Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phi7401PVL | Genbank acc : NC_020199

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 44

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	26	lcl\|NC_020199.1_cdsid_YP_007392389.1	HHsearch (proba=100.00%)
Portal	24	lcl\|NC_020199.1_cdsid_YP_007392387.1	HHsearch (proba=100.00%)
TermL	23	lcl\|NC_020199.1_cdsid_YP_007392386.1	Blast (e-value=0)
MTP	30	lcl\|NC_020199.1_cdsid_YP_007392393.1	Blast (e-value=1e-124)
Sheath	NOT FOUND
Ad1	27	lcl\|NC_020199.1_cdsid_YP_007392390.1	HHsearch (proba=99.95%)
Hc1	NOT FOUND
Ne1	28	lcl\|NC_020199.1_cdsid_YP_007392391.1	HHsearch (proba=100.00%)
Tc1	29	lcl\|NC_020199.1_cdsid_YP_007392392.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9361 protein:vir:96978 protein:vir:94424	phi 12 42e 47	100 % 100 % 100 %
Portal	protein:vir:2683 protein:vir:93943 protein:vir:96980	phiSLT 3A 42e	100 % 100 % 99 %
TermL	protein:vir:93883 protein:vir:78630 protein:vir:94427	3A tp310-2 47	100 % 99 % 99 %
MTP	protein:vir:78634 protein:vir:96971 protein:vir:94417	tp310-2 42e 47	100 % 100 % 100 %
Ad1	protein:vir:78636 protein:vir:96976 protein:vir:94422	tp310-2 42e 47	98 % 98 % 98 %
Ne1	protein:vir:78644 protein:vir:96973 protein:vir:94419	tp310-2 42e 47	97 % 97 % 97 %
Tc1	protein:vir:93902 protein:vir:94418 protein:vir:78648	3A 47 tp310-2	98 % 97 % 96 %