Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Severus | Genbank acc : NC_021307

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 80

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	11	lcl\|NC_021307.1_cdsid_YP_008051783.1	HHsearch (proba=100.00%)
Portal	8	lcl\|NC_021307.1_cdsid_YP_008051780.1	HHsearch (proba=100.00%)
TermL	7	lcl\|NC_021307.1_cdsid_YP_008051779.1	Blast (e-value=0)
MTP	18	lcl\|NC_021307.1_cdsid_YP_008051790.1	Blast (e-value=1e-80)
Sheath	NOT FOUND
Ad1	13	lcl\|NC_021307.1_cdsid_YP_008051785.1	HHsearch (proba=100.00%)
Hc1	15	lcl\|NC_021307.1_cdsid_YP_008051787.1	HHsearch (proba=100.00%)
Ne1	16	lcl\|NC_021307.1_cdsid_YP_008051788.1	HHsearch (proba=100.00%)
Tc1	17	lcl\|NC_021307.1_cdsid_YP_008051789.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:104085 protein:vir:4226 protein:vir:2430	Che12 L5 D29	77 % 76 % 74 %
Portal	protein:vir:7768 protein:vir:104082 protein:vir:4223	Bxz2 Che12 L5	66 % 58 % 58 %
TermL	protein:vir:7767 protein:vir:2340 protein:vir:4222	Bxz2 Bxb1 L5	77 % 71 % 70 %
MTP	protein:vir:7778 protein:vir:104093 protein:vir:2437	Bxz2 Che12 D29	74 % 65 % 64 %
Ad1	protein:vir:7773 protein:vir:2345 protein:vir:4228	Bxz2 Bxb1 L5	61 % 49 % 48 %
Hc1	protein:vir:7775 protein:vir:104090 protein:vir:4229	Bxz2 Che12 L5	68 % 58 % 56 %
Ne1	protein:vir:78503 protein:vir:78298 protein:vir:2347	U2 Bethlehem Bxb1	52 % 52 % 52 %
Tc1	protein:vir:7777 protein:vir:2436 protein:vir:104092	Bxz2 D29 Che12	72 % 62 % 60 %