Query lcl|Aclame:protein:vir:395|NCBI_annot:gp10|genbank:acc:NP_046905;genbank:gi:9630475;genbank:GeneID:1261649 Match_columns 117 No_of_seqs 35 out of 55 Neff 4.4 Searched_HMMs 1612 Date Fri Nov 29 22:11:55 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_10 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_10_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:3426 Length: 117 # 100.0 2.4E-58 1.5E-61 336.5 13.0 117 1-117 1-117 (117) 2 protein:vir:395 Length: 117 # 100.0 3.8E-58 2.3E-61 335.4 13.4 117 1-117 1-117 (117) 3 protein:vir:80382 Length: 122 97.2 1.6E-05 9.8E-09 46.9 10.7 102 1-107 1-122 (122) 4 protein:vir:97237 Length: 122 96.6 7.4E-05 4.6E-08 43.2 10.4 100 1-107 1-122 (122) 5 protein:vir:104346 Length: 123 71.7 0.19 0.00012 24.5 9.9 103 5-113 1-123 (123) 6 protein:vir:96756 Length: 120 69.7 0.1 6.2E-05 26.1 5.9 105 1-117 4-118 (120) 7 protein:vir:79639 Length: 123 44.7 0.8 0.00049 21.1 8.3 102 1-113 1-123 (123) 8 protein:vir:95145 Length: 126 33.9 1.3 0.00082 19.9 9.2 103 1-110 1-126 (126) 9 protein:vir:108303 Length: 418 28.6 1.1 0.00071 20.3 4.4 115 1-117 160-322 (418) 10 protein:vir:9265 Length: 430 # 22.7 2.4 0.0015 18.5 5.6 110 1-117 185-326 (430) 11 protein:vir:100939 Length: 430 22.7 2.4 0.0015 18.5 5.6 110 1-117 185-326 (430) No 1 >protein:vir:3426 Length: 117 # NCBI annotation: head-tail joining protein # Family: family:all:1908 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040589;genbank:gi:9626253;genbank:GeneID:2703484 Probab=100.00 E-value=2.4e-58 Score=336.47 Aligned_cols=117 Identities=68% Similarity=1.171 Sum_probs=116.5 Q ss_pred CCccchhHHHHHHhhhHHHHHhcCeeEEEEecCCcceEEEEEeeCchhcccccCCeEEecCCCEEEEeechhhcccCCCe Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMSGTLSGATLVGVFDDPENIGYAGAGIRVEGTSPTLFVKTSTVSQLQRMDT 80 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~fg~~a~itsg~~~g~~v~gVFDdP~~~~~~~gGg~i~~s~P~l~~kt~Dv~~l~r~Dt 80 (117) |+|||||||+||++||++|+++||++|+|||+.+++++|+||||+||+++++++|+||++|+|+||||++||++|||+|+ T Consensus 1 m~~~dNlfd~a~~~aD~~i~~~fg~~a~i~~~~g~~~~i~gVFDdP~~~~~~~gG~~i~~s~P~L~vk~aDv~~l~r~D~ 80 (117) T protein:vir:34 1 MADFDNLFDAAIARADETIRGYMGTSATITSGEQSGAVIRGVFDDPENISYAGQGVRVEGSSPSLFVRTDEVRQLRRGDT 80 (117) T ss_pred CCcccchhHHHHhhcchhhHhhcCeeEEEEeCCCcceEEEEEecCccchhhccCCEEeecCCcEEEeeechhhccCCCCE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEECCeeEEEeeeccCCCCeEEEEeecCCCCCCCCCC Q lcl|Aclame:pro 81 LTINGRQFWVDRVGPDDCGSCHIWLGNGTPPASSRRR 117 (117) Q Consensus 81 v~I~g~~y~V~~i~pD~~G~t~i~L~rG~pp~~~~rr 117 (117) |+|+|++|||++|||||+|||+|||+||+||+++||| T Consensus 81 v~I~G~~y~V~~~~PD~~G~~~l~L~rg~pp~~~~~~ 117 (117) T protein:vir:34 81 LTIGEENFWVDRVSPDDGGSCHLWLGRGVPPAVNRRR 117 (117) T ss_pred EEECCCeeEeeecccCCCceEEEEeecCCCCccccCC Confidence 9999999999999999999999999999999999999 No 2 >protein:vir:395 Length: 117 # NCBI annotation: gp10 # Family: family:all:1908 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046905;genbank:gi:9630475;genbank:GeneID:1261649 Probab=100.00 E-value=3.8e-58 Score=335.39 Aligned_cols=117 Identities=100% Similarity=1.528 Sum_probs=116.6 Q ss_pred CCccchhHHHHHHhhhHHHHHhcCeeEEEEecCCcceEEEEEeeCchhcccccCCeEEecCCCEEEEeechhhcccCCCe Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMSGTLSGATLVGVFDDPENIGYAGAGIRVEGTSPTLFVKTSTVSQLQRMDT 80 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~fg~~a~itsg~~~g~~v~gVFDdP~~~~~~~gGg~i~~s~P~l~~kt~Dv~~l~r~Dt 80 (117) |+|||||||+||++||++|+++||++++|||+.+.+++|+||||||+|+++++||||||+++|+||||++||++|+|+|+ T Consensus 1 m~~~dNlFd~ama~aD~aI~~~~g~~a~i~~g~~~~rti~gVFDdP~~~~~~aggg~ie~saP~LfvktaDv~gl~r~D~ 80 (117) T protein:vir:39 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMSGTLSGATLVGVFDDPENIGYAGAGIRVEGTSPTLFVKTSTVSQLQRMDT 80 (117) T ss_pred CCcccchHHHHHHhhhHHHHHhcCceEEEEeCCCCceEEEEEecCccccccccCceEEeccCcEEEEeeccccccCCCCE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEECCeeEEEeeeccCCCCeEEEEeecCCCCCCCCCC Q lcl|Aclame:pro 81 LTINGRQFWVDRVGPDDCGSCHIWLGNGTPPASSRRR 117 (117) Q Consensus 81 v~I~g~~y~V~~i~pD~~G~t~i~L~rG~pp~~~~rr 117 (117) |+|+|++|||++|+|||+|+|+|+|+||+||++|||| T Consensus 81 vtI~g~~y~V~~~~pDg~G~~~l~L~rg~pp~~~~~~ 117 (117) T protein:vir:39 81 LTINGRQFWVDRVGPDDCGSCHIWLGNGTPPASSRRR 117 (117) T ss_pred EEECCCceEEeeeccCCCceEEEEeecCCCCCccCCC Confidence 9999999999999999999999999999999999999 No 3 >protein:vir:80382 Length: 122 # NCBI annotation: BcepGomrgp10 # Family: family:all:704 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210230;genbank:gi:146329922;genbank:GeneID:5123491 Probab=97.16 E-value=1.6e-05 Score=46.91 Aligned_cols=102 Identities=13% Similarity=0.124 Sum_probs=72.3 Q ss_pred CCccchhHHHHHHhhhHHHHHhcCeeEEEEecC---------------CcceEEEEEeeCchhcccccCCeEEecCCCEE Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMSGT---------------LSGATLVGVFDDPENIGYAGAGIRVEGTSPTL 65 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~fg~~a~itsg~---------------~~g~~v~gVFDdP~~~~~~~gGg~i~~s~P~l 65 (117) |++|+ +++..+.|.+- ..-||..++++-.. -+..+++|+|.+ ++.. .+.|-.|+...=.+ T Consensus 1 m~~f~--Y~rl~~~A~~L-i~kfG~~~tv~~~~~~~~~~~~~~P~t~~~~~~~v~gv~~~-y~~r-~idGtlIq~GD~~~ 75 (122) T protein:vir:80 1 MKSFN--YPRLLKTVDRL-IEKFGEECFIVEYIDAVDPTRPFDPPVRTEVRTPVKGVFVK-ATEK-HADGTLIHIGDQLV 75 (122) T ss_pred CCCcc--hhHHHHHHHHH-HHHhCCCeEEEEeeccCCCCCccccCCCceeeccceEEEec-cccc-ccCCcEEeeCCEEE Confidence 99999 67778888764 45699999986110 111258999988 3433 44677898888888 Q ss_pred EEeechhhcc-cCCCeEEECCeeEEEeeecc---CCCCeEEE-Eeec Q lcl|Aclame:pro 66 FVKTSTVSQL-QRMDTLTINGRQFWVDRVGP---DDCGSCHI-WLGN 107 (117) Q Consensus 66 ~~kt~Dv~~l-~r~Dtv~I~g~~y~V~~i~p---D~~G~t~i-~L~r 107 (117) ++-.+++..- +-+|.|.++|+.|.|..++| ++.=.|+. -|.+ T Consensus 76 ~~~a~~~~~~P~~~D~v~~~g~~~~Vi~v~p~~pag~~v~y~~q~Rk 122 (122) T protein:vir:80 76 LISGSLKREAANIKGDLFRGAEKWKMWNVVPLKPGPVNMLFKIKVSQ 122 (122) T ss_pred EEecccccccCCcCCEEEeCCeeEEEEeccccCCCCceEEEEEEEeC Confidence 8887776522 34799999999999998766 66655543 3333 No 4 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=96.63 E-value=7.4e-05 Score=43.24 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=71.7 Q ss_pred CCccchhHHHHHHhhhHHHHHhcCeeEEEEecCC-----------------cceEEEEEeeCchhcccccCCeEEecCCC Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMSGTL-----------------SGATLVGVFDDPENIGYAGAGIRVEGTSP 63 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~fg~~a~itsg~~-----------------~g~~v~gVFDdP~~~~~~~gGg~i~~s~P 63 (117) |+. +|+.-+.|.+.|.+ ||..++++-.+. ...+++|||.+=. . -.+.|..|+...= T Consensus 1 M~~----y~~~~~~a~~Li~k-fG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~-~-~~idGtlI~~GD~ 73 (122) T protein:vir:97 1 MAR----FDSAIALAKKLIKK-NGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYE-Q-RYIDGQTIRMGDQ 73 (122) T ss_pred Ccc----chHHHHHHHHHHHH-hCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccc-h-hhccCcEEeecCE Confidence 883 56678888887777 999999752221 1236899999853 2 3457889998888 Q ss_pred EEEEeechhh-cccCCCeEEECCeeEEEeeecc---CCCCeE-EEEeec Q lcl|Aclame:pro 64 TLFVKTSTVS-QLQRMDTLTINGRQFWVDRVGP---DDCGSC-HIWLGN 107 (117) Q Consensus 64 ~l~~kt~Dv~-~l~r~Dtv~I~g~~y~V~~i~p---D~~G~t-~i~L~r 107 (117) .|++-..++. .-+.+|.|.++|+.|.|..++| ++.-.+ .|.|.+ T Consensus 74 ~l~~~a~~~~~~P~~gD~v~~~g~~~~Vi~v~~i~pa~~~v~y~lqlRk 122 (122) T protein:vir:97 74 RVFMPAEGLTAPPEVEGLVLRGLEVWKVIAVKPLNPNGQAIMYELQVRQ 122 (122) T ss_pred EEEEeeCCCccccccCCEEEeCCEEEEEEeccccCCCCceEEEEEEeeC Confidence 8888766543 2445899999999999998777 555455 455665 No 5 >protein:vir:104346 Length: 123 # NCBI annotation: conserved phage-related protein # Family: family:all:704 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398974;genbank:gi:81343958;genbank:GeneID:3778878 Probab=71.75 E-value=0.19 Score=24.52 Aligned_cols=103 Identities=12% Similarity=0.026 Sum_probs=62.9 Q ss_pred chhHHHHHHhhhHHHHHhc----CeeEEEEecC-----C--------cceEEEEEeeCchhcccccCCeEEecCCCEEEE Q lcl|Aclame:pro 5 DNLFDEAMSRADGAIRGVM----GTEAKVMSGT-----L--------SGATLVGVFDDPENIGYAGAGIRVEGTSPTLFV 67 (117) Q Consensus 5 dN~Fd~ala~aD~~I~~~f----g~~a~itsg~-----~--------~g~~v~gVFDdP~~~~~~~gGg~i~~s~P~l~~ 67 (117) =| .+.|+.-=+.+..-| |....++... . ...++.|++-++.. -.+.|.-|+...=.+ . T Consensus 1 mn--Y~~l~~~a~~lI~~f~~~~gv~~~~t~~~~v~~v~G~ev~~p~~~~~~~Gv~~~y~~--r~IDG~lIq~gD~~~-i 75 (123) T protein:vir:10 1 MN--YNEIESITRDGINFFSDANGVYEMSTGAGYVEIVNGVEVEVPAQTFQLKGLVREIKT--RDIDGEFIQFGDKRG-I 75 (123) T ss_pred CC--hHHHHHHHHHHHHHhCCCCCceEEecCCCeeeCCCCceeeccceeEeeEEEeccCCh--hhccceeeeeccEEE-E Confidence 23 456665555666667 5455554311 0 11356888888853 345777777666555 5 Q ss_pred eechhhcccCCCeEEECCeeEEEee---eccCCCCeEEEEeecCCCCCC Q lcl|Aclame:pro 68 KTSTVSQLQRMDTLTINGRQFWVDR---VGPDDCGSCHIWLGNGTPPAS 113 (117) Q Consensus 68 kt~Dv~~l~r~Dtv~I~g~~y~V~~---i~pD~~G~t~i~L~rG~pp~~ 113 (117) -++|+. +|.+|.|+++|+.|.|.. +.|.+.=.|+.--.|+..--. T Consensus 76 ~~a~~e-ik~Gd~i~vdGe~~rVV~~~pikPa~~~v~y~~qlRrv~~~~ 123 (123) T protein:vir:10 76 FTAQVE-IKQGYQIKVDGETFVVVDPRPVKPTGTTVGYRPILRRVATYG 123 (123) T ss_pred EecCce-eccCCEEEECCeEEEEecCCccCccceeEEEeeeeeeeeecC Confidence 566774 899999999999999987 555666666543333222111 No 6 >protein:vir:96756 Length: 120 # NCBI annotation: hypothetical protein # Family: family:all:10478 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039822;genbank:gi:126010855;genbank:GeneID:5076266 Probab=69.75 E-value=0.1 Score=26.05 Aligned_cols=105 Identities=24% Similarity=0.372 Sum_probs=67.5 Q ss_pred CCccchhHHHHHHhhhHHHHHhcCeeEEEEecCCcceEEEEEeeCchhccc------ccCCeEEecCCCEEEEeechhhc Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMSGTLSGATLVGVFDDPENIGY------AGAGIRVEGTSPTLFVKTSTVSQ 74 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~fg~~a~itsg~~~g~~v~gVFDdP~~~~~------~~gGg~i~~s~P~l~~kt~Dv~~ 74 (117) =.||+..||- |+ ||.++++. | .-.++|-|.+-.|-+..- ..||++-.-.+-.+-+-++.+.- T Consensus 4 DDD~~sF~DP-----D~-----FG~E~~~i-G-~D~R~V~G~L~~~~~~~~L~~~~~~~GGirA~P~~~~~Q~P~~~~P~ 71 (120) T protein:vir:96 4 DDDFDTFYDP-----DD-----FGTEARLI-G-DDERPVCGLLLKGGKFNKLWREPGGKGGIKAQPTSLRFQLPSMQVPV 71 (120) T ss_pred ccccccccCc-----cc-----ccceeeee-c-CccccccccccCCCCchhhcccCCCCCceeecCcceEEecccccCCc Confidence 3566665542 33 99999987 3 444899999888743322 23666666555555555554442 Q ss_pred ccCCCeEEECCeeEEEeeeccCCCCeEEEEee----cCCCCCCCCCC Q lcl|Aclame:pro 75 LQRMDTLTINGRQFWVDRVGPDDCGSCHIWLG----NGTPPASSRRR 117 (117) Q Consensus 75 l~r~Dtv~I~g~~y~V~~i~pD~~G~t~i~L~----rG~pp~~~~rr 117 (117) =-..=.|.+.|.-|-++.+.|-+.|+.-+.|- ||+.-+.=-|- T Consensus 72 D~~~~~~~~DG~~Ys~~~V~P~G~~R~~LiLVP~~~R~~QH~~WLR~ 118 (120) T protein:vir:96 72 DYQDYVLRVDGADYSITDVEPAGSGRSELILVPFKQRGQQHGSWLRD 118 (120) T ss_pred cccceEEEecCceeeeeeeeecCcceeEEEEecchhccccccccccc Confidence 22222488999999999999999999999998 23332222121 No 7 >protein:vir:79639 Length: 123 # NCBI annotation: gp39 # Family: family:all:704 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285528;genbank:gi:148734511;genbank:GeneID:5219997 Probab=44.74 E-value=0.8 Score=21.13 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=60.1 Q ss_pred CCccchhHHHHHHhhhHHHHHhc----CeeEEEEecCC-------------cceEEEEEeeCchhcccccCCeEEecCCC Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVM----GTEAKVMSGTL-------------SGATLVGVFDDPENIGYAGAGIRVEGTSP 63 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~f----g~~a~itsg~~-------------~g~~v~gVFDdP~~~~~~~gGg~i~~s~P 63 (117) |. ..-|.+.=+.....| |..+.+|-.+. ...++.|++-++. .-.+.|.-|..+. T Consensus 1 mN------y~~l~~~~~~~I~~fsd~~G~~~~~t~~g~~~dv~G~ev~~p~~~~~~~Gv~~~~~--~reIDg~lIq~gD- 71 (123) T protein:vir:79 1 MN------YEQIRSMASAGINFFSDGTGEFDCITQPGSVEIVGGIEVEKPEIKVKIKGLVRAPR--TREVDGEVIRVTD- 71 (123) T ss_pred Cc------hHHHHHHHHHHHHhhccCCCceeeeecCcceeecCCeeccccceEEeEEEEeecCC--ccccCCeeEEecc- Confidence 43 223344334466778 88888873211 1136788988874 2344566665544 Q ss_pred EEEEeechhhcccCCCeEEECCeeEEEeee---ccCCCCeEEE-EeecCCCCCC Q lcl|Aclame:pro 64 TLFVKTSTVSQLQRMDTLTINGRQFWVDRV---GPDDCGSCHI-WLGNGTPPAS 113 (117) Q Consensus 64 ~l~~kt~Dv~~l~r~Dtv~I~g~~y~V~~i---~pD~~G~t~i-~L~rG~pp~~ 113 (117) .+++-++|+. ||.+|.++|+|+.|.|..+ .|-+.=.|+. .|.| ..-.. T Consensus 72 vk~i~~a~ve-ik~Gd~i~vDge~~rVV~~~pvkPa~~~I~y~~qLRr-v~~~~ 123 (123) T protein:vir:79 72 KLGVFNADVE-LKNGYQIDIDGERYVMVETRPIRPTSITVAYRPIMRR-VAVHG 123 (123) T ss_pred EEEEEeccee-eccCCEEEECCeEEEEecCccccchhhhhhhhhhhcc-cccCC Confidence 4566677774 9999999999999999974 4444433332 2222 11000 No 8 >protein:vir:95145 Length: 126 # NCBI annotation: hypothetical protein ORF014 # Family: family:all:704 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293421;genbank:gi:148912842;genbank:GeneID:5228220 Probab=33.87 E-value=1.3 Score=19.91 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=59.5 Q ss_pred CCccchhHHHHHHhhhHHHHHhcCeeEEEEe---cC---------C-----cceEEEEEeeCchhcc----cc-cCCeEE Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVMGTEAKVMS---GT---------L-----SGATLVGVFDDPENIG----YA-GAGIRV 58 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~fg~~a~its---g~---------~-----~g~~v~gVFDdP~~~~----~~-~gGg~i 58 (117) |+. |+++++.|+.-| .-||++|.++- +. . ...+++++|=. +..+ ++ +.|-.| T Consensus 1 ma~----y~rl~ata~rLI-aK~Gq~~~~r~~~~~~~~DP~~p~~p~~~t~~d~p~t~v~l~-yd~r~~~~~~~idGt~I 74 (126) T protein:vir:95 1 MAQ----FDRAIKTAQRLI-AKNGEKVKWRVIEDVTPTDPNKPWEPGPALPEDKDVTICFLP-VDRQTQETFNFIKGTEV 74 (126) T ss_pred Ccc----hHHHHHHHHHHH-HHhCCceEEEEEeeccCCCCccCCCCCCCceeecccceEEec-ccccccchhhhccccee Confidence 885 567899999755 56899888442 22 2 11367888842 2222 22 567777 Q ss_pred ecCCCEEEEeechhhcccCCCeEEECCeeEEEeeeccCC-CCeEEEEeecCCC Q lcl|Aclame:pro 59 EGTSPTLFVKTSTVSQLQRMDTLTINGRQFWVDRVGPDD-CGSCHIWLGNGTP 110 (117) Q Consensus 59 ~~s~P~l~~kt~Dv~~l~r~Dtv~I~g~~y~V~~i~pD~-~G~t~i~L~rG~p 110 (117) ...+=.++..-.-++ =+-+|.|+.||+.|.|..++|-. .|-..++=-.=+. T Consensus 75 ~~GD~~i~i~gl~~a-p~vgd~V~~~g~~~~ivav~pl~P~gvavLy~l~~~~ 126 (126) T protein:vir:95 75 PKGSVMGLMGNVPFA-PNLKDVVIRNGVELRLAYIDVLSPNGQKVLYTMVFQA 126 (126) T ss_pred ccCcEEEEecccccc-cccCceEEECcEEEEEEeeeeeCCCcceeeeeeeecC Confidence 766666665211111 24569999999999988876622 2333222111111 No 9 >protein:vir:108303 Length: 418 # NCBI annotation: hypothetical protein # Family: family:all:1412 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552282;genbank:gi:160700607;genbank:GeneID:5758819 Probab=28.62 E-value=1.1 Score=20.27 Aligned_cols=115 Identities=20% Similarity=0.150 Sum_probs=43.6 Q ss_pred CCc-cchh-HHHHHHhhhHHHHHhcCeeEEEEecCCcceEEEE--EeeCchhccccc---CC-eEEec---CCCEEEE-- Q lcl|Aclame:pro 1 MAD-FDNL-FDEAMSRADGAIRGVMGTEAKVMSGTLSGATLVG--VFDDPENIGYAG---AG-IRVEG---TSPTLFV-- 67 (117) Q Consensus 1 m~~-fdN~-Fd~ala~aD~~I~~~fg~~a~itsg~~~g~~v~g--VFDdP~~~~~~~---gG-g~i~~---s~P~l~~-- 67 (117) ++- +=++ +.++|.+.+......-+....+..|.. | .|-| ||.+..-..... +| .=+.+ +.=.+.+ T Consensus 160 ~R~lVv~P~~~~~L~~~~~~~~~~~~~~~~lr~G~I-G-~i~GF~V~~S~nip~~tag~~~~t~~v~ga~~~~~~~~~~~ 237 (418) T protein:vir:10 160 MRHAVLDPFTCASLSDEVTKLFKESMVEQAYKMGYR-G-NVAAYEVYESQNLPKHTVGDHGGTPLVNGTVVNGDTVGFDG 237 (418) T ss_pred ceEEEeCHHHHHHHhhhccccccccccchhhheeee-e-eeeceEEEEecCCCcccccccccceeeecccccceeEEEee Confidence 000 0011 122333222111100000000101100 0 1111 334331111111 11 11211 1111211 Q ss_pred ee-chhhcccCCCeEEECC---------------eeEEEee-eccCCCCeEEEEeecC-------C-----------CCC Q lcl|Aclame:pro 68 KT-STVSQLQRMDTLTING---------------RQFWVDR-VGPDDCGSCHIWLGNG-------T-----------PPA 112 (117) Q Consensus 68 kt-~Dv~~l~r~Dtv~I~g---------------~~y~V~~-i~pD~~G~t~i~L~rG-------~-----------pp~ 112 (117) -+ ++--.|+++|.++|+| +.|.|+. +.++-+|.+.|+|... . +++ T Consensus 238 ~t~s~~g~l~~Gd~~ti~gv~~v~~~t~~~~~~~~~f~V~~~~~~~~~~~~tv~i~p~~~~~~~~~~~~~~~~~~~~~~~ 317 (418) T protein:vir:10 238 GTASTTGFLKAGDVITFGGVFGVNPQNYETTGLLQEFVVLEDVDTDAGGAGSIKISPSLNDGTATINNENGDPVSLTAYQ 317 (418) T ss_pred cceeeccceeeccEEEECceeecccccccccccceEEEEEeeccccccCcceeEeccccccccccccccccccccccCCC Confidence 12 2224499999999998 8999987 6899999999998731 1 111 Q ss_pred CCCCC Q lcl|Aclame:pro 113 SSRRR 117 (117) Q Consensus 113 ~~~rr 117 (117) +.... T Consensus 318 ~v~a~ 322 (418) T protein:vir:10 318 NVTAL 322 (418) T ss_pred ccccc Confidence 11111 No 10 >protein:vir:9265 Length: 430 # NCBI annotation: 5 # Family: family:all:1412 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720329;genbank:gi:24371587;genbank:GeneID:955820 Probab=22.70 E-value=2.4 Score=18.49 Aligned_cols=110 Identities=25% Similarity=0.319 Sum_probs=44.6 Q ss_pred CCccchhHHHHHHhhhHHHHHhc-Cee-------EEEE-ecCCcceEEEEEee-CchhcccccCCe--EEecCCCEEEEe Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVM-GTE-------AKVM-SGTLSGATLVGVFD-DPENIGYAGAGI--RVEGTSPTLFVK 68 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~f-g~~-------a~it-sg~~~g~~v~gVFD-dP~~~~~~~gGg--~i~~s~P~l~~k 68 (117) +..+++.=.+|+. +..|.+-| |+. ++.| -+...+.+|+|=.- .+...+....|. -+......+.+. T Consensus 185 l~~~~~~~~~A~r--~g~i~~~~~Gfd~~~~~~~~~~~t~g~~t~~tv~gA~~~~~~~~~v~~~g~~~~~d~~~~tit~s 262 (430) T protein:vir:92 185 RDIFGRIPEEAYR--DGTIQRQVAGFDDVLRSPKLPVLTKSTATGITVSGAQSFKPVAWQLDNDGNKVNVDNRFATVTLS 262 (430) T ss_pred ccccccchhHHHh--hccccccchhhhhhhhcCCcccccCccCcCceeccccccccccceecccccccccccccceeeee Confidence 1111111112332 22222222 211 1122 22233345554432 111111111222 233444566665 Q ss_pred echhhcccCCCeEEECC---------------eeEEEeeeccCCCCeEEEEeecCCCCCC-----CCCC Q lcl|Aclame:pro 69 TSTVSQLQRMDTLTING---------------RQFWVDRVGPDDCGSCHIWLGNGTPPAS-----SRRR 117 (117) Q Consensus 69 t~Dv~~l~r~Dtv~I~g---------------~~y~V~~i~pD~~G~t~i~L~rG~pp~~-----~~rr 117 (117) .. .+|+++|.++|.| +.|.|+... + +..-.|+.. .-||.+ ..+. T Consensus 263 ~t--g~l~~GD~ftiaGV~~v~~~tkq~~~~l~~F~Vt~~~-~-atsv~I~pa-ii~~~~~~~~~~~~~ 326 (430) T protein:vir:92 263 AT--TGLKRGDKISFTGVKFLGQMAKNVLAQDATFSVVRVV-D-GTHVEITPK-PVALDDVSLSPEQRA 326 (430) T ss_pred cc--cceecccEEEecceeeeccccccccCCccEEEEEEec-C-CceeEEecc-ccccccccccccccc Confidence 55 4699999999999 579998743 2 233444442 333311 0111 No 11 >protein:vir:100939 Length: 430 # NCBI annotation: Gp5 # Family: family:all:1412 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006408;genbank:gi:46358700;genbank:GeneID:2777089 Probab=22.70 E-value=2.4 Score=18.49 Aligned_cols=110 Identities=25% Similarity=0.319 Sum_probs=44.6 Q ss_pred CCccchhHHHHHHhhhHHHHHhc-Cee-------EEEE-ecCCcceEEEEEee-CchhcccccCCe--EEecCCCEEEEe Q lcl|Aclame:pro 1 MADFDNLFDEAMSRADGAIRGVM-GTE-------AKVM-SGTLSGATLVGVFD-DPENIGYAGAGI--RVEGTSPTLFVK 68 (117) Q Consensus 1 m~~fdN~Fd~ala~aD~~I~~~f-g~~-------a~it-sg~~~g~~v~gVFD-dP~~~~~~~gGg--~i~~s~P~l~~k 68 (117) +..+++.=.+|+. +..|.+-| |+. ++.| -+...+.+|+|=.- .+...+....|. -+......+.+. T Consensus 185 l~~~~~~~~~A~r--~g~i~~~~~Gfd~~~~~~~~~~~t~g~~t~~tv~gA~~~~~~~~~v~~~g~~~~~d~~~~tit~s 262 (430) T protein:vir:10 185 RDIFGRIPEEAYR--DGTIQRQVAGFDDVLRSPKLPVLTKSTATGITVSGAQSFKPVAWQLDNDGNKVNVDNRFATVTLS 262 (430) T ss_pred ccccccchhHHHh--hccccccchhhhhhhhcCCcccccCccCcCceeccccccccccceecccccccccccccceeeee Confidence 1111111112332 22222222 211 1122 22233345554432 111111111222 233444566665 Q ss_pred echhhcccCCCeEEECC---------------eeEEEeeeccCCCCeEEEEeecCCCCCC-----CCCC Q lcl|Aclame:pro 69 TSTVSQLQRMDTLTING---------------RQFWVDRVGPDDCGSCHIWLGNGTPPAS-----SRRR 117 (117) Q Consensus 69 t~Dv~~l~r~Dtv~I~g---------------~~y~V~~i~pD~~G~t~i~L~rG~pp~~-----~~rr 117 (117) .. .+|+++|.++|.| +.|.|+... + +..-.|+.. .-||.+ ..+. T Consensus 263 ~t--g~l~~GD~ftiaGV~~v~~~tkq~~~~l~~F~Vt~~~-~-atsv~I~pa-ii~~~~~~~~~~~~~ 326 (430) T protein:vir:10 263 AT--TGLKRGDKISFTGVKFLGQMAKNVLAQDATFSVVRVV-D-GTHVEITPK-PVALDDVSLSPEQRA 326 (430) T ss_pred cc--cceecccEEEecceeeeccccccccCCccEEEEEEec-C-CceeEEecc-ccccccccccccccc Confidence 55 4699999999999 579998743 2 233444442 333311 0111 Done!