Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Bf7 | Genbank acc : NC_016764

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster.

Number of sequences analyzed : 46

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

Click on the image to download it as png (download in pdf or svg format)

ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	35	lcl\|NC_016764.1_cdsid_YP_005098192.1	HHsearch (proba=100.00%)
Portal	33	lcl\|NC_016764.1_cdsid_YP_005098190.1	HHsearch (proba=100.00%)
TermL	45	lcl\|NC_016764.1_cdsid_YP_005098202.1	Blast (e-value=1e-117)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	36	lcl\|NC_016764.1_cdsid_YP_005098193.1	HHsearch (proba=100.00%)
Hc3	37	lcl\|NC_016764.1_cdsid_YP_005098194.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:105645 protein:vir:97031 protein:vir:7019	K1E K1-5 SP6	25 % 25 % 25 %
Portal	protein:vir:94709 protein:vir:10447 protein:vir:3361	K1F phiA1122 T3	32 % 30 % 30 %
TermL	protein:vir:7028 protein:vir:103312 protein:vir:80218	SP6 Era103 LKA1	40 % 39 % 38 %
Ad3	protein:vir:1780 protein:vir:3365 protein:vir:1542	P60 T3 phiYeO3-12	33 % 28 % 28 %
Hc3	protein:vir:80253 protein:vir:103341 protein:vir:78957	LKA1 Era103 LKD16	22 % 21 % 20 %