Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiNJ2 | Genbank acc : NC_019418

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 55

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	21	lcl\|NC_019418.1_cdsid_YP_006990340.1	HHsearch (proba=100.00%)
Portal	24	lcl\|NC_019418.1_cdsid_YP_006990343.1	HHsearch (proba=100.00%)
TermL	25	lcl\|NC_019418.1_cdsid_YP_006990344.1	Blast (e-value=0)
MTP	14	lcl\|NC_019418.1_cdsid_YP_006990333.1	Blast (e-value=3e-42)
Sheath	NOT FOUND
Ad1	18	lcl\|NC_019418.1_cdsid_YP_006990337.1	HHsearch (proba=100.00%)
Hc1	17	lcl\|NC_019418.1_cdsid_YP_006990336.1	HHsearch (proba=100.00%)
Ne1	16	lcl\|NC_019418.1_cdsid_YP_006990335.1	HHsearch (proba=100.00%)
Tc1	15	lcl\|NC_019418.1_cdsid_YP_006990334.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9820 protein:vir:3033 protein:vir:3613	315.4 PhiNIH1.1 TP901-1	51 % 51 % 49 %
Portal	protein:vir:4782 protein:vir:9815 protein:vir:3028	MM1 315.4 PhiNIH1.1	77 % 63 % 63 %
TermL	protein:vir:4781 protein:vir:98922 protein:vir:80960	MM1 BCJA1c A500	78 % 66 % 53 %
MTP	protein:vir:4792 protein:vir:98876 protein:vir:9825	MM1 BCJA1c 315.4	53 % 50 % 45 %
Ad1	protein:vir:4788 protein:vir:9821 protein:vir:3034	MM1 315.4 PhiNIH1.1	72 % 49 % 47 %
Hc1	protein:vir:4789 protein:vir:9822 protein:vir:3035	MM1 315.4 PhiNIH1.1	58 % 43 % 43 %
Ne1	protein:vir:4790 protein:vir:9823 protein:vir:3036	MM1 315.4 PhiNIH1.1	48 % 44 % 44 %
Tc1	protein:vir:4791 protein:vir:9824 protein:vir:3037	MM1 315.4 PhiNIH1.1	53 % 44 % 44 %