Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : ZZ1 | Genbank acc : NC_018087

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 402

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	331	lcl\|NC_018087.1_cdsid_YP_006489115.1	HHsearch (proba=100.00%)
Portal	339	lcl\|NC_018087.1_cdsid_YP_006489123.1	HHsearch (proba=100.00%)
TermL	346	lcl\|NC_018087.1_cdsid_YP_006489130.1	Blast (e-value=0)
MTP	341	lcl\|NC_018087.1_cdsid_YP_006489125.1	Blast (e-value=2e-72)
Sheath	343	lcl\|NC_018087.1_cdsid_YP_006489127.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	355	lcl\|NC_018087.1_cdsid_YP_006489139.1	HHsearch (proba=100.00%)
Hc2	354	lcl\|NC_018087.1_cdsid_YP_006489138.1	HHsearch (proba=100.00%)
Tc2	352	lcl\|NC_018087.1_cdsid_YP_006489136.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107947 protein:vir:6901 protein:vir:103463	JS98 RB69 RB32	72 % 72 % 72 %
Portal	protein:vir:6896 protein:vir:108049 protein:vir:103458	RB69 JS98 RB32	66 % 65 % 65 %
TermL	protein:vir:108053 protein:vir:103455 protein:vir:7202	JS98 RB32 T4	72 % 72 % 72 %
MTP	protein:vir:108048 protein:vir:103457 protein:vir:7207	JS98 RB32 T4	72 % 67 % 67 %
Sheath	protein:vir:108052 protein:vir:6894 protein:vir:103456	JS98 RB69 RB32	73 % 70 % 69 %
Ad2	protein:vir:107900 protein:vir:7198 protein:vir:103451	JS98 T4 RB32	61 % 60 % 59 %
Hc2	protein:vir:103452 protein:vir:7199 protein:vir:107937	RB32 T4 JS98	70 % 69 % 68 %
Tc2	protein:vir:107931 protein:vir:81023 protein:vir:6591	JS98 Phi1 RB49	57 % 54 % 54 %