Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP NOT FOUND
Portal 50 lcl|NC_019527.1_cdsid_YP_007007739.1 HHsearch (proba=100.00%)
TermL 48 lcl|NC_019527.1_cdsid_YP_007007737.1 Blast (e-value=3e-57)
MTP NOT FOUND
Sheath 65 lcl|NC_019527.1_cdsid_YP_007007754.1 HHsearch (proba=100.00%)
Ad1 60 lcl|NC_019527.1_cdsid_YP_007007749.1 HHsearch (proba=100.00%)
Hc1 63 lcl|NC_019527.1_cdsid_YP_007007752.1 HHsearch (proba=100.00%)
Ne1 62 lcl|NC_019527.1_cdsid_YP_007007751.1 HHsearch (proba=100.00%)
Tc1 64 lcl|NC_019527.1_cdsid_YP_007007753.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.



Proteins Superfamilies Observed Intergene Distance Expected Intergene Distance
Ad1<->Hc1 3 2


Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
Portal protein:vir:94049
protein:vir:78589
protein:vir:106716
OP2
BcepNY3
Bcep1
36 %
35 %
35 %
TermL protein:vir:103223
protein:vir:80106
protein:vir:78588
JK06
B054
BcepNY3
35 %
32 %
27 %
Sheath protein:vir:106730
protein:vir:101576
protein:vir:78611
Bcep1
Bcep43
BcepNY3
42 %
42 %
41 %
Ad1 protein:vir:94064
protein:vir:78595
protein:vir:106739
OP2
BcepNY3
Bcep1
49 %
42 %
42 %
Hc1 protein:vir:94034
protein:vir:101560
protein:vir:77651
OP2
Bcep43
Bcep781
38 %
33 %
33 %
Ne1 protein:vir:96105
protein:vir:77650
protein:vir:78607
F8
Bcep781
BcepNY3
32 %
29 %
28 %
Tc1 protein:vir:106763
protein:vir:78612
protein:vir:101569
Bcep1
BcepNY3
Bcep43
24 %
23 %
22 %