||||||+|+|++++ T Consensus 481 ~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~aa~~~~~~a~V~llv~RALelAGkR~r~r~~~a 560 (629) T protein:vir:99 481 LADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPY 560 (629) T ss_pred hcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCCCCCCcHHHHHHHHHHHHHHhcCCcCCChhhHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HhcccchHhhhhhcCCCChhHHHHHHhhhhhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccccC Q lcl|Aclame:pro 561 ELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYGELTKTIDGEVS 629 (629) Q Consensus 561 r~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~~ld~~~~a~lG~D~~~lr~~v~~~v~~~lt~~vd~~v~ 629 (629) |+|+||+|+||+||+||+++++.|||+|||++||++++++||+|++|||++|++||+++||++|||||| T Consensus 561 r~r~v~~he~h~~l~Pv~~~~i~rli~gwd~~ld~~~~~~Lg~d~~~lr~~v~a~v~~~lt~~~~~ev~ 629 (629) T protein:vir:99 561 ELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYGELTKTIDGEVS 629 (629) T ss_pred HHhcCchhhceeecCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhhhhccccC Confidence 999999999999999999999999999999999999999999999999999999999999999999999 No 3 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=100.00 E-value=1.4e-321 Score=1779.54 Aligned_cols=628 Identities=48% Similarity=0.820 Sum_probs=615.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) ||||+|||||||||+||.+|||+||||||++++|++.|||+++++.+++||+|||+|||+|||||||||||+|||||||| T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeecCCCCCCCCCCC-CCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCc-ccccCcccchh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSID-EDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKS-RLDSNGNPVPE 158 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~-~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~-~~d~~~~~~~e 158 (629) |+|+||||||+|||+|. |+++.+++++++|+.|+||++||+|||||+++|||||||+|||+|+|++. +.+.++.+..+ T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:97 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 99999999999999997 88999999999999999999999999999999999999999999999764 66677888999 Q ss_pred hheecHHHhccC-CCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhh Q lcl|Aclame:pro 159 WLALTPEEVRAS-EKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) Q Consensus 159 W~~vt~~eI~~~-~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~ 237 (629) ||+||++||+.+ ++++.|+||+|++|+|++++|+|||||||||||++|||||||+||++||||+||||+|+|++||||| T Consensus 161 W~vvs~~Ei~~~~~~~~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~ 240 (639) T protein:vir:97 161 WYAVTREEIKSKAGETAEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRVM 240 (639) T ss_pred eeeeeHHHhcccCCCeeEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHh Confidence 999999999755 5668899999999999999999999999999999999999999999999999999999999999999 Q ss_pred hCceeeecCCccCCcccCCCcCCC---CCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 238 GNGVVFVPHEMSLPSMNAPVASNK---PGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 238 gnGvlfvPqe~slP~~~ap~~~~~---pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) ||||||||+|||||+.++|+++|+ ||+++|+..|+|++++||+||||||+|||+||+|+||+||||+++|+|||+|| T Consensus 241 gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~i 320 (639) T protein:vir:97 241 NNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEKV 320 (639) T ss_pred hCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcCe Confidence 999999999999999999999998 99999999999999999999999999999999999999999999999999999 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) |||+|+||||+++||||||||+|||||+|||||+|||| +|+||||||||+||+||+||+|+|++||+|||++|||++|+ T Consensus 321 khl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl-~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lrp~Le 399 (639) T protein:vir:97 321 QHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGM-SKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILTPLLA 399 (639) T ss_pred eeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeec-ccccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHH Confidence 99999999999999999999999999999999999999 59999999999999999999999999999999999999999 Q ss_pred hcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhh Q lcl|Aclame:pro 395 REGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTL 474 (629) Q Consensus 395 ~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l 474 (629) +|||||++||||||+|+|++|||+++||+++||+|+||.||||||+||+|+++|||+|+|||++||+++|+++|.||+++ T Consensus 400 ~eGvDp~kYvvW~DaS~Lt~dPd~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~ 479 (639) T protein:vir:97 400 REGIDPTKYILWYDASGLTSDPDLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELIAMY 479 (639) T ss_pred HhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchhhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhc-ccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 475 AVLI-PELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRS 553 (629) Q Consensus 475 ~pll-~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~ 553 (629) +|++ +.++.++||+|+++.++++++.+++++++++++.+||||+++.+++.+.++..+..++++++||+|||||||||| T Consensus 480 apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~~~~a~~~~~~a~~v~a~~llv~RALelAGkRr 559 (639) T protein:vir:97 480 APLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERSTEEAASLNDRAAYLVAERLLVNRALDLAGKRR 559 (639) T ss_pred hhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccCCccccCcCchhHHHHHHHHHHHHHHHhhcccc Confidence 9999 899999999999999999999999999999999999999999988888888888899999999999999999996 Q ss_pred ---CChhhHHHhcccchHhhhhhcCCCChhHHHHHHhhhhhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHhh-hhccccC Q lcl|Aclame:pro 554 ---RTRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYGELTK-TIDGEVS 629 (629) Q Consensus 554 ---r~r~~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~~ld~~~~a~lG~D~~~lr~~v~~~v~~~lt~-~vd~~v~ 629 (629) |+|++++|+|+||+|+||++|+||++++++|||+|||++||++++++||+|++|||++|++||+++||+ +|||||| T Consensus 560 ~~~~~r~~~a~~r~vp~he~H~~l~Pv~~~~~~rli~gwd~~ld~~~~a~lg~D~~~lr~~v~~~v~~~lt~~~i~~ev~ 639 (639) T protein:vir:97 560 FKVNDAALKTKLRDVPAHEYHRVLPPVRSSEIPRLIAGWDTALEDEVVASLGLDNEKLRNAVLATVRRQLTQPLIEGEVV 639 (639) T ss_pred cCCCChhhHHHhhcCChhHceeecCCCChHHHHHHHHHHHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhccccC Confidence 899999999999999999999999999999999999999999999999999999999999999999999 6999999 No 4 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=100.00 E-value=1.4e-321 Score=1779.54 Aligned_cols=628 Identities=48% Similarity=0.820 Sum_probs=615.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) ||||+|||||||||+||.+|||+||||||++++|++.|||+++++.+++||+|||+|||+|||||||||||+|||||||| T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeecCCCCCCCCCCC-CCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCc-ccccCcccchh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSID-EDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKS-RLDSNGNPVPE 158 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~-~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~-~~d~~~~~~~e 158 (629) |+|+||||||+|||+|. |+++.+++++++|+.|+||++||+|||||+++|||||||+|||+|+|++. +.+.++.+..+ T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:10 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 99999999999999997 88999999999999999999999999999999999999999999999764 66677888999 Q ss_pred hheecHHHhccC-CCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhh Q lcl|Aclame:pro 159 WLALTPEEVRAS-EKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) Q Consensus 159 W~~vt~~eI~~~-~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~ 237 (629) ||+||++||+.+ ++++.|+||+|++|+|++++|+|||||||||||++|||||||+||++||||+||||+|+|++||||| T Consensus 161 W~vvs~~Ei~~~~~~~~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSRl~ 240 (639) T protein:vir:10 161 WYAVTREEIKSKAGETAEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSRVM 240 (639) T ss_pred eeeeeHHHhcccCCCeeEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHh Confidence 999999999755 5668899999999999999999999999999999999999999999999999999999999999999 Q ss_pred hCceeeecCCccCCcccCCCcCCC---CCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 238 GNGVVFVPHEMSLPSMNAPVASNK---PGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 238 gnGvlfvPqe~slP~~~ap~~~~~---pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) ||||||||+|||||+.++|+++|+ ||+++|+..|+|++++||+||||||+|||+||+|+||+||||+++|+|||+|| T Consensus 241 gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~~i 320 (639) T protein:vir:10 241 NNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLEKV 320 (639) T ss_pred hCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhcCe Confidence 999999999999999999999998 99999999999999999999999999999999999999999999999999999 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) |||+|+||||+++||||||||+|||||+|||||+|||| +|+||||||||+||+||+||+|+|++||+|||++|||++|+ T Consensus 321 khl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl-~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lrp~Le 399 (639) T protein:vir:10 321 QHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGM-SKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILTPLLA 399 (639) T ss_pred eeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeec-ccccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHH Confidence 99999999999999999999999999999999999999 59999999999999999999999999999999999999999 Q ss_pred hcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhh Q lcl|Aclame:pro 395 REGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTL 474 (629) Q Consensus 395 ~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l 474 (629) +|||||++||||||+|+|++|||+++||+++||+|+||.||||||+||+|+++|||+|+|||++||+++|+++|.||+++ T Consensus 400 ~eGvDp~kYvvW~DaS~Lt~dPd~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li~~~ 479 (639) T protein:vir:10 400 REGIDPTKYILWYDASGLTSDPDLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELIAMY 479 (639) T ss_pred HhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchhhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhc-ccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 475 AVLI-PELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRS 553 (629) Q Consensus 475 ~pll-~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~ 553 (629) +|++ +.++.++||+|+++.++++++.+++++++++++.+||||+++.+++.+.++..+..++++++||+|||||||||| T Consensus 480 apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~~~~a~~~~~~a~~v~a~~llv~RALelAGkRr 559 (639) T protein:vir:10 480 APLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERSTEEAASLNDRAAYLVAERLLVNRALDLAGKRR 559 (639) T ss_pred hhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccCCccccCcCchhHHHHHHHHHHHHHHHhhcccc Confidence 9999 899999999999999999999999999999999999999999988888888888899999999999999999996 Q ss_pred ---CChhhHHHhcccchHhhhhhcCCCChhHHHHHHhhhhhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHhh-hhccccC Q lcl|Aclame:pro 554 ---RTRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYGELTK-TIDGEVS 629 (629) Q Consensus 554 ---r~r~~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~~ld~~~~a~lG~D~~~lr~~v~~~v~~~lt~-~vd~~v~ 629 (629) |+|++++|+|+||+|+||++|+||++++++|||+|||++||++++++||+|++|||++|++||+++||+ +|||||| T Consensus 560 ~~~~~r~~~a~~r~vp~he~H~~l~Pv~~~~~~rli~gwd~~ld~~~~a~lg~D~~~lr~~v~~~v~~~lt~~~i~~ev~ 639 (639) T protein:vir:10 560 FKVNDAALKTKLRDVPAHEYHRVLPPVRSSEIPRLIAGWDTALEDEVVASLGLDNEKLRNAVLATVRRQLTQPLIEGEVV 639 (639) T ss_pred cCCCChhhHHHhhcCChhHceeecCCCChHHHHHHHHHHHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhccccC Confidence 899999999999999999999999999999999999999999999999999999999999999999999 6999999 No 5 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=100.00 E-value=1e-313 Score=1736.55 Aligned_cols=619 Identities=55% Similarity=0.871 Sum_probs=593.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCC-cccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSS-TRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~-~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) ||+|+|||+||||++|. ||+|||||||+ +|++.|||+.+|. .+++||+|||+|||+|||||||||||+||||||| T Consensus 1 ma~~~lrv~rrpk~~p~---~r~l~aasqp~-~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~r 76 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPA---RRSLTAASQPM-EPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVE 76 (629) T ss_pred CCccceeEEecCCCccc---eeeeccccCCC-CcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeee Confidence 99999999999999955 79999999997 6999999995554 5889999999999999999999999999999999 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) ||+||||||||+|||+++||+|.|+++++||+.|+||++||+|||||+++|||||||+||||+.+..+.. ++..+++| T Consensus 77 L~as~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~p--d~~~r~~W 154 (629) T protein:vir:10 77 LIASELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNP--DGSVRHNW 154 (629) T ss_pred EEEeeecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCC--Ccccccce Confidence 9999999999999999999999999999999999999999999999999999999999999998877644 44556799 Q ss_pred heecHHHhccCC-CeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhh Q lcl|Aclame:pro 160 LALTPEEVRASE-KKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIG 238 (629) Q Consensus 160 ~~vt~~eI~~~~-~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~g 238 (629) |+||++||+++| +|+.|+||+|++|+|++++|+|||||||||||++|||||||+||++||||+||||+|+|++|||||| T Consensus 155 ~vVt~~Ei~~kg~g~~~i~lpdg~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakSRL~g 234 (629) T protein:vir:10 155 YVVTNDEVKNKGAGKTDIELPDGTIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKSRLIG 234 (629) T ss_pred eeecHHHhccccCceeEEEcCCCceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHhHHhh Confidence 999999999886 7799999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEE Q lcl|Aclame:pro 239 NGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLK 318 (629) Q Consensus 239 nGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~ 318 (629) |||||||+|||||++++|++.++||+++|...|.+++++||+||||||+|||+||+|+||+||||+++|+|||+|||||+ T Consensus 235 nGvlflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~ikhLk 314 (629) T protein:vir:10 235 NGVVFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQKIFHLK 314 (629) T ss_pred CceeEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcCeeeee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 319 FDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGI 398 (629) Q Consensus 319 f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~ 398 (629) |+|||||++||||||||+|||||+|||||+|||||+|+||||||||+||+||+||+|+|++||+|||++|||++|++||| T Consensus 315 f~~eite~~iktR~daI~RlAmglDispErLLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~Ait~~~Lrp~L~~eGi 394 (629) T protein:vir:10 315 IGNEITEVEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVQLHIKPVMEVLCAAIYREVLVATLRAEGI 394 (629) T ss_pred ecCchhHHHHhhHHHHHHHHHhccCCChhheeeccCCccceeeEEecccceeeecchHHHHHHHHHHhHHHHHHHHHhCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhc Q lcl|Aclame:pro 399 DPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLI 478 (629) Q Consensus 399 d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll 478 (629) ||++||||||+|+|++|||+++||+++||+|+||.||||||+||+++++||+||.|||++||+++|.++|.||++++||+ T Consensus 395 Dp~~Yvvw~DaS~Lt~dPd~~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P~Li~~~apll 474 (629) T protein:vir:10 395 DPDRYVLWYDASGLTVDPDKTDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADPSLIKVLAPLL 474 (629) T ss_pred CHHHhEeeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCCchhhhhhhhc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred -ccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhccc---C Q lcl|Aclame:pro 479 -PELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRS---R 554 (629) Q Consensus 479 -~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~---r 554 (629) +.++.++||+|+++.+|++++++++|+. +.++||+||+|.+ .....+..++...+|++|++|||||||||| | T Consensus 475 ~~~l~~i~~P~p~~a~~~~~~~~~~~E~~--~~~~e~~~e~dA~--~a~~~~~~aa~~~A~rllv~RALelAGkRl~~~r 550 (629) T protein:vir:10 475 TDELAEIDWPEPPAALPPGEDDQADEEQD--TTGSEPSTEDDAE--AAARISSVADMVLAERLLTVRALGLAGKRRVNTN 550 (629) T ss_pred CCccccccccCCCCcCCCCCcccCccccC--CCCCCcCCCcchh--hcccCCchhhHHHHHHHHHHHHHHHccccccCCC Confidence 7889999999999999999988777664 4478999998863 445555566788899999999999999998 7 Q ss_pred ChhhHHHhcccchHhhhhhcCCCChhHHHHHHhhhhhhhhHHHHHHhCCCHHH---HHHHHHHHHHHHHhh-hhccccC Q lcl|Aclame:pro 555 TRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPG---IRAAVKRAVYGELTK-TIDGEVS 629 (629) Q Consensus 555 ~r~~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~~ld~~~~a~lG~D~~~---lr~~v~~~v~~~lt~-~vd~~v~ 629 (629) +|+.++|++++|+|+||++|+||+++|++|||+|||++|+++++++||+|++| |+++|++.|+++||+ +|||||| T Consensus 551 dR~~~ar~~~vp~he~h~~l~Pv~~~~v~rli~gwd~~l~~~~~a~lg~D~~~~~~~~sav~~~v~~~lt~~~~~~ev~ 629 (629) T protein:vir:10 551 DRAQKARLAGIAPHDYHRVMGPVADADIPRLIAGWDEGLEEEALALLGVDSRRTEALRSAVRAQIRRELTMPVVDAEVC 629 (629) T ss_pred chhhHHHhhcCChhhceeecCCCChhHHHHHHHhhhhHHHHHHHHHhCCChhhhHHHHHHHHHHHHHHhhhhhhccccC Confidence 88899999999999999999999999999999999999999999999999975 777899999999999 7999999 No 6 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=100.00 E-value=6.5e-311 Score=1721.15 Aligned_cols=620 Identities=57% Similarity=0.919 Sum_probs=591.7 Q ss_pred CCC-CcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAP-TSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~-t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) ||| |+|||||||||++|++| |+|||||||+++|++.|||+++.+.+++||+|||+|||+|||||||||||+||||||| T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~-r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~r 79 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPS-RALTAASQPLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCR 79 (631) T ss_pred CCcccceeeeecCCCCCccch-hhhhhhhccccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceee Confidence 765 59999999999999886 6999999999999999999988899999999999999999999999999999999999 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCc----ccccCccc Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKS----RLDSNGNP 155 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~----~~d~~~~~ 155 (629) ||+|+||||||+|||+|+|++++|+++++||+.|+||++||+|||||+++|||||||+|||+|+|++. +.|+++++ T Consensus 80 L~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~ 159 (631) T protein:vir:10 80 LVASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRT 159 (631) T ss_pred eEeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999874 66788889 Q ss_pred chhhheecHHHhccC--CCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 156 VPEWLALTPEEVRAS--EKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) Q Consensus 156 ~~eW~~vt~~eI~~~--~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~ 233 (629) +.+||+||++||+++ |+++.|+||+|++|+|++++|+|||||||||||++|||||||+||++||||+||||+|+|++| T Consensus 160 ~~~W~~vt~~ei~~~~~g~g~~v~lp~g~~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaak 239 (631) T protein:vir:10 160 RQEWYAVSKEEIKKSNKGSGTNIVLPTGEEHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTIANASK 239 (631) T ss_pred ccceeeccHHHHhcccCcccceeecCCCCccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHH Confidence 999999999999877 556999999999999999999999999999999999999999999999999999999999999 Q ss_pred hHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcC Q lcl|Aclame:pro 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) Q Consensus 234 SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ 313 (629) ||||||||||||+|||||++++|+ ++.+|+++++..|.|+++||++||||||+|||+||+|+||+||||+++|+|||++ T Consensus 240 SRl~gnGvlflP~els~P~~~~~~-~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E~i~~ 318 (631) T protein:vir:10 240 SRLIGNGVLFVPHEMSLPAAQGPV-SEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGEQIKD 318 (631) T ss_pred HHHhhCceeEeccccccCCCCCCC-CCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcC Confidence 999999999999999999999998 7779999999999999999999999999999999999999999999999999999 Q ss_pred ceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 VTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) Q Consensus 314 ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~L 393 (629) ||||||+||||+++||||+|||+|||||+|||||+|||||+|+||||||||+||+||+||+|+|++||+|||++|||++| T Consensus 319 i~hlkf~~ei~e~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P~l~lic~AlT~q~Lrp~L 398 (631) T protein:vir:10 319 VKHIRFDNEITEVAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAPVMEIFCQALTDQILRVTL 398 (631) T ss_pred eeEEeecCchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhh Q lcl|Aclame:pro 394 MREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPT 473 (629) Q Consensus 394 e~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~ 473 (629) ++|||||++||||||+|+|++|||+++||+++||+|+||.||||||+||++|+||||+|+|||++||+++|.+||+|||+ T Consensus 399 e~eGvDp~kYvvW~DaS~Lt~dPdr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~~av~~dpaLip~ 478 (631) T protein:vir:10 399 AREGIDPSKYVVWYDPSQLTIDPDKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQDAVSKDPTLIPM 478 (631) T ss_pred HHhCCCHHHhEeeecCcccccCCCCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHHHHhhcccCcchh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhc-ccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 474 LAVLI-PELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKR 552 (629) Q Consensus 474 l~pll-~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR 552 (629) |+||+ ++++.+.||+|++..++++++.++ +.+.++.+++|||+++.+. +.++++ ...+|++||+||||||||| T Consensus 479 lApl~~~~~~~v~~P~~~a~~~~g~ed~~~-~~~~~~g~~epdt~d~~p~--~~~a~~---~~~iv~llv~RALelAGkR 552 (631) T protein:vir:10 479 LAPLIAGVLKQIEFPQQQAIDSGGNEDTSD-ADDLDDGEQEPDTEDDDDG--TQKAGL---ETGIVDLMVDRALELVGKR 552 (631) T ss_pred hHHHHHHHhhhccCCCCCCCCCCCCCcccc-ccccccCCCCCCCCCCCCc--cccccc---hHHHHHHHHHHHHHhhcch Confidence 99999 679999999999999999985444 4478888999999988643 334444 4578999999999999999 Q ss_pred c--CChhhHHHhcccchHhhhhhcCCCChhHHHHHHhhhhhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHhhh-hccccC Q lcl|Aclame:pro 553 S--RTRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYGELTKT-IDGEVS 629 (629) Q Consensus 553 ~--r~r~~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~~ld~~~~a~lG~D~~~lr~~v~~~v~~~lt~~-vd~~v~ 629 (629) | |+|..++|+++|+.|+||++|+||+++|++|||+|||++||++++++||+|++|||++|++||+++||+. || -|. T Consensus 553 l~~r~r~~~ar~~~v~~he~H~~~~Pv~~~ev~rli~gwd~~ld~~~~~~Lg~d~~~lr~~v~a~v~~~lt~~~~~-~~~ 631 (631) T protein:vir:10 553 RRGRDRETLARLSGVRERDYHRYMDPVPESEVDRLMSGWDSALDDKILLRLGLDPGTIRSAVRRKVMAELTRPVID-VVA 631 (631) T ss_pred hcCCcccchhHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-hcC Confidence 7 5577899999999999999999999999999999999999999999999999999999999999999995 44 333 No 7 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=100.00 E-value=5.4e-276 Score=1529.71 Aligned_cols=589 Identities=26% Similarity=0.435 Sum_probs=538.7 Q ss_pred CCCCcceeEEcCCCCCCCc------ccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVST------RQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~------r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) || .-||||+||+| |||+||||||++..+.+.|||+++++ +++||+|||+|||+|||||||||||+|| T Consensus 1 ~~------~~rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~-~~~WQ~eAW~~~d~vpELry~vgW~~~a 73 (646) T protein:vir:10 1 MA------LLKPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFG-NKDWQTEGWRLYDIIPEHHFLAGRIGDS 73 (646) T ss_pred Cc------ccCCCCCCCCcccccccchhhhhhccccccCCCcceeecCCCc-chhhhHHHHHHHhhhhhHhhHhhhhhhh Confidence 55 46899999974 68999999999999999999965555 5589999999999999999999999999 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) |||||||+|||| |||.|||.++++ ++++||..|+||.+||+|||||+++|||||||+|||+..-...+.+. T Consensus 74 ~SR~rL~aseid-dtG~~tg~v~~~-----~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~--- 144 (646) T protein:vir:10 74 VAQARLYVTEVD-DTGEETGEVQDE-----RIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAA--- 144 (646) T ss_pred hceeeeeeeeec-CCCCCcCccchH-----HHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCC--- Confidence 999999999999 999999999994 99999999999999999999999999999999999974444443333 Q ss_pred cchhhheecHHHhccCCCeeEEECCC---CCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 155 PVPEWLALTPEEVRASEKKTIIELPT---GDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 155 ~~~eW~~vt~~eI~~~~~~~~i~lP~---g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) ..+||+||.+||+++++++.|++|+ |++|+|++++|+|||||||||||++|||||||+||++||||+||||+|+|+ T Consensus 145 -~~~W~vvt~~Ev~~tg~~~~i~~p~~~~g~~~v~~~~~d~lvRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aa 223 (646) T protein:vir:10 145 -EGSWFVVTGSAISRTGDEIAVRRPQQRGGSKLVLVDGQDILIRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAE 223 (646) T ss_pred -ccceeeecHHHhccCCCeeeeecCccCCCCCcceecCCceEEEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHH Confidence 4459999999999999999999999 999999999999999999999999999999999999999999999999999 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHh Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i 311 (629) +|||||||||||||+|||||..+++ .+.+++||+||||||+|||+||+|+||+||||+++|+|+| T Consensus 224 akSRL~GnGvLfvP~e~s~p~~~~~---------------~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i 288 (646) T protein:vir:10 224 LDSRLTGAGIMFLPEGVDFPRGEED---------------PAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMM 288 (646) T ss_pred HHHHHhcCceeeeccccccCCCCCC---------------CcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHH Confidence 9999999999999999999995332 2347799999999999999999999999999999999955 Q ss_pred ---cCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 312 ---KNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQV 388 (629) Q Consensus 312 ---~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~ 388 (629) ++||||+|+||||+++||||+|||+|||||+|||||+||||| |+||||||||+||+|| ||+|+|++||+|||++| T Consensus 289 ~~~~~ik~l~f~~eite~aiktR~daI~RlA~glDIppE~LLGlg-d~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~ 366 (646) T protein:vir:10 289 EHLDKIKPLTFWSELSAEITPMKDKAIARLASSAEIPGEVLTGIG-DANHWTAWLISDEGIR-WIRGYLGLIADALTRGF 366 (646) T ss_pred hhhhcceeeccCchhhHHHhhhHHHHHHHHHhccCCchhheeecc-ccceeeeeeeccccch-hhhhHHHHHHHHHHhhH Confidence 588888899999999999999999999999999999999998 9999999999999999 99999999999999999 Q ss_pred HHHHHHhcCC-ChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 389 LRTVLMREGI-DPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQD 467 (629) Q Consensus 389 lr~~Le~eG~-d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~ 467 (629) ||++|++||| ||++||||||+|+|++|||+++||+++||+|+||.|||||++||+++++| ||.|+|+||++++|++| T Consensus 367 Lrp~Le~eGi~dp~kyvvW~DaS~Lt~~pd~~deA~qa~drGAIt~eAlrk~~Gf~~dd~p--t~~E~~~~~~~~~v~~~ 444 (646) T protein:vir:10 367 LRRALESMGVTNPERYAFAFDTSTLASKPNRLDEAIQLHERNLIKDEEVVKAGAFSVDQMP--TVQERAVQILLGLVKTQ 444 (646) T ss_pred HHHHHHHcCCCChhHeEEeecCcccccCCCCcHHHHHHHHcCCccHHHHHHHhcccccccC--ChHHHHHHHHHHHhcCC Confidence 9999999999 99999999999999999999999999999999999999999999999999 99999999999999999 Q ss_pred cchhhhhhhhc-ccccCccC---CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCC------------ Q lcl|Aclame:pro 468 PNLLPTLAVLI-PELADVEF---PTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLD------------ 531 (629) Q Consensus 468 P~Li~~l~pll-~~~~~~~~---p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~------------ 531 (629) |+|| |.|++ +-++-+++ ..|+++...+++..++++++|++.+.||+||+|+.+++..++++. T Consensus 445 P~Li--l~P~~qa~~~~P~~~~~~lpp~~~~~~dg~~~~~e~~g~~~~~E~~~~pda~~~~a~~~~~~~r~~~~~~~~~~ 522 (646) T protein:vir:10 445 PDLI--LDPAIQAALGLPAVQSVGLPPTAAQRTDGDLDDDESEGAPNGGEAPDQPDADEARAITAALDRRIALAARPVLA 522 (646) T ss_pred cccc--ccchhhccccCCCcCccccCCcccccccCCCCChhhcCCCCCCccCCCCCCCccccccccccccchhhhhhhhc Confidence 9998 55555 32222222 334455555666667899999999999999999888888777654 Q ss_pred -----chhHHHHHHHHHHHHHHhhcccCChh-hHHHhcccchHhhhhhcCCCChhHHHHHHhh-hhhhhhHHHHHHhCCC Q lcl|Aclame:pro 532 -----SRETAMVEALVFRALELAGKRSRTRS-LPYELRQLSDRELVRRLEPVRREHVADLIRG-WDSMLEERAVQALNMN 604 (629) Q Consensus 532 -----a~~~a~V~~lv~RALelAGkR~r~r~-~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~G-wd~~ld~~~~a~lG~D 604 (629) +.+.++|++|++|||+|||||+|+++ .++|+|+||+|+||++|+||+++++.|||+| ||+++ +++++||+| T Consensus 523 ~~~p~a~~~aav~l~v~RAL~lAG~Rlrt~~~~~a~~r~vp~he~h~~l~Pv~~~~~~rl~~G~wd~~~--~v~~~lg~D 600 (646) T protein:vir:10 523 LPSPEAVFNASAKLMILRALELAGGRLTTPAERRGRWSDVPRHELHHHVGPITPDKARRVTEGAWNHVA--VAAADLGVD 600 (646) T ss_pred cccchhHHHHHHHHHHHHHHHhccccccCchhhhHHhhcCChhhceeecCCCChhhHHHHHhcccccHH--HHHHhcCCC Confidence 34779999999999999999998866 8899999999999999999999999999999 88875 699999999 Q ss_pred HHHHHHHHHHHHHHHHhhhhccccC Q lcl|Aclame:pro 605 IPGIRAAVKRAVYGELTKTIDGEVS 629 (629) Q Consensus 605 ~~~lr~~v~~~v~~~lt~~vd~~v~ 629 (629) ++|||++|++|||++||++|.=|=- T Consensus 601 ~~~lr~~v~~~Vr~~lt~g~~~~~~ 625 (646) T protein:vir:10 601 AGELERVLSTYVLELLTRGLRHHDD 625 (646) T ss_pred hHHHHHHHHHHHHHHHhcCCCcccc Confidence 9999999999999999999765432 No 8 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=99.77 E-value=7.9e-19 Score=119.82 Aligned_cols=474 Identities=15% Similarity=0.115 Sum_probs=239.9 Q ss_pred eeeecccccCcccchhhhhccCCc-ccchhHH-------HH--HHHhhcchhhhhhhhhhhceeeeEEEEEeecCCCCCC Q lcl|Aclame:pro 23 ALVAASQPVENPGKAFRKAMGSST-RTDWQED-------AW--KAYDAVGELRYYVGWRSSSASRVRLIASAIDPDTGLP 92 (629) Q Consensus 23 ~l~aAsa~~~~~~~~~kk~~~~~~-~~~WQ~e-------AW--~~~d~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~p 92 (629) -|.|-.+-++.|...-+.++.... ...|+.. +| ..|-..+-+.-.|.-+++++|.+.|..=+.+.++. T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~~~-- 78 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTE-- 78 (518) T ss_pred CcccCceeeccchhhhhhhhhhhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCCcc-- Confidence 677777777777643222221111 0011110 11 22445667777888999999999888877776632 Q ss_pred CCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhcc--C Q lcl|Aclame:pro 93 TGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRA--S 170 (629) Q Consensus 93 tg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~--~ 170 (629) .+..+ .....+....--. +-..++++.+..+|.+-|++|+.+.--..|. .-+++.|..+.|.. . T Consensus 79 ---~~~~~---~~~~~Ll~~PN~~-~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~-------~~~L~~l~p~~Vtv~~~ 144 (518) T protein:vir:78 79 ---TEEHD---TGYAKLLADPCEY-LDPFAFWEWVASTLDIYGETYLAIQKNKSGT-------PEKLMPMHPSRVAIKRN 144 (518) T ss_pred ---ccccc---hHHHHHHhCCCCC-CCHHHHHHHHHHHHhhcCCeEEEEEEcCCCc-------EEEEEEECCCceEEEEc Confidence 22211 2345555555443 4456799999999999999999986333332 12355555554432 1 Q ss_pred --CCee--EEECCCCCCCcc--cCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceee Q lcl|Aclame:pro 171 --EKKT--IIELPTGDKHEF--RDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVF 243 (629) Q Consensus 171 --~~~~--~i~lP~g~~h~~--~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlf 243 (629) ++.. .+...++..... ....|++ ||..+|+.. ..--||+.++...+.-..-+.+...+..+.-..-.|||- T Consensus 145 ~~~~~~~y~~~~~~~~~~~~~~~~~~eIiHir~~~~dg~--~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~ 222 (518) T protein:vir:78 145 SRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDGL--ERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLR 222 (518) T ss_pred CCCCEEEEEEEecCCccceeEEecCCcEEEecCCCCCcc--cccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEe Confidence 2222 233333322222 2334444 555554422 223577766655554444444443333333333345665 Q ss_pred ecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCch Q lcl|Aclame:pro 244 VPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQV 323 (629) Q Consensus 244 vPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dv 323 (629) +|+.++ ....+.+.+.|. ..+.-.+. +-=++|+. + --+++-|.+... T Consensus 223 ~~~~ls----------------------~e~~~~~k~~~~----~~~~G~~n--ag~~~vL~--~--G~~~~~l~~~~~- 269 (518) T protein:vir:78 223 HEKRLS----------------------PEAQQRLREQFD----RAHAGSSN--TGKTMVVE--E--GMEPIPLQLTAV- 269 (518) T ss_pred cCCCCC----------------------HHHHHHHHHHHH----HHhcCccc--CCceeEcC--C--CceEEeccCChh- Confidence 554433 123445555554 23321111 12233332 2 124455554322 Q ss_pred hHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhe Q lcl|Aclame:pro 324 TEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAY 403 (629) Q Consensus 324 te~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~y 403 (629) +.--+++|+..+..||..|.||| .+||+..++|+.++.+....-++..|.|.+..|.++|++.++.. ++ ..| T Consensus 270 d~q~le~r~~~~~eIa~afgVPp-~~lg~~~~st~sn~e~~~~~f~~~tL~P~~~~ie~eln~~L~~~-~~------~~~ 341 (518) T protein:vir:78 270 EMQFIEARQLNREEVCGVYDIAP-PIVHILDRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQY-WV------RKN 341 (518) T ss_pred HHHHHHHHHHHHHHHHHHhCCCH-HHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc------Ccc Confidence 22348999999999999999999 67798888999999999988899999999999999999876643 21 346 Q ss_pred EeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhh-hhhhhc- Q lcl|Aclame:pro 404 VVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP-TLAVLI- 478 (629) Q Consensus 404 v~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~-~l~pll- 478 (629) -|+||.+.|. ++|..+.+ ..+++.|.+|.+++|++.||.--+.+. |-+- +++ .+.|+= T Consensus 342 ~~~fd~~~Ll-r~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~-----gD~~-----------~v~~n~~pl~~ 404 (518) T protein:vir:78 342 RMKFDIDDVI-QPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPK-----ADEL-----------YANSALQPLGA 404 (518) T ss_pred eEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC-----Ccee-----------eecccceeccc Confidence 7899999983 34554444 458889999999999999997432111 1000 111 122221 Q ss_pred ---ccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC---CCCcccC----CC----------CCchhHHHH Q lcl|Aclame:pro 479 ---PELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDA---GTDDSDQ----AS----------LDSRETAMV 538 (629) Q Consensus 479 ---~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~---~~d~~~~----a~----------~~a~~~a~V 538 (629) +...+.+.|.++. +...+..+.++.......+.++++.+.. ..+++.. ++ ..++|++.- T Consensus 405 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (518) T protein:vir:78 405 TPDGAVEGEEAPAPKR-PASTPVASLDQSPPASVPGLSPTNSDRSTDSGKTEPRRLMQKPPPKESSPKHLRAVKGAMGRG 483 (518) T ss_pred ccccccCCCCCCCCCC-CCcccccccccCccccCCCCCcccccccccccccchhcccCCCCcccccchHHHHHHHHhhcC Confidence 1112222222211 0111111111111222334445544221 1111111 00 001122222 Q ss_pred HHHHHHHHHHhhcccCChhhHHHhcccchHhhhhhcCCCChhHHHHHHhhhhh Q lcl|Aclame:pro 539 EALVFRALELAGKRSRTRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDS 591 (629) Q Consensus 539 ~~lv~RALelAGkR~r~r~~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~ 591 (629) +.+-+-||.||-|---+-.+ | .+...+ .|-+.-|. T Consensus 484 ~~~~~~~~~~~~~~~~~~~~------~---~~~~~~---------~~~~~~~~ 518 (518) T protein:vir:78 484 KDIKGFALQLAEKYPDDLED------I---LLAVQL---------ALAERKDN 518 (518) T ss_pred CcchhhhhhhhhhcchhHHH------H---HHHHHH---------hhhhccCC Confidence 33334455555553222100 0 000000 00000011 No 9 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=99.77 E-value=1.6e-18 Score=118.07 Aligned_cols=474 Identities=15% Similarity=0.108 Sum_probs=241.3 Q ss_pred eeeecccccCcccchhhhhccCCcc-cchhHH-------HH--HHHhhcchhhhhhhhhhhceeeeEEEEEeecCCCCCC Q lcl|Aclame:pro 23 ALVAASQPVENPGKAFRKAMGSSTR-TDWQED-------AW--KAYDAVGELRYYVGWRSSSASRVRLIASAIDPDTGLP 92 (629) Q Consensus 23 ~l~aAsa~~~~~~~~~kk~~~~~~~-~~WQ~e-------AW--~~~d~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~p 92 (629) -|.|..|.++.|...-+.++....- ..|+.. +| ..|-..+-+.-.|.-+++++|.+.|..-+.+.|++.. T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~~~~~ 80 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGDTETE 80 (518) T ss_pred CcccCceeecCchhhhhhhhhhcccccccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCCCcee Confidence 7888888888886543333322221 112110 11 1233455667778889999999988888888774322 Q ss_pred CCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhcc--C Q lcl|Aclame:pro 93 TGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRA--S 170 (629) Q Consensus 93 tg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~--~ 170 (629) . .+ -.+..+.+..- --+-..++++.+..+|.+-|++|+.+.--..|. .-+++.|..+.|.. . T Consensus 81 ~---~~-----~~~~~Ll~~PN-~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~-------~~~L~~l~p~~v~v~~~ 144 (518) T protein:vir:10 81 E---SD-----TGYAKLLADPC-EYLDPFAFWEWVASTLDIYGETYLAIQKNKSGT-------PEKLMPMHPSRVAIKRN 144 (518) T ss_pred c---cc-----hHHHHHHcCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc-------EEEEEEECCCceEEEEc Confidence 1 11 23455666554 334456799999999999999999876433332 12355555554431 1 Q ss_pred --CCeeE--EECCCCCCCccc--CCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceee Q lcl|Aclame:pro 171 --EKKTI--IELPTGDKHEFR--DGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVF 243 (629) Q Consensus 171 --~~~~~--i~lP~g~~h~~~--~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlf 243 (629) ++... +...++...... ...|++ ||..+|+- -..--||+.++...+.-..-+.+...+..+.=..-.|||- T Consensus 145 ~~~~~~~y~~~~~~~~~~~~~~~~~~eViHir~~s~dg--~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~ 222 (518) T protein:vir:10 145 SRTGRYEYYFQAGAGVGTQLVSFADDEVVPIRFFNPDG--LERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLR 222 (518) T ss_pred CCCCEEEEEEEecCCccceEEEecCCcEEEecCCCCCc--ccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEe Confidence 12222 333333222211 234444 55444432 1234477766665554444444443333333333345666 Q ss_pred ecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCch Q lcl|Aclame:pro 244 VPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQV 323 (629) Q Consensus 244 vPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dv 323 (629) +|+.++ ....+.+.+.|- ..+.-.+. +--++|+. + --+++-|.+... T Consensus 223 ~~~~ls----------------------~e~~~~~k~~~~----~~~~G~~n--ag~v~vL~--~--G~~~~~l~~s~~- 269 (518) T protein:vir:10 223 HEKRLS----------------------EAAQQRLREQFD----RAHSGSSN--TGKTMVVE--E--GMEPIPLQLTAV- 269 (518) T ss_pred cCCCCC----------------------HHHHHHHHHHHH----HHhcCccc--cCcceEcC--C--CceEEEccCChh- Confidence 554433 123344555443 22221111 12233332 1 124444554322 Q ss_pred hHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhe Q lcl|Aclame:pro 324 TEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAY 403 (629) Q Consensus 324 te~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~y 403 (629) +.=-+++|+..+..||..|.||| .+||+..++|+.++.+....-++..|.|.+..|+++|++.++.. ++ ..| T Consensus 270 D~q~le~r~~~~~eIa~afgVPp-~~lg~~~~~t~sn~eq~~~~f~~~tL~P~l~~ie~~ln~~L~~~-~~------~~~ 341 (518) T protein:vir:10 270 EMQFIEARQLNREEVCGVYDIAP-PIVHILDRATFSNISAQMRAFYRDTMAIPIARIQSAMDKYVGQY-WV------RKN 341 (518) T ss_pred HHHHHHHHHHHHHHHHHHhCCCH-HHhccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc------CCc Confidence 22248999999999999999999 77798778999999999999899999999999999999887654 21 357 Q ss_pred EeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchh-hhhhhhc- Q lcl|Aclame:pro 404 VVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL-PTLAVLI- 478 (629) Q Consensus 404 v~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li-~~l~pll- 478 (629) -|+||.+.|.. +|..+.+ ..++..|.+|.+++|++.|++.-+.+ .|-+- ++ ..+.|+= T Consensus 342 ~~~fd~~~llr-~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~-----~gD~~-----------~~~~n~~pl~~ 404 (518) T protein:vir:10 342 RMKFDIDDVIQ-PDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDP-----KADEL-----------YANSALQPLGA 404 (518) T ss_pred eEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC-----CCCee-----------eecccceeccc Confidence 78999999843 3554443 45888899999999999999743211 11000 11 1122221 Q ss_pred ---ccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC---CCcccC----CCCC----------chhHHHH Q lcl|Aclame:pro 479 ---PELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAG---TDDSDQ----ASLD----------SRETAMV 538 (629) Q Consensus 479 ---~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~---~d~~~~----a~~~----------a~~~a~V 538 (629) +...+.+.|.++.. ......+.++.......+.++++.+..+ .+++.. ++.. ++|++.- T Consensus 405 ~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (518) T protein:vir:10 405 TPDGAVEGEEAPAPKRP-ASTPVASLDQSPPTSVPGLSPTNSDRSTDSGKTEPRRLMQKPPPKESSPKHLRAVKGAMGRG 483 (518) T ss_pred ccccccCCCCCCCCCCC-CccccccccccccccCCCCCcccccccccccccchhccccCCCcccccchHHHHHHHHhhcC Confidence 11222222222111 1111111111122233344455443211 111111 1110 1122222 Q ss_pred HHHHHHHHHHhhcccCChhhHHHhcccchHhhhhhcCCCChhHHHHHHhhhhh Q lcl|Aclame:pro 539 EALVFRALELAGKRSRTRSLPYELRQLSDRELVRRLEPVRREHVADLIRGWDS 591 (629) Q Consensus 539 ~~lv~RALelAGkR~r~r~~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~Gwd~ 591 (629) +.+-+-||.||-|---+-.+ | .+...+ .|-+.-|. T Consensus 484 ~~~~~~~~~~~~~~~~~~~~------~---~~~~~~---------~~~~~~~~ 518 (518) T protein:vir:10 484 KDIKGFALQLAEKYPDDLED------I---LLAVQL---------ALAERKDN 518 (518) T ss_pred ccchhHhhhhhhhcchhHHH------H---HHHHHH---------hhhhccCC Confidence 33334455555543221100 0 000000 00000011 No 10 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=99.75 E-value=7.7e-19 Score=119.88 Aligned_cols=420 Identities=13% Similarity=0.080 Sum_probs=219.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) ||.---|+.++=++..... ....-..+.-++.+... ++..-..+.+-..+-+.-.|.-+++.++.+-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~-~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~ 68 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKF-----------NDAFIKYIGQTFTKYDN-NGKTYLEQGYNINPDVYSCISQMAAKTVAVPY 68 (460) T ss_pred CchhHHHHHhhhhccCCCc-----------hHHHHHhhccccCCCcc-chhhhhHHHHhcchHHHHHHHHHHHhhhhCce Confidence 7766666654311000000 00000011111111111 34444444455567777778889999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhc---------------------CChhhHHHHHHHHhcceeecCceEE Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIA---------------------GGALGQAQLIKRVVEQLTVAGETWV 139 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~ia---------------------GG~lGQaqLlkr~~~~LtVpGE~wI 139 (629) ..-+.+.|++........ ..........+... ---+-..++++.+..++-+-|++|+ T Consensus 69 ~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 146 (460) T protein:vir:10 69 TIKVVKDTKAYQQLNNLN--ISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYF 146 (460) T ss_pred EEEeccCCccchhhhhhh--hhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEE Confidence 999999883322111000 00000111111111 1233567899999999999999998 Q ss_pred EEEEcCCcccccCcccchhhheecHHHhcc--CCC---------eeEEECCCCCCCcccCCCceE-EEEeCCCcc---cc Q lcl|Aclame:pro 140 AILFTDKSRLDSNGNPVPEWLALTPEEVRA--SEK---------KTIIELPTGDKHEFRDGLDGM-FRVWNPRAR---RA 204 (629) Q Consensus 140 ~il~r~~~~~d~~~~~~~eW~~vt~~eI~~--~~~---------~~~i~lP~g~~h~~~~~~D~~-~RvW~P~Pr---ra 204 (629) .++-...+. ..|.+.. -+.|..+.|.. ..+ ...+..+.|.+.......|++ ||.++|.-. .. T Consensus 147 ~i~r~~~~~--~~G~~~~-L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~ 223 (460) T protein:vir:10 147 YLMSPDDGI--NAGVPSQ-MYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSH 223 (460) T ss_pred EEEecCCCc--cCceeEE-EEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCc Confidence 876443321 2222221 22233333321 111 122344555554444555555 787777532 22 Q ss_pred cCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHH Q lcl|Aclame:pro 205 REPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQ 284 (629) Q Consensus 205 ~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~q 284 (629) ..--||+.++...+.-. ....... .++..||. .|...-.+. + .......+++.+.|.+ T Consensus 224 ~~G~sp~~~~~~~i~~~----~~~~~~~-~~~f~ng~--~~~~i~~~~----------~-----~l~~e~~~~~~~~~~~ 281 (460) T protein:vir:10 224 LYGMSPIRAILRNINSQ----NSTIDNN-VKTMQNGG--VFGFIHGGS----------T-----GLTQPQADSLKQRLTE 281 (460) T ss_pred cccccHHHHHHHHHHHH----HHHHHHH-HHHHhcCC--CcceeeecC----------C-----CCCHHHHHHHHHHHHH Confidence 34457877765554433 3333222 22334442 232221110 0 0112345566666653 Q ss_pred HHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHh Q lcl|Aclame:pro 285 VAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAW 362 (629) Q Consensus 285 va~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw 362 (629) . +.-.+. +--|+++ +++ -+++.|.....- .--+++|+..+..||+.|.||| .|||+. ++.|+.++. T Consensus 282 ~----~~g~~n--~g~~~vl--~~g--~~~~~l~~~~~d-~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~~~sn~e 349 (460) T protein:vir:10 282 M----DKSPDR--LSQIAGA--SGE--IAFTKISLNTDE-LKPFDYLKYDQKAICNALGWSD-KLLNNNEGGGLNTGNLE 349 (460) T ss_pred H----hcCccc--cCCceec--CCC--ceEEEccCChhH-HHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCCccccHH Confidence 2 222111 2234444 222 244555543222 2238999999999999999999 588863 356888999 Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCC Q lcl|Aclame:pro 363 QIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGL 442 (629) Q Consensus 363 ~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl 442 (629) +....-++..|.|.+..|+++|++.+|.+ +-....|.|+||.+.|..--.......+++++|++|.+++|++.|+ T Consensus 350 ~~~~~f~~~~l~P~~~~ie~~ln~kl~~~-----~~~~~~~~i~~d~~~l~~l~~d~~~~~~~~~~g~~T~NE~R~~~g~ 424 (460) T protein:vir:10 350 EERKRVVTDNIQPDLVILKQAFDKKFIKR-----FKGYENAVIEWDISELPEMQTDMVAMASWLNTIPVTPNEIRIAMKY 424 (460) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----ccccCCceEEeecchhhhHHHHHHHHHHHHhCCCCCHHHHHHHhCC Confidence 99999999999999999999999988754 2244568899999998532222333456899999999999999999 Q ss_pred Ccc--cccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCC Q lcl|Aclame:pro 443 ADD--TVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRRE 512 (629) Q Consensus 443 ~ed--~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ 512 (629) +.- .+-|.- ++ |. -.-|.+....+....+..+++ T Consensus 425 ~pi~~~~gD~~------------------~~---------------~~---n~~~~~~~~~~~~~~~~nq~~ 460 (460) T protein:vir:10 425 ETLNQDGMDIV------------------FM---------------PS---NKVRIDDVSNNLIDSAFNQNQ 460 (460) T ss_pred CCCCCCCCCee------------------ee---------------cc---cccchhhcccccCCCcccCCC Confidence 842 233310 00 00 000111111000000001111 No 11 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=99.73 E-value=4.5e-18 Score=115.68 Aligned_cols=400 Identities=13% Similarity=0.147 Sum_probs=224.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHH--HHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQED--AWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~e--AW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |==. .+.+|. +..+. +.+...+ -..+.+. ..|... .++.+-..+-+.-.+.-+++.+|.+ T Consensus 1 ~~f~--~~f~r~-~~~~~-------------~~~~~~~-~~~~~~~-~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~ 62 (413) T protein:vir:48 1 MFFS--GLFQRK-SDAPV-------------TTPAELA-EAIGLSY-DTYTGKRISSQRAMRLTAVYSCVRVLAESVGML 62 (413) T ss_pred Cccc--hhhccC-ccCCc-------------cchHHHH-HhhhcCc-ccccCceechhhhhccHHHHHHHHHHHHhhhhC Confidence 3221 222331 11111 1111000 0000000 011111 1233445666777888999999999 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .+..-+.+.+ |.-+ ..++ .+..+...=-..-+...++++.+..+|.+-|++||.+. |..|. +. + T Consensus 63 p~~~~~~~~~-~~~~-~~~~------~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~-~~~g~------~~-~ 126 (413) T protein:vir:48 63 PCSLYKISGT-LKTR-VVDE------RLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKV-KALGE------VV-E 126 (413) T ss_pred ceEEEEecCC-ccee-eccc------HHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEE-eCCCc------EE-E Confidence 9988887754 3221 1222 35556554344556777899999999999999998875 33332 11 2 Q ss_pred hheecHHHhc--cCCCe---eEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 159 WLALTPEEVR--ASEKK---TIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 159 W~~vt~~eI~--~~~~~---~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) .+.|-.+.|. ..+++ -.+..+.|..+.|.. .+++ ||.-+++ -..--||+..+...+.-..-..+...+.. T Consensus 127 L~~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~-~evih~~~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~~ 202 (413) T protein:vir:48 127 LLPIDPGCVEPKLNSQWQPVYQVTFPDGSVDVLTQ-DEIWHVRTLTLD---GLVGLNPIAYAREAISLAAATEEHGARLF 202 (413) T ss_pred EEEEcCceEEEEEcCCceEEEEEEecCceEEEEcc-ccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 2333334333 22222 236778887766543 3333 4433322 24456888887777665555555555555 Q ss_pred HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhc Q lcl|Aclame:pro 233 KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIK 312 (629) Q Consensus 233 ~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~ 312 (629) +.-..-.|||-+|+.++ ....+.+.+.|.+.-. ...+.+ -|+|+ ++. - T Consensus 203 ~ng~~p~gil~~~~~~~----------------------~e~~~~~~~~~~~~~~-g~~n~g-----~~~vl--~~g--~ 250 (413) T protein:vir:48 203 GNGAVTSGVLRTEQKLT----------------------PDAYERLKKDFEERHT-GLGNAH-----RPMIL--EMG--L 250 (413) T ss_pred hccCCcceEEEeCCCCC----------------------HHHHHHHHHHHHHHhc-CccccC-----cceec--CCC--c Confidence 55555568877766544 1234556666552221 112222 23443 322 2 Q ss_pred CceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 NVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 313 ~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) +++-|.+ ...+. -+++|+..+..||+.|.||| .+||...++|+.++.+....-++..|.|.++.|+++|++.+|.+ T Consensus 251 ~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~~n~e~~~~~f~~~~i~P~~~~ie~~l~~~L~~~ 327 (413) T protein:vir:48 251 DWKSMAL--NAEDSQFLETRKFQLEEICRLFRVPL-HMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRE 327 (413) T ss_pred eEEeccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc Confidence 4555544 33333 37899999999999999999 67787678899999999999999999999999999999998876 Q ss_pred HHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 392 VLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDP 468 (629) Q Consensus 392 ~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P 468 (629) .- + ..|.|+||.+.|.. +|..+.+ ..+++.|++|.+++|+++|++.-.+=|. T Consensus 328 ~~---~---~~~~~~fd~~~l~~-~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~------------------ 382 (413) T protein:vir:48 328 SK---Q---GKFYAKFNAGALLR-GDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDV------------------ 382 (413) T ss_pred cc---c---CCeEEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce------------------ Confidence 32 1 25789999999854 3544443 3488899999999999999974322111 Q ss_pred chhhhhhhhcccccCccCCCC-CCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCC Q lcl|Aclame:pro 469 NLLPTLAVLIPELADVEFPTP-TVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQAS 529 (629) Q Consensus 469 ~Li~~l~pll~~~~~~~~p~p-~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~ 529 (629) + -+|.- .++...+++ . ..+..+++.+ ++++ T Consensus 383 -~--------------~~~~n~~~~~~~~~~-~-----------~~~~~~~~~~----~~~~ 413 (413) T protein:vir:48 383 -Y--------------LTPMNMTTSPSAGDD-N-----------GKKKESGDAD----KTAS 413 (413) T ss_pred -e--------------ecccccccccccccc-C-----------CCCCCCCCcc----ccCC Confidence 0 00000 000001110 0 0011111111 1111 No 12 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=99.73 E-value=3.3e-18 Score=116.41 Aligned_cols=429 Identities=17% Similarity=0.166 Sum_probs=222.8 Q ss_pred CCCCcceeEEcCCCCC---CCcccceeeecccccCcccchhhhhccCCcc--cchhHHHHHHHhhcchhhhhhhhhhhce Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEP---VSTRQRALVAASQPVENPGKAFRKAMGSSTR--TDWQEDAWKAYDAVGELRYYVGWRSSSA 75 (629) Q Consensus 1 ma~t~lr~vr~pk~~~---~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~--~~WQ~eAW~~~d~VgELryyvgWr~~s~ 75 (629) |.==+ |+..|.+... ...| .-.+++. ...+ .++... ...-.+ ..+ .++-+.-.|.-+++++ T Consensus 1 Mg~~~-~l~~r~~~~~~~~~~~~------~~~~~~~-~~~~---~~~~~~~g~~V~~~--~al-~~~~V~~~v~~Ia~~i 66 (457) T protein:vir:13 1 MGFWS-ALFGRGHSPALDGIEAR------AWEPYDP-SIYN---LGAVAASGETVTPH--DAL-QVSAVFASVRLLSETI 66 (457) T ss_pred Cchhh-hhhcccccccccccccc------cccccch-HHHh---hcccccCCceechH--Hhh-ccHHHHHHHHHHHHhh Confidence 54322 3333322211 0000 0011111 1000 000000 000000 011 2444556778899999 Q ss_pred eeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCccc Q lcl|Aclame:pro 76 SRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNP 155 (629) Q Consensus 76 Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~ 155 (629) |.+-|..=+-+.++.++. .+ ....+..+.-..+ +...++++.++.++-+-|++|+.| .+..+.. T Consensus 67 A~lp~~~~~~~~~~~~~~---~~-----~~l~~~ln~~~n~-~t~~~f~~~~~~~lll~Gna~~~i-~~~~g~~------ 130 (457) T protein:vir:13 67 ATLPLSTYSKRGGSRKEI---VT-----PEWLDYPNAEPGG-MGRIDILSQTVLSLLLQGNAFLAV-RWQGPNI------ 130 (457) T ss_pred ccCceEEEEecCCccccc---cc-----chHHHhccccCCC-CCHHHHHHHHHHHHhhcCCeEEEE-EecCCcE------ Confidence 999888766554322222 12 1344444544454 567899999999999999999887 3443321 Q ss_pred chhhheecHHHhcc-----CCC--e--eEEECCCCCC-CcccC-CCceEEEEeCCCcccccCCccchhhhHHHHHHHHhh Q lcl|Aclame:pro 156 VPEWLALTPEEVRA-----SEK--K--TIIELPTGDK-HEFRD-GLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRT 224 (629) Q Consensus 156 ~~eW~~vt~~eI~~-----~~~--~--~~i~lP~g~~-h~~~~-~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rt 224 (629) . +.+.|-++.|.. ++. + .......+.. +.... ..+-||++=.+++.-...--||+..+...+.=..-. T Consensus 131 ~-~l~~l~p~~v~v~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~ 209 (457) T protein:vir:13 131 V-GLDVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAA 209 (457) T ss_pred E-EEEEEccCceEEEEecCCCccceeEEEEEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHH Confidence 1 122232222221 111 0 1222222222 11111 223456665555544456678877777666655555 Q ss_pred hHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceee Q lcl|Aclame:pro 225 TKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFA 304 (629) Q Consensus 225 tk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva 304 (629) .+...+..+.-.+-.|||-+|+.++ ..+.+.+.+.|.+ .+.-.+.+- =++|+ T Consensus 210 ~~~~~~~f~ng~~p~gil~~~~~ls----------------------~e~~~~~~~~~~~----~~~g~~nag--~~~vl 261 (457) T protein:vir:13 210 QKYGSKFFANGAMPGAVVEVPGTMS----------------------EEGLARAREAWRA----ANSGVDNAH--RVALL 261 (457) T ss_pred HHHHHHHHhcCCCcceEEEcCCCCC----------------------HHHHHHHHHHHHH----HhcCccccC--cceec Confidence 5555555555556678888776544 1245556666653 333222221 12333 Q ss_pred eechHHhcCceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhccccCcchhh--HhHHhhhhhhhhhhhHHHHHH Q lcl|Aclame:pro 305 AAPGELIKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWS--AWQIGDEDVRLHILPPVEMLC 381 (629) Q Consensus 305 ~vP~E~i~~ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nhws--Aw~i~de~v~~hI~P~~~~i~ 381 (629) ++ --+++-|.. ...+ --+++|+..+..||..|.||| .|||...+++.|+ ..+....=++..|.|.++.|+ T Consensus 262 --~~--g~~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie 334 (457) T protein:vir:13 262 --TE--GAKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPP-HLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIE 334 (457) T ss_pred --CC--CceEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHH Confidence 22 234555554 3333 237899999999999999999 6779877777754 467776677888999999999 Q ss_pred HHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCccccc--CCCCHHHH Q lcl|Aclame:pro 382 EAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVY--DFTTPEGW 456 (629) Q Consensus 382 ~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~y--d~tt~Eg~ 456 (629) ++|++.+|.+. + ...|.|+||.+.|. +.|..+.+ ..++..|++|.+++|++.|+..-.+. |. T Consensus 335 ~~ln~~L~~~~----~--~~~~~i~fd~~~l~-~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g~~d~------ 401 (457) T protein:vir:13 335 AGFNRLLFAET----A--DRFRFVKFNLDEIK-RGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDGLGEK------ 401 (457) T ss_pred HHHHHhhcCcc----c--cCceeEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccc------ Confidence 99999888652 1 13467899999984 34544333 34888999999999999999743222 10 Q ss_pred HHHHHHHHhcCcchhh-hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCC---CCCCCCCCCC Q lcl|Aclame:pro 457 AQWARDRVGQDPNLLP-TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASR---REEPDTEDDA 520 (629) Q Consensus 457 ~q~a~d~v~~~P~Li~-~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~---~~ePdTe~d~ 520 (629) -++| .+.++-.......-+.|+...++++++..+.+.++.+. +.+.+.|+|+ T Consensus 402 ------------~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~ 457 (457) T protein:vir:13 402 ------------YRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATEEDDEDDA 457 (457) T ss_pred ------------eeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccCCCCcccccC Confidence 0111 11111111111222333333334443333333222222 1222223232 No 13 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=99.71 E-value=3.9e-17 Score=110.53 Aligned_cols=405 Identities=12% Similarity=0.092 Sum_probs=219.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |=-. |+..+ |+-++.......+ .+..-.++..-..+..=.++-+=..+.+.-.|.-++++||++.+ T Consensus 1 m~~~--~~f~~----------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~ 66 (416) T protein:vir:12 1 MLLE--RMFEK----------RSGSSDHEDGFNN--ILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPI 66 (416) T ss_pred Cccc--hhccc----------ccCccccCccchh--HHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCce Confidence 2111 11111 1111111111100 00000111100000000111111356677778889999999998 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHH-HhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVN-QIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~-~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) ..=+-+ +.|...- .+++ ...+.. ..-- -+-..++++.++.+|-+-|++|+.+.--..|. ..++ T Consensus 67 ~~~~~~-~~~~~~~-~~~~------l~~~l~~~PN~-~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~-------~~~L 130 (416) T protein:vir:12 67 HTYKRT-DGGIERK-PEHK------SAHAVYARPNP-YMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGY-------PEAL 130 (416) T ss_pred EEEEec-CCccccc-cccH------HHHHHHhhccc-CCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc-------EEEE Confidence 765655 3344331 2221 333333 3333 34455799999999999999999876323332 2235 Q ss_pred heecHHHhc--c--CCCeeEEE-CCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 160 LALTPEEVR--A--SEKKTIIE-LPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) Q Consensus 160 ~~vt~~eI~--~--~~~~~~i~-lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~ 233 (629) +.|..+.|+ . .++..-.. ...|...+|. ..+.+ ||-.+++. ..--||+.++...+.-.....+...+..+ T Consensus 131 ~~l~~~~v~v~~~~~~~~~~~~~~~~g~~~~~~-~~eiih~~~~~~~~---~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ 206 (416) T protein:vir:12 131 FPLRPDYTNAYVHPTTGMLWYQTVLNGKAIELY-DYEVLHFKGLSTDG---IHGKSPIGVVREHIGAQAAATKYNAKLYK 206 (416) T ss_pred EEECCcceEEEEeCCCcEEEEEEecCCeEEEec-CccEEEecCcCCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 555555554 1 22222222 2344433332 22332 44333332 34568888877777666666666666666 Q ss_pred hHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcC Q lcl|Aclame:pro 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) Q Consensus 234 SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ 313 (629) .-..-.|||-+|+.++ ....+.+.+.+-... ..+. ++|+ ++. -+ T Consensus 207 ng~~p~~il~~~~~~~----------------------~e~~~~~~~~~~~~~-----~~~~-----~~vl--~~g--~~ 250 (416) T protein:vir:12 207 NEATPRGILKVPAFLD----------------------EKPKENVRKEWKRVN-----KVEN-----IAII--DYG--LE 250 (416) T ss_pred cCCCCceEEecCCCCC----------------------HHHHHHHHHHHHHHh-----cCCC-----eeec--CCC--ce Confidence 6666678887765433 124566666664321 1122 2222 333 25 Q ss_pred ceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 VTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) Q Consensus 314 ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~L 393 (629) ++-|.+... +.--+++|+.....||+.|.||| .+||...++|+.++-+....-++..|.|.+..|+++|++.+|-+.- T Consensus 251 ~~~l~~~~~-d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l~~~~~ 328 (416) T protein:vir:12 251 YQSISMPLQ-EAQFVESMKFNKAQISMIYKVPL-HKLNELDKATFSNIEHQSIEYVRNTLQPWIVNFEQELNVKLFLDHD 328 (416) T ss_pred EEEccCChh-hHHHHHHHHHHHHHHHHHhCCCH-HHhCCccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh Confidence 666665432 22347899999999999999999 7777667899999999999999999999999999999999885432 Q ss_pred HhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 394 MREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 394 e~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) . ...|-|-||.++|. +.|..+.+ ..++++|++|.+++|+++|++.-.+=|. -+ T Consensus 329 ~-----~~g~~i~fd~~~l~-~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~------------------~~ 384 (416) T protein:vir:12 329 Q-----KSGHYVKFNIDSEL-RGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDK------------------YI 384 (416) T ss_pred h-----cCCceEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce------------------ee Confidence 1 13367889999973 34544444 4589999999999999999985432221 00 Q ss_pred hhhhhhhcccccCccC-CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC Q lcl|Aclame:pro 471 LPTLAVLIPELADVEF-PTPTVALPPAEEQDGDEEASGASRREEPDTED 518 (629) Q Consensus 471 i~~l~pll~~~~~~~~-p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~ 518 (629) ++. ....++. ..+.. .. ..++..|.|...|+ T Consensus 385 ~~~------n~~~~~~~~~~~~-~~----------~~~~~~gge~~~~g 416 (416) T protein:vir:12 385 SSL------NYVFLDFLEEYQR-LK----------AGGAMKGGDNKNEG 416 (416) T ss_pred ecc------ccccccccchhhc-cc----------cccccCCCCCcCCC Confidence 000 0000000 00000 00 01112233333333 No 14 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=99.70 E-value=7.9e-17 Score=108.86 Aligned_cols=413 Identities=12% Similarity=0.119 Sum_probs=219.4 Q ss_pred CCCCc-ce-eE-EcCCCCCCCcccceeeecccccCcccchhhhhccCCcc---cchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPTS-LR-IV-RRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTR---TDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t~-lr-~v-r~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~---~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) |.==+ ++ .. -..|.++. .+.++ .+...|-+-.+.+.. -+.+ ..| ..+.+.-.+.-+++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~---~~~~~-------~~~~~~~~~~g~~~~~~~v~~~----~al-~~~~v~~~i~~ia~~ 65 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQ---VIELN-------KDDEKLLEWLGISPSTISVKGK----NAL-KVATVFACIKILSES 65 (432) T ss_pred CChHHHHHHhcCccccCccc---ccccC-------CchHHHHHHhCCCcCccccchh----hhh-ccHHHHHHHHHHHHh Confidence 32211 00 00 01111111 11111 111122111111110 0011 112 355666677788999 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +|++.+..-+-+++ |... ..++ .+..+.+.=----+-..++++.++.+|.+-|++|+.+.-...|.. T Consensus 66 ia~lp~~~~~~~~~-~~~~-~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~----- 132 (432) T protein:vir:10 66 VSKLPLKIYQEDEY-GIQR-GTKH------YLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKV----- 132 (432) T ss_pred hccCceEEEEecCC-ceee-cccc------HHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcE----- Confidence 99999988777755 3221 1223 355555532334455668999999999999999999864333321 Q ss_pred cchhhheecHHHhcc--C-------CCeeEEEC-CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhh Q lcl|Aclame:pro 155 PVPEWLALTPEEVRA--S-------EKKTIIEL-PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRT 224 (629) Q Consensus 155 ~~~eW~~vt~~eI~~--~-------~~~~~i~l-P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rt 224 (629) .+++.|..+.|.. . ........ ..|....| +..| ||++=++.|.....--||+.++...+.-.... T Consensus 133 --~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~-~~~e-iih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~ 208 (432) T protein:vir:10 133 --QALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVL-KPEE-ILHFKNGITLDGLVGVPTMEYLKSTLENSASA 208 (432) T ss_pred --EEEEEEcCceeEEEEcCcccccccceEEEEEecCCeEEEE-cccc-EEEecCCCCCCCcccccHHHHHHHHHHHHHHH Confidence 1233333333321 1 11111122 22222222 2223 55553445566666789998888877766666 Q ss_pred hHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceee Q lcl|Aclame:pro 225 TKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFA 304 (629) Q Consensus 225 tk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva 304 (629) .+...+..+.-..-.|||-+|+.++ ....+.+.+.|.+.- ...++.+. ++|+ T Consensus 209 ~~~~~~~~~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~~-~g~~n~~~-----~~vl 260 (432) T protein:vir:10 209 DKFINNFYKQGLQVKGLVQYVGDLN----------------------EDAKKVFRENFESMS-SGLQNSHR-----IALM 260 (432) T ss_pred HHHHHHHHhccCCccEEEEcCCCCC----------------------HHHHHHHHHHHHHHh-cccccCCc-----ceec Confidence 6666666555555567877766543 113344555554211 11222221 2222 Q ss_pred eechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHH Q lcl|Aclame:pro 305 AAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAI 384 (629) Q Consensus 305 ~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~al 384 (629) |+. -+++.|.+.. .+.--+++|+..+..||+.|.||| .+||...++|..++.+....-++..|.|.+..|+++| T Consensus 261 --~~g--~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVP~-~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~l 334 (432) T protein:vir:10 261 --PVG--YQFQPISLNM-SDAQFLENTELTIRQIATAFGIKM-HQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEM 334 (432) T ss_pred --CCC--ceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 332 2566665532 223347899999999999999999 7778777889999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHH Q lcl|Aclame:pro 385 TNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWAR 461 (629) Q Consensus 385 t~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~ 461 (629) ++.+|-+.--. ..|-|.||.+.|.. +|..+.+ ..+++.|++|.+++|+++|++.-.+=|- T Consensus 335 n~kLl~~~~~~-----~g~~~~fd~~~l~~-~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~----------- 397 (432) T protein:vir:10 335 TYKLFLDSELD-----KGFYSKFNVDAILR-ADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR----------- 397 (432) T ss_pred HHhhcChhhcC-----CCcEEEeechhhhc-CCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe----------- Confidence 99988653321 23557899999843 3444433 3488899999999999999974322220 Q ss_pred HHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 462 DRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 462 d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) -+++. ...+++. .......+.+...+..+ .-.|++ T Consensus 398 -------~~~~~------n~~~~~~--~~~~~~k~~~~~~~~~~--------~~~~~~ 432 (432) T protein:vir:10 398 -------LLVNG------NMLPIDM--AGQAYLKGGDTNGEVSK--------EGNEGN 432 (432) T ss_pred -------Eeecc------cccchhh--ccccccCCCCCCCCCCC--------CCCCCC Confidence 00000 0000000 00000011111111000 111111 No 15 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=99.70 E-value=7.9e-17 Score=108.86 Aligned_cols=413 Identities=12% Similarity=0.119 Sum_probs=219.4 Q ss_pred CCCCc-ce-eE-EcCCCCCCCcccceeeecccccCcccchhhhhccCCcc---cchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPTS-LR-IV-RRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTR---TDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t~-lr-~v-r~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~---~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) |.==+ ++ .. -..|.++. .+.++ .+...|-+-.+.+.. -+.+ ..| ..+.+.-.+.-+++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~---~~~~~-------~~~~~~~~~~g~~~~~~~v~~~----~al-~~~~v~~~i~~ia~~ 65 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQ---VIELN-------KDDEKLLEWLGISPSTISVKGK----NAL-KVATVFACIKILSES 65 (432) T ss_pred CChHHHHHHhcCccccCccc---ccccC-------CchHHHHHHhCCCcCccccchh----hhh-ccHHHHHHHHHHHHh Confidence 32211 00 00 01111111 11111 111122111111110 0011 112 355666677788999 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +|++.+..-+-+++ |... ..++ .+..+.+.=----+-..++++.++.+|.+-|++|+.+.-...|.. T Consensus 66 ia~lp~~~~~~~~~-~~~~-~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~----- 132 (432) T protein:vir:10 66 VSKLPLKIYQEDEY-GIQR-GTKH------YLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKV----- 132 (432) T ss_pred hccCceEEEEecCC-ceee-cccc------HHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcE----- Confidence 99999988777755 3221 1223 355555532334455668999999999999999999864333321 Q ss_pred cchhhheecHHHhcc--C-------CCeeEEEC-CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhh Q lcl|Aclame:pro 155 PVPEWLALTPEEVRA--S-------EKKTIIEL-PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRT 224 (629) Q Consensus 155 ~~~eW~~vt~~eI~~--~-------~~~~~i~l-P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rt 224 (629) .+++.|..+.|.. . ........ ..|....| +..| ||++=++.|.....--||+.++...+.-.... T Consensus 133 --~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~-~~~e-iih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~ 208 (432) T protein:vir:10 133 --QALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVL-KPEE-ILHFKNGITLDGLVGVPTMEYLKSTLENSASA 208 (432) T ss_pred --EEEEEEcCceeEEEEcCcccccccceEEEEEecCCeEEEE-cccc-EEEecCCCCCCCcccccHHHHHHHHHHHHHHH Confidence 1233333333321 1 11111122 22222222 2223 55553445566666789998888877766666 Q ss_pred hHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceee Q lcl|Aclame:pro 225 TKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFA 304 (629) Q Consensus 225 tk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva 304 (629) .+...+..+.-..-.|||-+|+.++ ....+.+.+.|.+.- ...++.+. ++|+ T Consensus 209 ~~~~~~~~~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~~-~g~~n~~~-----~~vl 260 (432) T protein:vir:10 209 DKFINNFYKQGLQVKGLVQYVGDLN----------------------EDAKKVFRENFESMS-SGLQNSHR-----IALM 260 (432) T ss_pred HHHHHHHHhccCCccEEEEcCCCCC----------------------HHHHHHHHHHHHHHh-cccccCCc-----ceec Confidence 6666666555555567877766543 113344555554211 11222221 2222 Q ss_pred eechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHH Q lcl|Aclame:pro 305 AAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAI 384 (629) Q Consensus 305 ~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~al 384 (629) |+. -+++.|.+.. .+.--+++|+..+..||+.|.||| .+||...++|..++.+....-++..|.|.+..|+++| T Consensus 261 --~~g--~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVP~-~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~l 334 (432) T protein:vir:10 261 --PVG--YQFQPISLNM-SDAQFLENTELTIRQIATAFGIKM-HQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEM 334 (432) T ss_pred --CCC--ceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 332 2566665532 223347899999999999999999 7778777889999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHH Q lcl|Aclame:pro 385 TNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWAR 461 (629) Q Consensus 385 t~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~ 461 (629) ++.+|-+.--. ..|-|.||.+.|.. +|..+.+ ..+++.|++|.+++|+++|++.-.+=|- T Consensus 335 n~kLl~~~~~~-----~g~~~~fd~~~l~~-~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~----------- 397 (432) T protein:vir:10 335 TYKLFLDSELD-----KGFYSKFNVDAILR-ADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR----------- 397 (432) T ss_pred HHhhcChhhcC-----CCcEEEeechhhhc-CCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe----------- Confidence 99988653321 23557899999843 3444433 3488899999999999999974322220 Q ss_pred HHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 462 DRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 462 d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) -+++. ...+++. .......+.+...+..+ .-.|++ T Consensus 398 -------~~~~~------n~~~~~~--~~~~~~k~~~~~~~~~~--------~~~~~~ 432 (432) T protein:vir:10 398 -------LLVNG------NMLPIDM--AGQAYLKGGDTNGEVSK--------EGNEGN 432 (432) T ss_pred -------Eeecc------cccchhh--ccccccCCCCCCCCCCC--------CCCCCC Confidence 00000 0000000 00000011111111000 111111 No 16 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=99.70 E-value=7.9e-17 Score=108.86 Aligned_cols=413 Identities=12% Similarity=0.119 Sum_probs=219.4 Q ss_pred CCCCc-ce-eE-EcCCCCCCCcccceeeecccccCcccchhhhhccCCcc---cchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPTS-LR-IV-RRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTR---TDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t~-lr-~v-r~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~---~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) |.==+ ++ .. -..|.++. .+.++ .+...|-+-.+.+.. -+.+ ..| ..+.+.-.+.-+++. T Consensus 1 M~~~~r~~~~~~~~~r~~~~---~~~~~-------~~~~~~~~~~g~~~~~~~v~~~----~al-~~~~v~~~i~~ia~~ 65 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQ---VIELN-------KDDEKLLEWLGISPSTISVKGK----NAL-KVATVFACIKILSES 65 (432) T ss_pred CChHHHHHHhcCccccCccc---ccccC-------CchHHHHHHhCCCcCccccchh----hhh-ccHHHHHHHHHHHHh Confidence 32211 00 00 01111111 11111 111122111111110 0011 112 355666677788999 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +|++.+..-+-+++ |... ..++ .+..+.+.=----+-..++++.++.+|.+-|++|+.+.-...|.. T Consensus 66 ia~lp~~~~~~~~~-~~~~-~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~----- 132 (432) T protein:vir:10 66 VSKLPLKIYQEDEY-GIQR-GTKH------YLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKV----- 132 (432) T ss_pred hccCceEEEEecCC-ceee-cccc------HHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcE----- Confidence 99999988777755 3221 1223 355555532334455668999999999999999999864333321 Q ss_pred cchhhheecHHHhcc--C-------CCeeEEEC-CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhh Q lcl|Aclame:pro 155 PVPEWLALTPEEVRA--S-------EKKTIIEL-PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRT 224 (629) Q Consensus 155 ~~~eW~~vt~~eI~~--~-------~~~~~i~l-P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rt 224 (629) .+++.|..+.|.. . ........ ..|....| +..| ||++=++.|.....--||+.++...+.-.... T Consensus 133 --~~L~~i~~~~v~v~~d~~~~~~~~~~~~y~~~~~g~~~~~-~~~e-iih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~ 208 (432) T protein:vir:10 133 --QALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVL-KPEE-ILHFKNGITLDGLVGVPTMEYLKSTLENSASA 208 (432) T ss_pred --EEEEEEcCceeEEEEcCcccccccceEEEEEecCCeEEEE-cccc-EEEecCCCCCCCcccccHHHHHHHHHHHHHHH Confidence 1233333333321 1 11111122 22222222 2223 55553445566666789998888877766666 Q ss_pred hHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceee Q lcl|Aclame:pro 225 TKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFA 304 (629) Q Consensus 225 tk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva 304 (629) .+...+..+.-..-.|||-+|+.++ ....+.+.+.|.+.- ...++.+. ++|+ T Consensus 209 ~~~~~~~~~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~~-~g~~n~~~-----~~vl 260 (432) T protein:vir:10 209 DKFINNFYKQGLQVKGLVQYVGDLN----------------------EDAKKVFRENFESMS-SGLQNSHR-----IALM 260 (432) T ss_pred HHHHHHHHhccCCccEEEEcCCCCC----------------------HHHHHHHHHHHHHHh-cccccCCc-----ceec Confidence 6666666555555567877766543 113344555554211 11222221 2222 Q ss_pred eechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHH Q lcl|Aclame:pro 305 AAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAI 384 (629) Q Consensus 305 ~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~al 384 (629) |+. -+++.|.+.. .+.--+++|+..+..||+.|.||| .+||...++|..++.+....-++..|.|.+..|+++| T Consensus 261 --~~g--~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVP~-~~lg~~~~~~~s~~e~~~~~~~~~~l~P~~~~ie~~l 334 (432) T protein:vir:10 261 --PVG--YQFQPISLNM-SDAQFLENTELTIRQIATAFGIKM-HQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEM 334 (432) T ss_pred --CCC--ceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 332 2566665532 223347899999999999999999 7778777889999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHH Q lcl|Aclame:pro 385 TNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWAR 461 (629) Q Consensus 385 t~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~ 461 (629) ++.+|-+.--. ..|-|.||.+.|.. +|..+.+ ..+++.|++|.+++|+++|++.-.+=|- T Consensus 335 n~kLl~~~~~~-----~g~~~~fd~~~l~~-~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~----------- 397 (432) T protein:vir:10 335 TYKLFLDSELD-----KGFYSKFNVDAILR-ADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR----------- 397 (432) T ss_pred HHhhcChhhcC-----CCcEEEeechhhhc-CCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe----------- Confidence 99988653321 23557899999843 3444433 3488899999999999999974322220 Q ss_pred HHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 462 DRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 462 d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) -+++. ...+++. .......+.+...+..+ .-.|++ T Consensus 398 -------~~~~~------n~~~~~~--~~~~~~k~~~~~~~~~~--------~~~~~~ 432 (432) T protein:vir:10 398 -------LLVNG------NMLPIDM--AGQAYLKGGDTNGEVSK--------EGNEGN 432 (432) T ss_pred -------Eeecc------cccchhh--ccccccCCCCCCCCCCC--------CCCCCC Confidence 00000 0000000 00000011111111000 111111 No 17 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=99.70 E-value=4.8e-17 Score=110.07 Aligned_cols=410 Identities=12% Similarity=0.133 Sum_probs=219.9 Q ss_pred CCCCcceeE---EcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHH-HHHhhcchhhhhhhhhhhcee Q lcl|Aclame:pro 1 MAPTSLRIV---RRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAW-KAYDAVGELRYYVGWRSSSAS 76 (629) Q Consensus 1 ma~t~lr~v---r~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW-~~~d~VgELryyvgWr~~s~S 76 (629) |.==. |+. +|.+ +.+..+..+...|..-.+.+ .+.+.- -. ..| ..+-++-.+.-++++|| T Consensus 1 M~~~~-~~f~~~~r~~------------~~~~~~~~~~~~~~~~~g~~-~~~~~v-~~~~al-~~~~v~~~i~~ia~~ia 64 (429) T protein:vir:10 1 MDSVK-KFFNFEKRQT------------SQVIELNKDDEKLLEWLGIS-PSTISV-KGKNAL-KVATVFACIKILSESVS 64 (429) T ss_pred Cchhh-hhhcccccCc------------ccccccCCChHHHHHHhcCC-CCccee-chhhhh-ccHHHHHHHHHHHHhhc Confidence 32110 111 1211 11111222222222211111 111100 00 122 35566777888999999 Q ss_pred eeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHH-HhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCccc Q lcl|Aclame:pro 77 RVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVN-QIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNP 155 (629) Q Consensus 77 r~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~-~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~ 155 (629) ++.+..=+-+.+ |... ..++ .+..+.. ..-.+.. ..++++.+..+|-+-|++||.+.--..|.. T Consensus 65 ~l~~~~~~~~~~-~~~~-~~~~------~l~~lL~~~PN~~~t-~~~f~~~~~~~lll~Gnay~~i~r~~~G~~------ 129 (429) T protein:vir:10 65 KLPLKIYQEDEY-GIQR-GTKH------YLNNLLRLRPNPYMS-SMNFFGSLEAQKNLYGNSYANIEFDRKGKV------ 129 (429) T ss_pred cCceEEEEecCC-ceee-cccc------HHHHHHHhhccCCCC-HHHHHHHHHHHHhhcCCeEEEEEECCCCcE------ Confidence 999988666644 4321 1222 3555554 3444444 457999999999999999999863333321 Q ss_pred chhhheecHHHhcc--C-------CCee-EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhh Q lcl|Aclame:pro 156 VPEWLALTPEEVRA--S-------EKKT-IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTT 225 (629) Q Consensus 156 ~~eW~~vt~~eI~~--~-------~~~~-~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rtt 225 (629) .+++.+..+.|.. . ..+. .+.-..|...+|. .+-||++=.+.+..-..-.||+..+...+.-..... T Consensus 130 -~~L~~i~~~~v~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~ 206 (429) T protein:vir:10 130 -QALWPIDASKVTVYIDDVGLLNSKTKMWYVVNTGGQQRVLK--PEEILHFKNGITLDGLVGVPTMEYLKSTLENSASAD 206 (429) T ss_pred -EEEEEEcCceeEEEEcCcccccccceEEEEEccCCeEEEEc--cccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHH Confidence 1233333332321 1 1111 1222333333332 223566534455555567789888888777776666 Q ss_pred HHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeee Q lcl|Aclame:pro 226 KTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAA 305 (629) Q Consensus 226 k~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~ 305 (629) +...+..+.-..-.|||-+|+.++ ....+++++.|.+.- ...++.+. ++|+ T Consensus 207 ~~~~~~~~ng~~~~~il~~~~~l~----------------------~e~~~~~~~~~~~~~-~g~~n~~~-----~~vl- 257 (429) T protein:vir:10 207 KFINNFYKQGLQVKGLVQYVGDLN----------------------EDAKKVFRENFESMS-SGLQNSHR-----IALM- 257 (429) T ss_pred HHHHHHHhccCCccEEEEcCCCCC----------------------HHHHHHHHHHHHHHh-ccccccCc-----eeec- Confidence 666666555555567777765543 123455666554221 12222222 2222 Q ss_pred echHHhcCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHH Q lcl|Aclame:pro 306 APGELIKNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAI 384 (629) Q Consensus 306 vP~E~i~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~al 384 (629) ++. -+++-|.+ ...+.. +++|+..+..||+.|.||| .+||...++|+.++.+....-++..|.|.+..|+++| T Consensus 258 -~~g--~~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVP~-~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l 331 (429) T protein:vir:10 258 -PVG--YQFQPISL--NMSDAQFLENTELTIRQIATAFGIKM-HQLNDLSKATLNNIEQQQQQFYTDTLQATLTMYEQEM 331 (429) T ss_pred -CCC--ceEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 332 14555554 333333 7899999999999999999 6777777899999999999999999999999999999 Q ss_pred HHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHH Q lcl|Aclame:pro 385 TNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWAR 461 (629) Q Consensus 385 t~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~ 461 (629) ++.+|-+.-- ...|.|.||.+.|.. +|..+.+ ..++..|++|.+++|+++|++.-.+=|- T Consensus 332 n~kl~~~~~~-----~~g~~~~fd~~~ll~-~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~----------- 394 (429) T protein:vir:10 332 TYKLFLDSEL-----DKGFYSKFNVDAILR-ADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR----------- 394 (429) T ss_pred HHhhcChhhc-----CCCcEEEeechhhhc-CCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe----------- Confidence 9988855321 134668899999843 3444333 4488999999999999999975422220 Q ss_pred HHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccc Q lcl|Aclame:pro 462 DRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSD 526 (629) Q Consensus 462 d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~ 526 (629) -+++ ....+++.- ......+.+. +.+.+.+.+.. . T Consensus 395 -------~~~~------~n~~~~d~~--~~~~~k~g~~-----------~~~~~~~~~e~----~ 429 (429) T protein:vir:10 395 -------LLVN------GNMLPIDMA--GQAYLKGGDT-----------NGEVSKEGNEG----N 429 (429) T ss_pred -------eeec------ccccchhhc--cccccCCCCC-----------CCCCCCCCCCC----C Confidence 0000 000001100 0000001111 11111111111 0 No 18 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=99.69 E-value=2.1e-16 Score=106.56 Aligned_cols=439 Identities=11% Similarity=0.074 Sum_probs=218.8 Q ss_pred cceeEEcCCCCCCCcccceeeec-cccc-CcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEE Q lcl|Aclame:pro 5 SLRIVRRPKSEPVSTRQRALVAA-SQPV-ENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIA 82 (629) Q Consensus 5 ~lr~vr~pk~~~~~~r~r~l~aA-sa~~-~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~a 82 (629) -.=..|+-|.+....+ .+..+ ...+ ..-+..|..++..+..-+. ..| + .++-+.-.|.=++++||.+-+.. T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~-~~a---l-~~~~V~~~v~~Ia~~iA~lp~~~ 73 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGR--DVREAGWTSLFQAVAEPFAGAWQQGVKADP-EAV---L-SFHAVFACISLISQDIAKMRLRL 73 (454) T ss_pred CCCccccCcccccccc--cccchhhhhhhhhhhhhhcchhhcCcccCh-HHh---h-ccHHHHHHHHHHHHhhccCceEE Confidence 2222334333333221 11111 1111 0000011111111100000 111 1 24456667788999999998888 Q ss_pred EeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhhee Q lcl|Aclame:pro 83 SAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLAL 162 (629) Q Consensus 83 seiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~v 162 (629) =+.+.|+.... +.+ .-+..+-...-- -+-..++++.++.+|.+-|++|+.++-...|. ..+++.| T Consensus 74 ~~~~~~g~~~~--~~~-----~~~~~L~~~PN~-~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~-------~~~L~~i 138 (454) T protein:vir:93 74 MQTDAQGIRRE--TRR-----GDIARLCRRPNA-QQNRIQFFELWLNAKLRHGNTVVLKIRNARGQ-------IKELRIL 138 (454) T ss_pred EEeccCCccch--hhh-----HHHHHHHhcCCC-CCCHHHHHHHHHHHHhhcCceEEEEEECCCCc-------EEEEEEE Confidence 77776622211 111 123333333332 34566899999999999999999887433332 1234445 Q ss_pred cHHHhcc--CC-CeeEEEC-CCCCC---CcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhH Q lcl|Aclame:pro 163 TPEEVRA--SE-KKTIIEL-PTGDK---HEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSR 235 (629) Q Consensus 163 t~~eI~~--~~-~~~~i~l-P~g~~---h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SR 235 (629) ..+.|+. .. +.+..+. +...- ..+.-..|-||++=...+..-..--||+..+...+.-..-..+...+..+.- T Consensus 139 ~~~~v~v~~~~~g~~~y~~~~~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng 218 (454) T protein:vir:93 139 DWNRVEPLVADDGEVFYRITPDRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNG 218 (454) T ss_pred cCcceEEEEcCCCcEEEEEEeccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 5554431 11 2222111 11110 0111122335555223333444566887777766654444444444444444 Q ss_pred hhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCce Q lcl|Aclame:pro 236 LIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVT 315 (629) Q Consensus 236 L~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ik 315 (629) ..-.|||-+|+.++ ....+.+.+.|-+.-. + .+.++ ++|+ ++. -+++ T Consensus 219 ~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~~~-g-~n~g~-----~~vl--~~g--~~~~ 265 (454) T protein:vir:93 219 GRPSGVIEIPGSIT----------------------EENAKKLKSNWDSGYT-G-ENAGK-----TAIL--SNG--AKYN 265 (454) T ss_pred CCccEEEecCCCCC----------------------HHHHHHHHHHHHHHhc-c-cccCC-----ceec--cCC--ceEE Confidence 44457777776543 1234456555543221 1 22222 2333 222 2556 Q ss_pred eEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 316 HLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMR 395 (629) Q Consensus 316 hL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~ 395 (629) .|.+... +.--+++|+..+..||..|.||| .+||.+.++|.+++.+....-++..|.|.+..|+++|++.++.+ T Consensus 266 ~l~~~~~-d~q~le~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L~~~---- 339 (454) T protein:vir:93 266 PTTFSPV-DSQTVEQLKMTAEIVCSVFRVPA-YKIGVGQPPSSDNVEALEQQYYSQCLQTLIESIELLLDEALETG---- 339 (454) T ss_pred EcccChh-HHHHHHHHHHHHHHHHHHhCCCH-HHcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---- Confidence 6665332 23347899999999999999999 67888778999999999999999999999999999999877643 Q ss_pred cCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhh Q lcl|Aclame:pro 396 EGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP 472 (629) Q Consensus 396 eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~ 472 (629) ..|.|+||.+.|.. .|..+.+ ..+++.|++|.+++|+++|++.-.+=|- + +++ T Consensus 340 -----~~~~~~f~~~~ll~-~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~-------------~-----~~~ 395 (454) T protein:vir:93 340 -----ENESTEFDVTTLLR-MDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA-------------L-----YLQ 395 (454) T ss_pred -----CCcEEEeechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe-------------e-----eec Confidence 34668999999843 4544444 3488999999999999999975322221 0 011 Q ss_pred h-hhhh--cccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHH Q lcl|Aclame:pro 473 T-LAVL--IPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFR 544 (629) Q Consensus 473 ~-l~pl--l~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~R 544 (629) . ..|+ ++.....+-|.+. .++.. + .+++.++.|......+.. .....+.-+.++.. T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~----~~~~~---------~-~~~~~~~~d~~~~~~e~~--~d~~~~~~~~~~~~ 454 (454) T protein:vir:93 396 QQNYSLEALSRRDAREDPFAS----SGKTA---------S-VPQAVAASDGNKAITETE--HDAVKAMFRGILKK 454 (454) T ss_pred cCccchHhhhccCcccCCCCC----CccCC---------C-CCCCCCCCCCCCCccCCc--cchhhhhhhhhhcC Confidence 0 0111 0111110000000 00000 0 111112212111001100 11122233333332 No 19 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=99.68 E-value=6.1e-17 Score=109.49 Aligned_cols=412 Identities=14% Similarity=0.095 Sum_probs=216.9 Q ss_pred ceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEEEee Q lcl|Aclame:pro 6 LRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIASAI 85 (629) Q Consensus 6 lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~asei 85 (629) .-+...=|+.+...+ . ....+... .+-.++..+..-.+ +..+ .++.++-.+.=+++++|.+.+..=+. T Consensus 1 m~~~~~~~~~~~~~~-~----~~~~~~~~--~~~~~~~~g~~v~~----~~al-~~~~v~~~i~~ia~~ia~lp~~~~~~ 68 (419) T protein:vir:57 1 MFIPQFWKGRPSENR-V----NWQVVPGG--MRSSSSQAGVIITP----ETAL-ALSAVRACVTLLAESVAQLPCVLYRR 68 (419) T ss_pred CcchhhhccCCcccc-c----cccccccc--cccccccCCceech----HHhh-ccHHHHHHHHHHHHhhccCceEEEEE Confidence 223332222222111 0 00001000 00000000000011 1122 24567777888999999999998888 Q ss_pred cCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHH Q lcl|Aclame:pro 86 DPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPE 165 (629) Q Consensus 86 D~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~ 165 (629) +.+++... ..++ .+..+.+.=.---+-..++++.+..+|.+-|++|+.|.-...|. + .+++.|..+ T Consensus 69 ~~~g~~~~-~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~------~-~~L~pl~~~ 134 (419) T protein:vir:57 69 TENGGREI-AFDH------PLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGD------I-TELIPINPH 134 (419) T ss_pred cCCCceec-cccc------hHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc------E-EEEEEEcCc Confidence 87744332 1122 35555543233445556799999999999999999886333332 1 123333333 Q ss_pred Hhc--cCCCe-eEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCcee Q lcl|Aclame:pro 166 EVR--ASEKK-TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV 242 (629) Q Consensus 166 eI~--~~~~~-~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvl 242 (629) -|. ...++ .....+.+. ..| .. +-||++=+++ .....--||+.++...+.-.....+...+..+.-..-.||| T Consensus 135 ~v~v~~~~~g~~~y~~~~~~-~~~-~~-~~vih~r~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil 210 (419) T protein:vir:57 135 KVIVLKGPDGMPYYDIPSIG-EIL-PM-RMVHHIKSFS-LDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVI 210 (419) T ss_pred ceEEEECCCceEEEEEcCCc-eEE-ch-hhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEE Confidence 333 22222 223333221 222 22 3344443332 22344568888777766655555555444444444445777 Q ss_pred eecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCc Q lcl|Aclame:pro 243 FVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQ 322 (629) Q Consensus 243 fvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~d 322 (629) .+|..+. . .......+.|.+.+.+ ++.-.+. +.-++|+ ++. -+++.|.+ . T Consensus 211 ~~~~~~~--~----------------~~~~e~~~~~~~~~~~----~~~g~~n--ag~~~vl--~~g--~~~~~l~~--~ 260 (419) T protein:vir:57 211 ERPFEAK--A----------------IASQAAVDAILAKWTE----RYGGVRN--AFSVGML--QEG--MTYKQLSQ--D 260 (419) T ss_pred EecCcCC--c----------------ccCHHHHHHHHHHHHH----Hhccccc--cccceec--CCC--ceEEEcCC--C Confidence 7665443 0 1122345566666653 3322221 2233333 222 24444543 3 Q ss_pred hhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChh Q lcl|Aclame:pro 323 VTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPN 401 (629) Q Consensus 323 vte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~ 401 (629) ..+. -+++|+..+..||..|.||| .+||...++|..++-+....-++.-|.|.++.|.++|++.+|.+.. . . T Consensus 261 ~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~---~---~ 333 (419) T protein:vir:57 261 NEKAQLLQSRQYTVNEVCRLYKVPP-HMIQDLQKSTNNNIEHQGLQYVIYTMLAILKRHESAMMRDLLLPSE---R---R 333 (419) T ss_pred hhhHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc---c---C Confidence 3333 47899999999999999999 6677767788888888888888999999999999999999987633 1 2 Q ss_pred heEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhc Q lcl|Aclame:pro 402 AYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLI 478 (629) Q Consensus 402 ~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll 478 (629) .|.|.||.+.|.. +|..+.+ ..+++.|++|.+++|.++|++.-.+=|. =++| + T Consensus 334 ~~~i~fd~~~ll~-~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~------------------~~~~----~- 389 (419) T protein:vir:57 334 DFYIEFNVSSLLR-GDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDK------------------YLTP----L- 389 (419) T ss_pred CeEEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe------------------eeec----c- Confidence 5889999999843 4554443 3478999999999999999974322121 0000 0 Q ss_pred ccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCch Q lcl|Aclame:pro 479 PELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSR 533 (629) Q Consensus 479 ~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~ 533 (629) ......+......+.. ++.|+++..- . ..+ T Consensus 390 ---n~~~~~~~~~~~~~~~-------------~~~~~~~~~~-------~--~~~ 419 (419) T protein:vir:57 390 ---NMVDSKALTGIGKATP-------------QQLKDIEAIL-------C--TRN 419 (419) T ss_pred ---ccccccccccccCCCc-------------ccCcchhhhh-------h--ccC Confidence 0000000000000000 1111111100 0 000 No 20 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=99.68 E-value=2.9e-16 Score=105.80 Aligned_cols=518 Identities=13% Similarity=0.068 Sum_probs=252.4 Q ss_pred CCCCcceeEEcCCCCCCCc---ccceeeeccc-----ccCcccchhhhhccCCcc----cchhHHHHHHHh--------- Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVST---RQRALVAASQ-----PVENPGKAFRKAMGSSTR----TDWQEDAWKAYD--------- 59 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~---r~r~l~aAsa-----~~~~~~~~~kk~~~~~~~----~~WQ~eAW~~~d--------- 59 (629) +-|.- --.-|-|+-|--. --|+|.=-|. -+=.-.+++||.++...= ..|-.+-|.+-. T Consensus 27 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsl 105 (945) T protein:vir:10 27 IKANV-DSLSRGKDYPGFKPLLTYRALAWNSTVVYSIIIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSI 105 (945) T ss_pred chhch-hhhhcccCCCCcchhhhhhhhhccceeeeeeeeehhhhHHHhhcccccccccccchhhhhhhccCccceecccc Confidence 11100 0011122222100 1122221111 122223344444433331 114443333211 Q ss_pred -----------------hcchhhhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhh--- Q lcl|Aclame:pro 60 -----------------AVGELRYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALG--- 119 (629) Q Consensus 60 -----------------~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lG--- 119 (629) ...-+.-.+.-+++++|.+.+-.-+-+.|+..+-..... .....+..+.+..---..+ T Consensus 106 s~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~--~~~hpL~~LL~rPNp~mT~~eF 183 (945) T protein:vir:10 106 SDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRI--RDARNILEFLERPDPYFSEVNS 183 (945) T ss_pred cCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCccccccccc--ccchHHHHHHhCCCcccChhHH Confidence 011233456668999999998887777664333221111 1112455566543322333 Q ss_pred HHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhc--cC--CCeeE-EECC-CCCCCcccCCCceE Q lcl|Aclame:pro 120 QAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVR--AS--EKKTI-IELP-TGDKHEFRDGLDGM 193 (629) Q Consensus 120 QaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~--~~--~~~~~-i~lP-~g~~h~~~~~~D~~ 193 (629) -..+++.+..++-+-|..|+.+.--..|. + .+++.+.++.|. .. ++... .... +|.........|.+ T Consensus 184 wqsFl~~Lv~dLLL~GNAYieIiRd~~G~------i-i~L~pLdPs~Vti~~ddDG~~~y~Yv~~idG~~~~~v~a~DvI 256 (945) T protein:vir:10 184 WEYLLGMVLDDILTIDRGAIVKIRDEQGN------L-VAITPVDGTTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVV 256 (945) T ss_pred HHHHHHHHHHHHhhcCCeEEEEEECCCCc------E-EEEEEECCcceEEEEcCCCcEEEEEEEecCCceEEEecCCceE Confidence 24599999999999999999886323332 1 134455554443 11 21111 1222 22222223455667 Q ss_pred EEEeCCCccccc--CCccchhhhHHHHHHHHhhhHHHHHHH-HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccC Q lcl|Aclame:pro 194 FRVWNPRARRAR--EPDSPVRANLDSLKEIVRTTKTIANAS-KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPIL 270 (629) Q Consensus 194 ~RvW~P~Prra~--eaDSPVRa~ld~LrEI~rttk~I~naa-~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~ 270 (629) +++.+|++.--. .--||+.++...+.--....+.-.+.. ++..+-.|||-++.+...... .+... T Consensus 257 lhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILsvkg~~~~d~k------------~~~~L 324 (945) T protein:vir:10 257 LFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGD------------IYPQL 324 (945) T ss_pred EEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecCccccccc------------ccccc Confidence 778888775433 345888888776655555544444433 455666788888877653211 00111 Q ss_pred CchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhh Q lcl|Aclame:pro 271 GTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLL 350 (629) Q Consensus 271 ~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LL 350 (629) ...+.+.+.+.+. .++.-. .+-.|+|+ ++. -+++.|..... +.--+++|+..+..||..|.||| .+| T Consensus 325 seEq~erlKe~we----e~~sG~---NnG~piVL--deG--mef~pLs~s~~-DaQfLEsrkfs~eeIArAFGVPP-~lL 391 (945) T protein:vir:10 325 SREQLESIQRQLQ----AIMMGD---YTQVPILS--GGK--FTWIDFKGKRR-DMQFKELAEFVARKICAVYQVSP-QDV 391 (945) T ss_pred CHHHHHHHHHHHH----HHhCCc---ccccceec--CCC--ceEEEccCChh-HHHHHHHHHHHHHHHHHHhCCCH-HHc Confidence 2234445555543 222211 12346654 222 35566655332 22347999999999999999999 777 Q ss_pred ccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCC Q lcl|Aclame:pro 351 GLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGA 430 (629) Q Consensus 351 Glg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~ 430 (629) |.++++|..++.+....-++-.|.|.+..|+++|++.++... +...|-|.||...+..--++.+....+++.|+ T Consensus 392 G~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~------eg~~i~fdFd~ldl~D~ksraEal~kli~sGi 465 (945) T protein:vir:10 392 GILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR------NEKDIKLWFKEDDLEKERDWWNIIQGQLNTGF 465 (945) T ss_pred ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cCceeEEEecchhccCHHHHHHHHHHHHhCCC Confidence 988899999999999999999999999999999997654321 12457888998887533233333355789999 Q ss_pred CCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhh--hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCC Q lcl|Aclame:pro 431 ITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP--TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGA 508 (629) Q Consensus 431 it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~--~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~ 508 (629) +|.+++|++.|++.-.+=|. -+++ .+.|.-.. ......+.|+. .+....++ .+ T Consensus 466 LTiNEvRe~lGLpPIeGGD~------------------lli~~nn~~P~d~~-----~ka~~ga~p~q-~aq~~~dq-p~ 520 (945) T protein:vir:10 466 RSINEARMEKGLEPVPWGDV------------------PFSGLRNWKPEDEQ-----AKAQQGAMPPQ-LAQAMADQ-PS 520 (945) T ss_pred cCHHHHHHHhCCCCCCCcce------------------eeeccccccccccc-----cccccCCCCcc-cccCCCCC-CC Confidence 99999999999975433221 0111 01111100 00000011110 00000010 01 Q ss_pred CCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHHHhcccchHhhhhhcCCCChhHHHHHHh- Q lcl|Aclame:pro 509 SRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPYELRQLSDRELVRRLEPVRREHVADLIR- 587 (629) Q Consensus 509 ~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~ar~r~ip~h~~hr~~~pv~~~~v~rLi~- 587 (629) +.+.+.+++++.+ .+.+.++ ...-+.+..+|=+.|- +.+..||+ T Consensus 521 ~kGGe~dEns~~p-sE~kda~-----~e~~~~l~~~~~~~a~-----------------------------e~i~~~~e~ 565 (945) T protein:vir:10 521 QQGGGVDENSSVP-SEQKNAG-----LEVLRNLFKSLDANAS-----------------------------ENLKQVIEL 565 (945) T ss_pred CCCCCCCCCCCCC-CcccchH-----HHHHHHHHHHHHHHHH-----------------------------HHHHHHHhh Confidence 1111112111111 1111111 1111223332222221 12222221 Q ss_pred -hhhhhhhH-----HHHHHhCCCHHHHHHHHHHHHHHHHhh--hhccccC Q lcl|Aclame:pro 588 -GWDSMLEE-----RAVQALNMNIPGIRAAVKRAVYGELTK--TIDGEVS 629 (629) Q Consensus 588 -Gwd~~ld~-----~~~a~lG~D~~~lr~~v~~~v~~~lt~--~vd~~v~ 629 (629) |-|..+.. .++..-|+| -|.+-+.. .-|-||| T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 605 (945) T protein:vir:10 566 TNDDNYLKEKELLTRVLKSVGLD----------SVSEFIENNSQTDVEVS 605 (945) T ss_pred cCCCchhHHHHHHHHHHHHhhhH----------HHHHHHhcCCccceeec Confidence 22222211 344445555 33344443 3566666 No 21 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=99.68 E-value=3.3e-17 Score=110.93 Aligned_cols=409 Identities=15% Similarity=0.134 Sum_probs=209.7 Q ss_pred ceeEEc-CCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEEEe Q lcl|Aclame:pro 6 LRIVRR-PKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIASA 84 (629) Q Consensus 6 lr~vr~-pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~ase 84 (629) .++.|+ ++... +.-...+.+++-.. +..+. |-. +..+ .++-+.-.|.-+++.+|++.|..-+ T Consensus 1 m~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~g~----~~~--~~Al-~~~~V~~cv~~ia~~iA~lp~~~~~ 63 (417) T protein:vir:38 1 MKLFRGLATEVD--------PHWADHLLDSGVIP--SFRGG----YLG--ISAL-RNSDVLTAVSIVSGDVSRFPLVITD 63 (417) T ss_pred CccccccccCCC--------ccchhhhccccccc--ccCCc----eec--hhhc-ccHHHHHHHHHHHHhhccCeeEEEE Confidence 233322 00000 00111111221111 11111 110 1122 3555666778899999999998866 Q ss_pred ecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecH Q lcl|Aclame:pro 85 IDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTP 164 (629) Q Consensus 85 iD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~ 164 (629) -+.| +.+++. .+..++..-----+-..++++.+..+|-+-|++|+.|+-...+. .+ ..+..+.. T Consensus 64 ~~~~-----~~~~~~-----~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~-----~~-~~l~~l~p 127 (417) T protein:vir:38 64 SSTD-----EVIDLA-----NIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITN-----EP-AMFEFYAP 127 (417) T ss_pred cCCc-----ceeccc-----hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCC-----EE-EEEEEeCC Confidence 5544 233321 34455544333445567799999999999999999886322221 11 12333333 Q ss_pred HHhc--cC-CCee--EEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhh Q lcl|Aclame:pro 165 EEVR--AS-EKKT--IIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIG 238 (629) Q Consensus 165 ~eI~--~~-~~~~--~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~g 238 (629) +.+. .. .+.. .+..+.|...+.....|++ ||.-..+ -..--||+.++...+.=-.-..+...+..+.=... T Consensus 128 ~~v~v~~~~~~~~~y~~~~~~~~~~~~~~~~dviH~r~~~~d---~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p 204 (417) T protein:vir:38 128 SQTQVDTSDPDNIIYRFTPYNSSMQKVCGFEDVIHWKFFSYD---TIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKG 204 (417) T ss_pred ceEEEEEcCCCeEEEEEEEcCCcEEEEecCcceEEecCCCCC---CccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCC Confidence 3222 11 1222 2444555554433445554 5532212 23455777666655443333333333333333444 Q ss_pred CceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEE Q lcl|Aclame:pro 239 NGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLK 318 (629) Q Consensus 239 nGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~ 318 (629) .|||-.|+.++ ....+++.+.|.+. +.-.+ +--|+|+. + -.+++.|. T Consensus 205 ~~il~~~~~l~----------------------~e~~~~~~~~~~~~----~~g~n---~g~~~vl~--~--g~~~~~l~ 251 (417) T protein:vir:38 205 SIIKAKESRLS----------------------AEARQKIREDFERA----QAGAD---AGSPIIVD--A--TMDYQPLE 251 (417) T ss_pred cEEEEeCCCCC----------------------HHHHHHHHHHHHHH----hcccc---cCCceecc--C--CceEEEcc Confidence 45554443332 23455566655422 22222 22455543 2 23677776 Q ss_pred eCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 319 FDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGI 398 (629) Q Consensus 319 f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~ 398 (629) +..+-.+ -+++|+-.+..||..|.||| .+|| ...+..++-++...-++..|.|.++.|+++|++.+|.+.. . T Consensus 252 ~~~~d~q-~le~~~~~~~~Ia~~fgVPp-~~lg--~~~~~s~~e~~~~~~~~~tl~P~~~~ie~~l~~~Ll~~~~---~- 323 (417) T protein:vir:38 252 VDTNVLN-LINSNNYSTAQIAKALRVPA-YRLA--QNSPNQSVKQLADDYIRNDLPFYFEPITSEFELKLLDDAQ---R- 323 (417) T ss_pred CCHHHHH-HHHHHHhhHHHHHHHhCCCH-HHhC--CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhh---c- Confidence 6543333 37899999999999999999 5567 3556788889999999999999999999999999987632 1 Q ss_pred ChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhh-hhhh Q lcl|Aclame:pro 399 DPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPT-LAVL 477 (629) Q Consensus 399 d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~-l~pl 477 (629) .+|.|.||++.|..- ...+-..+++.|++|.+++|+++|++.-.+.|.. + -+++. +.| T Consensus 324 --~~~~~~fd~~~l~~~--~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d--~--------------~~~~~n~~~- 382 (417) T protein:vir:38 324 --HQYCIGFDTKSVNGL--PIADVNTAVNGGLWTGNEGRAELGKKPLKDPNMD--R--------------IQSTLNTVF- 382 (417) T ss_pred --ccceEEechhhhhHH--HHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCC--e--------------eeecccccc- Confidence 357788999887421 1222355889999999999999999754333210 0 00000 001 Q ss_pred cccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCC Q lcl|Aclame:pro 478 IPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQAS 529 (629) Q Consensus 478 l~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~ 529 (629) ++.......+ +....-+.+.+ .+++++.++++.. + T Consensus 383 ~d~~~~~~~~--~~~~~kgg~~~-------~~~~~~~~~~~~~--------~ 417 (417) T protein:vir:38 383 LDQKEAYQAE--HAAELKGGDTN-------AKGNQNGSGTNAN--------S 417 (417) T ss_pred cccccccccc--cccccCCCCCC-------CCCCCcCCCCcCC--------C Confidence 0111111100 00000011100 1111122222211 1 No 22 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=99.67 E-value=1.1e-16 Score=108.06 Aligned_cols=422 Identities=13% Similarity=0.130 Sum_probs=216.7 Q ss_pred CCCCcceeEEcCCCCCCCcccceeee-cccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVA-ASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~a-Asa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |+=+--|++-+=++.+.+ ++.+ ....+......|+..+.++.-..=..--.+-.=.++-+.-.+.-+++++|.+. T Consensus 1 ~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp 76 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRS----SLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLP 76 (434) T ss_pred Cccchhhhhhhcccccch----hhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCc Confidence 554444433332221111 1111 01111111112222221111000000000011124455667888999999999 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..=+.+.|++... ..++ .+..+...=-..-+-..++++.++.+|-+-|++|+.| .++.|+. .++ T Consensus 77 ~~~~~~~~~g~~~~-~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i-~~~~G~~-------~~L 141 (434) T protein:vir:43 77 LGVYERKADGSRVD-ARSF------PLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEI-RRAAGRP-------AAL 141 (434) T ss_pred eEEEEEcCCCcccc-cccc------HHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEE-EeCCCcE-------EEE Confidence 88878787743322 1222 3555555434555667789999999999999999775 4554432 124 Q ss_pred heecHHHhc--cCCC-ee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 160 LALTPEEVR--ASEK-KT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 160 ~~vt~~eI~--~~~~-~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) +.|-++.|. ...+ .. .+...+|...+|. ..| ||++=.+ +-+-..--||+..+.+.+.-..-..+...+..+. T Consensus 142 ~~l~p~~v~~~~~~~g~~~y~~~~~~g~~~~~~-~~e-Vih~~~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~n 218 (434) T protein:vir:43 142 DFLLPSRVDLECDENGRLKYFYTTKKGARREIE-RTN-MLHIPAF-TLDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKN 218 (434) T ss_pred EEEcCcceEEEEcCCCeEEEEEEecCceEEEEc-ccc-EEEecCc-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 444444443 2222 11 2344555544443 233 4443122 2223445688877776666555555555544444 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) -..-.|||-+|+.++ ..+.+.|.+.+-+ +.- ..-+--++|+ ++. -++ T Consensus 219 g~~~~gil~~~~~l~----------------------~e~~~~~r~~~~~-----~~g--~~nag~~~vl--~~g--~~~ 265 (434) T protein:vir:43 219 GLLPTVAFKVDRILQ----------------------PAQREEFREYVKS-----VSG--AMNSGRSPVL--EQG--ITP 265 (434) T ss_pred cCCcceEEecCCCCC----------------------HHHHHHHHHHHHH-----hcC--ccccCCcccc--CCC--ceE Confidence 444456776666554 1134445554422 111 1112223333 221 245 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchh--hHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHW--SAWQIGDEDVRLHILPPVEMLCEAITNQVLRTV 392 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nhw--sAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~ 392 (629) +.|.... .+.--+++|+..+..||..|.||| .|||.....+.| +.-+....-++..|.|.+..|+++|++.+|.+. T Consensus 266 ~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~ 343 (434) T protein:vir:43 266 ETIGINP-VDAQLLETREHGVIEICRWFGVPP-WMIGQTDKGSNWGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAP 343 (434) T ss_pred EEccCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChh Confidence 5554422 222238899999999999999999 677875555544 446777777888899999999999999877652 Q ss_pred HHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 393 LMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPN 469 (629) Q Consensus 393 Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~ 469 (629) - . ..|.|-||.+.|. +.|..+.+ ..+++.|++|.+++|++.|++.-.+=|. . T Consensus 344 ~----~--~~~~~~fd~~~ll-r~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~-------------~----- 398 (434) T protein:vir:43 344 E----R--IRYYAEFSLEGFL-KADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPGGDI-------------L----- 398 (434) T ss_pred h----h--cCceEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe-------------E----- Confidence 2 1 2578899999984 34544443 3488999999999999999985433221 0 Q ss_pred hhh-hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCc Q lcl|Aclame:pro 470 LLP-TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDD 524 (629) Q Consensus 470 Li~-~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~ 524 (629) +++ .++|+ +- ..+..+. .+..+.++...+.+...+ T Consensus 399 ~~~~n~~~~-------~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 399 TVQSNLVPI-------DQ--------LGQSNKS-----QAVRAALMNWFSQPEPQE 434 (434) T ss_pred eeccCccch-------hh--------hhccCCC-----cchhhhhhccCCCCCCCC Confidence 000 01111 00 0000000 000111111111110000 No 23 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=99.66 E-value=2e-16 Score=106.70 Aligned_cols=412 Identities=15% Similarity=0.133 Sum_probs=209.7 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.==+ |+-.+|. ..+....+.-.+..+-.....+..-.. ... +..++-++-.+.=+++++|++-| T Consensus 1 Mg~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~v~~~i~~ia~~ia~lp~ 65 (423) T protein:vir:81 1 MGFLQ-KLGLAPS----------VVATPEPIELVGPIFESLKLSTKNMTV-EQI---WEDQPHLRTVTTFIARNVASLQL 65 (423) T ss_pred CchhH-hhccccc----------cccCccccccccccccccccccchhhH-HHH---HHhhhHHHHHHHHHHHhHhhCce Confidence 32111 1111211 111111111000111000000000001 111 22456677778899999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCccc-c-cCcccchh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRL-D-SNGNPVPE 158 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~-d-~~~~~~~e 158 (629) ..=+.+.|++.... .+ + -+..+.+.. ---+-..++++.++.+|.+-|++|+.| .|+.+.. . ..-.+. . T Consensus 66 ~~~~~~~dg~~~~~--~~----~-~~~~ll~~P-N~~~t~~~f~~~~~~~l~l~Gna~~~i-~rd~~~~~~~~~l~p~-~ 135 (423) T protein:vir:81 66 QAFERVEDGGRERV--RE----G-HLARVCKLA-NSDMTMYDLLERTMFDLCLYDEFFWLL-PGDLGVDTPTLDIRPI-P 135 (423) T ss_pred EEEEEecCCceeee--cc----c-hHHHHhhcC-CCCCCHHHHHHHHHHHHhhcCCeEEEE-EecCCcCcceEEEeec-c Confidence 88888878554332 11 1 244455543 334567899999999999999999876 4543311 1 000111 0 Q ss_pred hheecHHHhccCCCeeEEEC-----CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 159 WLALTPEEVRASEKKTIIEL-----PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) Q Consensus 159 W~~vt~~eI~~~~~~~~i~l-----P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~ 233 (629) ...++....+...+...... .+|....| ...+ ||++=++++..-..--||+..+.+.+.=..-..+...+..+ T Consensus 136 ~~~v~~~~~~~~~~~~~Y~~~~~~~~~g~~~~~-~~~e-vih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ 213 (423) T protein:vir:81 136 VSWVQRRAYKDGWGSLDYIIIESGDNDGRSVKV-PGER-VIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWR 213 (423) T ss_pred cceeeeeeccCCCcceEEEEEEecCCCceEEEE-cccc-eEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 11111112222112111111 12222122 2223 44444666655555668766655544433333333333333 Q ss_pred hHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcC Q lcl|Aclame:pro 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) Q Consensus 234 SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ 313 (629) .-..-.|||.+++.+.= + -....+.+.+++-|. ..+.--.+-+. -|+|+ ++. -+ T Consensus 214 ng~~p~gvi~~~~~~~~------------~-----~l~~e~~~~~~~~~~----~~~~~~~~n~g-~~~vl--~~g--~~ 267 (423) T protein:vir:81 214 NGPRPGMVIMRDPESKA------------G-----KWDAESRTRFMANLR----ASFSPKSSDVG-GTLLL--EDG--MK 267 (423) T ss_pred ccCCCceEEEecCcccC------------c-----cCCHHHHHHHHHHHH----HHhccccccCC-cceec--CCC--ce Confidence 33333467777765431 0 011223333333332 22211111112 23333 222 25 Q ss_pred ceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 VTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) Q Consensus 314 ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~L 393 (629) ++-|.+.. .+.--+++|+-....||+.|.||| .|||...++|..+..+....=++..|.|.+..|+++|++.+|.+ T Consensus 268 ~~~l~~s~-~d~q~~e~~~~~~~eIa~~fgVPp-~~lg~~~~~t~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~L~~~-- 343 (423) T protein:vir:81 268 AENFHTTS-KDEQTVETTKLSLQTVAQVYGINP-TMVGQLDNANYSNVREFRKALYGDNLGSWIRIIQDVMNLFLLPR-- 343 (423) T ss_pred EEeccCCh-hhHHHHHHHHhhHHHHHHHhCCCH-HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-- Confidence 66666532 233456889999999999999999 77898778888888999988999999999999999999988765 Q ss_pred HhcCCChhheEeeecCcccccCCCchHHH--HH-HH-HcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 394 MREGIDPNAYVVWHDASQLTVDPDKTDEA--RD-AF-DRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPN 469 (629) Q Consensus 394 e~eG~d~~~yv~w~DaS~L~~~Pd~t~eA--~~-~~-~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~ 469 (629) .+++...|.|.||.+.|. ++|..+.+ .+ +. ..|++|.+++|++.|++...+=|- T Consensus 344 --~~~~~~~~~~~fd~~~ll-r~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p~~gGD~------------------- 401 (423) T protein:vir:81 344 --VGIDNEKFYFEFNLEEKL-RASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPSIDGGDD------------------- 401 (423) T ss_pred --cccccCccEEEecchhhh-ccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCCCCcce------------------- Confidence 355667789999999984 34444333 22 23 459999999999999975433221 Q ss_pred hhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC Q lcl|Aclame:pro 470 LLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDT 516 (629) Q Consensus 470 Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdT 516 (629) + -+|. + ..+++..+.. +.+.+| T Consensus 402 ~--------------~~p~--n-~~~~~~~~~~--------~~~~~t 423 (423) T protein:vir:81 402 L--------------ARPL--N-TEFGDSEDAP--------GEEVET 423 (423) T ss_pred e--------------eccc--c-cccCccCCCC--------CCCCCC Confidence 0 0010 0 0011111111 111112 No 24 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=99.66 E-value=9.1e-17 Score=108.52 Aligned_cols=405 Identities=13% Similarity=0.130 Sum_probs=220.1 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |-==+ |+.+|...++. +.|...+.-...+.....+..=-++.+-.++-+.-.+.-+++++|.+.+ T Consensus 1 Mg~f~-~lf~r~~~~~~--------------~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~ 65 (414) T protein:vir:44 1 MVFFS-GLFQRKSDAPV--------------TTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPC 65 (414) T ss_pred Cchhh-hhhccCccCcc--------------cchhhHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCce Confidence 43221 44444222111 1111110000000000000000122233455666677889999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+.+.+ |.... .++ .+..+...=-..-+-..++++.++.++-+-|++|+.+. |+.|.. . +.+ T Consensus 66 ~~~~~~~~-~~~~~-~~~------~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~-~~~g~~------~-~L~ 129 (414) T protein:vir:44 66 NLYHLNGS-LKQRA-TGE------RLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKV-KAFGEV------A-ELL 129 (414) T ss_pred EEEEecCC-ceeec-ccc------hHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEE-eCCCcE------E-EEE Confidence 88887754 33321 122 34555543334445666799999999999999998774 544432 1 122 Q ss_pred eecHHHh--ccCC-Ce--eEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 161 ALTPEEV--RASE-KK--TIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 161 ~vt~~eI--~~~~-~~--~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) .|.+.-| ...+ +. -.+..+.|...+|.. .|++ ||..+.+ -..--||+..+...+.-..-..+...+..+. T Consensus 130 ~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~~~-~evih~~~~~~d---~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~n 205 (414) T protein:vir:44 130 PVDPGCVVPKLNSSWEPVYQVTFPDGSTDVLSQ-EDIWHVRTLTLD---GLVGLNPIAYAREAISLAAATEEHGARLFSN 205 (414) T ss_pred EEcCceEEEEECCCCcEEEEEEecCceEEEEcc-ccEEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 3333322 2222 21 235556666555442 3433 5533322 2456778777776666555555555565555 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) -....|||-+|+.++ ....+.+++.|. ..+...+. +--|+|+ |+. -++ T Consensus 206 g~~p~gil~~~~~l~----------------------~e~~~~~~~~~~----~~~~g~~n--~~~~~vl--~~g--~~~ 253 (414) T protein:vir:44 206 GAVTSGVLRTEQTLS----------------------DQAYERLKKDFE----ERHTGLGN--AHRPMIL--EMG--LDW 253 (414) T ss_pred cCCCceEEEeCCCCC----------------------HHHHHHHHHHHH----HHhcCccc--cCcceec--CCC--ceE Confidence 566678877765443 123445555554 33332222 2224443 222 245 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) +.|.+.. .+.--+++|+-.+..||..|.||| .+||.+.++|+.++.+....-++..|.|.++.|+++|++.+|.+.- T Consensus 254 ~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgVpp-~~l~~~~~~t~~n~e~~~~~~~~~~l~P~~~~ie~~ln~~L~~~~~- 330 (414) T protein:vir:44 254 KSMALNA-EDSQFLETRKFQLEEICRLFRVPL-HMVQNTDRATFNNIEELGLGFINYSLVPYLTRIEQRINTGLVRKSK- 330 (414) T ss_pred EEccCCh-HHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc- Confidence 5555422 222347889999999999999999 7778777889999999999999999999999999999998876521 Q ss_pred hcCCChhheEeeecCcccccCCCchHH--H-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchh Q lcl|Aclame:pro 395 REGIDPNAYVVWHDASQLTVDPDKTDE--A-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) Q Consensus 395 ~eG~d~~~yv~w~DaS~L~~~Pd~t~e--A-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li 471 (629) . ..|.|.||.+.|.. +|..+. + ..++..|++|.+++|++.|++.-.+=|. - + T Consensus 331 ---~--~~~~i~fd~~~ll~-~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~-------~-----------~- 385 (414) T protein:vir:44 331 ---Q--GVFYAKFNAGALLR-GDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDV-------Y-----------L- 385 (414) T ss_pred ---c--CceEEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce-------e-----------c- Confidence 1 25678999999843 333333 3 3488999999999999999974322220 0 0 Q ss_pred hhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCC Q lcl|Aclame:pro 472 PTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQAS 529 (629) Q Consensus 472 ~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~ 529 (629) .|.-.+ ..+.+..+.. .+.++.+++.+. + T Consensus 386 --------------~~~n~~-~~~~~~~~~~-------~~~~~~~~d~~~-------~ 414 (414) T protein:vir:44 386 --------------TPMNMT-TKPSDGSKAG-------KQKDNANADETT-------S 414 (414) T ss_pred --------------cccccc-ccCCccccCC-------CCCCCCCCCCCC-------C Confidence 010000 0010000000 001111111110 0 No 25 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=99.65 E-value=3.9e-16 Score=105.06 Aligned_cols=438 Identities=17% Similarity=0.171 Sum_probs=218.3 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcc-cchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTR-TDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~-~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |.==+ |+..|++... +-.+.-....|....--..++... ...=+ .+-+=+++-+.-.|.-++++||.+. T Consensus 1 Mg~~~-~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~--~~~al~~~~v~~~i~~ia~~iA~lp 70 (457) T protein:vir:62 1 MGFWS-ALFGRGHSPA-------LDAAEGRAWEPYDPSIYNLGATASSGERVT--PHDALQVSAVFASVRLLSETIATLP 70 (457) T ss_pred Cchhh-hhhccccccc-------cccccccccccchhhhhhccccccCCceec--hHHhhccHHHHHHHHHHHHhHhhCc Confidence 54221 1112221110 000000000000000000000000 00000 0111124456667788899999998 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) |..=+-+.++.. .+++ .....+-+..-.. +-..++++.++.++.+-|++|+.|. +..+.. . +. T Consensus 71 ~~~~~~~~~~~~---~~~~-----~~~~~ll~~pn~~-~t~~~f~~~~~~~l~l~Gna~~~i~-~~~g~~------~-~l 133 (457) T protein:vir:62 71 LSTYSKRGGTRK---EIDT-----PEWLDFPNAEPGG-MGRIDILSQTVLSLLLQGNAFLAVR-WAGPNI------A-GL 133 (457) T ss_pred eEEEEecCCccc---cccc-----hHHHHhccccCCC-CCHHHHHHHHHHHHhhcCCeEEEEE-eCCCcE------E-EE Confidence 877665533222 1222 1344444444443 5688999999999999999998873 333321 1 12 Q ss_pred heecHHHhcc-----CC--Ce--eEEECCC-CCCCcccC-CCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHH Q lcl|Aclame:pro 160 LALTPEEVRA-----SE--KK--TIIELPT-GDKHEFRD-GLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTI 228 (629) Q Consensus 160 ~~vt~~eI~~-----~~--~~--~~i~lP~-g~~h~~~~-~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I 228 (629) +.|-++.|.. .+ .+ ....... |..+.... ..+-||++=.+++.....--||+.++.+.+.-..-..+.. T Consensus 134 ~~l~p~~v~v~~~~~~~~~~~~~~~y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~ 213 (457) T protein:vir:62 134 DVLDPTKIHVHMVMVDGLRRKVFEAYDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYG 213 (457) T ss_pred EEEcCcceEEEEeccCCccceeEEEEEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHH Confidence 2232222211 11 00 1122222 22222111 1223444434555444567788877777666555555666 Q ss_pred HHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeech Q lcl|Aclame:pro 229 ANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPG 308 (629) Q Consensus 229 ~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~ 308 (629) .+..+.-.+-.|||-+|+.++ ..+.+.+.+.|.+ .+.-.+.+ -=++|+ ++ T Consensus 214 ~~~f~ng~~p~gil~~~~~ls----------------------~e~~~~~~~~~~~----~~~G~~na--g~~~vl--~~ 263 (457) T protein:vir:62 214 AHFFRNGAMPGAVVEVPGTMS----------------------EEGLARAREAWRA----ANSGVDNA--HRVALL--TE 263 (457) T ss_pred HHHHhccCCcceEEEcCCCCC----------------------HHHHHHHHHHHHH----HhcCcccc--Ccceec--CC Confidence 666666566668888776544 1234556655543 22221111 112222 22 Q ss_pred HHhcCceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhccccCcchhhH--hHHhhhhhhhhhhhHHHHHHHHHH Q lcl|Aclame:pro 309 ELIKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSA--WQIGDEDVRLHILPPVEMLCEAIT 385 (629) Q Consensus 309 E~i~~ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsA--w~i~de~v~~hI~P~~~~i~~alt 385 (629) . -+++-|.+ ...+ --+++|+..+..||..|.||| .|||...++|.|++ -+..-.=++..|.|.++.|+++|+ T Consensus 264 g--~~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~~~sn~eq~~~~f~~~~l~P~~~~ie~~ln 338 (457) T protein:vir:62 264 G--AKFSKVAM--SPDEAQFLQTRQFQVPEIARIFGVPP-HLISDATNSTSWGSGLAEQNIAFTMFSLRPWLERIEAGFN 338 (457) T ss_pred C--ceEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 25555554 3333 238999999999999999999 67798777777653 555555567789999999999999 Q ss_pred HHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHH Q lcl|Aclame:pro 386 NQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARD 462 (629) Q Consensus 386 ~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d 462 (629) +.+|.+.- ...|.|+||.+.|. +.|..+.+ ..++..|++|.+++|++.|++.-.+. |- T Consensus 339 ~~L~~~~~------~~~~~i~fd~~~l~-~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g-------~~----- 399 (457) T protein:vir:62 339 RLLFAETA------DRFRFVKFNLDEIK-RGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG-------LG----- 399 (457) T ss_pred hhhcCccc------cCceEEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC-------Cc----- Confidence 98886522 23577899999984 33443333 45888999999999999999754332 00 Q ss_pred HHhcCcchhh-hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 463 RVGQDPNLLP-TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDS 525 (629) Q Consensus 463 ~v~~~P~Li~-~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~ 525 (629) |--++| .+.++-........|.++...++.++...+.+ .+..+..||.+....-+++ T Consensus 400 ----D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 457 (457) T protein:vir:62 400 ----EKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEE--PDNAEGDPDEGETEDDDDA 457 (457) T ss_pred ----ceeeeccccccccccccccccCCCccCCCCccCCCCCCC--CCCCCCCCccccccccccC Confidence 000111 11222112222222333322222222211211 1222333443322211111 No 26 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=99.65 E-value=2.2e-16 Score=106.40 Aligned_cols=423 Identities=14% Similarity=0.113 Sum_probs=223.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHH--HHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDA--WKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eA--W~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |=-+--|++-++|.+-- . +-..|+..+...|+.-+++... +..+. .+-+-..+-+.-.+.-+++++|++ T Consensus 1 ~~~~~~~~~~~~~~~~~-----~--~~g~~~s~~~~~~~~~~~~~~~--~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~l 71 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFL-----K--WLGVPISLTDGSFWSAWGGMGS--SSGETVTADSALQLSAVWSCVRLIAETIATL 71 (437) T ss_pred CCcchhhhhhhhHHhhh-----h--hcCCcccCCchhHHHhhccccc--CCCceechHhhhccHHHHHHHHHHHHHHhhC Confidence 44333344433322210 0 0011222111222111111111 10000 111123455666788899999999 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .|..=+.+.|++... ..++ .+..+.+.=--.-+-..++++.+..+|-+-|++|+.+. |+.|.. .+ T Consensus 72 p~~~~~~~~~g~~~~-~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~-r~~g~~-------~~ 136 (437) T protein:vir:10 72 PLNLYQTKPDGTRVL-AKQH------RLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKL-RSAGVL-------IG 136 (437) T ss_pred ceeEEEEcCCCceee-cccc------HHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEE-ecCCcE-------EE Confidence 998888887744332 1222 35555554344455677899999999999999998875 443421 12 Q ss_pred hheecHHHhc--cCC-Ce--eEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 159 WLALTPEEVR--ASE-KK--TIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 159 W~~vt~~eI~--~~~-~~--~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) ++.|-.+.|. ... +. -.+..+.|....| ...|++ ||..+.+ ...--||+.++...+.-..-..+...+.. T Consensus 137 L~~l~p~~v~i~~~~~g~~~y~~~~~~g~~~~~-~~~dIih~r~~~~d---~~~G~spi~~~~~~i~~~~~~~~~~~~~f 212 (437) T protein:vir:10 137 LELMLPQRTTVKRLTSGALQYTYRNVDGTVSTL-AEDDVFHVRGFSLD---GLMGLTPIQYAREVLGNSTAANKTSASVF 212 (437) T ss_pred EEEEcCcceEEEECCCCeEEEEEEecCceEEEE-ccccEEEecCcCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 4444444333 221 21 1234455554333 334433 4433222 24456888777776666556666666666 Q ss_pred HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhc Q lcl|Aclame:pro 233 KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIK 312 (629) Q Consensus 233 ~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~ 312 (629) +.-..-.|||-+|+.++ ....+++.+.|.+ .+.-.+ -+--|+|+. +. - T Consensus 213 ~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~----~~~g~~--nag~~~vl~--~g--~ 260 (437) T protein:vir:10 213 RNGLRPSGVLSTDQILQ----------------------KEKRAEIRTDLAE----QFGGAM--QAGKTMVLE--AG--M 260 (437) T ss_pred hccCCccEEEEcCCCCC----------------------HHHHHHHHHHHHH----HhcCcc--ccCcceecc--CC--c Confidence 66666677777665443 1233445554442 222111 122244443 21 2 Q ss_pred CceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchh--hHhHHhhhhhhhhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 NVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHW--SAWQIGDEDVRLHILPPVEMLCEAITNQVL 389 (629) Q Consensus 313 ~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~Nhw--sAw~i~de~v~~hI~P~~~~i~~alt~~~l 389 (629) +++-|.. ...+.. +++|+..++.||+.|.||| .|||...++|.| +..+....=++..|.|.+..|+++|++.+| T Consensus 261 ~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~kll 337 (437) T protein:vir:10 261 KYQAITM--NPGDVQLLETRAFNIEEICRWYRVPP-FMVGHSEKSTSWGTGIEQQTLGFLTFTLRPWLTRIEQAARRSLL 337 (437) T ss_pred eEEeccC--ChhhHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc Confidence 3444443 444443 8999999999999999999 677887666654 457888888899999999999999999998 Q ss_pred HHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 390 RTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQ 466 (629) Q Consensus 390 r~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~ 466 (629) .+.- . ..|.|=||.+.|. +.|..+.+ ..+++.|++|.+++|+++|++.-.+=|- .+-. T Consensus 338 ~~~e---~---~~~~~~fd~~~ll-~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~------------~~~~ 398 (437) T protein:vir:10 338 RPGE---R---DQFYAEFSVEGLL-RADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAA------------VLTV 398 (437) T ss_pred Cccc---c---CceEEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcc------------eEee Confidence 6622 1 2466778999874 34544433 3488999999999999999964322110 0000 Q ss_pred CcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcc Q lcl|Aclame:pro 467 DPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDS 525 (629) Q Consensus 467 ~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~ 525 (629) +-.+ .|+ +- .+++.+....++ +..+.+.+.|++.++++- T Consensus 399 ~~~~----~~~-------~~--------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~ 437 (437) T protein:vir:10 399 QSAL----LPI-------DK--------LGEHTTATAAQD-ALKAWLYQEEKTRATQER 437 (437) T ss_pred cCcc----cch-------hh--------ccCcCCCcchhc-cccccCCCCCCCCccccC Confidence 0001 110 00 000000000000 111222222222222111 No 27 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=99.64 E-value=1.6e-15 Score=101.76 Aligned_cols=397 Identities=16% Similarity=0.203 Sum_probs=213.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhc-cCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAM-GSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~-~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |.==+ |+.++++... +.+..+ -+..++..+.... ..+..+ .+ ..+-+.-.|.-++++||.+. T Consensus 1 Mgl~~-~~f~~~~~~~------~~~~~~-~~~~~~~~~~~~g~~v~~~~--------al-~~~~v~~~v~~ia~~iA~lp 63 (409) T protein:vir:84 1 MSLFT-RIFSGPSEER------TLTKIS-GIPSPAEDWAMHGDRPGANS--------AM-TLGAFYACVTLLADTVASLS 63 (409) T ss_pred Cchhh-hhhcCCCccc------cccccc-ccccccchhhccCcccchhh--------hh-ccHHHHHHHHHHHHhhhhCc Confidence 65433 5666654221 111111 1122222211000 001110 01 23345555677899999999 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..-+-+ |+++ +.+ ..+.++...=-.--+-..++++.++.++.+-|++|+.|..++.+- .+ .+. T Consensus 64 ~~~~~~~-~~~~----~~~-----~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g-----~~-~~L 127 (409) T protein:vir:84 64 IDAYRKK-DNVR----IPV-----SPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEAN-----RP-TAI 127 (409) T ss_pred eEEEEec-CCcc----ccc-----chHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCC-----ce-EEE Confidence 9887755 4332 222 134555544344556688999999999999999999887665431 11 112 Q ss_pred heecHHHhc----cCCCeeEEEC-CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 160 LALTPEEVR----ASEKKTIIEL-PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 160 ~~vt~~eI~----~~~~~~~i~l-P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) +.|..+-|. ..+.+..+.. -.+.-.+| .. +-||++=+..+..-..--||+..+.+.+.=..-..+...+..+. T Consensus 128 ~~l~p~~v~v~~~~~~~~~~~~~~~~~~g~~~-~~-~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~n 205 (409) T protein:vir:84 128 MPIHPDCIHVTDAKDEDGDWIEPVYRIDGKVV-PN-HRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRD 205 (409) T ss_pred EEEcCceeEEEEcCCCcceEEEEEecCCceEE-ch-hhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 233333222 1111111111 11111123 22 33555533444444467789888877766666566666655555 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) -..-.|||-+|+.++ ....+++.+.+++. +.. +--++|+ +++ .++ T Consensus 206 g~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~----~~n-----~g~~~vl--~~g--~~~ 250 (409) T protein:vir:84 206 SANPSGILSSDADLT----------------------PDQVKQTQKQWIQS----HHN-----RRLPAVM--SAG--IKW 250 (409) T ss_pred CCCccEEEecCCCCC----------------------HHHHHHHHHHHHHH----hcc-----CCCeeec--CCC--ceE Confidence 556667777766443 12345666666542 222 2234443 322 234 Q ss_pred eeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhh--HhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWS--AWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 315 khL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nhws--Aw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) +-+.+ ...+. -+++|+..+..||..|.||| .+||...++|-|+ ..+....=++..|.|.++.|+++|++.+ T Consensus 251 ~~~~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L--- 324 (409) T protein:vir:84 251 QSVSI--TPNESQFLETRSFQRSEIAMWFRIPP-HMIGDVEKSTSWGTGIEEQGINFVRHTLLPWLRCIEQALDTFL--- 324 (409) T ss_pred EEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc--- Confidence 44443 33333 38899999999999999999 5778655666544 4666666678889999999999999764 Q ss_pred HHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 392 VLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDP 468 (629) Q Consensus 392 ~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P 468 (629) +..|.|.||.++|.. +|..+.+ ..+++.|++|.+++|+++|++.-.+-|. T Consensus 325 --------~~g~~i~fd~~~l~~-~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~------------------ 377 (409) T protein:vir:84 325 --------PRGQFVKFNVDGLMR-GDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDI------------------ 377 (409) T ss_pred --------cCCCeEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce------------------ Confidence 124678999999844 4555554 4588899999999999999985533331 Q ss_pred chhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccc Q lcl|Aclame:pro 469 NLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSD 526 (629) Q Consensus 469 ~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~ 526 (629) -++|. ....++ ..++.+.. .+.+|+++. ++.. T Consensus 378 ~~~~~------n~~~~~------~~~~~~~~----------~~~~~~~~~----~gn~ 409 (409) T protein:vir:84 378 HLQPM------NFVPLG------YVPPEEPA----------QEPQPNSAT----EGNK 409 (409) T ss_pred eeecc------cccccc------cCCccccC----------cCCCCCCcc----CCCC Confidence 00000 000000 00111110 011111111 1111 No 28 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=99.64 E-value=3.3e-16 Score=105.49 Aligned_cols=395 Identities=13% Similarity=0.061 Sum_probs=218.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.==+ |+.+.++...+ +. .+++|. +-...++..- ..+ ..+ ..+-+.-.+.=+++++|.+.+ T Consensus 1 MG~~~-~~~~~~~~~~~---~~-------~~~~~~--~~~~~g~~~~-~~~----~al-~~~~V~~~v~~Ia~~iA~lp~ 61 (411) T protein:vir:81 1 MGWWS-RLTRFFRPRNE---TV-------DMTNPL--LLQWLGVDPD-TPR----NQL-SEATYFACLKILSESLGKLPL 61 (411) T ss_pred CchHH-HHHhhccCccc---cc-------ccchHH--HHHHhcCccc-Chh----hhh-ccHHHHHHHHHHHHhHhhCce Confidence 33211 12222211111 01 111221 1011111110 010 011 244566678889999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..=+.+.|+.... .++ .+..+.+.=----+...++++.+..+|.+-|++|+.+. |+.+... +-+ T Consensus 62 ~~~~~~~~~~~~~--~~~------~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~-r~~g~~~-------~l~ 125 (411) T protein:vir:81 62 KMYQKTERGIVKS--DRE------ELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQ-YSGPQLQ-------ALW 125 (411) T ss_pred eEEEecCCceeee--ccc------HHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEE-ecCCceE-------EEE Confidence 8888887633221 112 24455543333456788999999999999999998875 4443321 111 Q ss_pred eecHHHhc--cCC-------C--eeEEECCCCCCCcccCCCceEEEE-eCCCcccccCCccchhhhHHHHHHHHhhhHHH Q lcl|Aclame:pro 161 ALTPEEVR--ASE-------K--KTIIELPTGDKHEFRDGLDGMFRV-WNPRARRAREPDSPVRANLDSLKEIVRTTKTI 228 (629) Q Consensus 161 ~vt~~eI~--~~~-------~--~~~i~lP~g~~h~~~~~~D~~~Rv-W~P~Prra~eaDSPVRa~ld~LrEI~rttk~I 228 (629) .+.++.|. ..+ . ...+..|.+.+.......| ||++ +++ +..-..-.||+.++...+.-..-..+.. T Consensus 126 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~e-iih~k~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~ 203 (411) T protein:vir:81 126 ILPSQYVTIVVDDRGLLGEKNAIWYRYNDPYDGKMYVFRNDE-ILHFKTSV-TFDGITGLSVRDVLKHTVDGALESQKFM 203 (411) T ss_pred EECCceEEEEEcCcccccccceEEEEEEecCCceEEEEcccc-EEEEcCCC-CCCCcccccHHHHHHHHHHHHHHHHHHH Confidence 22222221 111 1 1123344333322223333 4444 332 2233457788888887777777666666 Q ss_pred HHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeech Q lcl|Aclame:pro 229 ANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPG 308 (629) Q Consensus 229 ~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~ 308 (629) .+..+.-.+-.|||-+|+.++ ....+++.+.|.+ .+.-.+.+-. ++|+ ++ T Consensus 204 ~~~f~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~----~~~g~~n~g~--~~vl--~~ 253 (411) T protein:vir:81 204 NNLYKTGLTGKAVLEYTGDLN----------------------QEARDRLVKGFEQ----FANGSKNAGK--IIPV--PL 253 (411) T ss_pred HHHHhccCCCceEEEeCCCCC----------------------HHHHHHHHHHHHH----HhcCccccCC--ceec--CC Confidence 666666666678887776544 1234556655543 2322222222 2332 22 Q ss_pred HHhcCceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 309 ELIKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQ 387 (629) Q Consensus 309 E~i~~ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~ 387 (629) . -+++-|.+ ...+ --+++|+.....||+.|.||| .+||...++|+.++.+....-++..|.|.++.|+++|++. T Consensus 254 g--~~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~~ 328 (411) T protein:vir:81 254 G--MKLVPLDI--KLTDSQFFELKKYTALQIAAAFGIKP-NQINDYEKSSYASAEAQNLAFYVDTLLYVLKQYEEEITYK 328 (411) T ss_pred C--ceEEEccC--CHHHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 2 24454544 3333 346889999999999999999 6778777899999999999999999999999999999999 Q ss_pred HHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 VLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRV 464 (629) Q Consensus 388 ~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v 464 (629) +|.+.... ..|-|.||.+.|. ++|..+.+ ..++..|++|.+++|+++|++-.++=|.- + + T Consensus 329 ll~~~~~~-----~~~~~~fd~~~ll-~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~----~-------~ 391 (411) T protein:vir:81 329 ILSNDLIS-----QGHYFKFNVNVIL-RADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNL----M-------A 391 (411) T ss_pred cCChhhcC-----CCcEEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCee----e-------e Confidence 98774422 3466889999984 34444433 45889999999999999999754322210 0 0 Q ss_pred hcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcC Q lcl|Aclame:pro 465 GQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEA 505 (629) Q Consensus 465 ~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~ 505 (629) .. .++|+ + . -++.....+|+ T Consensus 392 ~~------n~~pl-------~------~--~~~~~~kgGd~ 411 (411) T protein:vir:81 392 NG------NYIPL-------S------M--LGANYGKGGDS 411 (411) T ss_pred cc------Cccch-------h------h--hhhhhccCCCC Confidence 00 00110 0 0 00000011111 No 29 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=99.63 E-value=8.5e-16 Score=103.21 Aligned_cols=399 Identities=14% Similarity=0.113 Sum_probs=201.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.==.-| +..+-...++-..+.... .+..-... .|++ ++-+.-.+.-+++++|++.| T Consensus 1 m~~f~~~-----------------~~~~~~~~~~~~~~~~~~-~~~~~~~~-~Al~----~~~V~~~i~~Ia~~iA~lp~ 57 (406) T protein:vir:97 1 MSFFQPL-----------------GTSKVSYDDYISSVLAGD-VSQKYLGV-SALK----NSDILTATSIIAGDIARFPL 57 (406) T ss_pred Ccccccc-----------------CCCCCCcchHHHHHhcCC-CCcccccc-hhhc----cHHHHHHHHHHHHhhhhCee Confidence 2211100 011111111111110000 00000011 1211 33444457789999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) +.-+ .| | ....+ ..+..+.+.-----+-..++++.++.+|.+-|++||.+.--..+ + ...+++ T Consensus 58 ~~~~--~~-g----~~~~~----~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~-----g-~~~~L~ 120 (406) T protein:vir:97 58 VKKD--VN-G----DIIHD----EDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKT-----N-QALQFQ 120 (406) T ss_pred EEEe--cC-c----ccccc----chHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCC-----C-eEEEEE Confidence 7643 33 2 22211 12445554333455677899999999999999999987521111 1 112344 Q ss_pred eecHHHhcc--C-CCeeE--EECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 161 ALTPEEVRA--S-EKKTI--IELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 161 ~vt~~eI~~--~-~~~~~--i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) .+.++.|.. . ++.+. +..+.+.+..-....|++ ||.. +.+-..--||+.++.+.+.-..-..+...+ T Consensus 121 ~i~p~~v~v~~~~~~~~~y~~~~~~~~~~~~~~~~evih~r~~---~~dg~~G~spi~~~~~~i~~~~a~~~~~~~---- 193 (406) T protein:vir:97 121 FYRPSETTVEETDNHEIVYTFTDMLTAKQVKCFAHDVIHWKFF---SHDTILGRSPLLSLGDEIDLQTGGINTLIK---- 193 (406) T ss_pred EECCCeeEEEEcCCceEEEEEEecCCceEEEEccccEEEecCC---CCCCcccccHHHHHHHHHHHHHHHHHHHHH---- Confidence 454444431 1 22222 222333332222334444 4432 222234567776665555433333333333 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) +..||. .|..+..+.. .......+.+++.|.+ .+...+ + --|+|+ + .-.++ T Consensus 194 -~f~ng~--~~~~i~~~~~---------------~l~~e~~~~~~~~~~~----~~~g~n--~-g~~~vl--~--~g~~~ 244 (406) T protein:vir:97 194 -FFKDGF--SSGILTMKGA---------------QLSGDARQRARQEFEK----MREGSV--G-GSPLVF--D--STMEY 244 (406) T ss_pred -HHhccC--CCceEEecCC---------------CCCHHHHHHHHHHHHH----Hhcccc--c-Cceeec--C--CCceE Confidence 344553 2332222110 1123345566666542 333221 1 123333 2 23466 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) +.|.+..+..+ -+++|+..+..||..|.||| .+||. ..+..+..+...+=++..|.|.+..|.++|++.+|.+.- T Consensus 245 ~~l~~~~~d~q-~le~~~~~~~~Ia~afgVPp-~~lg~--~~~~~~~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~- 319 (406) T protein:vir:97 245 TPLEIDTNVLQ-LITSNNFSTAQIAKALRVPS-YKLGV--NSPNQSVAQLMEDYVTNDLPFYFDAITSELGLKTLNDKD- 319 (406) T ss_pred EEccCCHHHHH-HHHHHHhhHHHHHHHhCCCH-HHcCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcChhh- Confidence 77776544333 36899999999999999999 67785 334456778877777888999999999999998875522 Q ss_pred hcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhh Q lcl|Aclame:pro 395 REGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTL 474 (629) Q Consensus 395 ~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l 474 (629) . ..|.|-||.+.+... +.++...+++.|++|.+++|.++|++...+++-+..- + T Consensus 320 ---~--~~~~i~fd~~~~~~~--~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~----------------~--- 373 (406) T protein:vir:97 320 ---R--RLYHIEFDTRSVTGR--NVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQ----------------S--- 373 (406) T ss_pred ---c--cceeEEEecCccchh--hHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEe----------------e--- Confidence 1 347788898865432 2455567899999999999999999865444321110 0 Q ss_pred hhhcccccCccCCCCCCCCCCCCCC-CCCCcCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 475 AVLIPELADVEFPTPTVALPPAEEQ-DGDEEASGASRREEPDTEDDAG 521 (629) Q Consensus 475 ~pll~~~~~~~~p~p~~a~~p~~~~-~~~~e~~~~~~~~ePdTe~d~~ 521 (629) | -.. -|.+.. +..+...++..|.|-..|+|.. T Consensus 374 ------------~--~n~-~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 374 ------------S--LNY-VFLDKKEEYQDKVGIKGKGGEVNAEEDKS 406 (406) T ss_pred ------------c--cCc-cchhcccccccccccccCCCCCCCCCCCC Confidence 0 000 001110 1111112222333333333321 No 30 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=99.63 E-value=7.2e-16 Score=103.59 Aligned_cols=407 Identities=12% Similarity=0.143 Sum_probs=208.2 Q ss_pred CCCC-cceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHH-------------HHHHhhcchhhh Q lcl|Aclame:pro 1 MAPT-SLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDA-------------WKAYDAVGELRY 66 (629) Q Consensus 1 ma~t-~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eA-------------W~~~d~VgELry 66 (629) |-+- -+=+.- |.+++.....|+...+..+ + +.. +|..+. ++-+-..+-+.- T Consensus 1 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~ 65 (432) T protein:vir:10 1 MPDEKKLGLLG---------QLKAMFVPPDPVDIGGGQT---F--TPV-NATARDLGIIISDTGAAVNADAIMRLDAVAA 65 (432) T ss_pred CCCCcccchhh---------hhHhhcCCccccccccccc---c--ccC-cchhhhhcccccccCcccchhhhhcchHHHH Confidence 1110 000000 1112222222211111000 0 000 011000 111223455666 Q ss_pred hhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCC Q lcl|Aclame:pro 67 YVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDK 146 (629) Q Consensus 67 yvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~ 146 (629) .+.=+++++|++.+..=+-+.|+... .++++ +..+...=--.-+-..++++.++.++-+=|++|+.+.- .. T Consensus 66 ~i~~Ia~~ia~lp~~~y~~~~~g~~~--~~~~~------l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~-~~ 136 (432) T protein:vir:10 66 CVKLVSQAIAAMPLTMYMRTPDGRKE--AVNHP------LYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVV-TD 136 (432) T ss_pred HHHHHHHhhhhCceeEEEecCCCccc--ccccH------HHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEe-cC Confidence 78889999999999887777773222 12332 44444433344567788999999999999999988754 33 Q ss_pred cccccCcccchhhheecHHHhc--cCCC-eeE--EECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHH Q lcl|Aclame:pro 147 SRLDSNGNPVPEWLALTPEEVR--ASEK-KTI--IELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEI 221 (629) Q Consensus 147 ~~~d~~~~~~~eW~~vt~~eI~--~~~~-~~~--i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI 221 (629) |.. .+.+.|-.+.|. ...+ ... +...+|...+| ...| |+++=+ ++.....--||+..+.+.+.-- T Consensus 137 g~~-------~~L~~l~~~~v~v~~~~~g~~~y~~~~~~g~~~~~-~~~~-iih~~~-~~~dg~~G~spi~~~~~~i~~~ 206 (432) T protein:vir:10 137 GRI-------ESLQYLANDRLTITTDTKGNTAYRYRRTDGQMIDI-PKQQ-IWKIMG-YSLDGENGLSAIRYGAQIFGTA 206 (432) T ss_pred CcE-------EEEEEEcCCceEEEEcCCCcEEEEEEecCceEEEE-cCcc-EEEecC-CCCCCcccccHHHHHHHHHHHH Confidence 321 123333333332 2221 121 22334433222 2233 444422 2223344568888777666555 Q ss_pred HhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccc Q lcl|Aclame:pro 222 VRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIP 301 (629) Q Consensus 222 ~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vP 301 (629) ....+...+..+.-....|||-+|+.++ ....+.|.+-+.. ..+.+. + T Consensus 207 ~~~~~~~~~~f~ng~~~~gil~~~~~l~----------------------~e~~~~~~~~~~~-----~~nag~-----~ 254 (432) T protein:vir:10 207 IAAEAQAARAFRNGQLQSVYYQIDRFLT----------------------DDQYDSFAKKVSG-----SVEAGR-----A 254 (432) T ss_pred HHHHHHHHHHHhcCCCcceEEecCCCCC----------------------HHHHHHHHHHHhh-----hhhCCC-----c Confidence 5555555555555555667777776544 1234556555432 111111 2 Q ss_pred eeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccC---cchhhHhHHhhhhhhhhhhhHHH Q lcl|Aclame:pro 302 MFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSN---SNHWSAWQIGDEDVRLHILPPVE 378 (629) Q Consensus 302 Iva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~---~NhwsAw~i~de~v~~hI~P~~~ 378 (629) +|+ ++. -+++-|.+..+-. --+++|+..+..||..|.||| .|||.... ++..+.-++.-.=++..|.|.+. T Consensus 255 ~vl--~~g--~~~~~l~~~~~d~-q~le~~~~~~~~Ia~afgVPp-~~lg~~~~~t~~~~sn~e~~~~~f~~~tl~P~~~ 328 (432) T protein:vir:10 255 PLL--EGG--MDVKSLGLNPVDA-QLLQSRQYSVESICRFFGVPP-SMIGHSSAGTTSWGSGIESQQLGFLSMTLSPWLR 328 (432) T ss_pred eec--CCC--ceEEEccCChHHH-HHHHHHHHHHHHHHHHhCCCH-HHcCCccCCcccccchHHHHHHHHHHHHHHHHHH Confidence 333 322 2556666543322 237899999999999999999 77786432 22344566666777788999999 Q ss_pred HHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHH Q lcl|Aclame:pro 379 MLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEG 455 (629) Q Consensus 379 ~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg 455 (629) .|+++|++.+|.+.- + ..|.|-||.+.|. +.|..+.+ ..++..|++|.+++|+++||+.-.+=|- T Consensus 329 ~ie~~ln~kL~~~~~---~---~~~~~~fd~~~ll-~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~----- 396 (432) T protein:vir:10 329 RIEQSIALNLLSPAE---R---RRYFADFDTSALL-RADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAA----- 396 (432) T ss_pred HHHHHHHhhhcCccc---c---CceEEEeechhhh-ccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcc----- Confidence 999999999987632 2 3588899999984 33444333 3488999999999999999964322110 Q ss_pred HHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCC Q lcl|Aclame:pro 456 WAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGAS 509 (629) Q Consensus 456 ~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~ 509 (629) .+..+-.++ |+ ..++. +..+.|...++.+++++... T Consensus 397 -------~~~~~~~~~----pl-~~~~~------~~~~~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 397 -------VLTVQSAMV----PL-DSIGL------QASPEPASGLGNQQQDKVSK 432 (432) T ss_pred -------eEeecCccc----ch-hhhcc------cCCCCCCCCCCCcccccccC Confidence 000000000 10 00010 11111111111111110000 No 31 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=99.62 E-value=3.6e-16 Score=105.24 Aligned_cols=411 Identities=12% Similarity=0.071 Sum_probs=216.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhH--HHHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQE--DAWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~--eAW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |==. |..-+-++... +- ...-+. ..| +...+.+.. -....+ .++-+.-.|.=+++++|.+ T Consensus 1 m~~~--~~~~~~~~~~~-~~------~~~~~~---~~~-----g~~~s~~~~~v~~~~al-~~~~v~~cv~~ia~~ia~l 62 (419) T protein:vir:80 1 MFFS--RQLLSNLGQTQ-PG------SGGWVS---ALL-----GSARSEAGQVVTPASAL-SLTVLQNCVTLLAESIAQL 62 (419) T ss_pred CCcc--cccccccCcCC-CC------cchhhH---Hhh-----cccccccCcccChHHhh-ccHHHHHHHHHHHHhhccC Confidence 2211 10000000000 00 000000 000 000110000 000122 3555666788899999999 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .|..=+.+.|+..+- .++ .+..+...-----+-..++++.++.+|-+-|++|+.+.--..|. ..+ T Consensus 63 p~~~~~~~~~~~~~~--~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~-------~~~ 127 (419) T protein:vir:80 63 PVELYERSGDDRKPA--TDH------PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGV-------IQG 127 (419) T ss_pred ceEEEEecCCCcccc--ccc------HHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc-------EEE Confidence 998888887732211 112 35566654444455667999999999999999999875322232 123 Q ss_pred hheecHHHhc--cCCC-eeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhH Q lcl|Aclame:pro 159 WLALTPEEVR--ASEK-KTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSR 235 (629) Q Consensus 159 W~~vt~~eI~--~~~~-~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SR 235 (629) ++.+..+.|. ..++ .....+ .|.. .....++++.=+++ ..-..--||+..+...+.-.....+...+..+.- T Consensus 128 L~~i~~~~v~i~~~~~~~~~y~~-~~~~--~~~~~~i~h~~~~~--~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng 202 (419) T protein:vir:80 128 LYPLDNEAVTVMKGPDLKPMYRV-AGAD--PLPQRLVHHVRWMS--INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNG 202 (419) T ss_pred EEEecCceEEEEECCCceEEEEE-cCcc--ccchhheEEecCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 4444444443 2222 222222 1111 11223333222443 3345567887777776665555555555555666 Q ss_pred hhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCce Q lcl|Aclame:pro 236 LIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVT 315 (629) Q Consensus 236 L~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ik 315 (629) ..-.|||.+|..+. . . ......+.|.+.+- ..+...+.+ --++|+ ++. .+++ T Consensus 203 ~~~~gil~~~~~~~--~-----------~-----~~~~~~~~~~~~~~----~~~~g~~n~--g~~~vl--~~g--~~~~ 254 (419) T protein:vir:80 203 TALSGVIERPTDAP--A-----------L-----KDQASVDRITDGWN----AKFGGSGNA--KKVALL--QEG--MKFK 254 (419) T ss_pred CCccEEEEecCCCC--c-----------c-----cCHHHHHHHHHHHH----HHhcCcccc--CCceec--CCC--ceEE Confidence 66677877766543 0 0 01224455665555 233322222 112222 332 3566 Q ss_pred eEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 316 HLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMR 395 (629) Q Consensus 316 hL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~ 395 (629) .|.+. -.+---+++|+..+..||..|.||| .|||...++|..++-+....-++..|.|.+..|+++|++.+|-+.. T Consensus 255 ~l~~s-~~d~q~~e~~~~~~~~Ia~~fgVPp-~llg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~l~~kll~~~~-- 330 (419) T protein:vir:80 255 PLSMT-NVDAALIDALRLSALDIARIYKIPA-HMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE-- 330 (419) T ss_pred eccCC-hhhHHHHHHHHHHHHHHHHHhCCCH-HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc-- Confidence 66653 2334457899999999999999999 7778777888888888888888999999999999999998886532 Q ss_pred cCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhh Q lcl|Aclame:pro 396 EGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP 472 (629) Q Consensus 396 eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~ 472 (629) + ..|.|.||.+.|.. +|..+.+ ..+++.|++|.+++|++.|++.-.+=|. - ++ T Consensus 331 -~---~~~~i~fd~~~l~~-~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~-------~-----------~~- 386 (419) T protein:vir:80 331 -R---KQYFIEYNLAGLLR-GDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI-------Y-----------LS- 386 (419) T ss_pred -c---CCeEEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce-------e-----------ee- Confidence 1 25889999999843 3444333 3488899999999999999974322121 0 00 Q ss_pred hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHH Q lcl|Aclame:pro 473 TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALE 547 (629) Q Consensus 473 ~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALe 547 (629) | ....+.....+. ..+..-++++. ++.+ .|.|. T Consensus 387 --------------~--~n~~~~~~~~~~-------~~~~~~~~~~~------------------~~~~-~~~l~ 419 (419) T protein:vir:80 387 --------------P--MNMVDASKPQPI-------PMGKTEPTKAA------------------LDEI-GRILS 419 (419) T ss_pred --------------c--cccccccccccc-------cCCCCCchhhh------------------HHHH-HhhcC Confidence 0 000000000000 00000011100 0000 11111 No 32 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=99.62 E-value=1.2e-15 Score=102.32 Aligned_cols=405 Identities=10% Similarity=0.067 Sum_probs=228.4 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccc--hhHHHHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTD--WQEDAWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~--WQ~eAW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |.==+ |+..|.+.. +..| +-......++.....|+...+...... .. .| + ..+-+.-.+.=+++++|++ T Consensus 1 MG~f~-~lf~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~-~a---l-~~~~v~~ci~~ia~~iA~l 71 (422) T protein:vir:13 1 MGFLR-GLFNKKNNN-DEKR--SNYDEDIGIDISDSNFWEKFGIKLNFSVRGK-RA---L-KENTVYVCTKIRAESIGKL 71 (422) T ss_pred Cchhh-hhhhccCCc-cchh--hhhhhccccccCcchhhhhccccCCcccchh-hh---h-ccHHHHHHHHHHHHhhhhC Confidence 55221 333332322 2222 111112222222233333322211100 00 11 1 2344555677789999999 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .|..-+-. + ...++ .+..+...=----+-..++++.++.+|.+-|++|+.+.--..|+ ..+ T Consensus 72 p~~~~~~~-~-----~~~~~------~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~-------~~~ 132 (422) T protein:vir:13 72 SLKIYKDK-E-----EYKEH------ELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGK-------IIG 132 (422) T ss_pred ceEEEecC-c-----ccccc------hHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc-------EEE Confidence 88764411 1 01122 24444443222334456999999999999999999885333332 123 Q ss_pred hheecHHHhccC--C-------Ce--eEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHH Q lcl|Aclame:pro 159 WLALTPEEVRAS--E-------KK--TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKT 227 (629) Q Consensus 159 W~~vt~~eI~~~--~-------~~--~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~ 227 (629) ++.|.++.|... . ++ ..+..+.|...+|. .|-||++-.+++..-..-.||+..+.+.+.-.....+. T Consensus 133 L~~i~~~~v~~~~~~~~~~~~~~~~~y~~~~~~g~~~~~~--~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~ 210 (422) T protein:vir:13 133 LYPINSDNVTKIIDDDNFLSSLSKVWYVVTDKNGKEHKLL--PDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEF 210 (422) T ss_pred EEEECCcceEEEEcCCcceeccceEEEEEEeCCCeEEEEc--ccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHH Confidence 444444444421 1 11 23444555554433 34466666666666667789999999888877777777 Q ss_pred HHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeec Q lcl|Aclame:pro 228 IANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAP 307 (629) Q Consensus 228 I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP 307 (629) ..+..+.-..-.|||-+|+.++ ....+.+.+.|.+. +.-.+.+- -++|+ + T Consensus 211 ~~~~f~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~----~~g~~n~~--~~~vl--~ 260 (422) T protein:vir:13 211 INKFFKNGLSIKGIVQYVGDLD----------------------EKAKKIFKKEFESM----SNGLENAH--SISLL--P 260 (422) T ss_pred HHHHHhccCCccEEEEeCCCCC----------------------HHHHHHHHHHHHHH----hcCccccC--Cceec--C Confidence 7777777677788988887654 12344555555522 22212211 12222 2 Q ss_pred hHHhcCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 308 GELIKNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITN 386 (629) Q Consensus 308 ~E~i~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~ 386 (629) +. -+++-|.+ ...+.. +++|+..+..||..|.||| .+||...++|+.+..+....-++..|.|.++.|+++|++ T Consensus 261 ~g--~~~~~l~~--~~~d~q~le~~~~~~~~Ia~~fgVpp-~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~ 335 (422) T protein:vir:13 261 FG--YQFQPISL--SMADAQFLENSKLTKRELAATFGMKS-YHLNDLERATFNNLTEQQKDFYVTTLQSSLTVYEQEIQD 335 (422) T ss_pred CC--ceeeeccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22 24444544 333333 7899999999999999999 777765688999999998888999999999999999999 Q ss_pred HHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHH Q lcl|Aclame:pro 387 QVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDR 463 (629) Q Consensus 387 ~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~ 463 (629) .+|.+.- .. ..|-|.||.+.|.. +|..+.+ ..+++.|++|.+++|+++|++.-.+=|- T Consensus 336 ~Ll~~~~----~~-~g~~i~fd~~~l~r-~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~------------- 396 (422) T protein:vir:13 336 KLFSQYE----TL-QDVKAEFNVDTILR-SDIKTRYEAYRIGIQGGFIEANEARRRENLPPVEGGDR------------- 396 (422) T ss_pred hhCChhh----hc-CCceEEeechhhhc-CCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe------------- Confidence 9887531 11 24778999999853 3433333 4489999999999999999986533331 Q ss_pred HhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 464 VGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 464 v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) .-.+. .++| .+..+.... .+.+.|.+ T Consensus 397 ~~~~~----n~~~-------------------l~~~~~~~~-~~g~~~g~ 422 (422) T protein:vir:13 397 LLVNG----NMIP-------------------IEMAGEQYK-KGGEKGGK 422 (422) T ss_pred eeecc----Cccc-------------------hhhcccccc-cCCCcCCC Confidence 00000 0011 111100000 11111111 No 33 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=99.62 E-value=9.9e-16 Score=102.84 Aligned_cols=398 Identities=15% Similarity=0.123 Sum_probs=213.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.==+. .++.+..+.. +..+. ....|.. .........-.+.+ + ..+-++-.+.-+++.||++.+ T Consensus 1 Mg~f~~--~~~~~~~~~~---~~~~~-------~~~~~~~-~~~~~~~~~~~~~~--~-~~~~v~~~i~~ia~~ia~~~~ 64 (406) T protein:vir:95 1 MGLFDR--WRRTKRKSKI---RADTG-------YVGLFMS-GEDVSFLVPGYVRL--S-DNPEVRMAVHKIADLISSMTI 64 (406) T ss_pred Ccchhh--hccccccccc---cccch-------hhhhhcc-CcccCccccCHHHH--h-hcHHHHHHHHHHHHhhccCce Confidence 443321 2232222221 11111 1111100 00000001111222 2 467778888999999999999 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEE-EEcC-CcccccCcccchh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAI-LFTD-KSRLDSNGNPVPE 158 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~i-l~r~-~~~~d~~~~~~~e 158 (629) .+-+.+.++-+. +.+ ........=.---+...++++.++.++-+-|++++.+ +.|+ .+.. .+ T Consensus 65 ~~~~~~~~~~~~---~~~------~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~-------~~ 128 (406) T protein:vir:95 65 YLMQNTEDGDIR---IRN------ELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLI-------DE 128 (406) T ss_pred EEEEecCCccee---ecc------hHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcE-------EE Confidence 998888663221 222 1222232223334556799999999998888875543 2332 2221 11 Q ss_pred hheecHHHhc--cCCCeeEEECCCCCCCcccCCCceEEEE-eCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhH Q lcl|Aclame:pro 159 WLALTPEEVR--ASEKKTIIELPTGDKHEFRDGLDGMFRV-WNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSR 235 (629) Q Consensus 159 W~~vt~~eI~--~~~~~~~i~lP~g~~h~~~~~~D~~~Rv-W~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SR 235 (629) .+.|.++-|. ...++..+.. +.+ +|. .+-||++ .++++.+...--||+..+.+.+.-.....+...+..+.- T Consensus 129 l~~i~~~~v~~~~~~~~~~~~~--~~~-~~~--~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng 203 (406) T protein:vir:95 129 LVPLTPSKVNFLDTPDGYQVLY--GGQ-TFN--YDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGK 203 (406) T ss_pred EEEEcCceeEEEEcCCeEEEEe--ccE-EEc--hhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 2223332222 2222211110 111 121 2335554 577887777788999999998888888888888888888 Q ss_pred hhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCce Q lcl|Aclame:pro 236 LIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVT 315 (629) Q Consensus 236 L~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ik 315 (629) ....|||-+|+.++ ....+.+.+-+. ..+. ++--+--++|+...++....++ T Consensus 204 ~~~~~il~~~~~l~----------------------~e~~~~~~~~~~----~~~~--g~~n~~~~~v~~~~~~~~~~~~ 255 (406) T protein:vir:95 204 YMPSLIVKVDAATA----------------------ELSSEEGRNAVF----KKYL--QATEAGQPWIIPAELLEVEQVK 255 (406) T ss_pred CCcceEEEeCCCCC----------------------HHHHHHHHHHHH----HHhc--cccccCCceeecCCCccccccc Confidence 88889988887655 112233333332 2222 1222333445544554444443 Q ss_pred eEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 316 HLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMR 395 (629) Q Consensus 316 hL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~ 395 (629) .+.. .+.--+++|+..+..||+.|.||| .|||.+++ |. +....-++..|.|.++.|+++|++.+|.+ T Consensus 256 ~~~~---~d~q~~e~~~~~~~~Ia~~fgVp~-~~lg~~~~-~~----~~~~~~~~~~l~P~~~~ie~~l~~~l~~~---- 322 (406) T protein:vir:95 256 PLSL---KDIAINEAVELDKRTVAGMFGVPA-FLLGIGEF-NR----DEYNNFINSTILPIAKGIEQELTRKLLIS---- 322 (406) T ss_pred cCCh---hHHHHHHHHHHHHHHHHHHhCCCH-HHcCCCCc-hH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCC---- Confidence 3332 233346899999999999999999 77787543 32 22334577889999999999999888753 Q ss_pred cCCChhheEeeecCcccccCCCchHH---HHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhh Q lcl|Aclame:pro 396 EGIDPNAYVVWHDASQLTVDPDKTDE---ARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP 472 (629) Q Consensus 396 eG~d~~~yv~w~DaS~L~~~Pd~t~e---A~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~ 472 (629) .+|.|+||.+.|. +.|..+. ...+++.|++|.+++|+++|++.-.+=|- - +++ T Consensus 323 -----~~~~~~fd~~~l~-~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~-------~-----------~~~ 378 (406) T protein:vir:95 323 -----PDLYFKFNPRSLY-AYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSE-------L-----------VIL 378 (406) T ss_pred -----CCcEEEeechhhh-cCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce-------e-----------eec Confidence 4578999999994 3443333 35689999999999999999985422111 0 000 Q ss_pred hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 473 TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 473 ~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) ....+++-. .. ......+|..+...+.| T Consensus 379 ------~n~~~~~~~------~~-~~~~k~g~~~~~~~~~~ 406 (406) T protein:vir:95 379 ------ENYIPLDKI------GD-QSKLKGGDNSGADGQTD 406 (406) T ss_pred ------cCccchhhc------cc-ccccCCCCCCCCCCCCC Confidence 000000000 00 00000001111111111 No 34 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=99.61 E-value=8.1e-16 Score=103.33 Aligned_cols=408 Identities=12% Similarity=0.126 Sum_probs=203.8 Q ss_pred CCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHH-------------HHHHhhcchhhhhhh Q lcl|Aclame:pro 3 PTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDA-------------WKAYDAVGELRYYVG 69 (629) Q Consensus 3 ~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eA-------------W~~~d~VgELryyvg 69 (629) -+..|+.-.=+ |.++.-..+.++..++..+ .. ..+|..+. ++-+-..+-+.-.+. T Consensus 1 ~~~~~~mg~f~------r~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~ 68 (432) T protein:vir:81 1 MPDEKKLGLFG------QLKAMFVPPDPVDIGGGQT-----FT-PVNATARDLGIIISDTGAAVNADAIMRLDAVAACVK 68 (432) T ss_pred CCchhhcchhh------hhhhhcccccccccccccc-----cc-cCccchhhhcccccccCcccchHhhhccHHHHHHHH Confidence 11111110000 0000000011111111000 00 00111111 111223455666788 Q ss_pred hhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCccc Q lcl|Aclame:pro 70 WRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRL 149 (629) Q Consensus 70 Wr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~ 149 (629) -+++++|++.+..-+.+.|+... .++++ +..+.+.=--.-+-..++++.+..++.+-|++|+.+.- .+|.. T Consensus 69 ~Ia~~ia~lp~~~y~~~~~g~~~--~~~~~------l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~-~~g~~ 139 (432) T protein:vir:81 69 LVSQAIAAMPLTMYMRTPDGRKE--AVNHP------LYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVV-TDGRI 139 (432) T ss_pred HHHHhhhhCceeeEEecCCccee--cccch------HHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEe-cCCcE Confidence 89999999999888877773322 12232 44444432333456678999999999999999987753 33421 Q ss_pred ccCcccchhhheecHHHhcc--CCC-eeE--EECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhh Q lcl|Aclame:pro 150 DSNGNPVPEWLALTPEEVRA--SEK-KTI--IELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRT 224 (629) Q Consensus 150 d~~~~~~~eW~~vt~~eI~~--~~~-~~~--i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rt 224 (629) .+.+.|..+.|.. ..+ ... +...+|....| ...| |+++ +.++-....--||+.++.+.+.--.-. T Consensus 140 -------~~L~~l~~~~v~v~~~~~g~~~y~~~~~~g~~~~~-~~~~-iih~-r~~~~dg~~G~spi~~~~~~i~~~~~~ 209 (432) T protein:vir:81 140 -------ESLQYLANDRLTITTDPKGNTAYRYRRTDGQMIDI-PKQQ-IWKI-MGYSLDGENGLSAIRYGAQIFGTAIAA 209 (432) T ss_pred -------EEEEEEcCCceEEEECCCCcEEEEEEecCceEEEE-cccc-EEEe-cCCCCCCcccccHHHHHHHHHHHHHHH Confidence 1233333333321 111 121 22233433222 2233 4443 222223345568887776655544444 Q ss_pred hHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceee Q lcl|Aclame:pro 225 TKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFA 304 (629) Q Consensus 225 tk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva 304 (629) .+...+..+.-....|||-+|+.++ ..+.+.+.+-+.. ..+ +-=++|+ T Consensus 210 ~~~~~~~f~ng~~~~gil~~~~~l~----------------------~e~~~~~~~~~~~-----~~n-----ag~~~vl 257 (432) T protein:vir:81 210 EAQAARAFRNGQLQSVYYQIDRFLT----------------------DDQYDSFAKKVSG-----SVE-----AGRAPLL 257 (432) T ss_pred HHHHHHHHhcCCCcceEEecCCCCC----------------------HHHHHHHHHHHhh-----hhc-----CCCceec Confidence 4444444443344457777765543 1123444444321 111 1113333 Q ss_pred eechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcch---hhHhHHhhhhhhhhhhhHHHHHH Q lcl|Aclame:pro 305 AAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNH---WSAWQIGDEDVRLHILPPVEMLC 381 (629) Q Consensus 305 ~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nh---wsAw~i~de~v~~hI~P~~~~i~ 381 (629) ++. .+++-|.+..+- .--+++|+..+..||..|.||| .|||.....+. .+..+....=++..|.|.+..|+ T Consensus 258 --~~g--~~~~~l~~~~~d-~q~le~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~~~~sn~eq~~~~f~~~tl~P~~~~ie 331 (432) T protein:vir:81 258 --EGG--MDVKSLGLNPVD-AQLLQSRQYSVESICRFFGVPP-SMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIE 331 (432) T ss_pred --CCC--ceEEEccCCHHH-HHHHHHHHHHHHHHHHHhCCCH-HHcCCcCCccccccchHHHHHHHHHHHHHHHHHHHHH Confidence 222 255666654332 2237899999999999999999 77787433333 44567777778889999999999 Q ss_pred HHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHH Q lcl|Aclame:pro 382 EAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQ 458 (629) Q Consensus 382 ~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q 458 (629) ++|++.+|.+.- . ..|.|-||.+.|. ++|..+.+ ..++..|++|.+++|+++|++.-.+=| T Consensus 332 ~~l~~kLl~~~~---~---~~~~~~fd~~~ll-r~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~~--------- 395 (432) T protein:vir:81 332 QSIALNLLSPAE---R---RRYFADFDTSALL-RADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNA--------- 395 (432) T ss_pred HHHHhhccCccc---c---CceEEEeechhhh-ccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCc--------- Confidence 999998887622 1 3588899999984 33444333 347889999999999999997432111 Q ss_pred HHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCC Q lcl|Aclame:pro 459 WARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGAS 509 (629) Q Consensus 459 ~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~ 509 (629) +.+..+-.++| + ...+... .+.++..+..+++++.+. T Consensus 396 ---~~~~~~~~~~p----l-~~~~~~~------~~~~~~~~~n~~~~~~~~ 432 (432) T protein:vir:81 396 ---AVLTVQSAMVP----L-DSIGLQA------SPEPASGLGNQQQDKVSK 432 (432) T ss_pred ---ceEeecCcccc----h-hhhccCC------CCCCCCCCCCcccccccC Confidence 00000111110 0 0111100 111111111111110000 No 35 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=99.61 E-value=2.1e-15 Score=101.04 Aligned_cols=411 Identities=12% Similarity=0.072 Sum_probs=214.4 Q ss_pred CC---CCcceeEEcCCCCCCC----cccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MA---PTSLRIVRRPKSEPVS----TRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSS 73 (629) Q Consensus 1 ma---~t~lr~vr~pk~~~~~----~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~ 73 (629) |- .||- +.|++.--- -+++.+..-+.+++.-.-.+-..+..+..- . .+.+-.++-+.-.|.-+++ T Consensus 1 ~~~~~~~~~---~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-s----~~~al~~~~v~~cv~~Ia~ 72 (424) T protein:vir:45 1 MLYCWWAHW---LWPEGGRVLLDALFRSKSLENPSTPITGDAVDTDGLFRADVYV-S----PETAMKLAAVYSCIYVLSS 72 (424) T ss_pred CeeEeeece---ecCcchhHHHHhhccccCCCCCccccchhhhhhhccccCCcee-c----hHHhhccHHHHHHHHHHHH Confidence 11 1111 111111100 011223322233322111000000000000 0 0111134455566778899 Q ss_pred ceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCc Q lcl|Aclame:pro 74 SASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNG 153 (629) Q Consensus 74 s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~ 153 (629) ++|.+-+..=+-+ ++|.... .++ .+.++...=--.-+-..++++.++.+|.+-|++|+.|.--..|+ T Consensus 73 ~iA~lp~~v~~~~-~~~~~~~-~~~------~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~----- 139 (424) T protein:vir:45 73 SLAQMPLHVMRRH-KGKVEPA-RDH------PAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGE----- 139 (424) T ss_pred HHhhCceEEEEec-CCceeec-ccc------hHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCc----- Confidence 9999877665555 4333321 122 25555543333445566799999999999999999875222222 Q ss_pred ccchhhheecHHH--hccCCCeeEEEC-CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 154 NPVPEWLALTPEE--VRASEKKTIIEL-PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIAN 230 (629) Q Consensus 154 ~~~~eW~~vt~~e--I~~~~~~~~i~l-P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~n 230 (629) +. +++.+..+. |...+++..... ..+...+|. ..| ||++=.+.+ .-..--||+..+.+.+.--.-..+...+ T Consensus 140 -~~-~L~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~~-~~e-Vih~r~~~~-d~~~G~spi~~~~~~i~~~~~~~~~~~~ 214 (424) T protein:vir:45 140 -VI-SLDCCMPWETTLMNTGGRYTYGLYNEYGAFAIS-PDD-MIHIRALGN-NQKMGLSPIMQHAETIGMGMSGQKYTES 214 (424) T ss_pred -EE-EEEEecCceEEEEEcCCeEEEEEEecCceEEEC-ccc-EEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 11 222232222 233344333222 112222232 233 444434443 2345678888877776655555555555 Q ss_pred HHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHH Q lcl|Aclame:pro 231 ASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGEL 310 (629) Q Consensus 231 aa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~ 310 (629) ..+.-..-.|||-+|+.++ ....+.+.+.+.+.-+-..++.+ -++|+ +++ T Consensus 215 ~f~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~~~g~~~n~g-----~~~vl--~~g- 264 (424) T protein:vir:45 215 FFSGNARPAGIVSVKSGLN----------------------KESWGWLKDQWQKASQALRRQEN-----KTMLL--PAD- 264 (424) T ss_pred HHhccCCccEEEEeCCCCC----------------------HHHHHHHHHHHHHHhccccccCC-----ceeEc--CCC- Confidence 5555555667887776554 12344555555433222112222 23333 322 Q ss_pred hcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 311 IKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) Q Consensus 311 i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr 390 (629) -+++.|.+.. .+.--+++|+-.+..||..|.||| .+||...++|+.++.+....=++..|.|.++.|+++|++.+|. T Consensus 265 -~~~~~l~~~~-~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~kLl~ 341 (424) T protein:vir:45 265 -LDYKALTVSP-VDAQIIDMMKLNRSMIAGIFNIPA-HMINDLEKATFSNISAQAIQFVRYTMMPWVTNWEQELNRRLFT 341 (424) T ss_pred -ceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 3556665532 222248999999999999999999 6677666789999999999999999999999999999999886 Q ss_pred HHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 391 TVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQD 467 (629) Q Consensus 391 ~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~ 467 (629) +.=. ...|-|.||.+.|.. .|..+.+ ..++..|++|.+++|++.|++.-.+=|. T Consensus 342 ~~e~-----~~g~~i~fd~~~llr-~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~----------------- 398 (424) T protein:vir:45 342 RAEL-----AAGYYVRFNLTGLLR-GTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDE----------------- 398 (424) T ss_pred hhhh-----cCCcEEEeechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce----------------- Confidence 5221 123678899999843 3444333 3488899999999999999985432221 Q ss_pred cchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCc Q lcl|Aclame:pro 468 PNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDD 524 (629) Q Consensus 468 P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~ 524 (629) ++ .|+ .. +.+.++..+ .+++++... + T Consensus 399 --~~---~~~-------n~-----~~~~~~~~~------------~~~~~~~~~--~ 424 (424) T protein:vir:45 399 --ML---VSV-------NA-----ANPAGDFKP------------PKNDEGKTN--E 424 (424) T ss_pred --ee---ecc-------cc-----cccccccCC------------CCCCCCCCC--C Confidence 00 000 00 000000000 000000000 0 No 36 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=99.60 E-value=1e-15 Score=102.79 Aligned_cols=398 Identities=14% Similarity=0.117 Sum_probs=218.0 Q ss_pred CCCC----cceeEEcCCCCCCCcccc--eeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPT----SLRIVRRPKSEPVSTRQR--ALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t----~lr~vr~pk~~~~~~r~r--~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) |+-- .+...++.+. +...++- ....+.++...+...+ ....++.. -.++ ..+-+.-.+.-++++ T Consensus 4 ~~~~~~~~~m~~F~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~~~-~~~~v~~cI~~ia~~ 73 (413) T protein:vir:96 4 VSEIRKDKNLKFFNNKRS-PTEESKAKDEIPKAPQVVMTLPNFF-KELISDGY-------TKLS-DSPEVRMAVDCIADL 73 (413) T ss_pred cchhhhhhcCCccccCCC-cchhhhhhccccccccccccchhhH-hhhccchh-------HHHh-hchHHHHHHHHHHHh Confidence 2211 1223334332 2222111 1111111111111111 01111100 0112 245666678899999 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +|++.+..-+-+.| |..+ +++ ....+.+.=--.-+-..++++.+..++-+-|++||.+.-...|. T Consensus 74 ia~~~~~~~~~~~~-~~~~--~~~------~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~------ 138 (413) T protein:vir:96 74 VSNMTIQLMQNGET-GDKR--IKN------DLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGD------ 138 (413) T ss_pred hccCceEEEEecCC-Cccc--ccc------HHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCC------ Confidence 99999888787765 4332 223 24444543334445667899999999999999999986433331 Q ss_pred cchhhheecHHHhc--cCCCeeEEECCCCCCCcccCCCceEEEE-eCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 155 PVPEWLALTPEEVR--ASEKKTIIELPTGDKHEFRDGLDGMFRV-WNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 155 ~~~eW~~vt~~eI~--~~~~~~~i~lP~g~~h~~~~~~D~~~Rv-W~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) +..+.+.+-.+.|. ..++......-.+. .+|. ..| ||++ ++|++..-..--||+.++.+.+.-..-..+...+. T Consensus 139 ~~~~L~~l~~~~v~~~~~~~~~~y~~~~~~-~~~~-~~e-vih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 215 (413) T protein:vir:96 139 KIIGLTPISPYKVTFNVSDDDLDYSITFDN-KEYD-PST-LLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGF 215 (413) T ss_pred ceEEEEEecCceeEEEEcCCeEEEEEeecC-cEEc-hhh-EEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 11122222222222 22333222221111 1332 233 5554 57888777778899999988888888888888888 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHh Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i 311 (629) .+.-..-.|||-+|+.++ ....+.+++.+. ..+.-.+. +-=++|+...+.-. T Consensus 216 ~~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~----~~~~g~~n--~g~~~vl~~~~~~~ 267 (413) T protein:vir:96 216 MASEYMPNLIVSVDSDSD----------------------ELSDEEGRENFE----EMYLKRKE--AGKPWIIPEGMVNV 267 (413) T ss_pred HhccCCccEEEEeCCCCC----------------------HHHHHHHHHHHH----HHhcCccc--cCceeeecCCcccc Confidence 888888889998887654 112344555544 22222111 11223333333322 Q ss_pred cCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 KNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 312 ~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) ..++-+.. .+.--+++|+..+..||..|.||| .+||.+ +.|. +....-++..|.|.++.|+++|++.+|. T Consensus 268 ~~~~~~~~---~d~q~~e~~~~~~~~Ia~~fgVP~-~~lg~~-~~~~----~~~~~~~~~~l~P~~~~ie~~ln~~ll~- 337 (413) T protein:vir:96 268 QQIKPLTL---NDLAINDAVTLDKKTVAGIFGVPA-FLLGVG-TYNK----DEFNNFINTKIMSIAQVIQQTYNKLIVE- 337 (413) T ss_pred cccccCCh---hHHHHHHHHHHHHHHHHHHhCCCH-HHcCCC-cchH----HHHHHHHHHHHHHHHHHHHHHHHHhhCC- Confidence 23332322 233457899999999999999999 678875 4443 3344568889999999999999998763 Q ss_pred HHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 392 VLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDP 468 (629) Q Consensus 392 ~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P 468 (629) ..|-|.||.++|. +.|..+.+ ..+++.|++|.+++|+++|++-..+=| .- T Consensus 338 ---------~~~~~~fd~~~ll-~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd-------~~---------- 390 (413) T protein:vir:96 338 ---------EDMYFSLNPRSLY-NYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMD-------DL---------- 390 (413) T ss_pred ---------CCcEEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-------ee---------- Confidence 2467899999984 34544444 368899999999999999998543221 10 Q ss_pred chhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC Q lcl|Aclame:pro 469 NLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDT 516 (629) Q Consensus 469 ~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdT 516 (629) -++ .. ..|.+....... ...-+| T Consensus 391 ----------------~~~--~n-~~~~~~~~~~~~------~~~~dt 413 (413) T protein:vir:96 391 ----------------LVL--EN-YLQQKDLVNQKK------LIQDET 413 (413) T ss_pred ----------------eec--cc-ccchhhcccccC------CCCCCC Confidence 000 00 011111100000 001111 No 37 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=99.60 E-value=2e-14 Score=95.64 Aligned_cols=517 Identities=16% Similarity=0.159 Sum_probs=222.5 Q ss_pred eEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEEEeecC Q lcl|Aclame:pro 8 IVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIASAIDP 87 (629) Q Consensus 8 ~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~aseiD~ 87 (629) +...|.++-- +-+|..+....=-.++| -.++-+.-.|.-+++++|.+.|..- +. T Consensus 1 ~~~~~~~~g~---------------------~~~~~~~~~~~~~~~~~---~~~~~V~acV~~Ia~~iA~lpl~l~--~~ 54 (723) T protein:vir:94 1 MTTFPSGAGG---------------------WNAWSADSVFGNGAKGW---SNSAVAYRCISMLANNAASVDLVVR--GP 54 (723) T ss_pred CcccccCCCc---------------------cccccccccccccHHHH---hhhHHHHHHHHHHHHhhccceeEEE--cC Confidence 1111111000 00000000000011222 2345566677889999999988763 33 Q ss_pred CCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHH- Q lcl|Aclame:pro 88 DTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEE- 166 (629) Q Consensus 88 DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~e- 166 (629) | | .+.++. -+.++...=----+-..++++.+..+|..-|++|+.++-...+ ..|.+..=|+. ..+- T Consensus 55 ~-~----~~~~~~----~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~---~~g~p~~l~~l-~~~~~ 121 (723) T protein:vir:94 55 D-G----ELDELH----PLSQLWNVMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRT---PAGVPDEIWYV-YDRVT 121 (723) T ss_pred C-C----ccchhh----HHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCc---cccceeEEEEe-cCcce Confidence 3 2 222221 2445554323334455789999999999999999997642211 12222222221 1110 Q ss_pred -hc--cCCC--------eeEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 167 -VR--ASEK--------KTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 167 -I~--~~~~--------~~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) +. .+++ ...+...+|....|. ..|++ ||..+ |..-..--||+.++...+ .+...+.+.. . T Consensus 122 ~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~~-~~dIiHir~~~--~~dg~~G~Spi~~a~~~i----~~~~aa~~~~-~ 193 (723) T protein:vir:94 122 TIVATRAADAVPQAQIIGYVIERTDGVRVPVL-ADEMLWLRFSD--PYDPLAVMAPWKAARAAV----DADFYAATWQ-R 193 (723) T ss_pred EEeecCCCccceeeeeeEEEEEecCceeEEec-ccceEEecCCC--CCCCcccccHHHHHHHHH----HHHHHHHHHH-H Confidence 00 1110 012334445433332 23433 44444 333345667776655444 4444444433 3 Q ss_pred HhhhCceeeecCCc-cCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHH--- Q lcl|Aclame:pro 235 RLIGNGVVFVPHEM-SLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGEL--- 310 (629) Q Consensus 235 RL~gnGvlfvPqe~-slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~--- 310 (629) ++..||. .|... +.|. ......+.+.+-|. ..+. ++.-+--|+|+..-+.. T Consensus 194 ~~f~NG~--~p~giL~~~~-----------------l~~e~~~~~~~~~~----~~~~--G~~Nagk~~vL~g~~~~~~v 248 (723) T protein:vir:94 194 QSFKNGA--RPGGVVNLGD-----------------MDEQTFTKTVAAFR----SQVE--GVQNAGRHLLIAGQGSDGGA 248 (723) T ss_pred HHHhcCC--CcceEEEcCC-----------------CCHHHHHHHHHHHH----HHhh--chhhcCcceeeccccccccc Confidence 4445543 12111 1110 01123333444333 1111 23345566776543322 Q ss_pred -hcCceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 311 -IKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQV 388 (629) Q Consensus 311 -i~~ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~ 388 (629) -+.+|.-.++....+ --+++|+..+..||+.|.|||..|+| +++..+..+....-++..|.|.++.|+++|++.+ T Consensus 249 l~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~---~st~sN~e~~~~~f~~~tL~P~~~~ie~~ln~~L 325 (723) T protein:vir:94 249 AGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLG---GSTYENQAEAKAAVWTETLIPQMEVMASITDLQL 325 (723) T ss_pred ccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhHhh Confidence 123444444333333 35789999999999999999965644 3444556666666678999999999999999988 Q ss_pred HHHHHHhcCCChhheEeeecCcccc-cCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhc Q lcl|Aclame:pro 389 LRTVLMREGIDPNAYVVWHDASQLT-VDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQ 466 (629) Q Consensus 389 lr~~Le~eG~d~~~yv~w~DaS~L~-~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~ 466 (629) |. ++|. +|-|-||..+|. .|....-++ ..++..|++|.+++|+++|++.-.+-|. T Consensus 326 l~----~~g~---~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~---------------- 382 (723) T protein:vir:94 326 LP----DIGW---TVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIG---------------- 382 (723) T ss_pred cc----cccC---ceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcc---------------- Confidence 73 3454 355778888754 343222223 4478899999999999999974333221 Q ss_pred CcchhhhhhhhcccccCccCCCCCCCCCCCC-----CCCCC-CcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHH-HHH Q lcl|Aclame:pro 467 DPNLLPTLAVLIPELADVEFPTPTVALPPAE-----EQDGD-EEASGASRREEPDTEDDAGTDDSDQASLDSRETA-MVE 539 (629) Q Consensus 467 ~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~-----~~~~~-~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a-~V~ 539 (629) + .++.|+-..+++..-|.|....-... +.... ...++.+...-|..+.|++.+..++ . ...+.+ ... T Consensus 383 ~----~~~~p~~~~~a~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ 456 (723) T protein:vir:94 383 Q----MTLTPYRAQFAPAPAPAPAVEEGAARMLALLERVAADRPLPELPVRATTVLHHDPGPDPQQT-L-YERLEALLQP 456 (723) T ss_pred c----ceeccccccccCCCCCCccchhhhHhhhhhccccccccCcCCCCCCCCCCCCCCcccCCchh-H-HHHHHHHHhh Confidence 0 11223322222222222111000000 00000 0000111111112221211111111 0 011222 222 Q ss_pred HHHHHHHHHhhc---------ccCChh--hHHHhcccchHhhhhh--cCC-CChhHHHHHHhhhhhhhhHHHHHHhCC-- Q lcl|Aclame:pro 540 ALVFRALELAGK---------RSRTRS--LPYELRQLSDRELVRR--LEP-VRREHVADLIRGWDSMLEERAVQALNM-- 603 (629) Q Consensus 540 ~lv~RALelAGk---------R~r~r~--~~ar~r~ip~h~~hr~--~~p-v~~~~v~rLi~Gwd~~ld~~~~a~lG~-- 603 (629) +++.=|+..|+- |..+.+ -.+++|.+..+.+-+. +.+ ..+.-..+.+...+.... ..+.+--+ T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~ 535 (723) T protein:vir:94 457 LLVELGRRQAAVTLREFDLLMRGERAAALWLADVRAVASEAYERGALLAPPDAEEVPPARLTRLDLAPE-ELAVRINVKR 535 (723) T ss_pred hHHHHHHHHHHHHHHhhchhhcchHHHHHHHHHHHHHHHhccccceeccccccchhhHHHHHHHHHhhH-HHHHHHHHHH Confidence 333435555552 222222 2357788887766554 211 111111222222232221 11111000 Q ss_pred ----------CHHHHHHHHH-------HHHHHHHhhhh--ccccC Q lcl|Aclame:pro 604 ----------NIPGIRAAVK-------RAVYGELTKTI--DGEVS 629 (629) Q Consensus 604 ----------D~~~lr~~v~-------~~v~~~lt~~v--d~~v~ 629 (629) -.+.|+.... ..+...|..++ +-.+. T Consensus 536 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 580 (723) T protein:vir:94 536 IFNARKWVARTKDTLRGWYETAWRTGGDHVAAQLGDGFDMDEQVL 580 (723) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccHHHH Confidence 0111111111 11111111110 00000 No 38 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=99.59 E-value=3.3e-15 Score=99.97 Aligned_cols=404 Identities=12% Similarity=0.096 Sum_probs=214.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeeccc-------ccCcccchhhh-hc---cCCcccchhHHHHHHHhhcchhhhhhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQ-------PVENPGKAFRK-AM---GSSTRTDWQEDAWKAYDAVGELRYYVG 69 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa-------~~~~~~~~~kk-~~---~~~~~~~WQ~eAW~~~d~VgELryyvg 69 (629) |--+..-+--+++.+==.. -++.-.... -.+.| .+.. +. ..+.. .|+ ..+-+.-.|. T Consensus 1 ~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~-----~al----~~~~v~~cv~ 68 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWAR-LQSWFVGGRLVTPNQGSQTGP--VSAHGHLGDSSINDE-----RIL----QISTVWRCVS 68 (424) T ss_pred CCCCcceEeecCCCchHHH-HHhhhcccccccccccccccc--cccccccccccccHH-----Hhh----ccHHHHHHHH Confidence 3222222222211111100 000000000 00000 0000 00 01111 111 1233555678 Q ss_pred hhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCccc Q lcl|Aclame:pro 70 WRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRL 149 (629) Q Consensus 70 Wr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~ 149 (629) -+++++|.+.+..=+.+.|+|...-..+|+ +..+...=----+-..++++.+..+|-+-|++|+.+.--..|. T Consensus 69 ~Ia~~iA~lp~~~~~~~~~~~~~~~~~~~~------l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~- 141 (424) T protein:vir:18 69 LISTLTACLPLDVFETDQNDNRKKVDLSNP------LARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGD- 141 (424) T ss_pred HHHHhhccCceEEEEeecCCceeeeccccH------HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc- Confidence 899999999998888888877665444553 4444443223334456799999999999999999885222222 Q ss_pred ccCcccchhhheecHHHhc--cCCCeeEEEC-CCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhh Q lcl|Aclame:pro 150 DSNGNPVPEWLALTPEEVR--ASEKKTIIEL-PTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTT 225 (629) Q Consensus 150 d~~~~~~~eW~~vt~~eI~--~~~~~~~i~l-P~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rtt 225 (629) ..+++.+..+.|. ..+++...+. -+|....| ...|++ ||-.+++. ..--||+.++.+.+.--.-.. T Consensus 142 ------~~~L~pl~~~~V~v~~~~~~~~y~~~~~g~~~~~-~~~eIih~r~~~~dg---~~G~spi~~~~~~i~~~~a~~ 211 (424) T protein:vir:18 142 ------VISLLPLQSANMDVKLVGKKVVYRYQRDSEYADF-SQKEIFHLKGFGFTG---LVGLSPIAFACKSAGVAVAME 211 (424) T ss_pred ------EEEEEEecCcceEEEEcCCeEEEEEEeCCeEEEe-ccccEEEecCcCCCC---cccccHHHHHHHHHHHHHHHH Confidence 1123344333333 3344433232 22332222 233444 55333332 345688888777665555555 Q ss_pred HHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeee Q lcl|Aclame:pro 226 KTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAA 305 (629) Q Consensus 226 k~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~ 305 (629) +...+..+.-..-.|||-+|+.+. .....+.+.+.+-+. +.-+++ -=++|+ T Consensus 212 ~~~~~~f~ng~~p~gil~~~~~~l---------------------~~e~~~~~~~~~~~~----~~g~na---g~~~vl- 262 (424) T protein:vir:18 212 DQQRDFFANGAKSPQILSTGEKVL---------------------TEQQRSQVEENFKEI----AGGPVK---KRLWIL- 262 (424) T ss_pred HHHHHHHHccCCcceEEEeCCcCC---------------------CHHHHHHHHHHHHHH----hCCccc---CCceec- Confidence 555555555555567887776532 122445566665432 221221 112233 Q ss_pred echHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchh--hHhHHhhhhhhhhhhhHHHHHHHH Q lcl|Aclame:pro 306 APGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHW--SAWQIGDEDVRLHILPPVEMLCEA 383 (629) Q Consensus 306 vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nhw--sAw~i~de~v~~hI~P~~~~i~~a 383 (629) ++. .+++-|.+.. .+.--+++|+-.+..||..|.||| .|||...+.+.| +..+....-++..|.|.+..|+++ T Consensus 263 -~~g--~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~~ 337 (424) T protein:vir:18 263 -EAG--FSTSAIGVTP-QDAEMMASRKFQVSELARFFGVPP-HLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWENS 337 (424) T ss_pred -cCC--ceEEecCCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 332 2455555432 222238899999999999999999 667875566664 446777777899999999999999 Q ss_pred HHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHH Q lcl|Aclame:pro 384 ITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWA 460 (629) Q Consensus 384 lt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a 460 (629) |++.+|.+. +. ..|.|.||.+.|. +.|..+.+ ..+++.|++|.+++|++.|++--.+=|. T Consensus 338 l~~~L~~~~----~~--~~~~~~fd~~~ll-r~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~---------- 400 (424) T protein:vir:18 338 IQRWLIPAK----DV--GRIHAEHNLDGLL-RGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDV---------- 400 (424) T ss_pred HHhhcCCcc----cc--CCeEEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe---------- Confidence 999887652 22 2588999999983 34544443 4488899999999999999884322110 Q ss_pred HHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 461 RDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 461 ~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) + + ++ .... |.+.. ..+.+|..++. T Consensus 401 ---------~-------~-------~~--~n~~-~l~~~---------~~~~~p~~~ga 424 (424) T protein:vir:18 401 ---------A-------M-------RQ--SQYV-PITDL---------GTNKEPRNNGA 424 (424) T ss_pred ---------e-------e-------ec--cCcc-chHhh---------hccCCCccCCC Confidence 0 0 00 0000 00000 00111111111 No 39 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=99.58 E-value=2.6e-15 Score=100.52 Aligned_cols=373 Identities=13% Similarity=0.107 Sum_probs=201.7 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |-==+-+.. .|.++....+.. + ..+.....++....|=+ ++-+-..+-+.-.+.=+++.||.+.+ T Consensus 1 Mg~~~~~~~--~k~~~~~~~~~~---------~--~~~~~~~~~~~~~~~v~--~~~~l~~~~v~~~i~~ia~~ia~~~~ 65 (383) T protein:vir:10 1 MGLLTPKNF--SKRNAKNMVYPS---------N--PAFFTTTVGGMQLSYVS--ALSALQNTNVYSVINRIASDVSSAHF 65 (383) T ss_pred CCccccccc--cccccccccccc---------c--hhhhhhhccCccccccc--hhHhhcchHHHHHHHHHHHhhccCce Confidence 332221111 122211100000 0 01111111111111110 01111344556677788999999888 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+-..+ +-...||+. +-..++++.++.++-+-|++||.+....-+ .+ T Consensus 66 ~~~~~~~~-----~ll~~PN~~---------------~t~~~f~~~~~~~l~l~Gn~~~~i~~~~~~-----------~~ 114 (383) T protein:vir:10 66 KTENTATL-----NRLESPSSL---------------IGRFSFWQGALMQLCLSGNDYIPLVGQNLE-----------HI 114 (383) T ss_pred eecccchh-----hhhhCCCCC---------------CCHHHHHHHHHHHhhhcCCeEEEEEcCcee-----------Ee Confidence 55322111 112223322 345788999999999999999988532211 11 Q ss_pred eecHHHhc--cCCCe--eEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhH Q lcl|Aclame:pro 161 ALTPEEVR--ASEKK--TIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSR 235 (629) Q Consensus 161 ~vt~~eI~--~~~~~--~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SR 235 (629) .+...-|. ..+++ ..+....+......+..|++ ||.++|.......--||+.+|...+.=...+.+...+..+.- T Consensus 115 p~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng 194 (383) T protein:vir:10 115 PNSDVQINYLPGNMGIVYTVLESNDRPKMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQ 194 (383) T ss_pred ecCcceEEEEEcCCceEEEEEEcCCceEEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 11111121 22222 12222333322222344554 677777666656667999999988887777777777777767 Q ss_pred hhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCce Q lcl|Aclame:pro 236 LIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVT 315 (629) Q Consensus 236 L~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ik 315 (629) .+-.|||.+|+.++= ....+.+.+.+-+.- .+ .++ --|+|+. + -.+++ T Consensus 195 ~~~~~il~~~~~~~~---------------------~e~~~~~~~~~~~~~-~~---~n~---~~~~vl~--~--g~~~~ 242 (383) T protein:vir:10 195 INPAGKLTISNYLSD---------------------GKDLESAREEFEKAN-TG---DNS---GRLMVLP--D--GFDYT 242 (383) T ss_pred CCcceEEEeCCCCCC---------------------HHHHHHHHHHHHHHh-Cc---ccc---CCccccC--C--CceEE Confidence 777788888765431 124455666554331 11 111 1223332 1 23566 Q ss_pred eEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhcccc--CcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 HLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGS--NSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) Q Consensus 316 hL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~--~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~L 393 (629) .|.+.....+.-.++|+..++.||.+|.||| .+||.+. +.++.++-++.. .+...|.|.++.|++.|++.+|. T Consensus 243 ~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp-~~lg~~~~~~~~~sn~eq~~~-~~~~~l~P~~~~ie~~l~~~l~~--- 317 (383) T protein:vir:10 243 QLEMKTDVFKALADNSAYSADQISKAFGVPS-DILGGGTSTESQHSNIDQIKA-TYLANLNSYVNPIVDELRLKMNA--- 317 (383) T ss_pred ecCCChhHHHHHHHHHHHHHHHHHHHhCCCH-HHcCCccCCCCccccHHHHHH-HHHHHHHHHHHHHHHHHHHhhCC--- Confidence 6666443333334899999999999999999 7788643 556667777754 45568999999999999987653 Q ss_pred HhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 394 MREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 394 e~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) |-+.||.+.|. +.|..+.+ ..+++.|++|.+++|+++|+.--.+-|. T Consensus 318 ---------~~~~f~~~~l~-~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~-------------------- 367 (383) T protein:vir:10 318 ---------PDLELDIKDML-DVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNL-------------------- 367 (383) T ss_pred ---------ceEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCcc-------------------- Confidence 23678888874 22443333 4588999999999999999764322221 Q ss_pred hhhhhhhcccccCccCCCCCCCCCCCCCCCCCCc Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEE 504 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e 504 (629) |.......+.+ .+++| T Consensus 368 ----------------~~~~~~~~~~~--gGd~e 383 (383) T protein:vir:10 368 ----------------PEFKPLTNETK--GGDDK 383 (383) T ss_pred ----------------cccCCCcccCC--CCCCC Confidence 11111111111 11111 No 40 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=99.58 E-value=6e-15 Score=98.57 Aligned_cols=402 Identities=16% Similarity=0.154 Sum_probs=217.4 Q ss_pred CCCCcceeEEcCCCCCCCcccc--eeeecccccC-cccchhhhhccCCcccchhHHHHHHH-------------hhcchh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQR--ALVAASQPVE-NPGKAFRKAMGSSTRTDWQEDAWKAY-------------DAVGEL 64 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r--~l~aAsa~~~-~~~~~~kk~~~~~~~~~WQ~eAW~~~-------------d~VgEL 64 (629) |.= +.-.|+-|....+.+.+ .-..++++.+ .++..|+. ..+..-..|-.- -.++-+ T Consensus 1 Mgl--~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V 72 (431) T protein:vir:10 1 MGL--FDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEG------LDDPRLKEYIRRGELNGGTGRETRALRNMAV 72 (431) T ss_pred Ccc--hhhhhcCccccccccccccccccccccccccccccccc------ccchHHHHhhccCccCcceechhhhhccHHH Confidence 441 11233322211112212 1122222222 22222211 111111112100 023445 Q ss_pred hhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEc Q lcl|Aclame:pro 65 RYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFT 144 (629) Q Consensus 65 ryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r 144 (629) .-.+.-+++++|.+.+..=+-| +++.. ..+| .+..+.+.=----+-..++++.++.++.+-|++|+.|. | T Consensus 73 ~~ci~~Ia~~iA~lp~~v~~~~-~~~~~--~~~~------~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~-r 142 (431) T protein:vir:10 73 LRCVTLISGTIGMLPMNLISSD-DSKQV--LTDD------PAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIV-W 142 (431) T ss_pred HHHHHHHHHhhccCceEEEEec-Cceee--eccc------hHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEE-E Confidence 5667788999999988876644 32321 1222 34555543333345677899999999999999999885 3 Q ss_pred CCcccccCcccchhhheecHHHhc--cC-CCeeE--EECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHH Q lcl|Aclame:pro 145 DKSRLDSNGNPVPEWLALTPEEVR--AS-EKKTI--IELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSL 218 (629) Q Consensus 145 ~~~~~d~~~~~~~eW~~vt~~eI~--~~-~~~~~--i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~L 218 (629) +.+. ++ +.+.+.+..|. .. .++.. +..+.|...+| ...|++ ||-.+++. ..--||+..+...+ T Consensus 143 ~~g~------~~-~L~pl~~~~v~~~~~~~~~~~y~~~~~~g~~~~~-~~~dViHir~~~~dg---~~G~spi~~~~~~i 211 (431) T protein:vir:10 143 SGNR------PI-RLIPMDRGSAKGRLTSTWQIVYDYTTPTGDKIEL-PAREVFHLRDLSIDG---VSGVSRVKLSGNAL 211 (431) T ss_pred cCCc------eE-EEEEEcCceeEEEEcCCCeEEEEEEeCCceEEEE-chhhEEEecCcCCCC---cccccHHHHHHHHH Confidence 3222 22 23333333333 11 22222 44566655444 334443 55333332 34568887777766 Q ss_pred HHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCcccccc Q lcl|Aclame:pro 219 KEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAA 298 (629) Q Consensus 219 rEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA 298 (629) .=..-..+...+..+.-.+-.|||-+|+.++ ....+.+.+.|.+ ++.-.+.+ T Consensus 212 ~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls----------------------~e~~~~~~~~~~~----~~~g~~n~-- 263 (431) T protein:vir:10 212 ELAEQAERAASRTFRTGVMAGGAIEVPKELS----------------------DNAYGRMKASVQE----NHTGSENA-- 263 (431) T ss_pred HHHHHHHHHHHHHHhccCCccEEEecCCCCC----------------------HHHHHHHHHHHHH----HhcCcccc-- Confidence 6555555665555555556667776666544 1234556666542 22211111 Q ss_pred ccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHH Q lcl|Aclame:pro 299 LIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVE 378 (629) Q Consensus 299 ~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~ 378 (629) -=|+|+ ++. -+++-|.+.. .+---+++|+..+..||..|.||| .+||...++++.+..+....=++..|.|.+. T Consensus 264 g~~~vl--~~g--~~~~~l~~~~-~d~q~le~r~~~~~~Ia~~fgVPp-~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~ 337 (431) T protein:vir:10 264 GSWMLL--EEG--ATAKQFSNTA-ASAQQIENRNHQIEEVARMYGVPR-PLLMMDDTSWGSGIEQLAIFFIQYGLSHWFV 337 (431) T ss_pred CCceec--CCC--ceEEEccCCh-hHHHHHHHHHHhHHHHHHHhCCCH-HHhCCCCCCccccHHHHHHHHHHHHHHHHHH Confidence 112232 332 3666676633 233346899999999999999999 7778767788889999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCC----CCHHHHHHHhCCCcccccCCC Q lcl|Aclame:pro 379 MLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGA----ITAEAMVKMLGLADDTVYDFT 451 (629) Q Consensus 379 ~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~----it~ealr~~~Gl~ed~~yd~t 451 (629) .|+++|++.+|-+.. . ..|-|.||.+.|. +.|..+.+ ..++..|+ +|.+++|+++|++--++++.+ T Consensus 338 ~ie~~ln~~Ll~~~~---~---~~~~~~fd~~~ll-r~d~~~r~~~~~~~~~~G~~~g~lT~NE~R~~~gl~p~~~~~gD 410 (431) T protein:vir:10 338 SWEQAAARAFLPEKM---L---GQRQFKFNEGALL-RGTLNDQAAFFSKALGAGGQSPWMKQNEVREMLDLPRADDPVAD 410 (431) T ss_pred HHHHHHHhhccChhh---c---CCceEEEechhhh-ccCHHHHHHHHHHHHhcccccCccCHHHHHHHhCCCCCCCcccc Confidence 999999998875422 1 2477889999983 34555444 23565555 999999999999865443321 Q ss_pred CHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCC Q lcl|Aclame:pro 452 TPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASR 510 (629) Q Consensus 452 t~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~ 510 (629) .. -.| .+..+.+ +.++.+ +.+ T Consensus 411 ~~-------------------------------~~p--~n~~~~~---~~~~~p--~~~ 431 (431) T protein:vir:10 411 QL-------------------------------RNP--MTQKQKG---SGDEPP--ATT 431 (431) T ss_pred ce-------------------------------ecc--cccccCC---CCCCCC--CCC Confidence 00 001 0100000 000000 000 No 41 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=99.57 E-value=5e-15 Score=99.01 Aligned_cols=401 Identities=12% Similarity=0.156 Sum_probs=197.4 Q ss_pred CCCCc------ccceeeecccccCcccchhhhhccCCcccchhHH-------------HHHHHhhcchhhhhhhhhhhce Q lcl|Aclame:pro 15 EPVST------RQRALVAASQPVENPGKAFRKAMGSSTRTDWQED-------------AWKAYDAVGELRYYVGWRSSSA 75 (629) Q Consensus 15 ~~~~~------r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~e-------------AW~~~d~VgELryyvgWr~~s~ 75 (629) -+|.. |.+++.....|+...+.. ++ +.. +|..+ -++-+-..+-+.-.|.=+++++ T Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~--~~~-~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~i 74 (432) T protein:vir:97 1 MPDEKKLGLLGQLKAMFVPPDPVDIGGGQ---TF--TPV-NATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAV 74 (432) T ss_pred CCCcccCchhhhhHhhcCCcccccccccc---cc--ccC-chhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhh Confidence 11111 111221111111111100 00 000 01000 0111223455666788899999 Q ss_pred eeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCccc Q lcl|Aclame:pro 76 SRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNP 155 (629) Q Consensus 76 Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~ 155 (629) |++.+..=+-+.|+ ... .++++ +..+...=--.-+-..++++.+..++-+-|++|+.+.- ..|.. T Consensus 75 a~lp~~~y~~~~~g-~~~-~~~~p------l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~-~~g~~------ 139 (432) T protein:vir:97 75 AAMPLMMYMRTPDG-RKE-AVNHP------LYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVV-TDGRI------ 139 (432) T ss_pred ccCceEEEEecCCC-ccc-ccccH------HHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEe-cCCcE------ Confidence 99999887777773 222 12332 44444332333466778999999999999999988754 33321 Q ss_pred chhhheecHHHhc--cCCC-eeE--EECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 156 VPEWLALTPEEVR--ASEK-KTI--IELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIAN 230 (629) Q Consensus 156 ~~eW~~vt~~eI~--~~~~-~~~--i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~n 230 (629) .+.+.|..+.|. ...+ ... +...+|...+| ...| |+++=++ +-.-..--||+..+.+.+.--....+...+ T Consensus 140 -~~L~~l~p~~v~v~~~~~g~~~y~~~~~~g~~~~~-~~~~-iih~r~~-~~dg~~G~spi~~~~~~i~~~~a~~~~~~~ 215 (432) T protein:vir:97 140 -ESLQYLANDRLTITTDTKGNTAYRYRRTDGQMIDI-PRQQ-IWKIMGY-SLDGENGLSAIRYGAQIFGTAIAAEAQAAR 215 (432) T ss_pred -EEEEEEcCcceEEEEcCCCcEEEEEEecCceEEEE-cccc-EEEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 122233333332 2121 111 22233332222 2223 4444222 222234457766655444333333333333 Q ss_pred HHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHH Q lcl|Aclame:pro 231 ASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGEL 310 (629) Q Consensus 231 aa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~ 310 (629) ..+.-....|||-+|+.++ ....+.|.+.+.. ..+.+ =++|+ ++. T Consensus 216 ~f~ng~~~~gil~~~~~l~----------------------~e~~~~~~~~~~~-----~~nag-----~~~vl--~~g- 260 (432) T protein:vir:97 216 AFRNGQLQSVYYQIDRFLT----------------------DDQYDSFSKKVSG-----SVEAG-----RAPLL--EGG- 260 (432) T ss_pred HHhccCCcceeEecCCCCC----------------------HHHHHHHHHHHhh-----hhcCC-----Cceec--CCC- Confidence 3333333456766665443 1234445554421 11111 12333 222 Q ss_pred hcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcch---hhHhHHhhhhhhhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 311 IKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNH---WSAWQIGDEDVRLHILPPVEMLCEAITN 386 (629) Q Consensus 311 i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nh---wsAw~i~de~v~~hI~P~~~~i~~alt~ 386 (629) -+++-|.+ ...+. -+++|+..+..||..|.||| .|||.....+. .+.-+....=++..|.|.++.|+++|++ T Consensus 261 -~~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~~~~s~~e~~~~~f~~~tl~P~~~~ie~~ln~ 336 (432) T protein:vir:97 261 -MDVKSLGL--NPVDAQLLQSRQYSVESICRFFGVPP-SMIGHSSAGTTSWGSGIESQQLGFLTMTLSPWLRRIEQSIAL 336 (432) T ss_pred -ceEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHcCCcCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 24555554 33333 37889999999999999999 77786433332 4455666666778999999999999999 Q ss_pred HHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHH Q lcl|Aclame:pro 387 QVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDR 463 (629) Q Consensus 387 ~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~ 463 (629) .+|.+. ++ ..|.|-||.+.|. +.|..+.+ ..++..|.+|.+++|+++|++--.+=|- . T Consensus 337 kLl~~~---e~---~~~~~~fd~~~ll-r~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~------------~ 397 (432) T protein:vir:97 337 NLLTPA---ER---RRYFADFDTSALL-RADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAA------------V 397 (432) T ss_pred hccCcc---cc---CceEEEeechhhh-ccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcc------------e Confidence 998773 22 3578899999984 33443333 4588999999999999999964322110 0 Q ss_pred HhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCC Q lcl|Aclame:pro 464 VGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGAS 509 (629) Q Consensus 464 v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~ 509 (629) +..+-.++ |+ ..+.. +..+.+...++.+++++... T Consensus 398 ~~~~~~~~----pl-~~~~~------~~~~~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:97 398 LTVQSAMV----PL-DSIGL------QASPEPASGLGNQQQDKVSK 432 (432) T ss_pred Eeeccccc----ch-hhhcc------cCCCCCCCCCCCcccccccC Confidence 00011111 11 00000 11111111111111111111 No 42 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=99.57 E-value=7.8e-15 Score=97.93 Aligned_cols=392 Identities=15% Similarity=0.104 Sum_probs=194.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHH-HHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQED-AWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~e-AW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |+=.+.= +++-+|.-.--++++.-++.. +|... -.+.|-.++.+.--|..+++++|.+- T Consensus 1 mg~~~~~---~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p 60 (403) T protein:vir:10 1 MGFKSWI---TEKLNPGQRIIRDMEPVSHRT-----------------NRKPFTTGQAYSKIEILNRTANMVIDSAAECS 60 (403) T ss_pred Ccchhhh---hhccchhhhhhhccccccccc-----------------CCcccccHHHHHHHHHHHHHHHHHHHHHhhCc Confidence 5543310 111111100001122111111 11110 01222246667778889999999987 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +...+-......-.+.+.+ ....+...=----+-..++++.++.++-+-|++||.+... . -| T Consensus 61 ~~v~~~~~~~~~~~~~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~~---~---------l~ 122 (403) T protein:vir:10 61 YTVGDKYNIVTYANGVKTK------TLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDGT---S---------LY 122 (403) T ss_pred eeEeecccccccccccccc------hHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeCc---e---------eE Confidence 6654332111111111222 1333444323344556789999999999999999876211 0 01 Q ss_pred heecHH--HhccCCCeeEEECCCCCCCcccCCCceE-EEEeC--CCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 160 LALTPE--EVRASEKKTIIELPTGDKHEFRDGLDGM-FRVWN--PRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 160 ~~vt~~--eI~~~~~~~~i~lP~g~~h~~~~~~D~~-~RvW~--P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) + +-.+ +|..+.++.....-.+....|.- .+++ ||-.. +++.....--||+.++...+.-.....+...+..+. T Consensus 123 ~-l~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~n 200 (403) T protein:vir:10 123 H-VPAALMQVEADANKFIKKFIFNNQINYRV-DEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDN 200 (403) T ss_pred e-ecCcceEEEEcCCceEEEEEecCceeecc-cceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 1 1111 12222222222222222222211 1222 44222 344444445588877777776655555555554444 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) -.+-.|||-.|+.++ ....+.+++-|. ..+.- +--+-=|+|+. + --++ T Consensus 201 g~~~~gil~~~~~l~----------------------~e~~~~~~~~~~----~~~~g--~~n~g~~~vl~--~--g~~~ 248 (403) T protein:vir:10 201 GTVIGLILETDEILN----------------------KKLRERKQEELQ----LDYNP--STGQSSVLILD--G--GMKA 248 (403) T ss_pred cCCcceEEEeCCCCC----------------------HHHHHHHHHHHH----HHhCC--cccCcceeecC--C--Ccee Confidence 444456666555443 112334444333 33321 11112233332 2 1245 Q ss_pred eeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) Q Consensus 315 khL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~L 393 (629) +.+.+.....+. -+++|+..+..||+.|.||| .|||-+ ++.+.-+....-++..|.|.+..|+++|++.+ T Consensus 249 ~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~---~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~~L----- 319 (403) T protein:vir:10 249 KPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQ-VLLDGG---NNANIRPNIELFYYMTIIPMLNKLTSSLTFFF----- 319 (403) T ss_pred EEecccCCHHHHHHHHHHHHHHHHHHHHhCCCH-HHcCCC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc----- Confidence 555554333343 38999999999999999999 677754 34456677788889999999999999999754 Q ss_pred HhcCCChhheEeeecCcccc-cCCCchHHH--H-HHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 394 MREGIDPNAYVVWHDASQLT-VDPDKTDEA--R-DAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPN 469 (629) Q Consensus 394 e~eG~d~~~yv~w~DaS~L~-~~Pd~t~eA--~-~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~ 469 (629) | |-|+||.+.+. .++|....+ + .+++.|++|.+++|.++|++.-+.. .+-. - T Consensus 320 ---~-----~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~-----~~d~-----------~ 375 (403) T protein:vir:10 320 ---G-----YKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDE-----QMNK-----------I 375 (403) T ss_pred ---C-----ceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCcc-----cccc-----------c Confidence 2 45788988763 345544333 3 3788999999999999999854211 1100 0 Q ss_pred hhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 470 LLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 470 Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) ++ |+= . .....+....++.+++.++ |++ T Consensus 376 ~~----p~n--~--------~~~~~~~~~~e~~~~~~~~--------~g~ 403 (403) T protein:vir:10 376 RI----PAN--V--------AGSATGVSGQEGGRPKGST--------EGD 403 (403) T ss_pred cc----ccc--c--------ccccccCCCCcCCCCCCCc--------CCC Confidence 00 000 0 0011111111122111111 111 No 43 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=99.57 E-value=3e-14 Score=94.73 Aligned_cols=482 Identities=13% Similarity=0.103 Sum_probs=233.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccch-------hHHHHHHHhhcchhhhhhhhhhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDW-------QEDAWKAYDAVGELRYYVGWRSS 73 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~W-------Q~eAW~~~d~VgELryyvgWr~~ 73 (629) |=--|.=|.-+=| .++.-+++ + .+.++ ..+..+| ..=| ++|...+-++-.|.=+++ T Consensus 1 ~~~~~~~~~~~~~-------~~~~~~~~---~--~~~~~----~~~~~~~~~pp~~~~~La-~~~~~n~~v~scI~~ia~ 63 (540) T protein:vir:41 1 MFNYHLSIKSLEK-------YRAIKGDT---D--SQALK----EDRFEEYVEPKVHPLVLL-SLLQVNPYHASACSIKAN 63 (540) T ss_pred CCCcccChhhccc-------hhhhhccc---c--ccccc----cCCCCccccCCCCHHHHH-HHHHhcHHHHHHHHHHHH Confidence 3333222111100 00111100 0 00000 0000011 1111 333344445556667778 Q ss_pred ceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCc Q lcl|Aclame:pro 74 SASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNG 153 (629) Q Consensus 74 s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~ 153 (629) .++.+-+..-. .+ +...+ .. ---..--.++++.++.++.+-|.+|+.++-...|. T Consensus 64 ~ia~~~~~i~~--~~-----~~~~~----------~l---pN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~----- 118 (540) T protein:vir:41 64 DILRTGYLIDG--DD-----GGVEE----------LL---RACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGE----- 118 (540) T ss_pred HHhcCCceEec--Cc-----cchhh----------hc---cCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCc----- Confidence 88887765421 11 11111 00 11112345789999999999999999886433332 Q ss_pred ccchhhheecHHHhccC-CCeeEEECCCCCCCccc-------------------CCCceEEEEeCCCcccccCCccchhh Q lcl|Aclame:pro 154 NPVPEWLALTPEEVRAS-EKKTIIELPTGDKHEFR-------------------DGLDGMFRVWNPRARRAREPDSPVRA 213 (629) Q Consensus 154 ~~~~eW~~vt~~eI~~~-~~~~~i~lP~g~~h~~~-------------------~~~D~~~RvW~P~Prra~eaDSPVRa 213 (629) ++ +.+.|..+-|+.. .+...+.+.+|....|. -..+-||++=+++|..-..--||+.+ T Consensus 119 -~~-~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~ 196 (540) T protein:vir:41 119 -PV-RLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLS 196 (540) T ss_pred -EE-EEEEeCCcceEEeEcCceeEeeecCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCcccccHHHH Confidence 11 2333444444422 11223333333222110 01233666645666666677899998 Q ss_pred hHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCc Q lcl|Aclame:pro 214 NLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDE 293 (629) Q Consensus 214 ~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De 293 (629) ++..+.-..-..+...+.-+.-..-.|||-+|..++=+.. ........+.++|-+.-..++.. T Consensus 197 ~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~----------------~~~~~~~~~~~~~~~~~~~~~~g- 259 (540) T protein:vir:41 197 AAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEME----------------LGSDGEPTGRTVLQGLIEDNFKY- 259 (540) T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhc----------------cchHHHHHHHHHHHHHHHHHhcc- Confidence 8887766655555554444444455678888877763221 11223334445554443344332 Q ss_pred cccccccceeeeechHHhcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhh Q lcl|Aclame:pro 294 DSMAALIPMFAAAPGELIKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVR 370 (629) Q Consensus 294 ~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~ 370 (629) -.-.+-.|+|++.|+.--++++...++....+. -+++|+..+..||..|.||| .+||+. ++.|..++-+....-.+ T Consensus 260 ~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp-~~lG~~~~~~~n~sn~eq~~~~f~~ 338 (540) T protein:vir:41 260 LKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDP-YRLGITDVGPLGGNFAEVARRTYYE 338 (540) T ss_pred ccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCH-HHcCcccCCCCCcccHHHHHHHHHH Confidence 123567889999988666666666665444333 47899999999999999999 778973 45788889999998889 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHh-CCCcccccC Q lcl|Aclame:pro 371 LHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKML-GLADDTVYD 449 (629) Q Consensus 371 ~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~-Gl~ed~~yd 449 (629) .-|.|.++.|++.|++.++.. .+ ..|-|.||.++|.. +|+....-.+++.|++|.+++|..+ |++..+ | T Consensus 339 ~tL~P~~~~ie~~ln~~L~~~----~~---~~~~i~f~~~~ll~-~D~~~~~~~lv~~G~lT~NE~Re~L~g~e~gd--d 408 (540) T protein:vir:41 339 SVVRPQQEIVSSVLTDFIQLK----LD---PGARFVFNEEILME-SEFVHNYALLVQCGVLTPSEVREKLFGLDGGP--D 408 (540) T ss_pred HHHHHHHHHHHHHHHHhhhhc----cC---CceEEEecchhhcc-hHHHHHHHHHHhCCCCCHHHHHHHhCcCcCCC--c Confidence 999999999999999865532 22 24778999999854 4654444457889999999999754 666432 2 Q ss_pred CCCHHHHHHHHHHHHhcCcchhh---hhhhhcccccCccCCCCCCCCCCCC-CCC-----CCCcCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 450 FTTPEGWAQWARDRVGQDPNLLP---TLAVLIPELADVEFPTPTVALPPAE-EQD-----GDEEASGASRREEPDTEDDA 520 (629) Q Consensus 450 ~tt~Eg~~q~a~d~v~~~P~Li~---~l~pll~~~~~~~~p~p~~a~~p~~-~~~-----~~~e~~~~~~~~ePdTe~d~ 520 (629) . -|.| ++..+.++......+++........ .++ -.++.+....+.+++.. T Consensus 409 ~------------------~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 467 (540) T protein:vir:41 409 M------------------FMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDKKKKIDEV--- 467 (540) T ss_pred c------------------cccccccccccccccccccCCCCccccccccchhcccccCcccccccccccccccccc--- Confidence 1 1111 1111222222212222211111100 000 00111111112222211 Q ss_pred CCCcccCCCCCchhHHHHHHHHHHHHHHhhc--cc-----CChhhHHHh--------cccc---hHhhhhhcCCCChhHH Q lcl|Aclame:pro 521 GTDDSDQASLDSRETAMVEALVFRALELAGK--RS-----RTRSLPYEL--------RQLS---DRELVRRLEPVRREHV 582 (629) Q Consensus 521 ~~d~~~~a~~~a~~~a~V~~lv~RALelAGk--R~-----r~r~~~ar~--------r~ip---~h~~hr~~~pv~~~~v 582 (629) ..+.. ..+.+..==.+-+.|++-.--. |. -.+....|. .|+- .|-+|+++ T Consensus 468 ---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 535 (540) T protein:vir:41 468 ---LSDFR-AEAYENGKKMLSIAGDMGTMSAINRGVSMIPPKPSNLEAYEDLLAASVDDIVERIRHYLYKVI-------- 535 (540) T ss_pred ---ccccC-CccccchhHHHHHhhhhhhhhhhhcCceecCCCCcchHHHHHHHHhhHHHHHHHHHHHHHHHh-------- Confidence 11110 0111111001222222221110 00 001111111 1111 23333333 Q ss_pred HHHHhhhhhh Q lcl|Aclame:pro 583 ADLIRGWDSM 592 (629) Q Consensus 583 ~rLi~Gwd~~ 592 (629) ||-.- T Consensus 536 -----~~~~~ 540 (540) T protein:vir:41 536 -----GWREL 540 (540) T ss_pred -----hhccC Confidence 33322 No 44 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=99.57 E-value=4.3e-15 Score=99.37 Aligned_cols=401 Identities=13% Similarity=0.119 Sum_probs=212.2 Q ss_pred CCCCcc------------eeEEcCCCCCC-CcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MAPTSL------------RIVRRPKSEPV-STRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYY 67 (629) Q Consensus 1 ma~t~l------------r~vr~pk~~~~-~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryy 67 (629) |--+.. |+--..++... .++...++ .++...+ +......+.++ | + .++-+.-. T Consensus 1 ~~~~~~~~~~~~~~g~~~~~~~~f~~~~~~~~~~~~~~---~~~~~~~--~~~~~~v~~~~-----a---l-~~~~v~~c 66 (424) T protein:vir:18 1 MEEPKYTIDLRTNNGWWARLKSWFVGGRLVTPNQGSQT---GPVSAHG--YLGDSSINDER-----I---L-QISTVWRC 66 (424) T ss_pred CCCCccccccCCCCchHHHHHhhccccccccccchhhc---ccccccc--ccccccccHHH-----h---h-ccHHHHHH Confidence 221111 11001111100 00111111 1221100 00000111111 1 1 23445667 Q ss_pred hhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCc Q lcl|Aclame:pro 68 VGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKS 147 (629) Q Consensus 68 vgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~ 147 (629) |.-+++++|.+.|..=+.+.|+|...-..+|+ +..+...=----+-..++++.+..+|-+-|++|+.+.--..| T Consensus 67 v~~Ia~~iA~lp~~vy~~~~~~~~~~~~~~~~------l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G 140 (424) T protein:vir:18 67 VSLISTLTACLPLDVFETDQNDNRKKVDLSNP------LARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAG 140 (424) T ss_pred HHHHHHhhccCceEEEEeccCCceeeeccccH------HHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC Confidence 78899999999999888888877655444453 555554333334455679999999999999999987522222 Q ss_pred ccccCcccchhhheecHHHhc--cCCCeeEEEC-CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhh Q lcl|Aclame:pro 148 RLDSNGNPVPEWLALTPEEVR--ASEKKTIIEL-PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRT 224 (629) Q Consensus 148 ~~d~~~~~~~eW~~vt~~eI~--~~~~~~~i~l-P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rt 224 (629) . ..+++.+.+..|. ..++....+. .+|....|. ..| ||++=.+.+ ....--||+..+.+.|.--.-. T Consensus 141 ~-------~~~L~~l~~~~v~v~~~~~~~~y~~~~~g~~~~~~-~~e-Vihir~~~~-dg~~G~spi~~~~~~i~~~~~~ 210 (424) T protein:vir:18 141 D-------VISLLPLQSANMDVKLVGKKVVYRYQRDSEYADFS-QKE-IFHLKGFGF-TGLVGLSPIAFACKSAGVAVAM 210 (424) T ss_pred c-------EEEEEEecCcceEEEEcCCeEEEEEEeCCeEEEec-ccc-EEEecCcCC-CCcccccHHHHHHHHHHHHHHH Confidence 2 1234444444433 3344333222 334333333 233 444412222 2234558887766555443334 Q ss_pred hHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceee Q lcl|Aclame:pro 225 TKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFA 304 (629) Q Consensus 225 tk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva 304 (629) .+...+..+.-..-.|||-+|+++. .....+.+.+.+.+.- .-+++ -=++|+ T Consensus 211 ~~~~~~~f~ng~~~~gil~~~~~~l---------------------~~e~~~~~~~~~~~~~----~~~na---g~~~vl 262 (424) T protein:vir:18 211 EDQQRDFFANGAKSPQILSTGEKVL---------------------TEQQRSQVEENFKEIA----GGPVK---KRLWIL 262 (424) T ss_pred HHHHHHHHhccCCcceEEEeCCcCC---------------------CHHHHHHHHHHHHHHh----CCccc---CCceec Confidence 4444443443344456777766542 1224555666665332 11222 113333 Q ss_pred eechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhH--hHHhhhhhhhhhhhHHHHHHH Q lcl|Aclame:pro 305 AAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSA--WQIGDEDVRLHILPPVEMLCE 382 (629) Q Consensus 305 ~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsA--w~i~de~v~~hI~P~~~~i~~ 382 (629) ++. .+++-|.+... +.--+++|+..+..||..|.||| .|||.-.++|.|++ -+....-++..|.|.++.|++ T Consensus 263 --~~g--~~~~~l~~~~~-d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~~~sn~eq~~~~f~~~tl~P~~~~ie~ 336 (424) T protein:vir:18 263 --EAG--FSTSAIGVTPQ-DAEMMASRKFQVSELARFFGVPP-HLVGDVEKSTSWGSGIEQQNLGFLQYTLQPYISRWEN 336 (424) T ss_pred --cCC--ceEEecCCChh-HHHHHHHHHHhHHHHHHHhCCCH-HHhCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 332 35666665432 22237899999999999999999 66787566777554 667777789999999999999 Q ss_pred HHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHH Q lcl|Aclame:pro 383 AITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQW 459 (629) Q Consensus 383 alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~ 459 (629) +|++.+|-+ .+. ..|.|.||.++|. +.|..+.+ ..+++.|++|.+++|++.|++.-.+=|. . +. T Consensus 337 ~ln~~L~~~----~~~--~~~~~~fd~~~ll-r~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~--~--~~-- 403 (424) T protein:vir:18 337 SIQRWLIPS----KDV--GRLHAEHNLDGLL-RGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDV--A--MR-- 403 (424) T ss_pred HHHhhcCCc----ccc--CCeEEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe--e--ee-- Confidence 999988765 233 2588999999983 34544443 4588999999999999999985322111 0 00 Q ss_pred HHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCC--CCCCcCCCC Q lcl|Aclame:pro 460 ARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQ--DGDEEASGA 508 (629) Q Consensus 460 a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~--~~~~e~~~~ 508 (629) +. ..-|.+.. .......+| T Consensus 404 ---------------------------~~---n~~~l~~~~~~~~~~~n~a 424 (424) T protein:vir:18 404 ---------------------------QA---QYVPITDLGTNKEPRNNGA 424 (424) T ss_pred ---------------------------cc---CccchhhhhccCCccccCC Confidence 00 00000000 000001111 No 45 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=99.56 E-value=2.4e-14 Score=95.22 Aligned_cols=408 Identities=15% Similarity=0.123 Sum_probs=216.3 Q ss_pred CCCC-cceeEEcCCCCCCCcccceeeecccccCc----ccchhhhh-ccCCcccchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPT-SLRIVRRPKSEPVSTRQRALVAASQPVEN----PGKAFRKA-MGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t-~lr~vr~pk~~~~~~r~r~l~aAsa~~~~----~~~~~kk~-~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) |--. -++.. .+++.+.+ .... -...+.++ ...+.. ..+ .++-+.-.+.-++++ T Consensus 1 m~~~~~~~~~-----------~~~~s~~~-~w~~~~~~~~~~~~~~g~~vt~~--------~al-~~~~v~~~i~~Ia~~ 59 (421) T protein:vir:10 1 MFIPQMFEGK-----------KRSVSGGG-FWEAMLGGVRSSHSKAGVMITPE--------TAL-ALSAVRACVTLLAES 59 (421) T ss_pred CCCcchhccc-----------ccccCcch-hhHHHhhhhccCcccCCceechH--------Hhh-ccHHHHHHHHHHHHh Confidence 2211 11111 11111100 0000 00000000 000000 111 355566688899999 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +|.+.+..=+.+.|++... ..++ .+..+...=-..-+-..++++.++.++-+-|++|+.+.--..|. T Consensus 60 iA~lp~~~~~~~~~g~~~~-~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~------ 126 (421) T protein:vir:10 60 VAQLPVELYRRDKNGGRQR-ATDH------PIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGY------ 126 (421) T ss_pred hccCceEEEEEcCCCceee-cccc------hHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCc------ Confidence 9999998888887744322 1122 24455543334455566799999999999999999885332332 Q ss_pred cchhhheecHHHhc--cCC-CeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 155 PVPEWLALTPEEVR--ASE-KKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 155 ~~~eW~~vt~~eI~--~~~-~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) +. +++.|.++.|. ... +.+......... .| ...+ ||++=.++ .....--||+..+.+.+.-..-..+...+. T Consensus 127 ~~-~L~~l~~~~v~v~~~~~g~~~y~~~~~g~-~~-~~~e-iih~~~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~ 201 (421) T protein:vir:10 127 PK-ELIPINPKKVIVLKGPDGMPYYEIPEIGE-TL-PMRM-MHHVKVFS-LDGYIGSSPIQTNADVLGLNLAVEEHASAV 201 (421) T ss_pred EE-EEEEecCceEEEEECCCceEEEEEcCCCc-EE-chhh-EEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 22 24444444333 222 223333332221 22 2233 44432222 233456788877777776666666666666 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHh Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i 311 (629) .+.-..-.|||-.|+.+. . .......+.+.+.+.+- +.--+.+-. ++|+ ++. T Consensus 202 f~ng~~~~gil~~~~~~~--~----------------~~~~e~~~~~~~~~~~~----~~g~~n~~~--~~vl--~~g-- 253 (421) T protein:vir:10 202 FRRGATMSGVIERPKEAP--A----------------IKSQEKIDQLLAKWTDR----YSGINNMFS--VALL--QEG-- 253 (421) T ss_pred HhcCCCccEEEEecCccC--c----------------cCCHHHHHHHHHHHHHH----hcCccccCc--ceec--CCC-- Confidence 565555667887776553 0 01223444555555432 221122212 2222 222 Q ss_pred cCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 KNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) Q Consensus 312 ~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr 390 (629) -+++.|.+ ...+.. +++|+..+..||..|.||| .|||+...+|..+.-+....=++..|.|.+..|+++|++.+|- T Consensus 254 ~~~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~t~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~ 330 (421) T protein:vir:10 254 MSYKQMSQ--DNEKAQLLQSRQWGVEEVCRLYKIPP-HMVQMLAKATNNNIEHQGLQFVMYTLLAWLKRHEGALQRDLLL 330 (421) T ss_pred ceEEecCC--ChhHHHHHHHHHHhHHHHHHHhCCCH-HHcCCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccC Confidence 24455544 334443 8899999999999999999 7789877889889888888889999999999999999998875 Q ss_pred HHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 391 TVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQD 467 (629) Q Consensus 391 ~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~ 467 (629) +. +. ..|.|-||.+.|.. .|..+.+ ..+++.|++|.+++|+++|++.-.+=|. - T Consensus 331 ~~---~~---~~~~v~fd~~~l~~-~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~-------~--------- 387 (421) T protein:vir:10 331 PS---ER---RDLYIEFNVSGLLR-GDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDK-------Y--------- 387 (421) T ss_pred cc---cc---CCeEEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce-------e--------- Confidence 52 21 24678899999843 4544444 3478899999999999999984322221 0 Q ss_pred cchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccC Q lcl|Aclame:pro 468 PNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQ 527 (629) Q Consensus 468 P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~ 527 (629) ++ |+- .....-+. +++.. ++.+++..+++-. .+| T Consensus 388 --~~----~~n--~~~~~~~~------~~~~~---------~~~~~~~e~d~~~---~~~ 421 (421) T protein:vir:10 388 --LT----PLN--MVDSAQII------PGDKK---------PTAQQMAEIDTIL---SRT 421 (421) T ss_pred --ee----ccc--cccccccc------cCCCC---------cccccCccccccc---ccC Confidence 00 000 00000000 11100 0011111111110 111 No 46 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=99.56 E-value=4.9e-15 Score=99.06 Aligned_cols=406 Identities=10% Similarity=0.047 Sum_probs=198.6 Q ss_pred cccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCC--------- Q lcl|Aclame:pro 46 TRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGG--------- 116 (629) Q Consensus 46 ~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG--------- 116 (629) .+ ++.+.-+-++=.|.=+++.++.+-|..=.-+...+. . . .+ .....+-.-+..- T Consensus 1 l~--------~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~-~-~-~~-----~~~~~~~~~l~~~~pn~~~~~~ 64 (467) T protein:vir:31 1 MA--------ELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDP-D-R-DG-----EQYERVWDFWFGDDSNWQVGPM 64 (467) T ss_pred Ch--------hhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccc-c-c-hh-----hhhhhHHHHhhccCCCccccch Confidence 11 233344556777788888998877654222211111 0 0 10 1111111112111 Q ss_pred ---hhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhccCCC-----------eeEEECC--- Q lcl|Aclame:pro 117 ---ALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRASEK-----------KTIIELP--- 179 (629) Q Consensus 117 ---~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~~~~-----------~~~i~lP--- 179 (629) ..-+.++++.+..++.+-|.+||.++-...|+. . +++.|-.+-|....+ ..-+..+ T Consensus 65 ~~~~~t~~~~~~~~~~~l~l~Gn~~i~~~r~~~G~~------~-~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~ 137 (467) T protein:vir:31 65 ESERATATNVLQTAWTDYEAIGWLTIEILTQTDGTP------T-GLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDR 137 (467) T ss_pred hhHhhHHHHHHHHHHHHHHhcCCeEEEEEECCCCcE------E-EEEEeCCceeEeeeecceeEeecCCceeeEEecccc Confidence 123568999999999999999998764333421 1 233333332221110 0000000 Q ss_pred -------------------CCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhh-- Q lcl|Aclame:pro 180 -------------------TGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIG-- 238 (629) Q Consensus 180 -------------------~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~g-- 238 (629) .+....... .+-||++=.++|..-..--||+.+++..+. +........++.+.+ T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~diih~r~~~~~~~~~G~s~~~~~~~~i~----~~~~~~~~~~~~f~ng~ 212 (467) T protein:vir:31 138 YQTNGNGDLDPVFVDADDGSTGTSVSNP-ANELIFKRNHSPLYPHYGAPDIIPAVKTIR----GDSAAQDYNIDFFENDG 212 (467) T ss_pred ceeecccceeeeeeeeccccccceeEec-cccEEEecCCCCCCCcccccHHHHHHHHHH----HHHHHHHHHHHHHhccC Confidence 001111112 233555556666666677899999877653 333333333333332 Q ss_pred --CceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhc----ccC-ccccccccceeeeechHHh Q lcl|Aclame:pro 239 --NGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTA----YDD-EDSMAALIPMFAAAPGELI 311 (629) Q Consensus 239 --nGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tA----i~D-e~S~AA~vPIva~vP~E~i 311 (629) .|||.++..+- + ....+.+.+.+..--..+ +.. ++...+--++++....+.. T Consensus 213 ~p~gil~~~~~~l--~-------------------~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~ 271 (467) T protein:vir:31 213 VPRIAIIVKGAEL--T-------------------EKGREEMRNLIEDNNEDNHRTAFIETEKIVQNEDYLNLADGADRS 271 (467) T ss_pred CCceEEEecCcCC--C-------------------HHHHHHHHHHHHhhhcchhhhhhhhhcccccccccccccCCCccc Confidence 35777764332 0 122334444443211111 111 1112222334444433322 Q ss_pred c-CceeEEe--CCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchh-hHhHHhhhhhhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 312 K-NVTHLKF--DNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHW-SAWQIGDEDVRLHILPPVEMLCEAITNQ 387 (629) Q Consensus 312 ~-~ikhL~f--~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nhw-sAw~i~de~v~~hI~P~~~~i~~alt~~ 387 (629) . .++-..+ .+..+---+++|+..+..||..|.||| .|||++.++|.. ++-++...-.+..|.|.+..|+++|++. T Consensus 272 ~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp-~~lG~~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~ 350 (467) T protein:vir:31 272 DVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPP-VIAGVVESGAFSTDAEEQRKEFAEETIQPKQHDFGELLYEL 350 (467) T ss_pred ccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCH-HHcccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 2 1222222 233344458999999999999999999 678986666653 4677777778889999999999999998 Q ss_pred HHHHHHHhcCCChhheEeeecCcccccCCCchHH--H-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 VLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDE--A-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRV 464 (629) Q Consensus 388 ~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~e--A-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v 464 (629) ++... .+...|-|-||.+.|..- |..+. + ..+++.|.+|.+++|++.|++.- .| + T Consensus 351 l~~~~-----~~~~~~~i~f~~~~l~~~-d~~~~~~~~~~~~~~G~~T~NE~R~~~Gl~pi--~d----~---------- 408 (467) T protein:vir:31 351 VHKQG-----LDAPDWTIEFELAKPDTK-LQDVEIASQRVQAMQGLLTVNELRDEFGFEPF--PE----E---------- 408 (467) T ss_pred hcchh-----hccCCceEEEecchhhcc-CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--Cc----c---------- Confidence 87653 333557778899888633 33222 2 44889999999999999999732 11 0 Q ss_pred hcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCc Q lcl|Aclame:pro 465 GQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDS 532 (629) Q Consensus 465 ~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a 532 (629) .+.+ ..+++........|..+....+.+..++..+...+.-+++-+||+. .+..+.|- + T Consensus 409 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~ 467 (467) T protein:vir:31 409 ----HVYG-GETLVAEVTGGSGPGGGIGDQIEQLVEDRADEIIDSYQADLETEQL--IEIGANAD--S 467 (467) T ss_pred ----cccC-CcccccccccccCCCCcccCcCCCCCCCcccchHhhhhhccccchh--hhhccccC--C Confidence 0100 0111111122222222221111111111111111111222222211 11111111 1 No 47 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=99.55 E-value=2.9e-15 Score=100.30 Aligned_cols=363 Identities=14% Similarity=0.145 Sum_probs=195.7 Q ss_pred CCCCc----------------ceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHH-----HHh Q lcl|Aclame:pro 1 MAPTS----------------LRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWK-----AYD 59 (629) Q Consensus 1 ma~t~----------------lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~-----~~d 59 (629) -+++. +=..++|.. ++..|.-.+.+.+. +++. ...|...++. -+- T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------------~~g~-~~~~~~~~~~~~t~~~~~ 76 (409) T protein:vir:83 11 PSIPDLPNDNGPVDYNPGDPDMVEFRGPEE-EPEARALPWIRPTA------------WSGY-PESWATPSWGSAQDKLRT 76 (409) T ss_pred ccCCCcccccccccccCCCCceeeccCCCc-chhhhhcccccccc------------cccc-cccccccCccccchhhHh Confidence 11111 222445443 22222111111110 0000 0112221111 111 Q ss_pred hcchhhhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEE Q lcl|Aclame:pro 60 AVGELRYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWV 139 (629) Q Consensus 60 ~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI 139 (629) .++-+.-.|.=+++++|.+.|+.-+ + |.. .+ ....+.+.--.--+-..++++.+..||.+ |..|+ T Consensus 77 ~~~~v~acV~~Ia~~iA~lpl~~~~---~-~~~----~~------~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~ 141 (409) T protein:vir:83 77 LIDVAWACIDLNASVLSSMPIYRMR---N-GRI----ID------SVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFV 141 (409) T ss_pred hhHHHHHHHHHHHHhhccCceEEee---C-Ccc----cc------chhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEE Confidence 3445555677889999998776543 1 221 11 11112222122224567899999999988 99998 Q ss_pred EEEEcCCcccccCcccchhhheecHHHhccCCCeeEEEC-CCCCCCccc---CCCceEEEEeCCCcccccCCccchhhhH Q lcl|Aclame:pro 140 AILFTDKSRLDSNGNPVPEWLALTPEEVRASEKKTIIEL-PTGDKHEFR---DGLDGMFRVWNPRARRAREPDSPVRANL 215 (629) Q Consensus 140 ~il~r~~~~~d~~~~~~~eW~~vt~~eI~~~~~~~~i~l-P~g~~h~~~---~~~D~~~RvW~P~Prra~eaDSPVRa~l 215 (629) .++.|+.. |.++ +.+.|.++.|. +++ .+|...+.. ...|-||++=..++..-..--||+.++. T Consensus 142 ~~i~r~~~-----G~~~-~L~pl~p~~v~-------v~~~~~g~~~y~~~~~~~~~eiiHir~~~~~~~~~G~spi~~~~ 208 (409) T protein:vir:83 142 LPMAHGSD-----GYPI-RFRVVPPWLVN-------VELKKGARREYRIGGLNVTDEILHIRYQGNTADAHGHGPLESAA 208 (409) T ss_pred EEEEECCC-----CcEE-EEEEECCcceE-------EEEcCCceEEEEEccccCccceEEeCCCCCCCCcccccHHHHHH Confidence 87766432 1111 24444443321 111 122211111 1245576663333333334557766554 Q ss_pred HHHHHHHhhhHHHHHHHHhHhhhCce-----eeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 216 DSLKEIVRTTKTIANASKSRLIGNGV-----VFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAY 290 (629) Q Consensus 216 d~LrEI~rttk~I~naa~SRL~gnGv-----lfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi 290 (629) . .+.+....... ..++..||. |-+|+.++ ....+.|.+-+.+ ++ T Consensus 209 ~----~i~~~~a~~~~-~~~~f~nga~p~gil~~~~~ls----------------------~e~~~~~~~~~~~----~~ 257 (409) T protein:vir:83 209 P----RQVVIGLLQKY-VQNLAETGGVPLYWLGVERRLS----------------------ETEAVDLMDRWIE----SR 257 (409) T ss_pred H----HHHHHHHHHHH-HHHHHhcCCCcceEeecCCCCC----------------------HHHHHHHHHHHHH----hh Confidence 4 44444443332 345555554 33333222 2234455555542 22 Q ss_pred cCccccccccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhh---HhHHhhh Q lcl|Aclame:pro 291 DDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWS---AWQIGDE 367 (629) Q Consensus 291 ~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nhws---Aw~i~de 367 (629) .+ .+-=|+|+.-- .+..|-+.+... +---+++|+..++.||..|.||| .|||+..+.|.|| .-+.... T Consensus 258 ~~----nag~~~il~~g---~~~~~~~~~s~~-d~q~le~r~~~~~eIa~~fgVPp-~llg~~~~~~~~tysn~eq~~~~ 328 (409) T protein:vir:83 258 SK----YAGHPALVTGG---ATLNQAKSMSAQ-DLSLMELTQFNEARIAILLGVPP-FLVGLPGATGSLTYSNIEQLFSF 328 (409) T ss_pred CC----ccCccceecCC---cccccccCCCHH-HHHHHHHHHhhHHHHHHHhCCCH-HHccCCCCccccccccHHHHHHH Confidence 22 22334454322 222233444322 22247899999999999999999 9999865667665 7888888 Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCc Q lcl|Aclame:pro 368 DVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLAD 444 (629) Q Consensus 368 ~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~e 444 (629) -++..|.|.+..|+++|++.+|.. .+| |-||.+.|. ++|..+.+ ..+++.|.+|.+++|+..||+- T Consensus 329 f~~~tL~P~~~~ie~~l~~~Ll~~---------~~~-~~f~~~~ll-r~d~~~r~~~~~~~~~~G~lT~NE~R~~~glpp 397 (409) T protein:vir:83 329 HDRSSLRPKATAVMAALDRWALPS---------PQH-LELNRDDYT-RPSLVERATAYKIMIEAGVMEPNEARAMERLHS 397 (409) T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC---------CcE-EEeehhhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Confidence 899999999999999999987743 234 678888874 33444433 3477889999999999999999 Q ss_pred ccccCCCCHHHH Q lcl|Aclame:pro 445 DTVYDFTTPEGW 456 (629) Q Consensus 445 d~~yd~tt~Eg~ 456 (629) .+|-|--|--|. T Consensus 398 ~~ggd~l~~~gv 409 (409) T protein:vir:83 398 EAAAVRLSGGGV 409 (409) T ss_pred CCCCcccCCCCC Confidence 888875444333 No 48 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=99.55 E-value=2.5e-14 Score=95.15 Aligned_cols=408 Identities=13% Similarity=0.086 Sum_probs=215.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccc-hh----HHHHHHHhhcchhhhhhhhhhhce Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTD-WQ----EDAWKAYDAVGELRYYVGWRSSSA 75 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~-WQ----~eAW~~~d~VgELryyvgWr~~s~ 75 (629) |-=. |++....... .+. .+. +.....+...+. +. ..|. .++-+.-.|.-++++| T Consensus 1 ~~~~-----r~~~~~~~~~---~~~-------~~~--~~~~~~g~~~s~~~~~vt~~~al----~~~~v~~~v~~ia~~i 59 (419) T protein:vir:14 1 MFFS-----RQLLSNLGQT---QMS-------AGG--WVSALLGSSRSDSGQVVTPASAL----ALTVLQNCVTLLAESI 59 (419) T ss_pred Cccc-----cccccccccc---ccC-------cch--hhHHhhcCCCccCCcccchHHhh----ccHHHHHHHHHHHHhh Confidence 2211 1111111000 000 000 000111111111 00 1121 2444666788899999 Q ss_pred eeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCccc Q lcl|Aclame:pro 76 SRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNP 155 (629) Q Consensus 76 Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~ 155 (629) |.+.|..-+.+.++..+- .++ -+..+...=-.--+-..++++.++.+|-+-|++|+.+.--..|. + T Consensus 60 A~lp~~~~~~~~~~~~~~--~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~------~ 125 (419) T protein:vir:14 60 AQLPIELYERSGEDRKPA--TDH------PLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGV------I 125 (419) T ss_pred ccCceEEEEecCCccccc--ccc------HHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc------E Confidence 999999888776632221 122 34555554344456677899999999999999998875222232 1 Q ss_pred chhhheecHHHhc--cCCCe-eEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 156 VPEWLALTPEEVR--ASEKK-TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 156 ~~eW~~vt~~eI~--~~~~~-~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) ..++.|.++.|. ..+++ .....- |+. .| ..+.|+++=.+ +..-..-.||+..+...+.-.....+...+.. T Consensus 126 -~~l~pl~~~~v~v~~~~~~~~~y~~~-~~~-~~--~~~~i~h~~~~-~~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f 199 (419) T protein:vir:14 126 -QGLYPLDNEAVTVMRGSDLKPVYRVR-GSD-PM--PQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSF 199 (419) T ss_pred -EEEEEecCceEEEEECCCceEEEEEc-cCc-cc--chhheeEecCc-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 124444444433 22222 222211 111 11 12334333222 22334566888877777766666666666666 Q ss_pred HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhc Q lcl|Aclame:pro 233 KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIK 312 (629) Q Consensus 233 ~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~ 312 (629) +.-..-.|||-+|+.+.- .......+.|.+.+-+ .+.-.+. |--++|+ ++. - T Consensus 200 ~ng~~p~gil~~~~~~~~------------------~~~~~~~~~~~~~~~~----~~~g~~n--ag~~~vl--~~g--~ 251 (419) T protein:vir:14 200 MNGTALSGVIERPKDAPA------------------LKDQASVDRITDGWNA----KFGGSGN--AKKVALL--QEG--M 251 (419) T ss_pred hccCCccEEEEecCCCCc------------------ccCHHHHHHHHHHHHH----HhcCccc--cCCceec--CCC--c Confidence 666666788877765531 1112244555555542 2222222 2222332 221 2 Q ss_pred CceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 NVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTV 392 (629) Q Consensus 313 ~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~ 392 (629) +++-|.+. ..+.--+++|+-.+..||..|.||| .+||.+.++|..++-+....-++..|.|.+..|+++|++.+|.+. T Consensus 252 ~~~~l~~~-~~d~q~~e~~~~~~~~Ia~~fgVpp-~~lg~~~~~t~s~~E~~~~~f~~~~L~P~~~~ie~~l~~kll~~~ 329 (419) T protein:vir:14 252 TFRPLSMT-NVDAALIDALRLSALDIARIYKIPA-HMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPS 329 (419) T ss_pred eEEEccCC-hhhHHHHHHHHHHHHHHHHHhCCCH-HHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcc Confidence 55556553 2344457899999999999999999 667776678888888888888999999999999999999887653 Q ss_pred HHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcc Q lcl|Aclame:pro 393 LMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPN 469 (629) Q Consensus 393 Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~ 469 (629) - . ..|.|.||.+.|. ++|..+.+ ..+++.|.+|.+++|+++|++.-.+=|. - T Consensus 330 ~---~---~~~~i~fd~~~l~-r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~------------------~ 384 (419) T protein:vir:14 330 E---R---KQYFIEYNLAGLL-RGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI------------------Y 384 (419) T ss_pred c---c---CCeEEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe------------------e Confidence 2 1 2588999999984 34544443 3388899999999999999985433221 0 Q ss_pred hhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHH Q lcl|Aclame:pro 470 LLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETA 536 (629) Q Consensus 470 Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a 536 (629) ++ | ....+...... .|+.++++..+..+.... .++ T Consensus 385 ~~---------------~--~n~~~~~~~~~------------~~~~~~~~~~~~~~e~~~---~l~ 419 (419) T protein:vir:14 385 LS---------------P--MNMVDASKPQQ------------LPVGKSEPTKAAIDEIGR---ILS 419 (419) T ss_pred ee---------------c--ccccccccccc------------ccCCCCCCccccccchhc---ccC Confidence 00 0 00000000000 000000000000000000 000 No 49 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=99.54 E-value=4e-14 Score=94.07 Aligned_cols=387 Identities=13% Similarity=0.132 Sum_probs=198.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |. +.++.|.+.- +..++++. +..-+.++....+ --....+ .++-+.-.|.-+++++|.+.+ T Consensus 1 M~-----~f~~~~~~~~----------~~~~~~~~--~~~~~~~~~~~~~-v~~~~al-~~~~V~~~v~~ia~~ia~~p~ 61 (397) T protein:vir:38 1 MP-----LLKLNKSHSQ----------GFSLNDPD--WVNFLTGGEAQKY-VSADTAL-KNSDIFSLIMQLSGDLAMVRY 61 (397) T ss_pred Cc-----chhhhhcccC----------cccCCchh--hhhhhcCCcCCce-echHHhh-ccHHHHHHHHHHHHHHhhCcc Confidence 32 2333322210 11112211 1111111111000 0111223 366777788899999999987 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) -. ++ .....+-...- --+-..++++.++.+|.+-|++||.++--..|. +. .++ T Consensus 62 ~~--------------~~-----~~~~~l~~~PN-~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~------~~-~l~ 114 (397) T protein:vir:38 62 TS--------------ES-----DRSQSIISNPS-VTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGV------DL-SWE 114 (397) T ss_pred cc--------------cc-----cHHHHHHhcCC-CCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCc------EE-EEE Confidence 31 12 12334444332 245677999999999999999999886433332 11 244 Q ss_pred eecHHHhc--c--CCCeeE--EECCC--CCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 161 ALTPEEVR--A--SEKKTI--IELPT--GDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 161 ~vt~~eI~--~--~~~~~~--i~lP~--g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) .|..+.|. . +++.+. +.... +......+..| ||++=.+.+.--..--||+.+++..+.-..-..+...+.. T Consensus 115 ~l~~~~v~i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~e-iih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f 193 (397) T protein:vir:38 115 YLRPSQVQPMLLQDGSGLIYNINFDEPAIGYMENVPAAD-VIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKAL 193 (397) T ss_pred EEcCceeEEEEcCCCceEEEEEEeccccccceeEecCcc-EEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 44444332 1 222222 22222 11111122334 4444344444434567888888877766666666666666 Q ss_pred HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhc Q lcl|Aclame:pro 233 KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIK 312 (629) Q Consensus 233 ~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~ 312 (629) +.-.+..|||-+|+.++ ....+.+.+.+-.. ...++.+ -|+|+ + . T Consensus 194 ~ng~~~~~il~~~~~~~----------------------~e~~~~~~~~~~~~--~~~~n~~-----~~~vl--~----~ 238 (397) T protein:vir:38 194 KQSVTASAVLTIQKGGL----------------------LDAETRIARSKEIS--KQIHNSD-----GPVVI--D----A 238 (397) T ss_pred hccCCccEEEEeCCCCC----------------------HHHHHHHHHHHHHH--hcccccC-----Cceec--C----C Confidence 66666778887776543 11234444444321 1222222 24443 2 3 Q ss_pred CceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 NVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 313 ~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) +++.-.++....+.. +++|+..+..||.+|.||| .+||...++|.+.. +. ...++..|.|.+..|+++|++.++.. T Consensus 239 g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~-~~lg~~~~~~~~~e-~~-~~~~~~~l~P~~~~ie~~ln~~l~~~ 315 (397) T protein:vir:38 239 LEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPD-SYLNGQGDQQSSIT-QI-SGQYAKSLNRYVQAIVGELNDKLHAN 315 (397) T ss_pred CceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCcccHHH-HH-HHHHHHHHHHHHHHHHHHHHHhccCh Confidence 456666655555555 8899999999999999999 56665445554333 33 44677789999999999999887754 Q ss_pred HHHhcCCChhheEeeecCcccccCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 392 VLMREGIDPNAYVVWHDASQLTVDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 392 ~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) .+|-+.+. |..|+....++ ..+++.|++|.+++|+++|+..-.+-|+-..+ T Consensus 316 ---------~~~~~~~~---~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~---------------- 367 (397) T protein:vir:38 316 ---------ISANIRFA---IDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPE---------------- 367 (397) T ss_pred ---------hccccccc---ccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccccc---------------- Confidence 22322222 12222222222 45889999999999999998643222211000 Q ss_pred hhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCC Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPD 515 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePd 515 (629) ..+.+........+.+. ++..+.+.+++|+ T Consensus 368 --------------~~~~~~~~~~~~~~g~~-~~~~~~e~~~~~~ 397 (397) T protein:vir:38 368 --------------KEPQQAIQLIQQEGGEN-DGNNSDERGSDPE 397 (397) T ss_pred --------------ccccccccccccccCCC-CCCCCCCCCCCCC Confidence 00111111111111111 1111122233333 No 50 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=99.53 E-value=8.3e-13 Score=86.82 Aligned_cols=531 Identities=14% Similarity=0.118 Sum_probs=232.3 Q ss_pred CCCCc--------ce-eEEcCCCCCCCc---ccceeeecccc-----------cCcccchhhhh------ccCCcccchh Q lcl|Aclame:pro 1 MAPTS--------LR-IVRRPKSEPVST---RQRALVAASQP-----------VENPGKAFRKA------MGSSTRTDWQ 51 (629) Q Consensus 1 ma~t~--------lr-~vr~pk~~~~~~---r~r~l~aAsa~-----------~~~~~~~~kk~------~~~~~~~~WQ 51 (629) ||-.- +| .-|.|.+---++ -.-.|.+|.+. ..+|.....|. .++....+|. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~ 80 (648) T protein:vir:79 1 MARKVWGRGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFE 80 (648) T ss_pred CccchhcchhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccc Confidence 32210 00 012222211000 00111111111 23333322211 1111122232 Q ss_pred ------HHHHHHHhhcchhhhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHH Q lcl|Aclame:pro 52 ------EDAWKAYDAVGELRYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIK 125 (629) Q Consensus 52 ------~eAW~~~d~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlk 125 (629) .+..+.|..-+-++-.|.-++++++++-++... +.+.+ +++. ....+.....-. ....++++ T Consensus 81 epp~d~~~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~---~~~~~---~~~~-----~~~~ll~rPn~~-~t~~~f~~ 148 (648) T protein:vir:79 81 EPEFDFNEITSAYNTEGYVRQAVDKYIEMMFKADWDFVS---KNPNA---VEYI-----RMRFTLMAEATQ-IPTNQLFI 148 (648) T ss_pred cCCcCHHHHHHHHhcChHHHHHHHHHHHHHhhCcceEEe---cCCcc---chhh-----HHHHHhhccCCC-CCHHHHHH Confidence 234577888888888999999999998876522 22222 2221 111122222222 34468999 Q ss_pred HHhcceeecCceEEEEEEcCCccc-cc-------CcccchhhheecHHHhccC----CCe--eEEECCCCCCCcccCCCc Q lcl|Aclame:pro 126 RVVEQLTVAGETWVAILFTDKSRL-DS-------NGNPVPEWLALTPEEVRAS----EKK--TIIELPTGDKHEFRDGLD 191 (629) Q Consensus 126 r~~~~LtVpGE~wI~il~r~~~~~-d~-------~~~~~~eW~~vt~~eI~~~----~~~--~~i~lP~g~~h~~~~~~D 191 (629) .+..++-+-|.+|+.++--..+.. .+ ....+...+-|..+-|... |.. -...-+.|.+....+ .+ T Consensus 149 ~l~~~lll~GNAYveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~-~~ 227 (648) T protein:vir:79 149 EIAEDLVKYCNVVIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQEGQDKPQKFK-PE 227 (648) T ss_pred HHHHHHHhcCCeEEEEEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEecCCceeEEec-Cc Confidence 999999999999998764433311 00 0001111112222222211 100 011112222211112 23 Q ss_pred eEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCC Q lcl|Aclame:pro 192 GMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILG 271 (629) Q Consensus 192 ~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~ 271 (629) -||++...++..-..--||+.+|.+.|.-.....+.-.+--+.=....|||.++.+.. . T Consensus 228 dIIHik~~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~---------------------~ 286 (648) T protein:vir:79 228 DIVHIYYKREKGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLEQE---------------------G 286 (648) T ss_pred cEEEEccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCcc---------------------c Confidence 3677765555555567789888887775544444433332222233345555432111 1 Q ss_pred chhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCch--hHH-HHHHHHHHHHHHhhhccCchHH Q lcl|Aclame:pro 272 TPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQV--TEV-AIKTRNDAIARLAMGLDVSPER 348 (629) Q Consensus 272 ~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dv--te~-aiktR~daIrrlA~~lD~~pE~ 348 (629) ....+.+++-+.+ +++- ++ +.. ...+.+.+.|.... .+. -+++|+..+..||..|.||| . T Consensus 287 ~e~~k~~~e~~~~----~~~~-------~~-i~g----g~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP-~ 349 (648) T protein:vir:79 287 FGAEEGEVDLVRG----EVEN-------MD-VEG----GMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSE-L 349 (648) T ss_pred hHHHHHHHHHHHH----hccc-------cc-ccc----cccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCH-h Confidence 1122334443332 2211 01 111 11122333332211 222 47789999999999999999 7 Q ss_pred hhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChh---heEeeecCcccccCCCch--HHHH Q lcl|Aclame:pro 349 LLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPN---AYVVWHDASQLTVDPDKT--DEAR 423 (629) Q Consensus 349 LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~---~yv~w~DaS~L~~~Pd~t--~eA~ 423 (629) +||+..++|..++.+. ...++..|.|....++..+...+++..|-..++++. .|-+.||.++|...-.++ +... T Consensus 350 lLG~~~~ss~stae~~-~~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~ 428 (648) T protein:vir:79 350 MMGRGGTASRSTGDNL-SSDFKDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAV 428 (648) T ss_pred HcccCCCccchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHHHHHH Confidence 8899878888888665 445777899999999999998888888766666542 345567778876552222 2235 Q ss_pred HHHHcCCCCHHHHHHHhCCCcc-cccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 424 DAFDRGAITAEAMVKMLGLADD-TVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGD 502 (629) Q Consensus 424 ~~~~~G~it~ealr~~~Gl~ed-~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~ 502 (629) .+++.|++|.+++|++.|++-- .+.+- +.+..++- ++ ...-++..++..|..+...+ T Consensus 429 ~l~~~GilT~NEaR~~lGlpPi~~g~~~-----------~~l~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~ 486 (648) T protein:vir:79 429 FLYEHNAISEDEMRELIGRDPVDDGEGR-----------AKMHLQMV------TI-----AQATALAALAPTPAGGSSAS 486 (648) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCCCCc-----------cccccccc------cc-----hhccccccCCCCCCCCCCCC Confidence 6789999999999999999632 22210 01111110 00 00111112222222222333 Q ss_pred CcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHHHhcccchHhhhhhcCCCChhHH Q lcl|Aclame:pro 503 EEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPYELRQLSDRELVRRLEPVRREHV 582 (629) Q Consensus 503 ~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~ar~r~ip~h~~hr~~~pv~~~~v 582 (629) ...++...+++.+|.++......++........ -|..|---.|+-- ...+.-.--..+||.+ T Consensus 487 a~~eg~~~e~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~--------- 548 (648) T protein:vir:79 487 ASGDKKKKATDNKTKPTNQHGTKTSPKKQTNGR-HVRYMQEMLLEYT--------TLNEAIKALIERYYQY--------- 548 (648) T ss_pred ccccccccccCCCCCCCCCCCcCCCCccccchh-hhhhhhhhhhcch--------hhhHHHhhHHHHHHHH--------- Confidence 333444444444444332111111111000000 1111111111110 0000000001223332 Q ss_pred HHHHhhhhhhhhHHHHHHhCCCHHHHHHHHHHHHHH-------------------HHhhh---hccc--cC Q lcl|Aclame:pro 583 ADLIRGWDSMLEERAVQALNMNIPGIRAAVKRAVYG-------------------ELTKT---IDGE--VS 629 (629) Q Consensus 583 ~rLi~Gwd~~ld~~~~a~lG~D~~~lr~~v~~~v~~-------------------~lt~~---vd~~--v~ 629 (629) ||...|- .+...+-+-+..++.....|.-+ .+-.+ |+|- -| T Consensus 549 -----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (648) T protein:vir:79 549 -----GSKEHLK-SINGSLMYTEGRLLELTTQYWGEEVTEKVRIPFHRMTENLREEVMSTIDKVEGVAEAS 613 (648) T ss_pred -----hHHHHHH-hhhhhheeccchhHHHHHHHhhhhhhceeeeeHHHHHHHHHHHHHhhhhhhhhhHHHH Confidence 3333332 33333333222222222222111 11111 1111 01 No 51 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=99.52 E-value=3.7e-14 Score=94.25 Aligned_cols=403 Identities=14% Similarity=0.099 Sum_probs=208.3 Q ss_pred CCCC-cceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPT-SLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t-~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |.-- .-+++.|.|..-.. +....-+..+.++..-..++..+. ..+-+-.++-+.-.+.-++++||.+. T Consensus 1 m~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v--------~~~~a~~~~~v~~~i~~ia~~iA~lp 69 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLID---NWIDQSTSKLYDFSPWKNRSFWGV--------INNTLETNETIFSAITKLSNSMASLP 69 (412) T ss_pred CccchhhhhhhhhhhhHhh---hhhcccccccccccccCCcccccc--------chhhhhccHHHHHHHHHHHHhHhhCc Confidence 3322 12333333321100 000000111111111111111100 11223355666667788999999998 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..-+-+. ..++ .+..+...=.---+-..++++.++.+|.+=|++|+.+.--..| . ..++ T Consensus 70 ~~~~~~~~-------~~~~------~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G------~-~~~L 129 (412) T protein:vir:26 70 LKMYEDYK-------VVNT------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH------Q-PSKL 129 (412) T ss_pred eeEeeccc-------cccc------hHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCC------c-EEEE Confidence 87755331 1223 2455554333344567799999999999999999987532233 2 1245 Q ss_pred heecHHHhcc--C--CCee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 160 LALTPEEVRA--S--EKKT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) Q Consensus 160 ~~vt~~eI~~--~--~~~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~ 233 (629) +.|..+.|.. . ++.. .+....|....|. ..| ||++=++++..-..--||+.++...+.=...+.+. +..+ T Consensus 130 ~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~-~~e-vih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~--~~~~ 205 (412) T protein:vir:26 130 FLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH-NMD-MLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF--NLTE 205 (412) T ss_pred EEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEc-ccc-EEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHH--HHHh Confidence 6665555442 1 2222 3445555544433 233 55554555555555678877665544322222111 2222 Q ss_pred hHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcC Q lcl|Aclame:pro 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) Q Consensus 234 SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ 313 (629) ....+.||+-.++.++ ....+.+.+.|.+. ++..+ - ++|+ ++. -+ T Consensus 206 ~~~~~~~i~~~~~~l~----------------------~e~~~~~~~~~~~~----~~~~g----~-~~vl--~~g--~~ 250 (412) T protein:vir:26 206 MQKPDSFMLKYGSNVG----------------------KEKRQQVLEDFKQY----YEENG----G-ILFQ--EPG--VE 250 (412) T ss_pred cCCCCceEEecCCCCC----------------------HHHHHHHHHHHHHH----hhcCC----C-eeec--CCC--ce Confidence 2222333433333222 12334455555432 22111 1 2222 221 24 Q ss_pred ceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 VTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) Q Consensus 314 ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~L 393 (629) ++.|.+... +.--+++|+-.+..||..|.||| .|||.+.++|..++.+....-++..|.|.+..|+++|++.+|-+. T Consensus 251 ~~~l~~~~~-d~q~~e~~~~~~~~Ia~afgVPp-~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~- 327 (412) T protein:vir:26 251 IEPLPKKYV-SEDIVASENLTRERVANVFQLPS-VFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT- 327 (412) T ss_pred EEEcCCChh-HHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc- Confidence 555544322 22348899999999999999999 677877888999999999999999999999999999999887542 Q ss_pred HhcCCChhheEeeecCccccc-CCCc-hHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchh Q lcl|Aclame:pro 394 MREGIDPNAYVVWHDASQLTV-DPDK-TDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) Q Consensus 394 e~eG~d~~~yv~w~DaS~L~~-~Pd~-t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li 471 (629) ++. ..|.|-||.+.|.. |+.. .+....++..|++|.+++|+++|++.-.+=|. - ++ T Consensus 328 ---~~~-~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~-------~-----------~~ 385 (412) T protein:vir:26 328 ---DRE-KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDK-------P-----------LI 385 (412) T ss_pred ---ccc-CcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe-------e-----------ee Confidence 221 24668899999743 3222 22234588999999999999999975422221 0 00 Q ss_pred hhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC Q lcl|Aclame:pro 472 PTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTED 518 (629) Q Consensus 472 ~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~ 518 (629) + ....+++.+ ...+.....+|. -..|. T Consensus 386 ~------~n~~~~~~~------~~~~~~~~gG~~--------n~~e~ 412 (412) T protein:vir:26 386 S------GDLYPIDTP------LELRKSLKGGDK--------NVNES 412 (412) T ss_pred c------ccccccccc------hhhcccccCCCC--------CcCCC Confidence 0 011111111 000000111111 00010 No 52 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=99.50 E-value=6.6e-14 Score=92.86 Aligned_cols=393 Identities=12% Similarity=0.073 Sum_probs=211.4 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcc--cchhHHHHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTR--TDWQEDAWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~--~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |- .+++......+ +..+...+-.-.+.+.. .-+...|. ...-++-.+.-+++.+|++ T Consensus 1 m~------f~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~v~~~~al----~~~~v~~~i~~ia~~ia~l 59 (409) T protein:vir:10 1 ML------FRKGFKNQSQE-----------ISIDDKKILEWLGINPSETYVNGKSCL----KQATVFGCIRILSDNISKL 59 (409) T ss_pred Cc------ccccccCcCCC-----------CCCChHHHHHHhcCCcCcceechhhhh----ccHHHHHHHHHHHHhhhhC Confidence 32 23333222222 11111111111111110 00111222 2344566677889999998 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .+..=+-+ |.++.. .++ .+..+.+.-----+-..++++.++.++-+-|++|+.+.--..|.. .+ T Consensus 60 p~~~~~~~-~~~~~~--~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~-------~~ 123 (409) T protein:vir:10 60 PIKIYQKK-DGIKRV--PDH------YLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEI-------KG 123 (409) T ss_pred ceEEEEec-CCeeec--cCc------hHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcE-------EE Confidence 77554422 423321 112 345555432333445567999999999999999999864333321 12 Q ss_pred hheecHHHhccC---------CCee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHH Q lcl|Aclame:pro 159 WLALTPEEVRAS---------EKKT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKT 227 (629) Q Consensus 159 W~~vt~~eI~~~---------~~~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~ 227 (629) ++.+-.+.|... ..++ .+..+.|...+|.. .| ||++=++++. ...--||+.++.+.+....-+.+. T Consensus 124 L~~i~~~~V~v~~~~~~~~~~~~~~~y~~~~~~g~~~~~~~-~e-vih~r~~~~d-~~~G~s~i~~~~~~i~~~~~~~~~ 200 (409) T protein:vir:10 124 LYPLKSDGMKIFVDDTGLLNSENNVWYLYTDDLGQRHKFMS-DE-ILHFKGLTAD-GLAGLSVIELLNHLIENGKSSETY 200 (409) T ss_pred EEEEcCCceEEEEcCCccccccceEEEEEEeCCceeEEecc-cc-EEEecCcCCC-CcccccHHHHHHHHHHHHHHHHHH Confidence 334433333211 1111 12233344333322 23 4444233332 234568887777776665555555 Q ss_pred HHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeec Q lcl|Aclame:pro 228 IANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAP 307 (629) Q Consensus 228 I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP 307 (629) ..+..+.-..-.|||-+|+.++ ....+.+.+.|.+.-. ..++ +--++|+ + T Consensus 201 ~~~~f~ng~~~~gil~~~~~l~----------------------~e~~~~~~~~~~~~~~-g~~n-----~~~~~vl--~ 250 (409) T protein:vir:10 201 LNNFFKNGLQVKGLVQYAGDLN----------------------PEAEEVFKENFERMSS-GLKN-----AHRIAML--P 250 (409) T ss_pred HHHHHhccCCCcEEEEcCCCCC----------------------HHHHHHHHHHHHHHhc-cccc-----cCCceec--C Confidence 5555555555567776665433 1234556665543211 1122 1223333 3 Q ss_pred hHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 308 GELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQ 387 (629) Q Consensus 308 ~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~ 387 (629) +. -+++-|.+...-.+ -+++|+..+..||..|.||| .+||...++|..++.+....-++..|.|.++.|+++|++. T Consensus 251 ~g--~~~~~l~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~~~~e~~~~~f~~~~l~P~~~~ie~~ln~k 326 (409) T protein:vir:10 251 IG--YKFEPISQKLVDAQ-FLENSQLTIRQIASVFGVKM-HQLNDLDRATHSNITEQNREFYIDTLQSILNMYELEINYK 326 (409) T ss_pred CC--ceEEEccCChhhHH-HHHHHHHHHHHHHHHhCCCH-HHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 33 25666666432222 37899999999999999999 6778766789999999999999999999999999999988 Q ss_pred HHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 VLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRV 464 (629) Q Consensus 388 ~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v 464 (629) +|-+.- ....|-|-||.+.|. ++|..+.+ ..++..|++|.+++|+++|++.-.+-|.- T Consensus 327 L~~~~~-----~~~~~~~~fd~~~ll-~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~------------- 387 (409) T protein:vir:10 327 LFLISE-----IKNGFYSKFNVDTIL-RADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGDVL------------- 387 (409) T ss_pred hcCchh-----ccCCcEEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCee------------- Confidence 764421 124466889999983 34443333 55889999999999999999755443310 Q ss_pred hcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 465 GQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 465 ~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) + .|. -..|.+....+.. ..|++ T Consensus 388 -------------~-------~~~---n~~~~~~~~~~~~----kgGe~ 409 (409) T protein:vir:10 388 -------------L-------ING---NMIPVKMAGEQYS----KGGEK 409 (409) T ss_pred -------------e-------ecc---Cccchhhcccccc----ccCCC Confidence 0 000 0111111110000 01111 No 53 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=99.50 E-value=6.5e-14 Score=92.90 Aligned_cols=401 Identities=15% Similarity=0.114 Sum_probs=207.7 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |..+.+. -|.|..-- ...+-.-+..++++.--...+..+- .++-+-..+-+.-.+.-+++++|.+.| T Consensus 1 ~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v--------~~~~~~~~~~V~~ci~~Ia~~ia~lp~ 67 (409) T protein:vir:93 1 MAKENIV--TRIKKKLI---DNWIDQSTSKLYDFSPWKNRSFWGV--------INNTLETNETIFSAITKLSNSMASLPL 67 (409) T ss_pred CCccchh--hhhhhhhh---hhhhccccccccccccccCcccccc--------chhhhhccHHHHHHHHHHHHhhhhCce Confidence 6665432 22222110 0011111112222211111111110 111233455566678889999999988 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+-+.. .++ .+..+...=.---+-..++++.+..+|-+-|++|+.+.--..| .+ .+++ T Consensus 68 ~~~~~~~~-------~~~------~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G------~~-~~L~ 127 (409) T protein:vir:93 68 KMYEDYKV-------VNT------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH------QP-SKLF 127 (409) T ss_pred eEeecccc-------ccc------hHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCC------cE-EEEE Confidence 77553311 222 2444443322334456789999999999999999987522222 21 2355 Q ss_pred eecHHHhcc----CCCee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 161 ALTPEEVRA----SEKKT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 161 ~vt~~eI~~----~~~~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) .|..+.|.. .++.+ .+....|....|. ..| ||++=++++..-..--||+.++.+.+.=...+.+. +..+. T Consensus 128 ~l~~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~-~~e-Vih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~--~~~~~ 203 (409) T protein:vir:93 128 LLNPDVVEMLIENQSRELYYSIHAATGNKLIVH-NMD-MLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF--NLTEM 203 (409) T ss_pred EEcCceeEEEEeCCCcEEEEEEEcCCceEEEEc-ccc-EEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHH--HHHhc Confidence 555554442 22222 2444445443332 233 55554555555555678877665544422222221 22222 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) ...+.||+-.++.++ ....+.+.+.|.+ .+...+. ++|+ ++ --++ T Consensus 204 ~~~~~~i~~~~~~l~----------------------~e~~~~~~~~~~~----~~~~~g~-----~~vl--~~--g~~~ 248 (409) T protein:vir:93 204 QKPDSFMLKYGSNVG----------------------KEKRQQVLEDFKQ----YYEENGG-----ILFQ--EP--GVEI 248 (409) T ss_pred CCCCceEEecCCCCC----------------------HHHHHHHHHHHHH----HhhcCCC-----eeec--CC--CceE Confidence 222333433333322 2344555555543 2322221 2222 22 1234 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) +.|... -.+.--+++|+..+..||..|.||| .+||.+.++|..+..+....-++..|.|.++.|.++|++.+|-+ T Consensus 249 ~~l~~~-~~d~q~~e~r~~~~~~Ia~~fgVPp-~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~--- 323 (409) T protein:vir:93 249 EPLPKK-YVSEDIVASENLTRERVANVFQLPS-VFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTK--- 323 (409) T ss_pred EEcCCC-hhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc--- Confidence 444432 2223348899999999999999999 67787788999999999999999999999999999999988754 Q ss_pred hcCCChhheEeeecCccccc-CCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhh Q lcl|Aclame:pro 395 REGIDPNAYVVWHDASQLTV-DPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP 472 (629) Q Consensus 395 ~eG~d~~~yv~w~DaS~L~~-~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~ 472 (629) .+++ ..|.|-||.+.|.. |....-++ ..++..|++|.+++|+++|++.-.+=|. - +++ T Consensus 324 -~~~~-~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~-------~-----------~~~ 383 (409) T protein:vir:93 324 -TDRE-KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDK-------P-----------LIS 383 (409) T ss_pred -cccc-CcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe-------e-----------eec Confidence 2332 24668899988843 32222223 4488899999999999999975432221 0 000 Q ss_pred hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC Q lcl|Aclame:pro 473 TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTED 518 (629) Q Consensus 473 ~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~ 518 (629) ....+++.+ ...+.....+|. -..|. T Consensus 384 ------~n~~~~~~~------~~~~~~~~gG~~--------n~~e~ 409 (409) T protein:vir:93 384 ------GDLYPIDTP------LELRKSLKGGDK--------NVNES 409 (409) T ss_pred ------ccccccccc------hhhcccccCCCC--------CcCCC Confidence 001111110 000000111111 11111 No 54 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=99.50 E-value=8.8e-14 Score=92.15 Aligned_cols=477 Identities=13% Similarity=0.064 Sum_probs=227.9 Q ss_pred CCCCcc--eeEEcCCCCCCCcccceeeeccccc--CcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhcee Q lcl|Aclame:pro 1 MAPTSL--RIVRRPKSEPVSTRQRALVAASQPV--ENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSAS 76 (629) Q Consensus 1 ma~t~l--r~vr~pk~~~~~~r~r~l~aAsa~~--~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~S 76 (629) |=-.|+ |-+-+||.--- . ...++++ +..... ....-+|..=+ ++|..-+-++-.|.=+++.++ T Consensus 1 ~~~~~~~i~s~~~~~~i~~----~--~~~s~~~~~~~~~~~------~~pp~~~~~la-~l~~~n~~v~scI~~ia~~IA 67 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKR----E--EVESQALGETRFEEY------VEPKVNPLVLL-SLLQVNPYHASACSIKANDII 67 (542) T ss_pred Cccccccccccccchhhhh----c--cccccccccccCCcc------ccCCCCHHHHH-HHHhhcHHHHHHHHHHHHHHh Confidence 443322 22333322111 0 1111111 111000 01112343322 466666777777888999999 Q ss_pred eeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccc Q lcl|Aclame:pro 77 RVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPV 156 (629) Q Consensus 77 r~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~ 156 (629) ++.+.. +.+.. ... ...+-.--+--.++++.+..++-+-|.+|+.++-...|... T Consensus 68 ~l~~~~---~~~~~---~~l-------------~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~------ 122 (542) T protein:vir:41 68 RTGYIL---EGDDE---GVV-------------DEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPI------ 122 (542) T ss_pred hCceee---ecccc---hhh-------------hhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEE------ Confidence 887765 21111 111 11122223345678999999999999999987643434321 Q ss_pred hhhheecHHHhccCC-CeeEEECCCCCCC--------------------cccCCCceEEEEeCCCcccccCCccchhhhH Q lcl|Aclame:pro 157 PEWLALTPEEVRASE-KKTIIELPTGDKH--------------------EFRDGLDGMFRVWNPRARRAREPDSPVRANL 215 (629) Q Consensus 157 ~eW~~vt~~eI~~~~-~~~~i~lP~g~~h--------------------~~~~~~D~~~RvW~P~Prra~eaDSPVRa~l 215 (629) +.+.|....|.... +...+.+.++... ......| ||++=++++..-..--||+.+++ T Consensus 123 -~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~e-IiHir~~~~~~~~~Glspi~~~~ 200 (542) T protein:vir:41 123 -RFEYIPSHTIRVHKDGSRYRQTWDGVNITHFKDYRYEGEINPETGEDQDSVGANE-LVFIHIPSPVCSYYGVPRYVSAA 200 (542) T ss_pred -EEEEEcCcceEEEEcCCeeEeeecCCcceeEEeecccccccccccccccccCccc-EEEecCCCCCCCcccccHHHHHH Confidence 12233333333211 1111111111111 1112234 44444445555555678998888 Q ss_pred HHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccc Q lcl|Aclame:pro 216 DSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDS 295 (629) Q Consensus 216 d~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S 295 (629) ..+.=-.-..+...+..+.-.+..|||.+|....=-.. . .......+.+.|.+.+- ..+.- .. T Consensus 201 ~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~----------~--~~~~~~e~~~~lk~~~~----~~~~g-~~ 263 (542) T protein:vir:41 201 PAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDELE----------E--DPDGNPTGRTVIQALIE----DNFKH-LK 263 (542) T ss_pred HHHHHHHHHHHHHHHHHhccCCccEEEEeCCccccccc----------c--ccccCHHHHHHHHHHHH----HHHhh-hh Confidence 77644444444444444445555678888866541000 0 00111223444444443 22221 11 Q ss_pred cccccceeeeechHHhcCceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhcccc--CcchhhHhHHhhhhhhhh Q lcl|Aclame:pro 296 MAALIPMFAAAPGELIKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGS--NSNHWSAWQIGDEDVRLH 372 (629) Q Consensus 296 ~AA~vPIva~vP~E~i~~ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~--~~NhwsAw~i~de~v~~h 372 (629) -.+-.|+|+.+|++--++++...+.....+ --++.|+..+..||..|.||| .+||+.. ..|..++.+....-++.- T Consensus 264 ~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp-~~lG~~~~~t~n~sn~Eq~~~~f~~~t 342 (542) T protein:vir:41 264 EAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDP-YRLGIADTGPLGGNFAEVTRRTYYESV 342 (542) T ss_pred cccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCcCCCcccccccHHHHHHHHHHHH Confidence 234578999999887777766666543333 347899999999999999999 6788843 347778899999999999 Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHH-hCCCcccccCCC Q lcl|Aclame:pro 373 ILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKM-LGLADDTVYDFT 451 (629) Q Consensus 373 I~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~-~Gl~ed~~yd~t 451 (629) |.|.+..|+++|++.++.. .+. .|.|+||..+|.. .|+...+..+++.|++|.+++|.. .|++-. .| T Consensus 343 L~P~~~~ie~~ln~~L~~~----~~~---~~~~~f~~~~ll~-~d~~~~~~~~v~~GilT~NE~Re~L~g~~pg--dd-- 410 (542) T protein:vir:41 343 VRPQQNIISSILTDFFQVK----FNP---KTRFKFNDETLLE-SDSVRNCALLVQSGVLTPAEARERLFGLDGG--PD-- 410 (542) T ss_pred HHHHHHHHHHHHHhhcccc----cCC---ceEEEecchhhcc-hHHHHHHHHHHhCCCCCHHHHHHhhCCCCCC--Cc-- Confidence 9999999999999866543 222 4678999999874 577766677899999999999974 476532 22 Q ss_pred CHHHHHHHHHHHHhcCcchhhhhhhhcccccCccC---CCCCCCCCCCCCCCCC-CcCCCCCCCCCCCCCCCCCCCcccC Q lcl|Aclame:pro 452 TPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEF---PTPTVALPPAEEQDGD-EEASGASRREEPDTEDDAGTDDSDQ 527 (629) Q Consensus 452 t~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~---p~p~~a~~p~~~~~~~-~e~~~~~~~~ePdTe~d~~~d~~~~ 527 (629) +-|+|.-..+-. +...+- +.+...........++ -+..+++.. +.-+.+...+.+. T Consensus 411 ----------------~~l~p~~~~~~~-~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~--~~~~~~~~~~~~~- 470 (542) T protein:vir:41 411 ----------------IFMVPSKGAAKS-VKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKL--SAEEKKKKIDESL- 470 (542) T ss_pred ----------------cccccccccccc-cccCCcCCCCCchhhhhhcccccCccccccccccc--cchhhcccccchh- Confidence 111111111100 000000 0000000000000000 000000000 0000000000000 Q ss_pred CCCCchhHHHHHHHHHHHHHHhhccc----CC-----------------hhhHHHhcccc-----------hHhhhhhcC Q lcl|Aclame:pro 528 ASLDSRETAMVEALVFRALELAGKRS----RT-----------------RSLPYELRQLS-----------DRELVRRLE 575 (629) Q Consensus 528 a~~~a~~~a~V~~lv~RALelAGkR~----r~-----------------r~~~ar~r~ip-----------~h~~hr~~~ 575 (629) ++ +..-|++ +||+- -+ +-...|..++- .|-+|+++ T Consensus 471 -----~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 537 (542) T protein:vir:41 471 -----AE------FRAEAYE-AGKKMLIIGGDMGSMSALNQGVSVIPSKPLNLERYEELLEASVEDMIGRIRHYLYKVI- 537 (542) T ss_pred -----hh------hHHhHHh-cCceEEEeecCchhhhhhhccceeccCCCcChHHHHHHHHhhHHHHHHHHHHHHHHHh- Confidence 00 1111222 23322 00 00001111000 13333332 Q ss_pred CCChhHHHHHHhhhhhh Q lcl|Aclame:pro 576 PVRREHVADLIRGWDSM 592 (629) Q Consensus 576 pv~~~~v~rLi~Gwd~~ 592 (629) ||-.- T Consensus 538 ------------~~~~~ 542 (542) T protein:vir:41 538 ------------GWREL 542 (542) T ss_pred ------------hhccC Confidence 33322 No 55 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=99.49 E-value=9.1e-14 Score=92.09 Aligned_cols=372 Identities=12% Similarity=0.118 Sum_probs=198.4 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.==+-|. ..++..... . .......+...+++... .+ --.-.++ ..+-++-.+.-++++||++.+ T Consensus 1 Mg~~~~~~-~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~-~~-v~~~~al-~~~~v~~~i~~ia~~ia~~p~ 65 (385) T protein:vir:10 1 MGLLTPRN-FNKRKAKNM----V-------YPSNPAFFTTTVGGMQL-SY-VSALSAL-QNTNVYSVINRIASDVASAHF 65 (385) T ss_pred Cccccchh-ccccccccc----c-------cccchhhhhhhccccCc-cc-cCHHHhh-ccHHHHHHHHHHHHHHhhCce Confidence 55222121 111111110 0 00001111111111111 00 0011223 355577778889999999877 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+-. ...+.+..--. .-..++++.+..+|.+-|++|+.+.-...+- .+...+. T Consensus 66 ~v~~~~-------------------~~~ll~~PN~~-~t~~~f~~~~~~~l~l~Gn~~~~i~r~~~~~-----~p~~~~~ 120 (385) T protein:vir:10 66 KTENTA-------------------TLNRLESPSSL-IGRFSFWQGALMQLCLSGNDYIPLVGQNLEH-----IPNSDVQ 120 (385) T ss_pred eeeccc-------------------hhhhhhcCCCC-CCHHHHHHHHHHHhhhcCCeEEEEEcCceeE-----eecCCce Confidence 542211 11122222222 3446899999999999999999875221111 0111111 Q ss_pred eecHHHhccCCCe--eEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhh Q lcl|Aclame:pro 161 ALTPEEVRASEKK--TIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) Q Consensus 161 ~vt~~eI~~~~~~--~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~ 237 (629) + ++...+++ ..+..+.|..-...+..|++ ||..+|.......--||+.++...+.-.....+...+..+.-.. T Consensus 121 -v---~~~~~~~~~~~~~~~~~~~~~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~ 196 (385) T protein:vir:10 121 -I---NYLPGNMGIVYTVLESNDRPQMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQIN 196 (385) T ss_pred -E---EEEEcCCceEEEEEEcCCceEEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 0 11112222 11222333332222344555 67677665555566799999999888777777777777777777 Q ss_pred hCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeE Q lcl|Aclame:pro 238 GNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) Q Consensus 238 gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL 317 (629) -.|||-+|..++= ....+.+.+.+-+. +.-.++ --|+++ + ++++.- T Consensus 197 ~~gil~~~~~~~~---------------------~e~~~~~~~~~~~~----~~~~n~---~~~~vl--~----~g~~~~ 242 (385) T protein:vir:10 197 PAGKLTISNYLSD---------------------GKDLESAREEFEKA----NTGDNS---GRLMVL--P----DGFDYT 242 (385) T ss_pred cceEEEeCCCCCC---------------------HHHHHHHHHHHHHH----hCcccc---CCcccc--C----CCceEE Confidence 7888888765441 12344455554432 211111 122233 2 234443 Q ss_pred EeCCchhHHH--HHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 318 KFDNQVTEVA--IKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) Q Consensus 318 ~f~~dvte~a--iktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~L 393 (629) .++....+.. .++|+..+..||..|.||| .+||.+ ++.++.+.-+.... +...|.|.++.|+++|++.+|.+ T Consensus 243 ~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~-~~lg~~~~~~~~~sn~eq~~~~-~~~~l~P~~~~ie~~l~~~l~~~-- 318 (385) T protein:vir:10 243 QLEMKTDVFKALADNSAYSADQISKAFGVPS-DILGGGTSTESQHSNIDQIKAT-YLANLNSYVNPIVDELRLKMNAP-- 318 (385) T ss_pred ecCCChhHHHHHHHHHHHHHHHHHHHhCCCH-HHcCCccCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCc-- Confidence 4433444444 4899999999999999999 777753 35566776665444 45579999999999999877532 Q ss_pred HhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCC---cccccCCCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 394 MREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLA---DDTVYDFTTPEGWAQWARDRVGQD 467 (629) Q Consensus 394 e~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~---ed~~yd~tt~Eg~~q~a~d~v~~~ 467 (629) -|.||.+.|. ++|..+.+ ..+++.|++|.+++|.++|+. .++++.. T Consensus 319 ----------~~~f~~~~ll-~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~----------------- 370 (385) T protein:vir:10 319 ----------DLELDIKDML-DVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF----------------- 370 (385) T ss_pred ----------eEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCccc----------------- Confidence 2678888873 33444444 338889999999999998764 2222211 Q ss_pred cchhhhhhhhcccccCccCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 468 PNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGD 502 (629) Q Consensus 468 P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~ 502 (629) ..+. ....+.++.++ T Consensus 371 -------------------~~~~-~~~~~g~~~dn 385 (385) T protein:vir:10 371 -------------------KPLT-TQVKGGDEGDN 385 (385) T ss_pred -------------------cCcc-cccCCCCCCCC Confidence 1111 11112221111 No 56 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=99.49 E-value=1.2e-13 Score=91.50 Aligned_cols=399 Identities=15% Similarity=0.126 Sum_probs=208.4 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhc-cCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAM-GSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~-~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |+... |+-|=|+.=.. ..+.-....+.++..-+.++. +.+. +-|-..+.+.-.+.-+++++|++. T Consensus 1 ~~~~~--~~~~~k~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~---------~~a~~~~~v~~~i~~Ia~~ia~lp 66 (409) T protein:vir:94 1 MAKEN--IVTRIKKKLID---NWIDQSASKLYDFSPWKNKSFWGVIN---------NTLETNETIFSAITKLSNSMASLP 66 (409) T ss_pred Ccccc--cchhhhhHHhh---hhhcCCcccccccccccCccccccch---------hhhhccHHHHHHHHHHHHhhhhCc Confidence 65543 33332332110 001001111222111111111 1111 112345666777788999999998 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..-+-.. ..++ .+..+...=----+-..++++.+..++-+-|++|+.+.-... |.+. ++ T Consensus 67 ~~~~~~~~-------~~~~------~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~------G~~~-~L 126 (409) T protein:vir:94 67 LKMYEDYK-------VVNT------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY------HQPS-KL 126 (409) T ss_pred eeEeeccc-------ccch------hHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCC------CcEE-EE Confidence 87654221 1122 244444332334556778999999999999999998853222 2222 35 Q ss_pred heecHHHhc--c--CCCee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 160 LALTPEEVR--A--SEKKT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) Q Consensus 160 ~~vt~~eI~--~--~~~~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~ 233 (629) +.|.++.|. . .++.+ .+..+.|....|. ..| ||++=++++..-..--||+.++.+.+.-...+.+. +... T Consensus 127 ~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~-~~d-vih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~--~~~~ 202 (409) T protein:vir:94 127 FLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH-NMD-MLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF--NLTE 202 (409) T ss_pred EEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEc-ccc-EEEecCCCCCCccccccHHHHHHHHHHHHHHHHHH--HHHh Confidence 566665543 1 22333 2445556554433 233 55553555655556678887766655433222221 1222 Q ss_pred hHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcC Q lcl|Aclame:pro 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) Q Consensus 234 SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ 313 (629) .-..+.||+-.++.++ ....+.+.+.|-+ .++..+. ++|+ ++ --+ T Consensus 203 ~~~~~~~i~~~~~~l~----------------------~e~~~~~~~~~~~----~~~~~g~-----~~vl--~~--g~~ 247 (409) T protein:vir:94 203 MQKPDSFMLKYGSNVG----------------------KEKRQQVLEDFKQ----YYEENGG-----ILFQ--EP--GVE 247 (409) T ss_pred cCCCCeeEEecCCCCC----------------------HHHHHHHHHHHHH----HhhcCCC-----eeec--CC--Cce Confidence 2222333433333322 1234445555543 2322221 2222 22 124 Q ss_pred ceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 VTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTV 392 (629) Q Consensus 314 ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~ 392 (629) ++.|.+ ...+ =-+++|+..+..||+.|.||| .+||.+.++|..+..+....=++..|.|.++.|.++|++.+|-. T Consensus 248 ~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~Ll~~- 323 (409) T protein:vir:94 248 IEPLPK--KYVSEDIVASENLTRERVANVFQLPS-VFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTK- 323 (409) T ss_pred EEEcCC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc- Confidence 444544 3333 337899999999999999999 56787778899999999999999999999999999999887753 Q ss_pred HHhcCCChhheEeeecCcccc-cCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 393 LMREGIDPNAYVVWHDASQLT-VDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 393 Le~eG~d~~~yv~w~DaS~L~-~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) .+.+. .|.|-||.+.|. .|....-++ ..++..|++|.+++|.++|++.-.+=|. - + T Consensus 324 ---~~~~~-~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~-------~-----------~ 381 (409) T protein:vir:94 324 ---TDREK-NRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDK-------P-----------L 381 (409) T ss_pred ---ccccC-cceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe-------E-----------e Confidence 23332 466778998874 332222233 4488899999999999999975433221 0 0 Q ss_pred hhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTED 518 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~ 518 (629) ++ ....+++.+ ...+.....+|. -..|. T Consensus 382 ~~------~n~~~~~~~------~~~~~~~kGG~~--------n~~e~ 409 (409) T protein:vir:94 382 IS------GDLYPIDTP------LELRKSLKGGDK--------NVNES 409 (409) T ss_pred ec------ccccccccc------hhhcccccCCCC--------CcCCC Confidence 00 011111111 000000111111 11111 No 57 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=99.47 E-value=9e-14 Score=92.11 Aligned_cols=374 Identities=14% Similarity=0.104 Sum_probs=201.3 Q ss_pred ceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEEEee Q lcl|Aclame:pro 6 LRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIASAI 85 (629) Q Consensus 6 lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~asei 85 (629) .++.++.|.++.++..... ....+.++ .+...+.++.. -....|+ .++-++-.+.-++++||.+.+..-+- T Consensus 1 M~~f~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~-v~~~~~~----~~~~v~~~i~~ia~~ia~~p~~~~~~ 71 (386) T protein:vir:48 1 MPIFNITNLATESPPISQG--GFFDITDP--DFLSTLNGSEW-VSAESAL----RNSDLFSIINQLSNDLATVKLTASRK 71 (386) T ss_pred Ccccccccccccccccccc--cccccccc--hhcccccCCce-echhhhh----cchHHHHHHHHHHHhhccCceeeccc Confidence 5666666655544321110 01112221 11111111110 1122222 46677788889999999998866432 Q ss_pred cCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHH Q lcl|Aclame:pro 86 DPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPE 165 (629) Q Consensus 86 D~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~ 165 (629) ..+ .-...+|+ -+-..++++.+..++.+-|++|+.+.--..| . ..+++.|-.+ T Consensus 72 ~~~-----~l~~~pN~---------------~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g------~-~~~L~~l~~~ 124 (386) T protein:vir:48 72 QLQ-----GIIDNPSN---------------NANRFNFYQSIFAQMLLGGEAFAYRWRNENG------R-DMKWEYLRPS 124 (386) T ss_pred hhH-----HHhhcCCC---------------CCCHHHHHHHHHHHhhhcCcEEEEEEECCCC------c-EEEEEEecCc Confidence 211 11112222 2446789999999999999999987532222 2 1235555555 Q ss_pred Hhc--cC--CCeeE--EECCCCC--CCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhh Q lcl|Aclame:pro 166 EVR--AS--EKKTI--IELPTGD--KHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) Q Consensus 166 eI~--~~--~~~~~--i~lP~g~--~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~ 237 (629) .|. .. ++.+. +....+. ...-.+..| ||++=++++.....--||+..+...+.-.....+...+..+.-.. T Consensus 125 ~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~e-vih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~ 203 (386) T protein:vir:48 125 QVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQGD-VLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALN 203 (386) T ss_pred eeEEEEcCCCceEEEEEEecCccccceeEecCcc-EEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCC Confidence 444 21 12111 2222211 111112233 555546666655566789998888877777666666666666566 Q ss_pred hCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeE Q lcl|Aclame:pro 238 GNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) Q Consensus 238 gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL 317 (629) ..|||-+|..++ ....+.+++.+.+- ..+ +--|+|+. ++++.- T Consensus 204 ~~~ii~~~~~~~----------------------~e~~~~~~~~~~~~----~~n-----~g~~~vl~------~g~~~~ 246 (386) T protein:vir:48 204 ANGILKIKGGGL----------------------LDFKTKLSRSRQAM----KQM-----QGGPLVLD------DLEEFT 246 (386) T ss_pred cceEEEeCCCCC----------------------HHHHHHHHHHHHHh----hcC-----CCCceecC------CCceEE Confidence 667776655433 11233444444321 122 22244443 344444 Q ss_pred EeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 318 KFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMRE 396 (629) Q Consensus 318 ~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~e 396 (629) .++....+. -+++|+..+..||..|.||| .|||. ..+..++++...+-++..|.|.++.|++.|++.++... T Consensus 247 ~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~--~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~---- 319 (386) T protein:vir:48 247 PLEIKSNVSQLLKQADWTTGQFAKVYGIPE-NVVGG--QGDQQSSLEMSLDLYNKAVSRYLRPFLSELSQKLSCDV---- 319 (386) T ss_pred EcCCChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh---- Confidence 454444444 38999999999999999999 78885 23345788888889999999999999999999887542 Q ss_pred CCChhheEeeecCcccccCCCchH---HHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhh Q lcl|Aclame:pro 397 GIDPNAYVVWHDASQLTVDPDKTD---EARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPT 473 (629) Q Consensus 397 G~d~~~yv~w~DaS~L~~~Pd~t~---eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~ 473 (629) ++|- ...+ ++|... ....+++.|.+|..+.|+.+|..- + ++.|.-.. T Consensus 320 ~~~~---~~~~-------~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~---~--~~~~~~~~--------------- 369 (386) T protein:vir:48 320 DADI---LPAV-------DPTGSNSVSRINSMVKSGTLAQNQGLYILQQAE---I--LPKELPEG--------------- 369 (386) T ss_pred hcch---hhhh-------ccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCC---C--CCccchhh--------------- Confidence 1111 1112 233322 234688999999999999998642 1 11110000 Q ss_pred hhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 474 LAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 474 l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) . .... +|.+. |+..++| T Consensus 370 --------~--~~~~-----~~~~g--------Gd~~~~~ 386 (386) T protein:vir:48 370 --------E--NPNK-----TTLKG--------GEINGED 386 (386) T ss_pred --------c--CCCC-----CccCC--------CCCCCCC Confidence 0 0000 00000 0011111 No 58 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=99.47 E-value=1e-13 Score=91.80 Aligned_cols=336 Identities=15% Similarity=0.158 Sum_probs=186.2 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +|.+-+..-+=+. .++++ +..+.+.=--.-+..+++++.+..+|-+-|++|+.+.--..| . T Consensus 1 ia~lp~~~~~~~~-------~~~~~------l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G------~ 61 (348) T protein:vir:93 1 MASLPLKMYEDYK-------VVNTE------VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH------Q 61 (348) T ss_pred CcccceEeEecCc-------CcccH------HHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC------c Confidence 6666665544221 12332 555555434445677899999999999999999988532333 2 Q ss_pred cchhhheecHHHhc----cCCCee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHH Q lcl|Aclame:pro 155 PVPEWLALTPEEVR----ASEKKT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTI 228 (629) Q Consensus 155 ~~~eW~~vt~~eI~----~~~~~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I 228 (629) +. +.+.|..+.|. ..++.. .+..+.|....|. ..| ||++=++++.....--||+.++...+. +...+ T Consensus 62 ~~-~L~~l~~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~-~~e-iih~r~~~~~~~~~G~s~~~~~~~~i~----~~~~~ 134 (348) T protein:vir:93 62 PS-KLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH-NMD-MLHFKHIVASNMVQGISPIDVLKNTTD----FDNAV 134 (348) T ss_pred EE-EEEEEcCCceEEEEeCCCcEEEEEEEcCCCeEEEEc-ccc-EEEecCCCCCCceeeccHHHHHHHHHH----HHHHH Confidence 22 34455444443 222332 2556666654443 233 555546666655556688776655433 22222 Q ss_pred HHHHHhHh--hhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeee Q lcl|Aclame:pro 229 ANASKSRL--IGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAA 306 (629) Q Consensus 229 ~naa~SRL--~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~v 306 (629) .+...+.. .+.|++..++.++ ....+.+.+.|.+. ++. +- . ++|+ T Consensus 135 ~~~~~~~~~~~~~~i~~~~~~l~----------------------~e~~~~~~~~~~~~----~~n--~~-~--~~vl-- 181 (348) T protein:vir:93 135 RTFNLTEMQKPDSFMLKYGSNVS----------------------TEKRQQVLEDFKQY----YEE--NG-G--ILFQ-- 181 (348) T ss_pred HHHHHHhcCCCceeEEecCCCCC----------------------HHHHHHHHHHHHHH----hhc--CC-C--eeec-- Confidence 22211111 1222322222211 22445566666542 221 11 1 2232 Q ss_pred chHHhcCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHH Q lcl|Aclame:pro 307 PGELIKNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAIT 385 (629) Q Consensus 307 P~E~i~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt 385 (629) + .+.+.-.++....+.. +++|+..+..||..|.||| .|||.+.++|..++.+....-++..|.|.++.|.++|+ T Consensus 182 ~----~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~-~~lg~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~ 256 (348) T protein:vir:93 182 E----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPS-IFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFN 256 (348) T ss_pred C----CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2 2334444444455544 7899999999999999999 66777778999999999999999999999999999999 Q ss_pred HHHHHHHHHhcCCChhheEeeecCcccccCCCchHH---HHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHH Q lcl|Aclame:pro 386 NQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDE---ARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARD 462 (629) Q Consensus 386 ~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~e---A~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d 462 (629) +.+|-+ .+.+ ..|-|-||.+.|.. .|..+. ...+++.|++|.+++|.++|+..-.+=|. T Consensus 257 ~~l~~~----~~~~-~g~~i~fd~~~l~~-~d~~~~a~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~------------ 318 (348) T protein:vir:93 257 RKLLTK----TDRE-KNRYFKFNVKSYLR-ADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDK------------ 318 (348) T ss_pred HhhCCc----cccc-CcceEEeechhhhc-cCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcCe------------ Confidence 988754 1222 23557789999854 233322 35589999999999999999974322111 Q ss_pred HHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 463 RVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 463 ~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) -+++ ....+++.+ ...+.. ..|.+..++.. T Consensus 319 ------~~~~------~n~~~~~~~------~~~~~~---------~~gg~~n~~~~ 348 (348) T protein:vir:93 319 ------PLIS------GDLYPIDTP------LELRKS---------LKGGDKNVNES 348 (348) T ss_pred ------Eeec------ccccccccc------hhhccc---------ccCCCCCcCCC Confidence 0000 111111111 000000 11111111111 No 59 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=99.46 E-value=3e-13 Score=89.24 Aligned_cols=478 Identities=13% Similarity=0.103 Sum_probs=206.9 Q ss_pred CCCC-cceeEEcCCCCCCCc-------------ccceeee---cccccCcccchh---hhhccCCcccchhHHHHHHHh- Q lcl|Aclame:pro 1 MAPT-SLRIVRRPKSEPVST-------------RQRALVA---ASQPVENPGKAF---RKAMGSSTRTDWQEDAWKAYD- 59 (629) Q Consensus 1 ma~t-~lr~vr~pk~~~~~~-------------r~r~l~a---Asa~~~~~~~~~---kk~~~~~~~~~WQ~eAW~~~d- 59 (629) |--- ++|-+-++|...-.- +.++... ...+...-+..+ .-..+.+.+ |..+ .+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~--~~~~l 76 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTK--PSIR--NNQDL 76 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhhhchhhheeecccccccC--CccC--ChhHH Confidence 3322 333333333322211 1111111 111111101000 001111222 2222 1222 Q ss_pred --------hcchhhhhhhhhhhceeeeEEEEEeecCC-CCC-------CCCCCCCCcchhHHHHHHHHHhcC----Chhh Q lcl|Aclame:pro 60 --------AVGELRYYVGWRSSSASRVRLIASAIDPD-TGL-------PTGSIDEDDRVGARVQQIVNQIAG----GALG 119 (629) Q Consensus 60 --------~VgELryyvgWr~~s~Sr~rL~aseiD~D-tG~-------ptg~~~~~~~~~~r~~~iv~~iaG----G~lG 119 (629) .-+-|+=.+.=+++.++..= ...+++.+ -|. ..-.+.++......+.+..+...- .+.- T Consensus 77 ~~l~~~~~~npiv~~~I~~~a~~ia~~~-~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~p~~~s 155 (547) T protein:vir:63 77 HGVLKKFGGNIILNAIINTRSNQVSMYC-KPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDS 155 (547) T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHhhhh-hhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCCCccch Confidence 12333333344444444211 11122211 010 000111111111233333333321 1223 Q ss_pred HHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhccC--CC-------eeEEECCCCCCCcccCCC Q lcl|Aclame:pro 120 QAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRAS--EK-------KTIIELPTGDKHEFRDGL 190 (629) Q Consensus 120 QaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~~--~~-------~~~i~lP~g~~h~~~~~~ 190 (629) ..++++.+..++-+-|.+|+.++-...|.. -+++.|.++.|.-. .. .+-+..-+|..-+..... T Consensus 156 ~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~-------~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~ 228 (547) T protein:vir:63 156 FSSFVKKIVRDTYMYDQVNFEKVFNRNQSM-------VRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAR 228 (547) T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCcE-------EEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccc Confidence 468999999999999999988764333321 12333433333211 00 011111222222222334 Q ss_pred ceE-EEEeCCC--cccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCcccc Q lcl|Aclame:pro 191 DGM-FRVWNPR--ARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAP 267 (629) Q Consensus 191 D~~-~RvW~P~--Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p 267 (629) |++ || .||. +.....--||+.++.+.+.-..-..+...+..+.-..-.|||.+|....+ T Consensus 229 eiih~r-~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~l----------------- 290 (547) T protein:vir:63 229 EMAFAV-RNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQ----------------- 290 (547) T ss_pred cEEEec-ccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCC----------------- Confidence 555 44 3443 33333456888777776665555555555544444445677777654433 Q ss_pred ccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCch Q lcl|Aclame:pro 268 PILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSP 346 (629) Q Consensus 268 ~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~p 346 (629) ...+.+.|.+.+. .++.-. .-|--+||+.. ++++...+.-...+. -+++|+..++.||..|.||| T Consensus 291 ---s~e~~~~lk~~~~----~~~~G~-~nagk~~vl~~------~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP 356 (547) T protein:vir:63 291 ---SQHALEIFKREWK----NSLSGI-NGSWQIPVVSA------EDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDP 356 (547) T ss_pred ---CHHHHHHHHHHHH----HHhcCc-ccccccccccC------CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 1223444555543 222211 11333566532 235555554333333 47889999999999999999 Q ss_pred HHhhccccC----------cchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCC Q lcl|Aclame:pro 347 ERLLGLGSN----------SNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDP 416 (629) Q Consensus 347 E~LLGlg~~----------~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~P 416 (629) .+||+.++ .|+.++.+....-++..|.|.+..|+++|++.+|.. + | ..|.|.||..++.. . T Consensus 357 -~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~-~---~---~~~~~~f~~~~~~~-~ 427 (547) T protein:vir:63 357 -AEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAE-F---G---DKYTFQFVGGDIKS-E 427 (547) T ss_pred -HHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-c---C---CceEEEeecccccc-H Confidence 88887433 478888888888899999999999999999988753 2 2 35788888655433 2 Q ss_pred CchHHHHHHHHcCCCCHHHHHHHhCCCc-ccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCC- Q lcl|Aclame:pro 417 DKTDEARDAFDRGAITAEAMVKMLGLAD-DTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALP- 494 (629) Q Consensus 417 d~t~eA~~~~~~G~it~ealr~~~Gl~e-d~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~- 494 (629) ....+...++.+|.+|.+++|++.||.- ..+=|. . -+|.-+..+......-......++..... T Consensus 428 ~~~~~~~~~~~~g~lT~NE~R~~~gl~P~~egGD~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (547) T protein:vir:63 428 LESVKILAEKAKVAMTVNEVRKELNLPGDVIGGDI--P------------LNGVIVQRIGQLMQQEQFEHEKQQSNLQML 493 (547) T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCce--e------------ecccccccccccccccCCccccchhhcccc Confidence 2222334577889999999999999953 222221 0 01111111111111111111111111111 Q ss_pred ---CCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHHHhcccch Q lcl|Aclame:pro 495 ---PAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPYELRQLSD 567 (629) Q Consensus 495 ---p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~ar~r~ip~ 567 (629) ++.+..++++.+.+........++|...-..+. ..|.+..++-. ...+- .. T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---------------~~~~~~~~~~~-~~~~~------~~ 547 (547) T protein:vir:63 494 QEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDN---------------ANAGKQGMKGD-KPNDW------QT 547 (547) T ss_pred ccccCCCCCCCCCCCCCCcccCCCcCccccccCccc---------------cchhhhhcCCC-Ccccc------CC Confidence 111111111111111111111111110000000 01111111110 00000 00 No 60 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=99.46 E-value=2.1e-13 Score=90.05 Aligned_cols=473 Identities=13% Similarity=0.092 Sum_probs=213.5 Q ss_pred CCCC-cceeEEcCCCCCCCccc-----------c-----------eeeecccccCcccchhhhhccCCcccchh-----H Q lcl|Aclame:pro 1 MAPT-SLRIVRRPKSEPVSTRQ-----------R-----------ALVAASQPVENPGKAFRKAMGSSTRTDWQ-----E 52 (629) Q Consensus 1 ma~t-~lr~vr~pk~~~~~~r~-----------r-----------~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ-----~ 52 (629) |+-- ++|.+-+++..+-.--+ + -..|=++++. ++..|-. +...+..+. . T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~-~~~~~~~--~~~~r~~~~~~~~l~ 81 (551) T protein:vir:80 5 LGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVI-GSMSANP--GFKTKPSIRNNQDLH 81 (551) T ss_pred hhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccCcceeecccc-cceecCc--ccccCccccChhHHH Confidence 3322 44444444443332200 0 0112122221 2222211 111111111 0 Q ss_pred HHHHHHhhcchhhhhhhhhhhceeeeEEEEEeecCCCCCCCC--------C-CCCCcchhHHHHHHHHHhc----CChhh Q lcl|Aclame:pro 53 DAWKAYDAVGELRYYVGWRSSSASRVRLIASAIDPDTGLPTG--------S-IDEDDRVGARVQQIVNQIA----GGALG 119 (629) Q Consensus 53 eAW~~~d~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg--------~-~~~~~~~~~r~~~iv~~ia----GG~lG 119 (629) .-=+.|..-+-|+=.|.=+++.++.+=..+ .++.+ |.+.. . +.++......+.++.+... ..+.- T Consensus 82 ~~~~~~~~npiv~~~I~~ia~~IA~~~~~~-~~~~~-g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l~~pn~~~~p~~~s 159 (551) T protein:vir:80 82 GVLKKFGGNIILNAIINTRSNQVSMYCKPA-RHSEK-GVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDNDINRDS 159 (551) T ss_pred HHHHHhhcCHHHHHHHHHHHHHHhhhhhhh-hhhcC-CCCceEEecccCcccChhHHHHHHHHHHHHHhcCCCCCCccch Confidence 011123234666667777777777532222 22211 22100 0 1111111122334444332 12234 Q ss_pred HHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhcc--CCCe-------eEEECCCCCCCcccCCC Q lcl|Aclame:pro 120 QAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRA--SEKK-------TIIELPTGDKHEFRDGL 190 (629) Q Consensus 120 QaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~--~~~~-------~~i~lP~g~~h~~~~~~ 190 (629) ..++++.++.++-+-|.+|+.++-...|.. -+++.|.++-|.- ...+ .-+..-+|..-...... T Consensus 160 ~~~f~~~lv~dlll~Gnay~~i~rd~~G~~-------~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~ 232 (551) T protein:vir:80 160 FSSFVKKIVRDTYMYDQVNFEKVFNRNQSM-------VRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAR 232 (551) T ss_pred HHHHHHHHHHHHHhcCCEEEEEEECCCCcE-------EEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEccc Confidence 568999999999999999987764333321 1233343333321 1110 11122222222122233 Q ss_pred ceE-EEEeC-CCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccc Q lcl|Aclame:pro 191 DGM-FRVWN-PRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPP 268 (629) Q Consensus 191 D~~-~RvW~-P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~ 268 (629) |++ ||.|+ +++.....--||+.++.+.+.-..-..+...+..+.-..-.|||.++....+ T Consensus 233 eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~l------------------ 294 (551) T protein:vir:80 233 EMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQ------------------ 294 (551) T ss_pred ceEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCC------------------ Confidence 455 55443 2344344456888888777765555555554444444445666666543332 Q ss_pred cCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCch-hHHHHHHHHHHHHHHhhhccCchH Q lcl|Aclame:pro 269 ILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQV-TEVAIKTRNDAIARLAMGLDVSPE 347 (629) Q Consensus 269 ~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dv-te~aiktR~daIrrlA~~lD~~pE 347 (629) ...+.+.|.+.+.. .+.=.+ -|--+||+.. ++++...+.-.. +.--+++|+..++.||..|.||| T Consensus 295 --t~e~~~~lk~~~~~----~~~G~~-nag~~~vl~~------~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp- 360 (551) T protein:vir:80 295 --SQHALEIFKREWKN----SLSGIN-GSWQIPVVSA------EDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDP- 360 (551) T ss_pred --CHHHHHHHHHHHHH----HhcCcc-ccCccccccC------CCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCH- Confidence 12234455555542 222111 2334566632 234444443233 33357899999999999999999 Q ss_pred Hhhcccc----------CcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCC Q lcl|Aclame:pro 348 RLLGLGS----------NSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) Q Consensus 348 ~LLGlg~----------~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd 417 (629) .+||+.. +.|+.++.+....-++..|.|.+..|+++|++.++.. + | ..|.|.||..++... . T Consensus 361 ~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~-~---~---~~~~f~f~~~~~~~~-~ 432 (551) T protein:vir:80 361 AEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAE-F---G---DKYTFQFVGGDIKSE-L 432 (551) T ss_pred HHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-c---C---CceEEEeeccChhhH-H Confidence 8888733 3588889999888899999999999999999988753 2 2 458888886554332 1 Q ss_pred chHHHHHHHHcCCCCHHHHHHHhCCCc-ccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccc---cCccC-CCCCC- Q lcl|Aclame:pro 418 KTDEARDAFDRGAITAEAMVKMLGLAD-DTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPEL---ADVEF-PTPTV- 491 (629) Q Consensus 418 ~t~eA~~~~~~G~it~ealr~~~Gl~e-d~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~---~~~~~-p~p~~- 491 (629) ...+...++.+|++|.+++|++.||+- ..+=|. =+.|...+-++.. +..+. .++.. T Consensus 433 ~~~~~~~~~~~g~lT~NE~R~~~gl~P~~egGD~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (551) T protein:vir:80 433 ESVKILAEKAKVAMTVNEVRKELNLPGDVIGGDI------------------PLNGVIVQRIGQLMQQEQFEHEKQQSNL 494 (551) T ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCce------------------eecccccccccccccccCcchhhhhhcc Confidence 122334577889999999999999953 222221 0111111111111 11110 00000 Q ss_pred -----CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHHHhcccc Q lcl|Aclame:pro 492 -----ALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPYELRQLS 566 (629) Q Consensus 492 -----a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~ar~r~ip 566 (629) +....++++...+..++++.++.++......++. ..|.+..+|-- ...+- . T Consensus 495 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~------~ 550 (551) T protein:vir:80 495 QMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDN-----------------ANAGKQGMKGD-KPNDW------Q 550 (551) T ss_pred ccccCcCCCCCCCCCCCCCCccccCCCccccccccCccc-----------------cchhhhhcCCC-Ccccc------C Confidence 0000011111111111111111111000000000 01111111110 00000 0 Q ss_pred h Q lcl|Aclame:pro 567 D 567 (629) Q Consensus 567 ~ 567 (629) . T Consensus 551 ~ 551 (551) T protein:vir:80 551 T 551 (551) T ss_pred C Confidence 0 No 61 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=99.45 E-value=7.1e-13 Score=87.19 Aligned_cols=457 Identities=14% Similarity=0.116 Sum_probs=194.0 Q ss_pred CCCC-cce---------------eEEcCCCCCC---Cc-cccee-eecccccCcccchhhhh-ccCCcccchhHHHHHHH Q lcl|Aclame:pro 1 MAPT-SLR---------------IVRRPKSEPV---ST-RQRAL-VAASQPVENPGKAFRKA-MGSSTRTDWQEDAWKAY 58 (629) Q Consensus 1 ma~t-~lr---------------~vr~pk~~~~---~~-r~r~l-~aAsa~~~~~~~~~kk~-~~~~~~~~WQ~eAW~~~ 58 (629) ||-- +|| +.-+-|+--. -| |..+- +...-.+.+....|.++ ..-....+.+. -=.+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-l~~~~ 79 (535) T protein:vir:10 1 MAILKDLRNAFSLSNKKSTSYIELGDYDKDIVNKAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKK-LLKAY 79 (535) T ss_pred ChhhHHHHHHHHhhhhhhhhhHHHhhhhHHHHHhhhhhhhhhhhccccccccccCCcccccccCccccccCHHH-HHHHh Confidence 4322 222 1111111000 00 00000 00011111111111111 01111011111 11111 Q ss_pred hhcchhhhhhhhhhhce---------------eeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHH----HhcCChhh Q lcl|Aclame:pro 59 DAVGELRYYVGWRSSSA---------------SRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVN----QIAGGALG 119 (629) Q Consensus 59 d~VgELryyvgWr~~s~---------------Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~----~iaGG~lG 119 (629) .-.+-++-.+.=+++.+ ..++||-...+ ++..-. .....+..+.. ..-.+..- T Consensus 80 ~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~-----~~~~~~---~~~~~l~~lL~~~PN~~~~~~~~ 151 (535) T protein:vir:10 80 ADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKV-----MSKAQI---KRAHEIEDFIYNTGSEYYEWRDT 151 (535) T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCC-----Ccchhh---hhhhHHHHHHHhCCCCCCChhHH Confidence 11122222222222211 14455532221 111111 01122333332 12222223 Q ss_pred HHHHHHHHhcc-eeecCceEEEEEEcCCcccccCcccchhhheecHHHhcc--C-----CCeeEEECCCCCCCcccCCCc Q lcl|Aclame:pro 120 QAQLIKRVVEQ-LTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRA--S-----EKKTIIELPTGDKHEFRDGLD 191 (629) Q Consensus 120 QaqLlkr~~~~-LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~--~-----~~~~~i~lP~g~~h~~~~~~D 191 (629) -.++++.++.+ |+.-|..|+.|.--..|.. . +.+.|..+.|.- . +...-...-+|.........| T Consensus 152 ~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~------~-~L~~l~p~~V~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~e 224 (535) T protein:vir:10 152 FPRLLTKIINDMYVQDQINIERIFKNDSNEL------D-HFNAVDASKVVISYSPRSKDQPRKFEQFVSETKSVKFSERN 224 (535) T ss_pred HHHHHHHHHHHHHhhCCceEEEEEECCCCcE------E-EEEEeCCceeEEEEcCccccCceEEEEEecCceeEEECccc Confidence 34788888876 4455556665542233321 1 133333333321 1 111112222232222333445 Q ss_pred eE-EEEeCC-CcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCcccccc Q lcl|Aclame:pro 192 GM-FRVWNP-RARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPI 269 (629) Q Consensus 192 ~~-~RvW~P-~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~ 269 (629) ++ ||-|++ +...-..--||+.++...+.-..-..+...+..+.=.+-.|||-+|..+.- . T Consensus 225 iih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~------------------~ 286 (535) T protein:vir:10 225 LTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDA------------------Q 286 (535) T ss_pred EEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCc------------------c Confidence 55 555442 222233456888888887777777666666666655566688888765430 0 Q ss_pred CCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHh Q lcl|Aclame:pro 270 LGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERL 349 (629) Q Consensus 270 ~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~L 349 (629) ......+.|++.+- ..+.-.+ -+--+||+... + -+.+.|.+.. .+.--+++|+..++.||..|.||| .+ T Consensus 287 ls~e~~e~lk~~~~----~~~~G~~-nag~~~vl~~~-g---~~~~~l~~~~-~D~qfle~~~~~~~eIa~afgVPp-~~ 355 (535) T protein:vir:10 287 ANQMMLAGIRRQWT----SQGSGLG-GAWKIPILAAK-D---AKFVNMTQNS-RDMEFDKFLNFMIYDTAAIFQMQP-EE 355 (535) T ss_pred cCHHHHHHHHHHHH----HHhcCcc-cccccccccCC-C---ceEEecCCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HH Confidence 11123334444433 3333222 23445666431 1 1344444422 223358999999999999999999 88 Q ss_pred hccccCcch------------hhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCC Q lcl|Aclame:pro 350 LGLGSNSNH------------WSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) Q Consensus 350 LGlg~~~Nh------------wsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd 417 (629) ||+-.++|+ .++.+....-++..|.|.+..|+++|++.+|.. .|. +|.|.||. -+..|.. T Consensus 356 lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~----~~~---~~~f~f~~-l~~~d~~ 427 (535) T protein:vir:10 356 INFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMRY----VDT---DYRFSFTL-GDAQDKL 427 (535) T ss_pred hccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----cCC---eEEEEecc-ccccCHH Confidence 898666554 345556666677789999999999999988853 232 47788874 4455544 Q ss_pred chHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhc--ccccCccCCCCCC-CCC Q lcl|Aclame:pro 418 KTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLI--PELADVEFPTPTV-ALP 494 (629) Q Consensus 418 ~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll--~~~~~~~~p~p~~-a~~ 494 (629) ...++.+..-+|.+|.+++|+++||+--.+=|. |-..-+..-++ ...+....|.+.. ... T Consensus 428 ~r~~~~~~~~~g~lT~NE~R~~~gl~piegGD~-----------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 490 (535) T protein:vir:10 428 QEEQVWKLKLANGYFINEYRKDHGLKTVDGLDV-----------------PGFIGSAENFINATGFGQPNVPDSSDDSGS 490 (535) T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCCCCCccc-----------------cccccchhhcccccccccccCCCCCCCccc Confidence 444556677789999999999999975433221 00000000011 0111111111110 000 Q ss_pred CCCCCCCCC---c----CCCCCCCCCC---CCCCCCC--CCcccC Q lcl|Aclame:pro 495 PAEEQDGDE---E----ASGASRREEP---DTEDDAG--TDDSDQ 527 (629) Q Consensus 495 p~~~~~~~~---e----~~~~~~~~eP---dTe~d~~--~d~~~~ 527 (629) +.++.+..+ + ..|.+++..| +.+++.. .++.++ T Consensus 491 ~~~~~~~q~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:10 491 TLGERERQERIQHSKDYEKGKDDPKSPLPKPSESDDVSNNEDADT 535 (535) T ss_pred cCCccccCcccccccccccCCCCCCCCCCcCCCCCccccccccCC Confidence 000000000 0 0111111111 1111111 111111 No 62 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=99.45 E-value=1.6e-13 Score=90.77 Aligned_cols=484 Identities=12% Similarity=0.097 Sum_probs=212.3 Q ss_pred CCCC-cceeEEc-CCCCCCCccccee-eeccccc---CcccchhhhhccCCcccchhH--HHHHHHhhcchhhhhhhhhh Q lcl|Aclame:pro 1 MAPT-SLRIVRR-PKSEPVSTRQRAL-VAASQPV---ENPGKAFRKAMGSSTRTDWQE--DAWKAYDAVGELRYYVGWRS 72 (629) Q Consensus 1 ma~t-~lr~vr~-pk~~~~~~r~r~l-~aAsa~~---~~~~~~~kk~~~~~~~~~WQ~--eAW~~~d~VgELryyvgWr~ 72 (629) |+=- .-|+.+. .|+..-.---.+. .|.++|+ -.....|+.. -+....++. +-...|-.-+=++--+.=++ T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~--p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia 104 (576) T protein:vir:96 27 IDDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTK--RSYMKNSDNLHDVLKQFGNNPILNAIILTRS 104 (576) T ss_pred cccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCcccc--CcchhhhhhhHHHHHHhhcCHHHHHHHHHHH Confidence 1100 0000000 0000000000000 0111110 0000001000 000000110 00011101111333334455 Q ss_pred hceee-----------eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCC--h--hhHHHHHHHHhcceeecCce Q lcl|Aclame:pro 73 SSASR-----------VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGG--A--LGQAQLIKRVVEQLTVAGET 137 (629) Q Consensus 73 ~s~Sr-----------~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG--~--lGQaqLlkr~~~~LtVpGE~ 137 (629) +++|. +-|.+--.+.+ +.++ .++-.....+........-- + .--.++++.++.++-+-|.+ T Consensus 105 ~~vA~~~~~~~~~~~~~~~~i~lk~~~-~~~~---~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna 180 (576) T protein:vir:96 105 NQVAMYCQPSRYNERGLGFEVRMRDLD-AEPG---KKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQV 180 (576) T ss_pred HHHHhhhhhhhhccccccceeEEecCc-Cccc---hhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCe Confidence 55543 11222223333 2222 12111111223333322211 1 22357999999999999999 Q ss_pred EEEEEEcCCcccccCcccchhhheecHHHhcc--CCCe-------eEEECCCCCCCcccCCCceEEEEeCCCcccc--cC Q lcl|Aclame:pro 138 WVAILFTDKSRLDSNGNPVPEWLALTPEEVRA--SEKK-------TIIELPTGDKHEFRDGLDGMFRVWNPRARRA--RE 206 (629) Q Consensus 138 wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~--~~~~-------~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra--~e 206 (629) |+.++...++... ..+++.|...-|.. ..++ .-+...+|.........|.++++.+|.+... .. T Consensus 181 ~~~i~~~rd~~g~-----~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~ 255 (576) T protein:vir:96 181 NFEKVFNKKNATT-----MDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGY 255 (576) T ss_pred EEEEEEecCCCCc-----eEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcc Confidence 9988753332211 11233333333321 1111 1122233333333344566767777776432 23 Q ss_pred CccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHH Q lcl|Aclame:pro 207 PDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVA 286 (629) Q Consensus 207 aDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva 286 (629) --||+.++...+.-..-..+...+..+.-..-.|||.+|....+- ....+.|.+.+. T Consensus 256 G~Spi~~a~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls--------------------~e~~~~lr~~~~--- 312 (576) T protein:vir:96 256 GLSEVEIAMKQFIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQS--------------------QRALENFKREWK--- 312 (576) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCC--------------------HHHHHHHHHHHH--- Confidence 579999998888777777777777777777778888887654431 123445555554 Q ss_pred hhcccCccccccccceeeeechHHhcCceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhcccc----------- Q lcl|Aclame:pro 287 QTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGS----------- 354 (629) Q Consensus 287 ~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~----------- 354 (629) .++.-. .-+--+|+|+. ++++.-.+.....+ --+++|+..+..||..|.||| .+||+-. T Consensus 313 -~~~~G~-~nag~~p~vl~------~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp-~~lG~~~~~~~~g~~~~~ 383 (576) T protein:vir:96 313 -SSFSGI-NGSWQVPVVMA------DDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDP-AEIGFPNRGGATGGKGGN 383 (576) T ss_pred -HHhccc-cccccceeecC------CCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCH-HHcccccccccccccccc Confidence 233211 12223566653 23455555444333 448999999999999999999 7778733 Q ss_pred CcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHH Q lcl|Aclame:pro 355 NSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAE 434 (629) Q Consensus 355 ~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~e 434 (629) +.|+.++-+....-++..|.|.+..|+++|++.+|.. .| .+|.|+||-.++...-+.-+ ......+|.+|.+ T Consensus 384 s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~----~~---~~~~~~f~r~d~~~~~e~~~-~~~~~~~G~lT~N 455 (576) T protein:vir:96 384 TLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISE----YS---DKYVFQFVGGDTKSELDKIK-ILQEEVKTYKTVN 455 (576) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh----cc---CceEEEeccCCHHHHHHHHH-HHHHHhcCccCHH Confidence 4478888999999999999999999999999988754 22 46888887655433211111 1224557999999 Q ss_pred HHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccC----CCCCCCCCC--------------- Q lcl|Aclame:pro 435 AMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEF----PTPTVALPP--------------- 495 (629) Q Consensus 435 alr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~----p~p~~a~~p--------------- 495 (629) ++|++.||+.-.+=|. -+.|...+-++......- .++....++ T Consensus 456 E~R~~~gl~piegGD~------------------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (576) T protein:vir:96 456 EARKEKGLKPIEGGDV------------------LLDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQE 517 (576) T ss_pred HHHHHhCCCCCCCcce------------------eccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCC Confidence 9999999975432220 011111111111111110 000000000 Q ss_pred CCCCCCCCcCCCCCCCCCCC-CCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHHHhcccchHhhhhh Q lcl|Aclame:pro 496 AEEQDGDEEASGASRREEPD-TEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPYELRQLSDRELVRR 573 (629) Q Consensus 496 ~~~~~~~~e~~~~~~~~ePd-Te~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~ar~r~ip~h~~hr~ 573 (629) ..++..+++.+..+++.+.+ +-+.+-- ..+.++ ..--+-.++++-+ |..+.. ..+... T Consensus 518 s~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--------~~~~~~----------~~~~~~ 576 (576) T protein:vir:96 518 STEDKVDGRESNDPTKIDSPVGTDGQLK-DQDNVK-SQEGSNKGQGTKG--------KGNEKP----------SDFKNN 576 (576) T ss_pred CCCCcccccccccCCCCCCccccccccC-CCCccc-ccccccccccccc--------cCCCCc----------ccccCC Confidence 00111111111111111110 0000000 000000 0011223333332 111110 000000 No 63 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=99.45 E-value=2.6e-13 Score=89.57 Aligned_cols=393 Identities=16% Similarity=0.144 Sum_probs=197.4 Q ss_pred CCCCcceeEEc-CCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRR-PKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~-pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |.== ...++ .+.++..+ .+..... .+..+.+.+... .+. ..+.+.-.+.-+++++|.+. T Consensus 1 Mg~~--~~f~~k~~~~~~~~-------~~~~~~~---~~~~~~~~~~~~-------~~~-~~~~V~~~I~~ia~~iA~~p 60 (403) T protein:vir:80 1 MGLF--NFFRRKTRSEPTNA-------ISWFLTQ---EAYDTLAIPGYT-------RLS-DNPEVRMAVHKIAELISSMT 60 (403) T ss_pred Cccc--ccccccccccccch-------hhhhccc---ccccccccchhh-------hhh-hhHHHHHHHHHHHHhhhhCc Confidence 5532 22222 11111111 0000000 000001111111 111 24556777888999999977 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeec--CceEEEEEEcCCcccccCcccch Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVA--GETWVAILFTDKSRLDSNGNPVP 157 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVp--GE~wI~il~r~~~~~d~~~~~~~ 157 (629) +..-+-+++ |... ++++ ...+...=--.-+-..++++.++.++-.- |.+||.+.-...|. + . T Consensus 61 ~~~~~~~~~-g~~~--~~~~------~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~------~-~ 124 (403) T protein:vir:80 61 IHLMQNTDN-GDIR--IKNE------LSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGL------I-D 124 (403) T ss_pred eEEEEecCC-ceee--cCCh------HHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCc------E-E Confidence 776554544 5433 2332 33444322233345678888888776655 55676654322232 1 1 Q ss_pred hhheecHHHhc--cCCCeeEEECCCCCCCcccCCCceEEEEe-CCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 158 EWLALTPEEVR--ASEKKTIIELPTGDKHEFRDGLDGMFRVW-NPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 158 eW~~vt~~eI~--~~~~~~~i~lP~g~~h~~~~~~D~~~RvW-~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) +++.|-+.-|. ...++..+.. .| ..|. .|-||++- +++|.....--||+.++.+.+.-.....+...+..+. T Consensus 125 ~L~~l~p~~v~~~~~~~g~~~~y-~~--~~~~--~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n 199 (403) T protein:vir:80 125 ELIPLAPSKVSFVDTDTGYQIWY-QG--KAYN--YDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSG 199 (403) T ss_pred EEEEEcCCeeEEEEcCCceEEEE-ee--cccc--hhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 23344433332 2222211111 01 1122 23455544 5777777777888877666665555555555555555 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) -.+..|||-+|+.++ ....+.+++-+++- +.... -+--++++..+.....++ T Consensus 200 g~~p~~il~~~~~~~----------------------~~~~~~~~~~~~~~----~~~~~--~~g~~~~~~~~~~~~~~~ 251 (403) T protein:vir:80 200 KYMPSLIVKVDAATA----------------------ELSSEEGRNAVFKK----YLEAS--EAGQPWIIPAELLDVEQV 251 (403) T ss_pred cCCcceEEEeCCCCC----------------------hHHHHHHHHHHHHH----Hhhhh--hcCCeeeeccccccccee Confidence 555566776666543 11122333333321 11111 123334444444444444 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) +-+.+ .+.--+++|+..+..||..|.||| .+||+++..+. ... .-++..|.|.++.|+++|++.+|.+ T Consensus 252 ~~l~~---~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~---~~~--~f~~~~l~P~~~~ie~~l~~kll~~--- 319 (403) T protein:vir:80 252 KPLSL---KDLAIHETVELDKRTVAGIFGVPA-FLLGVGKYDKD---EYN--NFINSTILPIAKGIEQELTRKLLIS--- 319 (403) T ss_pred ccCCH---HHHHHHHHHHHhHHHHHHHhCCCH-HHcCCCCccHH---HHH--HHHHHHHHHHHHHHHHHHHHhccCC--- Confidence 44433 233347899999999999999999 77788643322 111 2556789999999999999887743 Q ss_pred hcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchh Q lcl|Aclame:pro 395 REGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) Q Consensus 395 ~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li 471 (629) .+|-|.||.+.|. +.|..+.+ ..+++.|++|.+++|+++|++...+=|- -+.+ - T Consensus 320 ------~~~~~~f~~~~ll-~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~----~~~~---------~--- 376 (403) T protein:vir:80 320 ------PDLYFKFNPRSLY-AYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSE----LVIL---------E--- 376 (403) T ss_pred ------CCcEEEeechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe----Eeec---------c--- Confidence 4477899999985 44544433 4588999999999999999985433220 0000 0 Q ss_pred hhhhhhcccccCccCCCCCCCCCCCC-CCCCCCcCCCCCCCCC Q lcl|Aclame:pro 472 PTLAVLIPELADVEFPTPTVALPPAE-EQDGDEEASGASRREE 513 (629) Q Consensus 472 ~~l~pll~~~~~~~~p~p~~a~~p~~-~~~~~~e~~~~~~~~e 513 (629) .+.|| ..-++ .....+|..++.++.| T Consensus 377 -n~~pl---------------~~~~~~~~~k~ge~~~~~~~~~ 403 (403) T protein:vir:80 377 -NYIPL---------------DKIGDQNKLKGGEKGGADGQTD 403 (403) T ss_pred -cccch---------------hhccchhhccCCCCCCCCCCCC Confidence 01111 00001 1111112222222222 No 64 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=99.43 E-value=1.8e-12 Score=84.97 Aligned_cols=462 Identities=11% Similarity=0.088 Sum_probs=205.3 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhcee---- Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSAS---- 76 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~S---- 76 (629) +|.+.- ....+-+...-++ +-.......++.. -=+.|..-+-|+-.+.=+++.++ T Consensus 55 ~a~~~~-------------~~~~~~~~~~~~~-------~~~~~~~~~~l~~-~l~~~~~n~i~~~~I~t~~~~vA~~~~ 113 (563) T protein:vir:99 55 QAYAEP-------------FIEMMDTNPEFRD-------KRSYMKNEHNLHD-VLKKFGNNPILNAIILTRSNQVAMYCQ 113 (563) T ss_pred Ccchhh-------------hHhhhcccccccc-------cccCCCCcccHHH-HHHHhhcchHHHHHHHHHHHHHHHHhh Confidence 222110 0011111111111 1011111111211 00111111222222222333222 Q ss_pred -----------eeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCC----hhhHHHHHHHHhcceeecCceEEEE Q lcl|Aclame:pro 77 -----------RVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGG----ALGQAQLIKRVVEQLTVAGETWVAI 141 (629) Q Consensus 77 -----------r~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG----~lGQaqLlkr~~~~LtVpGE~wI~i 141 (629) .++|+-...+ ++ .++......+......+.-- ..--.++++.++.++-+-|.+++.+ T Consensus 114 ~~~~~~~~~~~~i~l~~~~~~-----~~---~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~ 185 (563) T protein:vir:99 114 PARYSEKGLGFEVRLRDLDAE-----PG---RKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEK 185 (563) T ss_pred hhhhhcccccceeEEeecCCC-----cc---hhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEE Confidence 3344332221 11 11111112333333333211 1223489999999999999998866 Q ss_pred EE-cCC-cccccCcccchhhheecHHHhcc--CCC-------eeEEECCCCCCCcccCCCceEEEEeCCCcccc--cCCc Q lcl|Aclame:pro 142 LF-TDK-SRLDSNGNPVPEWLALTPEEVRA--SEK-------KTIIELPTGDKHEFRDGLDGMFRVWNPRARRA--REPD 208 (629) Q Consensus 142 l~-r~~-~~~d~~~~~~~eW~~vt~~eI~~--~~~-------~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra--~eaD 208 (629) +. |+. |.. .+.+.|.+..|.. ..+ ..-+...+|.........|.|+++.+|.+... ..-- T Consensus 186 ~~~rd~~G~~-------~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~ 258 (563) T protein:vir:99 186 VFNKNNKTKL-------EKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGL 258 (563) T ss_pred EEEecCCCce-------EEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccc Confidence 43 543 221 1122333333321 111 11233445554444445677777878776433 2356 Q ss_pred cchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhh Q lcl|Aclame:pro 209 SPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQT 288 (629) Q Consensus 209 SPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~t 288 (629) ||+.++.+.+.=..-+.+...+..+.-..-.|||-+|....+- ....+.+.+.|- . T Consensus 259 Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls--------------------~e~~~~~~~~~~----~ 314 (563) T protein:vir:99 259 SEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQS--------------------QHALENFKREWK----S 314 (563) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCC--------------------HHHHHHHHHHHH----H Confidence 8888887777666666666666666666677888877554431 123445555554 2 Q ss_pred cccCccccccccceeeeechHHhcCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhcccc-----------Cc Q lcl|Aclame:pro 289 AYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGS-----------NS 356 (629) Q Consensus 289 Ai~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~-----------~~ 356 (629) ++.-. .-+--+|+|+. ++++.-.+.....+.. +++|+..+..||..|.||| .+||+.. +. T Consensus 315 ~~~G~-~nagk~~~vl~------~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp-~~lG~~~~~~~~~~~~~ss~ 386 (563) T protein:vir:99 315 SLSGI-NGSWQIPVVMA------DDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDP-AEIGFPNRGGATGSKGGSTL 386 (563) T ss_pred Hhccc-cccccceEEcC------CCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCH-HHccccccccccccccccch Confidence 22211 11223565542 2345555544444444 8999999999999999999 7889743 34 Q ss_pred chhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHH Q lcl|Aclame:pro 357 NHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAM 436 (629) Q Consensus 357 NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~eal 436 (629) |..++.+....-++..|.|.+..|+++|++.+|.. .| .+|.|+|+-.+...+-+.. +...+..+|++|.+++ T Consensus 387 ~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~----~~---~~~~~~f~r~D~~~~~e~~-~~~~~~~~G~lT~NE~ 458 (563) T protein:vir:99 387 NEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISE----YG---DKYTFQFVGGDTKSATDKL-NILKLETQIFKTVNEA 458 (563) T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh----cc---cccEEEeccCCHHHHHHHH-HHHHHhcCCccCHHHH Confidence 66677888888899999999999999999998864 22 4688888655444321111 1123577899999999 Q ss_pred HHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccC---CCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 437 VKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEF---PTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 437 r~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~---p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) |++.||.--.+=|. -+.|.-...++....... ..+........ ..++.+.....++ T Consensus 459 R~~~gl~Pi~gGD~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 517 (563) T protein:vir:99 459 REEQGKKPIEGGDI------------------ILDASFLQGTAQLQQDKQYNDGKQKERLQMMM---SLLEGDNDDSEEG 517 (563) T ss_pred HHHhCCCCCCCcce------------------eecccccccccccccccCCCccccchhhhhcc---cccCCCCCCCCCC Confidence 99999974433221 011111111111111110 00000000000 0000000011112 Q ss_pred CCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHHH Q lcl|Aclame:pro 514 PDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPYE 561 (629) Q Consensus 514 PdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~ar 561 (629) ++|+++.++......+......-.-...+.-.-+ |.+....++... T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 563 (563) T protein:vir:99 518 QSTDSSNDDKEIGTDAQIKGDDNVYRTQTSNKGQ--GRKGEKSSDFKH 563 (563) T ss_pred CCCCCCCCccccccccccccccccccccCccccc--cccCcCcccccC Confidence 2221110000000000000000000000000000 000000100000 No 65 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=99.43 E-value=1.8e-12 Score=84.97 Aligned_cols=462 Identities=11% Similarity=0.088 Sum_probs=205.3 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhcee---- Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSAS---- 76 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~S---- 76 (629) +|.+.- ....+-+...-++ +-.......++.. -=+.|..-+-|+-.+.=+++.++ T Consensus 55 ~a~~~~-------------~~~~~~~~~~~~~-------~~~~~~~~~~l~~-~l~~~~~n~i~~~~I~t~~~~vA~~~~ 113 (563) T protein:vir:95 55 QAYAEP-------------FIEMMDTNPEFRD-------KRSYMKNEHNLHD-VLKKFGNNPILNAIILTRSNQVAMYCQ 113 (563) T ss_pred Ccchhh-------------hHhhhcccccccc-------cccCCCCcccHHH-HHHHhhcchHHHHHHHHHHHHHHHHhh Confidence 222110 0011111111111 1011111111211 00111111222222222333222 Q ss_pred -----------eeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCC----hhhHHHHHHHHhcceeecCceEEEE Q lcl|Aclame:pro 77 -----------RVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGG----ALGQAQLIKRVVEQLTVAGETWVAI 141 (629) Q Consensus 77 -----------r~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG----~lGQaqLlkr~~~~LtVpGE~wI~i 141 (629) .++|+-...+ ++ .++......+......+.-- ..--.++++.++.++-+-|.+++.+ T Consensus 114 ~~~~~~~~~~~~i~l~~~~~~-----~~---~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~ 185 (563) T protein:vir:95 114 PARYSEKGLGFEVRLRDLDAE-----PG---RKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEK 185 (563) T ss_pred hhhhhcccccceeEEeecCCC-----cc---hhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEE Confidence 3344332221 11 11111112333333333211 1223489999999999999998866 Q ss_pred EE-cCC-cccccCcccchhhheecHHHhcc--CCC-------eeEEECCCCCCCcccCCCceEEEEeCCCcccc--cCCc Q lcl|Aclame:pro 142 LF-TDK-SRLDSNGNPVPEWLALTPEEVRA--SEK-------KTIIELPTGDKHEFRDGLDGMFRVWNPRARRA--REPD 208 (629) Q Consensus 142 l~-r~~-~~~d~~~~~~~eW~~vt~~eI~~--~~~-------~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra--~eaD 208 (629) +. |+. |.. .+.+.|.+..|.. ..+ ..-+...+|.........|.|+++.+|.+... ..-- T Consensus 186 ~~~rd~~G~~-------~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~ 258 (563) T protein:vir:95 186 VFNKNNKTKL-------EKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGL 258 (563) T ss_pred EEEecCCCce-------EEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccc Confidence 43 543 221 1122333333321 111 11233445554444445677777878776433 2356 Q ss_pred cchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhh Q lcl|Aclame:pro 209 SPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQT 288 (629) Q Consensus 209 SPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~t 288 (629) ||+.++.+.+.=..-+.+...+..+.-..-.|||-+|....+- ....+.+.+.|- . T Consensus 259 Spi~~a~~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls--------------------~e~~~~~~~~~~----~ 314 (563) T protein:vir:95 259 SEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQS--------------------QHALENFKREWK----S 314 (563) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCC--------------------HHHHHHHHHHHH----H Confidence 8888887777666666666666666666677888877554431 123445555554 2 Q ss_pred cccCccccccccceeeeechHHhcCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhcccc-----------Cc Q lcl|Aclame:pro 289 AYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGS-----------NS 356 (629) Q Consensus 289 Ai~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~-----------~~ 356 (629) ++.-. .-+--+|+|+. ++++.-.+.....+.. +++|+..+..||..|.||| .+||+.. +. T Consensus 315 ~~~G~-~nagk~~~vl~------~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp-~~lG~~~~~~~~~~~~~ss~ 386 (563) T protein:vir:95 315 SLSGI-NGSWQIPVVMA------DDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDP-AEIGFPNRGGATGSKGGSTL 386 (563) T ss_pred Hhccc-cccccceEEcC------CCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCH-HHccccccccccccccccch Confidence 22211 11223565542 2345555544444444 8999999999999999999 7889743 34 Q ss_pred chhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHH Q lcl|Aclame:pro 357 NHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAM 436 (629) Q Consensus 357 NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~eal 436 (629) |..++.+....-++..|.|.+..|+++|++.+|.. .| .+|.|+|+-.+...+-+.. +...+..+|++|.+++ T Consensus 387 ~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~----~~---~~~~~~f~r~D~~~~~e~~-~~~~~~~~G~lT~NE~ 458 (563) T protein:vir:95 387 NEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISE----YG---DKYTFQFVGGDTKSATDKL-NILKLETQIFKTVNEA 458 (563) T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh----cc---cccEEEeccCCHHHHHHHH-HHHHHhcCCccCHHHH Confidence 66677888888899999999999999999998864 22 4688888655444321111 1123577899999999 Q ss_pred HHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccC---CCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 437 VKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEF---PTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 437 r~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~---p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) |++.||.--.+=|. -+.|.-...++....... ..+........ ..++.+.....++ T Consensus 459 R~~~gl~Pi~gGD~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 517 (563) T protein:vir:95 459 REEQGKKPIEGGDI------------------ILDASFLQGTAQLQQDKQYNDGKQKERLQMMM---SLLEGDNDDSEEG 517 (563) T ss_pred HHHhCCCCCCCcce------------------eecccccccccccccccCCCccccchhhhhcc---cccCCCCCCCCCC Confidence 99999974433221 011111111111111110 00000000000 0000000011112 Q ss_pred CCCCCCCCCCcccCCCCCchhHHHHHHHHHHHHHHhhcccCChhhHHH Q lcl|Aclame:pro 514 PDTEDDAGTDDSDQASLDSRETAMVEALVFRALELAGKRSRTRSLPYE 561 (629) Q Consensus 514 PdTe~d~~~d~~~~a~~~a~~~a~V~~lv~RALelAGkR~r~r~~~ar 561 (629) ++|+++.++......+......-.-...+.-.-+ |.+....++... T Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 563 (563) T protein:vir:95 518 QSTDSSNDDKEIGTDAQIKGDDNVYRTQTSNKGQ--GRKGEKSSDFKH 563 (563) T ss_pred CCCCCCCCccccccccccccccccccccCccccc--cccCcCcccccC Confidence 2221110000000000000000000000000000 000000100000 No 66 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=99.41 E-value=7.2e-13 Score=87.16 Aligned_cols=391 Identities=13% Similarity=0.058 Sum_probs=186.6 Q ss_pred CCCCcceeEEcCCCCC-CCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEP-VSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~-~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |.==+ |+ +++... ..+| ..+.- .-. ... .++. .. -+... .| ..+-++-.+.=+++.||.+. T Consensus 1 MGl~~-~~--~~~~~~~~~~~-~~~~~----~~~-~~~-~~~~---~~-vt~~~---al-~~~~v~~~i~~Ia~~iA~lp 62 (394) T protein:vir:62 1 MGLRD-RF--SNYLFKKAEKR-GYLDN----VLG-KSI-RYSG---VY-VTDSN---IL-QSSDVYELLQDISNQMVLAD 62 (394) T ss_pred Cchhh-hh--hhhccCCCCch-hhhhh----hhh-ccc-ccCc---cc-cChhh---hh-ccHHHHHHHHHHHHhhcccc Confidence 32110 00 111000 0000 00000 000 000 0000 00 01111 12 34567778889999999998 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..- +.| |.. +.+ .....+....--. +-..++++.++.++.+-|++||.+.-..-+. | T Consensus 63 ~~v~--~~~-g~~---~~~-----~~~~~Ll~~PN~~-~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~----------~ 120 (394) T protein:vir:62 63 IVVE--DEF-GNE---IKD-----DIALQILRNPNNY-LTQSEFIKLMTNTYLLEGETFPILNGAQIHL----------A 120 (394) T ss_pred eEEE--cCC-Ccc---cch-----hhHHHHhccCCCC-CCHHHHHHHHHHHHHhcCCeEEEEecceeec----------c Confidence 8773 333 331 222 2344555555443 4455699999999999999999873211111 2 Q ss_pred heecHHHhccCCCe-eEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhh Q lcl|Aclame:pro 160 LALTPEEVRASEKK-TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIG 238 (629) Q Consensus 160 ~~vt~~eI~~~~~~-~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~g 238 (629) .-++. ...+.. ..+. .+ .++|. .|-||++=.+.+ ....--||+..+.+.+.-..-..+...+..+.-..- T Consensus 121 ~~~~~---~~~~~~~~~~~--~~-~~~~~--~~eiih~r~~~~-d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~ 191 (394) T protein:vir:62 121 SNVFT---ELDDNLVEHFN--IG-GHEIP--PCMIRHVKNIGA-DHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLL 191 (394) T ss_pred ccceE---EECCceEEEEe--eC-CEEec--hhheEEecCcCC-CCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCc Confidence 11211 111111 1111 01 12222 222444422322 223445676555544433332222222222222223 Q ss_pred CceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEE Q lcl|Aclame:pro 239 NGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLK 318 (629) Q Consensus 239 nGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~ 318 (629) .|||-+|..++- ...+.+.+.+.|. ..+.-.+. +-=++|+... .++|... T Consensus 192 ~~il~~~~~~~~--------------------~~~~~~~~~~~~~----~~~~g~~n--~g~~~vl~~g----~~~~~~~ 241 (394) T protein:vir:62 192 TFLLNLDAHINP--------------------QNGAQSKLINAIL----DQLESIDE--ARSVKMIPLG----KGYSIDT 241 (394) T ss_pred ceEEEeCCCCCc--------------------CHHHHHHHHHHHH----HHhccccc--cCceeEeeCC----CceeEEe Confidence 346555544331 0112234444443 22332222 1222333322 2445555 Q ss_pred eCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 319 FDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREG 397 (629) Q Consensus 319 f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG 397 (629) +.....+. -+++|+...+.||..|.||| .+||-+..+ ++-+....-++..|.|.+..|+++|++.+|.+ .+| T Consensus 242 l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~s---n~e~~~~~~~~~~l~P~~~~ie~~l~~kll~~---~~~ 314 (394) T protein:vir:62 242 LKSPLDDEKTLAYLNVYKKDLGKFLGINV-DTYTELIKE---DIEKAMMYIHNKAVRPIMKNFEDHLSLLFYAQ---NSG 314 (394) T ss_pred cCCCcchHHHHHHHHHHHHHHHHHhCCCH-HHcCCCCCc---CHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc---ccc Confidence 55444433 67899999999999999999 666743344 46677777789999999999999999988866 333 Q ss_pred CChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhh Q lcl|Aclame:pro 398 IDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVL 477 (629) Q Consensus 398 ~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pl 477 (629) .+|.|.||...+..--.+.+.+-.++..|++|.+++|+++|++.-.+.+- -+. T Consensus 315 ---~~~~~~fd~~~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~g-----d~~------------------- 367 (394) T protein:vir:62 315 ---KRIKFKINILDFVTYSNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKES-----QAI------------------- 367 (394) T ss_pred ---CceEEEechhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC-----Cee------------------- Confidence 46899999998853223333334588889999999999999995422211 000 Q ss_pred cccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC Q lcl|Aclame:pro 478 IPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTED 518 (629) Q Consensus 478 l~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~ 518 (629) +.+ .+.. +.+......+ ....|.+ .|+ T Consensus 368 --------~~~-~n~~-~~~~~~~~~~--~~kgge~--~en 394 (394) T protein:vir:62 368 --------YIS-NDVT-EIGKKEATDG--SLGGGEE--NEN 394 (394) T ss_pred --------ecc-cccc-cccccccccc--cCCCCCC--CCC Confidence 000 0000 0000000000 0000000 000 No 67 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=99.40 E-value=8.1e-12 Score=81.39 Aligned_cols=484 Identities=13% Similarity=0.090 Sum_probs=215.5 Q ss_pred CCC--CcceeEEcCCCCCCCccccee----eecccc----------------cCcccchhhhhccCCcccchhHHHHHHH Q lcl|Aclame:pro 1 MAP--TSLRIVRRPKSEPVSTRQRAL----VAASQP----------------VENPGKAFRKAMGSSTRTDWQEDAWKAY 58 (629) Q Consensus 1 ma~--t~lr~vr~pk~~~~~~r~r~l----~aAsa~----------------~~~~~~~~kk~~~~~~~~~WQ~eAW~~~ 58 (629) |-- +.-|++-.=..+. .....++ .|-+.+ +-+|. .+++.......+..-..|.+++ T Consensus 27 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~iv~~~i~~~ 104 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSM-ESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQ-DLHKTLKKFGNNIILNAIINTR 104 (574) T ss_pred cccchhhhhhhhccCCCH-HHHHHhHhhhcccccchhhhhccccccccCcCccCCcc-cHHHHHHhhccChhHHHHHHHH Confidence 111 1112211000000 0000000 000000 00111 1222222222233444444443 Q ss_pred hhcchhhhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCCh----hhHHHHHHHHhcceeec Q lcl|Aclame:pro 59 DAVGELRYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGA----LGQAQLIKRVVEQLTVA 134 (629) Q Consensus 59 d~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~----lGQaqLlkr~~~~LtVp 134 (629) - --+-=++..++.+.+.+-+..-.-|.| +.++.... ....++.++.....-.+ .-..++++.+..++-+- T Consensus 105 ~--~~V~~~~~~i~~~ia~lp~~i~~kd~~-~~~~~~~~---~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~ 178 (574) T protein:vir:80 105 S--NQVSMYCKPARNSETGVGYEIRLKDIE-AEPTSHDI---ANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMY 178 (574) T ss_pred H--HHHHHHHHHHHhhhccCceEEEEeccC-CCccchhh---hhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhc Confidence 1 112223444555555554444334433 33332211 11124445554432221 23458999999999999 Q ss_pred CceEEEEEEcCCcccccCcccchhhheecHHHhcc---------CCCeeEEECCCCCCCcccCCCceEEEEeCCCcc--c Q lcl|Aclame:pro 135 GETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRA---------SEKKTIIELPTGDKHEFRDGLDGMFRVWNPRAR--R 203 (629) Q Consensus 135 GE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~---------~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Pr--r 203 (629) |.+||.++-...|.. . +.+.|....|.- ..+.+-+...+|..-......|+++..-+|.+. . T Consensus 179 Gnayi~i~r~~~G~~------~-~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~ 251 (574) T protein:vir:80 179 DQVNFEKVFDKDGNF------I-KFDTVDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIEV 251 (574) T ss_pred CCeEEEEEECCCCcE------E-EEEEEcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCCCccc Confidence 999998874444421 1 122333333321 112233444455443333455655333444332 2 Q ss_pred ccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHH Q lcl|Aclame:pro 204 AREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLF 283 (629) Q Consensus 204 a~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~ 283 (629) -..--||+.++...+.=..-..+...+..+.-..-.|||-++....+ .....+.|.+.|. T Consensus 252 ~~~G~spi~~a~~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~l--------------------s~e~~~~lk~~~~ 311 (574) T protein:vir:80 252 GQYGYPELEIALKQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQ--------------------SQQALDIFRREWR 311 (574) T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCC--------------------CHHHHHHHHHHHH Confidence 22244777777666655555555555555555556777777543221 1223445665554 Q ss_pred HHHhhcccCccccccccceeeeechHHhcCceeEEeCCchh-HHHHHHHHHHHHHHhhhccCchHHhhcccc-------- Q lcl|Aclame:pro 284 QVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVT-EVAIKTRNDAIARLAMGLDVSPERLLGLGS-------- 354 (629) Q Consensus 284 qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvt-e~aiktR~daIrrlA~~lD~~pE~LLGlg~-------- 354 (629) .. -...+. +--+||+.. ++++...+..... .--+++|+..+..||..|.||| .+||+.+ T Consensus 312 ~~-~~G~~n----~g~~~vl~~------~G~~~~~l~~s~~D~qfle~~~~~~~~Ia~afgVPp-~~lG~~~~~t~~gs~ 379 (574) T protein:vir:80 312 SS-LAGING----SWQIPVVSA------EDVKFVNMTPSANDMQFEKWLNYLINVISALYGIDP-AEINFPNNGGATGSK 379 (574) T ss_pred HH-hccccc----cccceeecC------CCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCH-HHhcccccccccccc Confidence 21 111111 123455532 2455555543333 4458999999999999999999 8888733 Q ss_pred --CcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCC Q lcl|Aclame:pro 355 --NSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAIT 432 (629) Q Consensus 355 --~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it 432 (629) +.|..++.+....-++..|.|.+..|+++|++.+|... + ..|.|.||..++... +....+.....+|++| T Consensus 380 ~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~----~---~~~~~~f~~~d~~~~-~~~~~~~~~~~~G~lT 451 (574) T protein:vir:80 380 GGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEF----G---EKYQFQFRGGDLSAQ-LDKLKIIEQEGKVFRT 451 (574) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc----C---CceEEEecccchhhH-HHHHHHHHHHhCCccC Confidence 35778889999999999999999999999999988531 2 458899998887643 2222234467789999 Q ss_pred HHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccC----CCCCCCCCCCCCCCCCCcCCCC Q lcl|Aclame:pro 433 AEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEF----PTPTVALPPAEEQDGDEEASGA 508 (629) Q Consensus 433 ~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~----p~p~~a~~p~~~~~~~~e~~~~ 508 (629) .+++|+++|++.-.+-|.. +++.-..-++......- ........+.+....+ .++ T Consensus 452 ~NE~R~~lgl~Pi~gGD~~------------------~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 510 (574) T protein:vir:80 452 VNEIRHDKGLEPIKGGDVI------------------LNGVHIQAIGQALQEEQLEYQRSQDRLNRLLELSGGD--VEQ- 510 (574) T ss_pred HHHHHHHhCCCCCCCCCEe------------------eeccceeecccccccccCCccchhccccccccccCCC--CCC- Confidence 9999999999865444420 11111000111100000 0000000000000000 000 Q ss_pred CCCCCCCC-CCCC-CCCcccC---CCCCchhHHHHHHHHHHHHHH-------hhcccCChhhHHHhcc Q lcl|Aclame:pro 509 SRREEPDT-EDDA-GTDDSDQ---ASLDSRETAMVEALVFRALEL-------AGKRSRTRSLPYELRQ 564 (629) Q Consensus 509 ~~~~ePdT-e~d~-~~d~~~~---a~~~a~~~a~V~~lv~RALel-------AGkR~r~r~~~ar~r~ 564 (629) +...+|.+ +.|. .+..... .+..+.....++--+.-=-.| ++|.. ...+-++ T Consensus 511 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 574 (574) T protein:vir:80 511 PEPEEPKDSQNDTDVSFQDEQQGLNGKSKKVNGKVDDNVGKDGQLKSEENTNSTKHG----TDGIKKE 574 (574) T ss_pred CCCCCCCCccccccchhhhhhhhhccchhhhcCCccccccccccccccccccccccc----CccccCC Confidence 00111111 1110 0000000 000000000000000000000 01100 1111111 No 68 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=99.38 E-value=1.3e-12 Score=85.75 Aligned_cols=399 Identities=16% Similarity=0.127 Sum_probs=200.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhh-ccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKA-MGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~-~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |+-.. |+-|=|+.=- ...+.-.+..+.++..-+.++ .+.+. .. +-.++-+.-.+.-+++++|.+. T Consensus 1 ~~~~~--~~~~~k~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~----a~~~~~V~~ci~~ia~~ia~lp 66 (409) T protein:vir:96 1 MAKEN--IVTRIKKKLI---DNWIDQSASKLYDFSPWKNKSFWGVIN-----NT----LETNETIFSAITKLSNSMASLP 66 (409) T ss_pred Ccccc--chhhhhhHHh---hhhhccccccccccccccCccccccch-----hh----HhhhHHHHHHHHHHHHhhhhCc Confidence 44332 2222111100 000000111122211111111 11111 11 2235556666788999999998 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..-+-+. ..+++ +..+.+.=.---+-..++++.++.+|-+-|++|+.+.-...| .+. +. T Consensus 67 ~~~~~~~~-------~~~~~------l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G------~~~-~L 126 (409) T protein:vir:96 67 LKMYEDYK-------VVNTE------VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH------QPS-KL 126 (409) T ss_pred eEEeeccc-------ccchh------HHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCC------cEE-EE Confidence 77654221 12221 334443222234456789999999999999999988532222 211 23 Q ss_pred heecHHHhcc----CCCee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 160 LALTPEEVRA----SEKKT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) Q Consensus 160 ~~vt~~eI~~----~~~~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~ 233 (629) +.+..+.|.. .++.+ .+....|....|. ..| ||++=.+++.....--||+.++.+.+.-...+.+. +..+ T Consensus 127 ~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~-~~e-vih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~--~~~~ 202 (409) T protein:vir:96 127 FLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH-NMD-MLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF--NLTE 202 (409) T ss_pred EEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEc-ccc-EEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHH--HHHh Confidence 3444444432 12222 2444555554443 223 55543445555556678877665544322222222 1111 Q ss_pred hHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcC Q lcl|Aclame:pro 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) Q Consensus 234 SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ 313 (629) -...+.+|+-.++.++ ....+.+.+-|.+ .+++.+. ++|+ ++ --+ T Consensus 203 ~~~~~~~i~~~~~~l~----------------------~e~~~~~~~~~~~----~~~n~g~-----~~vl--~~--g~~ 247 (409) T protein:vir:96 203 MQKPDSFMLKYGSNVS----------------------TEKRQQVLEDFKQ----YYEENGG-----ILFQ--EP--GVE 247 (409) T ss_pred cCCCceeEEecCCCCC----------------------HHHHHHHHHHHHH----HhhcCCC-----eeec--CC--Cce Confidence 1111223333333222 1234445555543 2332221 2222 22 234 Q ss_pred ceeEEeCCchhH-HHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 314 VTHLKFDNQVTE-VAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTV 392 (629) Q Consensus 314 ikhL~f~~dvte-~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~ 392 (629) ++.|.+ ...+ --+++|+..+..||..|.||| .|||.+.++|..++-+....=++..|.|.++.|.++|++.+|-+ T Consensus 248 ~~~l~~--~~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~- 323 (409) T protein:vir:96 248 IEPLPK--KYVSEDIVASENLTRERVANVFQLPS-IFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTK- 323 (409) T ss_pred EEEcCC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc- Confidence 555554 3333 347889999999999999999 67787778899999999999999999999999999999988753 Q ss_pred HHhcCCChhheEeeecCccccc-CCC-chHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 393 LMREGIDPNAYVVWHDASQLTV-DPD-KTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 393 Le~eG~d~~~yv~w~DaS~L~~-~Pd-~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) .+.+ ..|.|-||.+.|.. |.. +.+....+++.|++|.+++|+++|++.-.+=|. - + T Consensus 324 ---~~~~-~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~-------~-----------~ 381 (409) T protein:vir:96 324 ---TDRE-KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDK-------P-----------L 381 (409) T ss_pred ---cccc-CcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcce-------e-----------e Confidence 2222 23667789988743 322 222234588999999999999999974422121 0 0 Q ss_pred hhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCC Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTED 518 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~ 518 (629) ++ ....+++-+ ...+.....+|. -..|. T Consensus 382 ~~------~n~~~~~~~------~~~~~~~~gG~~--------n~~e~ 409 (409) T protein:vir:96 382 IS------GDLYPIDTP------LELRKSLKGGDK--------NVNES 409 (409) T ss_pred ec------ccccccccc------hhhcccccCCCC--------CcCCC Confidence 00 000111110 000110111111 11111 No 69 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=99.36 E-value=3.9e-13 Score=88.62 Aligned_cols=272 Identities=15% Similarity=0.126 Sum_probs=172.0 Q ss_pred eeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 75 ASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 75 ~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +|.+-|..-+=+.+ .++ -+..+...-----+...++++.+..++-+-|++|+.++--..|. T Consensus 1 ia~l~~~~~~~~~~-------~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~------ 61 (278) T protein:vir:78 1 MASLPLKMYEDYKV-------VNT------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ------ 61 (278) T ss_pred CccceeEEEecCcc-------ccc------HHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCc------ Confidence 88888777653322 122 13333332122334566799999999999999999876433332 Q ss_pred cchhhheecHHHhccC----CCe--eEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHH Q lcl|Aclame:pro 155 PVPEWLALTPEEVRAS----EKK--TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTI 228 (629) Q Consensus 155 ~~~eW~~vt~~eI~~~----~~~--~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I 228 (629) ..+++.|..+-|... ++. ..+....|...+|. .+-||++=+++|.....-.||+.++...+.......+. T Consensus 62 -~~~l~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~--~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~- 137 (278) T protein:vir:78 62 -PSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH--NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF- 137 (278) T ss_pred -EEEEEEECCceeEEEEcCCCceEEEEEEcCCceEEEEc--cccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHH- Confidence 224555555444422 222 22444444433332 23366665677777777789999998888765544432 Q ss_pred HHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeech Q lcl|Aclame:pro 229 ANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPG 308 (629) Q Consensus 229 ~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~ 308 (629) |..+....+.||+..|..++ ....+.+++.|-+ .+...+ . + ++ +++ T Consensus 138 -~~~~~~~~~~~i~~~~~~l~----------------------~e~~~~~~~~~~~----~~~~~g---~-~-~v--l~~ 183 (278) T protein:vir:78 138 -NLTEMQKPDSFMLKYGSNVG----------------------KEKRQQVLEDFKQ----YYEENG---G-I-LF--QEP 183 (278) T ss_pred -HHHHhcCCCcEEEEeCCCCC----------------------HHHHHHHHHHHHH----HhccCC---C-c-ee--cCC Confidence 44455455666766666544 1234556666543 333221 1 2 22 233 Q ss_pred HHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 309 ELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQV 388 (629) Q Consensus 309 E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~ 388 (629) + -+++.|.+. ..+.--+++|+..++.||.+|.||| .|||...++|+.++-+....-++..|.|.++.|+++|++.+ T Consensus 184 g--~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgVpp-~~lg~~~~~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L 259 (278) T protein:vir:78 184 G--VEIEPLPKK-YVSEDIVASENLTRERVANVFQLPS-VFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 259 (278) T ss_pred C--ceEEEccCC-hhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 3 245666543 2233448889999999999999998 78888778999999999999999999999999999999998 Q ss_pred HHHHHHhcCCChhheEeeecCccc Q lcl|Aclame:pro 389 LRTVLMREGIDPNAYVVWHDASQL 412 (629) Q Consensus 389 lr~~Le~eG~d~~~yv~w~DaS~L 412 (629) |.+. .++ ..|-|=||.+.| T Consensus 260 ~~~~----e~~-~g~~~~f~~~~l 278 (278) T protein:vir:78 260 LTKT----DRE-KIGILNLTLNLI 278 (278) T ss_pred CChh----Hhc-CCceEEEecccC Confidence 7542 111 236688999999 No 70 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=99.34 E-value=1.3e-12 Score=85.70 Aligned_cols=422 Identities=16% Similarity=0.074 Sum_probs=211.7 Q ss_pred ceeEEcCCCCCCCcccceee-eccccc-------------CcccchhhhhccCCcccchhHH-----HHHHHhhcchhhh Q lcl|Aclame:pro 6 LRIVRRPKSEPVSTRQRALV-AASQPV-------------ENPGKAFRKAMGSSTRTDWQED-----AWKAYDAVGELRY 66 (629) Q Consensus 6 lr~vr~pk~~~~~~r~r~l~-aAsa~~-------------~~~~~~~kk~~~~~~~~~WQ~e-----AW~~~d~VgELry 66 (629) ..++.|=++...++-+.++. .+++.- .+|.... +..+....|-.. .++-|-.++-+.- T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~ 77 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQ---TLAGPSTELAPDTFVGLATQAYQANGPVFA 77 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHH---hhccccccccCccccccchhhhhccHHHHH Confidence 23332222222111111111 111110 1111100 000011112211 1333445677788 Q ss_pred hhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCC Q lcl|Aclame:pro 67 YVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDK 146 (629) Q Consensus 67 yvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~ 146 (629) .|.-++++||++-|..-+-+ |+|... +.+ .-...+.+..--.... .++++.+..++-+-|++|+.|+-... T Consensus 78 ~i~~Ia~~ia~lp~~~~~~~-~~~~~~--~~~-----~~~~~L~~~PN~~~t~-~~f~~~l~~~lll~Gnay~~i~r~~~ 148 (466) T protein:vir:81 78 CMLVRQLVFSSVRFRWQRLR-DGKPSD--TFG-----SRDLQILETPWKGGTT-QDMLSRMIQDADLAGNSYWTIVDGEF 148 (466) T ss_pred HHHHHHHhhccCceEEEEec-CCceee--ccc-----cHHHHHhhCCCCCCCH-HHHHHHHHHHHHhcCCeEEEEEecCc Confidence 88999999999988887766 433221 222 1244455555544444 57999999999999999999864333 Q ss_pred ccc--ccCcccchhhheecHHHhccCC--C---eeE--EECC---CCCCCcccCCCceEEEE-eCCCcccccCCccchhh Q lcl|Aclame:pro 147 SRL--DSNGNPVPEWLALTPEEVRASE--K---KTI--IELP---TGDKHEFRDGLDGMFRV-WNPRARRAREPDSPVRA 213 (629) Q Consensus 147 ~~~--d~~~~~~~eW~~vt~~eI~~~~--~---~~~--i~lP---~g~~h~~~~~~D~~~Rv-W~P~Prra~eaDSPVRa 213 (629) +.. +..+. .-+++.|..+-|.... + ... +... .+.+.......| ||++ ..++|.....--||+.+ T Consensus 149 g~l~~~~~g~-~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~d-viHir~~~~~~d~~~G~s~i~~ 226 (466) T protein:vir:81 149 VRMRPDWVDV-VVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAED-VVHFAPIPDPLASYRGMSWLTP 226 (466) T ss_pred cccccccCcc-eeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeecccc-EEEEcCCCCcccccccccHHHH Confidence 332 12222 2346666666554321 1 111 1111 111111122233 4444 34566666677889888 Q ss_pred hHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCc Q lcl|Aclame:pro 214 NLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDE 293 (629) Q Consensus 214 ~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De 293 (629) +.+.+.-..-..+...+..+.-..-.|||-.|+.++ ....+.+.+.|.+.-. ..+. T Consensus 227 ~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l~----------------------~e~~~~~~~~~~~~~~-g~~n- 282 (466) T protein:vir:81 227 ILREIRADQAMSKHQAKFFDNGATVNLVIKHNPMAD----------------------PAAVKKWADEVNSKHA-GVDN- 282 (466) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCC----------------------HHHHHHHHHHHHHHhc-Cccc- Confidence 877766555555555555555555566777666544 1234556655543221 1111 Q ss_pred cccccccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhcccc---CcchhhHhHHhhhhhh Q lcl|Aclame:pro 294 DSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGS---NSNHWSAWQIGDEDVR 370 (629) Q Consensus 294 ~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~---~~NhwsAw~i~de~v~ 370 (629) +--|+|+. + --+++.|.+.. .+.--+++|+..+..||+.|.||| .+||+-. .++..++.++...=++ T Consensus 283 ----~g~~~vl~--~--g~~~~~l~~~~-~d~q~le~~~~~~~~Ia~~fgVPp-~~lG~~~~~~~st~sn~eq~~~~f~~ 352 (466) T protein:vir:81 283 ----AWKNLNLY--P--GADADVVGSNL-QEIDFKNVRGGGETRIAAAAGVPP-VIVGLSEGLAAATYSNYGQARRRLAD 352 (466) T ss_pred ----cccceEcC--C--CceEEEccCCh-hHHHHHHHHHHHHHHHHHHhCCCH-HHcccccCCCccccccHHHHHHHHHH Confidence 22234432 2 23566666533 233348899999999999999999 8888632 3445567888888889 Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH--------H-HHHHcCCCCHHHHHHHhC Q lcl|Aclame:pro 371 LHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA--------R-DAFDRGAITAEAMVKMLG 441 (629) Q Consensus 371 ~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA--------~-~~~~~G~it~ealr~~~G 441 (629) ..|.|.++.|+++|++.++.+ .++ .+|-|=||..+|...--++... + .+...| ||.+++|.... T Consensus 353 ~tl~P~~~~ie~~l~~~L~~~---~~~---~~~~~~f~~~~llr~d~~~r~~~~~~~~~~~~~~~~~g-~t~nE~r~~~~ 425 (466) T protein:vir:81 353 GTAHPLWQNLSGCIGHVMPDM---GPD---VRLWYDADDVPFLREDEKDAADIQKVRAETINTLITAG-YEPESVVAAVN 425 (466) T ss_pred HHHHHHHHHHHHHHHhhcCCc---ccC---cceEEEecchhhhccCHHHHHHHHHHHHHHHHHHHHcC-CChhhcccccc Confidence 999999999999999988764 222 2355667888877652222211 1 134456 58888886654 Q ss_pred CCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 442 LADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDA 520 (629) Q Consensus 442 l~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~ 520 (629) .++.--+ ...+ +.|+ ...++.+.++...++ +...| .++++- T Consensus 426 ~gd~~~~---~~~~------------------~~~~-------------~~~~~~~~~~~~~~~-~~~~G---g~~ngn 466 (466) T protein:vir:81 426 SGDLRLL---KHTG------------------LTSV-------------QLLPPGVSASASSDT-PTSGG---ADDNGN 466 (466) T ss_pred CCccccc---cCCC------------------cchh-------------hhcccccccccCCCC-cccCC---CCcCCC Confidence 3322100 0000 0000 000111111000000 00000 011111 No 71 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=99.30 E-value=9.9e-12 Score=80.90 Aligned_cols=400 Identities=11% Similarity=0.117 Sum_probs=188.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhh--ccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKA--MGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~--~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |. |..+.+. |..+ .+..+....++.. +.+......-.+ ..+ ...-+.-.|.-+++++|++ T Consensus 1 Mg-----~f~~~~~-------r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~al-~~~~v~~cv~~Ia~~iA~~ 62 (416) T protein:vir:45 1 MG-----IFYKNEK-------RDLQ---YNEDDLQMMVQTLPGFQGTKLRQYKDI--EAI-RHSDIFTAVMMIASDLARM 62 (416) T ss_pred CC-----ccccccc-------cccc---CCCcchhHHHHHhccccccCccccchh--hhh-cchHHHHHHHHHHHhhccC Confidence 32 2222110 0000 0000000001000 000000000000 000 0111222466789999998 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .|..- .+ |. ...+ ..+..+...=-.--+-..++++.++.+|.+-|++|+.+.--..| .+ .+ T Consensus 63 p~~~~---~~-~~----~~~~----~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G------~~-~~ 123 (416) T protein:vir:45 63 PIRVT---VN-GQ----INYS----DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG------EP-MN 123 (416) T ss_pred ceEEe---cC-cc----cccc----chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC------cE-EE Confidence 87643 23 32 2221 12444444333344567789999999999999999987532223 21 12 Q ss_pred hheecHHHhc--cCCCeeE---EECCCCCCCcc---cCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHH Q lcl|Aclame:pro 159 WLALTPEEVR--ASEKKTI---IELPTGDKHEF---RDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIA 229 (629) Q Consensus 159 W~~vt~~eI~--~~~~~~~---i~lP~g~~h~~---~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~ 229 (629) ++.|.++.|. ..+++.. +..-++..+.+ ....|++ ||.. +-....--||+.++.+.+.=..-..+... T Consensus 124 L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~---~~d~~~G~s~i~~~~~~i~~~~~~~~~~~ 200 (416) T protein:vir:45 124 LTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFY---SLDGINGLSLLDTLSRTIESDNNGKDFLN 200 (416) T ss_pred EEEEcCceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccC---CCCCccccCHHHHHHHHHHHHHHHHHHHH Confidence 4444444332 2222211 11112111111 1233443 4433 22334566787777666654444455555 Q ss_pred HHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechH Q lcl|Aclame:pro 230 NASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGE 309 (629) Q Consensus 230 naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E 309 (629) +..+.-..-.|||-+|+.+.= .-+.+.+.+.|.+.-. ..+..+ -|+|+ ++. T Consensus 201 ~~f~ng~~~~gil~~~~~~~~---------------------~~~~~~~~~~~~~~~~-g~~nag-----~~~vl--~~g 251 (416) T protein:vir:45 201 NFLRNGTHAGGILKMKGVLDN---------------------KKARDRAREEFHKSFS-GTKQAG-----KVVVL--DES 251 (416) T ss_pred HHHhccCCCcEEEEeCCCCCC---------------------HHHHHHHHHHHHHHhc-CccccC-----ceeec--CCC Confidence 555555556677777654431 1233445444442221 111111 23333 222 Q ss_pred HhcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 310 LIKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQV 388 (629) Q Consensus 310 ~i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~ 388 (629) .+++.|.+. ..+. -+++|+.+...||..|.||| .|||+. +.|. +..+..- .+...|.|.+..|+++|++.+ T Consensus 252 --~~~~~l~~~--~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~-~~~~-~~~~~~~-~~~~~l~P~~~~ie~~ln~~l 323 (416) T protein:vir:45 252 --MTFDQLEVD--TEVLKLIRENKSSTREIAGVFGIPL-HKFGIE-TANM-SITDANL-DYLSTLKPYITCVCAELNFKF 323 (416) T ss_pred --ceeEeccCC--HHHHHHHHHHHHHHHHHHHHhCCCH-HHcCCC-CCCc-cHHHHHH-HHHHHHHHHHHHHHHHHhhhc Confidence 245555553 3333 37899999999999999999 678973 4432 3334333 344579999999999999886 Q ss_pred HHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 389 LRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVG 465 (629) Q Consensus 389 lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~ 465 (629) +... ..|-|.||.+.|..- |..+.+ ..++..|++|.+++|+++||+--.+.|.... T Consensus 324 ~~~~--------~~~~~~f~~~~l~~~-D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~------------ 382 (416) T protein:vir:45 324 NDEY--------VNREFKFDTTEIRVV-DEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIH------------ 382 (416) T ss_pred cccc--------cCceEEEechhhhcc-CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceE------------ Confidence 5431 246679999998542 333333 3388899999999999999986544442000 Q ss_pred cCcchhhhhhhhcccccCccC-CCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 466 QDPNLLPTLAVLIPELADVEF-PTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 466 ~~P~Li~~l~pll~~~~~~~~-p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) +++ ....+++. ++.+..... .......|-+ ..| T Consensus 383 ----~~~------~n~~~~~~~~~~~~~~~~----~~~~~~kgGe-~n~ 416 (416) T protein:vir:45 383 ----RVD------LNHVNIELVDEYQMNKSR----ATDKKLKGGE-ENE 416 (416) T ss_pred ----eec------ccccccccccccCccccc----ccccccCCCC-CCC Confidence 000 00000110 000000000 0000000000 000 No 72 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=99.30 E-value=9.9e-12 Score=80.90 Aligned_cols=400 Identities=11% Similarity=0.117 Sum_probs=188.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhh--ccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKA--MGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~--~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |. |..+.+. |..+ .+..+....++.. +.+......-.+ ..+ ...-+.-.|.-+++++|++ T Consensus 1 Mg-----~f~~~~~-------r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~al-~~~~v~~cv~~Ia~~iA~~ 62 (416) T protein:vir:81 1 MG-----IFYKNEK-------RDLQ---YNEDDLQMMVQTLPGFQGTKLRQYKDI--EAI-RHSDIFTAVMMIASDLARM 62 (416) T ss_pred CC-----ccccccc-------cccc---CCCcchhHHHHHhccccccCccccchh--hhh-cchHHHHHHHHHHHhhccC Confidence 32 2222110 0000 0000000001000 000000000000 000 0111222466789999998 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .|..- .+ |. ...+ ..+..+...=-.--+-..++++.++.+|.+-|++|+.+.--..| .+ .+ T Consensus 63 p~~~~---~~-~~----~~~~----~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G------~~-~~ 123 (416) T protein:vir:81 63 PIRVT---VN-GQ----INYS----DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTG------EP-MN 123 (416) T ss_pred ceEEe---cC-cc----cccc----chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCC------cE-EE Confidence 87643 23 32 2221 12444444333344567789999999999999999987532223 21 12 Q ss_pred hheecHHHhc--cCCCeeE---EECCCCCCCcc---cCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHH Q lcl|Aclame:pro 159 WLALTPEEVR--ASEKKTI---IELPTGDKHEF---RDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIA 229 (629) Q Consensus 159 W~~vt~~eI~--~~~~~~~---i~lP~g~~h~~---~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~ 229 (629) ++.|.++.|. ..+++.. +..-++..+.+ ....|++ ||.. +-....--||+.++.+.+.=..-..+... T Consensus 124 L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~evihir~~---~~d~~~G~s~i~~~~~~i~~~~~~~~~~~ 200 (416) T protein:vir:81 124 LTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFY---SLDGINGLSLLDTLSRTIESDNNGKDFLN 200 (416) T ss_pred EEEEcCceeEEEECCCccEEEEEEEecCCCceeEEEEccccEEEeccC---CCCCccccCHHHHHHHHHHHHHHHHHHHH Confidence 4444444332 2222211 11112111111 1233443 4433 22334566787777666654444455555 Q ss_pred HHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechH Q lcl|Aclame:pro 230 NASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGE 309 (629) Q Consensus 230 naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E 309 (629) +..+.-..-.|||-+|+.+.= .-+.+.+.+.|.+.-. ..+..+ -|+|+ ++. T Consensus 201 ~~f~ng~~~~gil~~~~~~~~---------------------~~~~~~~~~~~~~~~~-g~~nag-----~~~vl--~~g 251 (416) T protein:vir:81 201 NFLRNGTHAGGILKMKGVLDN---------------------KKARDRAREEFHKSFS-GTKQAG-----KVVVL--DES 251 (416) T ss_pred HHHhccCCCcEEEEeCCCCCC---------------------HHHHHHHHHHHHHHhc-CccccC-----ceeec--CCC Confidence 555555556677777654431 1233445444442221 111111 23333 222 Q ss_pred HhcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 310 LIKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQV 388 (629) Q Consensus 310 ~i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~ 388 (629) .+++.|.+. ..+. -+++|+.+...||..|.||| .|||+. +.|. +..+..- .+...|.|.+..|+++|++.+ T Consensus 252 --~~~~~l~~~--~~d~q~~e~~~~~~~~Ia~~fgVPp-~~lg~~-~~~~-~~~~~~~-~~~~~l~P~~~~ie~~ln~~l 323 (416) T protein:vir:81 252 --MTFDQLEVD--TEVLKLIRENKSSTREIAGVFGIPL-HKFGIE-TANM-SITDANL-DYLSTLKPYITCVCAELNFKF 323 (416) T ss_pred --ceeEeccCC--HHHHHHHHHHHHHHHHHHHHhCCCH-HHcCCC-CCCc-cHHHHHH-HHHHHHHHHHHHHHHHHhhhc Confidence 245555553 3333 37899999999999999999 678973 4432 3334333 344579999999999999886 Q ss_pred HHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHh Q lcl|Aclame:pro 389 LRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVG 465 (629) Q Consensus 389 lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~ 465 (629) +... ..|-|.||.+.|..- |..+.+ ..++..|++|.+++|+++||+--.+.|.... T Consensus 324 ~~~~--------~~~~~~f~~~~l~~~-D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~------------ 382 (416) T protein:vir:81 324 NDEY--------VNREFKFDTTEIRVV-DEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIH------------ 382 (416) T ss_pred cccc--------cCceEEEechhhhcc-CHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceE------------ Confidence 5431 246679999998542 333333 3388899999999999999986544442000 Q ss_pred cCcchhhhhhhhcccccCccC-CCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 466 QDPNLLPTLAVLIPELADVEF-PTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 466 ~~P~Li~~l~pll~~~~~~~~-p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) +++ ....+++. ++.+..... .......|-+ ..| T Consensus 383 ----~~~------~n~~~~~~~~~~~~~~~~----~~~~~~kgGe-~n~ 416 (416) T protein:vir:81 383 ----RVD------LNHVNIELVDEYQMNKSR----ATDKKLKGGE-ENE 416 (416) T ss_pred ----eec------ccccccccccccCccccc----ccccccCCCC-CCC Confidence 000 00000110 000000000 0000000000 000 No 73 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=99.25 E-value=9.3e-12 Score=81.07 Aligned_cols=372 Identities=13% Similarity=0.111 Sum_probs=193.6 Q ss_pred CCCCcceeEEcCCCCCC--CcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPV--STRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~--~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |. +.++=+.... ...+....- ...+... ..+.. ...-....|+ ..+-+.-.+.=+++.+|.+ T Consensus 1 M~-----~f~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~-~~~v~~~~al----~~~~v~~~i~~ia~~ia~~ 64 (386) T protein:vir:49 1 MP-----IFNITNLATESPPINQESFFD----IADSDFL--ASLNS-SEWVSAENAL----KNSDLFSIISQLSNDLATA 64 (386) T ss_pred Cc-----hhhhhccCCCCcccchhhhhh----hhhcccc--ccccC-Cceechhhhh----ccHHHHHHHHHHHHHhhhC Confidence 33 2222111111 000000000 0000000 00000 0000111222 1344555677789999998 Q ss_pred EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchh Q lcl|Aclame:pro 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) Q Consensus 79 rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~e 158 (629) .+..-+-+.+ .-...||+ -+-..++++.+..+|-+-|++|+.+.--..|+ +. + T Consensus 65 p~~~~~~~~~-----~l~~~PN~---------------~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~------~~-~ 117 (386) T protein:vir:49 65 KITTSRKQLQ-----GIVDNPSN---------------NANRFNFYQSIFAQMLLGGEAFAYRWRNDNGR------DM-K 117 (386) T ss_pred ceeeccchhh-----hhhhccCC---------------CCCHHHHHHHHHHHhhhcCCEEEEEEECCCCc------EE-E Confidence 8876543322 11112222 23557899999999999999999886433332 11 2 Q ss_pred hheecHHHhc--cC--CCeeE--EEC--CCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 159 WLALTPEEVR--AS--EKKTI--IEL--PTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIAN 230 (629) Q Consensus 159 W~~vt~~eI~--~~--~~~~~--i~l--P~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~n 230 (629) ++.|-.+.|. .. ++... +.. +.+.........| ||++=.+.+.....--||+.++.+.+.=.....+...+ T Consensus 118 l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~e-vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~ 196 (386) T protein:vir:49 118 WEYLRPSQVSFNRLDNQNGLYYNITFDDPHIAPKQHVPQND-ILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTIS 196 (386) T ss_pred EEEecCceeEEEEcCCCceEEEEEEEcCccccceeEEcccc-EEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHH Confidence 4444444332 21 12121 222 2233333333344 45554555555556779999999988877888888888 Q ss_pred HHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHH Q lcl|Aclame:pro 231 ASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGEL 310 (629) Q Consensus 231 aa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~ 310 (629) ..+.-.+..|||.+|+.++= .....+...+.+- . ..+--++|+ ++. T Consensus 197 ~~~ng~~~~~il~~~~~~~~----------------------~~~~~~~~~~~~~----~-----~n~g~~~vl--~~g- 242 (386) T protein:vir:49 197 ALKNALNANGILKIKGGGLL----------------------DFKTKVSRSRQAM----K-----QMQGGPLVL--DDL- 242 (386) T ss_pred HHHccCCccEEEEeCCCCCh----------------------HHHHHHHHHHHHh----c-----cCCCCceec--CCC- Confidence 88888999999999876651 1122233322221 1 112234444 332 Q ss_pred hcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 311 IKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVL 389 (629) Q Consensus 311 i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~l 389 (629) -+++.|.+ ...+. -+++|+..+..||..|.||| .+||+ +..|+.++-++ ++-.+..|.|.++.|++.|.+.++ T Consensus 243 -~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgVPp-~~lg~-~~~~~~~~~~~-~~~~~~~i~~~l~~i~~~~~~~l~ 316 (386) T protein:vir:49 243 -EDFTPLEI--KSNVAQLLSQADWTTGQFAKVYGIPE-SIVGG-DGDQQSSLEMI-YNIYFKSVSRYLRPFVSEMSKKLS 316 (386) T ss_pred -ceEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCC-CCCccchHHHH-HHHHHHHHHHHHHHHHHHHHHHhc Confidence 25555554 33333 47899999999999999999 67786 45566555555 455667799999999999988776 Q ss_pred HHHHHhcCCChhheEeeecCcccc-cCCC-chHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcC Q lcl|Aclame:pro 390 RTVLMREGIDPNAYVVWHDASQLT-VDPD-KTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQD 467 (629) Q Consensus 390 r~~Le~eG~d~~~yv~w~DaS~L~-~~Pd-~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~ 467 (629) .+ +-||...+. .|+. +......+++.|++|..++|.++|-. +|. +.| T Consensus 317 ~~-------------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~---~~~--~~~------------- 365 (386) T protein:vir:49 317 CE-------------VDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQA---EIL--PKE------------- 365 (386) T ss_pred ch-------------hcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhC---CCC--CCc------------- Confidence 43 224444432 2221 22333458899999999999988622 121 111 Q ss_pred cchhhhhhhhcccccCccCCCC-CCCCCCCCCCCCCCcCCCCCCCCCCCCCC Q lcl|Aclame:pro 468 PNLLPTLAVLIPELADVEFPTP-TVALPPAEEQDGDEEASGASRREEPDTED 518 (629) Q Consensus 468 P~Li~~l~pll~~~~~~~~p~p-~~a~~p~~~~~~~~e~~~~~~~~ePdTe~ 518 (629) +|.. .+..++.+.-++++ ++ T Consensus 366 ------------------~~~~~~~~~~~~~gGd~~~-------------~~ 386 (386) T protein:vir:49 366 ------------------LPDGKNPNRTSLKGGEINE-------------QD 386 (386) T ss_pred ------------------CcchhccCCCCCCCCCCCC-------------CC Confidence 0000 00001111111111 11 No 74 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=99.22 E-value=7.4e-11 Score=76.14 Aligned_cols=369 Identities=15% Similarity=0.151 Sum_probs=181.7 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhcc---CCcccchhHHHHHHHhhcchhhhhhhhhhhceee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMG---SSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASR 77 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~---~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr 77 (629) |- +..+- +.|.++.+ ...-..|+.+.= .|. ..=++-.|.-+++++|. T Consensus 1 Mg-----~f~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~v~~IA~~iA~ 50 (378) T protein:vir:94 1 MN-----LFGKV-----------------------VSFSRGKLNNDTQRVTAWQNEAV-EYT-SAFVTNIHNKIANEITK 50 (378) T ss_pred CC-----ccccc-----------------------hhcccccccCCcceeeeeccchh-HHH-HHHHHHHHHHHHhhhhh Confidence 11 11110 00111100 001122444321 111 11134457889999999 Q ss_pred eEEEEEeecCCCCCC-C--CCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 78 VRLIASAIDPDTGLP-T--GSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 78 ~rL~aseiD~DtG~p-t--g~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +.+..=..+...|.. . -.+++ .+..+...-----+-..++++.+..++..-|++||.++.++.. T Consensus 51 lp~~~~~~~~~~~~~~~~~~~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~------- 117 (378) T protein:vir:94 51 VEFNHVKYKKSDVGSDTLISMAGS------DLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNT------- 117 (378) T ss_pred CceeeEEEcccCcccccccccccc------hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCC------- Confidence 887544444332221 1 01122 2344444323345567789999999999999999987644321 Q ss_pred cchhhheecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 155 PVPEWLALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 155 ~~~eW~~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) ++.....|.+...+|. .|-|||+=+|. .-..--||+..+...+. ++.++ T Consensus 118 -----------------g~~~~l~p~~~~~~~~--~~diiH~~~~~--~~~~g~s~l~~~~~~i~----------~~~~~ 166 (378) T protein:vir:94 118 -----------------GELLDLLFADDKKEYK--PEELVRLTSPF--YINEDTSILDNALASIQ----------TKLEQ 166 (378) T ss_pred -----------------ceEEEEEecCCeeEee--eeeeEEecCcC--CccchhHHHHHHHHHHH----------HHHhc Confidence 1122223443333332 12355553443 33345566655554432 22222 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) -- =+|||-+|..++ ..+.+.+.+-|.+--+......+ +.. ++++ ++ -.++ T Consensus 167 ~~-~~gil~~~~~l~----------------------~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~vl--~~--g~~~ 216 (378) T protein:vir:94 167 GK-LRGLLKINAFLD----------------------IDNTQEYREKALTTIKNMQEGSS-YNG--LTPV--DN--KTEI 216 (378) T ss_pred cc-ccceeeeCCcCC----------------------HHHHHHHHHHHHHHHHHhhcccc-ccc--ceec--CC--CceE Confidence 11 247776665544 11223333333322112222211 112 2232 22 2356 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) +.|.+.... ..+..++.....||..|.|||..|-| +.++ +....-++..|.|.+..|+++|++.+|.+-=. T Consensus 217 ~~l~~~~~~--~~~~~~~~~~~~Ia~~fgVP~~~l~~--~~se-----~~~~~f~~~tL~P~~~~ie~~l~~~Ll~~~er 287 (378) T protein:vir:94 217 VELKKDYSV--LNKDEIDLIKSELLTGYFMNENILLG--TASQ-----EQQIYFYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) T ss_pred EEccCChhh--hhHHHHHHHHHHHHHHhCCCHHHhcC--ChHH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHh Confidence 666665443 44567778889999999999965533 2322 34445677889999999999999999976433 Q ss_pred hcCCChhheE-eeecCcccccC-C-CchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchh Q lcl|Aclame:pro 395 REGIDPNAYV-VWHDASQLTVD-P-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) Q Consensus 395 ~eG~d~~~yv-~w~DaS~L~~~-P-d~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li 471 (629) ..|....-|+ +.||.+.|..- + ++.+....++..|++|.+++|+++|++.-.+-|. ++ T Consensus 288 ~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~-------------------~~ 348 (378) T protein:vir:94 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV-------------------YI 348 (378) T ss_pred hhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe-------------------ee Confidence 3444333333 56888888653 1 2233335688999999999999999996655431 00 Q ss_pred hhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 472 PTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAG 521 (629) Q Consensus 472 ~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~ 521 (629) .|+ ...+++-+ ++......+..+..|++-- T Consensus 349 ---~~~--n~~~~~~~---------------~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 349 ---ANL--NAVAVKNL---------------SDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred ---ecc--cccccccc---------------hhhcCCcCCCCCCCCCCCC Confidence 000 00111100 0000001111111111110 No 75 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=99.22 E-value=6.9e-11 Score=76.28 Aligned_cols=388 Identities=10% Similarity=0.076 Sum_probs=176.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.== -|+-++-+. .....+- .. +..-..+.|-+..-++-.+.-+++.+|++.+ T Consensus 1 Mg~f-~~lf~~~~~-------------~~~~~~~-~~------------~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~ 53 (395) T protein:vir:10 1 MSIL-EKIFKTRKD-------------ITYMLDL-DM------------IEDLSQQAYVKRLAIDSCIEFVARAVAQSHF 53 (395) T ss_pred Cchh-hhhhccCcc-------------ccccccc-hh------------ccccchhhhhhhHHHHHHHHHHHHhhcccee Confidence 2210 011111000 0000000 00 0000111222455567778889999999987 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..=+ ++. ..++ .+..+...=--.-+-..++++.+..+|-.-|+.++++. +..+.. +. ++. T Consensus 54 ~~~~----~~~---~~~~------~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~-~~~~~~-----~~-~~~ 113 (395) T protein:vir:10 54 KVLE----GNR---IQKN------DVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVS-DSKELL-----IA-DSF 113 (395) T ss_pred Eecc----CCc---cccc------hHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEe-cCCCeE-----ec-CCc Confidence 6532 111 1112 13333332222345566788999999999998876552 222211 11 111 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCc Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnG 240 (629) .++...+... ....+..-.+.........| ||++=..++.-...-.||+.++...+.-.. ++-+.=..-.| T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e-vih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~g 184 (395) T protein:vir:10 114 YREEYALYDD-IFKDVTVKDYTYQRTFTMQE-VIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRG 184 (395) T ss_pred cceeEeecCc-ceeEEEEcCceeeeeecccc-EEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCce Confidence 1111111100 00011111111111112233 444422333333445677766554432111 11111111225 Q ss_pred eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeC Q lcl|Aclame:pro 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) Q Consensus 241 vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~ 320 (629) +|.+|+... ...+.+.+...+-+-- .+. +.++ ..| +..++ --+++-|.+. T Consensus 185 ii~~~~~~~---------------------~~e~~~~~~~~~~~~~-~~~-~~~~----~~v-~~l~~--g~~~~~l~~~ 234 (395) T protein:vir:10 185 ILKSASSAY---------------------DEKNIEKLQAFTNKLF-NTF-NKNQ----LAI-APLIE--GFDYEELSNG 234 (395) T ss_pred EEEeCCCCC---------------------CHHHHHHHHHHHHHHh-ccc-cccC----cce-EEcCC--Cceeeecccc Confidence 555554321 1224444555443211 111 1111 112 11222 2344455543 Q ss_pred C---chhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 321 N---QVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMRE 396 (629) Q Consensus 321 ~---dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~e 396 (629) . +.++. -+++|+..+..||..|.|||. +|| |+. .++-+....=++..|.|.+..|+++|++.+|.+... T Consensus 235 ~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~-~l~-~~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~-- 307 (395) T protein:vir:10 235 GKNSNMPFSELSELMRDAIKNVALMIGIPPG-LIY-GET---ADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMY-- 307 (395) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhCCCHH-Hhc-Ccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhh-- Confidence 2 33333 388999999999999999995 556 333 346777777788899999999999999998765322 Q ss_pred CCChhheEeeecCcccccCCCchHH---HHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhh Q lcl|Aclame:pro 397 GIDPNAYVVWHDASQLTVDPDKTDE---ARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPT 473 (629) Q Consensus 397 G~d~~~yv~w~DaS~L~~~Pd~t~e---A~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~ 473 (629) ..| +.||.+.|. ++|..+. ...++..|++|.+++|.++|++--.+... .+-+ + T Consensus 308 ----~~~-~~f~~~~l~-~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~--d~~~--------------~-- 363 (395) T protein:vir:10 308 ----LKD-TRIEIVGVN-KKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPEL--DEYL--------------I-- 363 (395) T ss_pred ----ccc-ceecchhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC--ceee--------------e-- Confidence 112 367878774 3343332 34488999999999999999986544311 0000 0 Q ss_pred hhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 474 LAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 474 l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) |..-......++.+.... ..+..|.+.+..+| T Consensus 364 -------------~~n~~~~~~~~~~~~~~~-~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 364 -------------TKNYEKANSGENDEKEKD-ENTLKGGDEDESGD 395 (395) T ss_pred -------------ccccccccccccccCccc-ccccCCCCCCCCCC Confidence 100000001111111111 11222333333333 No 76 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=99.22 E-value=6.9e-11 Score=76.28 Aligned_cols=388 Identities=10% Similarity=0.076 Sum_probs=176.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.== -|+-++-+. .....+- .. +..-..+.|-+..-++-.+.-+++.+|++.+ T Consensus 1 Mg~f-~~lf~~~~~-------------~~~~~~~-~~------------~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~ 53 (395) T protein:vir:95 1 MSIL-EKIFKTRKD-------------ITYMLDL-DM------------IEDLSQQAYVKRLAIDSCIEFVARAVAQSHF 53 (395) T ss_pred Cchh-hhhhccCcc-------------ccccccc-hh------------ccccchhhhhhhHHHHHHHHHHHHhhcccee Confidence 2210 011111000 0000000 00 0000111222455567778889999999987 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..=+ ++. ..++ .+..+...=--.-+-..++++.+..+|-.-|+.++++. +..+.. +. ++. T Consensus 54 ~~~~----~~~---~~~~------~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~-~~~~~~-----~~-~~~ 113 (395) T protein:vir:95 54 KVLE----GNR---IQKN------DVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVS-DSKELL-----IA-DSF 113 (395) T ss_pred Eecc----CCc---cccc------hHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEe-cCCCeE-----ec-CCc Confidence 6532 111 1112 13333332222345566788999999999998876552 222211 11 111 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCc Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnG 240 (629) .++...+... ....+..-.+.........| ||++=..++.-...-.||+.++...+.-.. ++-+.=..-.| T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e-vih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~g 184 (395) T protein:vir:95 114 YREEYALYDD-IFKDVTVKDYTYQRTFTMQE-VIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRG 184 (395) T ss_pred cceeEeecCc-ceeEEEEcCceeeeeecccc-EEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCce Confidence 1111111100 00011111111111112233 444422333333445677766554432111 11111111225 Q ss_pred eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeC Q lcl|Aclame:pro 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) Q Consensus 241 vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~ 320 (629) +|.+|+... ...+.+.+...+-+-- .+. +.++ ..| +..++ --+++-|.+. T Consensus 185 ii~~~~~~~---------------------~~e~~~~~~~~~~~~~-~~~-~~~~----~~v-~~l~~--g~~~~~l~~~ 234 (395) T protein:vir:95 185 ILKSASSAY---------------------DEKNIEKLQAFTNKLF-NTF-NKNQ----LAI-APLIE--GFDYEELSNG 234 (395) T ss_pred EEEeCCCCC---------------------CHHHHHHHHHHHHHHh-ccc-cccC----cce-EEcCC--Cceeeecccc Confidence 555554321 1224444555443211 111 1111 112 11222 2344455543 Q ss_pred C---chhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 321 N---QVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMRE 396 (629) Q Consensus 321 ~---dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~e 396 (629) . +.++. -+++|+..+..||..|.|||. +|| |+. .++-+....=++..|.|.+..|+++|++.+|.+... T Consensus 235 ~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~-~l~-~~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~-- 307 (395) T protein:vir:95 235 GKNSNMPFSELSELMRDAIKNVALMIGIPPG-LIY-GET---ADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMY-- 307 (395) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhCCCHH-Hhc-Ccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhh-- Confidence 2 33333 388999999999999999995 556 333 346777777788899999999999999998765322 Q ss_pred CCChhheEeeecCcccccCCCchHH---HHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhh Q lcl|Aclame:pro 397 GIDPNAYVVWHDASQLTVDPDKTDE---ARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPT 473 (629) Q Consensus 397 G~d~~~yv~w~DaS~L~~~Pd~t~e---A~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~ 473 (629) ..| +.||.+.|. ++|..+. ...++..|++|.+++|.++|++--.+... .+-+ + T Consensus 308 ----~~~-~~f~~~~l~-~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~--d~~~--------------~-- 363 (395) T protein:vir:95 308 ----LKD-TRIEIVGVN-KKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPEL--DEYL--------------I-- 363 (395) T ss_pred ----ccc-ceecchhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC--ceee--------------e-- Confidence 112 367878774 3343332 34488999999999999999986544311 0000 0 Q ss_pred hhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 474 LAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 474 l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) |..-......++.+.... ..+..|.+.+..+| T Consensus 364 -------------~~n~~~~~~~~~~~~~~~-~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 364 -------------TKNYEKANSGENDEKEKD-ENTLKGGDEDESGD 395 (395) T ss_pred -------------ccccccccccccccCccc-ccccCCCCCCCCCC Confidence 100000001111111111 11222333333333 No 77 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=99.22 E-value=6.9e-11 Score=76.28 Aligned_cols=388 Identities=10% Similarity=0.076 Sum_probs=176.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.== -|+-++-+. .....+- .. +..-..+.|-+..-++-.+.-+++.+|++.+ T Consensus 1 Mg~f-~~lf~~~~~-------------~~~~~~~-~~------------~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~ 53 (395) T protein:vir:10 1 MSIL-EKIFKTRKD-------------ITYMLDL-DM------------IEDLSQQAYVKRLAIDSCIEFVARAVAQSHF 53 (395) T ss_pred Cchh-hhhhccCcc-------------ccccccc-hh------------ccccchhhhhhhHHHHHHHHHHHHhhcccee Confidence 2210 011111000 0000000 00 0000111222455567778889999999987 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..=+ ++. ..++ .+..+...=--.-+-..++++.+..+|-.-|+.++++. +..+.. +. ++. T Consensus 54 ~~~~----~~~---~~~~------~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~-~~~~~~-----~~-~~~ 113 (395) T protein:vir:10 54 KVLE----GNR---IQKN------DVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVS-DSKELL-----IA-DSF 113 (395) T ss_pred Eecc----CCc---cccc------hHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEe-cCCCeE-----ec-CCc Confidence 6532 111 1112 13333332222345566788999999999998876552 222211 11 111 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCc Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnG 240 (629) .++...+... ....+..-.+.........| ||++=..++.-...-.||+.++...+.-.. ++-+.=..-.| T Consensus 114 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e-vih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~g 184 (395) T protein:vir:10 114 YREEYALYDD-IFKDVTVKDYTYQRTFTMQE-VIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRG 184 (395) T ss_pred cceeEeecCc-ceeEEEEcCceeeeeecccc-EEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCce Confidence 1111111100 00011111111111112233 444422333333445677766554432111 11111111225 Q ss_pred eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeC Q lcl|Aclame:pro 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) Q Consensus 241 vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~ 320 (629) +|.+|+... ...+.+.+...+-+-- .+. +.++ ..| +..++ --+++-|.+. T Consensus 185 ii~~~~~~~---------------------~~e~~~~~~~~~~~~~-~~~-~~~~----~~v-~~l~~--g~~~~~l~~~ 234 (395) T protein:vir:10 185 ILKSASSAY---------------------DEKNIEKLQAFTNKLF-NTF-NKNQ----LAI-APLIE--GFDYEELSNG 234 (395) T ss_pred EEEeCCCCC---------------------CHHHHHHHHHHHHHHh-ccc-cccC----cce-EEcCC--Cceeeecccc Confidence 555554321 1224444555443211 111 1111 112 11222 2344455543 Q ss_pred C---chhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 321 N---QVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMRE 396 (629) Q Consensus 321 ~---dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~e 396 (629) . +.++. -+++|+..+..||..|.|||. +|| |+. .++-+....=++..|.|.+..|+++|++.+|.+... T Consensus 235 ~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~-~l~-~~~---sn~e~~~~~~~~~~l~P~~~~ie~~l~~kL~~~~~~-- 307 (395) T protein:vir:10 235 GKNSNMPFSELSELMRDAIKNVALMIGIPPG-LIY-GET---ADLEKNTLVFEKFCLTPLLKKIQNELNAKLITQSMY-- 307 (395) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhCCCHH-Hhc-Ccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhh-- Confidence 2 33333 388999999999999999995 556 333 346777777788899999999999999998765322 Q ss_pred CCChhheEeeecCcccccCCCchHH---HHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhh Q lcl|Aclame:pro 397 GIDPNAYVVWHDASQLTVDPDKTDE---ARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPT 473 (629) Q Consensus 397 G~d~~~yv~w~DaS~L~~~Pd~t~e---A~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~ 473 (629) ..| +.||.+.|. ++|..+. ...++..|++|.+++|.++|++--.+... .+-+ + T Consensus 308 ----~~~-~~f~~~~l~-~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~--d~~~--------------~-- 363 (395) T protein:vir:10 308 ----LKD-TRIEIVGVN-KKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPEL--DEYL--------------I-- 363 (395) T ss_pred ----ccc-ceecchhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC--ceee--------------e-- Confidence 112 367878774 3343332 34488999999999999999986544311 0000 0 Q ss_pred hhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 474 LAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 474 l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) |..-......++.+.... ..+..|.+.+..+| T Consensus 364 -------------~~n~~~~~~~~~~~~~~~-~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 364 -------------TKNYEKANSGENDEKEKD-ENTLKGGDEDESGD 395 (395) T ss_pred -------------ccccccccccccccCccc-ccccCCCCCCCCCC Confidence 100000001111111111 11222333333333 No 78 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=99.20 E-value=1.2e-10 Score=74.95 Aligned_cols=372 Identities=14% Similarity=0.157 Sum_probs=182.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhh---hccCCcccchhHHHHHHHhhcchhhhhhhhhhhceee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRK---AMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASR 77 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk---~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr 77 (629) |. +.++- +.|+. .+....-.+||.+.=. |. ..=+.-.+.-+++.+|. T Consensus 1 Mg-----~f~~~-----------------------~~f~~~~~~~~~~~~~~~~~~~~~-~~-~~~v~~~i~~Ia~~iA~ 50 (378) T protein:vir:93 1 MN-----LFGKV-----------------------VSFSRGKLNNDTQRVTAWQNEAVE-YT-SAFVTNIHNKIANEITK 50 (378) T ss_pred Cc-----cchhh-----------------------hhhhccccCCCcceeeecccchhH-HH-HHHHHHHHHHHHhhhhh Confidence 10 11110 01111 1111112346655321 11 11133336779999999 Q ss_pred eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccch Q lcl|Aclame:pro 78 VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVP 157 (629) Q Consensus 78 ~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~ 157 (629) +.+..=..+.+ |.......+ ....-+..+.+.=----+-..++++.++.+|..-|++||.+..... .+ T Consensus 51 lp~~~~~~~~~-~~~~~~~~~--~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~-----~g---- 118 (378) T protein:vir:93 51 VEFNHVKYKKS-DVGSDTLIS--MAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDN-----TG---- 118 (378) T ss_pred CceeeEEEccc-ccccccccc--cccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecC-----Cc---- Confidence 99854444422 222221111 0011244444432233455678999999999999999987653211 11 Q ss_pred hhheecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhh Q lcl|Aclame:pro 158 EWLALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) Q Consensus 158 eW~~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~ 237 (629) +...-.|.+..-+|. .+-||++-+|. .-...-||+..++..+ .++.++-- T Consensus 119 ---------------~~~~l~~~~~~~~~~--~~diih~r~~~--~~~~~~s~l~~~~~~i----------~~~~~~~~- 168 (378) T protein:vir:93 119 ---------------ELLDLLFADDKKEYK--TEELVRLTSPF--YINEDTSILDNALASI----------QTKLEQGK- 168 (378) T ss_pred ---------------eEEEEEecCCeeEec--cceeEEecCcc--ccchhhHHHHHHHHHH----------HHHHhcCc- Confidence 112222333222221 23366665543 3333455555544433 22222111 Q ss_pred hCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeE Q lcl|Aclame:pro 238 GNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) Q Consensus 238 gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL 317 (629) =+|+|=+|..++ ..+.+.+.+-|.+--+......+ ... ++++ +.-.+++.| T Consensus 169 ~~g~l~~~~~l~----------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~l----~~g~~~~~l 219 (378) T protein:vir:93 169 LRGLLKINAFLD----------------------IDNTQEYREKALTTIKNMQEGSS-YNG--LTPV----DNKTEIVEL 219 (378) T ss_pred ccceeeeCCcCC----------------------HHHHHHHHHHHHHHHHHhhcccc-ccc--ceEc----CCCceEEEc Confidence 135654444332 11233344444433222222211 112 2333 223456666 Q ss_pred EeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 318 KFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREG 397 (629) Q Consensus 318 ~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG 397 (629) .+... +.-+..++...+.||..|.|||..|-| +.+ -+....-++..|.|.+..|+++|++.+|.+.=...| T Consensus 220 ~~~~~--~~~~~~~~~~~~~Ia~~fgVPp~~l~g--~~~-----e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~er~~~ 290 (378) T protein:vir:93 220 KKDYS--VLNKDEIDLIKSELLTGYFMNENILLG--TAT-----QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVV 290 (378) T ss_pred cCChh--hhhHHHHHHHHHHHHHHhCCCHHHhcC--CcH-----HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhh Confidence 66544 344566778889999999999976643 222 244455567889999999999999999976544445 Q ss_pred CChhheE-eeecCcccccC-C-CchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhh Q lcl|Aclame:pro 398 IDPNAYV-VWHDASQLTVD-P-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTL 474 (629) Q Consensus 398 ~d~~~yv-~w~DaS~L~~~-P-d~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l 474 (629) .....|+ +.||.+.|..- + ++.+....+++.|++|.+++|+++|++.-.+-|. ++- T Consensus 291 ~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~-------------------~~~-- 349 (378) T protein:vir:93 291 KGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV-------------------YIA-- 349 (378) T ss_pred hhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe-------------------eee-- Confidence 5444333 57888888643 2 2233335699999999999999999986654431 000 Q ss_pred hhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 475 AVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAG 521 (629) Q Consensus 475 ~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~ 521 (629) | .... |.++. ++......+..|+.|++.- T Consensus 350 -~--~n~~------------~~~~~---~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 350 -N--LNAV------------AVKNL---SDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred -c--cccc------------cccch---hhhcCccCCCCCCCCCCCC Confidence 0 0000 00000 0001111111122221110 No 79 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=99.17 E-value=2.1e-10 Score=73.68 Aligned_cols=414 Identities=12% Similarity=0.112 Sum_probs=189.2 Q ss_pred CCCCcc-eeEEcCCCCCCCcc------------cceeeecccccCcccchhhhh--ccCCcccchhHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MAPTSL-RIVRRPKSEPVSTR------------QRALVAASQPVENPGKAFRKA--MGSSTRTDWQEDAWKAYDAVGELR 65 (629) Q Consensus 1 ma~t~l-r~vr~pk~~~~~~r------------~r~l~aAsa~~~~~~~~~kk~--~~~~~~~~WQ~eAW~~~d~VgELr 65 (629) |---.. --..-+|+.--... .|++. -+-.+.+..++.. +.+.....+-.+. .+ ..+-+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--al-~~~~V~ 74 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQ---YNEDDLQMMVQTLPGFQGTKLRQYKDIE--AI-RHSDIF 74 (441) T ss_pred CccccCccccccccccccchhhhhcccccccccccccc---CCCcchHHHHHHhcccCcccccccchhh--hh-ccHHHH Confidence 110000 00011222211100 12211 0111111111100 0011110010000 00 123333 Q ss_pred hhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcC Q lcl|Aclame:pro 66 YYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTD 145 (629) Q Consensus 66 yyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~ 145 (629) -.|.-++++++++-|..- .+ |. +..+ ..+..+...=.-.-+-..++++.+..++.+-|++|+.+.--. T Consensus 75 ~cv~~Ia~~iA~lp~~~~---~~-~~----~~~~----~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~ 142 (441) T protein:vir:79 75 TAVMMIASDLARMPIRVT---VN-GQ----INYS----DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK 142 (441) T ss_pred HHHHHHHHhhccCceeee---cC-cc----cccc----chHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECC Confidence 457778899998877542 23 22 2221 124445544344556778899999999999999999875323 Q ss_pred CcccccCcccchhhheecHHHhc--cCCCee---EEECCCCCCCcc---cCCCceEEEEeCCCcccccCCccchhhhHHH Q lcl|Aclame:pro 146 KSRLDSNGNPVPEWLALTPEEVR--ASEKKT---IIELPTGDKHEF---RDGLDGMFRVWNPRARRAREPDSPVRANLDS 217 (629) Q Consensus 146 ~~~~d~~~~~~~eW~~vt~~eI~--~~~~~~---~i~lP~g~~h~~---~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~ 217 (629) .|. +. +-+.|.++.|. ..+++. .+...++..+.+ ....| ||++=. ++-....--||+.++.+. T Consensus 143 ~G~------~~-~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d-vih~k~-~~~dg~~G~spl~~~~~~ 213 (441) T protein:vir:79 143 TGE------PM-NLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFED-MLDIKF-YSLDGINGLSLLDTLSRT 213 (441) T ss_pred CCc------EE-EEEEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEcccc-EEEecc-CCCCCccccCHHHHHHHH Confidence 332 11 12223333332 222211 111122211111 12233 333311 122223445676665555 Q ss_pred HHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccc Q lcl|Aclame:pro 218 LKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMA 297 (629) Q Consensus 218 LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~A 297 (629) +.-..-..+...+..+.-..-.|||-+|+.+.= .-+.+.+.+.|. .++.-.+. T Consensus 214 i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~---------------------~e~~e~~r~~~~----~~~~G~~n-- 266 (441) T protein:vir:79 214 IESDNNGKDFLNNFLRNGTHAGGILKMKGVLDN---------------------KKARDRAREEFH----KSFSGTKQ-- 266 (441) T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCC---------------------HHHHHHHHHHHH----HHhcCccc-- Confidence 543333444444444444445577777655431 112333444443 23332111 Q ss_pred cccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHH Q lcl|Aclame:pro 298 ALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPV 377 (629) Q Consensus 298 A~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~ 377 (629) +--|+|+ |+. -+++.|.+..+..+ -+++|+..+..||..|.||| .|||+. +.| ++..+..-. +...|.|.+ T Consensus 267 ag~~~vl--~~G--~~~~~l~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp-~~lg~~-~~~-~s~~q~~~~-~~~tl~P~~ 337 (441) T protein:vir:79 267 AGKVVVL--DES--MTFDQLEVDTEVLK-LIRENKSSTREIAGVFGIPL-HKFGIE-TAN-MSITDANLD-YLSTLKPYI 337 (441) T ss_pred cCcceec--CCC--ceEEEccCChhHHH-HHHHHHHhHHHHHHHhCCCH-HHcCCC-CCC-ccHHHHHHH-HHHHHHHHH Confidence 1122333 222 25666766443323 37899999999999999999 678974 444 344554433 445799999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHH Q lcl|Aclame:pro 378 EMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPE 454 (629) Q Consensus 378 ~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~E 454 (629) ..|+++|++.++... ..|-|.||.+.|.. .|..+.+ ..+++.|++|.+++|+++||+--.+-|....- T Consensus 338 ~~ie~eln~kl~~~~--------~~~~~~fd~~~llr-~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~ 408 (441) T protein:vir:79 338 TCVCAELNFKFNDEY--------VNREFKFDTTEIRV-VDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHR 408 (441) T ss_pred HHHHHHHhhhccccc--------cCceEEeechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEe Confidence 999999998765321 23557999999855 3443333 34788999999999999999865444420000 Q ss_pred HHHHHHHHHHhcCcchhhhhhhhcccccCccC-CCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 455 GWAQWARDRVGQDPNLLPTLAVLIPELADVEF-PTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 455 g~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~-p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) + + ....+++. ++.+. ......+....|-+.+ | T Consensus 409 ----------------~----~--~n~~~~~~~~~~~~----~~~~~~~~~~kgGe~~-e 441 (441) T protein:vir:79 409 ----------------V----D--LNHVNIELVDEYQM----NKSRATDKKLKGGEEN-E 441 (441) T ss_pred ----------------e----c--cccccccccccccc----ccccccccccCCCCCC-C Confidence 0 0 00000110 00000 0000000000000000 0 No 80 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=99.17 E-value=2.1e-10 Score=73.68 Aligned_cols=414 Identities=12% Similarity=0.112 Sum_probs=189.2 Q ss_pred CCCCcc-eeEEcCCCCCCCcc------------cceeeecccccCcccchhhhh--ccCCcccchhHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MAPTSL-RIVRRPKSEPVSTR------------QRALVAASQPVENPGKAFRKA--MGSSTRTDWQEDAWKAYDAVGELR 65 (629) Q Consensus 1 ma~t~l-r~vr~pk~~~~~~r------------~r~l~aAsa~~~~~~~~~kk~--~~~~~~~~WQ~eAW~~~d~VgELr 65 (629) |---.. --..-+|+.--... .|++. -+-.+.+..++.. +.+.....+-.+. .+ ..+-+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--al-~~~~V~ 74 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQ---YNEDDLQMMVQTLPGFQGTKLRQYKDIE--AI-RHSDIF 74 (441) T ss_pred CccccCccccccccccccchhhhhcccccccccccccc---CCCcchHHHHHHhcccCcccccccchhh--hh-ccHHHH Confidence 110000 00011222211100 12211 0111111111100 0011110010000 00 123333 Q ss_pred hhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcC Q lcl|Aclame:pro 66 YYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTD 145 (629) Q Consensus 66 yyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~ 145 (629) -.|.-++++++++-|..- .+ |. +..+ ..+..+...=.-.-+-..++++.+..++.+-|++|+.+.--. T Consensus 75 ~cv~~Ia~~iA~lp~~~~---~~-~~----~~~~----~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~ 142 (441) T protein:vir:94 75 TAVMMIASDLARMPIRVT---VN-GQ----INYS----DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK 142 (441) T ss_pred HHHHHHHHhhccCceeee---cC-cc----cccc----chHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECC Confidence 457778899998877542 23 22 2221 124445544344556778899999999999999999875323 Q ss_pred CcccccCcccchhhheecHHHhc--cCCCee---EEECCCCCCCcc---cCCCceEEEEeCCCcccccCCccchhhhHHH Q lcl|Aclame:pro 146 KSRLDSNGNPVPEWLALTPEEVR--ASEKKT---IIELPTGDKHEF---RDGLDGMFRVWNPRARRAREPDSPVRANLDS 217 (629) Q Consensus 146 ~~~~d~~~~~~~eW~~vt~~eI~--~~~~~~---~i~lP~g~~h~~---~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~ 217 (629) .|. +. +-+.|.++.|. ..+++. .+...++..+.+ ....| ||++=. ++-....--||+.++.+. T Consensus 143 ~G~------~~-~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d-vih~k~-~~~dg~~G~spl~~~~~~ 213 (441) T protein:vir:94 143 TGE------PM-NLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFED-MLDIKF-YSLDGINGLSLLDTLSRT 213 (441) T ss_pred CCc------EE-EEEEEcCceeEEEECCCccEEEEEEEeccCCceeEEEEcccc-EEEecc-CCCCCccccCHHHHHHHH Confidence 332 11 12223333332 222211 111122211111 12233 333311 122223445676665555 Q ss_pred HHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccc Q lcl|Aclame:pro 218 LKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMA 297 (629) Q Consensus 218 LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~A 297 (629) +.-..-..+...+..+.-..-.|||-+|+.+.= .-+.+.+.+.|. .++.-.+. T Consensus 214 i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~---------------------~e~~e~~r~~~~----~~~~G~~n-- 266 (441) T protein:vir:94 214 IESDNNGKDFLNNFLRNGTHAGGILKMKGVLDN---------------------KKARDRAREEFH----KSFSGTKQ-- 266 (441) T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCC---------------------HHHHHHHHHHHH----HHhcCccc-- Confidence 543333444444444444445577777655431 112333444443 23332111 Q ss_pred cccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHH Q lcl|Aclame:pro 298 ALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPV 377 (629) Q Consensus 298 A~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~ 377 (629) +--|+|+ |+. -+++.|.+..+..+ -+++|+..+..||..|.||| .|||+. +.| ++..+..-. +...|.|.+ T Consensus 267 ag~~~vl--~~G--~~~~~l~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp-~~lg~~-~~~-~s~~q~~~~-~~~tl~P~~ 337 (441) T protein:vir:94 267 AGKVVVL--DES--MTFDQLEVDTEVLK-LIRENKSSTREIAGVFGIPL-HKFGIE-TAN-MSITDANLD-YLSTLKPYI 337 (441) T ss_pred cCcceec--CCC--ceEEEccCChhHHH-HHHHHHHhHHHHHHHhCCCH-HHcCCC-CCC-ccHHHHHHH-HHHHHHHHH Confidence 1122333 222 25666766443323 37899999999999999999 678974 444 344554433 445799999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHH Q lcl|Aclame:pro 378 EMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPE 454 (629) Q Consensus 378 ~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~E 454 (629) ..|+++|++.++... ..|-|.||.+.|.. .|..+.+ ..+++.|++|.+++|+++||+--.+-|....- T Consensus 338 ~~ie~eln~kl~~~~--------~~~~~~fd~~~llr-~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~ 408 (441) T protein:vir:94 338 TCVCAELNFKFNDEY--------VNREFKFDTTEIRV-VDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHR 408 (441) T ss_pred HHHHHHHhhhccccc--------cCceEEeechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEe Confidence 999999998765321 23557999999855 3443333 34788999999999999999865444420000 Q ss_pred HHHHHHHHHHhcCcchhhhhhhhcccccCccC-CCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 455 GWAQWARDRVGQDPNLLPTLAVLIPELADVEF-PTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 455 g~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~-p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) + + ....+++. ++.+. ......+....|-+.+ | T Consensus 409 ----------------~----~--~n~~~~~~~~~~~~----~~~~~~~~~~kgGe~~-e 441 (441) T protein:vir:94 409 ----------------V----D--LNHVNIELVDEYQM----NKSRATDKKLKGGEEN-E 441 (441) T ss_pred ----------------e----c--cccccccccccccc----ccccccccccCCCCCC-C Confidence 0 0 00000110 00000 0000000000000000 0 No 81 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=99.17 E-value=1.8e-10 Score=74.06 Aligned_cols=369 Identities=14% Similarity=0.125 Sum_probs=179.1 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhh---hccCCcccchhHHHHHHHhhcchhhhhhhhhhhceee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRK---AMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASR 77 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk---~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr 77 (629) |. +.++. +.|+. .+....-..||.++=.+ . ..=+.-.|.-++++||. T Consensus 1 Mg-----~f~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~i~~Ia~~iA~ 50 (378) T protein:vir:16 1 MN-----LFGKV-----------------------VSFSRGKLNNDTQRVTAWQNEAVEY-T-SAFVTNIHNKIANEITK 50 (378) T ss_pred Cc-----cchhh-----------------------hhhhcccccCCcceeeecccchhhH-H-HHHHHHHHHHHHhhhhh Confidence 10 11110 01111 11111123476654221 1 11133346789999999 Q ss_pred eEEEEEeecCCCCC-CCC--CCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcc Q lcl|Aclame:pro 78 VRLIASAIDPDTGL-PTG--SIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGN 154 (629) Q Consensus 78 ~rL~aseiD~DtG~-ptg--~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~ 154 (629) +.|-.-+...+.+. -+. ..++ .+..+.+.=----+-..++++.++.+|..-|++||.++- +.. T Consensus 51 l~~~~~~~~~~~~~~~~~~~~~~~------~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~-d~~------- 116 (378) T protein:vir:16 51 VEFNHVKYKKSDVGSDTLISMAGS------DLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVF-DDN------- 116 (378) T ss_pred CceeEEEEcccccccccccccccc------hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEe-ecC------- Confidence 99865555433221 111 1122 244444322223456678999999999999999998752 211 Q ss_pred cchhhheecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 155 PVPEWLALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 155 ~~~eW~~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) .++...-.|.+..-+|.. .| ||++=+|. .-..--||...++..+ .++.++ T Consensus 117 ----------------~g~~~~l~~~~~~~~~~~-~d-iih~r~~~--~~~~~~s~l~~~~~~i----------~~~~~~ 166 (378) T protein:vir:16 117 ----------------TGELLDLLFADDKKEYKP-EE-LVRLTSPF--YINEDTSILDNALASI----------QTKLEQ 166 (378) T ss_pred ----------------CceEEEEEecCCeeEecc-cc-eEEecCcc--CccchhHHHHHHHHHH----------HHHHhc Confidence 111222234444444422 23 44432332 2233445555554433 232222 Q ss_pred HhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCc Q lcl|Aclame:pro 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) Q Consensus 235 RL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~i 314 (629) -. -+|+|-+|..++ ....+.+.+-|.+--+....-.+ +.. ++++ ++ --++ T Consensus 167 ~~-~~g~l~~~~~l~----------------------~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~vl--~~--g~~~ 216 (378) T protein:vir:16 167 GK-LRGLLKINAFLD----------------------IDNTQEYREKALTTIKNMQEGSS-YNG--LTPV--DN--KTEI 216 (378) T ss_pred Cc-cceeeEeCCcCC----------------------HHHHHHHHHHHHHHHHHhhcccc-ccc--ceEc--CC--CceE Confidence 11 136665554333 11233444444433222222111 112 2333 22 2245 Q ss_pred eeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 315 khL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) +.|.... .+.-+..++.....||..|.|||..|-| +.+ -+....-++..|.|.+..|+++|++.+|.+.-. T Consensus 217 ~~l~~~~--~~~~~~~~~~~~~~Ia~~fgVPp~~l~g--~~~-----e~~~~~f~~~tl~P~~~~ie~~l~~kLl~~~e~ 287 (378) T protein:vir:16 217 VELKKDY--SVLNKDEIDLIKSELLTGYFMNENILLG--TAS-----QEQQIYFYNSTIIPLLIQLEKELTYKLISTNRR 287 (378) T ss_pred EEccCCh--hhhhHHHHHHHHHHHHHHhCCCHHHhcC--Cch-----HHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhh Confidence 5555544 3444456667789999999999966633 232 244455567889999999999999999976443 Q ss_pred hcCCChhheE-eeecCcccccC-C-CchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchh Q lcl|Aclame:pro 395 REGIDPNAYV-VWHDASQLTVD-P-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) Q Consensus 395 ~eG~d~~~yv-~w~DaS~L~~~-P-d~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li 471 (629) ..|.....|. +.||.+.|..- + ++.+....++..|++|.+++|+++|++.-.+=|. . ++ T Consensus 288 ~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~--~----------------~~ 349 (378) T protein:vir:16 288 RVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV--Y----------------IA 349 (378) T ss_pred hhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe--E----------------ee Confidence 3454444444 56888887644 2 2233335689999999999999999986544321 0 00 Q ss_pred hhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 472 PTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAG 521 (629) Q Consensus 472 ~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~ 521 (629) |. ...+++ +. ++..+...+..|+.|++-- T Consensus 350 ~~------n~~~~~------------~~---~~~~~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 350 NL------NAVAVK------------NL---SDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred cc------cccccc------------ch---hhhcCccCCCCCCCCCCCC Confidence 00 000000 00 0000000000111111110 No 82 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=99.17 E-value=3.7e-11 Score=77.80 Aligned_cols=369 Identities=13% Similarity=0.080 Sum_probs=198.1 Q ss_pred ceeEE-cCCCCCCCc-ccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEEE Q lcl|Aclame:pro 6 LRIVR-RPKSEPVST-RQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIAS 83 (629) Q Consensus 6 lr~vr-~pk~~~~~~-r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~as 83 (629) ..+.. +++..+.++ ...++. .+. ...|...++++..- ....|++ .+=+.=.+.=+++.+|.+.+... T Consensus 1 Mglf~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~v-~~~~al~----~~~V~~~i~~Ia~~ia~l~~~~~ 69 (384) T protein:vir:49 1 MPIFNITNLATESPPSNQDSFF----DIT--DPEFLDALNGSEWV-SAETALK----NSDLFSIISQLSNDLATAKITTS 69 (384) T ss_pred CccccccccCcccccccchhhc----ccc--chhhcccccCCcee-chhhhhc----cHHHHHHHHHHHHHHhhCceeee Confidence 33332 233222211 111111 111 12222222222111 1222332 33355567778999999988876 Q ss_pred eecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheec Q lcl|Aclame:pro 84 AIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALT 163 (629) Q Consensus 84 eiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt 163 (629) +-+.+ .-.+.||+. . -..++++.+..++-+-|++|+.+.--..|+ ..+++.|. T Consensus 70 ~~~~~-----~l~~~PN~~--------------~-t~~~f~~~l~~~lll~Gna~~~i~r~~~g~-------~~~L~~l~ 122 (384) T protein:vir:49 70 RKQLQ-----GIVDNPSNN--------------A-NRFNFYQSIFAQMLLGGEAFAYRWRNENGR-------DMKWEYLR 122 (384) T ss_pred cchhh-----hhhhccCCC--------------C-CHHHHHHHHHHHhhhcCCeEEEEEECCCCc-------EEEEEEEc Confidence 43322 112223322 2 335799999999999999999876333332 12234444 Q ss_pred HHHhcc----CCCeeE--EECCCC--CCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhH Q lcl|Aclame:pro 164 PEEVRA----SEKKTI--IELPTG--DKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSR 235 (629) Q Consensus 164 ~~eI~~----~~~~~~--i~lP~g--~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SR 235 (629) .+.|.. .++.+. +...++ ..-...+..|++ ++=.+.+.-...--||+.++.+.+.-.....+...+..+.- T Consensus 123 ~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~eVi-h~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng 201 (384) T protein:vir:49 123 PSQVSFNRLDNQNGLYYNITFDDPRIPPKQHVPQGDIL-HFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNA 201 (384) T ss_pred CceeEEEEcCCCceEEEEEEecCccccceeEecCccEE-EecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 443331 122222 333221 122222334544 33334444445667999999998888888888888888877 Q ss_pred hhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCce Q lcl|Aclame:pro 236 LIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVT 315 (629) Q Consensus 236 L~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ik 315 (629) ..-.|||-+|+.++-.. ..++..+.. ...+..+ . |+++ ++ +.+ T Consensus 202 ~~~~~il~~~~~~~~~~---------------------~~~~~~~~~-----~~~~n~~---~--~~vl--~~----g~~ 244 (384) T protein:vir:49 202 LNANGILKIKGGGLLDF---------------------KTKQSRSRQ-----AMKQMQG---G--PLVL--DD----LED 244 (384) T ss_pred CCCceEEEeCCCCChHH---------------------HHHHHHHHH-----hcccCCc---c--ceec--CC----Cce Confidence 77888888876655211 112222211 1112222 2 3333 22 234 Q ss_pred eEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 HLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) Q Consensus 316 hL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le 394 (629) ...++....+.. +++|+..+..||..|.||| .+||. ...|+.+.-.+ ++..+..|.|.++-|++.|.+.+.++..- T Consensus 245 ~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~-~~lg~-~~~~~~~~~~~-~~~~~~~i~~~l~pi~~~i~~~l~~~l~~ 321 (384) T protein:vir:49 245 FTPLEIKSNVAQLLSQADWTTGQFAKVYGIPE-SVVGG-EGDKQSSLEMI-YNIYFKAVSRFLRPFVSELSKKLSCEVDA 321 (384) T ss_pred EEEccCChhhHHHHHHHHHHHHHHHHHhCCCH-HHhCC-CCCccccHHHH-HHHHHHHHHHHHHHHHHHHHHHhchhhhh Confidence 444443444444 7899999999999999999 56675 35555555444 34455567777777777777777666422 Q ss_pred hc--CCChhheEeeecCcccccC-CCchHHHHH-HHHcCCCCHHHHHHHhCCCcccccCCCCHHHH Q lcl|Aclame:pro 395 RE--GIDPNAYVVWHDASQLTVD-PDKTDEARD-AFDRGAITAEAMVKMLGLADDTVYDFTTPEGW 456 (629) Q Consensus 395 ~e--G~d~~~yv~w~DaS~L~~~-Pd~t~eA~~-~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~ 456 (629) +. -++++.|-++||...|..- .-.-.|+.+ +.+.|.++ .++|++.|++--.|= .+-|.| T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~~gG--d~~~~~ 384 (384) T protein:vir:49 322 DILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-KDLPEGETDSTLKGG--ETNEQY 384 (384) T ss_pred hhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-hhHHHHcCCCCCCCC--CCCCCC Confidence 11 2245566778888877543 233345544 45567776 889999998543333 233433 No 83 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=99.16 E-value=1.6e-10 Score=74.23 Aligned_cols=373 Identities=11% Similarity=0.031 Sum_probs=178.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |+== -++..| +.+ .+-..+.. .|. ..+.+ .|-...-+.-.+.-+++.||++.+ T Consensus 1 Mg~f-~~~f~~-~~~------------~~~~~~~~-~~~---~~~~~---------~a~~~~~v~~~i~~ia~~ia~~p~ 53 (385) T protein:vir:95 1 MGLF-DSVFKR-HSE------------LSWMYDLE-FLQ---DKSKK---------AYLKQIALNTVVEMVARTISQSEF 53 (385) T ss_pred Cchh-hhhhcc-Ccc------------cccccchh-hhh---ccchh---------hhhhhHHHHHHHHHHHHHHcccce Confidence 4320 011111 000 00000100 010 01111 111233455668889999999988 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+- |. ...++ +..+...=--.-+-..++++.++.++-+-|++||++ .+..+. ....|. T Consensus 54 ~~~~~----~~---~~~~~------l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~-~~~~~~------~~~~~~ 113 (385) T protein:vir:95 54 RVMKN----NT---KEKGT------LYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVK-NDEGHF------FVADDF 113 (385) T ss_pred eeeec----Cc---cccch------HHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEE-ecCCCe------eecccc Confidence 77542 21 12222 334443212234455789999999999999999865 333221 111222 Q ss_pred eec-HHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhC Q lcl|Aclame:pro 161 ALT-PEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGN 239 (629) Q Consensus 161 ~vt-~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gn 239 (629) ... ...+... ....+....+......+. +-||++=.+.+.-...-.||+..+...+.-. +. ..--+| T Consensus 114 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~------~~----~~~~~~ 181 (385) T protein:vir:95 114 EKEDELGLYSH-RFTNVLVNDFEFKRVFTM-DDVIYLKYNNQKLDAFSLGLFEDYGEIFGRM------ID----LQMLNN 181 (385) T ss_pred ccccccccccc-cceeeeecccceeeeecc-ccEEEecCCCCCcccccchHHHHHHHHHHHH------HH----HHHhcC Confidence 221 1111111 111112222111111122 3355554455544455677776665443221 11 111222 Q ss_pred ---ceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCcee Q lcl|Aclame:pro 240 ---GVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTH 316 (629) Q Consensus 240 ---GvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikh 316 (629) |+|-+|....+ .....+.+++.+-+--.....+ --+|++ ++ .-.+++- T Consensus 182 ~~~g~l~~~~~~~~--------------------~~e~~~~~~~~~~~~~~g~~~~------~~~i~~-l~--~g~~~~~ 232 (385) T protein:vir:95 182 QIRGILKVDATKFY--------------------NKEKQKELQAYIDTLFDAFQNN------TIAVVP-LT--EGLAYEE 232 (385) T ss_pred CCceEEEeCCccCC--------------------CHHHHHHHHHHHHHHhhhhhhc------CCceEE-cC--CCceeEe Confidence 33333322111 1223344555544322222111 112221 12 2224455 Q ss_pred EEeCC-----chhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 317 LKFDN-----QVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 317 L~f~~-----dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) |+... .-+.--+++|+.....||..|.|||..| | +|..++.+....-++..|.|.+..|+++|++.+|.+ T Consensus 233 l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l-~----~~~sn~e~~~~~~~~~~l~P~~~~ie~~l~~~L~~~ 307 (385) T protein:vir:95 233 HSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLV-L----GEMADLEKTIESYLQFCINPLLRKIEAELNSKFFYQ 307 (385) T ss_pred ecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHh-c----CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh Confidence 54422 2233457899999999999999999665 3 345667888888899999999999999999998876 Q ss_pred HHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 392 VLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDP 468 (629) Q Consensus 392 ~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P 468 (629) .- . ..|-|.||.+.|. ++|..+.+ ..+++.|++|.+++|.++|++.-+.. .|-.- T Consensus 308 ~~----~--~~~~~~fd~~~l~-~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~-----~gd~~---------- 365 (385) T protein:vir:95 308 DE----Y--LNDDMHIKVVGID-KRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDP-----ELDKF---------- 365 (385) T ss_pred hh----c--ccceEEEechhhh-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC-----CCcee---------- Confidence 22 1 1334678998873 33443333 34888999999999999999743111 00000 Q ss_pred chhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 469 NLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 469 ~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) +++ ... .+.++..+. +...| T Consensus 366 -~~~------~n~------------~~~~~~kgg------e~~~e 385 (385) T protein:vir:95 366 -IIT------KNL------------QSADAFKGG------ESNEE 385 (385) T ss_pred -eec------ccc------------eecccccCC------CCCCC Confidence 000 000 011111100 00111 No 84 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=99.16 E-value=7e-11 Score=76.26 Aligned_cols=360 Identities=12% Similarity=0.111 Sum_probs=179.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHh--------hcchhhhhhhhhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYD--------AVGELRYYVGWRS 72 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d--------~VgELryyvgWr~ 72 (629) |.==+ |+.+| +. ..+|. ..|+++. ...-+.-.+.-++ T Consensus 1 Mg~f~-~l~~~----------~~-----------------------~~~~~-~~~~~~~~~~~~~~l~~~~v~~~i~~Ia 45 (376) T protein:vir:78 1 MGFFS-ELFKR----------NK-----------------------EIEWM-WDLDFLEDKTTKVYLKKMALNTCVKHIA 45 (376) T ss_pred Cchhh-hhhcc----------CC-----------------------ccccc-cchhhccccchhhhhhhHHHHHHHHHHH Confidence 33211 22221 00 00110 0111111 2233445577889 Q ss_pred hceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccC Q lcl|Aclame:pro 73 SSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSN 152 (629) Q Consensus 73 ~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~ 152 (629) ++|+++.+..-+ .+ ..+++ .+..+...=.-.-+-..++++.+..+|..-|++||++.-..++.. T Consensus 46 ~~ia~~p~~~~~----~~---~~~~~------~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~--- 109 (376) T protein:vir:78 46 RTIAKSDFRLKN----GE---TSVRD------KLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLI--- 109 (376) T ss_pred Hhhcccceeecc----cc---ccccc------hHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeee--- Confidence 999999987642 11 11222 244444433334456678999999999999999988753333321 Q ss_pred cccchhhheecHHHhccCCCeeEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 153 GNPVPEWLALTPEEVRASEKKTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 153 ~~~~~eW~~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) ..-|..-.. .+... ....+.+..+.........|++ || + -.+|....+.++.+... ..+.++ T Consensus 110 ---~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~evih~~-~---------~~~~~~~~~~~~~~~~~--~~~~~~ 172 (376) T protein:vir:78 110 ---ADSYVRKEF-AFFPD-VFEGVTVKDYRYNRNFSMDDVIFLE-Y---------GNERLSAFTDGMFEDYG--ELFGKM 172 (376) T ss_pred ---ccceeeccc-ceeee-eeeeeeeecceeeeeeccccEEEec-c---------CCCCchhhhhHHHHHHH--HHHHHH Confidence 111222111 11000 0011222221111111223443 33 2 23456666666655443 335555 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHh Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i 311 (629) .++...+||+-. ..-+... ......+.+.+.+++.+.-.-. .++.-+++| +++ - T Consensus 173 ~~~~~~~~~~~~---~~~~~~~--------------~~~~~e~~~~~~~~~~~~~~g~---~~~~~~v~~----l~~--g 226 (376) T protein:vir:78 173 IRAQMRNFQIRG---AVNFKMA--------------GVADKDKQTKLQEYIDKVYASF---NNNEIAIVP----QLE--G 226 (376) T ss_pred HHHHHhcCCCce---eEEEccC--------------CCCCHHHHHHHHHHHHHHhccc---cccCcceEE----cCC--C Confidence 555566665411 1111000 0111234555666665332211 111212222 222 2 Q ss_pred cCceeEEeCC---chhHH-HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 312 KNVTHLKFDN---QVTEV-AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQ 387 (629) Q Consensus 312 ~~ikhL~f~~---dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~ 387 (629) .+++-|.+.. +.++. -+++|+..+..||..|.|||+ ||| |+.+ +.-+....-++..|.|.+..|+++|++. T Consensus 227 ~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~-~l~-~~~s---~~e~~~~~f~~~~l~P~~~~ie~~l~~k 301 (376) T protein:vir:78 227 FNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSS-LLH-GDMA---DLSNNMKAYMEYCIDPLTKKLEDELNAK 301 (376) T ss_pred ceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHH-HhC-CCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 3455555433 22332 478999999999999999995 556 3333 4556667778889999999999999998 Q ss_pred HHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 VLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRV 464 (629) Q Consensus 388 ~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v 464 (629) +|.+ .+|.+=||...|. +.|..+.+ ..+++.|++|.+++|+++|++.-.+.+. .+ T Consensus 302 ll~~---------~~~~~~~~~~~ll-~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~--d~---------- 359 (376) T protein:vir:78 302 LFTF---------SEFLAGEHIKIIH-KKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPEL--DK---------- 359 (376) T ss_pred hCCc---------ccceecccchhhc-ccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC--ce---------- Confidence 8654 4455555655543 33433333 4488999999999999999986433311 00 Q ss_pred hcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCC Q lcl|Aclame:pro 465 GQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASG 507 (629) Q Consensus 465 ~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~ 507 (629) .+ .+--..|.++- +++| T Consensus 360 --------------------~~--~~~n~~~~~~~----~e~g 376 (376) T protein:vir:78 360 --------------------YL--ITKNYQSADEG----GEDG 376 (376) T ss_pred --------------------ee--eccCceehhcc----ccCC Confidence 01 00011112111 1111 No 85 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=99.14 E-value=2.1e-10 Score=73.61 Aligned_cols=414 Identities=12% Similarity=0.100 Sum_probs=186.9 Q ss_pred CCCCcc-eeEEcCCCCCCCc------------ccceeeecccccCcccchhhhh--ccCCcccchhHHHHHHHhhcchhh Q lcl|Aclame:pro 1 MAPTSL-RIVRRPKSEPVST------------RQRALVAASQPVENPGKAFRKA--MGSSTRTDWQEDAWKAYDAVGELR 65 (629) Q Consensus 1 ma~t~l-r~vr~pk~~~~~~------------r~r~l~aAsa~~~~~~~~~kk~--~~~~~~~~WQ~eAW~~~d~VgELr 65 (629) |---.. --..-+|+.--.. -.|++.. +-...+..++.. +.+.....+-.+ ..+ .++-+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~al-~~~~V~ 74 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQY---NEDDLQMMVQTLPGFQGTKLRQYKDI--EAI-RHSDIF 74 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccC---CCcchHHHHHHhhcccccCccccchh--hhh-ccHHHH Confidence 100000 0001111111100 0111110 111111111100 001101001000 001 122333 Q ss_pred hhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcC Q lcl|Aclame:pro 66 YYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTD 145 (629) Q Consensus 66 yyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~ 145 (629) -.|.-+++++|.+.|..-+ + |. ...+ ..+..+...=.-.-+-..++++.+..++.+-|++|+.|.--. T Consensus 75 acv~~Ia~~iA~lpl~~~~---~-~~----~~~~----~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~ 142 (441) T protein:vir:98 75 TAVMMIASDLARMPIRVTV---N-GQ----INYS----DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDK 142 (441) T ss_pred HHHHHHHHhhccCceEEec---C-Cc----cccc----chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcC Confidence 4577789999998876632 3 22 2221 124445544344556777899999999999999999875323 Q ss_pred CcccccCcccchhhheecHHHhc--cCCCe-eE--EECCCCCCC--cc-cCCCceEEEEeCCCcccccCCccchhhhHHH Q lcl|Aclame:pro 146 KSRLDSNGNPVPEWLALTPEEVR--ASEKK-TI--IELPTGDKH--EF-RDGLDGMFRVWNPRARRAREPDSPVRANLDS 217 (629) Q Consensus 146 ~~~~d~~~~~~~eW~~vt~~eI~--~~~~~-~~--i~lP~g~~h--~~-~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~ 217 (629) .|. +. +.+.+..+.|. ...++ .. +...++... .. ....| ||++=. ++-....--||+..+.+. T Consensus 143 ~G~------~~-~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d-viHir~-~~~dg~~G~spi~~~~~~ 213 (441) T protein:vir:98 143 TGE------PM-NLTFRKTSEIELKLDARGRLYYFHQRIDSNGNNIERNVKFED-MLDIKF-YSLDGINGLSLLDTLSRT 213 (441) T ss_pred CCc------EE-EEEEEcCceeEEEECCCCcEEEEEEEeccCcceeeEEEcccc-EEEecc-CCCCCccccCHHHHHHHH Confidence 332 11 12223233221 22211 11 111111111 11 12223 343311 122223445776666655 Q ss_pred HHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccc Q lcl|Aclame:pro 218 LKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMA 297 (629) Q Consensus 218 LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~A 297 (629) +.--.-..+...+..+.-..-.|||-+|+.++= .-+.+.+.+-|. .++.-.+. T Consensus 214 i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~---------------------~e~~~~~~~~~~----~~~~G~~n-- 266 (441) T protein:vir:98 214 IESDNNGKDFLNNFLRNGTHAGGILKMKGVLDN---------------------KKARDRAREEFH----KSFSGTKQ-- 266 (441) T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCC---------------------HHHHHHHHHHHH----HHhcCccc-- Confidence 544444444444444444445577777665431 112233333333 23322111 Q ss_pred cccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHH Q lcl|Aclame:pro 298 ALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPV 377 (629) Q Consensus 298 A~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~ 377 (629) |-=|+|+ ++. -+++.|.+..+..+ -+++|+..+..||..|.||| .+||+. +.| ++..+..- .+...|.|.+ T Consensus 267 ag~~~vl--~~g--~~~~~l~~~~~d~q-~~e~r~~~~~~Ia~~fgVPp-~~lg~~-~~~-~s~~q~~~-~y~~tl~P~~ 337 (441) T protein:vir:98 267 AGKVVVL--DES--MTFDQLEVDTEVLK-LIRENKSSTREIAGVFGIPL-HKFGIE-TAN-MSITDANL-DYLSTLKPYI 337 (441) T ss_pred cCcceec--CCC--ceEEEccCChhHHH-HHHHHHHhHHHHHHHhCCCH-HHcCCC-CCC-ccHHHHHH-HHHHHHHHHH Confidence 1123333 222 25666666443333 37999999999999999999 667874 433 23334333 3445799999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHH Q lcl|Aclame:pro 378 EMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPE 454 (629) Q Consensus 378 ~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~E 454 (629) ..|+++|++.++.. . ..|-|.||++.|.. .|..+.+ ..+++.|++|.+++|+++||+.-.+-|.... T Consensus 338 ~~ie~~ln~~L~~~---~-----~~~~~~fd~~~llr-~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~- 407 (441) T protein:vir:98 338 TCVCAELNFKFNDE---Y-----VNREFKFDTTEIRV-VDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIH- 407 (441) T ss_pred HHHHHHHHhhcccc---c-----cCceEEEechhhhc-cCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceE- Confidence 99999999876532 1 23557999999855 3544443 4488999999999999999985444431000 Q ss_pred HHHHHHHHHHhcCcchhhhhhhhcccccCccC-CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCC Q lcl|Aclame:pro 455 GWAQWARDRVGQDPNLLPTLAVLIPELADVEF-PTPTVALPPAEEQDGDEEASGASRREEPDTEDD 519 (629) Q Consensus 455 g~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~-p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d 519 (629) +.+ ....+++. ++.+ +......+.... |.| +++ T Consensus 408 -------------------~~~--~n~~~~~~~~~~q----~~~~~~~~~~~k----gGe---~ne 441 (441) T protein:vir:98 408 -------------------RVD--LNHVNIELVDEYQ----MNKSRATDKKLK----GGE---ENE 441 (441) T ss_pred -------------------eec--ccccccccccccc----cccccccccccC----CCC---CCC Confidence 000 00011111 0000 000000000000 000 000 No 86 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=99.13 E-value=1.2e-10 Score=74.88 Aligned_cols=384 Identities=13% Similarity=0.086 Sum_probs=193.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.-.-+...++.+..+. .....+......++. +.-...+..+. .- -....-..+-+.=.|.-+++.+|++.+ T Consensus 1 m~m~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~g~-~v--~~~~al~~~~v~~~v~~ia~~ia~lp~ 72 (392) T protein:vir:74 1 MILPILNFINQTNDPPE---AGSVQSYFPDGNDAQ--IMESLLGDNNE-WV--SARAALRNSDLFSIILQLSSDLAIVKI 72 (392) T ss_pred CcchhhhhhhcccCccc---ccccccccccCchhh--hhhhccCCCCc-cc--chhhhhcchHHHHHHHHHHHhhccCce Confidence 54444555555433221 111111111122111 11111111110 00 001111345555677788899988777 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+-+.+ +-.+.||+ -+...++++.+..++.+-|++|+.++--..|. . .+.+ T Consensus 73 ~~~~~~~~-----~l~~~PN~---------------~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~------~-~~L~ 125 (392) T protein:vir:74 73 NAEKKKNQ-----GIIDNPST---------------NANKHGFWQSMFAQLLLGGEAFAYRWRNANGA------D-MKWE 125 (392) T ss_pred eeccchhh-----hhhhhcCC---------------CCCHHHHHHHHHHHhhhcCCEEEEEEECCCCc------E-EEEE Confidence 55332211 11112222 24567899999999999999999886322332 1 1244 Q ss_pred eecHHHhc--c--CCCeeEEEC--CCCC--CCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 161 ALTPEEVR--A--SEKKTIIEL--PTGD--KHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 161 ~vt~~eI~--~--~~~~~~i~l--P~g~--~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) .|-.+.|. . .++....+. ..+. +....+..| ||++=.+.+.-...--||+.++.+.+.-...+.+...+.- T Consensus 126 ~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~e-vih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f 204 (392) T protein:vir:74 126 YLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSD-LIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSL 204 (392) T ss_pred EEcCceeEEEEcCCCceEEEEEEecCCccceeEEEcCcc-EEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 44444332 1 223222222 2211 111122344 4443333333334567999999988877777777777777 Q ss_pred HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhc Q lcl|Aclame:pro 233 KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIK 312 (629) Q Consensus 233 ~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~ 312 (629) +.-..-.|||-+|+....+. ...+++.+-+. ++.-+-=|+|+ ++. - T Consensus 205 ~ng~~p~~il~~~~~~~~~~--------------------~~~~~~~~~~~----------~~~n~g~~~vl--~~g--~ 250 (392) T protein:vir:74 205 NSSLNVPGVLTVKGGGLLSD--------------------KDKASRSRSFM----------KRSRSGGPVVL--DDL--E 250 (392) T ss_pred hccCCCceEEEeCCCCCchH--------------------HHHHHHHHHHh----------ccccCCCeeec--CCC--c Confidence 77777788988887644211 11122222111 11122334444 222 3 Q ss_pred CceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 NVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTV 392 (629) Q Consensus 313 ~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~ 392 (629) +++.|.+..+..+ -+++|+..+..||..|.||| .+||.. ..|..+. +-...-++..|.|.++.|+++|++.++... T Consensus 251 ~~~~l~~~~~d~q-~~e~~~~~~~~Ia~~fgVPp-~~lg~~-~~~~~~~-e~~~~~~~~~l~p~~~~ie~~l~~~l~~~~ 326 (392) T protein:vir:74 251 EFTALEIKSNVAQ-LLSQTDWTSKQYAKVYGLPD-SYIGGQ-GDQQSSI-QQISGMYASALNRYLRPAISELEYKLSDHI 326 (392) T ss_pred eEEEccCChhHHH-HHHHHHHHHHHHHHHhCCCH-HHhCCC-CCcccHH-HHHHHHHHHHHHHHHHHHHHHHHHhccchh Confidence 5666665433323 38999999999999999999 667764 3333322 334456788899999999999999876541 Q ss_pred HHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhh Q lcl|Aclame:pro 393 LMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP 472 (629) Q Consensus 393 Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~ 472 (629) ++|... +++.+.+ .+.+....++..|++|.++.|++++ ..|+ .+.| .| T Consensus 327 ----~~~~~~---~~~~d~~----~~~~~~~~l~~~g~~t~near~~~~---~~g~--~pne-~r--------------- 374 (392) T protein:vir:74 327 ----SVNMRP---AIDPLGD----NYLSTISTATRWGALAENQATFVLQ---EAGY--IPKD-LP--------------- 374 (392) T ss_pred ----cccchh---hhcCCHH----HHHHHHHHHHhCCCcCHHHHHHHHH---hCCC--Cccc-cc--------------- Confidence 222111 1222111 1233446688999999999999873 1222 1111 11 Q ss_pred hhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 473 TLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEP 514 (629) Q Consensus 473 ~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~eP 514 (629) .... .+|..+-+++ +.-| T Consensus 375 ---------------~~en-l~~~~~Gd~~--------~p~p 392 (392) T protein:vir:74 375 ---------------APEN-TNKKTTGQSN--------EPVP 392 (392) T ss_pred ---------------hhcC-CCCCCCCCCC--------CCCC Confidence 0000 0111100000 0001 No 87 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=99.11 E-value=3.1e-10 Score=72.68 Aligned_cols=510 Identities=14% Similarity=0.073 Sum_probs=204.6 Q ss_pred CCCCcceeEEcCCC--CCCCcccceeeecccccCcccchhhhhccC----CcccchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPTSLRIVRRPKS--EPVSTRQRALVAASQPVENPGKAFRKAMGS----STRTDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t~lr~vr~pk~--~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~----~~~~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) +|-.-.+++-+++- ......++. +|-..+..+-..+....+. -....|-...+.-++++|=. |+-=+.+. T Consensus 75 iag~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna--~ieiIrn~ 150 (651) T protein:vir:99 75 EVGFGFDLVPAQGVDGDDASDAQRE--VARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWL--ALEMLTDI 150 (651) T ss_pred hhccCceeeecccCCCCccchHHHH--HHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhH--hhhhhhcC Confidence 44444444433221 111111010 0001110000000000000 01112444444444333211 11112222 Q ss_pred eee-eEEEEEeecCCCCCCCC---CCCCCcchhHHHHHHHHHhcCC---hhh---HHHHHHHHhcceeecCceE--EEEE Q lcl|Aclame:pro 75 ASR-VRLIASAIDPDTGLPTG---SIDEDDRVGARVQQIVNQIAGG---ALG---QAQLIKRVVEQLTVAGETW--VAIL 142 (629) Q Consensus 75 ~Sr-~rL~aseiD~DtG~ptg---~~~~~~~~~~r~~~iv~~iaGG---~lG---QaqLlkr~~~~LtVpGE~w--I~il 142 (629) .++ ++|| .+++.+.+=.. .+.++ ...+...---+ ... -.|++......+-+-|..+ +..+ T Consensus 151 ~g~pv~L~--~lp~~~~Rv~~~~~~~~~~------~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~ 222 (651) T protein:vir:99 151 EGRPVGLA--YVPARTVRVRRPQNRFDQP------RHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVV 222 (651) T ss_pred ccchhhhh--hcChhheeeecccccccch------hhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeee Confidence 222 1221 13333221110 01110 00000000000 000 1122211112222333322 1111 Q ss_pred EcCCcccccCcc-cchhhheecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHH Q lcl|Aclame:pro 143 FTDKSRLDSNGN-PVPEWLALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEI 221 (629) Q Consensus 143 ~r~~~~~d~~~~-~~~eW~~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI 221 (629) ..-.+.. .... ....|......-+....+ .+...++...+.....| ||++=++.+..-..--||+..++..+.=- T Consensus 223 ~~~~~~~-v~~~~~~d~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~e-ViHir~~~~~~g~~G~spl~~a~~~i~~a 298 (651) T protein:vir:99 223 IDESGDE-PTIRYREDEESEREPIFVDRETG--DVTTGDANGLENRPANE-LIFIPNPSILEDDYGVPDWVSAIRTISAD 298 (651) T ss_pred eccCCcc-eeEEeccCcceeeeeecccceee--eEEEcCCCceeEecccc-eEEecCCCCCCCcccccHHHHHHHHHHHH Confidence 1110000 0000 000011110000000000 01112222222222333 45543455555556678888888877665 Q ss_pred HhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccc Q lcl|Aclame:pro 222 VRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIP 301 (629) Q Consensus 222 ~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vP 301 (629) .-..+...+..+.-..-.|||.+|... ......+.|.+.|-+. +. .+.=+ T Consensus 299 ~~a~~~~~~~f~NG~~p~gil~~~~~~---------------------ls~e~~~~lr~~~~~~----~~-----nagk~ 348 (651) T protein:vir:99 299 EAAKDYNRDFFDNDTIPRMVIKVTGGE---------------------LSEESKRDLRQMLNGL----RE-----ESHRA 348 (651) T ss_pred HHHHHHHHHHHhccCCCceEEEecCCC---------------------CCHHHHHHHHHHHHHH----hc-----cCCce Confidence 656666666556656667787776431 1133456677777642 22 23445 Q ss_pred eeeeechHHh-------cCceeEEeCCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhh Q lcl|Aclame:pro 302 MFAAAPGELI-------KNVTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHIL 374 (629) Q Consensus 302 Iva~vP~E~i-------~~ikhL~f~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~ 374 (629) +|+..++..- -+++.|.+..--+.--+++|+..+..||..|.||| .+||+..++|+.++-+....-++..|. T Consensus 349 ~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~afgVPp-~~lG~~~~~~~sn~E~~~~~f~~~tL~ 427 (651) T protein:vir:99 349 VVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKVLEVPP-VKIGVTDSANRSNSDQQDKDFALEVIQ 427 (651) T ss_pred EEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHHhCCCH-HHhccCCCCCcccHHHHHHHHHHHHHH Confidence 6666654322 13344443322233348999999999999999999 888998899999999999999999999 Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccc-cCCCchHHHHH-HHHcCCCCHHHHHHHhCCCcccccCCCC Q lcl|Aclame:pro 375 PPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLT-VDPDKTDEARD-AFDRGAITAEAMVKMLGLADDTVYDFTT 452 (629) Q Consensus 375 P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~-~~Pd~t~eA~~-~~~~G~it~ealr~~~Gl~ed~~yd~tt 452 (629) |.+..|+++|++.+|.+.. ++...+|-|=||.+.|. .|.....+++. ++..|++|.+++|+++||+.-... T Consensus 428 P~~~~ie~eln~kLl~~~e---~~~~~~i~~ef~~~~llr~D~~~~~e~~~~~i~~G~~T~NE~R~~lglppi~~~---- 500 (651) T protein:vir:99 428 PEQHTFAEWLYQIIHQQAL---GVTDWTIEYELRGADQPKQEAQLAEQRVRAMRLAGVGLVDEAREELGLDPLGEP---- 500 (651) T ss_pred HHHHHHHHHHHHhhcCccc---cccCceEEEEeccchhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc---- Confidence 9999999999999998844 44334555667777765 44433344443 888899999999999999643110 Q ss_pred HHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcc------- Q lcl|Aclame:pro 453 PEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDS------- 525 (629) Q Consensus 453 ~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~------- 525 (629) | . +-.|. ++--..+ . . ....++. .+++...++....+.|.+.-.+.- T Consensus 501 ---~---g------d~~l~----~~~~~~~----g--~-~~~gge~---~~~~~~~~~~~~~~~e~~~~~~~~~~~e~~~ 554 (651) T protein:vir:99 501 ---Y---G------EMTLS----EFEAEVA----G--D-VAGGGET---EAVHEPPEENKIGEREWDTVKSELTTKDPIE 554 (651) T ss_pred ---c---c------ccccc----ccccccc----c--c-cccCCCC---cccccCccccccccchhhhhhhhhcccchhh Confidence 0 0 00011 1000000 0 0 0000000 000000000000111111000000 Q ss_pred ----------------cCCCCCchh-----HH------HHHHHHHHHHHHhhcccCC--hhhHHHhcccchHhhhhhcC- Q lcl|Aclame:pro 526 ----------------DQASLDSRE-----TA------MVEALVFRALELAGKRSRT--RSLPYELRQLSDRELVRRLE- 575 (629) Q Consensus 526 ----------------~~a~~~a~~-----~a------~V~~lv~RALelAGkR~r~--r~~~ar~r~ip~h~~hr~~~- 575 (629) .+..+.-.+ .. -|-.-++++|-.|.-..+= +.=|.+++--.-.+.|-.|+ T Consensus 555 ~~~v~ss~~~~~gyd~~~~~l~~~f~~~~~~~~~y~y~~v~~~~~~~~~~a~s~g~~~~~~i~~~~~~~~~~~~~~~~~~ 634 (651) T protein:vir:99 555 QMQFSSSNLDEGLYDFGENELYLSFLRDEGQSSLYAYVDVPASEWSALANAGSHGGYHYDNIRLEYPYLEITNFHDRLPE 634 (651) T ss_pred hhhHHHHHHHhhcCCCccceEEEEEeecCCCCceeeeeCCCHHHHHHHhcCcccceeehhccccccchhhhhhhhhhCCC Confidence 000000000 00 1223445555555443310 10001111111112233332 Q ss_pred -CCCh-hHHHHHHhhhhhhhhHHH Q lcl|Aclame:pro 576 -PVRR-EHVADLIRGWDSMLEERA 597 (629) Q Consensus 576 -pv~~-~~v~rLi~Gwd~~ld~~~ 597 (629) |.|+ -||+ ..++++| T Consensus 635 ~~~~~~~~~~-------~~~~~~~ 651 (651) T protein:vir:99 635 GPAPDAGDVP-------DGVPDEI 651 (651) T ss_pred CCCCCcCCCC-------CCCcccC Confidence 2222 2222 2344455 No 88 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=99.10 E-value=2.9e-10 Score=72.86 Aligned_cols=379 Identities=11% Similarity=0.069 Sum_probs=171.9 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHh--------hcchhhhhhhhhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYD--------AVGELRYYVGWRS 72 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d--------~VgELryyvgWr~ 72 (629) |.=- -|+.-. |.+........+|. .|.... ...-+.-.|.-++ T Consensus 1 Mg~~-~~~~~~--------------------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~v~~~v~~Ia 51 (395) T protein:vir:40 1 MGFK-SWVSGF--------------------------FNEEQRTLNLTDTV--WCSIPSEKLKELSIKKWAIDSCANKIA 51 (395) T ss_pred CchH-HHHHhh--------------------------hcccccccccccch--hhccccccchhhhhhhHHHHHHHHHHH Confidence 1100 000000 00000011111122 222211 1233555678899 Q ss_pred hceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccC Q lcl|Aclame:pro 73 SSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSN 152 (629) Q Consensus 73 ~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~ 152 (629) +.+|++.+..-+ + | +.++++ ...+.+.=--.-+-..++++.++.+|-+-|++||++. +++. T Consensus 52 ~~ia~~p~~~~~---~-~---~~~~~~------~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~-~~~~----- 112 (395) T protein:vir:40 52 NTLSCAEVLTYE---K-G---EEVRKK------NWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQ-DEYI----- 112 (395) T ss_pred HHHhhCceeecc---C-C---ccccch------HHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEe-cCce----- Confidence 999999887643 2 1 123332 3334443233345568899999999999999998773 2221 Q ss_pred cccchhhheecHHHhccCCCeeEEECCCCCC--CcccCCCceEEEE-eCCCcccccCCccchhhhHHHHHHHHhhhHHHH Q lcl|Aclame:pro 153 GNPVPEWLALTPEEVRASEKKTIIELPTGDK--HEFRDGLDGMFRV-WNPRARRAREPDSPVRANLDSLKEIVRTTKTIA 229 (629) Q Consensus 153 ~~~~~eW~~vt~~eI~~~~~~~~i~lP~g~~--h~~~~~~D~~~Rv-W~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~ 229 (629) .....|...........-. .+. .+|-. .+|. ..| ||++ .++... .++....+..+.++.- ..+. T Consensus 113 -~~~~~~~~~~~~~~~~~~~--~v~-~~~~~~~~~~~-~~e-vih~r~~~~~~-----~~~~~~l~~~~~~~~~--~~~~ 179 (395) T protein:vir:40 113 -YVADSFTKNDKSLYENTYT--EVT-LKDLTLKKEFK-ESE-VLHLTLNNESI-----KSIIDGFYLLYGDLLT--AAVN 179 (395) T ss_pred -eecCCccccccccccceee--eee-ecCceeeeeec-ccc-EEEeecCCCCc-----cccchhHHHHHHHHHH--HHHH Confidence 1111232211111111101 111 11111 1111 123 3333 222111 2233333344444321 1111 Q ss_pred HHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechH Q lcl|Aclame:pro 230 NASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGE 309 (629) Q Consensus 230 naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E 309 (629) +...--.-+|++.+... + .....+.+++.+.+-+.-.....+ +.-++++ ++. T Consensus 180 -~~~~~~~~~~~l~~~~~---------------~-----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~vl--~~g 231 (395) T protein:vir:40 180 -KYKKLNSRKIIVKLKAM---------------F-----GQTPEAEEKLRLMLSERMKKFLAE-----GDSALPV--EDG 231 (395) T ss_pred -HHHhcCCCCceEEEecc---------------c-----CCCHHHHHHHHHHHHHHHHHhhcc-----CCceeec--CCC Confidence 11111112233332110 0 011234556666665432222221 2222332 221 Q ss_pred HhcCceeEEeCCch-hHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 310 LIKNVTHLKFDNQV-TEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQ 387 (629) Q Consensus 310 ~i~~ikhL~f~~dv-te~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~ 387 (629) -+++-|...... .-+. -|+.+++++.||..|.||| .||| |+.+| .-+....-++..|.|.++.|+++|++. T Consensus 232 --~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp-~~l~-~~~sn---~e~~~~~f~~~~L~P~~~~ie~~l~~k 304 (395) T protein:vir:40 232 --MEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPL-GLAK-GDTVG---LSEQVNSFLMFSINPIAEMFTDEGNRK 304 (395) T ss_pred --ceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCH-HHhc-CCCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 234444443221 1122 2456778899999999999 5666 44555 456667778889999999999999999 Q ss_pred HHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 VLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRV 464 (629) Q Consensus 388 ~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v 464 (629) +|-..-.. ..|-|=||.+.|. ++|..+.+ ..++..|++|.+++|+++|++--++++-... + T Consensus 305 Ll~~~~~~-----~g~~i~fd~~~ll-~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~--~-------- 368 (395) T protein:vir:40 305 FYGRDSVL-----ERTYMKLDTTRIK-VQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQER--F-------- 368 (395) T ss_pred cCChhhhc-----CCceEEEechhhh-ccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCcee--e-------- Confidence 98753211 2355668888873 44555443 3488999999999999999986544332100 0 Q ss_pred hcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 465 GQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDA 520 (629) Q Consensus 465 ~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~ 520 (629) +|.- ..+.+..+. ...+|.+.+.+.|+ T Consensus 369 ---------------------~~~n---~~~~~~~~~-----~~kgge~~~~~~~~ 395 (395) T protein:vir:40 369 ---------------------VTKN---YAPLGENEE-----DLKGGDINENKGDS 395 (395) T ss_pred ---------------------eccc---ccccccccc-----ccCCCCCCCCcCCC Confidence 0000 000000000 00111111111111 No 89 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=99.04 E-value=1.6e-09 Score=68.87 Aligned_cols=372 Identities=14% Similarity=0.123 Sum_probs=192.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.==+ |...+ ++.++ . ....+.. ..|..++.....- .-..|+ ..+-+.-.+.-++++||.+.+ T Consensus 1 Mg~f~-~~~~~----~~~~~-~----~~~~~~~--~~~~~~~~~~~~v-~~~~~l----~~~~v~~~i~~ia~~ia~~~~ 63 (382) T protein:vir:48 1 MPIFN-LATES----PPDNQ-G----GFFDVVD--SDFLASLKGNEWV-SAETAL----RNSDLFSIINQLSNDLATVKL 63 (382) T ss_pred Ccccc-ccccC----Ccccc-c----ccccchh--hhccccccCCccc-chHhhh----ccHHHHHHHHHHHHhhccCce Confidence 43321 11111 11110 0 0001111 1111111111110 111121 244566677889999999988 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) -.-+-+.+ .-...||+. +-..++++.+..+|-+-|++||.+.--..|. ..+++ T Consensus 64 ~~~~~~~~-----~L~~~PN~~---------------~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~-------~~~l~ 116 (382) T protein:vir:48 64 ITSRKKLQ-----GIVDNPSNN---------------ANRFNFYQSIFAQMLLGGEAFAYRWRNENGR-------DMKWE 116 (382) T ss_pred eeecchhh-----hhhhhcCCC---------------CCHHHHHHHHHHHhhhcCCEEEEEEECCCCc-------EEEEE Confidence 77654422 111223322 3457999999999999999999886323332 22355 Q ss_pred eecHHHhcc----CCCeeEEEC--CCC--CCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 161 ALTPEEVRA----SEKKTIIEL--PTG--DKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 161 ~vt~~eI~~----~~~~~~i~l--P~g--~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) .|..+.|.. .++...... ..+ ......+..| ||++=.+++.-...-.||+.++.+.+.-.....+...+.. T Consensus 117 ~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~~~~~~e-vih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~ 195 (382) T protein:vir:48 117 YLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQHVPQND-VLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSL 195 (382) T ss_pred EEcCceeEEEEcCCCCeEEEEEEecCccccceeEEcCcc-EEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 555555431 223232222 221 1111122334 4444456665556778999999998877777777777777 Q ss_pred HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhc Q lcl|Aclame:pro 233 KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIK 312 (629) Q Consensus 233 ~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~ 312 (629) +.-..-.|||-+|+.++ ......+.+.+.+ -.+..+ =++|+. +. - T Consensus 196 ~ng~~p~~il~~~~~~~----------------------~e~~~~~~~~~~~----~~~n~g-----~~~vl~--~g--~ 240 (382) T protein:vir:48 196 KNALNANGILKIKGGGL----------------------LDFKTKLSRSRQA----MKQMQG-----GPLVLD--DL--E 240 (382) T ss_pred hccCCCceEEEeCCCCC----------------------hHHHHHHHHHHHh----hccCCC-----CeeEcC--CC--c Confidence 77777888988876554 1122334443332 122222 233332 21 2 Q ss_pred CceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 313 NVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 313 ~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) +++.|.+ ...+.. +++|+..+..||..|.||| .+||. ++.|..+ -+-...-++..|.|.+..|++.|++.++.. T Consensus 241 ~~~~l~~--~~~d~q~~e~~~~~~~~Ia~afgVp~-~~lg~-~~~~~~~-~~~~~~~~~~~l~p~~~~i~~~l~~~l~~~ 315 (382) T protein:vir:48 241 DFTPLEI--KSNVSQLLKQADWTTGQFAKVYGIPD-NVVGG-QGDQQSS-LEMSSDLYSKAVSRYLRPFLSELSQKLSCD 315 (382) T ss_pred eEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCC-CCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCh Confidence 4555554 333443 7999999999999999999 67775 3445433 344566788899999999999999987654 Q ss_pred HHHhcCCChhheEeeecCcccccCCCch-HHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 392 VLMREGIDPNAYVVWHDASQLTVDPDKT-DEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 392 ~Le~eG~d~~~yv~w~DaS~L~~~Pd~t-~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) . +++- ...+| .+.... .....+++.|++|..+.|..++- .+| .+.|-.+- T Consensus 316 ~----~~~~---~~~~~-----~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~---~g~--~~~~~~~~------------ 366 (382) T protein:vir:48 316 V----DADI---FPAVD-----PTGSNYISRINSLVKTGTLAQNQGLYILQQ---AEI--LPKELPNG------------ 366 (382) T ss_pred h----hhhh---hhhhc-----cchhHHHHHHHHHhhcCccCHHHHHHHHhh---CCC--CCcchhhh------------ Confidence 2 2210 00111 111111 12235788899999999998752 222 11110000 Q ss_pred hhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) +-+.| ...-+|+ +++ + T Consensus 367 --------------~~~~~--~~~GGd~---~~~--------~ 382 (382) T protein:vir:48 367 --------------ENPNS--TLKGGEE---DGQ--------D 382 (382) T ss_pred --------------hcCCC--CCCCCCC---CCC--------C Confidence 00101 0111111 111 0 No 90 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=99.04 E-value=1e-09 Score=69.81 Aligned_cols=374 Identities=13% Similarity=0.104 Sum_probs=174.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |- |..+-++ ..+..+ ..+.+.-..|+.+.=. | ...-+.-.|.-+++.+|.+.+ T Consensus 1 M~-----if~~~~~-----~~~~~~---------------~~~~~~~~~~~~~~~~-~-~~~~v~~~v~~Ia~~iA~lp~ 53 (378) T protein:vir:94 1 MN-----LFGKVVS-----FSRGKL---------------NNDTQRVTAWQNEAVE-Y-TSAFVTNIHNKIANEITKVEF 53 (378) T ss_pred Cc-----hhHHhHh-----hhhccc---------------ccCcceeeeeecchhh-h-hhHHHHHHHHHHHHhHhhCce Confidence 21 1111000 000000 0000000012221100 1 112244456679999999987 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) -.=+.+...|......+..+ .-+..+...=----+-..++++.+..++-.-|++||..+.++.. |.. |+ T Consensus 54 ~~~~~~~~~~~~~~~~~~~~---~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~-----g~~---~~ 122 (378) T protein:vir:94 54 NHVKYKKSDVGSDTLISMAG---SDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSET-----GEL---LD 122 (378) T ss_pred eeeeeccccccccccccccc---chHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCC-----CcE---EE Confidence 55455544343322111100 11333333323344556689999999999999999986654322 211 11 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCc Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnG 240 (629) .+. ..++ .++|. +-|+++=+|. ......|+...++..+ .++.++= .-+| T Consensus 123 ~~~-----~~~~---~~~~~----------~dvih~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~-~~~g 171 (378) T protein:vir:94 123 LLF-----ANDK---KEYKP----------EELVRLTSPF--YINEDTSILDNALASI----------QTKLEQG-KLRG 171 (378) T ss_pred EEE-----ecCc---EEech----------hceeeecCcC--CcccchhHHHHHHHHH----------HHHHhhC-Cccc Confidence 111 0111 11121 2244442332 2233345544444332 2222211 2357 Q ss_pred eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccc-cccceeeeechHHhcCceeEEe Q lcl|Aclame:pro 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMA-ALIPMFAAAPGELIKNVTHLKF 319 (629) Q Consensus 241 vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~A-A~vPIva~vP~E~i~~ikhL~f 319 (629) +|-.|..++= .+.+.+.+ ..+..+++..+.+ +-=++++. ++.+.-.+ T Consensus 172 ~l~~~~~l~~----------------------~~~~~~~e----~~~~~~~~~~~~~n~~~~~vl~------~g~~~~~l 219 (378) T protein:vir:94 172 LLKINAFLDI----------------------DNTQEYRE----KALATIKNMQEGSSYNGLTPVD------NKTEIVEL 219 (378) T ss_pred ceeeCCcCCH----------------------HHHHHHHH----HHHHHHHHhhcccccccceecc------CCceEEEc Confidence 7766654430 11122222 2233443322111 11133332 22333344 Q ss_pred CCchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 320 DNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGID 399 (629) Q Consensus 320 ~~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d 399 (629) .....+..+..++....+||..|.|||..|-|- ..+ +....-++..|.|.+..|.++|++.+|-+.=...|.. T Consensus 220 ~~~~~~~~~~~~~~~~~~Ia~~fgvPp~~l~g~--~~e-----~~~~~f~~~tl~P~~~~ie~~l~~~Ll~~~e~~~g~~ 292 (378) T protein:vir:94 220 KKDYSVLNKDEIDLIKSELLTGYFMNENILLGT--ATQ-----EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKG 292 (378) T ss_pred cCChHHhhHHHHHHHHHHHHHHhCCCHHHhcCC--chH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhhhhhh Confidence 445566667778888899999999999777543 222 3333455678999999999999999986643334554 Q ss_pred hhhe-EeeecCcccccC-C-CchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhh Q lcl|Aclame:pro 400 PNAY-VVWHDASQLTVD-P-DKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAV 476 (629) Q Consensus 400 ~~~y-v~w~DaS~L~~~-P-d~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~p 476 (629) ...| -+.||.+.|..- + ++.+....++++|++|.+++|+++|++.-.+-|. . +++ T Consensus 293 ~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~--~----------------~~~---- 350 (378) T protein:vir:94 293 NLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDV--Y----------------IAN---- 350 (378) T ss_pred hcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe--e----------------eec---- Confidence 3333 367888887533 2 2233335599999999999999999986544431 0 000 Q ss_pred hcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 477 LIPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 477 ll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) ...++++-+... +...+++.++.+...+ T Consensus 351 --~n~~~~~~~~~~-------~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 351 --LNAVAVKNLSDL-------QGNRKDVTSTDETNNQ 378 (378) T ss_pred --ccccchhcchhc-------ccccCCCCCCCCCCCC Confidence 001111111000 0000111111111111 No 91 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=99.01 E-value=1.3e-09 Score=69.24 Aligned_cols=382 Identities=13% Similarity=0.076 Sum_probs=191.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCccc-chhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPG-KAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~-~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |.-.=+...++.+..+.... .+....... ..+.....+..+. .=+ .+-.-..+-+.-.|.=+++.+|.+. T Consensus 1 m~m~~f~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~v~--~~~al~~~~v~~~i~~ia~~ia~lp 71 (392) T protein:vir:10 1 MILPILNFINQTNDPPEVGS------VQSYFPDGNDAQIMESLLGDNNE-WVS--ARAALRNSDLFSIILQLSSDLAIVK 71 (392) T ss_pred Ccchhhhhhhcccccccccc------cccccccCchhhhhhhhcCCCCc-eec--hHHhhccHHHHHHHHHHHHhhccCc Confidence 66666666665444333111 111111100 0011111111110 001 1111235667777888999999988 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..-+-+.+ .=.+.||+ -+...++++.++.++-+-|++|+.+.--..|. +. +. T Consensus 72 ~~~~~~~~~-----~l~~~PN~---------------~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~------~~-~L 124 (392) T protein:vir:10 72 INAEKKKNQ-----GIIDNPST---------------NANKHGFWQSMFAQLLLGGEAFAYRWRNANGA------DM-KW 124 (392) T ss_pred eeeccchhh-----hHhhcCCC---------------CCCHHHHHHHHHHHhhhcCcEEEEEEECCCCc------EE-EE Confidence 865433211 11112222 34567899999999999999999876333332 11 23 Q ss_pred heecHHHhc--c--CCCeeEEE--CC--CCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 160 LALTPEEVR--A--SEKKTIIE--LP--TGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 160 ~~vt~~eI~--~--~~~~~~i~--lP--~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) +.|-.+.|. . .++....+ .. .+.+....+..|+ |++=.+.+.-...--||+.++...+.=...+.+...+. T Consensus 125 ~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ei-ih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~ 203 (392) T protein:vir:10 125 EYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDL-IHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) T ss_pred EEEcCceeEEEEcCCCceEEEEEEecCcccceeEEEccccE-EEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 333333332 2 22222222 22 2222222334454 44434444444556799988888876666666666666 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHh Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i 311 (629) .+.-..-.|||-+|+..... ++-++.+.+ ++.. +..+-=++|+ |+. T Consensus 204 f~ng~~p~gil~~~~~~~~~------------------------~~~~~~~~~----~~~~--~~~~g~~~vl--~~g-- 249 (392) T protein:vir:10 204 LNSSLNVPGVLTVKGGGLLS------------------------DKDKASRSR----SFMK--RSRSGGPVVL--DDL-- 249 (392) T ss_pred HhccCCCceEEEeCCCCCch------------------------HHHHHHHHH----HHhc--cccCCCeeec--CCC-- Confidence 67666777888777643321 111222221 1111 1112223443 322 Q ss_pred cCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 KNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) Q Consensus 312 ~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr 390 (629) -+++.|.. ...+.. +++|+..+..||+.|.||| .+||.. ..+. +..+-...-++..|.|.++.|+++|++.++. T Consensus 250 ~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgVpp-~~lg~~-~~~~-~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~ 324 (392) T protein:vir:10 250 EEFTALEI--KSNVAQLLSQTDWTSKQYAKVYGLPD-SYIGGQ-GDQQ-SSIQQISGMYASALNRYLRPAISELEYKLSD 324 (392) T ss_pred ceEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCC-CCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 24455544 333333 7999999999999999999 667864 3333 2233344567889999999999999998765 Q ss_pred HHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 391 TVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 391 ~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) . -++|... + ++.+.+ .+.+....+++.|++|.++.|++++ ..|| .+.| .|. T Consensus 325 ~----~~~d~~~-~--~~~d~~----~~~~~~~~l~~~g~~t~nE~r~~l~---~~g~--~p~e-~r~------------ 375 (392) T protein:vir:10 325 H----ISVNMRP-A--IDPLGD----NYLSTISTATRWGALAENQATFVLQ---EAGY--IPKD-LPA------------ 375 (392) T ss_pred c----ccccchh-h--hccCHH----HHHHHHHHHHhCCCcCHHHHHHHHH---hcCC--Cccc-cch------------ Confidence 4 1333221 1 121111 1123345688999999999998872 1222 1111 110 Q ss_pred hhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEP 514 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~eP 514 (629) ... .+|..+.+ .++.-| T Consensus 376 ------------------~e~-l~~~~~Gd--------~~~p~p 392 (392) T protein:vir:10 376 ------------------PEN-TNKKTTGQ--------SNEPVP 392 (392) T ss_pred ------------------hcC-CCCCCCCC--------CCCCCC Confidence 000 01111000 111112 No 92 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=99.01 E-value=1.3e-09 Score=69.24 Aligned_cols=382 Identities=13% Similarity=0.076 Sum_probs=191.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCccc-chhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPG-KAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVR 79 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~-~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~r 79 (629) |.-.=+...++.+..+.... .+....... ..+.....+..+. .=+ .+-.-..+-+.-.|.=+++.+|.+. T Consensus 1 m~m~~f~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~v~--~~~al~~~~v~~~i~~ia~~ia~lp 71 (392) T protein:vir:39 1 MILPILNFINQTNDPPEVGS------VQSYFPDGNDAQIMESLLGDNNE-WVS--ARAALRNSDLFSIILQLSSDLAIVK 71 (392) T ss_pred Ccchhhhhhhcccccccccc------cccccccCchhhhhhhhcCCCCc-eec--hHHhhccHHHHHHHHHHHHhhccCc Confidence 66666666665444333111 111111100 0011111111110 001 1111235667777888999999988 Q ss_pred EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 80 LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 80 L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) +..-+-+.+ .=.+.||+ -+...++++.++.++-+-|++|+.+.--..|. +. +. T Consensus 72 ~~~~~~~~~-----~l~~~PN~---------------~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~------~~-~L 124 (392) T protein:vir:39 72 INAEKKKNQ-----GIIDNPST---------------NANKHGFWQSMFAQLLLGGEAFAYRWRNANGA------DM-KW 124 (392) T ss_pred eeeccchhh-----hHhhcCCC---------------CCCHHHHHHHHHHHhhhcCcEEEEEEECCCCc------EE-EE Confidence 865433211 11112222 34567899999999999999999876333332 11 23 Q ss_pred heecHHHhc--c--CCCeeEEE--CC--CCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 160 LALTPEEVR--A--SEKKTIIE--LP--TGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 160 ~~vt~~eI~--~--~~~~~~i~--lP--~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) +.|-.+.|. . .++....+ .. .+.+....+..|+ |++=.+.+.-...--||+.++...+.=...+.+...+. T Consensus 125 ~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ei-ih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~ 203 (392) T protein:vir:39 125 EYLRPSQVNTYYFEYENGMYYNITFDDPKIEPILQAPQSDL-IHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISS 203 (392) T ss_pred EEEcCceeEEEEcCCCceEEEEEEecCcccceeEEEccccE-EEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 333333332 2 22222222 22 2222222334454 44434444444556799988888876666666666666 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHh Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i 311 (629) .+.-..-.|||-+|+..... ++-++.+.+ ++.. +..+-=++|+ |+. T Consensus 204 f~ng~~p~gil~~~~~~~~~------------------------~~~~~~~~~----~~~~--~~~~g~~~vl--~~g-- 249 (392) T protein:vir:39 204 LNSSLNVPGVLTVKGGGLLS------------------------DKDKASRSR----SFMK--RSRSGGPVVL--DDL-- 249 (392) T ss_pred HhccCCCceEEEeCCCCCch------------------------HHHHHHHHH----HHhc--cccCCCeeec--CCC-- Confidence 67666777888777643321 111222221 1111 1112223443 322 Q ss_pred cCceeEEeCCchhHHH-HHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 312 KNVTHLKFDNQVTEVA-IKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLR 390 (629) Q Consensus 312 ~~ikhL~f~~dvte~a-iktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr 390 (629) -+++.|.. ...+.. +++|+..+..||+.|.||| .+||.. ..+. +..+-...-++..|.|.++.|+++|++.++. T Consensus 250 ~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgVpp-~~lg~~-~~~~-~~~~~~~~f~~~~l~P~~~~ie~~l~~~L~~ 324 (392) T protein:vir:39 250 EEFTALEI--KSNVAQLLSQTDWTSKQYAKVYGLPD-SYIGGQ-GDQQ-SSIQQISGMYASALNRYLRPAISELEYKLSD 324 (392) T ss_pred ceEEEccC--ChhHHHHHHHHHHHHHHHHHHhCCCH-HHhCCC-CCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 24455544 333333 7999999999999999999 667864 3333 2233344567889999999999999998765 Q ss_pred HHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 391 TVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 391 ~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) . -++|... + ++.+.+ .+.+....+++.|++|.++.|++++ ..|| .+.| .|. T Consensus 325 ~----~~~d~~~-~--~~~d~~----~~~~~~~~l~~~g~~t~nE~r~~l~---~~g~--~p~e-~r~------------ 375 (392) T protein:vir:39 325 H----ISVNMRP-A--IDPLGD----NYLSTISTATRWGALAENQATFVLQ---EAGY--IPKD-LPA------------ 375 (392) T ss_pred c----ccccchh-h--hccCHH----HHHHHHHHHHhCCCcCHHHHHHHHH---hcCC--Cccc-cch------------ Confidence 4 1333221 1 121111 1123345688999999999998872 1222 1111 110 Q ss_pred hhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCC Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEP 514 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~eP 514 (629) ... .+|..+.+ .++.-| T Consensus 376 ------------------~e~-l~~~~~Gd--------~~~p~p 392 (392) T protein:vir:39 376 ------------------PEN-TNKKTTGQ--------SNEPVP 392 (392) T ss_pred ------------------hcC-CCCCCCCC--------CCCCCC Confidence 000 01111000 111112 No 93 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=98.98 E-value=2e-09 Score=68.25 Aligned_cols=383 Identities=12% Similarity=0.046 Sum_probs=162.1 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.=-. ++-.+ ...-.+ ...-...++ ..+ ....+ ...-+.-.+.-+++.+|.+.+ T Consensus 1 Mgl~d-~~~~~--~~~~~~-----------~~~~~~~~~------~~~-----~~~~l-~~~~v~~~i~~Ia~~ia~lp~ 54 (395) T protein:vir:96 1 MGILD-FFSFK--KSGTLS-----------DDDSGSTTS------EKL-----TNVVL-KEDALYKCVNYLARIISKSTF 54 (395) T ss_pred Ccchh-hhcCC--CCcccc-----------ccccccchh------hhc-----chhhh-hhHHHHHHHHHHHHhhcccee Confidence 22211 01000 000000 000000000 000 00112 234455567889999999988 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+- |.. +..++ .+..+.+.=.---+-..++++.++.+|..-|++||.+. |+.+. .....| T Consensus 55 ~v~~~----~~~-~~~~~------~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~-~~~~~-----~~~~~~- 116 (395) T protein:vir:96 55 RIKAP----EKL-TENQK------DWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVI-PGKGI-----YVADAF- 116 (395) T ss_pred EEEeC----Ccc-ccccc------hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEE-cCCce-----ecCCcc- Confidence 76542 211 11222 23344443233445678999999999999999998875 33221 111111 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhC Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGN 239 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gn 239 (629) ......+. .....+..-.+.........|++ ||.=++.-+.. -++++...-+.+..+..+.. .+..+|...+ T Consensus 117 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~dvih~k~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~---~~~~~~~~~~ 189 (395) T protein:vir:96 117 TQDKKLSG--NKFKVSRVQGQTYEKIFTFDQVIYLKNDNSDLMLK--VESLWEEYGELLGHVINNQK---IANQIRFTMT 189 (395) T ss_pred cccccccc--ceeeeeeeccceeeeEeccCceEEecccCCccccc--cccccchHHHHHHHHHHHHH---HHHHHHHHhh Confidence 11110000 00011111111111111223333 44333322222 23343333333333322211 1112344433 Q ss_pred ceeeecCCccCCcccCCCcCCCCCccccccCCchh-HHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEE Q lcl|Aclame:pro 240 GVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPA-VQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLK 318 (629) Q Consensus 240 GvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a-~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~ 318 (629) +. -+. ..+ .... ....+. .+...+++ +-...+.. .....++++ + ++.+... T Consensus 190 ~~--~~~-~~~------~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~v~~l--~----~g~~~~~ 241 (395) T protein:vir:96 190 PP--KDK-VRE------RAQE--------NSDGGRQPKSDKDFF-KRTIEKIR----TESVVGIPV--T----ANTNYEE 241 (395) T ss_pred hc--ccc-ccc------ceee--------ccCchhhHHHHHHHH-HHHHHHhh----cCCcceEEc--c----CCceeEe Confidence 32 110 000 0000 000111 11122222 11112222 122222222 2 3344444 Q ss_pred eCCchhHH-------HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 319 FDNQVTEV-------AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 319 f~~dvte~-------aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) +....++. -.+++++.+..||..|.|||. ||| +|..+..+....=++..|.|.+..|+++|++.+|.+ T Consensus 242 l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~-~l~----~~~sn~e~~~~~f~~~~L~P~~~~ie~~l~~~Ll~~ 316 (395) T protein:vir:96 242 YGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPIS-LLH----GDIADNQKNYELLLEGPIESLITNIVDGLEYAIFDK 316 (395) T ss_pred cccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHH-Hhc----CCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh Confidence 43332221 233567889999999999994 555 345567777777888899999999999999998865 Q ss_pred HHHhcCCChhheEeeecCcccccCCCchHH---HHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCc Q lcl|Aclame:pro 392 VLMREGIDPNAYVVWHDASQLTVDPDKTDE---ARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDP 468 (629) Q Consensus 392 ~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~e---A~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P 468 (629) .--..| |-|.+| .| .+.|..+. +..+++.|++|.+++|+++|++.-++..- =+-+ +..| T Consensus 317 ~e~~~~-----~~f~~~--~l-~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~g-----D~~~----~~~N- 378 (395) T protein:vir:96 317 SETLEG-----SFIKVT--GL-KNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLG-----KVLY----MTKN- 378 (395) T ss_pred hhhcCc-----eeEeec--ch-hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC-----ceee----eccc- Confidence 322112 124444 33 23343333 35588999999999999999986433210 0000 0000 Q ss_pred chhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCC Q lcl|Aclame:pro 469 NLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASG 507 (629) Q Consensus 469 ~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~ 507 (629) ++| ....+.| .+++.+. T Consensus 379 -----~~~---------------~~~~gge--~~~~~~~ 395 (395) T protein:vir:96 379 -----YES---------------VLERGGE--VDEEVET 395 (395) T ss_pred -----cee---------------chhccCC--CCCCCCC Confidence 000 0011111 1111000 No 94 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=98.97 E-value=2.9e-09 Score=67.39 Aligned_cols=375 Identities=13% Similarity=0.117 Sum_probs=172.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.==. |++.. .|.-+ .+.+...| .|+.+.=.+ ...-++=.|.-+++.+|.+.| T Consensus 1 M~~f~-k~~~~---------~~~~~-----~~~~~~~~----------~~~~~~~~~--~~~~v~~~v~~ia~~iA~lp~ 53 (378) T protein:vir:85 1 MNLFG-KVVSF---------SRGKL-----NNDTQRVT----------AWQNEAVEY--TSAFVTNIHNKIANEITKVEF 53 (378) T ss_pred Cchhh-hhhhh---------hhccc-----ccCCccee----------eeeccchhh--hhHHHHHHHHHHHHhHhhCce Confidence 22111 11000 00000 00000000 122221111 011133347789999999998 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..=+.+.+.+.+-...+..+ ..+..+.+.=----+...++.+.++.++..=|++||..+.++.. |.....|+ T Consensus 54 ~~~~~~~~~~~~~~~~~~~~---~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~-----g~~~~~~~ 125 (378) T protein:vir:85 54 NHVKYKKSDVGSDTLISMAG---SDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSET-----GELLDLLF 125 (378) T ss_pred eEEEEecccccccccccccc---chHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCC-----ceEEEEEe Confidence 77676655444332111100 12334443323345667789999999999999999987654322 22111111 Q ss_pred eecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCc Q lcl|Aclame:pro 161 ALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNG 240 (629) Q Consensus 161 ~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnG 240 (629) . .++ -.|.. .| +|++=+|. .-....+....++ +.|.++.++--+ +| T Consensus 126 ~--------~~~-----------~~~~~-~d-vih~~~~~--~~~~~~~~~~~a~----------~~~~~~~~~~~~-~g 171 (378) T protein:vir:85 126 A--------NDK-----------KEYKP-EE-LVRLVSPF--YINEDTSILDNAL----------ASIQTKLEQGKL-RG 171 (378) T ss_pred c--------CCC-----------EEEcc-cc-eEEEecCc--CccchhhHHHHHH----------HHHHHHHhcCCc-ce Confidence 1 111 11211 12 23322222 1112223322222 223333332212 57 Q ss_pred eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeC Q lcl|Aclame:pro 241 VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFD 320 (629) Q Consensus 241 vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~ 320 (629) +|-+|..++ ..+.+++.+.+-+.-.....-.+ +-=++++. + -.+++-|... T Consensus 172 ~l~~~~~l~----------------------~~~~~~~~~~~~~~~~~~~~~~~---~g~~~vl~--~--g~~~~~l~~~ 222 (378) T protein:vir:85 172 LLKINAFLD----------------------IDNTQEYREKALATIKNMQEGSS---YNGLTPVD--N--KTEIVELKKD 222 (378) T ss_pred EEEeCCcCC----------------------HHHHHHHHHHHHHHHHHhhcccc---cccceecC--C--CceEEeccCC Confidence 776665443 11223344444322221111111 11233332 2 1355666654 Q ss_pred CchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCh Q lcl|Aclame:pro 321 NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDP 400 (629) Q Consensus 321 ~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~ 400 (629) . .+..+++++.....||..|.|||..|-| +..+ +....-++..|.|.+..|.++|++.+|.+.=...|... T Consensus 223 ~--~~~~~~~~~~~~~~Ia~~fgVPp~~l~~--s~~e-----~~~~~f~~~tL~P~~~~ie~~l~~kLl~~~er~~~~~~ 293 (378) T protein:vir:85 223 Y--SVLNKDEIELIKSELLTGYFMNENILLG--TATQ-----EQQIYFYNSTIIPLLIQLEKELTYKLISTNRRRVVKGN 293 (378) T ss_pred h--hhhhHHHHHHHHHHHHHHhCCCHHHhcC--CchH-----HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhhhhhhc Confidence 4 3344567777778999999999966633 3322 33344677889999999999999999876433345444 Q ss_pred hheE-eeecCcccccC-CC-chHHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhh Q lcl|Aclame:pro 401 NAYV-VWHDASQLTVD-PD-KTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVL 477 (629) Q Consensus 401 ~~yv-~w~DaS~L~~~-Pd-~t~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pl 477 (629) ..|+ +.||.+.|..- +. +.+....++..|++|..++|+++|++.-.+-|. . +++. T Consensus 294 ~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD~--~----------------~~~~---- 351 (378) T protein:vir:85 294 LYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDI--Y----------------IANL---- 351 (378) T ss_pred cccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe--E----------------eecc---- Confidence 4333 57888877533 22 222235589999999999999999975444331 0 0000 Q ss_pred cccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCC Q lcl|Aclame:pro 478 IPELADVEFPTPTVALPPAEEQDGDEEASGASRREE 513 (629) Q Consensus 478 l~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~e 513 (629) ...+++-+... ......+..+.+...+ T Consensus 352 --N~~~~~~~~~~-------~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:85 352 --NAVAVKNLSDL-------QGSRKDVASTDETNNQ 378 (378) T ss_pred --cccccccchhh-------cCccCCCCCCCCCCCC Confidence 00011100000 0000000001111111 No 95 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=98.93 E-value=9e-09 Score=64.70 Aligned_cols=379 Identities=12% Similarity=0.060 Sum_probs=166.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.=-+- + .+++. ..+ ..+..+.. + +.+..+ ..+ ...-+.-.+.=++++||.+.+ T Consensus 1 MGlf~~-~-~~~~~-------~~~----~~~~~~~~-~---------~~~~~~--~~~-~~~~v~~~I~~ia~~iA~lp~ 54 (395) T protein:vir:98 1 MGILDF-F-SFKKS-------GTL----SDDDSGST-T---------SEKLTN--VVL-KEDALYKCVNYLARIISKSTF 54 (395) T ss_pred Ccchhh-h-cCCCc-------ccc----cccccchh-h---------hhhcch--hhh-hhHHHHHHHHHHHHHHhhCce Confidence 332210 1 11110 000 00000000 0 001111 112 234455567889999999888 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+-+ + +. ..+++ +..+...=.---+-..++++.++.+|.+-|++||+++-..+.. +.+++ T Consensus 55 ~~~~~~-~-~~---~~~~~------~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~-------~~~~~ 116 (395) T protein:vir:98 55 RLKTPE-K-LT---ENQKD------WLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIY-------VADSF 116 (395) T ss_pred eEEecC-C-cc---cccch------HHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCcee-------cCCcc Confidence 775533 1 21 11221 3334433233445678999999999999999999875322111 11112 Q ss_pred eecHH-------HhccCCCeeEEECCCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 161 ALTPE-------EVRASEKKTIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 161 ~vt~~-------eI~~~~~~~~i~lP~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) .+... .+...+.....+++. .|++ ||..++..+.. -++++...-..+.......+ .+. T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~evih~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~ 182 (395) T protein:vir:98 117 TQDKKISGSQFKVSRVQGQTYEKTFTF---------DQVIYLKNDNSDLMSK--VESLWEEYGELLGHVINNQK---IAN 182 (395) T ss_pred cccccccCcccceeeecCceeeeEecC---------ccEEEecCCCCCcccc--ccchhhhHHHHHHHHHHHHH---HHH Confidence 11111 010111111122222 2333 45444433332 23344433333333322211 122 Q ss_pred HhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhc Q lcl|Aclame:pro 233 KSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIK 312 (629) Q Consensus 233 ~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~ 312 (629) ..|..+++- -+ ...+... .. ..+.-..+.+++++-+. ..+.. ....-++++ ++ -- T Consensus 183 ~~~~~~~~~--~~-~~~~~~~---------~~----~~~~~~~~~~~~~~~~~-~~~~~----~~~~~v~~l--~~--g~ 237 (395) T protein:vir:98 183 QIRFTMIPP--KD-KVRERAQ---------EN----SDGGRQSKSDKDFFKRT-VEKIR----TESVVGIPV--TA--NT 237 (395) T ss_pred HHHHhhccc--cc-ccccccc---------cc----CCcHHHHHHHHHHHHHH-Hhhhh----cCCcceeec--CC--Cc Confidence 344444432 11 1111000 00 00111112222222211 11211 111111221 21 12 Q ss_pred CceeEEeC-----CchhHHHHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 313 NVTHLKFD-----NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQ 387 (629) Q Consensus 313 ~ikhL~f~-----~dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~ 387 (629) +.+-|.+. +.-++=-+++|+..+..||..|.|||. +|| | |..+.-+....-++..|.|.+..|.++|++. T Consensus 238 ~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~-~l~-~---~~sn~e~~~~~f~~~tl~P~~~~ie~~l~~k 312 (395) T protein:vir:98 238 NYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPIS-LLH-G---DIADNQKNYELLLEGPIESLITNIVDGLEYA 312 (395) T ss_pred eeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHH-Hhc-C---CcccHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 33334322 111223578999999999999999995 555 2 3445566666677888999999999999999 Q ss_pred HHHHHHHhcCCChhheEeeecCcccccCCCchHHH---HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 388 VLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEA---RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRV 464 (629) Q Consensus 388 ~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA---~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v 464 (629) +|.+.....|+ .||.+.| .+.|..+.+ ..+++.|++|.+++|+++|++--.+..- =+ T Consensus 313 ll~~~~~~~g~-------~f~~~~l-~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~g-----D~------- 372 (395) T protein:vir:98 313 IFDKSETLQGS-------FIKVTGL-KNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLG-----KV------- 372 (395) T ss_pred cCChhhhcCcc-------eeeehhh-hccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC-----ce------- Confidence 98764332332 1344444 333444333 3478999999999999999975322110 00 Q ss_pred hcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCC Q lcl|Aclame:pro 465 GQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDT 516 (629) Q Consensus 465 ~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdT 516 (629) -+++ ...+ | ....+.+ .+++ .+| T Consensus 373 ----~~~~------~n~~----~----~~~~gge--~~~~---------~~~ 395 (395) T protein:vir:98 373 ----LYMT------KNYE----S----VLERGGE--VDEE---------VET 395 (395) T ss_pred ----eeec------ccce----e----cccccCC--CCCC---------CCC Confidence 0000 0000 0 0011111 1111 011 No 96 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=98.87 E-value=2.5e-09 Score=67.73 Aligned_cols=330 Identities=13% Similarity=0.129 Sum_probs=174.0 Q ss_pred cch---hhhhccCCcccchhHHHHHHHhhcchhhh--hhh---------------hhhhceeeeEEEEEeecCCCCCCCC Q lcl|Aclame:pro 35 GKA---FRKAMGSSTRTDWQEDAWKAYDAVGELRY--YVG---------------WRSSSASRVRLIASAIDPDTGLPTG 94 (629) Q Consensus 35 ~~~---~kk~~~~~~~~~WQ~eAW~~~d~VgELry--yvg---------------Wr~~s~Sr~rL~aseiD~DtG~ptg 94 (629) =.. |+|....+ ..+| |.++..-|...+ +|. =+++++|.+++. T Consensus 1 M~~~~~f~~r~~~~-~~~~----~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~------------- 62 (359) T protein:vir:10 1 MSILNPFERRSSIT-PNNY----YPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI------------- 62 (359) T ss_pred CcccchhhccccCC-CCcc----hhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc------------- Confidence 122 33322211 2233 444433332211 222 334444444431 Q ss_pred CCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhc--cCCC Q lcl|Aclame:pro 95 SIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVR--ASEK 172 (629) Q Consensus 95 ~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~--~~~~ 172 (629) .+ .....+....-- -+-..++++.++.++..-|++|+.++--..|. +. +++.|..+.|. ..++ T Consensus 63 --~~-----~~~~~L~~~PN~-~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~------~~-~l~~l~~~~v~i~~~~~ 127 (359) T protein:vir:10 63 --GN-----QVFTSVLNNPSH-LTNAFSFWQTAILNLLLNGNVFLAILKGDNSL------MK-ELRLIPSNAITIDLTDD 127 (359) T ss_pred --cc-----hHHHHHhhcccc-cCCHHHHHHHHHHhccccCceEEEEEECCCCe------EE-EEEEeCCceEEEEEcCC Confidence 11 122223333322 23556889999999999999998775222222 11 23333333222 2233 Q ss_pred eeEEEC--CC-CCCCcccCCCceE-EEE--eCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecC Q lcl|Aclame:pro 173 KTIIEL--PT-GDKHEFRDGLDGM-FRV--WNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPH 246 (629) Q Consensus 173 ~~~i~l--P~-g~~h~~~~~~D~~-~Rv--W~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPq 246 (629) +..... .. |...+| ...|++ ||. +++++-.-..--||+.++...+.-..-..+...+..+.=..-.|||-+|+ T Consensus 128 ~~~y~~~~~~~~~~~~~-~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~ 206 (359) T protein:vir:10 128 TLTYEVNQFDDYPSAKY-NASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQ 206 (359) T ss_pred eEEEEEEecCCceEEEE-cccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC Confidence 222111 22 222222 233443 443 34444455567788888777776666666666665555555567887776 Q ss_pred CccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHH Q lcl|Aclame:pro 247 EMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEV 326 (629) Q Consensus 247 e~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~ 326 (629) ... ...+.+.+.+.+-. .+.-.+ +--|+|+. + --+++.|.+ ...+. T Consensus 207 ~~l---------------------~~e~~~~~~~~~~~----~~~~~n---~g~~~vl~--~--g~~~~~l~~--~~~d~ 252 (359) T protein:vir:10 207 GTL---------------------SSEAKDSIRKEFEK----ANGGNN---SGRVMVLD--Q--SADFSTVSI--NADVA 252 (359) T ss_pred CCC---------------------CHHHHHHHHHHHHH----HhCccc---cCCceecC--C--CcceeeecC--CHHHH Confidence 431 12234556665532 221111 12233332 2 125555555 33444 Q ss_pred -HHHHHHHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEe Q lcl|Aclame:pro 327 -AIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVV 405 (629) Q Consensus 327 -aiktR~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~ 405 (629) -+++|+..+..||..|.|||. +||...+.| .+.-++. +-....+.|.+.-+++.|.+.+.++. ++|.. |.+ T Consensus 253 q~le~~~~~~~~Ia~~fgVPp~-~lg~~~~~~-~~~~~~e-~~~~~~l~~~l~p~~~~l~~~l~~~~----~~~~~-~~~ 324 (359) T protein:vir:10 253 NYLNSMNWGRTQIAKAFGVSDS-YLNGTGDQQ-SSLDQIK-DLYVNALNRFIEPLISELRIKCDSSI----GVDMS-PIT 324 (359) T ss_pred HHHHHHHHHHHHHHHHhCCCHH-HhCCCCccc-ccHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhh----cccch-hhh Confidence 478999999999999999995 555322333 3444443 33344578888888888888877664 34444 445 Q ss_pred eecCcccccCCCchHHHHHHHHcCCCCHHHHHHHhCCCcccc Q lcl|Aclame:pro 406 WHDASQLTVDPDKTDEARDAFDRGAITAEAMVKMLGLADDTV 447 (629) Q Consensus 406 w~DaS~L~~~Pd~t~eA~~~~~~G~it~ealr~~~Gl~ed~~ 447 (629) .||.+.+. .....+++.|++|.+|.|+.+|+.-= + T Consensus 325 ~~d~~~~~------~~~~~~~~~G~~t~NE~R~~l~~~pv-~ 359 (359) T protein:vir:10 325 DYSNSVFK------ADILNWVKEGIIEPTEAKTLLESKGI-I 359 (359) T ss_pred hcCHHHHH------HHHHHHHhCCCcCHHHHHHHhCCCCC-C Confidence 56654432 23456899999999999999998732 2 No 97 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=98.68 E-value=1.1e-07 Score=58.68 Aligned_cols=462 Identities=16% Similarity=0.109 Sum_probs=202.3 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccc--hh---hhhccCCcccchh-------HHHHHHHhhcchhhhhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGK--AF---RKAMGSSTRTDWQ-------EDAWKAYDAVGELRYYV 68 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~--~~---kk~~~~~~~~~WQ-------~eAW~~~d~VgELryyv 68 (629) |--+.-|.+.......+. ++++.... .+...+. +. |.....+...++. ++|-+++.--|=.+=++ T Consensus 1 m~~~~~r~~~~~a~~~~~--~~~~~~~~-~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av 77 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPE--QSASLGGG-GLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAV 77 (553) T ss_pred Ccchhhhhhcccccccch--hhhhhhcc-cccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 776666666655444442 23333221 2221110 11 1112222222222 23333333333222222 Q ss_pred h-hhhhceee-eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHh-------------cCChhhHHHHHHHHhcceee Q lcl|Aclame:pro 69 G-WRSSSASR-VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQI-------------AGGALGQAQLIKRVVEQLTV 133 (629) Q Consensus 69 g-Wr~~s~Sr-~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~i-------------aGG~lGQaqLlkr~~~~LtV 133 (629) . +..|-|+- .++- +..|.. ..+ |-.++ ....+++.++.. +.|.+-=.+|.+.+...+.+ T Consensus 78 ~~~~~nvVG~Gi~~~-~~~~~~-~l~-g~~~~---~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~ 151 (553) T protein:vir:63 78 GYQRDSIVGAQYRLN-SMPDIN-VIP-GATEE---WAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVK 151 (553) T ss_pred HHHHHhhccCCceee-eccchh-hhc-CCCHH---HHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHh Confidence 2 33333332 1111 111100 000 11111 123344444322 45777777777778888888 Q ss_pred cCceEEEEEEcCCcccccCcccchhhheecHHHhccCCC------------------eeEEEC----CCC--------CC Q lcl|Aclame:pro 134 AGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRASEK------------------KTIIEL----PTG--------DK 183 (629) Q Consensus 134 pGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~~~~------------------~~~i~l----P~g--------~~ 183 (629) -||+++.++.++..... .+- .=..|..+-|....+ -+..-+ |-+ .. T Consensus 152 dGE~~~~~~~~~~~~~~-~~~---~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~ 227 (553) T protein:vir:63 152 TGEVLATAEWDRAANRP-YAT---CFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYK 227 (553) T ss_pred CCceEEEeeeccCCCCc-ccc---eEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccc Confidence 99999988776532110 000 012333444432211 111111 110 00 Q ss_pred Ccc----c-CCCceEEEEeCCCcccccC--CccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCcee-eecCCccCCcccC Q lcl|Aclame:pro 184 HEF----R-DGLDGMFRVWNPRARRARE--PDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV-FVPHEMSLPSMNA 255 (629) Q Consensus 184 h~~----~-~~~D~~~RvW~P~Prra~e--aDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvl-fvPqe~slP~~~a 255 (629) ..+ . -+..-|+||++|. |.-| --|.--++|..|+ .+.++..+......+.+-+. ||=+++ |+.+. T Consensus 228 ~~r~~~~~~v~a~~vlH~f~~~--r~gQ~RGis~lapvl~~l~---~l~~y~daeL~~a~i~A~~a~fi~~~~--~~~~~ 300 (553) T protein:vir:63 228 WKFVQQSKPWGRRQVIHILEPR--EPDQSRGIADIVSGLKDMR---MAKRFKEMSLQNAVINASYAAAIESEL--PPEFI 300 (553) T ss_pred eeeeccccccChhHheeccccc--CCCcccCCchHHHHHHHHH---HHhHHHHHHHHHHHHhhhheeeeecCC--Chhhh Confidence 000 0 1233355555442 2211 1233334444444 44455555555555555544 554332 22211 Q ss_pred CCcC--CCC-CccccccCCchhHHHHHHHHHHHHhhcccCccccc-cccceeeeechHHhcCceeEEeCCchhHHHHHHH Q lcl|Aclame:pro 256 PVAS--NKP-GAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMA-ALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTR 331 (629) Q Consensus 256 p~~~--~~p-G~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~A-A~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR 331 (629) .... ..+ |.+.... ....+.+... ..-....++. .+ |+---|||-++-++-=+ -+.--..+. T Consensus 301 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~l~pG~--i~~L~pGe~i~~~~p~~----p~~~~~~F~ 366 (553) T protein:vir:63 301 HSQMSGGSPNADMVGIF--GKYMDALKAY------VGGANNIQIDGAK--IPHLFPGTKLNLKPMGT----PGGVGSEFE 366 (553) T ss_pred hhhcccccccccccccc--cccccccccc------cccccceeecCce--eeecCCCCeeeecCCCC----CCCCHHHHH Confidence 1111 101 1111000 0000000000 0000000110 11 12223343332221111 123334667 Q ss_pred HHHHHHHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHhcCCCh-------- Q lcl|Aclame:pro 332 NDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHIL---PPVEMLCEAITNQVLRTVLMREGIDP-------- 400 (629) Q Consensus 332 ~daIrrlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~---P~~~~i~~alt~~~lr~~Le~eG~d~-------- 400 (629) +..+|.+|.|++||-|.|.|==|++|++|+-+-.-|..+.--. =+...+|+-|++.||.-++..--|+- T Consensus 367 ~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~ 446 (553) T protein:vir:63 367 ASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDL 446 (553) T ss_pred HHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchh Confidence 8899999999999999999965799999997766665443111 13456899999999988775444431 Q ss_pred -------hhe--EeeecCcccccCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcch Q lcl|Aclame:pro 401 -------NAY--VVWHDASQLTVDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNL 470 (629) Q Consensus 401 -------~~y--v~w~DaS~L~~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~L 470 (629) ..| +-|+=..-.-+||-|.-+| +.+.+.|..|-+..-+++|.+-++.. +|+|.+.-..+.. T Consensus 447 ~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G~~t~~~~~a~~G~D~~~v~--------~q~a~e~~~~~~~- 517 (553) T protein:vir:63 447 FYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTYEREIARLGGDFRKSF--------AQRAREDALLKKY- 517 (553) T ss_pred hcchhhhhhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHH--------HHHHHHHHHHHHc- Confidence 123 4588888889999998777 77999999999999999998876333 3555544222111 Q ss_pred hhhhhhhcccccCccCCCCCCC-CCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccc Q lcl|Aclame:pro 471 LPTLAVLIPELADVEFPTPTVA-LPPAEEQDGDEEASGASRREEPDTEDDAGTDDSD 526 (629) Q Consensus 471 i~~l~pll~~~~~~~~p~p~~a-~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~ 526 (629) ++.++..+.. ...+++..+. .++.+..++++++. + T Consensus 518 ------------Gl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----e 553 (553) T protein:vir:63 518 ------------GLTFNLSAKRSLGDGRDAATG----IAEDPAAAQTSQQG-----E 553 (553) T ss_pred ------------CCCCCCCCccccCCCcccCCC----CCCCCCCCCccccc-----C Confidence 1122211111 0001110000 00111111222111 1 No 98 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.56 E-value=2.9e-07 Score=56.44 Aligned_cols=454 Identities=15% Similarity=0.101 Sum_probs=192.9 Q ss_pred CcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchh-------HHHHHHHhhcchhhhhhh-hhhhce Q lcl|Aclame:pro 4 TSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQ-------EDAWKAYDAVGELRYYVG-WRSSSA 75 (629) Q Consensus 4 t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ-------~eAW~~~d~VgELryyvg-Wr~~s~ 75 (629) -.++-+-.|.+.++..+.++.-.+++. ......-+.....+..+++. .+|.+++.--|=.+=++. |..|-| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvV 79 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGG-FGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIV 79 (530) T ss_pred CccceeecCccccchHHHhhhhcccCC-CCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhh Confidence 122222234333332211111111111 11111111112222222222 234444433332222221 333333 Q ss_pred ee-eEEEEEeecCCCCCCCCCCC-CC-cchhHHHHHHHHHh---------cCChhhHHHHHHHHhcceeecCceEEEEEE Q lcl|Aclame:pro 76 SR-VRLIASAIDPDTGLPTGSID-ED-DRVGARVQQIVNQI---------AGGALGQAQLIKRVVEQLTVAGETWVAILF 143 (629) Q Consensus 76 Sr-~rL~aseiD~DtG~ptg~~~-~~-~~~~~r~~~iv~~i---------aGG~lGQaqLlkr~~~~LtVpGE~wI~il~ 143 (629) +- .++.+ ..|-. ..+++ +. ....+++...-+.= +-|.+-=.+|.+.+...+.+-||+.+.+.. T Consensus 80 G~Gi~~~~-~p~~~----~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~ 154 (530) T protein:vir:38 80 GSFFRLSY-RPSWR----YLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATW 154 (530) T ss_pred CCCceeee-ccchh----hcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeee Confidence 22 11111 11100 00111 11 11223333333221 345666677788888888899999998876 Q ss_pred cCCcccccCcccchhhheecHH----------------HhccC--CCeeEEEC----CCCCCC-cc------c-CCCceE Q lcl|Aclame:pro 144 TDKSRLDSNGNPVPEWLALTPE----------------EVRAS--EKKTIIEL----PTGDKH-EF------R-DGLDGM 193 (629) Q Consensus 144 r~~~~~d~~~~~~~eW~~vt~~----------------eI~~~--~~~~~i~l----P~g~~h-~~------~-~~~D~~ 193 (629) ++.+-. . .++ .-..|-.+ -|+-+ |+-+..-+ |.|... .+ + -+.+-| T Consensus 155 ~~~~g~-~--~~~-~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~v 230 (530) T protein:vir:38 155 DSDSTR-L--FRT-QFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSF 230 (530) T ss_pred ccCCCC-c--cce-EEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHe Confidence 643210 0 000 01111122 22221 21122111 333221 11 1 123457 Q ss_pred EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCcee-eecCCccCCcccCCCcCC-CCCccccccCC Q lcl|Aclame:pro 194 FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV-FVPHEMSLPSMNAPVASN-KPGAPAPPILG 271 (629) Q Consensus 194 ~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvl-fvPqe~slP~~~ap~~~~-~pG~~~p~~~~ 271 (629) +||.+|.----.---|..-++|..|+.|- ++..+....-.+.+-+. ||=+...-... ..... ..+.. T Consensus 231 lH~f~~~r~gQ~RGis~lapvl~~l~~l~---~y~dael~~a~i~A~~a~fi~~~~~~~~~--~~~~~~~~~~~------ 299 (530) T protein:vir:38 231 IHVFEPMEDGQTRGANAFYSVMEQMKMLD---TLQNTQLQSAIVKAMYAATIESELDTQSA--MDFILGADNKE------ 299 (530) T ss_pred EeeccccCCCcccCCchHHHHHHHHHHHh---HHHHHHHHHHHHhhhheeeeeccCCcccc--ccccccCCccc------ Confidence 88887652111222344445555555443 34444444444444443 45433321111 00000 00111 Q ss_pred chhHHHHHHHHHHHHhhcccCccccccccc--eeeeechHHhcCceeEEeCCc--hhHHHHHHHHHHHHHHhhhccCchH Q lcl|Aclame:pro 272 TPAVQQLQELLFQVAQTAYDDEDSMAALIP--MFAAAPGELIKNVTHLKFDNQ--VTEVAIKTRNDAIARLAMGLDVSPE 347 (629) Q Consensus 272 ~~a~~~L~~ml~qva~tAi~De~S~AA~vP--Iva~vP~E~i~~ikhL~f~~d--vte~aiktR~daIrrlA~~lD~~pE 347 (629) ....+...... +... ++..--.+-| |+.--|||- |+|-+. -..--..+.+..+|.+|.||.||-| T Consensus 300 --~~~~~~~~~~~--~~~~-~~~~~~~l~pG~i~~L~pGe~------i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye 368 (530) T protein:vir:38 300 --QQSKLTGWLGE--MAAY-YSAAPVRLGGARVPHLLPGDS------LNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYE 368 (530) T ss_pred --ccccccccchh--hhhc-ccccceeccCceeeecCCCCe------eeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHH Confidence 00011111100 0000 0100001112 111223332 333221 2233356778899999999999999 Q ss_pred Hhhc-cccCcchhhHhHHhhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHhcCCC-h-----------hhe--Eeeec Q lcl|Aclame:pro 348 RLLG-LGSNSNHWSAWQIGDEDVRLHILP----PVEMLCEAITNQVLRTVLMREGID-P-----------NAY--VVWHD 408 (629) Q Consensus 348 ~LLG-lg~~~NhwsAw~i~de~v~~hI~P----~~~~i~~alt~~~lr~~Le~eG~d-~-----------~~y--v~w~D 408 (629) .|+| + +++|++|+-+-.-|..+. +.- ++.-+|.-|++.||.-++..--|+ | ..| +.|+= T Consensus 369 ~lt~D~-s~~nYSS~R~~~~e~~r~-~~~~q~~~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~ 446 (530) T protein:vir:38 369 QLSRNY-SQMSYSTARASANESWAY-FMGRRKFVASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIG 446 (530) T ss_pred HHhccc-ccccHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeec Confidence 9999 5 699999998887776655 222 233456678888888776553333 1 224 57999 Q ss_pred CcccccCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCC Q lcl|Aclame:pro 409 ASQLTVDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFP 487 (629) Q Consensus 409 aS~L~~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p 487 (629) ..-..+||-|.-+| +.+++.|..|-+.+.+++|.+-++.+ +|.|.+.-..+.. ++.+| T Consensus 447 p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~~v~--------~q~a~e~~~~~~~-------------Gl~~~ 505 (530) T protein:vir:38 447 SGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIF--------AQQVRESMERRAA-------------GLNPP 505 (530) T ss_pred CCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHc-------------CCCCC Confidence 99999999987776 77999999999999999998866333 2444433221110 11222 Q ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 488 TPTVALPPAEEQDGDEEASGASRREEPDTEDDA 520 (629) Q Consensus 488 ~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~ 520 (629) ..+...+......+++++ ++..+.+ T Consensus 506 ~~~~~~~~~~~~~~~~~~--------~d~~~~a 530 (530) T protein:vir:38 506 AWAAAAFEAGVKKSNEEE--------QDGARAA 530 (530) T ss_pred CCcccccCCCCCCCCCCC--------CCCCCCC Confidence 222111111110110000 0000000 No 99 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=98.51 E-value=1.6e-08 Score=63.30 Aligned_cols=327 Identities=13% Similarity=0.123 Sum_probs=161.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchh--hhhccCCcccchhHHHHHHHh-hcchhhhhhhhhhhceee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAF--RKAMGSSTRTDWQEDAWKAYD-AVGELRYYVGWRSSSASR 77 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~--kk~~~~~~~~~WQ~eAW~~~d-~VgELryyvgWr~~s~Sr 77 (629) |. +.|..+. -+.+.++ ...| ....-.-.+. |=.+..+++. ..|+ |-..-|++ T Consensus 1 m~--------~~~~~~~------~~~~~~~----~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~------~~~pP~~~ 55 (337) T protein:vir:78 1 MT--------KRQQQPA------QAAASSP----RPSVVFSMPEAIDPTA-WMTDYTGVFYNPYGE------YYQPPIDR 55 (337) T ss_pred CC--------CcccCcc------cccccCc----eeEEEecCcccccCcc-hhHhhhhhhhccCcc------eecCCCCH Confidence 22 1122111 0111111 1112 1111111111 3223333221 1121 21111111 Q ss_pred eEEEEEeecCCCCCCCCCCCCCcchhHHHHH-HHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccc Q lcl|Aclame:pro 78 VRLIASAIDPDTGLPTGSIDEDDRVGARVQQ-IVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPV 156 (629) Q Consensus 78 ~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~-iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~ 156 (629) .-| -. .-.-++-+.++.. -.+.+.+.-...-+.+++++.++.+=|.+|+-++--..|+ ++ T Consensus 56 ~~L-----------a~--l~~~~~~h~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~------~~ 116 (337) T protein:vir:78 56 KGL-----------AK--VARANAHHGAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQ------VV 116 (337) T ss_pred HHH-----------HH--HhhcchhhhhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCc------EE Confidence 100 00 0011222222221 1223333444445788999999999999998774322332 11 Q ss_pred hhhheecHHHhccCCCe-eEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhH Q lcl|Aclame:pro 157 PEWLALTPEEVRASEKK-TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSR 235 (629) Q Consensus 157 ~eW~~vt~~eI~~~~~~-~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SR 235 (629) ..+.|....|.+..++ .......|..++|.. .| ||++=+|+|..-..-=||+.+++.++.-=...++.-++.-+.= T Consensus 117 -~L~pl~~~~v~~~~d~~~~~~~~~~~~~~~~~-~e-IiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NG 193 (337) T protein:vir:78 117 -GLHPLSSVYLRRREDGCFVYLQQGKPNLIYRP-DD-VIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNG 193 (337) T ss_pred -EEEEeCCceeEeeeCCeEEEEEcCCceEEECC-cc-EEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcc Confidence 1222333344433222 333344555555543 23 5666677776655666888888876653322222222222222 Q ss_pred hhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCce Q lcl|Aclame:pro 236 LIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVT 315 (629) Q Consensus 236 L~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ik 315 (629) ..-.|||.+|... ......+.|.+.|- +-.+....=.+++..|+..=+++| T Consensus 194 a~p~~il~~~~~~---------------------l~~e~~~~lk~~~~--------~~~G~~n~~~~~v~~~~g~~~Gi~ 244 (337) T protein:vir:78 194 AHMGFIFYATDPN---------------------MDDDTEEEMKEMIA--------NSKGVGNFRSMFVNIPDGKPDGIK 244 (337) T ss_pred CCCceeEEcCCCC---------------------CCHHHHHHHHHHHH--------HhcCcccccceEEEcCCCCcccee Confidence 2333455544311 01223444554442 222233445677888887667777 Q ss_pred eEEeCCchh-HHHHHHHHHHHHHHhhhccCchHHhhccccCcchhh---HhHHhhhhhhhhhhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 316 HLKFDNQVT-EVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWS---AWQIGDEDVRLHILPPVEMLCEAITNQVLRT 391 (629) Q Consensus 316 hL~f~~dvt-e~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nhws---Aw~i~de~v~~hI~P~~~~i~~alt~~~lr~ 391 (629) ...++..-. .--+++|+-....||..+-||| .|+|+=.+.+.|+ +-+....=++..|.|.++.|+++++... T Consensus 245 ~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp-~llGi~~~~~~~~~~n~e~~~~~f~~~~L~P~~~~ie~~~n~~l--- 320 (337) T protein:vir:78 245 LIPVGDIATKDEFAAIKGITAQDVLTAHRYPP-ALAGIIPTNGGGGLGDPEKYDATYARNEVLPLCELVQDAINSAG--- 320 (337) T ss_pred EEEcCCChhHHHHHHHHHHhHHHHHHHhCCCH-HHcccccCCCcCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhc--- Confidence 777764443 3347899999999999999999 8999733333555 7777777888999999999999997532 Q ss_pred HHHhcCCChhheE-eeecCcccc Q lcl|Aclame:pro 392 VLMREGIDPNAYV-VWHDASQLT 413 (629) Q Consensus 392 ~Le~eG~d~~~yv-~w~DaS~L~ 413 (629) +.+.+|+ |=+..+.|. T Consensus 321 ------l~~~~~~~f~~~~~~~~ 337 (337) T protein:vir:78 321 ------LPRALWVTFRETIGAAV 337 (337) T ss_pred ------CChhhceeccccccccC Confidence 3333432 333344444 No 100 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=98.51 E-value=3.8e-09 Score=66.73 Aligned_cols=335 Identities=9% Similarity=0.080 Sum_probs=164.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhcc-----CCcccchhHHHHHHHh-hcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMG-----SSTRTDWQEDAWKAYD-AVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~-----~~~~~~WQ~eAW~~~d-~VgELryyvgWr~~s 74 (629) |-... ..++++.-+.+...| |++ ...+ .|=.++|+++- -.|+ |-..- T Consensus 1 ~~~~~------------------~~~~~~~~~~~~~~~--~~~~~p~~~~~~-~~~~~~~~~~~~~~~~------~~epp 53 (348) T protein:vir:26 1 MTEQL------------------IHSHTTDGTESKSVY--SFDPNPEPVDTN-SWMTRYCELFYNDFDD------YWEPP 53 (348) T ss_pred CCccc------------------cchhhccccCCceEE--EecCCCeeecCc-chHHHHHHHHhcCCCc------cccCC Confidence 21110 001111111111222 111 1112 24556666542 1221 21111 Q ss_pred eee---eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCccccc Q lcl|Aclame:pro 75 ASR---VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDS 151 (629) Q Consensus 75 ~Sr---~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~ 151 (629) +++ ++|+-+ . .-+--+...+..-++..+-.++.--.+-+++++.++.+=|.+|+.++--..|+. T Consensus 54 ~~~~~La~l~~~--n---------~~h~~~i~~k~N~l~~~~~Pn~~~t~~~f~~~~~d~ll~Gnay~~~~rn~~G~~-- 120 (348) T protein:vir:26 54 ISLKGLAEIANA--N---------GYHGSLLKARANYVAGRFMNGGGLPMYKMNSACWDYFGLGMSAFVKIRSYLKNV-- 120 (348) T ss_pred CCHHHHHHHHhh--h---------hhhhhhHhhhhhHHhhcccCCCCCCHHHHHHHHHHHHhcCCeEEEEEEcCCCcE-- Confidence 111 111000 0 000000111122222222233322233457788888899999988762223321 Q ss_pred CcccchhhheecHHHhccCCCe-eEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHH Q lcl|Aclame:pro 152 NGNPVPEWLALTPEEVRASEKK-TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIAN 230 (629) Q Consensus 152 ~~~~~~eW~~vt~~eI~~~~~~-~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~n 230 (629) + +...+....+....++ .-.....|..++|.. +-||++=+|+|.....-=||..+++.++.--.-.++.-++ T Consensus 121 ----~-~L~~l~~~~v~~~~d~~~~~~~~~g~~~~f~~--~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~ 193 (348) T protein:vir:26 121 ----I-ALEPLPMVHMRKRKNGDFVQLLRNNEQKVFKA--KDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRR 193 (348) T ss_pred ----E-EEEEecCceeEeeecCcEEEEEecCeEEEEcC--ccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHH Confidence 1 1222223334433222 233345566666643 3356666778877777788998888765422222222111 Q ss_pred HHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHH Q lcl|Aclame:pro 231 ASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGEL 310 (629) Q Consensus 231 aa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~ 310 (629) --+.=....|||.++... ......+.|.+.|-+ + + ..-..=.+++..|+.. T Consensus 194 ~f~NGa~pg~Il~~~~~~---------------------ls~e~~~~lk~~~~~----~-~---G~~n~~~~~vl~~~g~ 244 (348) T protein:vir:26 194 YYLNGAHMGFIFYATDPN---------------------LSEADEKALKEKIAS----S-K---GIGNFRSMFVNIPNGK 244 (348) T ss_pred HHhccCCCceEEEecCCC---------------------CCHHHHHHHHHHHHH----h-c---CcccccceeEEcCCCC Confidence 112222334555554311 112245556655542 1 1 1122344566777755 Q ss_pred hcCceeEEeCCc-hhHHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 311 IKNVTHLKFDNQ-VTEVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQ 387 (629) Q Consensus 311 i~~ikhL~f~~d-vte~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~ 387 (629) =+.+|-..++.. .+.--+++|+-....||..+-||| .|+|+. +.+|..++-+....=++..|.|.++.|+++|++. T Consensus 245 ~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp-~llGi~~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~ 323 (348) T protein:vir:26 245 EKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPA-GMGGMLPQQGANVPDPLKVSQVYDFYEVIPVCKRFMDAVNND 323 (348) T ss_pred ccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCH-HHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 566666665422 233468899999999999999999 788973 3367778888888889999999999999999975 Q ss_pred HHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCC Q lcl|Aclame:pro 388 VLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAI 431 (629) Q Consensus 388 ~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~i 431 (629) ++ +. ..+-|+||.+... |+++. .+| T Consensus 324 l~--------~~-~~~~~~fdl~~~~---e~~~~-------~a~ 348 (348) T protein:vir:26 324 PE--------IP-DNLKLKFNLNPGV---ESANG-------SAV 348 (348) T ss_pred hC--------CC-CccEEEEecCccc---ccchh-------hcC Confidence 42 22 4456778865432 22222 222 No 101 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=98.44 E-value=4e-08 Score=61.16 Aligned_cols=338 Identities=14% Similarity=0.087 Sum_probs=167.2 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCccc-chhh--hhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPG-KAFR--KAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASR 77 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~-~~~k--k~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr 77 (629) |.- | +++....+++++.+.+...++-+.+. ..|. .....-.+. | ++|-+ |+-|..+|..--+++ T Consensus 1 m~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~-~------~~~y~-~~~~~~~~~~pp~~~ 67 (350) T protein:vir:11 1 MSK---R--RSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGR-G------ILDYL-ECWPNGRWYEPPLSM 67 (350) T ss_pred CCc---c--ccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcc-h------hhHHH-HHhhcCccccCCCCH Confidence 321 1 11111222222233333222222211 1221 000000111 1 11111 122222343333333 Q ss_pred ---eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCCh-hhHHHHHHHHhcceeecCceEEEEEEcCCcccccCc Q lcl|Aclame:pro 78 ---VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGA-LGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNG 153 (629) Q Consensus 78 ---~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~-lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~ 153 (629) +||+ +..+.-+ -+...+..-++...-.++ +-+.++ ++++.++.+=|.+|+.++--..|+ T Consensus 68 ~~la~~~--~~~~~h~---------~~l~~k~n~l~~~~~Pn~~~t~~~f-~~~v~d~ll~Gnay~~~~rn~~G~----- 130 (350) T protein:vir:11 68 EGLAKSV--GSSVYLQ---------SGLKFKRNMLAKTFIPHRLLSRATF-EQFSLDWLTFGSAYLEQPRSRLGT----- 130 (350) T ss_pred HHHHHHH--hhhhhhc---------cchhhhhhhhhhcccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEEcCCCC----- Confidence 1221 0011100 001111111222222233 334444 667788888899999886322232 Q ss_pred ccchhhheecHHHhccC--CCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 154 NPVPEWLALTPEEVRAS--EKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 154 ~~~~eW~~vt~~eI~~~--~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) ++.=|. |...-|... ++..-...+.|..++|.. .| ||++=+|+|.....--||..+++.++.--.-.++.-++. T Consensus 131 -~~~L~~-l~~~~vr~~~~~~~~~~~~~~~~~~~~~~-~e-Vihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~ 206 (350) T protein:vir:11 131 -RMPLQA-PLAKYMRRGTDLETFYQVRSWKDEHEFEK-GS-VIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKY 206 (350) T ss_pred -EEEEEE-eCCceeEeeecCCeEEEEeeCCeEEEECc-cc-EEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 222222 222333332 333344456677777743 23 555556777766777889999888776544444433333 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHh Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELI 311 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i 311 (629) -+.-..-.|||.+|... ......+.|.+.|-+ -.+....=.+++..|+..= T Consensus 207 f~NGa~~~gil~~~~~~---------------------ls~e~~~~l~~~~~~--------~~G~~N~~~~~v~~~~g~~ 257 (350) T protein:vir:11 207 YNNGSHAGFILYMTDAA---------------------QNEEDIDALRTALKT--------AKGPGNFRNLFVYAPNGKK 257 (350) T ss_pred HhccCCCceEEEecCCC---------------------CCHHHHHHHHHHHHH--------hcCccccCceeeecCCCCc Confidence 33333334566665311 112244556665532 1122333345667776555 Q ss_pred cCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHHHH Q lcl|Aclame:pro 312 KNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQV 388 (629) Q Consensus 312 ~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~~~ 388 (629) +.+|...++..-.+. -+++|+.....||..+-||| .|||+- +.+|..++.+....=++..|.|.++.|++ |.+ + T Consensus 258 ~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp-~llGi~~~~t~~~sn~e~~~~~f~~~~L~P~~~~ie~-ln~-~ 334 (350) T protein:vir:11 258 EGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYP-QLMGVVPQNAGGFGSISDAAAVWASLELAPMQTRLQQ-VNE-M 334 (350) T ss_pred cceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHh-h Confidence 667777775444443 48899999999999999999 799973 23567788888888899999999999986 544 3 Q ss_pred HHHHHHhcCCChhheEeeecCccc Q lcl|Aclame:pro 389 LRTVLMREGIDPNAYVVWHDASQL 412 (629) Q Consensus 389 lr~~Le~eG~d~~~yv~w~DaS~L 412 (629) |- .+-+... -|+.++| T Consensus 335 l~----~~~~~F~----~~~~~~l 350 (350) T protein:vir:11 335 IG----EEVVRFA----QFDAPGL 350 (350) T ss_pred cC----ccccccC----cccccCC Confidence 31 1222223 4555888 No 102 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=98.43 E-value=7.2e-09 Score=65.23 Aligned_cols=317 Identities=9% Similarity=0.084 Sum_probs=159.9 Q ss_pred EEcCCCCCCCcccceeeecccccCcccchhhhh-----ccCCcccchhHHHHHHHhh------cchhhhhhhhhhhceee Q lcl|Aclame:pro 9 VRRPKSEPVSTRQRALVAASQPVENPGKAFRKA-----MGSSTRTDWQEDAWKAYDA------VGELRYYVGWRSSSASR 77 (629) Q Consensus 9 vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~-----~~~~~~~~WQ~eAW~~~d~------VgELryyvgWr~~s~Sr 77 (629) .++ +-..+ .+-..+++.+. ...|... ..-.-..-|+...+++|+- .-+| .++|..-. T Consensus 1 ~~~-~~~~~--~~~~~~~~~~~----~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l-----~~~~~~h~ 68 (345) T protein:vir:37 1 MKT-NVKTD--NKKGIVIAPIN----DRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKL-----PHQNAQHG 68 (345) T ss_pred CCC-Ccccc--chhhcccCcce----eEEeecCCcccccchhhhhhhhcCCccccCCCCCHHHHHHH-----hhcccccc Confidence 111 11111 00011111111 1112110 0001111144444444540 0011 01111110 Q ss_pred eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCCh-hhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccc Q lcl|Aclame:pro 78 VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGA-LGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPV 156 (629) Q Consensus 78 ~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~-lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~ 156 (629) -=|++ +..-++..+-.++ +-..++ ++++.++.+=|.+|+.++--..|+ +. T Consensus 69 ~~i~~----------------------k~n~l~~~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~~~rn~~G~------~~ 119 (345) T protein:vir:37 69 GILHS----------------------RANMVSSLYEGGKALSRMDM-RALCLNLIQFGDVGLLKVRNGFGQ------VV 119 (345) T ss_pred cceee----------------------echHHHhhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEEcCCCc------EE Confidence 00110 1111111122222 334444 677788888999998875322332 22 Q ss_pred hhhheecHHHhc--cCCCeeE-E----ECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHH Q lcl|Aclame:pro 157 PEWLALTPEEVR--ASEKKTI-I----ELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIA 229 (629) Q Consensus 157 ~eW~~vt~~eI~--~~~~~~~-i----~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~ 229 (629) .=|. |....|. ..++... + ....|..++|.. +-||++=+|+|..-..--||..+++.++.-=.-.++. T Consensus 120 ~L~p-l~~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~~--~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~-- 194 (345) T protein:vir:37 120 RLVP-LSSLYLRVRKDGGYSYLMKKSLYDTAQEIYRYDA--KDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVF-- 194 (345) T ss_pred EEEE-EcCceeEEEEeCCeeEEEEEeEecCCceEEEEcc--ccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHH-- Confidence 1122 2222222 2222211 1 122344444432 2366666677777667789998888765432222222 Q ss_pred HHHHhHhhhC-----ceeeecCC-ccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCcccccccccee Q lcl|Aclame:pro 230 NASKSRLIGN-----GVVFVPHE-MSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMF 303 (629) Q Consensus 230 naa~SRL~gn-----GvlfvPqe-~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIv 303 (629) +.+...| |||.+|.. ++ ....+.|.+-| ++-......=.++ T Consensus 195 ---~~~~f~NG~~p~~Il~~~d~~l~----------------------~e~~~~lk~~~--------~~~~g~~n~~~~~ 241 (345) T protein:vir:37 195 ---RRRYFSNGAHMGFILYSTDPDLT----------------------EEMEEEIARKI--------SESKGVGNFRSMF 241 (345) T ss_pred ---HHHHHhccCCcceEEEecCCCCC----------------------HHHHHHHHHHH--------HHhcCcccccceE Confidence 2334444 55655421 11 12334444433 3323334555677 Q ss_pred eeechHHhcCceeEEeCCch-hHHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHHH Q lcl|Aclame:pro 304 AAAPGELIKNVTHLKFDNQV-TEVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEML 380 (629) Q Consensus 304 a~vP~E~i~~ikhL~f~~dv-te~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~i 380 (629) +..|+..=+++|...++..- +.--+++|+-.+..||..+.||| .|+|+. +.++..++.+....-++..|.|.++.| T Consensus 242 i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp-~llGi~~~~~~~~~~~e~~~~~f~~~~l~P~~~~i 320 (345) T protein:vir:37 242 VNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPA-GLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEII 320 (345) T ss_pred EEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhCccCCCCCCcccHHHHHHHHHHHHHHHHHHHH Confidence 88888666777777765432 33348889999999999999999 788983 234556688888889999999999999 Q ss_pred HHHHHHHHHHHHHHhcCCChhheEeeecCccccc Q lcl|Aclame:pro 381 CEAITNQVLRTVLMREGIDPNAYVVWHDASQLTV 414 (629) Q Consensus 381 ~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~ 414 (629) +++|++. ++ -+..+++.||.-+|.. T Consensus 321 e~~ln~~-----~~----~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 321 AETINQD-----PE----IKNLLKIKFREQNFAK 345 (345) T ss_pred HHHhhhh-----cc----CCCcceEEecchhhcC Confidence 9999863 21 1356889999999988 No 103 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=98.41 E-value=3.1e-08 Score=61.74 Aligned_cols=353 Identities=14% Similarity=0.098 Sum_probs=172.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccC--cccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceee- Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVE--NPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASR- 77 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~--~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr- 77 (629) |.-..-|.-++ ..++.+ ++.+++..+.. ..... -..+.++....|.+..| ++|-+ |+-+..+|-.+-|+. T Consensus 1 m~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~fg~p~~~~~~~~-~~~~~-~~~~~~~~~~~pi~~~ 73 (368) T protein:vir:79 1 MSRNKTRRAAR--AASAHV--RTANTDAPTEHHTDRAAQ-AEVFSFGDPVEVLDRRE-LLDYV-ECMRMGQWYEPPMPWD 73 (368) T ss_pred CCccccccchh--ccCccc--ccccccCcchhhccccCc-eEEEEcCCceeecchhh-HHHHH-HHHhccchhccCcCHH Confidence 54332222221 111111 22222111110 00000 01122233333665554 34423 332333366555554 Q ss_pred --eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCccc Q lcl|Aclame:pro 78 --VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNP 155 (629) Q Consensus 78 --~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~ 155 (629) ++|+-+ .+..|.+- ...++ +..... .-..-+...++ ++++.++.+-|.+|+.++--..|.. T Consensus 74 ~la~~~~~--~~~h~~~~-~~~~n------~l~l~~-~Pn~~~t~~~f-~~l~~d~ll~Gnay~~~~r~~~G~~------ 136 (368) T protein:vir:79 74 GLARSFRA--AAHHSSAV-YVKRN------ILVSTF-IPHPLLSRATF-ERLVLDWQVFGNAYLERRENVLGGT------ 136 (368) T ss_pred HHHHHHhh--ccccchhh-hhhcc------hhhhhc-CCCcCCCHHHH-HHHHHHHhhcCCeEEEEEEcCCCCE------ Confidence 223211 12211111 00110 111111 22333555665 6788999999999998864333321 Q ss_pred chhhheecHHHhcc--CCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHH Q lcl|Aclame:pro 156 VPEWLALTPEEVRA--SEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) Q Consensus 156 ~~eW~~vt~~eI~~--~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~ 233 (629) . +.+.|....|.. .++......+.|..++|.. +-||++=+|+|..-..--||..+++.++.--.-.++. + T Consensus 137 ~-~L~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~-----~ 208 (368) T protein:vir:79 137 I-RLDTPLAKYVRRGLDLNTYFFVQNWQQPYTFAA--GSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLF-----R 208 (368) T ss_pred E-EEEEeCcccceeeccCCEEEEEecCCeEEEEcc--ccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHH-----H Confidence 1 233333334433 3343444555666655543 2367776888888778889999988776543333322 3 Q ss_pred hHhhhCc-----eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeech Q lcl|Aclame:pro 234 SRLIGNG-----VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPG 308 (629) Q Consensus 234 SRL~gnG-----vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~ 308 (629) .|+..|| ||.+|... ......+.|.+.|-+ .+ +.-.+--++|+ .|+ T Consensus 209 ~~~~~NGa~~~gil~~~~~~---------------------l~~e~~~~lk~~~~~-~~------G~~N~g~~~vl-~~~ 259 (368) T protein:vir:79 209 RRYYKNGSHAGFILYMTDAA---------------------QKQEDVDTLREAMKS-AK------GPGNFRNLFMY-APN 259 (368) T ss_pred HHHHhccCCCceEEEeCCCC---------------------CCHHHHHHHHHHHHH-hc------CCcccCceeEe-cCC Confidence 4555554 55554211 112244556665532 11 11112223333 455 Q ss_pred HHhcCceeEEeCCc-hhHHHHHHHHHHHHHHhhhccCchHHhhcccc--CcchhhHhHHhhhhhhhhhhhHHHHHHHHHH Q lcl|Aclame:pro 309 ELIKNVTHLKFDNQ-VTEVAIKTRNDAIARLAMGLDVSPERLLGLGS--NSNHWSAWQIGDEDVRLHILPPVEMLCEAIT 385 (629) Q Consensus 309 E~i~~ikhL~f~~d-vte~aiktR~daIrrlA~~lD~~pE~LLGlg~--~~NhwsAw~i~de~v~~hI~P~~~~i~~alt 385 (629) ..-+++|...++.. .+.--+++|+.....||..+.||| .|||+.. .+|..+.-+....=++..|.|.++.|++ |+ T Consensus 260 g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp-~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie~-ln 337 (368) T protein:vir:79 260 GKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPP-QLMGIIPNNTGGFGDVEKAAMVFARNEVKPLQDRLLA-IN 337 (368) T ss_pred CCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCH-HHccccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HH Confidence 44455555555433 223347899999999999999999 8889832 2456788888888889999999999974 44 Q ss_pred HHHHHHHHHhcCCChhheEeeecCcccccCCCchHHHHHHHHcCCCCH Q lcl|Aclame:pro 386 NQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKTDEARDAFDRGAITA 433 (629) Q Consensus 386 ~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t~eA~~~~~~G~it~ 433 (629) . + |. .+++-||...|... |....|..+.+ |+ T Consensus 338 ~-~----l~-------~e~~rF~~~~l~~~-D~~a~a~~~~r----sa 368 (368) T protein:vir:79 338 D-W----IG-------DEVVRFAPYALGGH-DQPAAAPGGQR----SA 368 (368) T ss_pred h-c----cC-------cceeeechhHhhcc-cccccCCcccc----cC Confidence 3 2 21 13455665555433 22222211111 11 No 104 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=98.40 E-value=5.2e-08 Score=60.54 Aligned_cols=321 Identities=10% Similarity=0.106 Sum_probs=156.9 Q ss_pred EEcCCCCCCCcccceeeecccccCcccchhhhh-----ccCCcccchhHHHHHHHhhcchhhhhhhhhhhceee---eEE Q lcl|Aclame:pro 9 VRRPKSEPVSTRQRALVAASQPVENPGKAFRKA-----MGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASR---VRL 80 (629) Q Consensus 9 vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~-----~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr---~rL 80 (629) .++=|..+. ++.+++ +++. ...|... ....-..-|+...+++|+ -| +++ ++| T Consensus 1 ~~~~~~~~~----~~~~~~-~~~~--~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e-pp------------~~~~~la~~ 60 (345) T protein:vir:37 1 MKTNVKTDN----KKGIVI-APIN--DRTFSLSEITASPALDYVGIGFDENYNCYL-PP------------VNRHALAKL 60 (345) T ss_pred CCccccccc----hhhhcC-CCce--EEEeecCCcccchhhcccceeeecCCcccc-CC------------CCHHHHHHH Confidence 111111110 111110 1100 0111110 000111112222222332 00 000 000 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhc-CChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIA-GGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEW 159 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~ia-GG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW 159 (629) + + ...-|-.+..-+..-++...- .+-+-..++ ++++.++.+=|.+|+.++--..|+ .+.=| T Consensus 61 ~--~---------~~~~h~~~i~~k~n~l~~~~~Pn~~~t~~~f-~~~v~d~ll~Gnay~~i~rn~~G~------~~~L~ 122 (345) T protein:vir:37 61 P--H---------QNAQHGGILHSRANMVSATYEGGKALSKMEM-RALCLNLIQFGDVGLLKVRNGFGQ------VVRLV 122 (345) T ss_pred h--h---------cchhhcchhhhhhhHHhhccCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCC------EEEEE Confidence 0 0 000000001111112222211 222334444 677778888899999887433332 22112 Q ss_pred heecHHHhccC--CCeeEEE----CC-CCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHH Q lcl|Aclame:pro 160 LALTPEEVRAS--EKKTIIE----LP-TGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANAS 232 (629) Q Consensus 160 ~~vt~~eI~~~--~~~~~i~----lP-~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa 232 (629) . +....|.+. ++..... .. .|..++|. .+-||++=+|+|..-..--||..+++.++. ++.. ...- T Consensus 123 p-l~~~~vr~~~d~~~~~~~~~~~~~~~g~~~~~~--~~eViHir~~~~~~~~~Gl~~~~~a~~si~----l~~~-a~~~ 194 (345) T protein:vir:37 123 P-LSSLYLRVHKDGGYSYLMKKSLYDTAQEIYRYD--AKDIIFIKLYDPMQQVYGSPDYVGGIQSAL----LNSD-ATVF 194 (345) T ss_pred E-ecCceeEEeecCCeeEEEeeeeeccCceEEEEc--cccEEEEcCCCCCCCcccchHHHHHHHHHH----HHHH-HHHH Confidence 2 222333322 2211111 11 13334443 223566656777666666688888777553 2222 1222 Q ss_pred HhHhhhCc-----eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeec Q lcl|Aclame:pro 233 KSRLIGNG-----VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAP 307 (629) Q Consensus 233 ~SRL~gnG-----vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP 307 (629) +.+...|| ||.++... ......+.|.+.|. +...-.++-++++..| T Consensus 195 ~~~~f~NGa~~~~Il~~t~~~---------------------l~~e~~~~lk~~~~--------~~~g~~n~~~~~i~~~ 245 (345) T protein:vir:37 195 RRRYFSNGAHMGFILYSTDPD---------------------LTEEMEEEIARKIS--------ESKGVGNFRSMFVNIA 245 (345) T ss_pred HHHHHhccCCcceEEEeCCCC---------------------CCHHHHHHHHHHHH--------HhcCccccCceeEecC Confidence 34555555 54444210 11123444544443 2222345668888889 Q ss_pred hHHhcCceeEEeCCchh-HHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHHHHHHH Q lcl|Aclame:pro 308 GELIKNVTHLKFDNQVT-EVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEMLCEAI 384 (629) Q Consensus 308 ~E~i~~ikhL~f~~dvt-e~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~i~~al 384 (629) +..-+.+|...++..-. .--+++|+..+..||..+-||| .|+|+- +.++..++-+....=++..|.|.++.|.++| T Consensus 246 ~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp-~liGi~~~~t~~~s~~e~~~~~f~~~~l~P~~~~ie~~l 324 (345) T protein:vir:37 246 GGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPA-GLSGIIPTNTGGLGDPLKYREVYHYDEVMPLQEIIAETI 324 (345) T ss_pred CCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHh Confidence 87666777777755433 3357889999999999999999 888973 2345566777777778888999999999999 Q ss_pred HHHHHHHHHHhcCCChhheEeeecCccccc Q lcl|Aclame:pro 385 TNQVLRTVLMREGIDPNAYVVWHDASQLTV 414 (629) Q Consensus 385 t~~~lr~~Le~eG~d~~~yv~w~DaS~L~~ 414 (629) ++. ++ -+..|++.||..+|.. T Consensus 325 n~~-----~e----~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 325 NQD-----PE----IKNLLKIKFREQNFAK 345 (345) T ss_pred hhh-----hc----cCCcceEEECchhhcC Confidence 862 21 1247999999999988 No 105 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=98.38 E-value=5.7e-08 Score=60.31 Aligned_cols=323 Identities=15% Similarity=0.184 Sum_probs=163.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhh----------hhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYY----------VGW 70 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryy----------vgW 70 (629) |. +| |..++++.....++.++.+.. -.|-.-.-.-.+ .|-.+..+++. .|+ || =-. T Consensus 1 ~~-------~~-~~~~~~~~~~~~~~~~~~~~~--~~f~~p~~v~~~-~~~~~~~~~~~-~~~--~~~pp~~~~~la~~~ 66 (344) T protein:vir:20 1 MS-------KK-KGKTPQPAAKTMTASGPKMEA--FTFGEPVPVLDR-RDILDYVECIS-NGR--WYEPPVSFTGLAKSL 66 (344) T ss_pred CC-------cc-cCCCCcchhhhhhccCCceEE--EEcCCceEecCc-chhhhhhhhhh-cCc--eecCCCCHHHHHHHH Confidence 21 11 222222211122222221110 011000000111 12222222221 232 22 111 Q ss_pred hhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhc-CChhhHHHHHHHHhcceeecCceEEEEEEcCCccc Q lcl|Aclame:pro 71 RSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIA-GGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRL 149 (629) Q Consensus 71 r~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~ia-GG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~ 149 (629) ++|....-=||+ +..-++..+- ..-+-+.++ ++++.++.+=|.+|+-++-...|+ T Consensus 67 ~a~~~h~~~i~~----------------------k~n~l~~~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~rn~~G~- 122 (344) T protein:vir:20 67 RAAVHHSSPIYV----------------------KRNILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGK- 122 (344) T ss_pred hhhhhhCcccee----------------------hhhhHHHhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCc- Confidence 222211111111 1111111111 222334455 788889999999999875323332 Q ss_pred ccCcccchhhheecHHHhc--cCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHH Q lcl|Aclame:pro 150 DSNGNPVPEWLALTPEEVR--ASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKT 227 (629) Q Consensus 150 d~~~~~~~eW~~vt~~eI~--~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~ 227 (629) ++.=|.. ...-|. ..++..-.....|..++|.. +-||++=+|+|..-..--||..++++++.--.-.++ T Consensus 123 -----~~~L~pl-~~~~vr~~~~~~~~~~~~~~~~~~~~~~--~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~- 193 (344) T protein:vir:20 123 -----VIRLETS-PAKYTRRGVEEDVYWWVPSFNEPTAFAP--GSVFHLLEPDINQELYGLPEYLSALNSAWLNESATL- 193 (344) T ss_pred -----EEEEEEc-CCceeEeeecCCEEEEEccCCeEEEEcC--ccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHH- Confidence 1211222 122222 22333333445565555553 336667688887767778898888877653222222 Q ss_pred HHHHHHhHhhhCc-----eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccce Q lcl|Aclame:pro 228 IANASKSRLIGNG-----VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPM 302 (629) Q Consensus 228 I~naa~SRL~gnG-----vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPI 302 (629) -+.|...|| ||.+|... ......+.|.+.|. +-...-+.=++ T Consensus 194 ----~~~~~f~NGa~p~~Il~~~d~~---------------------l~~e~~~~ik~~~~--------~~~g~~n~r~l 240 (344) T protein:vir:20 194 ----FRRKYYENGAHAGYIMYVTDAV---------------------QDRNDIEMLRENMV--------KSKGRNNFKNL 240 (344) T ss_pred ----HHHHHHhccCCCceEEEecCcC---------------------CCHHHHHHHHHHHH--------HhcCCCCccce Confidence 334454444 55554210 11223444444443 22223457789 Q ss_pred eeeechHHhcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHH Q lcl|Aclame:pro 303 FAAAPGELIKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEM 379 (629) Q Consensus 303 va~vP~E~i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~ 379 (629) |+..|+.--+.+|...++..-.+- -+++|+-....||..+.||| .|+|+- +.+|..++.+....=++..|.|.++. T Consensus 241 ~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp-~llGi~~~~t~~~~n~e~~~~~f~~~~l~P~~~~ 319 (344) T protein:vir:20 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPF-QLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR 319 (344) T ss_pred EEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCH-HHhccCCCCCCccccHHHHHHHHHHHHHHHHHHH Confidence 999999887888888886444433 48999999999999999999 788973 33557778888888889999999999 Q ss_pred HHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCC Q lcl|Aclame:pro 380 LCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) Q Consensus 380 i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd 417 (629) |.+ |++ + | |... +-|+-..|..+-+ T Consensus 320 ~e~-in~-~----l---g~~~----i~F~~~~l~~~d~ 344 (344) T protein:vir:20 320 IRE-ING-W----L---GQEV----IRFKNYSLDTDND 344 (344) T ss_pred HHH-HHH-h----c---CCcc----cccCccccccCCC Confidence 974 443 2 3 4332 3344456666633 No 106 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.36 E-value=1.1e-06 Score=53.26 Aligned_cols=450 Identities=14% Similarity=0.114 Sum_probs=193.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchh------hhhccCCcccchh-------HHHHHHHhhcchhhhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAF------RKAMGSSTRTDWQ-------EDAWKAYDAVGELRYY 67 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~------kk~~~~~~~~~WQ-------~eAW~~~d~VgELryy 67 (629) |.-.....++.|....+ ++.+. .+...+..+ |.....+...++. .+|.+++.--|=.+=+ T Consensus 1 ~~~p~~~~~~~~~~~~~---~~~~~----~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~a 73 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTS---LREYA----GYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANA 73 (533) T ss_pred CCCchhhhhhcccccch---HHHHH----hhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHH Confidence 33332222222222111 11111 122111111 1112222222233 2334444333322222 Q ss_pred hh-hhhhceeeeEEEEEeecCCCCCCC---CCCCCCcchhHHHHHHHHHh-------------cCChhhHHHHHHHHhcc Q lcl|Aclame:pro 68 VG-WRSSSASRVRLIASAIDPDTGLPT---GSIDEDDRVGARVQQIVNQI-------------AGGALGQAQLIKRVVEQ 130 (629) Q Consensus 68 vg-Wr~~s~Sr~rL~aseiD~DtG~pt---g~~~~~~~~~~r~~~iv~~i-------------aGG~lGQaqLlkr~~~~ 130 (629) ++ |..|-|+- -|-+. -.|. .++.++ ....+++.++.. +.|.+-=.+|.+.+... T Consensus 74 v~~~~~nvVG~------Gi~~~-~~p~~~~lg~~~~--~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~ 144 (533) T protein:vir:34 74 IQLHQDHIVGS------FFRLS-HRPSWRYLGIGEE--EARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAM 144 (533) T ss_pred HHHHHHHhhCC------Cceee-eccchhhcCCChh--HHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHH Confidence 22 33333221 12211 1111 011111 112344444333 57787778888888889 Q ss_pred eeecCceEEEEEEcCCcccccCcccchhhheecHHHhcc----------------C--CCeeEEEC----CCCC-CCc-- Q lcl|Aclame:pro 131 LTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRA----------------S--EKKTIIEL----PTGD-KHE-- 185 (629) Q Consensus 131 LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~----------------~--~~~~~i~l----P~g~-~h~-- 185 (629) +.+-||+.+.+..++.+... .+ . .-..+..+.|.. + |.-+..-+ |.|+ ... T Consensus 145 ~~~dGE~f~~~~~~~~~g~~-~~--~-~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~ 220 (533) T protein:vir:34 145 HAFNGELFVQATWDTSSSRL-FR--T-QFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWT 220 (533) T ss_pred HHhCCceEEEeeeccCCCCc-cc--e-EEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccc Confidence 99999999998776542100 00 0 011222222221 1 11111111 2222 111 Q ss_pred ----cc-CCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCcee-eecCCccCCcccCCCcC Q lcl|Aclame:pro 186 ----FR-DGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV-FVPHEMSLPSMNAPVAS 259 (629) Q Consensus 186 ----~~-~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvl-fvPqe~slP~~~ap~~~ 259 (629) ++ -+..-|+|+++|.----.---|..-++|..|+.|- ++..+......+.+-+. ||=++ .|........ T Consensus 221 ~~~~~~~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~---~y~dael~~a~i~A~~a~fi~~~--~~~~~~~~~~ 295 (533) T protein:vir:34 221 WIPRELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLD---TLQNTQLQSAIVKAMYAATIESE--LDTQSAMDFI 295 (533) T ss_pred eeeeeeccChhHeeeeccccCCCcccCCchHHHHHHHHHHHH---HHHHHHHHHHHHhhhheeeeecC--CCcccccccc Confidence 11 12334777776652111122345555555555544 44444444444444433 33222 1111100000 Q ss_pred CCCCccccccCCchhHHHHHHHHHHHHhhcccC-ccccccccceeeeechHHhcCceeEEeCC--chhHHHHHHHHHHHH Q lcl|Aclame:pro 260 NKPGAPAPPILGTPAVQQLQELLFQVAQTAYDD-EDSMAALIPMFAAAPGELIKNVTHLKFDN--QVTEVAIKTRNDAIA 336 (629) Q Consensus 260 ~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~D-e~S~AA~vPIva~vP~E~i~~ikhL~f~~--dvte~aiktR~daIr 336 (629) +... ...+.+.....+.... ..... +-++..- -|+---|||- |+|-+ .-..--..+.+..+| T Consensus 296 ---~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~l~pG-~i~~L~pGe~------i~~~~~~~p~~~~~~f~~~~lr 360 (533) T protein:vir:34 296 ---LGAN-SQEQRERLTGWIGEIA----AYYAAAPVRLGGA-KVPHLMPGDS------LNLQTAQDTDNGYSVFEQSLLR 360 (533) T ss_pred ---cCCC-cccccccccccchhhh----hccCcceeeccCc-eeeecCCCCe------eeecCCCCCCCCHHHHHHHHHH Confidence 0000 0000000000111100 00000 0011110 0112233332 23322 122333567788899 Q ss_pred HHhhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHhcCCC------------h Q lcl|Aclame:pro 337 RLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILP----PVEMLCEAITNQVLRTVLMREGID------------P 400 (629) Q Consensus 337 rlA~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P----~~~~i~~alt~~~lr~~Le~eG~d------------~ 400 (629) .+|.||.||-|.|.|==|++|++|+-+-.-|..+. +.- ++.-+|.-|++.||.-++..--++ + T Consensus 361 ~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~-~~~~q~~~~~~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~ 439 (533) T protein:vir:34 361 YIAAGLGVSYEQLSRNYAQMSYSTARASANESWAY-FMGRRKFVASRQASQMFLCWLEEAIVRRVVTLPSKARFSFQEAR 439 (533) T ss_pred HHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccCCCchhhH Confidence 99999999999999943689999998777665543 111 344578888888888777553333 1 Q ss_pred hhe--EeeecCcccccCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhh Q lcl|Aclame:pro 401 NAY--VVWHDASQLTVDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVL 477 (629) Q Consensus 401 ~~y--v~w~DaS~L~~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pl 477 (629) ..| +-|.=..-..+||-|.-+| +.+++.|..|-+.+-+++|.+-++.+ +|.|.+.-..+-. T Consensus 440 ~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~ev~--------~q~a~e~~~~~~~-------- 503 (533) T protein:vir:34 440 SAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEIF--------AQQVRETMERRAA-------- 503 (533) T ss_pred HhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHH--------HHHHHHHHHHHhc-------- Confidence 234 5788899999999998777 77999999999999999998866333 2444433221111 Q ss_pred cccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCC Q lcl|Aclame:pro 478 IPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQA 528 (629) Q Consensus 478 l~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a 528 (629) ++.++..+..... ++.. +.+++++ + ++..+ T Consensus 504 -----gl~~~~~~~~~~~----------s~~~----~~~~~~~-~-~~~~~ 533 (533) T protein:vir:34 504 -----GLKPPAWAAAAFE----------SGLR----QSTEEEK-S-DSRAA 533 (533) T ss_pred -----CCCCCCCCCcCcc----------CCCC----CCCCCCc-c-cCCCC Confidence 1112211111100 0000 1111000 0 00111 No 107 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=98.32 E-value=4.6e-08 Score=60.80 Aligned_cols=320 Identities=15% Similarity=0.220 Sum_probs=161.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCC---cccchhHHHHHHHhhcchhhhh---hhh---- Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSS---TRTDWQEDAWKAYDAVGELRYY---VGW---- 70 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~---~~~~WQ~eAW~~~d~VgELryy---vgW---- 70 (629) |.- | |..+..+....-++..+.+ ..| +++.. ....|.-+..+++. -| +|| +.. T Consensus 1 m~~-------~-~~~~~~~~~~~~~~~~~~~----~~~--~f~~p~~v~~~~~~~~~~~~~~-~~--~~~~pp~~~~~la 63 (344) T protein:vir:60 1 MSK-------K-KGKTLQPAAKKMTASAPKM----EAF--TFGEPVPVLDRRDILDYVECIS-NG--RWYEPPISFTGLA 63 (344) T ss_pred CCc-------c-cCCCCCchHHhhcCCcCcE----EEE--EcCCceeecCCcchhHHHHhhh-cC--ccccCCCCHHHHH Confidence 221 1 0011111000000000000 111 01100 11113333333332 23 222 111 Q ss_pred ---hhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCCh-hhHHHHHHHHhcceeecCceEEEEEEcCC Q lcl|Aclame:pro 71 ---RSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGA-LGQAQLIKRVVEQLTVAGETWVAILFTDK 146 (629) Q Consensus 71 ---r~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~-lGQaqLlkr~~~~LtVpGE~wI~il~r~~ 146 (629) ++|.... |. ...+..-|+..+-.++ +-..++ ++++.++.+-|.+|+-++--.. T Consensus 64 ~~~~a~~~h~-----~~-----------------i~~k~n~l~~~~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~rn~~ 120 (344) T protein:vir:60 64 KSLRAAVHHS-----SP-----------------IYVKRNILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTT 120 (344) T ss_pred HHHHhhhhhc-----cc-----------------hhhhhhHHHhhccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCC Confidence 1111110 00 0111222222222222 334555 7888999999999997753222 Q ss_pred cccccCcccchhhheecHHHhcc--CCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhh Q lcl|Aclame:pro 147 SRLDSNGNPVPEWLALTPEEVRA--SEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRT 224 (629) Q Consensus 147 ~~~d~~~~~~~eW~~vt~~eI~~--~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rt 224 (629) |+ ++. ...|...-|.. .++..-.....|..++|.. +-||++=+|+|..-..==||..+++.++. + T Consensus 121 G~------~~~-L~~l~~~~vr~~~~~~~~~~v~~~~~~~~~~~--~eIiHir~~~~~~~~yGlsp~~~a~~si~----l 187 (344) T protein:vir:60 121 GK------VIR-LETSPAKYTRRGVEEDVYWWVPSFNEPTAFAP--GSVFHLLEPDINQELYGLPEYLSALNSAW----L 187 (344) T ss_pred Cc------EEE-EEEcCcceEEEeecCCeEEEEccCCeEEEEcC--ccEEEEcCCCCCCCcccccHHHHHHHHHH----H Confidence 32 221 22223333332 2332333344565555543 34677778888777778889888877654 2 Q ss_pred hHHHHHHHHhHhhhCc-----eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccc Q lcl|Aclame:pro 225 TKTIANASKSRLIGNG-----VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAAL 299 (629) Q Consensus 225 tk~I~naa~SRL~gnG-----vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~ 299 (629) ... ...-+.|...|| ||.+|.. .......+.|.+.|-+ -...-+. T Consensus 188 ~~~-a~~~~~~~f~NG~~pg~il~~~~~---------------------~ls~e~~~~ik~~~~~--------~~g~~~~ 237 (344) T protein:vir:60 188 NES-ATLFRRKYYENGAHAGYIMYVTDA---------------------VQDRNDIEMLRENMVK--------SKGRNNF 237 (344) T ss_pred HHH-HHHHHHHHHhccCCCceEEEecCc---------------------CCCHHHHHHHHHHHHH--------hcCCCCC Confidence 222 222345555555 4444421 0112234445554432 1222356 Q ss_pred cceeeeechHHhcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhH Q lcl|Aclame:pro 300 IPMFAAAPGELIKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPP 376 (629) Q Consensus 300 vPIva~vP~E~i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~ 376 (629) =++|+.+|+.--+++|...++..-.+- -+++|+-....||..+-||| .|||+- +.+|+.++-+....=++..|.|. T Consensus 238 r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp-~llGi~~~~t~~~~n~e~~~~~f~~~~L~Pl 316 (344) T protein:vir:60 238 KNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPF-QLMGGKPENVGSLGDIEKVAKVFVRNELIPL 316 (344) T ss_pred cceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCH-HHhcccCCCCCccccHHHHHHHHHHHHHHHH Confidence 688999999877888887775444433 48999999999999999999 799973 23457778888888899999999 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCc Q lcl|Aclame:pro 377 VEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDK 418 (629) Q Consensus 377 ~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~ 418 (629) ++.|++ |.+ + | |.... -|+...|..| |- T Consensus 317 ~~~~e~-ln~-~----l---g~~~i----~F~~~~l~~~-d~ 344 (344) T protein:vir:60 317 QDRIRE-ING-W----L---GQEVI----RFKNYSLDTD-NG 344 (344) T ss_pred HHHHHH-HHH-h----c---CCccc----ccCccccCCC-CC Confidence 999975 443 2 3 33222 2333445444 11 No 108 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=98.29 E-value=9.2e-08 Score=59.16 Aligned_cols=344 Identities=16% Similarity=0.150 Sum_probs=162.9 Q ss_pred CCCC-cceeEEc-------CCCCCCCcccce-----eeeccc---ccCcccc--hhhh--hccCCcccchhHHHHHHHhh Q lcl|Aclame:pro 1 MAPT-SLRIVRR-------PKSEPVSTRQRA-----LVAASQ---PVENPGK--AFRK--AMGSSTRTDWQEDAWKAYDA 60 (629) Q Consensus 1 ma~t-~lr~vr~-------pk~~~~~~r~r~-----l~aAsa---~~~~~~~--~~kk--~~~~~~~~~WQ~eAW~~~d~ 60 (629) |-+. .-|--|+ -.+-.|+.|++. .+++.+ ....|++ .|.- ......+ .|..+..+++. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~-~~~~~~~~~~~- 78 (376) T protein:vir:10 1 MPARDRPRAARRRRHSFIFIHGVLRMSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNR-AEILDYVECWS- 78 (376) T ss_pred CCCCccchhhhhhcccchhhcccccchhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCc-chhhhhhhhhh- Confidence 3221 0000000 011112222111 111110 0111111 1100 0000011 12222222221 Q ss_pred cchhhhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHH-----HHHHHHhc-CChhhHHHHHHHHhcceeec Q lcl|Aclame:pro 61 VGELRYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARV-----QQIVNQIA-GGALGQAQLIKRVVEQLTVA 134 (629) Q Consensus 61 VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~-----~~iv~~ia-GG~lGQaqLlkr~~~~LtVp 134 (629) -| +|-..-+++ + |.- ..-.-++-+.++ .-++..+- ..-+-+.+ +++++.++.+= T Consensus 79 ~~------~~~~pp~~~----------~-~La--~~~~~~~~h~s~l~~k~n~l~~~~~Pnp~lT~~~-f~~~v~d~ll~ 138 (376) T protein:vir:10 79 NG------EWFEPPVSF----------A-GLA--KSFRASTHHSSALFFKANVLASTFRPHRWLSRHA-FERWALDFLTF 138 (376) T ss_pred cC------ceecCCCCH----------H-HHH--HHHhhhHHhhhhHHHHhHHHHhccCCCCCCCHHH-HHHHHHHHHhc Confidence 11 121111111 1 000 000112222222 22222222 22233444 46778888899 Q ss_pred CceEEEEEEcCCcccccCcccchhhheecHHHhc--cCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchh Q lcl|Aclame:pro 135 GETWVAILFTDKSRLDSNGNPVPEWLALTPEEVR--ASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVR 212 (629) Q Consensus 135 GE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~--~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVR 212 (629) |.+|+.++--..|. ++. .+.|...-|. ..++........|..++|.. +-||++=+|+|.....-=||.. T Consensus 139 Gnay~~~~rn~~G~------~~~-L~pl~~~~vr~~~d~~~~~~~~~~~~~~~~~~--~eViHir~~~~~~~~yGls~~~ 209 (376) T protein:vir:10 139 GNGYLERRRNMVGG------TLR-LEPALAKYVRRKADFNGFVYVNGWQERHEFEP--DSVFQLVRPDINQEVYGLPEYL 209 (376) T ss_pred CCeEEEEEECCCCC------EEE-EEEeCCcceEEEeeCCeEEEEEcCCeEEEEcc--ccEEEecCCCCCCCcccccHHH Confidence 99998776333332 222 2233333333 23344445555666666643 3356665677776666678999 Q ss_pred hhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecC-CccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhccc Q lcl|Aclame:pro 213 ANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPH-EMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYD 291 (629) Q Consensus 213 a~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPq-e~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~ 291 (629) +++.++.--...++.-++--+.=..-.|||.++. .++ ....+.|.+.|- T Consensus 210 ~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d~~l~----------------------~e~~~~lr~~~~-------- 259 (376) T protein:vir:10 210 SSLHSAWLNESSTLFRRKYYENGSHAGFILYMTDAAQK----------------------QDDVDNMRDALK-------- 259 (376) T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC----------------------HHHHHHHHHHHH-------- Confidence 9888765433333332222222233345666653 222 223455555553 Q ss_pred CccccccccceeeeechHHhcCceeEEeCCchh-HHHHHHHHHHHHHHhhhccCchHHhhcccc--CcchhhHhHHhhhh Q lcl|Aclame:pro 292 DEDSMAALIPMFAAAPGELIKNVTHLKFDNQVT-EVAIKTRNDAIARLAMGLDVSPERLLGLGS--NSNHWSAWQIGDED 368 (629) Q Consensus 292 De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvt-e~aiktR~daIrrlA~~lD~~pE~LLGlg~--~~NhwsAw~i~de~ 368 (629) +-......=.+++..|+..=+.+|...++..-. .--+++|+.....||..+.||| .|+|+-. .+|..++.+....= T Consensus 260 ~~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp-~llGi~~~~t~~~sn~eq~~~~f 338 (376) T protein:vir:10 260 NAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPP-QLLGIVPSNSGGFGTPDTAARVF 338 (376) T ss_pred HhcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcccHHHHHHHH Confidence 212223344466677776556677666654333 3358899999999999999999 7899832 34678888998888 Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCch Q lcl|Aclame:pro 369 VRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKT 419 (629) Q Consensus 369 v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t 419 (629) ++.-|.|.++.|.+ |++ +| | .+||-||..+|.--.-++ T Consensus 339 ~~~~L~Pl~~~iee-ln~-~L-------~----~~~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 339 GRNEIRPLQARFAE-LND-WL-------G----EEVVRFDDYEIPPAPVAA 376 (376) T ss_pred HHHHHHHHHHHHHH-HHh-hc-------c----ccccccChhHhhcccccC Confidence 99999999999975 554 22 1 234556666654432222 No 109 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.25 E-value=2e-06 Score=51.81 Aligned_cols=439 Identities=14% Similarity=0.097 Sum_probs=202.0 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchh-hhhc-cCCcccchhHHHHHHHhhcchhhhhhhhhhhceeee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAF-RKAM-GSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRV 78 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~-kk~~-~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~ 78 (629) |--|..=++ +|+++.+.-++ +..++..+... ++.+ +.+...++....+.+....=.|-.--+|-++++... T Consensus 1 m~~~~~~~~------a~~~~~~~~~~-~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~ 73 (495) T protein:vir:10 1 MNMTPSGYQ------SLASGLLVPVG-ASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATW 73 (495) T ss_pred CCccccccc------ccchhhhhHHH-hhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 444322111 11111111111 11122111111 1222 112333344433333333223333334444444322 Q ss_pred E--EEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHh-----cCChhhHHHHHHHHhcceeecCceEEEEEEcCCccccc Q lcl|Aclame:pro 79 R--LIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQI-----AGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDS 151 (629) Q Consensus 79 r--L~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~i-----aGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~ 151 (629) . +|.+-|-| .-.+++ .....++...-+.- +.|.+-=.+|.+.+...+.+-||+.+++..++.+.... T Consensus 74 ~~~vVG~Gi~p-----~~~~~~-~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~ 147 (495) T protein:vir:10 74 VAAAVGNGLTP-----RWRMKE-QELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLS 147 (495) T ss_pred HHhhcCCCccc-----ccCCch-HHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCc Confidence 1 12222322 222222 22233343333333 35666667778888888889999999988775432110 Q ss_pred Ccccc----hhhheec------------HHHhccC--CCeeEEEC---CCCCC------CcccC-CCceEEEEeCCCccc Q lcl|Aclame:pro 152 NGNPV----PEWLALT------------PEEVRAS--EKKTIIEL---PTGDK------HEFRD-GLDGMFRVWNPRARR 203 (629) Q Consensus 152 ~~~~~----~eW~~vt------------~~eI~~~--~~~~~i~l---P~g~~------h~~~~-~~D~~~RvW~P~Prr 203 (629) -+-.. .++.... +..|+-+ |.-+..-+ -.|+. .++.. ...-|+++++++|.- T Consensus 148 ~~~~lqliepd~l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~~r~gQ 227 (495) T protein:vir:10 148 VPLQLQIIEPDMLASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTVLTVRS 227 (495) T ss_pred cceEEEEechhhcCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccccCCCc Confidence 00000 1111111 1122211 11111111 11111 11111 122367777655443 Q ss_pred ccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCcee-eecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHH Q lcl|Aclame:pro 204 AREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV-FVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELL 282 (629) Q Consensus 204 a~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvl-fvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml 282 (629) .--- |--++| + -|..+.++..+....-.+.+=+. ||=++. |........+.++.. ..+ T Consensus 228 ~RGi--s~la~i--~-~l~~l~~y~dael~~a~i~A~~~~fi~~~~--~~~~~~~~~~~~~~~---~~~----------- 286 (495) T protein:vir:10 228 DAGA--PWFQLL--L-RLNELDQYEDAELVRKKTAALFAAFIQEAT--ADSTGGPTIGQPKRS---KGG----------- 286 (495) T ss_pred ccCc--chhHHH--H-HHHHhhHHHHHHHHHHHHhhhheeeeecCC--CccccccccCccccc---cCc----------- Confidence 3322 223333 3 36667777777766666666544 443321 222111111111110 000 Q ss_pred HHHHhhcccCccccccccc-eee-eechHHhcCceeEEeCC--chhHHHHHHHHHHHHHHhhhccCchHHhhccccCcch Q lcl|Aclame:pro 283 FQVAQTAYDDEDSMAALIP-MFA-AAPGELIKNVTHLKFDN--QVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNH 358 (629) Q Consensus 283 ~qva~tAi~De~S~AA~vP-Iva-~vP~E~i~~ikhL~f~~--dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~~Nh 358 (629) .+.-.+=| .|. --|||- |+|-+ ..+.---.+..-.+|.||.|++||-|.|.|=-+++|+ T Consensus 287 -----------~~~~~l~pG~i~~L~pGe~------i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nY 349 (495) T protein:vir:10 287 -----------KRITGLNPGTLQYLQPGQE------VKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNY 349 (495) T ss_pred -----------ccceecCCceeeecCCCCe------eeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccH Confidence 00000111 111 123333 33322 1234445678889999999999999999986679999 Q ss_pred hhHhHHhhhhhhhhhh--h--HHHHHHHHHHHHHHHHHHHhcCCC-------hhhe--EeeecCcccccCCCchHHH-HH Q lcl|Aclame:pro 359 WSAWQIGDEDVRLHIL--P--PVEMLCEAITNQVLRTVLMREGID-------PNAY--VVWHDASQLTVDPDKTDEA-RD 424 (629) Q Consensus 359 wsAw~i~de~v~~hI~--P--~~~~i~~alt~~~lr~~Le~eG~d-------~~~y--v~w~DaS~L~~~Pd~t~eA-~~ 424 (629) +|+-+-.-|..+.--. = ++..+|+-|++-||.-++..--|+ ...| +-|.=+.-..+||-|.-+| +. T Consensus 350 SS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~ 429 (495) T protein:vir:10 350 SSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLG 429 (495) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHHHH Confidence 9999988887765322 1 235689999999999887553333 2334 3488888899999997777 77 Q ss_pred HHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCCc Q lcl|Aclame:pro 425 AFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDEE 504 (629) Q Consensus 425 ~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~e 504 (629) +++.|..|-+.+-+++|.+-++.+ +|.|.+.-..+- + ++.|+..|...... .... T Consensus 430 ~i~~G~~s~~~~~a~~G~D~~~v~--------~q~a~e~~~~~~-----~--------Gl~~~~~p~~~~~~-~~~~--- 484 (495) T protein:vir:10 430 DVRAGFAPISDKQAERGYDMEELF--------DMISDANQLIDE-----Y--------DLRLDSDPRYVNGS-GAEQ--- 484 (495) T ss_pred HHHcCCCCHHHHHHHcCCCHHHHH--------HHHHHHHHHHHH-----c--------CCCCCCCCCcCCCc-cCCC--- Confidence 999999999999999998766333 344444322111 1 12232211111100 0000 Q ss_pred CCCCCCCCCCCCCCCC Q lcl|Aclame:pro 505 ASGASRREEPDTEDDA 520 (629) Q Consensus 505 ~~~~~~~~ePdTe~d~ 520 (629) ...+++++++. T Consensus 485 -----~~~~~~~~~~e 495 (495) T protein:vir:10 485 -----KSVMEAALNNE 495 (495) T ss_pred -----CCCCCCCCCCC Confidence 01111111111 No 110 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=98.21 E-value=2.2e-07 Score=57.06 Aligned_cols=326 Identities=15% Similarity=0.184 Sum_probs=159.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeee-cccccCcccchh--hhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceee Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVA-ASQPVENPGKAF--RKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASR 77 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~a-Asa~~~~~~~~~--kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr 77 (629) |--..-| +. .+.++ +++++ ..| -.-.-...+. |..+.++++. -| +|...-+++ T Consensus 1 m~~~~~~--------~~----~~~~~~~~~~~----~~~~~~~p~~~~~~~-~~~~~~~~~~-~~------~~~~pp~~~ 56 (340) T protein:vir:98 1 MSKRKPR--------KA----VAMTASAPQKM----EAFTFGEPVPVLDKR-DILDYVECIS-NG------KWYEPPVSF 56 (340) T ss_pred CCCCCCC--------cc----ccccccCccce----eEEEcCCceeecCcc-hhhhhhhhhh-cC------ceecCCCCH Confidence 4321111 00 11111 11111 112 0000012222 3344444442 23 222222221 Q ss_pred eEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCCh-hhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccc Q lcl|Aclame:pro 78 VRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGA-LGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPV 156 (629) Q Consensus 78 ~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~-lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~ 156 (629) .-| |--+.. ..-+.-+...+..-++..+-.++ +-+.+ +++++.++.+-|.+|+.++--..|. .+ T Consensus 57 ~~l-a~l~~a-------~~~h~s~i~~k~n~l~~~~~Pn~~lt~~~-f~~~~~d~ll~Gnay~~~~rn~~G~------~~ 121 (340) T protein:vir:98 57 SGL-AKSLRS-------AVHHSSPIYVKRNVLASTYIPHPLLSRQD-FSRFALDYLVFGNAFLEQRHSVTGQ------LI 121 (340) T ss_pred HHH-HHHHHh-------ccccchhhhhhhhHHhhccCCCCCCCHHH-HHHHHHHHHhcCCeEEEEEECCCCc------EE Confidence 100 000000 00000000111111222222222 23333 4778888889999999886322232 11 Q ss_pred hhhheecHHHhccC--CCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHHHHh Q lcl|Aclame:pro 157 PEWLALTPEEVRAS--EKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) Q Consensus 157 ~eW~~vt~~eI~~~--~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~naa~S 234 (629) . ...+....+... ++..-...+.|.+++|..+ -||++=+|+|..-..--||..+++.++.- ... ...-+. T Consensus 122 ~-L~pl~~~~vr~~~~~~~~~~~~~~~~~~~~~~~--eViHir~~~~~~~~~Gls~~~~a~~si~l----~~a-a~~~~~ 193 (340) T protein:vir:98 122 K-LLTSPAKYTRRGVDDSVFWFVENFTQPHEFAPD--TVFHLLEPDINQEIYGLPEYLSALNSAWL----NES-ATLFRR 193 (340) T ss_pred E-EEEeCCceEEEcccCcEEEEEecCCeEEEEccc--cEEEEcCCCCCCCcccccHHHHHHHHHHH----HHH-HHHHHH Confidence 1 222233334332 2323334456666666432 36666677887777778898888776532 221 222334 Q ss_pred HhhhCc-----eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechH Q lcl|Aclame:pro 235 RLIGNG-----VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGE 309 (629) Q Consensus 235 RL~gnG-----vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E 309 (629) |...|| ||.+|... ......+.|.+.| ++-......=.+++..|+. T Consensus 194 ~~f~NGa~pg~il~~~~~~---------------------ls~e~~~~lk~~~--------~~~~G~~n~~~~~vl~~~g 244 (340) T protein:vir:98 194 KYYQNGAHAGYIMYVTDPA---------------------QSATDVESLRDAM--------RNSKGLGNFKNLFFYSPNG 244 (340) T ss_pred HHHhccCCCceEEEecCCC---------------------CCHHHHHHHHHHH--------HHhcCccccCceeEecCCC Confidence 555555 56555211 0112334444433 3322233445778888887 Q ss_pred HhcCceeEEeCCchh-HHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 310 LIKNVTHLKFDNQVT-EVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEMLCEAITN 386 (629) Q Consensus 310 ~i~~ikhL~f~~dvt-e~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~i~~alt~ 386 (629) .-+++|...++..-. .--+++|+-.+..||..+.||| .|+|+- +.+|..+.-+....=++..|.|.++.|.+ |++ T Consensus 245 ~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp-~llGi~~~~t~~~sn~e~~~~~f~~~~l~Pl~~~iee-~n~ 322 (340) T protein:vir:98 245 KPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPF-QLMGGKPENIGSLGDVEKVAKVFVRNELSPLQDRFRE-VND 322 (340) T ss_pred CccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCH-HHhcccCCCCCccccHHHHHHHHHHHHHHHHHHHHHH-HHh Confidence 667777777764433 3458899999999999999999 799982 23456788899999999999999999985 554 Q ss_pred HHHHHHHHhcCCChhheEeeecCcccccCCC Q lcl|Aclame:pro 387 QVLRTVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) Q Consensus 387 ~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd 417 (629) +| ..+ |+-||...|.-. | T Consensus 323 -~L----~~e-------~~rF~~~~l~~~-d 340 (340) T protein:vir:98 323 -WL----GME-------VIRFKEYTLDNP-E 340 (340) T ss_pred -cc----ccc-------ccccCccccccC-C Confidence 32 112 233444444322 2 No 111 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=98.13 E-value=3.7e-07 Score=55.83 Aligned_cols=215 Identities=10% Similarity=0.062 Sum_probs=117.0 Q ss_pred EEEcCCcccccCcccchhhheecHHHhccCCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHH Q lcl|Aclame:pro 141 ILFTDKSRLDSNGNPVPEWLALTPEEVRASEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKE 220 (629) Q Consensus 141 il~r~~~~~d~~~~~~~eW~~vt~~eI~~~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrE 220 (629) |....++.- ||..........+ ...+++. |-||++=.|+|..-..==||+.+|+..+.. T Consensus 1 ~r~~~dg~~---------~y~~~~~~~~~~g--~~~~~~~----------~eilH~r~~~~~~~~~Glspi~~a~~~i~~ 59 (219) T protein:vir:98 1 MRVCKDGNY---------KYLMKKSLYDTKS--EIYEYNK----------NDVIFIKLYDPMQQVYGSPDYVGGITSALL 59 (219) T ss_pred CceeecCeE---------EEEEecceecCCc--eeEEecc----------ccEEEecCCCCCCCcceecHHHHHHHHHHH Confidence 111122211 3333211111111 1222222 236777677777766677898888765542 Q ss_pred HHhhhHHHHHHHHhHhhhCceeeecCCc-cCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccc Q lcl|Aclame:pro 221 IVRTTKTIANASKSRLIGNGVVFVPHEM-SLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAAL 299 (629) Q Consensus 221 I~rttk~I~naa~SRL~gnGvlfvPqe~-slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~ 299 (629) ...... -+.++..||- .|.+. ..|.. .....+.+.|.+-|.+ + .++.. . T Consensus 60 ----~~aa~~-~~~~~f~Ng~--~p~gil~~~~~---------------~l~~e~~~~~~~~~~~----~---~g~~n-~ 109 (219) T protein:vir:98 60 ----NSDATI-FRRRYYSNGA--HMGFILYSTDP---------------DMTEEMEDEIAERIRD----S---KGVGN-F 109 (219) T ss_pred ----HHHHHH-HHHHHHhcCC--CCceEEEeCCC---------------CCCHHHHHHHHHHHHH----h---cCccc-c Confidence 222211 2234555653 33331 11110 0012244555555532 1 12222 2 Q ss_pred cceeeeechHHhcCceeEEeCC-chhHHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhH Q lcl|Aclame:pro 300 IPMFAAAPGELIKNVTHLKFDN-QVTEVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPP 376 (629) Q Consensus 300 vPIva~vP~E~i~~ikhL~f~~-dvte~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~ 376 (629) =++++..|+..-+.+|.-.+.- -.+.--+++|+..+..||..|.||| .+||+- +..+..++-++.-.=++..+.|. T Consensus 110 ~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp-~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~ 188 (219) T protein:vir:98 110 RSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPP-GLSGIIPVNTAGLGDPLKIREAYQADEVLPL 188 (219) T ss_pred cceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCH-HHcccccCCCCCccCHHHHHHHHHHHHHHHH Confidence 4677888886555566555542 2244578999999999999999999 788862 24556778888888899999999 Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCC Q lcl|Aclame:pro 377 VEMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) Q Consensus 377 ~~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd 417 (629) ++.|.++|+++++-+ +..+ +-||.-.++ |-| T Consensus 189 ~~~ie~~ln~~~~~~--------~~~~-~~F~~~~~~-d~~ 219 (219) T protein:vir:98 189 QEIIAESINSDYEIK--------SALK-VNFKQPEKR-DKN 219 (219) T ss_pred HHHHHHHhhhhhcCC--------CccE-EeecCcccc-cCC Confidence 999999999875432 2222 233322222 112 No 112 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=98.03 E-value=3.5e-06 Score=50.51 Aligned_cols=323 Identities=14% Similarity=0.196 Sum_probs=162.6 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhh---hh-------h Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYY---VG-------W 70 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryy---vg-------W 70 (629) |. +| |..++++.....+++++.+. +-.|-.-.-.-.+ .|-.+..+++. .|+ || +. . T Consensus 1 ~~-------~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~v~~~-~~~~~~~~~~~-~~~--~~~pp~~~~~la~~~ 66 (344) T protein:vir:56 1 MS-------KK-KGKTPQPAAKTMTASAPKME--AFTFGEPVPVLDR-RDILDYVECIS-NGR--WYEPPVSFTGLAKSL 66 (344) T ss_pred CC-------CC-CCCCCchhhHHhhcCCCceE--EEEcCCceeecCc-chhhhHHHhhh-cCc--cccCCCCHHHHHHHH Confidence 22 11 11222222222222222211 0111000001111 12222222221 232 22 01 1 Q ss_pred hhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCC-hhhHHHHHHHHhcceeecCceEEEEEEcCCccc Q lcl|Aclame:pro 71 RSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGG-ALGQAQLIKRVVEQLTVAGETWVAILFTDKSRL 149 (629) Q Consensus 71 r~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG-~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~ 149 (629) ++|....-=||+ +..-++..+-.. -+-+.++ ++++.++.+=|.+|+-++--..|+. T Consensus 67 ~a~~~h~s~i~~----------------------k~n~l~~~~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~rn~~G~~ 123 (344) T protein:vir:56 67 RAAVHHSSPIYV----------------------KRNILASTFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKV 123 (344) T ss_pred hhhhhhCcccee----------------------hhhhHHhhcCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcE Confidence 122111000111 111111111122 2334555 7888899999999998752222321 Q ss_pred ccCcccchhhheecHHHhcc--CCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHH Q lcl|Aclame:pro 150 DSNGNPVPEWLALTPEEVRA--SEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKT 227 (629) Q Consensus 150 d~~~~~~~eW~~vt~~eI~~--~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~ 227 (629) +. -+.+....|.. .++........|..++|.. +-||++=+|+|..-..-=||..+++.++. +... T Consensus 124 ------~~-L~pl~~~~v~~~~~~~~~~~~~~~g~~~~~~~--~dIiHir~~~~~~~~~Gls~~~~a~~si~----l~~~ 190 (344) T protein:vir:56 124 ------IR-LETSPAKYTRRGVEEDVYWWVPSFNEPTAFAP--GSVFHLLEPDINQELYGLPEYLSALNSAW----LNES 190 (344) T ss_pred ------EE-EEEeCCceeEEeecCCEEEEEecCCeEEEEcC--ccEEEECCCCCCCCcccccHHHHHHHHHH----HHHH Confidence 11 11122223332 3343344555666666643 34677777888776677788888776654 3322 Q ss_pred HHHHHHhHhhhCc-----eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccce Q lcl|Aclame:pro 228 IANASKSRLIGNG-----VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPM 302 (629) Q Consensus 228 I~naa~SRL~gnG-----vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPI 302 (629) .. ..+.|+..|| ||.+|... ......+.|.+.|.+ -...-+.=++ T Consensus 191 a~-~~~~~~f~NGa~pg~Il~~~d~~---------------------ls~e~~~~lk~~~~~--------~~g~~~~r~l 240 (344) T protein:vir:56 191 AT-LFRRKYYENGAHAGYIMYVTDAV---------------------QDRNDIEMLRENMVK--------SKGRNNFKNL 240 (344) T ss_pred HH-HHHHHHHhccCCCceEEEecCCC---------------------CCHHHHHHHHHHHHH--------hcCCCCccce Confidence 22 2345666555 45554311 011234445555432 1122467889 Q ss_pred eeeechHHhcCceeEEeCCchhHH-HHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHH Q lcl|Aclame:pro 303 FAAAPGELIKNVTHLKFDNQVTEV-AIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEM 379 (629) Q Consensus 303 va~vP~E~i~~ikhL~f~~dvte~-aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~ 379 (629) |+..|+..-+++|...++..-.+- -+++|+-....||..+-||| .|+|+- +.+|..++.++...=++..|.|.++. T Consensus 241 ~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp-~llGi~~~~t~~~~n~eq~~~~f~~~tL~Pl~~~ 319 (344) T protein:vir:56 241 FLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPF-QLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDR 319 (344) T ss_pred EEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCH-HHhccCCCCCCccccHHHHHHHHHHHHHHHHHHH Confidence 999999887888888886544433 48999999999999999999 799972 22446678888888899999999999 Q ss_pred HHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCC Q lcl|Aclame:pro 380 LCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) Q Consensus 380 i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd 417 (629) |++ +.+. | ..+=+...+|.+ ..|-- T Consensus 320 ie~-~n~~-l----~~~~~~F~~y~l-------~~~~~ 344 (344) T protein:vir:56 320 IRE-INGW-I----GQEVIRFKNYSL-------DTDNG 344 (344) T ss_pred HHH-HHhh-h----ccccccCCCccc-------cccCC Confidence 975 4433 2 122234444544 33311 No 113 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=97.97 E-value=8.6e-06 Score=48.36 Aligned_cols=464 Identities=15% Similarity=0.128 Sum_probs=198.8 Q ss_pred CCCC--cceeEEcCCCCCCC--cc--cceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPT--SLRIVRRPKSEPVS--TR--QRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t--~lr~vr~pk~~~~~--~r--~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s 74 (629) |--= ..+-+ -|..+..- +| .++.-||+.- ....-+ . ...+...+++.....+....=.|---.+|-++. T Consensus 1 Mn~iDr~i~~~-sP~~a~~R~~ar~~~~~y~aa~~~--r~~~~~-~-~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~a 75 (548) T protein:vir:95 1 MNLIDRLLEPL-APELVARRLAAREAIQAYEAARPG--RTHKAK-R-QPLGADTSLQKSAVSMREQCRKLDEDHDLVTGL 75 (548) T ss_pred CchHHhHhhhc-chHHHHHHHHhHHHhccccccCcc--cccccc-C-CCCChHHHHHHHHHHHHHHHHHHHhcChHHHHH Confidence 1100 00001 01111100 00 1223333321 111111 1 112222334433222222222222233344444 Q ss_pred eeee-EEEEE----eecCCCCCCCCCCCCCcchhHHHHHHHHHh---------cCChhhHHHHHHHHhcceeecCceEEE Q lcl|Aclame:pro 75 ASRV-RLIAS----AIDPDTGLPTGSIDEDDRVGARVQQIVNQI---------AGGALGQAQLIKRVVEQLTVAGETWVA 140 (629) Q Consensus 75 ~Sr~-rL~as----eiD~DtG~ptg~~~~~~~~~~r~~~iv~~i---------aGG~lGQaqLlkr~~~~LtVpGE~wI~ 140 (629) +.+. .-++| -+.|. |.+..+ ....+..+.++.. +.|.+-=.+|.+.+...+.+-||+++. T Consensus 76 v~~~~~nvVG~~G~~i~p~---~l~~d~---~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~ 149 (548) T protein:vir:95 76 LDRLEERVVGGSGIGVEPL---PLRLDG---SVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQ 149 (548) T ss_pred HHHHHHhccCccccceeee---ecCCCH---HHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEE Confidence 4332 22222 22221 222211 1223344444444 678888888899999999999999998 Q ss_pred EEEcCCcccccCcccch-hhheecHHHhccCCCe--eEEECCCCCCCcccCCCce-EEEEeCCCcccc------------ Q lcl|Aclame:pro 141 ILFTDKSRLDSNGNPVP-EWLALTPEEVRASEKK--TIIELPTGDKHEFRDGLDG-MFRVWNPRARRA------------ 204 (629) Q Consensus 141 il~r~~~~~d~~~~~~~-eW~~vt~~eI~~~~~~--~~i~lP~g~~h~~~~~~D~-~~RvW~P~Prra------------ 204 (629) ++.++.+... .+.++. .=..+..+-|...... -.|. .| -|||..+-+ -.+|++.||... T Consensus 150 ~~~~~~~~~~-~g~~~~~~lqliepd~l~~~~~~~~~~i~--~G--IE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rv 224 (548) T protein:vir:95 150 KLMGRVPNYT-FATSVPFALELLEPDYLPFSYNNLSKGIV--QG--IERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRV 224 (548) T ss_pred eeeccccccc-CCcccceEEEEechhhcCCCCCCCCCcee--ee--eEECCCCceEEEEEeecCCCcccccccccceeee Confidence 8776543211 111111 0123333444321100 0000 11 033332222 244555554431 Q ss_pred --------------cC--CccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCce-eeecCCccCCcccCCCcCCCCCcccc Q lcl|Aclame:pro 205 --------------RE--PDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGV-VFVPHEMSLPSMNAPVASNKPGAPAP 267 (629) Q Consensus 205 --------------~e--aDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGv-lfvPqe~slP~~~ap~~~~~pG~~~p 267 (629) -| --|..-++|..|+.| .++..+....-.+.+-+ +||=. ..|....... +.. T Consensus 225 pA~~VlHif~~~r~gQ~RGvs~lapvl~~l~~l---~~y~dael~~aki~A~~a~fi~~--~~~~~~~~~~----~~~-- 293 (548) T protein:vir:95 225 EAERIIHIAYRKRIGQNRGVPMLHAVLIRLADL---KDYEESERVAARISAALAMYIKK--GNPDSYTVEP----GKD-- 293 (548) T ss_pred chhHheecccccCCccccCcchHHHHHHHHHHH---hHHHHHHHHHHHHhhhheeeeec--CCCccccCCC----Ccc-- Confidence 11 122333445544444 33334444433333333 23322 1222111100 000 Q ss_pred ccCCchhHHHHHHHHHHHHhhcccCccccccccce--eee-echHHhcCceeEEeCC--chhHHHHHHHHHHHHHHhhhc Q lcl|Aclame:pro 268 PILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPM--FAA-APGELIKNVTHLKFDN--QVTEVAIKTRNDAIARLAMGL 342 (629) Q Consensus 268 ~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPI--va~-vP~E~i~~ikhL~f~~--dvte~aiktR~daIrrlA~~l 342 (629) +...--.+-|= |-. .||| .|+|-+ .-+.---.+.+..+|.||.|+ T Consensus 294 ------------------------~~~~~~~~~pG~iv~~L~pGe------~i~~~~p~~p~~~~~~f~~~~lr~IAagl 343 (548) T protein:vir:95 294 ------------------------RKNRTIPIAPGMVFDDLEPGE------DVGMIESNRPNPFLEGFRNGQLRMIGAGT 343 (548) T ss_pred ------------------------cccccccccCCccccccCCCc------eeeecCCCCCCCCHHHHHHHHHHHHHhhc Confidence 00000001110 111 2333 344432 223344567888999999999 Q ss_pred cCchHHhhccccCcchhhHhHHhhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHhcCC------Chhhe--EeeecCc Q lcl|Aclame:pro 343 DVSPERLLGLGSNSNHWSAWQIGDEDVRLHILP----PVEMLCEAITNQVLRTVLMREGI------DPNAY--VVWHDAS 410 (629) Q Consensus 343 D~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P----~~~~i~~alt~~~lr~~Le~eG~------d~~~y--v~w~DaS 410 (629) +||-|.|.|= .++|++|+-+-.-|..+. +.- ++..+|+-|++.||.-++..=-| ++..| +-|.=+. T Consensus 344 GipYe~ltgD-~s~nYSS~R~~l~e~~r~-~~~~q~~~i~~~~~Pi~~~wle~a~l~G~i~lP~~~~~~~~~~~~W~~P~ 421 (548) T protein:vir:95 344 RSTYSSVSRA-YDGTYSAQRQELVEGWLG-YDLLQHEFIDYWCRPVYRSWLQMYLLARKERLPADVDHRTLYAAVYQGPV 421 (548) T ss_pred CCCHHHHhcc-cchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCchhheeeeeecCC Confidence 9999999996 467999998776665443 221 35678999999999888754333 33444 4588888 Q ss_pred ccccCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcc-hhhhhhhhc----ccccCc Q lcl|Aclame:pro 411 QLTVDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPN-LLPTLAVLI----PELADV 484 (629) Q Consensus 411 ~L~~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~-Li~~l~pll----~~~~~~ 484 (629) -..+||-|.-+| +.+++.|..|-++.-+++|.+-++.+ +|+|.+.-..+-. |+-..-|.. +...+. T Consensus 422 ~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~--------~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~~~ 493 (548) T protein:vir:95 422 MPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELK--------KSRETEIKANRAAGLVFSSDAYHQLVKSGMDPV 493 (548) T ss_pred ccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHH--------HHHHHHHHHHHHcCCCCCCcccccccccccCCC Confidence 888999987777 77999999999999999998866333 3555544322211 221111111 111111 Q ss_pred cCCCCCCCC----CCCCCCCCCCcCCCCCC-CCCCC---CCCCCCCCcccCCCCCc Q lcl|Aclame:pro 485 EFPTPTVAL----PPAEEQDGDEEASGASR-REEPD---TEDDAGTDDSDQASLDS 532 (629) Q Consensus 485 ~~p~p~~a~----~p~~~~~~~~e~~~~~~-~~ePd---Te~d~~~d~~~~a~~~a 532 (629) +-++....- .|++|....=+.-|+.- -..|| .+.+-+.|+.++-+ +. T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 548 (548) T protein:vir:95 494 EAVQKVYLGVGKMLTADEARELVNRYGAGLPVPGPDFPNESNNGGADGQPSNP-DP 548 (548) T ss_pred CchhhhccccccccccchhHHhhccCCCCCcCCCCCCCcccccCCCCCCCCCC-CC Confidence 111111000 12222211100000000 01111 11112222222222 22 No 114 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=97.96 E-value=2.8e-06 Score=51.06 Aligned_cols=330 Identities=15% Similarity=0.148 Sum_probs=162.5 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCC---cccchhH---HHHHHHh---------hcchhh Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSS---TRTDWQE---DAWKAYD---------AVGELR 65 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~---~~~~WQ~---eAW~~~d---------~VgELr 65 (629) |.-. --|+++..++.+-...-+++++... .| +++.. ....|.. |||..-+ ..-+|- T Consensus 1 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~ 71 (351) T protein:vir:78 1 MSKR---RSRAPRTFAAAPNPSAGSAAPARAE----VF--TFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSF 71 (351) T ss_pred CCCC---CCCCCCCCCCCCchhhhhcccceeE----EE--EcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHH Confidence 3221 1111111111111001111111110 11 00000 0001211 3331100 000111 Q ss_pred hhhhhhhhcee-eeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEc Q lcl|Aclame:pro 66 YYVGWRSSSAS-RVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFT 144 (629) Q Consensus 66 yyvgWr~~s~S-r~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r 144 (629) ....+.++.+- ++.++++.+.| ..-+-+.++ ++++.++.+=|.+|+.++-- T Consensus 72 ~~~~~h~~~l~~k~n~l~~~~~P---------------------------n~~~t~~~f-~~~~~d~ll~Gnay~~~~rn 123 (351) T protein:vir:78 72 RASTHHSSALFFKANVLASTFRP---------------------------HRWLSRHAF-ERWALDFLTFGNGYLERRRN 123 (351) T ss_pred hhhHhhhhhhhhhhhHHhhcccC---------------------------CCCCCHHHH-HHHHHHHHhcCCeEEEEEEC Confidence 11111111111 11111222211 222334455 56777777889999887643 Q ss_pred CCcccccCcccchhhheecHHHhcc--CCCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHH Q lcl|Aclame:pro 145 DKSRLDSNGNPVPEWLALTPEEVRA--SEKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIV 222 (629) Q Consensus 145 ~~~~~d~~~~~~~eW~~vt~~eI~~--~~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~ 222 (629) ..|. ++ +.+.|...-+.. .+++.......|..++|..+ | ||++=+|+|.....==||..+++.++..-. T Consensus 124 ~~G~------~~-~L~pl~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-e-Vihir~~~~~~~~yGl~~~~~a~~si~l~~ 194 (351) T protein:vir:78 124 MVGG------TL-RLEPALAKYVRRKADFSGFVYVNGWQERHEFAPD-S-VFQLVRPDINQEVYGLPEYLSSLHSAWLNE 194 (351) T ss_pred CCCC------EE-EEEEecCcceEEeeeCCeEEEEecCCeEEEEccc-c-EEEEcCCCCCCCcccccHHHHHHHHHHHHH Confidence 3332 22 223333334443 23444455566666666543 3 566667788777666789999988876444 Q ss_pred hhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccce Q lcl|Aclame:pro 223 RTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPM 302 (629) Q Consensus 223 rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPI 302 (629) -.++.-++.-+.-..-.|||.++... ......+.|.+.| ++-......=.+ T Consensus 195 ~a~~~~~~~f~NGa~pggIl~~~~~~---------------------ls~e~~~~lr~~~--------~~~~G~~N~~~~ 245 (351) T protein:vir:78 195 SSTLFRRKYYENGSHAGFILYMTDAA---------------------QKQDDVDNMRDAL--------KNAKGPGNFRNV 245 (351) T ss_pred HHHHHHHHHHhccCCCceEEEecCCC---------------------CCHHHHHHHHHHH--------HHhcCcccccce Confidence 44433333222222333455544210 1122344455444 222233445566 Q ss_pred eeeechHHhcCceeEEeCCchh-HHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHH Q lcl|Aclame:pro 303 FAAAPGELIKNVTHLKFDNQVT-EVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEM 379 (629) Q Consensus 303 va~vP~E~i~~ikhL~f~~dvt-e~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~ 379 (629) ++..|+..-+++|-..++..-. .--+++|+-....||..+-||| .|+|+- +.+|+.++.+....=++..|.|.++. T Consensus 246 ~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp-~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ 324 (351) T protein:vir:78 246 FMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPP-QLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQAR 324 (351) T ss_pred eeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHH Confidence 6777776667777777754433 3457899999999999999999 888983 23556788888888899999999999 Q ss_pred HHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCch Q lcl|Aclame:pro 380 LCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKT 419 (629) Q Consensus 380 i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t 419 (629) |++ |++ + | | . +||-||...|.--.-++ T Consensus 325 iee-~n~-~----l---~---~-~~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 325 FAE-LND-W----L---G---D-EVVRFDDYEIPPAPVAA 351 (351) T ss_pred HHH-HHh-h----c---C---c-cceecChhhhccccccC Confidence 986 443 2 2 2 2 24667777765443333 No 115 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=97.92 E-value=2.8e-06 Score=50.99 Aligned_cols=323 Identities=15% Similarity=0.144 Sum_probs=158.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhh--hhccCCcccchhHHHHHHHhhcchhhhhhhhh------- Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFR--KAMGSSTRTDWQEDAWKAYDAVGELRYYVGWR------- 71 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~k--k~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr------- 71 (629) |.-..- + ..++...+.++ .+...|. .-...-.+. |-.+..+++ ..+-+|. T Consensus 1 m~~~~~----~-----~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~-~~~~~~~~~------~~~~~~~~pp~~~~ 59 (346) T protein:vir:10 1 MKKQLR----K-----NLTQNDRLQPQ-----AQTEIFSFGDPIPVLDRA-DILNYLECS------AMYEKWYNPPMSFD 59 (346) T ss_pred CCcccC----C-----CCCcccccccc-----cCeEEEecCCcceecCch-hHHHHHHHh------hcCCceEecCCCHH Confidence 432211 1 11111111111 0111110 000011111 222222221 1112232 Q ss_pred -------hhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEc Q lcl|Aclame:pro 72 -------SSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFT 144 (629) Q Consensus 72 -------~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r 144 (629) +|..-..+|++.. | -+..+.+. =.+-+-+.++ ++++.++.+-|.+|+.+.-- T Consensus 60 ~la~l~~~~~~h~~~i~~k~-------------n------~l~~l~~~-Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~r~ 118 (346) T protein:vir:10 60 GLAKSLRSSTHHESAIITKA-------------N------ILLSTCEV-DSRYLSRRDL-SSFVKDYLVFGNAYFEVVRN 118 (346) T ss_pred HHHHHHHhhhhcchhhhhhh-------------h------hHHHHHhC-CCCCCCHHHH-HHHHHHHHhcCCeEEEEEEc Confidence 2222122222210 0 01122221 2233344555 56778888999999987532 Q ss_pred CCcccccCcccchhhheecHHHhcc--CCCee--EEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHH Q lcl|Aclame:pro 145 DKSRLDSNGNPVPEWLALTPEEVRA--SEKKT--IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKE 220 (629) Q Consensus 145 ~~~~~d~~~~~~~eW~~vt~~eI~~--~~~~~--~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrE 220 (629) ..|+. + +.+.|....|.. ..++. .+..++|..++|..+ -||++=+|+|..-..--||..+++.++.- T Consensus 119 ~~G~~------~-~L~pl~~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~--dIih~r~~~~~~~~~G~~~~~~a~~si~l 189 (346) T protein:vir:10 119 RLGQV------Q-RIESPLAKYVRKGLEAGQFYYVPQRFDHQEHEFAKG--SIYHLLEPDINQDIYGLPQYLSALQSAWL 189 (346) T ss_pred CCCcE------E-EEEEecCCceEEEEcCCeEEEEEEccCCeEEEEecc--cEEEecCCCCCCCeeeccHHHHHHHHHHH Confidence 33321 1 123333333432 22322 233456666666432 36666677777666777898888877655 Q ss_pred HHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCcccccccc Q lcl|Aclame:pro 221 IVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALI 300 (629) Q Consensus 221 I~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~v 300 (629) -...++.-++--+.=..-.|||.+|... ......+.|.+.|-+ +.. ....= T Consensus 190 ~~~a~~~~~~~~~NG~~~~~il~~~d~~---------------------l~~e~~~~i~~~~~~----~~g----~~n~~ 240 (346) T protein:vir:10 190 NESATLFRRKYFLNGAHAGFVFYMSDAS---------------------QKQEDVENIRQQLKQ----SKG----VGNFK 240 (346) T ss_pred HHHHHHHHHHHHhccCCCceEEEeCCCC---------------------CCHHHHHHHHHHHHH----hcC----ccccC Confidence 4444444333222222334555554311 012234445544432 221 11222 Q ss_pred ceeeeechHHhcCceeEEeCCch-hHHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHH Q lcl|Aclame:pro 301 PMFAAAPGELIKNVTHLKFDNQV-TEVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPV 377 (629) Q Consensus 301 PIva~vP~E~i~~ikhL~f~~dv-te~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~ 377 (629) -+++..|+..-+.+|-..++..- +.--+++|+.....||..+.||| .|||+- +.++..++.+....=++..|.|.+ T Consensus 241 ~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp-~llG~~~~~~~~~s~~e~~~~~f~~~~l~P~~ 319 (346) T protein:vir:10 241 NLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPP-QLMGIIPNNTGGFGNVADAAEVFFITEIEPLQ 319 (346) T ss_pred ceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcccHHHHHHHHHHHHHHHHH Confidence 34556666555666655553222 23357789999999999999999 688973 234577888888888999999999 Q ss_pred HHHHHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCC Q lcl|Aclame:pro 378 EMLCEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPD 417 (629) Q Consensus 378 ~~i~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd 417 (629) +.|++ +.+ + | | .+||-|+...|..--+ T Consensus 320 ~~iee-~n~-~----L---~----~e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 320 ERLKE-FNQ-W----L---G----QEVIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHH-HHh-h----c---c----cceeeechhhhcccCC Confidence 99986 332 2 2 2 1367788888877634 No 116 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=97.87 E-value=1.4e-05 Score=47.23 Aligned_cols=431 Identities=15% Similarity=0.116 Sum_probs=193.9 Q ss_pred CCCCccee--EEcCCCCCCCccccee-eecccccCcccchhh-h-----hccCCcccchh-------HHHHHHHhhcchh Q lcl|Aclame:pro 1 MAPTSLRI--VRRPKSEPVSTRQRAL-VAASQPVENPGKAFR-K-----AMGSSTRTDWQ-------EDAWKAYDAVGEL 64 (629) Q Consensus 1 ma~t~lr~--vr~pk~~~~~~r~r~l-~aAsa~~~~~~~~~k-k-----~~~~~~~~~WQ-------~eAW~~~d~VgEL 64 (629) |+..-.|- +-|.- ++..+++++- -.+...|+..+.... + ....+...+.. .+|-++|.--|=. T Consensus 1 ~~r~~~~~~~~dr~i-~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a 79 (505) T protein:vir:96 1 MKRAEKKPSLAQRMV-NWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYA 79 (505) T ss_pred CCCCccccchhhccc-chhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHH Confidence 54432221 11211 1121211110 001112222211110 1 11122222222 2334444444433 Q ss_pred hhhhh-hhhhcee--eeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHh-------cCChhhHHHHHHHHhcceeec Q lcl|Aclame:pro 65 RYYVG-WRSSSAS--RVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQI-------AGGALGQAQLIKRVVEQLTVA 134 (629) Q Consensus 65 ryyvg-Wr~~s~S--r~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~i-------aGG~lGQaqLlkr~~~~LtVp 134 (629) +=++. +..|-|. -.++..- ++... +.+++ ....++...-+.- +.|.+-=.+|.+.+...+.+- T Consensus 80 ~~av~~~~~nvVG~~Gi~~~~~-~~~~~----~~~~~--~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~d 152 (505) T protein:vir:96 80 KRFYQLLKNNVIGPKGMTFQSR-VKRRN----GKPDD--RANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARD 152 (505) T ss_pred HHHHHHHHHHhcCCCcceeeec-CCccc----ccccH--HHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhC Confidence 33333 4555553 2222222 22111 22222 1233333333332 457777777888888888899 Q ss_pred CceEEEEEEcCCcccccCcccchhhheecHHHhccCCCeeEEECCCCCC----CcccCCCce-EEEEeCCCccccc---- Q lcl|Aclame:pro 135 GETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRASEKKTIIELPTGDK----HEFRDGLDG-MFRVWNPRARRAR---- 205 (629) Q Consensus 135 GE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~~~~~~~i~lP~g~~----h~~~~~~D~-~~RvW~P~Prra~---- 205 (629) ||+.+.+..++.+.. + . .-..+..+-|...... .+++|.. -|||..+-+ -.+|++-||.... T Consensus 153 GE~f~~~~~~~~~~~---~--~-~lqliepd~l~~~~n~---~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~ 223 (505) T protein:vir:96 153 GEVLVREHRGYPNKW---G--Y-ALQILECDRLDLNYNA---DLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYH 223 (505) T ss_pred CceEEEEeecCCCCc---c--e-EEEEechhhcCCCCCc---ccCCcCeEEeceEECCCCceEEEEEeecCCCccccccc Confidence 999998877654421 1 0 0122333333322110 0011100 033332222 2445444444321 Q ss_pred ------------------------C--CccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCcee-eecCCccCCcccCCCc Q lcl|Aclame:pro 206 ------------------------E--PDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVV-FVPHEMSLPSMNAPVA 258 (629) Q Consensus 206 ------------------------e--aDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvl-fvPqe~slP~~~ap~~ 258 (629) | --|.--++|.. |..+.++..+....-.+.+=+. ||=.+ .+... T Consensus 224 ~~~~~~~rvpa~~vlH~f~~~r~gQ~RGis~lapvl~~---l~~l~~y~dael~~a~i~A~~a~fi~~~--~~~~~---- 294 (505) T protein:vir:96 224 YAGQTYERVPADEIIHTFVPWRPHQNRGIPWTHASMVE---LHHIGEYRKSEMIAAELGAKKVGFYEQD--PEAYD---- 294 (505) T ss_pred cccccccccCHhHhhhhhcccCCccccCcchHHHHHHH---HHHHhHHHHHHHHHHHHhhhheeeeecC--CccCC---- Confidence 1 11222233444 4444555555555555555443 44221 11110 Q ss_pred CCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHH Q lcl|Aclame:pro 259 SNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARL 338 (629) Q Consensus 259 ~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrl 338 (629) +.+++. .+. -..++..-. |.---|||-|+-+ .-.. -..--..+.+..+|.+ T Consensus 295 -~~~~~~----~~~-------------------~~~~l~pG~-i~~L~pGe~i~~~---~~~~-p~~~~~~f~~~~lr~i 345 (505) T protein:vir:96 295 -QPPEDD----QGE-------------------IVEEVEAGT-YQLLPYGIRFKEH---KIDH-PHTNFGAFVKSSLRGV 345 (505) T ss_pred -Cccccc----cCc-------------------cccccCCce-eeecCCCCeeeee---CCCC-CCCCHHHHHHHHHHHH Confidence 000000 000 000111110 1111234332221 1110 1223356778899999 Q ss_pred hhhccCchHHhhccccCcchhhHhHHhhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHhcCC-----Chhhe--Eeee Q lcl|Aclame:pro 339 AMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILP----PVEMLCEAITNQVLRTVLMREGI-----DPNAY--VVWH 407 (629) Q Consensus 339 A~~lD~~pE~LLGlg~~~NhwsAw~i~de~v~~hI~P----~~~~i~~alt~~~lr~~Le~eG~-----d~~~y--v~w~ 407 (629) |.|++||-|.|.|==+++|++|+-+-.-|..+. +.- +...+|+-|++.||.-++..--| +++.| +-|. T Consensus 346 aaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~-~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~w~ 424 (505) T protein:vir:96 346 AAGMGPAYNRLAHDLEGVNFSSLRSGELDERDL-YKLLQFFVVTELLERVAGNLISMSLLTQALPLNMVDIDRLSQYAFQ 424 (505) T ss_pred HhhcCCCHHHHhcccccccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccchhhceeeec Confidence 999999999999844689999998877766544 221 34578889999999887754333 35566 6698 Q ss_pred cCcccccCCCchHHH-HHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccC Q lcl|Aclame:pro 408 DASQLTVDPDKTDEA-RDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEF 486 (629) Q Consensus 408 DaS~L~~~Pd~t~eA-~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~ 486 (629) =+.-..+||-|.-+| +.+++.|..|-+++-+++|.+-++.. +|.|.+.-..+- ++ +.+ T Consensus 425 ~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~--------~q~a~e~~~~~~---------~G----l~~ 483 (505) T protein:vir:96 425 PRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVF--------DEIAWEEQLMRD---------KG----VNP 483 (505) T ss_pred cCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHH--------HHHHHHHHHHHH---------cC----CCC Confidence 888899999998877 77999999999999999998766333 344444322211 01 111 Q ss_pred CCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCc Q lcl|Aclame:pro 487 PTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDD 524 (629) Q Consensus 487 p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~ 524 (629) +.++.....+ ..+++...+. |+ T Consensus 484 ~~~~~~~~~~---~~~~~~~~~~-------------d~ 505 (505) T protein:vir:96 484 TPPEQESKDA---TTDEEDDSAS-------------DD 505 (505) T ss_pred CCCCCCCCCC---CCCCCCCCCC-------------CC Confidence 1111110000 0000000000 00 No 117 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=97.74 E-value=2.3e-06 Score=51.47 Aligned_cols=331 Identities=16% Similarity=0.173 Sum_probs=159.3 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCC---cccchhH---HHHHHHhhcchhhhhhhhhhhc Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSS---TRTDWQE---DAWKAYDAVGELRYYVGWRSSS 74 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~---~~~~WQ~---eAW~~~d~VgELryyvgWr~~s 74 (629) |.-. --|+++..++.+-...-+++++.. ..| +++.. ....|.. |||.. |+ || .-- T Consensus 1 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~p~~v~~~~~~~~~~~~~~~----~~--~~----~pp 61 (351) T protein:vir:79 1 MSKR---RSRAPRTFAAAPNPSAGSAAPARA----EVF--TFDDPTPVMNRAEILDYVECWSN----GE--WF----EPP 61 (351) T ss_pred CCCC---CCCCCCCCCCCCchhhhhccccee----EEE--EcCCceeecCcchhhhhhhhhhc----Cc--ee----cCC Confidence 3221 111211111111100111111111 011 00000 0001222 33311 21 21 111 Q ss_pred eeee---EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHh-cCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccc Q lcl|Aclame:pro 75 ASRV---RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQI-AGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLD 150 (629) Q Consensus 75 ~Sr~---rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~i-aGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d 150 (629) +++. +|+= ....+..+...+..-++..+ -..-+-+.++ ++++.++.+-|.+|+.++--..|+. T Consensus 62 ~~~~~la~~~~-----------~~~~h~~~l~~k~n~l~~~~~Pnp~~t~~~f-~~~v~d~ll~Gnay~~~~r~~~G~~- 128 (351) T protein:vir:79 62 VSFAGLAKSFR-----------ASTHHSSALFFKANVLASTFRPHRWLSRHAF-ERWALDFLTFGNGYLERRRNMVGGT- 128 (351) T ss_pred CCHHHHHHHHh-----------hhHhhhhhhhhhhhHHhhcccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCCE- Confidence 1100 0000 00000000011111111111 1223345555 6788899899999988863333321 Q ss_pred cCcccchhhheecHHHhccC--CCeeEEECCCCCCCcccCCCceEEEEeCCCcccccCCccchhhhHHHHHHHHhhhHHH Q lcl|Aclame:pro 151 SNGNPVPEWLALTPEEVRAS--EKKTIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTI 228 (629) Q Consensus 151 ~~~~~~~eW~~vt~~eI~~~--~~~~~i~lP~g~~h~~~~~~D~~~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I 228 (629) -+.+.|...-|... +++..+....|..++|.. +-||++=+|+|.....--||..++++++--=.-.++ T Consensus 129 ------~~L~~l~~~~v~~~~~~~~~~~~~~~g~~~~~~~--~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~-- 198 (351) T protein:vir:79 129 ------LRLEPALAKYVRRKADFSGFVYVNGWQERHEFEP--DSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTL-- 198 (351) T ss_pred ------EEEEEeCCcceeeeecCCeEEEEecCceEEEEcC--ccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHH-- Confidence 12344444445433 344455556666666653 335666678887777777898888877653222222 Q ss_pred HHHHHhHhhhCc-----eeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCcccccccccee Q lcl|Aclame:pro 229 ANASKSRLIGNG-----VVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMF 303 (629) Q Consensus 229 ~naa~SRL~gnG-----vlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIv 303 (629) -+.|+..|| ||.++... ......+.|.+.|-+ . . .....=.++ T Consensus 199 ---~~~~~f~NGa~pg~il~~~~~~---------------------ls~e~~~~lk~~~~~-~----~---G~~N~~~~~ 246 (351) T protein:vir:79 199 ---FRRKYYENGSHAGFILYMTDAA---------------------QKQDDVDNMRDALKN-A----K---GPGNFRNVF 246 (351) T ss_pred ---HHHHHHhccCCCceEEEecCCC---------------------CCHHHHHHHHHHHHH-h----c---CccccCcee Confidence 234555555 44443210 112244555555532 1 1 122233556 Q ss_pred eeechHHhcCceeEEeCCchh-HHHHHHHHHHHHHHhhhccCchHHhhccc--cCcchhhHhHHhhhhhhhhhhhHHHHH Q lcl|Aclame:pro 304 AAAPGELIKNVTHLKFDNQVT-EVAIKTRNDAIARLAMGLDVSPERLLGLG--SNSNHWSAWQIGDEDVRLHILPPVEML 380 (629) Q Consensus 304 a~vP~E~i~~ikhL~f~~dvt-e~aiktR~daIrrlA~~lD~~pE~LLGlg--~~~NhwsAw~i~de~v~~hI~P~~~~i 380 (629) +..|+..-+++|...++..-. .--+++|+-....||..+.||| .|+|+- +.+++.++.+....=++..|.|.++.| T Consensus 247 v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp-~llGi~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~i 325 (351) T protein:vir:79 247 MYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPP-QLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARF 325 (351) T ss_pred EecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCH-HHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHH Confidence 667776666777777754433 3357899999999999999999 888983 234566788888888889999999999 Q ss_pred HHHHHHHHHHHHHHhcCCChhheEeeecCcccccCCCch Q lcl|Aclame:pro 381 CEAITNQVLRTVLMREGIDPNAYVVWHDASQLTVDPDKT 419 (629) Q Consensus 381 ~~alt~~~lr~~Le~eG~d~~~yv~w~DaS~L~~~Pd~t 419 (629) .+ |.+ + | |. +|+-||..+|.--.-++ T Consensus 326 e~-ln~-~----l---g~----~~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 326 AE-LND-W----L---GD----EVVTFDDYEIPPAPVAA 351 (351) T ss_pred HH-HHh-h----c---Cc----ceeeeChhhhccccccC Confidence 65 443 2 3 32 24556666654332222 No 118 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=97.39 E-value=7.7e-05 Score=43.14 Aligned_cols=438 Identities=15% Similarity=0.130 Sum_probs=196.6 Q ss_pred CCCCc-ceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccc-------hhHHHHHHHhhcchhhhhhh-hh Q lcl|Aclame:pro 1 MAPTS-LRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTD-------WQEDAWKAYDAVGELRYYVG-WR 71 (629) Q Consensus 1 ma~t~-lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~-------WQ~eAW~~~d~VgELryyvg-Wr 71 (629) .+.-+ -+-.+|.+.-. . .++.-||+..-.. . +...+.+..++ =..+|-+++.--|=.+=++. |. T Consensus 8 i~~~sP~~~~~R~~ar~--~-~~~y~aa~~~r~~---~-~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 80 (502) T protein:vir:79 8 IGVFSPGWKAARLRSRA--V-IQAYEAVKTTRTH---K-ARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKLE 80 (502) T ss_pred HhhcChHHHHHHHhhHH--H-HhhccccCccccc---C-CCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 11100 00001111000 0 0122222211100 0 00111111111 23445555555554433333 66 Q ss_pred hhcee--eeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHh-----cCChhhHHHHHHHHhcceeecCceEEEEEEc Q lcl|Aclame:pro 72 SSSAS--RVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQI-----AGGALGQAQLIKRVVEQLTVAGETWVAILFT 144 (629) Q Consensus 72 ~~s~S--r~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~i-----aGG~lGQaqLlkr~~~~LtVpGE~wI~il~r 144 (629) .|.|. -.+|-+--..+| +...+ ....++.+.-+.- +.|.+-=.+|.+.+...+.+-||+.+.++.. T Consensus 81 ~nvVG~ggi~~~~~~~~~~-----~~~~~--~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~ 153 (502) T protein:vir:79 81 ERVVGKNGIIVEPHPVLRN-----GAIAR--DLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSG 153 (502) T ss_pred HhhccCCceeeeeccCCCC-----hhHHH--HHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeec Confidence 66664 223222221111 11111 1222233332222 6778878888888888899999999999876 Q ss_pred CCccc-ccCcccchhhheecHHHhccC---CCeeE--EEC--------------CCCC--CCcccC-CCceEEEEeCCCc Q lcl|Aclame:pro 145 DKSRL-DSNGNPVPEWLALTPEEVRAS---EKKTI--IEL--------------PTGD--KHEFRD-GLDGMFRVWNPRA 201 (629) Q Consensus 145 ~~~~~-d~~~~~~~eW~~vt~~eI~~~---~~~~~--i~l--------------P~g~--~h~~~~-~~D~~~RvW~P~P 201 (629) +.... +....+.. =..+..+-|... ++.+. |++ -+|+ ..++.. ...-|+|+++|.- T Consensus 154 ~~~~~~~g~~~~l~-lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r 232 (502) T protein:vir:79 154 RINSLTPSAGVHFW-LEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRR 232 (502) T ss_pred ccCccCCCcccceE-EEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccC Confidence 54321 11111110 012222222211 11000 111 0111 011100 1223677776542 Q ss_pred ccccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCce-eeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHH Q lcl|Aclame:pro 202 RRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGV-VFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQE 280 (629) Q Consensus 202 rra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGv-lfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ 280 (629) ---.---|..-++|..|+.|-. ...+....-.+.+-+ +||=.+. |....+...+ ++ . +. T Consensus 233 ~gQ~RGis~lapvl~~l~~l~~---~~dael~~a~i~A~~~~fi~~~~--~~~~~~~~~~---~~--~--~~-------- 292 (502) T protein:vir:79 233 LHQMRGTSLLSGVLIRLSALKE---YEDSELTAARIAAALGMYIRKGD--GQSYEPDGNG---SK--E--NE-------- 292 (502) T ss_pred CccccCCchHHHHHHHHHHHhH---HHHHHHHHHHHhhhheeeeecCC--CcccccccCC---CC--C--cc-------- Confidence 2222233555566666655543 334444443343332 2332221 2211111111 10 0 00 Q ss_pred HHHHHHhhcccCccccccccc--eeee-echHHhcCceeEEeCC--chhHHHHHHHHHHHHHHhhhccCchHHhhccccC Q lcl|Aclame:pro 281 LLFQVAQTAYDDEDSMAALIP--MFAA-APGELIKNVTHLKFDN--QVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSN 355 (629) Q Consensus 281 ml~qva~tAi~De~S~AA~vP--Iva~-vP~E~i~~ikhL~f~~--dvte~aiktR~daIrrlA~~lD~~pE~LLGlg~~ 355 (629) +.-+ +-| ||-. -||| .|+|-+ .-+.---.+-+..+|.+|.|++||-|.|+|= .+ T Consensus 293 -----------~~~~---l~pG~i~~~L~pGe------~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D-~s 351 (502) T protein:vir:79 293 -----------RELT---IQPGIIYDDLKPGE------EIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARN-YN 351 (502) T ss_pred -----------cccc---ccCCccccccCCCc------eeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcc-cc Confidence 0000 111 0111 2333 234422 1223345667788899999999999999996 45 Q ss_pred cchhhHhHHhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHhcCC------Chhhe--EeeecCcccccCCCchHHH-H Q lcl|Aclame:pro 356 SNHWSAWQIGDEDVRLHIL---PPVEMLCEAITNQVLRTVLMREGI------DPNAY--VVWHDASQLTVDPDKTDEA-R 423 (629) Q Consensus 356 ~NhwsAw~i~de~v~~hI~---P~~~~i~~alt~~~lr~~Le~eG~------d~~~y--v~w~DaS~L~~~Pd~t~eA-~ 423 (629) .|++|+-+-.-|..+.--. =+...+|+-|++.||.-++..-.| ++..| +-|.=+.-..+||-|.-+| + T Consensus 352 ~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~ 431 (502) T protein:vir:79 352 GTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWK 431 (502) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhcceeeecCCccccChHHHHHHHH Confidence 6999998777766543111 134568999999999888755333 33445 4588888899999998777 7 Q ss_pred HHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhhhhcccccCccCCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 424 DAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLAVLIPELADVEFPTPTVALPPAEEQDGDE 503 (629) Q Consensus 424 ~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~pll~~~~~~~~p~p~~a~~p~~~~~~~~ 503 (629) .+++.|..|-+.+-++.|.+-++.+ +|.|.+.-..+- .++.++..+...+...+++++ T Consensus 432 ~~i~~Gl~t~~~~~a~~G~D~~~v~--------~q~a~e~~~~~~-------------~Gl~~~~~~~~~~~~~~~~~~- 489 (502) T protein:vir:79 432 IQIRGGAATESDWVRAGGRNPDDVK--------RRRKAEIDENRK-------------LDLVFDTDPASDKGGSSAATK- 489 (502) T ss_pred HHHHcCCCCHHHHHHHcCCCHHHHH--------HHHHHHHHHHHH-------------cCCCCCCCCCCCCCCCCCCCC- Confidence 7999999999999999998766333 344444322211 123333322222211111111 Q ss_pred cCCCCCCCCCCCCCCCCCCC Q lcl|Aclame:pro 504 EASGASRREEPDTEDDAGTD 523 (629) Q Consensus 504 e~~~~~~~~ePdTe~d~~~d 523 (629) ++||...+++.++ T Consensus 490 -------~~e~~~~~~~~e~ 502 (502) T protein:vir:79 490 -------RQEPQHTDDQSEE 502 (502) T ss_pred -------CCCCCCCCCCCCC Confidence 1112222222221 No 119 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=93.65 E-value=0.0068 Score=32.46 Aligned_cols=447 Identities=15% Similarity=0.140 Sum_probs=165.7 Q ss_pred CCCCcc--e-------------------------e----EEcCCCCCCCcccc---eeeecccccCcccchhhhhc---c Q lcl|Aclame:pro 1 MAPTSL--R-------------------------I----VRRPKSEPVSTRQR---ALVAASQPVENPGKAFRKAM---G 43 (629) Q Consensus 1 ma~t~l--r-------------------------~----vr~pk~~~~~~r~r---~l~aAsa~~~~~~~~~kk~~---~ 43 (629) ||-|.- | . ...|.+-.|..|.. .|+.-+..-+ .+.|.+. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~---~~~~~~~~~~~ 77 (532) T protein:vir:94 1 MADTDPTPRPEITYATLQQAQRVDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQT---GRNGRNALSFV 77 (532) T ss_pred CCCCCCCCCcceehhhhhhHhhhhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCc---ccccccccccc Confidence 433310 0 0 11111111111000 0111101111 1111110 0 Q ss_pred -CCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHH Q lcl|Aclame:pro 44 -SSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQ 122 (629) Q Consensus 44 -~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaq 122 (629) .......|-. .+|..-++.|=+|.=.+.-|-|-=.-...-+.+ .+++ ..-.++..-.+.+ .=-+ T Consensus 78 ~~~~~~~~~l~--a~Y~~~~l~r~~Vd~~aed~~r~~~~i~~~~~~------~~~~--~~~~~i~~~~~~l-----~v~~ 142 (532) T protein:vir:94 78 EATSWPGFPTL--ALLAQLPEYRTMHETPADECVRAWGKITCSSKD------ELAA--DKATRITQKLEQY-----NVRT 142 (532) T ss_pred cccccchHHHH--HHHHcCchhhhhhccchHHHhhCCceEeeCCcc------ccch--HHHHHHHHHHHhh-----hHHH Confidence 0001112222 345445555555555555555433222221100 0111 1111222222222 1123 Q ss_pred HHHHHhcceeecCceEEEEEEcCCcccccCcccchhhheecHHHhccCC-CeeE----------------EECCC-CCCC Q lcl|Aclame:pro 123 LIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWLALTPEEVRASE-KKTI----------------IELPT-GDKH 184 (629) Q Consensus 123 Llkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~~vt~~eI~~~~-~~~~----------------i~lP~-g~~h 184 (629) .|+.+...--+=|-+.|+|+.+.++...+-.. =+.|..+-|+++. ++.. ..-|+ |.+- T Consensus 143 ~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~----p~~l~~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~ 218 (532) T protein:vir:94 143 LVRTVVIHDQAYGGAHVFPHLKMDGDSVPADA----PLLLSPSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPD 218 (532) T ss_pred HHHHHHHhhhcccceEEEEEeccCCccccccc----cccccccccccceeeEEEeechheecccccccccccccccCCce Confidence 34444444457899999998875553221100 0011111222211 0000 00011 1111 Q ss_pred ccc--CC----CceEEEE-eCCCccccc-----CCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCc Q lcl|Aclame:pro 185 EFR--DG----LDGMFRV-WNPRARRAR-----EPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPS 252 (629) Q Consensus 185 ~~~--~~----~D~~~Rv-W~P~Prra~-----eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~ 252 (629) .|. .+ -+.||++ =+|-|...+ --.|=.+.+++.|.=..++...+.....+ ..+.++ .+.+-. T Consensus 219 ~y~v~~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~----~~~~v~--k~~~a~ 292 (532) T protein:vir:94 219 SWIATSGKKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDNWLRTRQSVSDTVKQ----FSMTNL--ATDMAQ 292 (532) T ss_pred eEEEccCeeeccceEEEecCCCchhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcee--eechHH Confidence 111 11 2224443 234443322 34677778888887776666665442222 111111 011100 Q ss_pred ccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHHHHHHHH Q lcl|Aclame:pro 253 MNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRN 332 (629) Q Consensus 253 ~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~ 332 (629) .. .....+.|++-+-.+.+ +++- .=.+++....|.++.++ +.|. +++++--. T Consensus 293 -----------~l-----s~~~~~~~~~r~~~~~~--~~~n-----~g~~~id~~~e~~e~~~-~~ls-gl~~~l~~--- 344 (532) T protein:vir:94 293 -----------LL-----APGGAQSLDARLQLFNL--YRDN-----RNIGALDKGTEEIQQTN-TPLS-GLDSLQAQ--- 344 (532) T ss_pred -----------hh-----cchhHHHHHHHHHHHHh--hcCC-----ccceEEcCCCceeEEEe-cccC-CHHHHHHH--- Confidence 00 00112333333221111 1221 11234444446666665 6675 67776544 Q ss_pred HHHHHHhhhccCchHHhhccccC-cc-----hhhHhHHhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHhcCC-ChhheE Q lcl|Aclame:pro 333 DAIARLAMGLDVSPERLLGLGSN-SN-----HWSAWQIGDEDVR-LHILPPVEMLCEAITNQVLRTVLMREGI-DPNAYV 404 (629) Q Consensus 333 daIrrlA~~lD~~pE~LLGlg~~-~N-----hwsAw~i~de~v~-~hI~P~~~~i~~alt~~~lr~~Le~eG~-d~~~yv 404 (629) +...||-+++||--+|+|.... -| --..|--.=+.+| ..+.|+++.|.+-|.+. .+ |. +++=++ T Consensus 345 -~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s----~~---g~~~~d~~~ 416 (532) T protein:vir:94 345 -SQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLS----EY---GQIDPGLAW 416 (532) T ss_pred -HHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc---CCCCCCceE Confidence 4447999999999889885211 11 1122332333344 23567766666555432 22 44 444344 Q ss_pred eeecCcccccCC--Cch-------HHHHHHHHcCCCCHHHHHHHhCCCcccccCCCCHHHHHHHHHHHHhcCcchhhhhh Q lcl|Aclame:pro 405 VWHDASQLTVDP--DKT-------DEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTLA 475 (629) Q Consensus 405 ~w~DaS~L~~~P--d~t-------~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~tt~Eg~~q~a~d~v~~~P~Li~~l~ 475 (629) .|-+ |-+-. ++. +.+..+++.|+|+.+++|.++|.+...+|+...++.-. +...+..+.- T Consensus 417 ~f~p---L~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~-- 485 (532) T protein:vir:94 417 EWSP---LMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDE------LDDVEEIAKQ-- 485 (532) T ss_pred EeCC---CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccc------cccccchhhh-- Confidence 4543 43221 222 22245899999999999999999988877654333100 0000000000 Q ss_pred hhcccccCccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCcccCCCC Q lcl|Aclame:pro 476 VLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQASL 530 (629) Q Consensus 476 pll~~~~~~~~p~p~~a~~p~~~~~~~~e~~~~~~~~ePdTe~d~~~d~~~~a~~ 530 (629) ........|.+.+..+ ....+.+..+..+.|+...++...+.+-.+. T Consensus 486 ---~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:94 486 ---LMAAALNPPATAPQTP-----NPQPDSEDDQTDNQPDAQADPAQNDQPVGNR 532 (532) T ss_pred ---hcccccCCCCCCCCCC-----CCCCCCCCCCCCCccCCCccccccCCCcCCC Confidence 0000011111110000 0001111111111222221111111111111 No 120 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=91.67 E-value=0.015 Score=30.62 Aligned_cols=430 Identities=12% Similarity=0.073 Sum_probs=165.0 Q ss_pred CCC----------C-ccee------EEcCCCCCCCcccceeee--cccccCcccchhhhhccCCcccchhH--------- Q lcl|Aclame:pro 1 MAP----------T-SLRI------VRRPKSEPVSTRQRALVA--ASQPVENPGKAFRKAMGSSTRTDWQE--------- 52 (629) Q Consensus 1 ma~----------t-~lr~------vr~pk~~~~~~r~r~l~a--Asa~~~~~~~~~kk~~~~~~~~~WQ~--------- 52 (629) |++ + .++. ++.|...-+ ++.-++.. |..-..+....|....+....+.+.. T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (537) T protein:vir:10 25 VGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMM-PKVDGSHPDMAMDGLDVEGGTFSAYANPNLSEGLVLWYAQQAFIG 103 (537) T ss_pred cCCCcccchhhHHHHHHhhhhccCCCCCccCccc-ccccccccchhccccccchhhhhhhccccccchhhhhccccCCcc Confidence 222 1 1111 112222112 12122222 11222233333322211111111110 Q ss_pred -HHHHHHhhcchhhhhhhhhhhceeee-EEEEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcc Q lcl|Aclame:pro 53 -DAWKAYDAVGELRYYVGWRSSSASRV-RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQ 130 (629) Q Consensus 53 -eAW~~~d~VgELryyvgWr~~s~Sr~-rL~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~ 130 (629) +.=.+|..-++.|=+|.=.+.-|-|. +-+-++ | .++..-..++.|-+.+- .+.=-+.|+.+... T Consensus 104 ~~l~a~Y~~~~l~r~iVd~~A~d~~r~~~~i~~~-~-----------~~~~~~~~~~~l~~~~~--~l~~~~~l~~a~~~ 169 (537) T protein:vir:10 104 HQMCALIATHWLVNKACSQMPRDAMRKGYKIISD-D-----------GNELDPKDAKFIDRYDR--AFNIKKHAIQFVRK 169 (537) T ss_pred HHHHHHHHhCchhhhhhhhhhHHhhcCCceeecC-C-----------cccccHHHHHHHHHHHH--HhhHHHHHHHHHHh Confidence 11134544555555555555544332 222111 1 00111123333333222 23334556666666 Q ss_pred eeecCceEEEEEEcCCcccccCc----cc-----------c-hhhheec-HHHhccCCCeeEEECCC-CCCCccc-CC-- Q lcl|Aclame:pro 131 LTVAGETWVAILFTDKSRLDSNG----NP-----------V-PEWLALT-PEEVRASEKKTIIELPT-GDKHEFR-DG-- 189 (629) Q Consensus 131 LtVpGE~wI~il~r~~~~~d~~~----~~-----------~-~eW~~vt-~~eI~~~~~~~~i~lP~-g~~h~~~-~~-- 189 (629) --+=|-++|+|+...++...++. .. . ..|.... ..++..... -|+ |.+..|. .+ T Consensus 170 ~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~k~l~vidp~~~~~~~~~~~~~dp~-----sp~fg~P~~y~v~g~~ 244 (537) T protein:vir:10 170 GRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAYKGIVQIDPYWCAPLLDAQASSNPV-----SMHFYEPTYWLINGKK 244 (537) T ss_pred cccccceEEEEeecCcCCcccccccccccccccceeEEEEechhhcccccchhhhccCC-----ccccCCceeeeecCeE Confidence 66779999998875333222111 00 0 0011111 111111100 000 1111110 11 Q ss_pred --CceEEEE-eCCCcc-----cccCCccchhhhHHHHHHHHhhhHHHHHHHHhHhhhCceeeecCCccCCcccCCCcCCC Q lcl|Aclame:pro 190 --LDGMFRV-WNPRAR-----RAREPDSPVRANLDSLKEIVRTTKTIANASKSRLIGNGVVFVPHEMSLPSMNAPVASNK 261 (629) Q Consensus 190 --~D~~~Rv-W~P~Pr-----ra~eaDSPVRa~ld~LrEI~rttk~I~naa~SRL~gnGvlfvPqe~slP~~~ap~~~~~ 261 (629) -+.||+. =+|-|. ...--.|-.+.+++.|.=..++...+..... ..+-.+| .+.+... T Consensus 245 iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~---~~~~~v~---k~~~~~~-------- 310 (537) T protein:vir:10 245 YHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMERVYAAERTANEGPMLAM---TKRQTVL---KVDAAQV-------- 310 (537) T ss_pred ecceeEEEecCCCCchhhhcccCcccccHHHHHHHHHHHHHHHHHHHHHHHH---hcCCcee---eechHHh-------- Confidence 1224443 112122 2223477788888887766666554433222 1111111 0111000 Q ss_pred CCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechHHhcCceeEEeCCchhHHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 262 PGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHLKFDNQVTEVAIKTRNDAIARLAMG 341 (629) Q Consensus 262 pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E~i~~ikhL~f~~dvte~aiktR~daIrrlA~~ 341 (629) ..+ .++|.+-+..+. .++|-.. .+++.-.+|.+..++ ..|+ ++++ +.+.+...+|.. T Consensus 311 -------l~~---~~~~~~r~~~~~--~~r~n~g-----~~~id~e~e~~e~~~-~~ls-gl~~----~l~~~~~~iAa~ 367 (537) T protein:vir:10 311 -------LAN---KQQFDETMSWWT--ATRDNYQ-----VRVVDKDNEDVVQID-TTLN-DLDK----VIMNQYQLVCAI 367 (537) T ss_pred -------hcC---HHHHHHHHHHHH--hhcCCcc-----eeEecCCCceeEEEe-ccCC-CHHH----HHHHHHHHHHhh Confidence 011 123433332222 2233111 144444456555544 4453 4554 456666779999 Q ss_pred ccCchHHhhcccc-Ccc-----hhhHhHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhe-EeeecCccccc Q lcl|Aclame:pro 342 LDVSPERLLGLGS-NSN-----HWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMREGIDPNAY-VVWHDASQLTV 414 (629) Q Consensus 342 lD~~pE~LLGlg~-~~N-----hwsAw~i~de~v~~hI~P~~~~i~~alt~~~lr~~Le~eG~d~~~y-v~w~DaS~L~~ 414 (629) ++||--+|+|... ..| --..|--.=+.+|-++.|.++.|.+-|.+..+ | .+..| +.| .+|.+ T Consensus 368 ~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~-------~-~~~~~~i~f---~pL~~ 436 (537) T protein:vir:10 368 ARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHL-------R-KRIRVKVEF---PPMDA 436 (537) T ss_pred hCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C-CCcceEEEe---CCCCC Confidence 9999988988521 122 22334433355566778888877655544322 2 22333 223 44433 Q ss_pred CC--Cch-------HHHHHHHHcCCCCHHHHHHHhCCCcccccCCC----CHHHHHHHHHHHHhcCcchhhhhhhhcccc Q lcl|Aclame:pro 415 DP--DKT-------DEARDAFDRGAITAEAMVKMLGLADDTVYDFT----TPEGWAQWARDRVGQDPNLLPTLAVLIPEL 481 (629) Q Consensus 415 ~P--d~t-------~eA~~~~~~G~it~ealr~~~Gl~ed~~yd~t----t~Eg~~q~a~d~v~~~P~Li~~l~pll~~~ 481 (629) -- ++. +....+++.|+|+.+++|.+++-+.+.+|+-- +.|... T Consensus 437 ~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e------------------------ 492 (537) T protein:vir:10 437 PKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAE------------------------ 492 (537) T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhh------------------------ Confidence 22 222 23456999999999999999998777666421 111000 Q ss_pred cCccCCCCCCCCCCCCCC---CCCCcCCCCC-CCCCCCCCCCCCCCcccCCCCC Q lcl|Aclame:pro 482 ADVEFPTPTVALPPAEEQ---DGDEEASGAS-RREEPDTEDDAGTDDSDQASLD 531 (629) Q Consensus 482 ~~~~~p~p~~a~~p~~~~---~~~~e~~~~~-~~~ePdTe~d~~~d~~~~a~~~ 531 (629) +.+.+... ++.+.. +...+..+.. ++.+++.. ..+.++..+ T Consensus 493 ---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~ 537 (537) T protein:vir:10 493 ---DIDVDDEG-KPVRIIEDQPAPSEMFGATSSGESANDP-----RDSGAAFED 537 (537) T ss_pred ---cccCCccC-CcCCCCCCCCCccccCCCCccccccCCC-----ccCccccCC Confidence 00000000 000000 0000000000 00001110 011111111 No 121 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=48.53 E-value=0.67 Score=21.55 Aligned_cols=242 Identities=8% Similarity=0.025 Sum_probs=116.8 Q ss_pred CCCCcceeEEcCCCCCCCcccceeeecccccCcccchhhhhccCCcccchhHHHHHHHhhcchhhhhhhhhhhceeeeEE Q lcl|Aclame:pro 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) Q Consensus 1 ma~t~lr~vr~pk~~~~~~r~r~l~aAsa~~~~~~~~~kk~~~~~~~~~WQ~eAW~~~d~VgELryyvgWr~~s~Sr~rL 80 (629) |.=-..+- .|....++.. ....+. .+. ++.+...... +.... + ..+-+.=.+.=++++++++-| T Consensus 1 MglF~~~~-~r~~~~~~~~-------~~~~~~----~~~-~~~~~~~~~v-~~~~a-l-~~~~v~~~i~~ia~~iA~lp~ 64 (251) T protein:vir:46 1 MGIFYKNE-KRDLQYNEDD-------LQMMVQ----TLP-SFQGTKLRQY-KDIEA-I-RHSDIFTAVMMIASDLARMPI 64 (251) T ss_pred CCcccccc-ccccCCCccc-------hhhhhh----hhc-cccCcCccee-chhhh-h-ccHHHHHHHHHHHHhHhhCce Confidence 55432221 1111111100 000000 000 0001111111 00000 1 233344556778888888877 Q ss_pred EEEeecCCCCCCCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHhcceeecCceEEEEEEcCCcccccCcccchhhh Q lcl|Aclame:pro 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) Q Consensus 81 ~aseiD~DtG~ptg~~~~~~~~~~r~~~iv~~iaGG~lGQaqLlkr~~~~LtVpGE~wI~il~r~~~~~d~~~~~~~eW~ 160 (629) ..-+ + +.. ..++ .+..+...=-.--+...++++.++.++-+-|++|+.+.-...|+ ..+++ T Consensus 65 ~~~~---~-~~~--~~~~------~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~-------~~~L~ 125 (251) T protein:vir:46 65 RVTV---N-GQI--NYSD------RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGE-------PMNLT 125 (251) T ss_pred EEee---C-ccc--cccc------hHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCc-------EEEEE Confidence 6643 1 110 1112 34555543334455567999999999999999999886433443 22355 Q ss_pred eecHHHhcc--CCCee-E--EEC---CCCCCCcccCCCceE-EEEeCCCcccccCCccchhhhHHHHHHHHhhhHHHHHH Q lcl|Aclame:pro 161 ALTPEEVRA--SEKKT-I--IEL---PTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANA 231 (629) Q Consensus 161 ~vt~~eI~~--~~~~~-~--i~l---P~g~~h~~~~~~D~~-~RvW~P~Prra~eaDSPVRa~ld~LrEI~rttk~I~na 231 (629) .|.++.|.. ..++. . +.. +.+.........|++ ||..+. ....--||+.++.+.|.-..-+.+...+. T Consensus 126 ~i~~~~v~v~~~~~g~~~~~~~~~~~~~~g~~~~~~~~diiH~r~~~~---dg~~G~spi~~~~~~i~~~~~~~~~~~~~ 202 (251) T protein:vir:46 126 FRKTSEIELKSDARGRLYYFHQRIDSNGNNIERNVKFEDMLDIKFYSL---DGINGLSLLDTLSRTIESDNNGKDFLNNF 202 (251) T ss_pred EECCceEEEEECCCCcEEEEEEEeccCCcceeEEECCccEEEecCcCC---CCeeecCHHHHHHHHHHHHHHHHHHHHHH Confidence 555555442 22211 1 111 111222223344555 664432 23567899999999998888888888888 Q ss_pred HHhHhhhCceeeecCCccCCcccCCCcCCCCCccccccCCchhHHHHHHHHHHHHhhcccCccccccccceeeeechH Q lcl|Aclame:pro 232 SKSRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGE 309 (629) Q Consensus 232 a~SRL~gnGvlfvPqe~slP~~~ap~~~~~pG~~~p~~~~~~a~~~L~~ml~qva~tAi~De~S~AA~vPIva~vP~E 309 (629) .+.-..-.|||-+|+.++= ..+.+.|++.+.+ ++.-.+. +..|++ +..| T Consensus 203 f~ng~~p~gil~~~~~l~~---------------------~e~~~~~~~~~~~----~~~g~~n-~g~~~~---gm~~ 251 (251) T protein:vir:46 203 LRNGTHAGGILKMKGVLDN---------------------KKARDRAREEFPK----VLVELNK-LGKLSY---SMNQ 251 (251) T ss_pred HHccCCCcEEEEeCCCCCC---------------------HHHHHHHHHHHHH----HhcCccc-cccccc---ccCC Confidence 8887777889988876541 1122334444432 2221111 112222 3333 Done!