Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : vB_AsaM-56 | Genbank acc : NC_019527

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 7) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 83

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	NOT FOUND
Portal	50	lcl\|NC_019527.1_cdsid_YP_007007739.1	HHsearch (proba=100.00%)
TermL	48	lcl\|NC_019527.1_cdsid_YP_007007737.1	Blast (e-value=3e-57)
MTP	NOT FOUND
Sheath	65	lcl\|NC_019527.1_cdsid_YP_007007754.1	HHsearch (proba=100.00%)
Ad1	60	lcl\|NC_019527.1_cdsid_YP_007007749.1	HHsearch (proba=100.00%)
Hc1	63	lcl\|NC_019527.1_cdsid_YP_007007752.1	HHsearch (proba=100.00%)
Ne1	62	lcl\|NC_019527.1_cdsid_YP_007007751.1	HHsearch (proba=100.00%)
Tc1	64	lcl\|NC_019527.1_cdsid_YP_007007753.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Ad1<->Hc1	3	2

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
Portal	protein:vir:94049 protein:vir:78589 protein:vir:106716	OP2 BcepNY3 Bcep1	36 % 35 % 35 %
TermL	protein:vir:103223 protein:vir:80106 protein:vir:78588	JK06 B054 BcepNY3	35 % 32 % 27 %
Sheath	protein:vir:106730 protein:vir:101576 protein:vir:78611	Bcep1 Bcep43 BcepNY3	42 % 42 % 41 %
Ad1	protein:vir:94064 protein:vir:78595 protein:vir:106739	OP2 BcepNY3 Bcep1	49 % 42 % 42 %
Hc1	protein:vir:94034 protein:vir:101560 protein:vir:77651	OP2 Bcep43 Bcep781	38 % 33 % 33 %
Ne1	protein:vir:96105 protein:vir:77650 protein:vir:78607	F8 Bcep781 BcepNY3	32 % 29 % 28 %
Tc1	protein:vir:106763 protein:vir:78612 protein:vir:101569	Bcep1 BcepNY3 Bcep43	24 % 23 % 22 %