Virfam_CNT_analysis

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : phiA1122 | Genbank acc : NC_004777 | Aclame index mge :184

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 50

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	35	lcl\|Aclame:protein:vir:10450\|NCBI_annot:major	HHsearch (proba=100.00%)
Portal	32	lcl\|Aclame:protein:vir:10447\|NCBI_annot:head-to-tail	HHsearch (proba=100.00%)
TermL	47	lcl\|Aclame:protein:vir:10462\|NCBI_annot:DNA	Blast (e-value=0)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	36	lcl\|Aclame:protein:vir:10451\|NCBI_annot:tail	HHsearch (proba=100.00%)
Hc3	37	lcl\|Aclame:protein:vir:10452\|NCBI_annot:tail	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:10450 protein:vir:2201 protein:vir:94576	phiA1122 T7 Berlin	100 % 94 % 78 %
Portal	protein:vir:10447 protein:vir:2198 protein:vir:3361	phiA1122 T7 T3	100 % 100 % 85 %
TermL	protein:vir:10462 protein:vir:2213 protein:vir:3376	phiA1122 T7 T3	100 % 99 % 86 %
Ad3	protein:vir:10451 protein:vir:2202 protein:vir:3365	phiA1122 T7 T3	100 % 98 % 81 %
Hc3	protein:vir:10452 protein:vir:2203 protein:vir:1543	phiA1122 T7 phiYeO3-12	100 % 96 % 69 %