Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : LKD16 | Genbank acc : NC_009935 | Aclame index mge :1860

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 53

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|Aclame:protein:vir:78935\|NCBI_annot:capsid	HHsearch (proba=100.00%)
Portal	34	lcl\|Aclame:protein:vir:78942\|NCBI_annot:putative	HHsearch (proba=100.00%)
TermL	47	lcl\|Aclame:protein:vir:78939\|NCBI_annot:putative	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	37	lcl\|Aclame:protein:vir:78929\|NCBI_annot:putative	HHsearch (proba=100.00%)
Hc3	38	lcl\|Aclame:protein:vir:78957\|NCBI_annot:putative	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:78935 protein:vir:6324 protein:vir:80213	LKD16 phiKMV LKA1	100 % 93 % 48 %
Portal	protein:vir:78942 protein:vir:6322 protein:vir:80211	LKD16 phiKMV LKA1	100 % 98 % 46 %
TermL	protein:vir:78939 protein:vir:6335 protein:vir:80218	LKD16 phiKMV LKA1	100 % 97 % 59 %
Ad3	protein:vir:78929 protein:vir:6325 protein:vir:80215	LKD16 phiKMV LKA1	100 % 96 % 39 %
Hc3	protein:vir:78957 protein:vir:6326 protein:vir:80253	LKD16 phiKMV LKA1	100 % 95 % 39 %