Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : AQ113 | Genbank acc : NC_019782

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 56

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	9	lcl\|NC_019782.1_cdsid_YP_007173607.1	HHsearch (proba=100.00%)
Portal	5	lcl\|NC_019782.1_cdsid_YP_007173603.1	HHsearch (proba=100.00%)
TermL	4	lcl\|NC_019782.1_cdsid_YP_007173602.1	Blast (e-value=2e-99)
MTP	15	lcl\|NC_019782.1_cdsid_YP_007173613.1	Blast (e-value=4e-57)
Sheath	14	lcl\|NC_019782.1_cdsid_YP_007173612.1	HHsearch (proba=100.00%)
Ad1	10	lcl\|NC_019782.1_cdsid_YP_007173608.1	HHsearch (proba=100.00%)
Hc1	11	lcl\|NC_019782.1_cdsid_YP_007173609.1	HHsearch (proba=98.93%)
Ne1	NOT FOUND
Tc1	12	lcl\|NC_019782.1_cdsid_YP_007173610.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105464 protein:vir:79008 protein:vir:99523	KC5a phiC2 Lj928	72 % 40 % 27 %
Portal	protein:vir:105461 protein:vir:102950 protein:vir:102330	KC5a EJ-1 phi CD119	59 % 41 % 31 %
TermL	protein:vir:105460 protein:vir:2731 protein:vir:4897	KC5a O1205 Sfi11	80 % 40 % 39 %
MTP	protein:vir:105471 protein:vir:79038 protein:vir:102914	KC5a phiC2 EJ-1	62 % 36 % 32 %
Sheath	protein:vir:105470 protein:vir:102957 protein:vir:78986	KC5a EJ-1 phiC2	52 % 37 % 27 %
Ad1	protein:vir:79050 protein:vir:102336 protein:vir:102961	phiC2 phi CD119 EJ-1	26 % 24 % 18 %
Hc1	protein:vir:105466 protein:vir:102962 protein:vir:78985	KC5a EJ-1 phiC2	55 % 20 % 22 %
Tc1	protein:vir:105468 protein:vir:79047 protein:vir:102955	KC5a phiC2 EJ-1	37 % 26 % 26 %