BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:4781|NCBI_annot:putative large terminase subunit|genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi:15088 772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:955976 (436 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: put... 912 0.0 gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: ter... 580 e-167 gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: Te... 452 e-129 gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putat... 446 e-127 gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putat... 426 e-121 gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: pu... 134 3e-33 gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF... 132 6e-33 gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF... 132 6e-33 gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: OR... 131 2e-32 gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF... 131 2e-32 gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF... 131 2e-32 gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: p... 130 3e-32 gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF... 129 5e-32 gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hyp... 121 2e-29 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 119 7e-29 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 79 8e-17 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 77 3e-16 gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: Te... 75 1e-15 gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: put... 75 2e-15 gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF... 71 2e-14 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 68 2e-13 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 66 9e-13 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 66 1e-12 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 65 1e-12 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 65 2e-12 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 65 2e-12 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 65 2e-12 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 65 2e-12 gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: put... 64 3e-12 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 61 3e-11 gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: con... 59 2e-10 gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: Ter... 56 6e-10 gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: ge... 52 1e-08 gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: term... 52 1e-08 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 44 4e-06 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 44 4e-06 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 43 8e-06 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 35 0.002 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 32 0.014 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 32 0.014 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 32 0.015 gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: ... 29 0.086 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 28 0.18 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 28 0.23 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 27 0.33 gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: pu... 26 0.99 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 25 1.9 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 25 1.9 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 25 1.9 gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: ter... 25 2.3 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 23 6.7 gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: h... 23 7.7 >gi|19292|lcl|protein:vir:4781 Length: 436 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150161;swissprot:trembl:q94m50;genbank:gi :15088772;goa:Q94M50;uniprot:Q94M50;genbank:GeneID:95597 6 Length = 436 Score = 912 bits (2357), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/436 (100%), Positives = 436/436 (100%) Query: 1 MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVV 60 MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVV Sbjct: 1 MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVV 60 Query: 61 IRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS 120 IRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS Sbjct: 61 IRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS 120 Query: 121 NDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW 180 NDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW Sbjct: 121 NDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW 180 Query: 181 FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY 240 FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY Sbjct: 181 FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY 240 Query: 241 NMSMFHAIDACPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV 300 NMSMFHAIDACPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV Sbjct: 241 NMSMFHAIDACPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV 300 Query: 301 VKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKV 360 VKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKV Sbjct: 301 VKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKV 360 Query: 361 TMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY 420 TMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY Sbjct: 361 TMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY 420 Query: 421 FVLDNAKLLGLRVGNV 436 FVLDNAKLLGLRVGNV Sbjct: 421 FVLDNAKLLGLRVGNV 436 >gi|5794|lcl|protein:vir:98922 Length: 453 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164412;genbank:gi:56694902;genbank:GeneID :3197313 Length = 453 Score = 580 bits (1496), Expect = e-167, Method: Compositional matrix adjust. Identities = 287/447 (64%), Positives = 351/447 (78%), Gaps = 16/447 (3%) Query: 1 MTFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVV 60 + FNVQ+NINPHFK VW SS PYN+LKGGRNSFKSSVI LKL +MM+ YI+ GE AN+VV Sbjct: 9 VMFNVQENINPHFKEVWTSSKPYNILKGGRNSFKSSVIALKLVFMMLLYILKGEKANVVV 68 Query: 61 IRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS 120 IRKV NTIRDSVFNK+ WA+ LFG+ +F TVSPFKI HK TGSTFYFYGQDDFQKLKS Sbjct: 69 IRKVGNTIRDSVFNKIQWAIKLFGLTRRFKPTVSPFKITHKRTGSTFYFYGQDDFQKLKS 128 Query: 121 NDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW 180 NDI +II VWYEEAAEF +E+FDQSNVTFMRQKHP A+FVQFFWSYNPPRNPY WINEW Sbjct: 129 NDIEDIIAVWYEEAAEFASEEEFDQSNVTFMRQKHPLAEFVQFFWSYNPPRNPYHWINEW 188 Query: 181 FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY 240 + + ++YL H S+YLDD+LGFVT QML+DIERIK ND+DYYRY+YLGE VGLG NVY Sbjct: 189 ADKMVGEEDYLVHESSYLDDQLGFVTGQMLKDIERIKNNDHDYYRYIYLGEPVGLGTNVY 248 Query: 241 NMSMFHAIDACPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV 300 NM++F +D PSDD++I + +++DGGH SATAC +G+TA+GKVI L+T+YYSPAG+V Sbjct: 249 NMNLFKPLDQLPSDDRVIALFYSVDGGHAHSATACGFYGLTARGKVIRLNTYYYSPAGRV 308 Query: 301 VKKAPSQLSKEIYAYMRSVIEK-----YRVQALQYTIDSAEGALRNQMFLDFGLKWHPVA 355 KKAPS+LSK+++ ++ + ++ R+Q + TID AE A+RNQ + D+G W PV Sbjct: 309 RKKAPSELSKDLHDFVTATAKQEYWKGARIQ--KRTIDDAEAAIRNQYYADYGQYWLPVG 366 Query: 356 KLRKVTMIDSFQSLLAQGRFYYL---------NTENNKIFIEEHKMYRWDEKTIKSDNPS 406 K +K+ MID LLAQGRFYYL + ++N IFIEEHK Y++DEKT+ SD+P Sbjct: 367 KKKKIDMIDYVHDLLAQGRFYYLTNPYPTGLEHCDSNDIFIEEHKKYQFDEKTLNSDDPK 426 Query: 407 VIKEDDHTCDTTQYFVLDNAKLLGLRV 433 VIKEDDHT D QYF NA+ L L+V Sbjct: 427 VIKEDDHTVDEFQYFCTANARDLRLKV 453 >gi|13020|lcl|protein:vir:80960 Length: 443 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468388;genbank:gi:157324962;genbank:Ge neID:5601395 Length = 443 Score = 452 bits (1162), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/433 (52%), Positives = 301/433 (69%), Gaps = 6/433 (1%) Query: 2 TFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVI 61 NV INP F +W+S + + KGGR+S KSSVI LKL + +A +N+V + Sbjct: 14 VINVTDMINPAFYDLWLSKHNHIIAKGGRSSMKSSVISLKL----VEKKMANPMSNMVCL 69 Query: 62 RKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSN 121 RKVANT+ SV+ ++ WAL G+A+QF SP +I+HK G+ FYF G DD KLKS Sbjct: 70 RKVANTLYKSVYQQIKWALYEMGVADQFNFGKSPMEIIHKEWGTGFYFSGCDDPAKLKSM 129 Query: 122 DI--GNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINE 179 I G + +W+EE AEF+ D D TF+R+ P+ + V + S+NPPRNPY W+NE Sbjct: 130 KIPVGYVSDLWFEELAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNE 189 Query: 180 WFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNV 239 + +S +++ +YL H +TYLDDE GF+++Q+++ IE+ K+ND DYYR++YLGE +GLG+NV Sbjct: 190 YVDSKRSDDDYLIHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNV 249 Query: 240 YNMSMFHAIDACPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQ 299 YNM++F + A P+DD+LI I FA+D GHQ SAT C A G TAK VILLDT+YYSPA Q Sbjct: 250 YNMNLFQPLKAIPADDRLILIDFAIDTGHQVSATTCLALGFTAKRNVILLDTYYYSPANQ 309 Query: 300 VVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRK 359 VVKKAPS SKE+ +M V+ KY T+DSAEG LRNQ + D+G+ HPVAK +K Sbjct: 310 VVKKAPSDYSKELREFMTKVVSKYNAPVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKK 369 Query: 360 VTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQ 419 V M+D LLAQGRFYYL+ N+IFIEEH+ Y+WD KT+ +D P VIKEDDHTCD Q Sbjct: 370 VDMVDFVCDLLAQGRFYYLDIPENQIFIEEHRKYQWDVKTVNTDKPEVIKEDDHTCDAFQ 429 Query: 420 YFVLDNAKLLGLR 432 Y+V DN + LGL+ Sbjct: 430 YYVKDNLRKLGLK 442 >gi|15836|lcl|protein:vir:37 Length: 443 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463463;swissprot:trembl:q9t1c1;genbank:gi :16798785;goa:Q9T1C1;uniprot:Q9T1C1;genbank:GeneID:92238 4 Length = 443 Score = 446 bits (1147), Expect = e-127, Method: Compositional matrix adjust. Identities = 227/432 (52%), Positives = 303/432 (70%), Gaps = 6/432 (1%) Query: 3 FNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIR 62 NV INP F +W+S + + KGGR+S KSSVI LKL + +A +N+V +R Sbjct: 15 INVIDMINPAFYDLWLSKHNHIIAKGGRSSMKSSVISLKL----VEKKMANPMSNMVCLR 70 Query: 63 KVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSND 122 KVANT+ SV+ ++ WAL G+A+QF SP +IVHKT G+ FYF G DD KLKS Sbjct: 71 KVANTLYKSVYQQIKWALYEMGVADQFKFGKSPMEIVHKTWGTGFYFSGCDDPAKLKSMK 130 Query: 123 I--GNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEW 180 I G + +W+EE AEF+ D D TF+R+ P+ + V + S+NPPRNPY W+NE+ Sbjct: 131 IPVGYVSGLWFEELAEFSGVTDIDVVEDTFIREDLPQGQEVTIYMSFNPPRNPYEWVNEY 190 Query: 181 FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY 240 +S +++ +YL H +TYLDDE GF+++Q+++ IE+ K+ND DYYR++YLGE +GLG+NVY Sbjct: 191 VDSKRSDDDYLIHHTTYLDDEKGFLSKQIIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVY 250 Query: 241 NMSMFHAIDACPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV 300 NM++F + A P+DD+LI I FA+D GHQ SAT +FG+TAK VILL+T+YYSPA QV Sbjct: 251 NMNLFQPLKAIPADDRLILIDFAIDTGHQVSATTYLSFGLTAKRNVILLNTYYYSPANQV 310 Query: 301 VKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKV 360 VKKAPS+ SKE+ +M V+ Y T+DSAEG LRNQ + D+G+ HPVAK +KV Sbjct: 311 VKKAPSEYSKELRDFMTKVVGNYNTNVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKKV 370 Query: 361 TMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY 420 MID LLAQGRFYYL+ N+IFIEEH+ Y+WD KTI +D P V+KEDDHTCD QY Sbjct: 371 DMIDFVCDLLAQGRFYYLDIPENQIFIEEHRKYQWDVKTINTDKPEVVKEDDHTCDAFQY 430 Query: 421 FVLDNAKLLGLR 432 +V DN + LGL+ Sbjct: 431 YVKDNLRKLGLK 442 >gi|655|lcl|protein:vir:1588 Length: 447 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695170;swissprot:trembl:o03927;genbank:gi :23455799;goa:O03927;interpro:IPR006437;interpro:IPR0067 01;interpro:IPR011441;uniprot:O03927;genbank:GeneID:9555 65 Length = 447 Score = 426 bits (1094), Expect = e-121, Method: Compositional matrix adjust. Identities = 206/426 (48%), Positives = 283/426 (66%), Gaps = 2/426 (0%) Query: 9 INPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTI 68 INPHFK +W + PY V GGR SFKSSVI LKL M+ + I+ AN++ + + + Sbjct: 21 INPHFKRMWTTDKPYIVANGGRGSFKSSVISLKLVTMVKKAIMQHRKANVIAVLANKSDL 80 Query: 69 RDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIP 128 D+V+N++ WAL++ + +F SP I HK TGS+FYFYG D+ KLKSN +G+++ Sbjct: 81 HDTVYNQIQWALSMLDMDNEFIAYKSPLTIQHKRTGSSFYFYGADNPYKLKSNIVGDVVA 140 Query: 129 VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTNK 188 VWYEEAA + FDQ+N TF+RQK V+ F+SYNPP+NPY WINEW + + + Sbjct: 141 VWYEEAANMKSSDVFDQANPTFIRQKPEWLDQVKVFYSYNPPKNPYDWINEWIDKVSKDD 200 Query: 189 NYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAI 248 NYL +S Y D GF ++Q L+ IE+ K+NDY+YYR+LYLGE +GLG ++YN S+ + Sbjct: 201 NYLIDTSDYRCDVRGFTSKQTLDLIEQYKKNDYEYYRWLYLGEVIGLGTSIYNPSLLKPL 260 Query: 249 DACPSDDKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQL 308 + P DD + + F+ D G Q SAT +TAK +VILLDT+YYSPA Q VKK PS+L Sbjct: 261 EVFPDDDYIKSLYFSQDSGQQVSATTELCIALTAKKRVILLDTYYYSPAHQSVKKPPSEL 320 Query: 309 SKEIYAYMRSVIEKYRVQALQYTIDSAEG--ALRNQMFLDFGLKWHPVAKLRKVTMIDSF 366 + E+YA+ S +++ +A + + D A A+ ++ F +G WH V K+ K MID Sbjct: 321 ADELYAFEDSREKQWHKKAWKRSADEATSDYAIDHEYFKKYGRHWHHVNKIEKTAMIDHV 380 Query: 367 QSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFVLDNA 426 Q LLA GRFYYL+ + N+IFI+EH+ Y+WD T++SD P VIK DDHTCD QYFVLDN Sbjct: 381 QDLLATGRFYYLDNKANQIFIDEHRKYQWDGDTLESDKPKVIKVDDHTCDAFQYFVLDNL 440 Query: 427 KLLGLR 432 + L LR Sbjct: 441 RDLELR 446 >gi|5891|lcl|protein:vir:107098 Length: 421 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950600;genbank:gi:119953680;genbank:GeneI D:4643107 Length = 421 Score = 134 bits (336), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 151/296 (51%), Gaps = 20/296 (6%) Query: 1 MTFNVQKNINPHFKSVWISSLPYN----VLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAA 56 ++ N+ + + HF S+W ++ V KGGR S KSS I + + +++RY + Sbjct: 3 ISINLSELLPKHFHSLWKATKDREKLNIVAKGGRGSGKSSDISIIITQLIMRYPM----- 57 Query: 57 NIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQ 116 N VV+RK NT+ SVF ++ WA+ ++ F VSP +I + G+ F G + + Sbjct: 58 NAVVVRKTDNTLATSVFEQIKWAIEEQKVSHLFKVKVSPMEITYVPRGNRIIFRGAQNPE 117 Query: 117 KLKSNDIGNIIP---VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNP 173 +LKS + P +W EE AEF +++ + +R + F +FF+SYNPP+ Sbjct: 118 RLKSLK-DSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRK 176 Query: 174 YSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAV 233 SW+N+ +E+ N H STYLD+ F+++Q +++ E KE + YR+ Y+GEA+ Sbjct: 177 QSWVNKKYETSFQPDNTFVHHSTYLDN--PFISKQFIQEAESAKERNEQRYRWEYMGEAI 234 Query: 234 GLGNNVYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVI 287 G G +N I+ P D I A+D G+ A + K ++I Sbjct: 235 GSGVVPFNNLQ---IEKIPDDLYKTFDNIRNAVDFGYATDPLAFVRWHYDKKKRII 287 >gi|7076|lcl|protein:vir:96147 Length: 419 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240074;genbank:gi:66395738;genbank:GeneID :5133130 Length = 419 Score = 132 bits (333), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 88/295 (29%), Positives = 149/295 (50%), Gaps = 18/295 (6%) Query: 1 MTFNVQKNINPHFKSVWISSLPYN----VLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAA 56 M + + I HF S+W ++ V KGGR S KSS I + + +++RY + Sbjct: 1 MRVKLSELIPEHFHSLWHAAKDKGKLNIVAKGGRGSGKSSDIAIIIVLLIMRYPV----- 55 Query: 57 NIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQ 116 N +++RK+ NT+ SVF ++ WA+N+ G++ F VSP +I + G+ F G + + Sbjct: 56 NALILRKIDNTLALSVFEQIKWAINVMGVSHLFKIKVSPMEITYVPRGNKMVFRGAQNPE 115 Query: 117 KLKSNDIGNI--IPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPY 174 ++KS W EE AEF +++ + +R + F +FF++YNPP+ Sbjct: 116 RIKSLKDAQFPYAIAWIEELAEFKTEDEVTTITNSLLRGELDNGLFYKFFYTYNPPKRKQ 175 Query: 175 SWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVG 234 SW+N+ +ES N H STYL++ F+ ++ +E+ + K + YR+ YLGEA+G Sbjct: 176 SWVNKKYESSFQPDNTFVHHSTYLNNP--FIAKEFIEEAKAAKAINELRYRWEYLGEAIG 233 Query: 235 LGNNVYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVI 287 G +N I+ P + D I A+D G+ A + K ++I Sbjct: 234 SGVVPFNNLR---IETIPKEQFDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRII 285 >gi|6284|lcl|protein:vir:95890 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240381;genbank:gi:66396048;genbank:GeneID :5133401 Length = 421 Score = 132 bits (333), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 149/295 (50%), Gaps = 18/295 (6%) Query: 1 MTFNVQKNINPHFKSVWISSLPYNVL----KGGRNSFKSSVIVLKLAYMMIRYIIAGEAA 56 ++ N+ + HF+ +W ++ +L KGGR S KSS I + + +++RY + Sbjct: 3 ISINLSDLLPKHFRPLWKATKDKGILNIIAKGGRGSGKSSDISIIITQLIMRYPM----- 57 Query: 57 NIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQ 116 N VVIRK NT+ SVF ++ WA+ ++ F VSP +I + G+ F G + + Sbjct: 58 NAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVKVSPMEITYIPRGNRIIFRGAQNPE 117 Query: 117 KLKS--NDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPY 174 +LKS + W EE AEF +++ + +R + F +FF+SYNPP+ Sbjct: 118 RLKSLKDSRFPFSVAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQ 177 Query: 175 SWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVG 234 SW+N+ +ES N H STYL++ F+++Q +++ E K+ + YR+ Y+GEA+G Sbjct: 178 SWVNKKYESSFQADNTFVHHSTYLNNP--FISKQFIQEAESAKKRNEQRYRWEYMGEAIG 235 Query: 235 LGNNVYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVI 287 G +N I+ P D I A+D G+ A + K +VI Sbjct: 236 SGVVPFNNLR---IEEIPQGQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVI 287 >gi|10354|lcl|protein:vir:97448 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240743;genbank:gi:66396415;genbank:GeneID :5133804 Length = 421 Score = 131 bits (329), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 150/303 (49%), Gaps = 20/303 (6%) Query: 1 MTFNVQKNINPHFKSVWISSLPYNVL----KGGRNSFKSSVIVLKLAYMMIRYIIAGEAA 56 ++ N+ + HF +W + VL KGGR S KSS I + + +++RY + Sbjct: 3 ISINLSDLLPKHFHPLWKVTKDKEVLNVVAKGGRGSGKSSDISIIITQLIMRYPM----- 57 Query: 57 NIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQ 116 N VVIRK NT+ SVF ++ WA+ ++ F VSP +I + G+ F G + + Sbjct: 58 NAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVKVSPMEITYIPRGNRIIFRGAQNPE 117 Query: 117 KLKSNDIGNIIP---VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNP 173 +LKS + P W EE AEF +++ + +R + F +FF+SYNPP+ Sbjct: 118 RLKSLK-DSRFPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRK 176 Query: 174 YSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAV 233 SW+N+ +ES N H STYL++ F+++Q +++ E K+ + YR+ Y+GEA+ Sbjct: 177 QSWVNKKYESSFQADNTYVHHSTYLNN--PFISKQFIQEAESAKKRNEQRYRWEYMGEAI 234 Query: 234 GLGNNVYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVILLDT 291 G G +N I+ P D I A+D G+ A + K +VI Sbjct: 235 GSGVVPFNNLR---IEEIPQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMD 291 Query: 292 WYY 294 YY Sbjct: 292 EYY 294 >gi|3182|lcl|protein:vir:94499 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240671;genbank:gi:66396341;genbank:GeneID :5133763 Length = 421 Score = 131 bits (329), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 150/303 (49%), Gaps = 20/303 (6%) Query: 1 MTFNVQKNINPHFKSVWISSLPYNVL----KGGRNSFKSSVIVLKLAYMMIRYIIAGEAA 56 ++ N+ + HF +W + VL KGGR S KSS I + + +++RY + Sbjct: 3 ISINLSDLLPKHFHPLWKVTKDKEVLNVVAKGGRGSGKSSDISIIITQLIMRYPM----- 57 Query: 57 NIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQ 116 N VVIRK NT+ SVF ++ WA+ ++ F VSP +I + G+ F G + + Sbjct: 58 NAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVKVSPMEITYIPRGNRIIFRGAQNPE 117 Query: 117 KLKSNDIGNIIP---VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNP 173 +LKS + P W EE AEF +++ + +R + F +FF+SYNPP+ Sbjct: 118 RLKSLK-DSRFPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRK 176 Query: 174 YSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAV 233 SW+N+ +ES N H STYL++ F+++Q +++ E K+ + YR+ Y+GEA+ Sbjct: 177 QSWVNKKYESSFQADNTYVHHSTYLNN--PFISKQFIQEAESAKKRNEQRYRWEYMGEAI 234 Query: 234 GLGNNVYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVILLDT 291 G G +N I+ P D I A+D G+ A + K +VI Sbjct: 235 GSGVVPFNNLR---IEEIPQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAMD 291 Query: 292 WYY 294 YY Sbjct: 292 EYY 294 >gi|7569|lcl|protein:vir:96300 Length: 421 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240307;genbank:gi:66395973;genbank:GeneID :5133377 Length = 421 Score = 131 bits (329), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 91/296 (30%), Positives = 149/296 (50%), Gaps = 20/296 (6%) Query: 1 MTFNVQKNINPHFKSVWISSLPYNVL----KGGRNSFKSSVIVLKLAYMMIRYIIAGEAA 56 ++ N+ + HF +W ++ ++L KGGR S KSS I + + +++RY + Sbjct: 3 ISINLSDLLPKHFHPLWKATKDKDLLNIIAKGGRGSGKSSDISIIITQLIMRYPM----- 57 Query: 57 NIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQ 116 N VVIRK NT+ SVF ++ WA+ + F VSP +I + G+ F G + + Sbjct: 58 NAVVIRKTDNTLATSVFEQIKWAIEEQKVTHLFKVKVSPMEITYIPRGNRIIFRGAQNPE 117 Query: 117 KLKSNDIGNIIP---VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNP 173 +LKS + P W EE AEF +++ + +R + F +FF+SYNPP+ Sbjct: 118 RLKSLK-DSRFPFSIAWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRK 176 Query: 174 YSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAV 233 SW+N+ +ES N H STYL++ F+++Q +++ E K+ + YR+ Y+GEA+ Sbjct: 177 QSWVNKKYESSFQADNTFVHHSTYLNN--PFISKQFIQEAESAKKRNEQRYRWEYMGEAI 234 Query: 234 GLGNNVYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVI 287 G G +N I+ P D I A+D G+ A + K +VI Sbjct: 235 GSGVVPFNNLR---IEEIPQGQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVI 287 >gi|10483|lcl|protein:vir:105297 Length: 446 # NCBI annotation: putative large terminase subunit # Family: family:all:54 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950664;genbank:gi:119967835;genbank:GeneI D:4643176 Length = 446 Score = 130 bits (328), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 127/232 (54%), Gaps = 15/232 (6%) Query: 12 HFKSVWISSLPYN----VLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANT 67 HF S+W ++ V KGGR S KSS I + + +++RY + N VV+RK NT Sbjct: 13 HFHSLWKATKDREKLNIVAKGGRGSGKSSDISIIITQLIMRYPM-----NAVVVRKADNT 67 Query: 68 IRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNII 127 + SVF ++ WA+ ++ F VSP +I + G+ F G + ++LKS + Sbjct: 68 LATSVFEQIKWAIEEQKVSHLFKVKVSPMEITYVPRGNRIIFRGAQNPERLKSLK-DSRF 126 Query: 128 P---VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESI 184 P +W EE AEF +++ + +R + F +FF+SYNPP+ SW+N+ +E+ Sbjct: 127 PFSIMWIEELAEFKTEDEVTTITNSMLRGELDDGLFYKFFFSYNPPKRKQSWVNKKYETS 186 Query: 185 KTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 N H STYLD+ F+++Q +++ E KE + YR+ Y+GEA+G G Sbjct: 187 FQPDNTFVHHSTYLDNP--FISKQFIQEAESAKERNEQRYRWEYMGEAIGSG 236 >gi|4983|lcl|protein:vir:95058 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240816;genbank:gi:66394679;genbank:GeneID :5133852 Length = 421 Score = 129 bits (325), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 149/295 (50%), Gaps = 18/295 (6%) Query: 1 MTFNVQKNINPHFKSVWISSLPYNVL----KGGRNSFKSSVIVLKLAYMMIRYIIAGEAA 56 ++ N+ + HF +W ++ +L KGGR S KSS I + + +++RY + Sbjct: 3 ISINLSDLLPMHFHPLWKATKDKEILNIVAKGGRGSGKSSDISIIITQLIMRYPM----- 57 Query: 57 NIVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQ 116 N VVIRK NT+ SVF ++ WA+ ++ F VSP +I + G+ F G + + Sbjct: 58 NAVVIRKTDNTLATSVFEQIKWAIEEQKVSHLFKVKVSPMEITYIPRGNRIIFRGAQNPE 117 Query: 117 KLKS-NDIGNIIPV-WYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPY 174 +LKS D + W EE AEF +++ + +R + F +FF+SYNPP+ Sbjct: 118 RLKSLKDSRFPFSISWIEELAEFKTEDEVTTITNSLLRGELDEGLFYKFFFSYNPPKRKQ 177 Query: 175 SWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVG 234 SW+N+ +ES N H STYL++ F+++Q +++ E K+ + YR+ Y+GEA+G Sbjct: 178 SWVNKKYESSFQADNTYVHHSTYLNN--PFISKQFIQEAESAKKRNEQRYRWEYMGEAIG 235 Query: 235 LGNNVYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVI 287 G +N I+ P D I A+D G+ A + K +VI Sbjct: 236 SGVVPFNNLR---IEEIPQRQYDTFDNIRNAVDFGYATDPLAFVRWHYDKKKRVI 287 >gi|18074|lcl|protein:vir:5954 Length: 422 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690654;genbank:geneid:6329138;genbank:gi: 22855048;goa:P54308;interpro:IPR006437;interpro:IPR00670 1;interpro:IPR011441;uniprot:P54308;genbank:GeneID:95525 4 Length = 422 Score = 121 bits (303), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 112/431 (25%), Positives = 195/431 (45%), Gaps = 44/431 (10%) Query: 5 VQKNINPHFKSVWIS-----SLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIV 59 + + PHF VW + L Y VLKGGR S KS+ I + + +M+ I + Sbjct: 6 LSEKFTPHFLEVWRTVKAAQHLKY-VLKGGRGSAKSTHIAMWIILLMMMMPIT-----FL 59 Query: 60 VIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLK 119 VIR+V NT+ SVF ++ A+++ + + + SP ++ + G++ F G DD QK+K Sbjct: 60 VIRRVYNTVEQSVFEQLKEAIDMLEVGHLWKVSKSPLRLTYIPRGNSIIFRGGDDVQKIK 119 Query: 120 SNDIGN--IIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 S + +W EE AEF +E+ + +R + P FF+SYNPP+ SW+ Sbjct: 120 SIKASKFPVAGMWIEELAEFKTEEEVSVIEKSVLRAELPPGCRYIFFYSYNPPKRKQSWV 179 Query: 178 NEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGN 237 N+ F S N STYL + F+++ +E+ E +K + YR+ YLGEA+G G Sbjct: 180 NKVFNSSFLPANTFVDHSTYLQNP--FLSKAFIEEAEEVKRRNELKYRHEYLGEALGSGV 237 Query: 238 NVY-NMSMFHAIDACPSDDKLIGISFALDGGHQQSATACCAFGI-TAKGKVILLDTWYYS 295 + N+ + I + I LD G+ A + K ++ +D Sbjct: 238 VPFENLQIEEGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDKRKNRIYAIDELVDH 297 Query: 296 PAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQA-----LQYTIDSAEGALRNQMFLDFGLK 350 +K+ + K Y R + + ++ L++ I+ EGA + ++ G + Sbjct: 298 KVS--LKRTADFVRKNKYESARIIADSSEPRSIDALKLEHGINRIEGAKKGPDSVEHGER 355 Query: 351 WHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDN-PSVIK 409 W + +L + +ID ++ F ++ + +K D P + Sbjct: 356 W--LDELDAI-VIDPLRTPNIAREFENIDYQTDK----------------NGDPIPRLED 396 Query: 410 EDDHTCDTTQY 420 +D+HT D T+Y Sbjct: 397 KDNHTIDATRY 407 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 119 bits (298), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 144/298 (48%), Gaps = 12/298 (4%) Query: 2 TFNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVI 61 + N+ + I HF +W ++ N+L + S ++ ++I +I N VV+ Sbjct: 4 SINLSELIPEHFHDLWRATKDPNILNVVGKGGRGSGKSSDIS-IIITQLIMRYPMNAVVV 62 Query: 62 RKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSN 121 RK NT+ SVF ++ WA+ ++ F VSP +I + G+ F G + ++LKS Sbjct: 63 RKTDNTLATSVFEQIKWAIEQQKVSHLFKVKVSPMEITYMPRGNRIIFRGAQNPERLKSL 122 Query: 122 DIGNIIP---VWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWIN 178 + P +W EE AEF +++ + +R + F +FF+SYNPP+ SW+N Sbjct: 123 K-DSRFPFSIMWIEELAEFKTEDEVTTITNSMLRGELDEGLFYKFFFSYNPPKRKQSWVN 181 Query: 179 EWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNN 238 + +ES N H STYLD+ F+ +Q +++ E KE + YR+ YLGEA+G G Sbjct: 182 KKYESSFQPDNTFVHHSTYLDN--PFIAKQFIDEAEAAKERNELRYRWEYLGEAIGSGVV 239 Query: 239 VYNMSMFHAIDACPSD--DKLIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYY 294 +N I+ P + I A+D G+ A + K +VI YY Sbjct: 240 PFNNLQ---IEKIPDELFRSFDNIRNAVDFGYATDPLAFVRWHYDKKKRVIYAVDEYY 294 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 79.3 bits (194), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 79/280 (28%), Positives = 125/280 (44%), Gaps = 26/280 (9%) Query: 12 HFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTIRDS 71 H VW GG +S KS +V K+ +++ ++ +RKV T+++S Sbjct: 28 HLTEVWY---------GGASSGKSHGVVQKVVLKSLQH--WNVPRKVLWLRKVDRTVKNS 76 Query: 72 VFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIPVWY 131 +F V L+ + I Q+ K + G+ F F G DD +K+KS I + V Sbjct: 77 IFTDVTECLSGWNIL-QYCHVNRSDKTIVLPNGAIFLFQGMDDPEKIKS--IKGLSDVVM 133 Query: 132 EEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFE-SIKTNKNY 190 EEA+EFN D+ Q +R + P+ K Q F +NP WF+ S +++ Sbjct: 134 EEASEFN-HNDYTQLT---LRLREPKHKQRQIFCMFNPVSKLNWTYQTWFDPSADYDRSR 189 Query: 191 LA-HSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAID 249 +A H STY D+ F+ E + IE +K + YY+ LGE L V+ F Sbjct: 190 VAIHQSTYKDNR--FLDEDNIRTIEELKNTNPAYYKIYTLGEFATLDKLVF--PYFETKR 245 Query: 250 ACPSDDKLIGIS--FALDGGHQQSATACCAFGITAKGKVI 287 P D KL+ ++ F LD G +A + + K + Sbjct: 246 LNPRDPKLLALNDYFGLDYGFINDPSAFMHIKLDMRNKTL 285 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 77.4 bits (189), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 11/183 (6%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+V+RKV T+RDSVF + L+ FGI ++ +S F+I G+ F F G D+ +K Sbjct: 69 ILVLRKVGATVRDSVFADIMSNLSYFGILDKCKINMSAFRITL-PNGAEFIFKGMDNPEK 127 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I V EEA+EF +D+ Q + +KH Q + +NP + +W+ Sbjct: 128 IKS--IKGISDVVMEEASEFT-LDDYTQLTLRLRDKKHLEK---QIYLMFNPV-SKVNWV 180 Query: 178 NEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGN 237 + F +KT KN + + +TY D+ F+ + E+IE + + YY+ LG+ L Sbjct: 181 YKAF-FVKTPKNTVVYQTTYKDNR--FLDDVTRENIEELANRNEAYYKIYALGQFATLDK 237 Query: 238 NVY 240 ++ Sbjct: 238 LIF 240 >gi|10799|lcl|protein:vir:78055 Length: 440 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468786;genbank:gi:157325367;genbank:Ge neID:5601817 Length = 440 Score = 75.1 bits (183), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/238 (27%), Positives = 122/238 (51%), Gaps = 16/238 (6%) Query: 13 FKSVWISSLPYNV-LKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTIRDS 71 ++ V ++ P +V +KGGR S KSS + L M++ I+ AN V+ RKV +R + Sbjct: 34 YQRVLDNTAPSHVWMKGGRGSGKSSFVAL----MVVDEIMKDPQANAVIFRKVDEGMRTT 89 Query: 72 VFNKVWWALNLFGIAEQFTKTVSPFKIVHKT--TG--STFYFYGQDDFQKLKSND--IGN 125 + + WA++ G++ + ++ P +++K TG F G D +++K++ +G Sbjct: 90 LLPQYQWAIDQLGVSGAWRTSLQPMMLLYKNPETGLEQQIRFKGVKDPKRVKASKFRVGY 149 Query: 126 IIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIK 185 + YEEA E+ +EDF N ++MR + + F+ YNPP+ W+N W + I+ Sbjct: 150 AKYLIYEEADEYESEEDFSIVNSSYMRGEGTGDS--RAFYLYNPPKYKGHWLNNWVDVIR 207 Query: 186 TNKNYLAHSSTYLDDELG---FVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVY 240 + H ST++ L ++ LE +++ + + Y + +LG V GN V+ Sbjct: 208 DEPSQYVHHSTFIPIALHHPEWLGSTWLESARLVRDKNPNRYEWEFLGRNVNTGNEVF 265 >gi|3326|lcl|protein:vir:94525 Length: 440 # NCBI annotation: putative large subunit terminase # Family: family:all:54 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223885;genbank:gi:62327097;genbank:GeneID :5075541 Length = 440 Score = 75.1 bits (183), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 83/319 (26%), Positives = 137/319 (42%), Gaps = 29/319 (9%) Query: 23 YNVLKGGRNSFKSSVIVLK--LAYMMIRYIIAGEAANIVVIRKVANTIRDSVFNKVWWAL 80 Y V KG R S KS K + MM Y+ N +V R+ A T +DS F + Sbjct: 37 YLVYKGSRGSGKSYATAAKVIIDIMMYPYV------NWLVTRQYATTQKDSTFATIRKVA 90 Query: 81 NLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSND--IGNIIPVWYEEAAEFN 138 + G+ + F T SP +I +K TG +F G DD K+ S G I W EEA E Sbjct: 91 HSMGVLDLFKFTKSPLEITYKQTGQKVFFRGMDDPLKITSIQPVTGFICRRWCEEAYELK 150 Query: 139 DQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTNKNY-LAHSSTY 197 + FD + MR + P F Q ++NP + + W+ F KT +N+ A ++TY Sbjct: 151 SLDAFDTVEES-MRGELPPGGFYQTVITFNPWSDRH-WLKHEFFDDKTKRNHSRAITTTY 208 Query: 198 LDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAIDACPSDDKL 257 D++ + ++ ++ + + + R LGE G+ + +F D + Sbjct: 209 KDND--HLNADYVDSLKEMLVRNPNRARVAVLGEW-GIAEGLVFDGLFEQRDFSYDEIAN 265 Query: 258 IGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMR 317 + S LD G + TA + +++ + +Y +Q+++E Sbjct: 266 LPKSVGLDFGFKHDPTAGEFIAVDQDNRIVYIYDEFYKQ-----HLLTNQIAQE------ 314 Query: 318 SVIEKYRVQALQYTIDSAE 336 + K++ L T DSAE Sbjct: 315 --LAKHKAFGLPITADSAE 331 >gi|9289|lcl|protein:vir:97165 Length: 431 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239721;genbank:gi:66394878;genbank:GeneID :5130898 Length = 431 Score = 71.2 bits (173), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/206 (29%), Positives = 96/206 (46%), Gaps = 16/206 (7%) Query: 3 FNVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIR 62 +++ I + W + Y V+KG R S KS + L Y +++Y + ANI+V+R Sbjct: 5 LDLKNKIGGGYNKFWHNKNFYRVVKGSRGSKKSKTTAINLIYRIMKY----DWANILVVR 60 Query: 63 KVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS-- 120 + +NT + S + + WA N G+A F S +I +K TG F G DD K+ S Sbjct: 61 RFSNTNKQSTYTDLKWATNQLGVAHLFKFNESLPEITYKPTGQKILFRGLDDPLKITSIT 120 Query: 121 NDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYS---WI 177 D G + W+EEA + F + V +R + +FF NP+S W+ Sbjct: 121 VDTGILCWAWFEEAYQIETFAKF-STVVESIRGSYDSP---EFFKQITVTFNPWSERHWL 176 Query: 178 NEWF--ESIKTNKNYLAHSSTYLDDE 201 F E K N N + ++TY +E Sbjct: 177 KPTFFDEETKLN-NTFSDTTTYRVNE 201 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 67.8 bits (164), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 6/200 (3%) Query: 4 NVQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRK 63 N+ + + + W S Y V+KGGR S KS L +++Y AN++V+R+ Sbjct: 10 NLPEIVGKGYGQFWRSKNFYRVVKGGRGSKKSKTTALYYIVAILKY----NWANLLVVRR 65 Query: 64 VANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKS--N 121 +NT + S + + WA N ++ F S +I K TG F G DD K+ S Sbjct: 66 FSNTNKQSTYTDLKWAANRLNVSHLFKFNESLPEITVKATGQKILFRGLDDPLKITSITV 125 Query: 122 DIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWF 181 D G + +W EEA + +Q+ F+ + F Q ++NP + + +F Sbjct: 126 DTGLLSWLWLEEAYQVENQDKFETLVESIRGSIDAPDFFKQITVTFNPWSERHWLKSAFF 185 Query: 182 ESIKTNKNYLAHSSTYLDDE 201 + K+ A ++TY +E Sbjct: 186 DEDTRKKDVFADTTTYRVNE 205 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 65.9 bits (159), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+ +RKV +TI+DS+F V L FGI + + K V G+ F F G D+ +K Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNK-VELPNGAVFLFKGLDNPEK 143 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I + EEA+EF D+ Q + +KH Q F +NP + +W+ Sbjct: 144 IKS--IKGISDIVMEEASEFT-LNDYTQLTLRLRERKHVNK---QIFLMFNPV-SKLNWV 196 Query: 178 NEW-FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 ++ FE + +N + S+Y D++ F+ E +++E + + YY+ LGE L Sbjct: 197 YKYFFEHGEPMENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIYALGEFATLD 254 Query: 237 NNVYNMSMFHAIDACPSDDKLIGIS--FALDGGHQQSATACCAFGITAKGKVILLDTWYY 294 V+ I+ D+L + F LD G+ +A I K K + + Y Sbjct: 255 KLVFPKYEKRLINK----DELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEY- 309 Query: 295 SPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAE----GALRNQMFLDFGLK 350 VK+ L+ EI +VI++ + T DSAE LRN GLK Sbjct: 310 ------VKQG--MLNDEI----ANVIKQLGYAKEEITADSAEQKSIAELRN-----LGLK 352 Query: 351 WHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRW--DEKTIKSDNPSVI 408 K K +++ Q L+ +F + E IEE Y W D+ T + N V Sbjct: 353 RILPTKKGKGSVVQGLQFLM---QFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV- 408 Query: 409 KEDDHTCDTTQYFV 422 +H D+ +Y V Sbjct: 409 DTYNHCIDSLRYSV 422 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 65.9 bits (159), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+ +RKV +TI+DS+F V L FGI + + K V G+ F F G D+ +K Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNK-VELPNGAVFLFKGLDNPEK 143 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I + EEA+EF D+ Q + +KH Q F +NP + +W+ Sbjct: 144 IKS--IKGISDIVMEEASEFT-LNDYTQLTLRLRERKHVNK---QIFLMFNPV-SKLNWV 196 Query: 178 NEW-FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 ++ FE + +N + S+Y D++ F+ E +++E + + YY+ LGE L Sbjct: 197 YKYFFEHGEPMENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIYALGEFATLD 254 Query: 237 NNVYNMSMFHAIDACPSDDKLIGIS--FALDGGHQQSATACCAFGITAKGKVILLDTWYY 294 V+ I+ D+L + F LD G+ +A I K K + + Y Sbjct: 255 KLVFPKYEKRLINK----DELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEY- 309 Query: 295 SPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAE----GALRNQMFLDFGLK 350 VK+ L+ EI +VI++ + T DSAE LRN GLK Sbjct: 310 ------VKQG--MLNDEI----ANVIKQLGYAREEITADSAEQKSIAELRN-----LGLK 352 Query: 351 WHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRW--DEKTIKSDNPSVI 408 K K +++ Q L+ +F + E IEE Y W D+ T + N V Sbjct: 353 RILPTKKGKGSVVQGLQFLM---QFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV- 408 Query: 409 KEDDHTCDTTQYFV 422 +H D+ +Y V Sbjct: 409 DTYNHCIDSLRYSV 422 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 65.5 bits (158), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+ +RKV +TI+DS+F V L FGI + + K V G+ F F G D+ +K Sbjct: 63 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNK-VELPNGAVFLFKGLDNPEK 121 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I + EEA+EF D+ Q + +KH Q F +NP + +W+ Sbjct: 122 IKS--IKGISDIVMEEASEFT-LNDYTQLTLRLRERKHVNK---QIFLMFNPV-SKLNWV 174 Query: 178 NEW-FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 ++ FE + +N + S+Y D++ F+ E +++E + + YY+ LGE L Sbjct: 175 YKYFFEHGEPMENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIYALGEFATLD 232 Query: 237 NNVYNMSMFHAIDACPSDDKLIGIS--FALDGGHQQSATACCAFGITAKGKVILLDTWYY 294 V+ I+ D+L + F LD G+ +A I K K + + Y Sbjct: 233 KLVFPKYEKRLINK----DELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEY- 287 Query: 295 SPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAE----GALRNQMFLDFGLK 350 VK+ L+ EI +VI++ + T DSAE LRN GLK Sbjct: 288 ------VKQG--MLNDEI----ANVIKQLGYAKEEITADSAEQKSIAELRN-----LGLK 330 Query: 351 WHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRW--DEKTIKSDNPSVI 408 K K +++ Q L+ +F + E IEE Y W D+ T + N V Sbjct: 331 RILPTKKGKGSVVQGLQFLM---QFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV- 386 Query: 409 KEDDHTCDTTQYFV 422 +H D+ +Y V Sbjct: 387 DTYNHCIDSLRYSV 400 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 65.1 bits (157), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+ +RKV +TI+DS+F V L FGI + + K V G+ F F G D+ +K Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNK-VELPNGAVFLFKGLDNPEK 143 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I + EEA+EF D+ Q + +KH Q F +NP + +W+ Sbjct: 144 IKS--IKGISDIVMEEASEFT-LNDYTQLTLRLRERKHVNK---QIFLMFNPV-SKLNWV 196 Query: 178 NEW-FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 ++ FE + +N + S+Y D++ F+ E +++E + + YY+ LGE L Sbjct: 197 YKYFFEHGEPMENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIYALGEFSTLD 254 Query: 237 NNVYNMSMFHAIDACPSDDKLIGIS--FALDGGHQQSATACCAFGITAKGKVILLDTWYY 294 V+ I+ D+L + F LD G+ +A I K K + + Y Sbjct: 255 KLVFPKYEKRLINK----DELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEY- 309 Query: 295 SPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAE----GALRNQMFLDFGLK 350 VK+ L+ EI +VI++ + T DSAE LRN GLK Sbjct: 310 ------VKQG--MLNDEI----ANVIKQLGYAKEEITADSAEQKSIAELRN-----LGLK 352 Query: 351 WHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRW--DEKTIKSDNPSVI 408 K K +++ Q L+ +F + E IEE Y W D+ T + N V Sbjct: 353 RILPTKKGKGSVVQGLQFLM---QFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV- 408 Query: 409 KEDDHTCDTTQYFV 422 +H D+ +Y V Sbjct: 409 DTYNHCIDSLRYSV 422 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 65.1 bits (157), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+ +RKV +TI+DS+F V L FGI + + K V G+ F F G D+ +K Sbjct: 85 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNK-VELPNGAVFLFKGLDNPEK 143 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I + EEA+EF D+ Q + +KH Q F +NP + +W+ Sbjct: 144 IKS--IKGISDIVMEEASEFT-LNDYTQLTLRLRERKHVNK---QIFLMFNPV-SKLNWV 196 Query: 178 NEW-FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 ++ FE + +N + S+Y D++ F+ E +++E + + YY+ LGE L Sbjct: 197 YKYFFEHGEPMENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIYALGEFSTLD 254 Query: 237 NNVYNMSMFHAIDACPSDDKLIGIS--FALDGGHQQSATACCAFGITAKGKVILLDTWYY 294 V+ I+ D+L + F LD G+ +A I K K + + Y Sbjct: 255 KLVFPKYEKRLINK----DELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEY- 309 Query: 295 SPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAE----GALRNQMFLDFGLK 350 VK+ L+ EI +VI++ + T DSAE LRN GLK Sbjct: 310 ------VKQG--MLNDEI----ANVIKQLGYAKEEITADSAEQKSIAELRN-----LGLK 352 Query: 351 WHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRW--DEKTIKSDNPSVI 408 K K +++ Q L+ +F + E IEE Y W D+ T + N V Sbjct: 353 RILPTKKGKGSVVQGLQFLM---QFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV- 408 Query: 409 KEDDHTCDTTQYFV 422 +H D+ +Y V Sbjct: 409 DTYNHCIDSLRYSV 422 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 64.7 bits (156), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 23/254 (9%) Query: 5 VQKNINPHFKSVWISSLPYNVLKGGRNSFKSSVI----VLKLAYMMIRYIIAGEAANIVV 60 V+ N NP FK + Y +KG S KS + +LKL +Y + AN++V Sbjct: 7 VRVNFNPDFKEANFTKKRYRAMKGSAGSGKSVNVAQDYILKLGDK--KY----QGANLLV 60 Query: 61 IRKVANTIRDSVFNKVWWALN-LFGI-AEQFTK-TVSPFKIVHKTTGSTFYFYGQDDF-- 115 +RK T + S + ++ A+N ++G A+++ K T++P +I K TG++ F G +D Sbjct: 61 VRKSEATHKYSTYAELTGAINRIYGKQADKYWKTTLNPLEIKSKVTGNSIIFRGVNDAKQ 120 Query: 116 -QKLKSNDI--GNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRN 172 +KLKS + G + VW EEA E + D D + + Q +++NP Sbjct: 121 REKLKSINFSKGKLTWVWCEEATELM-ESDIDILDDRLRGILTNPNLYYQMTFTFNPVSA 179 Query: 173 PYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEA 232 + WI + K N + H STYL + F+ E ++ KE D + Y+ LGE Sbjct: 180 TH-WIKRKYFDYK-NDDIFTHHSTYLQNR--FIDEAYYRRMQMRKEQDPEGYKVYGLGEW 235 Query: 233 VGLGNNVYNMSMFH 246 G + + H Sbjct: 236 GETGGAILKNYVIH 249 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 64.7 bits (156), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 165/374 (44%), Gaps = 45/374 (12%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+ +RKV +TI+DS+F V L FGI + + K V G+ F F G D+ +K Sbjct: 63 ILWLRKVQSTIKDSLFEDVKDCLINFGIWDMCLWNKTDNK-VGLPNGAVFLFKGLDNPEK 121 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I + EEA+EF D+ Q + +KH Q F +NP + +W+ Sbjct: 122 IKS--IKGISDIVMEEASEFT-LNDYTQLTLRLRERKHVNK---QIFLIFNPV-SKLNWV 174 Query: 178 NEW-FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 ++ FE + +N + S+Y D++ F+ E +++E + + YY+ LGE L Sbjct: 175 YKYFFEHGEPMENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIYALGEFATLD 232 Query: 237 NNVYNMSMFHAIDACPSDDKLIGIS--FALDGGHQQSATACCAFGITAKGKVILLDTWYY 294 V+ I+ D+L + F LD G+ +A I K K + + Y Sbjct: 233 KLVFPKYEKRLINK----DELRHLPSYFGLDFGYVNDPSAFIHSKIDVKKKKLYIIEEY- 287 Query: 295 SPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQYTIDSAE----GALRNQMFLDFGLK 350 VK+ L+ EI +VI++ + T DSAE LRN GLK Sbjct: 288 ------VKQG--MLNDEI----ANVIKQLGYAKEEITADSAEQKSIAELRN-----LGLK 330 Query: 351 WHPVAKLRKVTMIDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRW--DEKTIKSDNPSVI 408 K K +++ Q L+ +F + E IEE Y W D+ T + N V Sbjct: 331 RILPTKKGKGSVVQGLQFLM---QFEIIVDERCFKTIEEFDNYTWQKDKDTGEYTNEPV- 386 Query: 409 KEDDHTCDTTQYFV 422 +H D+ +Y V Sbjct: 387 DTYNHCIDSLRYSV 400 >gi|13903|lcl|protein:vir:9870 Length: 273 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795632;genbank:gi:28876409;genbank:GeneID :1257943 Length = 273 Score = 64.3 bits (155), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 6/128 (4%) Query: 151 MRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQML 210 MR + F +FF++YNPP+ SW+N+ +ES N H+STY D+ F+ ++ + Sbjct: 1 MRGELGDGLFYKFFYTYNPPKRKQSWVNKKYESQFQPSNTFVHASTYKDNP--FIAKEFI 58 Query: 211 EDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAIDACPSDDKLIGISFALDGGHQQ 270 + E +E YR+ YLGEA+G G ++ F I +D+++ +G Sbjct: 59 AEAEATRERSERRYRWEYLGEAIGSGVVPFDNLRFERI----TDEQVADFDNIRNGIDYG 114 Query: 271 SATACCAF 278 AT AF Sbjct: 115 YATDPLAF 122 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 60.8 bits (146), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 68/240 (28%), Positives = 110/240 (45%), Gaps = 19/240 (7%) Query: 58 IVVIRKVANTIRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQK 117 I+ +RKV +TI+DS+F V L FGI + + K V G+ F F G D+ +K Sbjct: 85 ILWLRKVQSTIKDSLFEDVKGCLINFGIWDMCLWNKTDNK-VELPNGAVFLFKGLDNPEK 143 Query: 118 LKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWI 177 +KS I I + EEA+EF D+ Q + +KH Q F +NP + +W+ Sbjct: 144 IKS--IKGISDIVMEEASEFT-LNDYTQLTLRLRERKHMNK---QIFLMFNPV-SKLNWV 196 Query: 178 NEW-FESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLG 236 ++ FE + +N + S+Y D++ F+ E +++E + + YY+ LGE L Sbjct: 197 YKYFFEHGEPMENVMIRQSSYRDNK--FLDEMTRQNLELLANRNPAYYKIYALGEFATLD 254 Query: 237 NNVYNMSMFHAIDACPSDDKLIG---ISFALDGGHQQSATACCAFGITAKGKVILLDTWY 293 V F + DK +G F LD G+ +A I K + + + Y Sbjct: 255 KLV-----FPKYEKRIISDKEVGHLPSYFGLDFGYVNDPSAFIHVKIDNDNKKLYVISEY 309 >gi|6775|lcl|protein:vir:96067 Length: 460 # NCBI annotation: conserved hypothetical protein ORF004 # Family: family:all:54 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294421;genbank:gi:149408318;genbank:Ge neID:5237186 Length = 460 Score = 58.5 bits (140), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/303 (26%), Positives = 124/303 (40%), Gaps = 55/303 (18%) Query: 9 INPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANTI 68 +NP ++VW + Y V+ GGR S KS A + Y+ A + R+ N I Sbjct: 4 LNPALRAVWRTRARYKVIYGGRASSKSHD-----AGGIAVYLAANYRLKFLCARQFQNRI 58 Query: 69 RDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYG-QDDFQKLKSNDIGNII 127 +SV+ + + +F T + K HK TGS F FYG + ++KS + +I+ Sbjct: 59 SESVYTLIKDKIENSEYNGEFIFTKNSIK--HKRTGSEFLFYGIARNLSEIKSTEGIDIL 116 Query: 128 PVWYEEAAEFNDQEDFDQSNVTFMRQK-------HPR--AKFVQFFWSYNPPRNPYSWIN 178 W EE A + QE ++ T ++ +P FV + PP++ + + Sbjct: 117 --WLEE-AHYLTQEQWEVIEPTIRKENSEIWIIFNPNEVTDFVYQNFVVKPPKDAFVKMI 173 Query: 179 EWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLG-EAVGLGN 237 W +E F++E ML+ I E D D ++Y G G Sbjct: 174 NW-------------------NENPFLSETMLKVIHEAYERDKDQAEHIYGGIPKTGGDK 214 Query: 238 NVYNMS-MFHAIDAC------PSDDKLIGISFALDGGHQQSATACCAFGITAKGKVIL-L 289 +V N+ + AIDA P+ K IG A DG + T G VI+ + Sbjct: 215 SVINLKFILAAIDAHKKLGWEPAGSKRIGFDVADDGEDANATTLM-------HGNVIMEV 267 Query: 290 DTW 292 D W Sbjct: 268 DEW 270 >gi|4914|lcl|protein:vir:99572 Length: 459 # NCBI annotation: TerL-like protein # Family: family:all:54 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039811;genbank:gi:126011061;genbank:Ge neID:4818267 Length = 459 Score = 56.2 bits (134), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 11/147 (7%) Query: 8 NINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANT 67 ++NP + W+ Y L GGR S KS Y+ Y + + R+ N Sbjct: 3 DLNPALRDFWLDKARYKALYGGRASSKSHDAAGFAVYLARNYTV-----KFLCARQFQNK 57 Query: 68 IRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYG-QDDFQKLKSNDIGNI 126 I +SV+ + ++ G ++F T+S I HK TG+ F FYG + ++KS + +I Sbjct: 58 ISESVYTLIKGKIDAAGWTKEFDVTIS--SIRHKKTGAEFLFYGIARNLNEIKSTEGVDI 115 Query: 127 IPVWYEEAAEFNDQEDFDQSNVTFMRQ 153 + W EE A++ +E ++ N T R+ Sbjct: 116 L--WLEE-AQYLTEEQWNVINPTIRRE 139 >gi|5142|lcl|protein:vir:105417 Length: 470 # NCBI annotation: gene 2 protein # Family: family:all:54 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958178;genbank:gi:41057280;genbank:GeneID :2716664 Length = 470 Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 133/312 (42%), Gaps = 47/312 (15%) Query: 8 NINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANT 67 +INP F+ +I + Y V KGGR S KS I L R + I+ R++ N+ Sbjct: 3 SINPIFEP-FIEAHRYKVAKGGRGSGKSWAIARLLVEAARR-----QPVRILCARELQNS 56 Query: 68 IRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYG-QDDFQKLKSNDIGNI 126 I DSV + + G + +F + I H T + F FYG +++ K+KS + I Sbjct: 57 ISDSVIRLLEDTIEREGYSAEF--EIQRSMIRHLGTNAEFMFYGIKNNPTKIKS--LEGI 112 Query: 127 IPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKT 186 W EE AE +E +D T R F + + S+ NP + +++ ++ Sbjct: 113 DICWVEE-AEAVTKESWDILIPTI------RKPFSEIWVSF----NPKNILDDTYQRFVV 161 Query: 187 NK--NYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSM 244 N + + Y D+ E + ++E K + YR+++LGE V + +M++ Sbjct: 162 NPPDDICLLTVNYTDNP--HFPEVLRLEMEECKRRNPTLYRHIWLGEPV----SASDMAI 215 Query: 245 FHA--IDACPSDDKLIG--ISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV 300 ++A K +G A+ H S T G AKG Y S G V Sbjct: 216 IKREWLEAATDAHKKLGWKAKGAVVSAHDPSDT-----GPDAKG--------YASRHGSV 262 Query: 301 VKKAPSQLSKEI 312 VK+ L +I Sbjct: 263 VKRIAEGLLMDI 274 >gi|17761|lcl|protein:vir:171 Length: 470 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112076;genbank:gi:13559866;genbank:GeneID :921009 Length = 470 Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 133/312 (42%), Gaps = 47/312 (15%) Query: 8 NINPHFKSVWISSLPYNVLKGGRNSFKSSVIVLKLAYMMIRYIIAGEAANIVVIRKVANT 67 +INP F+ +I + Y V KGGR S KS I L R + I+ R++ N+ Sbjct: 3 SINPIFEP-FIEAHRYKVAKGGRGSGKSWAIARLLVEAARR-----QPVRILCARELQNS 56 Query: 68 IRDSVFNKVWWALNLFGIAEQFTKTVSPFKIVHKTTGSTFYFYG-QDDFQKLKSNDIGNI 126 I DSV + + G + +F + I H T + F FYG +++ K+KS + I Sbjct: 57 ISDSVIRLLEDTIEREGYSAEF--EIQRSMIRHLGTNAEFMFYGIKNNPTKIKS--LEGI 112 Query: 127 IPVWYEEAAEFNDQEDFDQSNVTFMRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKT 186 W EE AE +E +D T R F + + S+ NP + +++ ++ Sbjct: 113 DICWVEE-AEAVTKESWDILIPTI------RKPFSEIWVSF----NPKNILDDTYQRFVV 161 Query: 187 NK--NYLAHSSTYLDDELGFVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSM 244 N + + Y D+ E + ++E K + YR+++LGE V + +M++ Sbjct: 162 NPPDDICLLTVNYTDNP--HFPEVLRLEMEECKRRNPTLYRHIWLGEPV----SASDMAI 215 Query: 245 FHA--IDACPSDDKLIG--ISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQV 300 ++A K +G A+ H S T G AKG Y S G V Sbjct: 216 IKREWLEAATDAHKKLGWKAKGAVVSAHDPSDT-----GPDAKG--------YASRHGSV 262 Query: 301 VKKAPSQLSKEI 312 VK+ L +I Sbjct: 263 VKRIAEGLLMDI 274 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 34/285 (11%) Query: 158 AKFVQFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIK 217 AK NPP + I + F+ T + +DD E+ I +K Sbjct: 96 AKLRYHLADLNPPAPQHPVIKDVFDVQNTRWTHWT-----MDDNPILTAERKQNIINSLK 150 Query: 218 ENDYDYYRYLYLGEAVGLGNNVYNM--SMFHAIDACPSDDKLIGISFALDGGHQQSATAC 275 +N Y Y R + LG+ V +Y + + + +DA + + + F DGG + + Sbjct: 151 KNPYLYKRDV-LGQRVMPQGVIYGLFDTEKNVLDALIGEP--VEMYFCADGGQSDATSMS 207 Query: 276 CAF--GITAKGKVIL----LDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQ 329 C + G++ + +Y+S A KA S + E+ ++ ++KY+++ + Sbjct: 208 CNIVTRVRDNGRISFRLNRVAHYYHSGADTGQVKAMSTYALELKVFIDWCVKKYQMRYTE 267 Query: 330 YTIDSAEGALRNQMF-LDFGLKWHP------VAKLRKVTM-IDSFQSLLAQGRFYYLNTE 381 +D A +LR ++ L P +K + + + I+ Q++++ G FY +N Sbjct: 268 VFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVNHS 327 Query: 382 NNKI----FIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 + F++E +Y D DN I +D+H D +Y V Sbjct: 328 EEEYDHYHFLKEIGLYSRD------DNGKPIDKDNHAMDEFRYSV 366 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 43.9 bits (102), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 63/285 (22%), Positives = 120/285 (42%), Gaps = 34/285 (11%) Query: 158 AKFVQFFWSYNPPRNPYSWINEWFESIKTNKNYLAHSSTYLDDELGFVTEQMLEDIERIK 217 AK NPP + I + F+ T + +DD E+ I +K Sbjct: 124 AKLRYHLADLNPPAPQHPVIKDVFDVQNTRWTHWT-----MDDNPILTAERKQNIINSLK 178 Query: 218 ENDYDYYRYLYLGEAVGLGNNVYNM--SMFHAIDACPSDDKLIGISFALDGGHQQSATAC 275 +N Y Y R + LG+ V +Y + + + +DA + + + F DGG + + Sbjct: 179 KNPYLYKRDV-LGQRVMPQGVIYGLFDTEKNVLDALIGEP--VEMYFCADGGQSDATSMS 235 Query: 276 CAF--GITAKGKVIL----LDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQ 329 C + G++ + +Y+S A KA S + E+ ++ ++KY+++ + Sbjct: 236 CNIVTRVRDNGRISFRLNRVAHYYHSGADTGQVKAMSTYALELKVFIDWCVKKYQMRYTE 295 Query: 330 YTIDSAEGALRNQMF-LDFGLKWHP------VAKLRKVTM-IDSFQSLLAQGRFYYLNTE 381 +D A +LR ++ L P +K + + + I+ Q++++ G FY +N Sbjct: 296 VFVDPACKSLREELHKLGVFTLGAPNNSKDVSSKAKGIEVGIERGQNIISDGAFYLVNHS 355 Query: 382 NNKI----FIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 + F++E +Y D DN I +D+H D +Y V Sbjct: 356 EEEYDHYHFLKEIGLYSRD------DNGKPIDKDNHAMDEFRYSV 394 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 42.7 bits (99), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 76/348 (21%), Positives = 133/348 (38%), Gaps = 40/348 (11%) Query: 84 GIAEQFTKTVSPFKIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIPVWYEEAAEFNDQEDF 143 G + + +T + +I + FY +G D + ++++E A + Sbjct: 96 GFSYVYHRTDNLIEITKGDVSNDFYIFGGKDESSQDLIQGLTLAGIFFDEVALMPE---- 151 Query: 144 DQSNVTFMRQKHPRAKFVQFFWSYNP-PRNPYSWIN-EWFESIKTNKNYLAHSSTYLDDE 201 +F+ Q R W +N P PY W W + +T H +DD Sbjct: 152 -----SFVNQGTGRCSVTGSKWWFNCNPDGPYHWFKVNWIDKAETKNMLYLHFD--MDDN 204 Query: 202 LGFVTEQMLEDIERIKENDYD---YYRYLYLGEAVGLGNNVYNM--SMFHAIDACPSDDK 256 L + E+I++ + Y Y RY+ V G VY+M H + P K Sbjct: 205 L-----SLSENIKKRYRSQYQGVFYQRYIQGLWTVAEGI-VYDMFSKDKHVVSTLPEMSK 258 Query: 257 LIGISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYM 316 L G ++D G Q+AT + GK L +YYS + V+K ++ + ++ A++ Sbjct: 259 L-GKYVSVDYG-TQNATVFLLWEKDIIGKYYLTREYYYSGRDENVQKTNAEYADDLTAWL 316 Query: 317 RSVIEKYRVQALQYTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTM--IDSFQSLLAQGR 374 + ID + + + + + + K R + I S+L Q + Sbjct: 317 GDT------NIDRIIIDPSAASF----IAELKKRGYKIKKARNNVLEGIRFVGSMLGQEK 366 Query: 375 FYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 + N + +E Y WDEK + IK+ DH D +YF Sbjct: 367 IAVHESCVNTL--KEFHAYVWDEKASANGEDKPIKQFDHAMDALRYFC 412 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query: 367 QSLLAQGRF-YYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 Q+ + +G+ + +N N +E Y WD+K + +K+ DH CD +YFV Sbjct: 350 QTAMNEGKIKFSMNCPN---LFKELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFV 403 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 32.0 bits (71), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%) Query: 363 IDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY 420 I + L+ +GRF NT + F EE ++Y DE N ++K +D D T+Y Sbjct: 435 IGELRDLMLEGRFKVFNT--CEPFFEEFRLYHRDE------NGKIVKTNDDVLDATRY 484 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 32.0 bits (71), Expect = 0.014, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%) Query: 363 IDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY 420 I + L+ +GRF NT + F EE ++Y DE N ++K +D D T+Y Sbjct: 417 ISELRDLMLEGRFKVFNT--CEPFFEEFRLYHRDE------NGKIVKTNDDVLDATRY 466 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 32.0 bits (71), Expect = 0.015, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%) Query: 363 IDSFQSLLAQGRFYYLNTENNKIFIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQY 420 I + L+ +GRF NT + F EE ++Y DE N ++K +D D T+Y Sbjct: 417 ISELRDLMLEGRFKAFNT--CEPFFEEFRLYHRDE------NGKIVKTNDDVLDATRY 466 >gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: gp242 # Family: family:all:11526 # MgeID: mge:1550 # MgeName: Catera # Cross-refs: genbank:acc:YP_656220;genbank:gi:109393421;genbank:GeneI D:4156748 Length = 1007 Score = 29.3 bits (64), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 4/108 (3%) Query: 270 QSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSVIEKYRVQALQ 329 ++ATA G G V D + A + ++ +EIY + ++++ A+ Sbjct: 226 KAATATSTSGRGGTGFVNCYDEY----AHMLTGTGSAKTGEEIYDAFQPALDQFGKDAMT 281 Query: 330 YTIDSAEGALRNQMFLDFGLKWHPVAKLRKVTMIDSFQSLLAQGRFYY 377 Y S + L L+W PV +R + F + G+ Y Sbjct: 282 YLASSPYCLAPDTRVLTEDLRWVPVGSVRAGDRLVGFDEHIPGGKGSY 329 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 28.5 bits (62), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 260 ISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSV 319 I+ DG TA A + G + L+ W P K P Q ++ AY+RS+ Sbjct: 713 ITLGFDGSLSNDHTALTACRVE-DGALFLVKVWV--PEKYEGHKVPRQ---DVDAYVRSM 766 Query: 320 IEKYRVQALQYTIDSAE 336 EKY V ++ + E Sbjct: 767 FEKYDVVGMRADVKEFE 783 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 28.1 bits (61), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 260 ISFALDGGHQQSATACCAFGITAKGKVILLDTWYYSPAGQVVKKAPSQLSKEIYAYMRSV 319 I+ DG TA A + G + L+ W P K P Q ++ AY+RS+ Sbjct: 372 ITLGFDGSLSNDHTALTACRVE-DGALFLVKVWV--PEKYEGHKVPRQ---DVDAYVRSM 425 Query: 320 IEKYRVQALQYTIDSAE 336 EKY V ++ + E Sbjct: 426 FEKYDVVGMRADVKEFE 442 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 27.3 bits (59), Expect = 0.33, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 204 FVTEQMLEDIERIKENDYDYY 224 + E+ L DIERI E+D+ YY Sbjct: 29 WACERFLNDIERITEDDFPYY 49 >gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398965;genbank:gi:81343949;genbank:GeneID :3778868 Length = 523 Score = 25.8 bits (55), Expect = 0.99, Method: Compositional matrix adjust. Identities = 12/45 (26%), Positives = 23/45 (51%) Query: 204 FVTEQMLEDIERIKENDYDYYRYLYLGEAVGLGNNVYNMSMFHAI 248 F ++ +ED+ +++ D + Y E V LG N+ N+ F + Sbjct: 291 FPAKESIEDLMAMRDADPYTFLSQYAQEPVALGGNLINVDWFQRL 335 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Query: 386 FIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 F +E YRW E + K D P +KE D D+ +Y + Sbjct: 356 FFDEIYQYRWKENSTK-DEP--LKEFDDVLDSVRYAI 389 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 97 KIVHKTTGSTFYFYGQDDFQKLKSNDIGNIIPVWYEEAAEFNDQEDFDQSNVTFMRQKHP 156 +I+ K T S F F + K+ D G V Y+E E+ D++ D + + +P Sbjct: 159 QIIGKATNSVFKFQTSN----AKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANP 214 Query: 157 RAKFV 161 R F+ Sbjct: 215 REFFI 219 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 25.0 bits (53), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Query: 386 FIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 F +E YRW E + K D P +KE D D+ +Y + Sbjct: 356 FFDEIYQYRWKENSTK-DEP--LKEFDDVLDSVRYAI 389 >gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238487;genbank:gi:66391763;genbank:GeneID :5176917 Length = 195 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Query: 386 FIEEHKMYRWDEKTIKSDNPSVIKEDDHTCDTTQYFV 422 F +E YRW E + K D P +KE D D+ +Y + Sbjct: 140 FFDEIYQYRWKENSTK-DEP--LKEFDDVLDSVRYAI 173 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust. Identities = 7/20 (35%), Positives = 15/20 (75%) Query: 205 VTEQMLEDIERIKENDYDYY 224 ++ L D+ER++ +D++YY Sbjct: 30 ACKRFLNDLERMESDDFEYY 49 >gi|24325|lcl|protein:vir:100809 Length: 488 # NCBI annotation: hypothetical protein # Family: family:all:1430 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164748;genbank:gi:56693161;genbank:GeneID :3197442 Length = 488 Score = 23.1 bits (48), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 151 MRQKHPRAKFVQFFWSYNPPRNPYSWINEWFESIKTN 187 M+QK A QFF++Y+ R N FE TN Sbjct: 196 MKQKELEAPSKQFFYNYSLGRPFQDTSNTLFEQDVTN 232 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.321 0.136 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,124 Number of Sequences: 514 Number of extensions: 9416 Number of successful extensions: 152 Number of sequences better than 100.0: 54 Number of HSP's better than 100.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 21 Number of HSP's gapped (non-prelim): 59 length of query: 436 length of database: 206,069 effective HSP length: 74 effective length of query: 362 effective length of database: 168,033 effective search space: 60827946 effective search space used: 60827946 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)