BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:47|NCBI_annot:major tail shaft protein|genbank:acc:NP_463473;swissprot:trembl:q9t1b1;genbank:gi:16798 795;uniprot:Q9T1B1;genbank:GeneID:922387 (144 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|15846|lcl|protein:vir:47 Length: 144 # NCBI annotation: major... 295 2e-82 gi|13029|lcl|protein:vir:80923 Length: 145 # NCBI annotation: Ts... 276 1e-76 gi|19303|lcl|protein:vir:4792 Length: 149 # NCBI annotation: put... 105 3e-25 gi|16310|lcl|protein:vir:3038 Length: 161 # NCBI annotation: tai... 99 3e-23 gi|16036|lcl|protein:vir:9825 Length: 161 # NCBI annotation: put... 99 3e-23 gi|5806|lcl|protein:vir:98876 Length: 152 # NCBI annotation: tai... 93 1e-21 gi|646|lcl|protein:vir:1579 Length: 178 # NCBI annotation: minor... 27 0.090 gi|8571|lcl|protein:vir:100083 Length: 152 # NCBI annotation: gp... 25 0.41 gi|13942|lcl|protein:vir:1439 Length: 152 # NCBI annotation: put... 25 0.46 gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hyp... 25 0.50 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 21 5.6 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 21 5.6 >gi|15846|lcl|protein:vir:47 Length: 144 # NCBI annotation: major tail shaft protein # Family: family:all:900 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463473;swissprot:trembl:q9t1b1;genbank:gi :16798795;uniprot:Q9T1B1;genbank:GeneID:922387 Length = 144 Score = 295 bits (754), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 MRIKNAKTKYSVAEIVAGAGEPDWKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVLG 60 MRIKNAKTKYSVAEIVAGAGEPDWKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVLG Sbjct: 1 MRIKNAKTKYSVAEIVAGAGEPDWKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVLG 60 Query: 61 YSEAYTFEGTHDREDEAQNLIVAKRRTPENRSIMFKIEIPDTETAIGKATVSEIKGSAGG 120 YSEAYTFEGTHDREDEAQNLIVAKRRTPENRSIMFKIEIPDTETAIGKATVSEIKGSAGG Sbjct: 61 YSEAYTFEGTHDREDEAQNLIVAKRRTPENRSIMFKIEIPDTETAIGKATVSEIKGSAGG 120 Query: 121 GDATEFPAFGCRIAYDETPTVTKP 144 GDATEFPAFGCRIAYDETPTVTKP Sbjct: 121 GDATEFPAFGCRIAYDETPTVTKP 144 >gi|13029|lcl|protein:vir:80923 Length: 145 # NCBI annotation: Tsh # Family: family:all:900 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468398;genbank:gi:157324972;genbank:Ge neID:5601356 Length = 145 Score = 276 bits (705), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 135/143 (94%), Positives = 136/143 (95%) Query: 2 RIKNAKTKYSVAEIVAGAGEPDWKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVLGY 61 RIKNAKTKY VAEIV G GEP WKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVLGY Sbjct: 3 RIKNAKTKYFVAEIVDGVGEPVWKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVLGY 62 Query: 62 SEAYTFEGTHDREDEAQNLIVAKRRTPENRSIMFKIEIPDTETAIGKATVSEIKGSAGGG 121 SEAYTFEGTHDREDEAQNLIVAKRRTPENR IMFKIEIPDTETA+GKATVSEIKGSAGGG Sbjct: 63 SEAYTFEGTHDREDEAQNLIVAKRRTPENRGIMFKIEIPDTETAVGKATVSEIKGSAGGG 122 Query: 122 DATEFPAFGCRIAYDETPTVTKP 144 DATEFPAF CRIAYDETP VTKP Sbjct: 123 DATEFPAFACRIAYDETPKVTKP 145 >gi|19303|lcl|protein:vir:4792 Length: 149 # NCBI annotation: putative major tail shaft protein # Family: family:all:900 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150172;swissprot:trembl:q94m39;genbank:gi :15088783;uniprot:Q94M39;genbank:GeneID:956012 Length = 149 Score = 105 bits (261), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/146 (43%), Positives = 91/146 (62%), Gaps = 7/146 (4%) Query: 2 RIKNAKTKYSVAEIVAG---AGEPDWKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVV 58 R KNA + VA G + E W L+KWI++VSDD + T++Q YDGDG E+T V Sbjct: 3 RQKNALRGHFVAPYNGGTEPSTEDTWLELAKWISDVSDDTDEKTDDQAYYDGDGVEETTV 62 Query: 59 LGYSEAYTFEGTHDREDEAQNLIVA-KRRTPENRSIMFKIEIPDTETA-IGKATVSEIKG 116 + AYTFEGT+D +D+AQ LI K +T ++R + K+ D + +G AT +EIK Sbjct: 63 VSVKGAYTFEGTYDPDDKAQALIAGMKYKTGDDRKLWHKVVSSDRKKQWVGAATATEIK- 121 Query: 117 SAGGGDATEFPAFGCRIAYDETPTVT 142 AG G A+++ AFGC+++Y+ TP T Sbjct: 122 -AGSGAASDYEAFGCKLSYNSTPKET 146 >gi|16310|lcl|protein:vir:3038 Length: 161 # NCBI annotation: tail protein # Family: family:all:900 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438151;genbank:gi:16271814;genbank:GeneID :929244 Length = 161 Score = 98.6 bits (244), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 9/150 (6%) Query: 1 MRIKNAKTKYSVAEIVAGAGEPDWKR-----LSKWITNVSDDGSDNTEEQGDYDGDGNEK 55 MR KNA + +A V G + + + L++WI ++SDD + TE++ YDGDG E+ Sbjct: 1 MRQKNALRGHFIAPYVKGEEKTEVTKEKLLELARWIKDISDDTDEKTEDEAYYDGDGTEE 60 Query: 56 TVVLGYSEAYTFEGTHDREDEAQNLIVA-KRRTPENRSIMFKIEIPDTETA-IGKATVSE 113 T V+G AYTFEGT+D ED+AQ I + K + + R + I D +T +G ATV+E Sbjct: 61 TTVVGVKGAYTFEGTYDPEDKAQAHIASLKYKLGDERKVWHLIVSADGKTQWLGVATVTE 120 Query: 114 IKGSAGGGDATEFPAFGCRIAYDETPTVTK 143 I AG G A +F AFGC+I Y+ P +K Sbjct: 121 I--IAGSGAAADFEAFGCKITYNSLPKESK 148 >gi|16036|lcl|protein:vir:9825 Length: 161 # NCBI annotation: putative major tail shaft protein # Family: family:all:900 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795587;genbank:gi:28876334;genbank:GeneID :1257909 Length = 161 Score = 98.6 bits (244), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 9/150 (6%) Query: 1 MRIKNAKTKYSVAEIVAGAGEPDWKR-----LSKWITNVSDDGSDNTEEQGDYDGDGNEK 55 MR KNA + +A V G + + + L++WI ++SDD + TE++ YDGDG E+ Sbjct: 1 MRQKNALRGHFIAPYVKGEEKTEVTKEKLLELARWIKDISDDTDEKTEDEAYYDGDGTEE 60 Query: 56 TVVLGYSEAYTFEGTHDREDEAQNLIVA-KRRTPENRSIMFKIEIPDTETA-IGKATVSE 113 T V+G AYTFEGT+D ED+AQ I + K + + R + I D +T +G ATV+E Sbjct: 61 TTVVGVKGAYTFEGTYDPEDKAQAHIASLKYKLGDERKVWHLIVSADGKTQWLGVATVTE 120 Query: 114 IKGSAGGGDATEFPAFGCRIAYDETPTVTK 143 I AG G A +F AFGC+I Y+ P +K Sbjct: 121 I--IAGSGAAADFEAFGCKITYNSLPKESK 148 >gi|5806|lcl|protein:vir:98876 Length: 152 # NCBI annotation: tail shaft protein # Family: family:all:900 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164424;genbank:gi:56694914;genbank:GeneID :3197266 Length = 152 Score = 93.2 bits (230), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 56/142 (39%), Positives = 83/142 (58%), Gaps = 6/142 (4%) Query: 2 RIKNAKTKYSVAEIVAGAGEP--DWKRLSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVL 59 R+KNA+ ++ V G EP DW L+K+I+ + DD ++ TE++ YDGDG +T V+ Sbjct: 3 RLKNAERQHFVQAYEPGQDEPGEDWLELAKYISTIGDDTNEETEDEAFYDGDGTPETTVI 62 Query: 60 GYSEAYTFEGTHDREDEAQNLIVA-KRRTPENRSIMFKIEIPDTETA-IGKATVSEIKGS 117 ++ YT EG +D ED AQ LI K +T + R I ++ D + +G+ATVS I Sbjct: 63 SVAQGYTPEGYYDPEDPAQALIAGLKYKTGDGRKIWHRVVRSDGKKEWVGRATVSSI--V 120 Query: 118 AGGGDATEFPAFGCRIAYDETP 139 AG GDA+ + F C I +D P Sbjct: 121 AGAGDASAYETFSCNIRFDRIP 142 >gi|646|lcl|protein:vir:1579 Length: 178 # NCBI annotation: minor capsid protein # Family: family:all:900 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695161;swissprot:trembl:o03972;genbank:gi :23455808;goa:O03972;interpro:IPR002813;uniprot:O03972;g enbank:GeneID:955560 Length = 178 Score = 27.3 bits (59), Expect = 0.090, Method: Compositional matrix adjust. Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 3/117 (2%) Query: 27 LSKWITNVSDDGSDNTEEQGDYDGDGNEKTVVLGYSEAYTFEGTHDREDEAQNLIVAK-R 85 L+ I+ V+ ++ + YDG G T V G F G D AQ+ + +K Sbjct: 33 LAAGISGVTPAANETDDNTAYYDGAGFTDTDVTGKRITLAFSGHRVIGDAAQDYVASKFL 92 Query: 86 RTPENRSIMFKIEIPDTETAIGKATVSEIKGSAGGGDATEFPAFGCRIAYDETPTVT 142 E+ + + PD + T++ I G +A + F ++++ P +T Sbjct: 93 AIGESLKTLARWTDPDGNKIVSNVTITAIVPMGGNANAKQ--TFSFTLSFNGKPIMT 147 >gi|8571|lcl|protein:vir:100083 Length: 152 # NCBI annotation: gp11 # Family: family:all:628 # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945041;genbank:gi:38707901;genbank:GeneID :2744130 Length = 152 Score = 25.0 bits (53), Expect = 0.41, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 65 YTFEGTHDREDEAQNLIVAKRRTPENRSIMFKIEIPD 101 ++ +G + DE QN++ A R T E +F++ D Sbjct: 75 FSVDGNYQSNDEGQNILRAARATGEK--YVFRVTFAD 109 >gi|13942|lcl|protein:vir:1439 Length: 152 # NCBI annotation: putative major tail subunit protein # Family: family:all:628 # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536368;genbank:gi:17975173;genbank:GeneID :929142 Length = 152 Score = 25.0 bits (53), Expect = 0.46, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Query: 65 YTFEGTHDREDEAQNLIVAKRRTPENRSIMFKIEIPD 101 ++ +G + DE QN++ A R T E +F++ D Sbjct: 75 FSVDGNYQSNDEGQNILRAARATGEK--YVFRVTFAD 109 >gi|5072|lcl|protein:vir:95130 Length: 531 # NCBI annotation: hypothetical protein ORF006 # Family: family:all:144 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293413;genbank:gi:148912834;genbank:Ge neID:5228205 Length = 531 Score = 24.6 bits (52), Expect = 0.50, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 6/47 (12%) Query: 22 PDWKRLSKWITNVSDDGSDNTEEQGDY-DGDGNEKTVVLGYSEAYTF 67 P W+ I DDGS + G + + DG E T+VL +TF Sbjct: 310 PSWR-----IDRTYDDGSSHPFSVGWWAEADGTEATIVLSDGTEFTF 351 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 21.2 bits (43), Expect = 5.6, Method: Compositional matrix adjust. Identities = 11/27 (40%), Positives = 13/27 (48%) Query: 74 EDEAQNLIVAKRRTPENRSIMFKIEIP 100 ED A +I A+R P N I IP Sbjct: 271 EDLAGKVIAAERSLPRNERTWRVINIP 297 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 21.2 bits (43), Expect = 5.6, Method: Compositional matrix adjust. Identities = 11/27 (40%), Positives = 13/27 (48%) Query: 74 EDEAQNLIVAKRRTPENRSIMFKIEIP 100 ED A +I A+R P N I IP Sbjct: 271 EDLAGKVIAAERSLPRNERTWRVINIP 297 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.309 0.130 0.373 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,320 Number of Sequences: 514 Number of extensions: 3393 Number of successful extensions: 20 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 15 length of query: 144 length of database: 206,069 effective HSP length: 64 effective length of query: 80 effective length of database: 173,173 effective search space: 13853840 effective search space used: 13853840 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 33 (17.3 bits)