Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


ERROR_IN_GENERATING_GENECONTEXT_FIGURE. Contact Webmaster. ERROR_IN_GENERATING_TREE_FIGURE. Contact Webmaster.

Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 36 lcl|Aclame:protein:vir:78935|NCBI_annot:capsid HHsearch (proba=100.00%)
Portal 34 lcl|Aclame:protein:vir:78942|NCBI_annot:putative HHsearch (proba=100.00%)
TermL 47 lcl|Aclame:protein:vir:78939|NCBI_annot:putative Blast (e-value=0)
MTP NOT FOUND
Sheath NOT FOUND
Ad1 NOT FOUND
Hc1 NOT FOUND
Ne1 NOT FOUND
Tc1 NOT FOUND
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 37 lcl|Aclame:protein:vir:78929|NCBI_annot:putative HHsearch (proba=100.00%)
Hc3 38 lcl|Aclame:protein:vir:78957|NCBI_annot:putative HHsearch (proba=100.00%)
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:78935
protein:vir:6324
protein:vir:80213
LKD16
phiKMV
LKA1
100 %
93 %
48 %
Portal protein:vir:78942
protein:vir:6322
protein:vir:80211
LKD16
phiKMV
LKA1
100 %
98 %
46 %
TermL protein:vir:78939
protein:vir:6335
protein:vir:80218
LKD16
phiKMV
LKA1
100 %
97 %
59 %
Ad3 protein:vir:78929
protein:vir:6325
protein:vir:80215
LKD16
phiKMV
LKA1
100 %
96 %
39 %
Hc3 protein:vir:78957
protein:vir:6326
protein:vir:80253
LKD16
phiKMV
LKA1
100 %
95 %
39 %