Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : VP2 | Genbank acc : NC_005879 | Aclame index mge :1624

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	8	lcl\|Aclame:protein:vir:102655\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Portal	4	lcl\|Aclame:protein:vir:102668\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
TermL	3	lcl\|Aclame:protein:vir:102661\|NCBI_annot:terminase\|genbank:acc:YP_024418;genbank:gi:48696639;genbank	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	16	lcl\|Aclame:protein:vir:102653\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Hc3	15	lcl\|Aclame:protein:vir:102644\|NCBI_annot:Hypothetical	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:102655 protein:vir:103323 protein:vir:94576	VP2 Era103 Berlin	100 % 16 % 15 %
Portal	protein:vir:102668 protein:vir:107822 protein:vir:98506	VP2 BIP-1 BMP-1	100 % 25 % 25 %
TermL	protein:vir:102661 protein:vir:344 protein:vir:105593	VP2 Mx8 F116	100 % 22 % 17 %
Ad3	protein:vir:102653	VP2	100 %
Hc3	protein:vir:102644 protein:vir:95324 protein:vir:7329	VP2 phiV10 epsilon15	100 % 20 % 20 %