Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 230 lcl|NC_019500.1_cdsid_YP_007004271.1 HHsearch (proba=100.00%)
Portal 235 lcl|NC_019500.1_cdsid_YP_007004276.1 HHsearch (proba=100.00%)
TermL 241 lcl|NC_019500.1_cdsid_YP_007004282.1 Blast (e-value=0)
MTP 238 lcl|NC_019500.1_cdsid_YP_007004279.1 Blast (e-value=2e-96)
Sheath 240 lcl|NC_019500.1_cdsid_YP_007004281.1 HHsearch (proba=100.00%)
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 245 lcl|NC_019500.1_cdsid_YP_007004286.1 HHsearch (proba=100.00%)
Hc2 244 lcl|NC_019500.1_cdsid_YP_007004285.1 HHsearch (proba=100.00%)
Tc2 243 lcl|NC_019500.1_cdsid_YP_007004284.1 HHsearch (proba=100.00%)
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:107947
protein:vir:7214
protein:vir:103463
JS98
T4
RB32
98 %
85 %
84 %
Portal protein:vir:108049
protein:vir:7208
protein:vir:6896
JS98
T4
RB69
98 %
78 %
78 %
TermL protein:vir:108053
protein:vir:6893
protein:vir:103455
JS98
RB69
RB32
99 %
85 %
83 %
MTP protein:vir:108048
protein:vir:6895
protein:vir:98264
JS98
RB69
RB43
100 %
75 %
74 %
Sheath protein:vir:108052
protein:vir:103456
protein:vir:7206
JS98
RB32
T4
96 %
72 %
71 %
Ad2 protein:vir:107900
protein:vir:103451
protein:vir:7198
JS98
RB32
T4
99 %
66 %
66 %
Hc2 protein:vir:107937
protein:vir:103452
protein:vir:7199
JS98
RB32
T4
99 %
69 %
69 %
Tc2 protein:vir:107931
protein:vir:6891
protein:vir:7200
JS98
RB69
T4
99 %
59 %
58 %