Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : pYD21-A | Genbank acc : NC_020846

Category to which the Query Phage was assigned : Siphoviridae of Type1 (No Cluster Assigned)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 74

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	25	lcl\|NC_020846.1_cdsid_YP_007673987.1	HHsearch (proba=100.00%)
Portal	7	lcl\|NC_020846.1_cdsid_YP_007673969.1	HHsearch (proba=100.00%)
TermL	68	lcl\|NC_020846.1_cdsid_YP_007674030.1	Blast (e-value=6e-69)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	29	lcl\|NC_020846.1_cdsid_YP_007673991.1	HHsearch (proba=94.90%)
Hc1	30	lcl\|NC_020846.1_cdsid_YP_007673992.1	HHsearch (proba=100.00%)
Ne1	31	lcl\|NC_020846.1_cdsid_YP_007673993.1	HHsearch (proba=100.00%)
Tc1	32	lcl\|NC_020846.1_cdsid_YP_007673994.1	HHsearch (proba=94.42%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105778 protein:vir:80068 protein:vir:5255	ES18 B054 Aaphi23	19 % 12 % 15 %
Portal	protein:vir:105782 protein:vir:104338 protein:vir:5249	ES18 RTP Aaphi23	21 % 16 % 16 %
TermL	protein:vir:96067 protein:vir:99572 protein:vir:105705	F8 BcepF1 ES18	32 % 32 % 26 %
Ad1	protein:vir:105776	ES18	22 %
Hc1	protein:vir:105774	ES18	23 %
Ne1	protein:vir:105773 protein:vir:98409 protein:vir:743	ES18 ul36 Tuc2009	30 % 19 % 19 %
Tc1	protein:vir:105772	ES18	23 %