BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_016764.1_cdsid_YP_005098202.1 [gene=BF7_00230] [protein=TerL large terminase subunit-like protein] [protein_id=YP_005098202.1] [location=37677..39476] (599 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 414 e-117 gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 410 e-116 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 388 e-109 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 373 e-105 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 369 e-104 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 365 e-103 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 297 2e-82 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 296 5e-82 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 285 1e-78 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 280 3e-77 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 273 4e-75 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 273 4e-75 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 271 1e-74 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 271 2e-74 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 267 3e-73 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 264 3e-72 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 241 1e-65 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 49 2e-07 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 47 5e-07 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 39 2e-04 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 39 3e-04 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 36 0.002 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 35 0.003 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 33 0.008 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 33 0.012 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 32 0.024 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 32 0.025 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 31 0.052 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 29 0.13 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 29 0.13 gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 28 0.26 gi|15217|lcl|protein:vir:2600 Length: 353 # NCBI annotation: gp4... 26 1.0 gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp6... 25 2.2 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 25 2.4 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 25 2.4 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 24 4.1 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 24 6.1 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 23 7.5 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 23 7.7 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 23 7.8 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 23 8.8 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 23 9.3 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 414 bits (1064), Expect = e-117, Method: Compositional matrix adjust. Identities = 237/605 (39%), Positives = 335/605 (55%), Gaps = 38/605 (6%) Query: 7 RHAQLALLQQTFQSFLPFLIIGMKFLGFGTTAI-------------QKDIGLYLEHGPKD 53 R L LQQTF P+ + G+ L F I Q DI +L G K Sbjct: 14 RWEALHELQQTF----PYTVAGL--LSFAQVVINNLITGNPDLNRVQADILKFLFGGNKY 67 Query: 54 LMVQAQRSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILAC 113 MV+AQR QAK+TI A++AV+ +I +P R++I+S +A EI+ ++++ +D L Sbjct: 68 RMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAKRAEEIAGWVIKIFRGLDFLEF 127 Query: 114 LRPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSR 173 + PD AGD+ S++ F++H +L+G DKSPSVAC I +QG RAD+++ADDVES +NSR Sbjct: 128 MLPDIYAGDKASIKGFEIHYTLRGSDKSPSVACYSIEAGMQGARADIILADDVESLQNSR 187 Query: 174 TATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRI 233 TA R LL ++F S I + G +I+LGTPQ+ S+YN LPA G+ +RI Sbjct: 188 TAAGRALLEDLTKEFES-----------INQFGDIIYLGTPQSVNSIYNNLPARGYQIRI 236 Query: 234 WPGRYPTVEEEPAYGEHLAPYIKQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKE 293 WPGRYPT+E+E YG+ LAP I+Q M DPSLR G G G G P PE+ + L+ KE Sbjct: 237 WPGRYPTLEQEACYGDFLAPMIRQDMIDDPSLRSGYGIDGTQGAPTCPEMYDDEKLIEKE 296 Query: 294 NKQGPAYFQLQHMLCTLLSDMERYPLKAQHIVVMNLGA----QLPMHFVRGISAEHLRQY 349 QG A FQLQ ML T L D +RYPL+ +++M+ G ++P ++ Sbjct: 297 ISQGTAKFQLQFMLNTRLMDADRYPLRLNQLILMSFGTDVVPEMPTWSNDSVNLISDAPR 356 Query: 350 QVGSLKFHCSTPMDIGKEFAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEG 409 + P+ E+ R++ IDPAGGGKNGDETGVA+V L I+V V G Sbjct: 357 FGNKPTDYLYRPVPRPYEWRPIQRRLMYIDPAGGGKNGDETGVAIVFLLGTFIYVYKVFG 416 Query: 410 IPGGYDADTLKKLVAYCKRWEPHLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTG 469 +PGGY L ++V K+ E + IEKN GHGAF V+ P E ++E Y TG Sbjct: 417 VPGGYSESALSRIVREAKQAEVKEVFIEKNFGHGAFEAVIKPYFEREW-PAELKEDYATG 475 Query: 470 QKEQRIADTLEPIAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGAL 529 QKE RI +TLEP+ + ++F+ +I D S P + R ++L Q +T ++G L Sbjct: 476 QKEARIIETLEPLMSAHRIIFNAEMIKQDIDSVQHYPLEVRMSYSLFAQMSNITLEKGCL 535 Query: 530 VKDDRLDVLSIAVAHFINALAQDSALVAQSVRDQELVKF---MQDPLSHNRYTNAAQMGY 586 DDRLD L A+ + + D A +R +E+ ++ M DPL + GY Sbjct: 536 RHDDRLDALYGAIRQLTSQIDYDEANRINRLRAKEMREYLEMMTDPLRRREFFTGQDHGY 595 Query: 587 RQFAN 591 R+ N Sbjct: 596 RKSTN 600 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 410 bits (1054), Expect = e-116, Method: Compositional matrix adjust. Identities = 231/572 (40%), Positives = 327/572 (57%), Gaps = 27/572 (4%) Query: 39 IQKDIGLYLEHGPKDLMVQAQRSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEIS 98 IQ DI ++ G K MV+AQR QAK+TI A++AV+ +I P R+LI S +A EI+ Sbjct: 53 IQADILRFMFTGKKYRMVEAQRGQAKTTIAAIYAVFCIIHRPHFRILISSQTSKRAEEIA 112 Query: 99 TLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQGKRA 158 ++++ +DIL + PD +GD+ S+ F++H +L+G SPSVAC I G++QG RA Sbjct: 113 GWVIKIFRGLDILEFMMPDIYSGDKASIRGFEIHYTLRGSGASPSVACYSIEGSMQGARA 172 Query: 159 DLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVIFLGTPQTDA 218 DL+IADDVES +NS TA R L + ++F SI + G +++LGTPQ+ Sbjct: 173 DLIIADDVESLQNSATAAGRVKLEEATKEFESI-----------NQTGDILYLGTPQSIN 221 Query: 219 SVYNTLPAAGFGLRIWPGRYPTVEEEPAYGEHLAPYIKQRMTRDPSLREGGGPTGRSGQP 278 S+YN LP+ G+ LRIWPGRYPTVE++ +YG+ LAP I + M +P LR GGG T GQP Sbjct: 222 SIYNNLPSRGYQLRIWPGRYPTVEQQVSYGDFLAPLIIEDMEANPELRRGGGITRLQGQP 281 Query: 279 VDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDMERYPLKAQHIVVMNLGA----QLP 334 PE+ + AL+ KE QG A FQLQ ML T LSD ER+PLK I+ N G ++P Sbjct: 282 TCPEMYNDEALIEKEISQGTAKFQLQFMLNTRLSDSERFPLKLSSIMFGNFGVDKVPEMP 341 Query: 335 MHFVRGIS--AEHLRQYQVGSLKFHCSTPMDIGKEFAAPASRVLAIDPAGGGKNGDETGV 392 +H I+ E R + +F+ P E+ R++ IDPAGGG+NGDETGV Sbjct: 342 LHSTDSINEIKEAQRPGNKSTDRFYRMAPRPY--EWKPATRRIMYIDPAGGGQNGDETGV 399 Query: 393 AVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWEPHLILIEKNMGHGAFTQVLLPL 452 A+V L I+V G+ GGY+ L+++V K + +EKN GHGAF ++ P Sbjct: 400 AIVFLLGTYIYVYKCFGVKGGYEDADLEQIVMAAKEANCKEVFVEKNFGHGAFQAIIKPF 459 Query: 453 LRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALVFDESVITDDWASTLGKPADKRQL 512 C +QE Y TGQKE+RI DTLEP+ + LVF+ +I +D + +K+ Sbjct: 460 FERLH-PCELQEDYATGQKEERIIDTLEPLLSAHRLVFNTEIIFEDNKAIQKYALEKQAS 518 Query: 513 FTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINALAQDSALVAQSVRDQ-----ELVK 567 ++L HQ +TRD+G+L DDR+D L AV + D +A+ R+Q + + Sbjct: 519 YSLFHQIANITRDKGSLRHDDRIDALYGAVRQLTTDIDYDE--MAKQSREQMEQARDYIA 576 Query: 568 FMQDPLSHNRYTNAAQMGYRQFANPTARKTRR 599 M DP + A G + N T R Sbjct: 577 MMNDPSQRRAFLYGATSGPSRARNVTTAGANR 608 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 388 bits (996), Expect = e-109, Method: Compositional matrix adjust. Identities = 219/588 (37%), Positives = 325/588 (55%), Gaps = 49/588 (8%) Query: 7 RHAQLALLQQTFQSFLPFLIIGMKFLGFGTTAI-------------QKDIGLYLEHGPKD 53 R L LQQTF P+ G+ L F T I Q DI +L +G K Sbjct: 14 RWEMLQELQQTF----PYTAEGL--LLFADTVIHNLIAGNPHLIRMQADILKFLFYGHKY 67 Query: 54 LMVQAQRSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILAC 113 +++A R AK+T++A++ V+ +I +P R++++S +A EI+ +V++ +D L Sbjct: 68 RLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGLDFLEF 127 Query: 114 LRPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSR 173 + PD AGDR SV+ F++H +L+G DKSPSV+C I +QG RAD+++ADDVES +N+R Sbjct: 128 MLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDVESMQNAR 187 Query: 174 TATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRI 233 TA R LL + ++F S I + G +I+LGTPQ S+YN LPA G+ +RI Sbjct: 188 TAAGRALLEELTKEFES-----------INQFGDIIYLGTPQNVNSIYNNLPARGYSVRI 236 Query: 234 WPGRYPTVEEEPAYGEHLAPYIKQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKE 293 W RYP+VE+E YG+ LAP I Q M +P+LR G G G SG P PE+ + L+ KE Sbjct: 237 WTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDEVLIEKE 296 Query: 294 NKQGPAYFQLQHMLCTLLSDMERYPLKAQHIVVMNLGAQ----LPMHFVRGISAEHLRQY 349 QG A FQLQ ML T + D +RYPL+ +++ + G + +P I+ Sbjct: 297 ISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINI------ 350 Query: 350 QVGSLKFHCSTPMDI-------GKEFAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNI 402 +G + + P D E+ A + +++ IDPAGGGKNGDETGVA+V I Sbjct: 351 -IGDAPKYGNKPTDFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLHGTFI 409 Query: 403 FVRSVEGIPGGYDADTLKKLVAYCKRWEPHLILIEKNMGHGAFTQVLLPLLRAEGVTCAV 462 +V G+PGGY +L ++V K+ + IEKN GHGAF V+ P E + Sbjct: 410 YVYQCFGVPGGYRESSLNRIVQAAKQAGVKEVFIEKNFGHGAFEAVIKPYFEREW-PVTL 468 Query: 463 QEVYNTGQKEQRIADTLEPIAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKL 522 +E Y TGQKE RI +TLEP+ A L+F+ ++ D+ S P + R ++L +Q + Sbjct: 469 EEDYATGQKELRIIETLEPLMAAHRLIFNAEMVKSDFESVQHYPLELRMSYSLFNQMSNI 528 Query: 523 TRDRGALVKDDRLDVLSIAVAHFINALAQDSALVAQSVRDQELVKFMQ 570 T ++ +L DDRLD L A+ + + D +R QE+ ++ Sbjct: 529 TIEKNSLRHDDRLDALYGAIRQLTSQIDYDEVTRINRLRAQEMRDYIH 576 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 373 bits (957), Expect = e-105, Method: Compositional matrix adjust. Identities = 227/581 (39%), Positives = 317/581 (54%), Gaps = 28/581 (4%) Query: 7 RHAQLALLQQTFQSFLPFLIIGMKFLGFGTTAIQKDIGLYLEHGPKDLMVQAQRSQAKST 66 R + L+++ + F+ F M++LG+ T +Q+DI ++++GP+ MV AQR +AKST Sbjct: 6 RFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRGEAKST 65 Query: 67 ITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSV 126 I LF +W L+QDP RV+++S +A E L+ LI + +L L PD+ AGDR SV Sbjct: 66 IACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRTSV 125 Query: 127 EKFDVHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIR 186 +FDVH SLKGVDKS SV C+GI +LQG R DLLI DD+E+ KN TAT R L+ + Sbjct: 126 LEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLSK 185 Query: 187 DFPSIAVDRVGAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPTVEEEPA 246 +F SI D R GR+++LGTPQT S+YNTLP GF +R+WPGR+P E P Sbjct: 186 EFTSIVAD---------RNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPK 236 Query: 247 YGEHLAPYIKQRMT-RDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQH 305 YG+ LAP I +RM + G G G G DPE E L KE QGP F+LQ Sbjct: 237 YGDALAPSILERMALLGDRCQTGRGLDGTRGWSTDPERYSEEELCDKELDQGPETFELQF 296 Query: 306 MLCTLLSDMERYPLKAQHIVVMNLG-AQLPMHFVRG----ISAEHLRQYQVGSLKFHCST 360 ML T LSD R LK + ++V + Q+P + +++ V S++ Sbjct: 297 MLNTSLSDAARQQLKLRDLIVADFSHEQVPESVFWAADPRFKIDLPQEFPVQSVEMF--R 354 Query: 361 PMDIGKEFAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLK 420 P + + FA S L +DPAG G GDE A+ + I V + G GG D L Sbjct: 355 PASVHEHFAQIKSMTLFLDPAGNG--GDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLD 412 Query: 421 KLVAYCKRWEPHLILIEKNMGHGAFTQVLL-------PLLRAEGVTCAVQEVYNTGQKEQ 473 KLV CK + ++L+EKNMG G TQ++ P + V E + TGQKE Sbjct: 413 KLVQLCKDFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRLAGVGVDERHKTGQKEL 472 Query: 474 RIADTLEPIAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDD 533 RI +T+ P+ + LV S + D P R + + ++Q +T DRG+L KDD Sbjct: 473 RIINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDD 532 Query: 534 RLDVLSIAVAHFINALAQDSALVAQSVRDQELVK-FMQDPL 573 RLD L VA + L D + Q RD +V+ F+++P+ Sbjct: 533 RLDALEGLVAELMGFLVIDE-VKEQQRRDAAVVQEFLRNPM 572 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 369 bits (947), Expect = e-104, Method: Compositional matrix adjust. Identities = 215/580 (37%), Positives = 320/580 (55%), Gaps = 37/580 (6%) Query: 18 FQSFLPFLIIGMKFLGFGTTAIQKDIGLYLEHGPKDLMVQAQRSQAKSTITALFAVWTLI 77 + F F + M FLGF T +Q DI +++ P MV AQR +AKSTI ++ VW ++ Sbjct: 17 YPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKSTIACIYVVWCIV 76 Query: 78 QDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLKG 137 +DPR+R +++S G +A E LI +LIM D+LA LRP+ + GDR S FDV+ +LKG Sbjct: 77 RDPRTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNWALKG 136 Query: 138 VDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVG 197 V+KS S+ CIGI LQG RAD+LI DD+E+ KN TAT R L +Q ++F SI Sbjct: 137 VEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT---- 192 Query: 198 AGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPTVEEEPAYGEHLAPYIKQ 257 G++++LGTPQ+ S+YN LPA GF +RIWPGR+PT++E+ YG+ LAP I + Sbjct: 193 -------HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQERYGDWLAPSILE 245 Query: 258 RMTR------DPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLL 311 R+ R +P R G G G G DP+ E L+ KE QG FQLQ+ML T L Sbjct: 246 RIARLEERGHNP--RTGKGLDGTRGWAADPQRYNEEDLIDKELDQGAEGFQLQYMLDTSL 303 Query: 312 SDMERYPLKAQHIVVMNLGAQLPMHFVRGISAEHLR----QYQVGSLKFHCSTPMDIGKE 367 +D +R LK + ++ ++ + V + E + ++ +K P + Sbjct: 304 ADEQRMQLKLRDLLFIDATHESVPEQVAWAADERFKLKFDAHRFPIIKPELYLPALMAGG 363 Query: 368 FAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCK 427 +A + +DPAG G GDE AV L I V S+ G GG+ + L+K +A Sbjct: 364 WAPLQQMTMFVDPAGDG--GDELSYAVGGTLGPYIHVVSIGGWKGGFAEENLEKCIALAA 421 Query: 428 RWEPHLILIEKNMGHGAFTQVLLPLLRA----------EGVTCAVQEVYNTGQKEQRIAD 477 R+ +I +EKN+G GA Q+ +R+ EG+ +++ +GQKE+RI D Sbjct: 422 RYGVKVIYVEKNLGAGAVGQLFRNYMRSINPDTGKPRYEGI--GIEDRQKSGQKERRIID 479 Query: 478 TLEPIAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDV 537 TL PI R L+F S + D+ + PADKR ++ HQ +T DRG+L KDDR+D Sbjct: 480 TLRPIMQRHRLIFHVSAMDSDYVACQQYPADKRTERSVFHQIHNITTDRGSLPKDDRIDA 539 Query: 538 LSIAVAHFINALAQDSALVAQSVRDQELVKFMQDPLSHNR 577 L V +L +D ++ + +++ +P+ + + Sbjct: 540 LEGLVRELTPSLVKDDEAATRAREEAAKKEWLNNPMGYTK 579 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 365 bits (937), Expect = e-103, Method: Compositional matrix adjust. Identities = 218/584 (37%), Positives = 317/584 (54%), Gaps = 37/584 (6%) Query: 14 LQQTFQSFLPFLIIGMKFLGFGTTAIQKDIGLYLEHGPKDLMVQAQRSQAKSTITALFAV 73 ++ + F F + M FLGF T +Q DI +++ P MV AQR +AKSTI ++ V Sbjct: 13 VRDMYPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKSTIACIYVV 72 Query: 74 WTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHN 133 W + Q+P +R +++S G +A E LI +LIM D+LA LRP+ + GDR S FDV+ Sbjct: 73 WCITQNPATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTSATSFDVNW 132 Query: 134 SLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAV 193 +LKGV+KS S+ CIGI LQG RAD+LI DD+E+ KN TAT R L +Q ++F SI Sbjct: 133 ALKGVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQSQEFTSICT 192 Query: 194 DRVGAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPTVEEEPAYGEHLAP 253 G++++LGTPQ+ S+YN LPA GF +RIWPGR+PT++E+ YG+ LAP Sbjct: 193 -----------HGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQARYGDWLAP 241 Query: 254 YIKQRMTR------DPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHML 307 I R+ R +P R G G G G DP+ E LL KE QGP FQLQ+ML Sbjct: 242 SILARIARLEEKGHNP--RTGKGLDGTRGWAADPQRYNEEDLLDKELDQGPEGFQLQYML 299 Query: 308 CTLLSDMERYPLKAQHIVVMNLGAQLPMHFVRGISAEHLR----QYQVGSLKFHCSTPMD 363 T L+D +R LK + ++ ++ + V + E + ++ +K P Sbjct: 300 DTSLADEQRMQLKLRDLLFIDATHESVPEQVAWAADERFKLKFDAHRFPVIKPELYLPAL 359 Query: 364 IGKEFAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLV 423 + +A + +DPAG G GDE A+ L I V S+ G GG+ + L+K + Sbjct: 360 MAGGWAPLQQMTMFVDPAGDG--GDELSYALGGTLGPYIHVVSIGGWKGGFAEENLEKCI 417 Query: 424 AYCKRWEPHLILIEKNMGHGAFTQVL----------LPLLRAEGVTCAVQEVYNTGQKEQ 473 A R+ +I +EKN+G GA Q+ LR EG+ V++ +GQKE+ Sbjct: 418 ALAARYGVKVIYVEKNLGAGAVGQLFRNHMRSIDPDTGKLRYEGI--GVEDRQKSGQKER 475 Query: 474 RIADTLEPIAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDD 533 RI DTL PI R L+F S + D S PADKR ++ HQ +T DRG+L KDD Sbjct: 476 RIIDTLRPIMQRHRLIFHVSAMDSDHVSCQQYPADKRNERSVFHQIHNITTDRGSLPKDD 535 Query: 534 RLDVLSIAVAHFINALAQDSALVAQSVRDQELVKFMQDPLSHNR 577 R+D L V L +D ++ + +++ +P+ + + Sbjct: 536 RIDALEGLVRELAPTLVKDDEAATRAREEAAKKEWLNNPMGYTK 579 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 297 bits (761), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 197/558 (35%), Positives = 295/558 (52%), Gaps = 31/558 (5%) Query: 21 FLPFLIIGMKFLGFGT-TAIQKDIGLYLEHGP-KDLMVQAQRSQAKSTITALFAVWTLIQ 78 F+ FL + K L T Q D+ L G + ++QA R KS IT F VW L Sbjct: 9 FVFFLFVLWKALSLPVPTRCQIDMAKKLSAGDNRRFILQAFRGIGKSFITCAFVVWKLWN 68 Query: 79 DPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLKGV 138 +P + +I+SA +A+ S I R+I M L L+P Q G R +V FDV + Sbjct: 69 NPDLKFMIVSASKERADANSIFIKRIIDLMPQLKELKPKQ--GQRDAVISFDVGPAKP-- 124 Query: 139 DKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGA 198 D SPSV +GI G L G RAD+LIADDVE NS T R+ L + +++F +I Sbjct: 125 DHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLSELVKEFDAI------- 177 Query: 199 GGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPTVEEE-PAYGEHLAPYIKQ 257 ++ G +I+LGTPQ + ++Y L G+ IWP RYP ++ +YG+ LAP ++ Sbjct: 178 ---LKPGGTIIYLGTPQNEMTLYRELEGRGYTTTIWPARYPRDRKDWQSYGDRLAPMLQA 234 Query: 258 RMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDMERY 317 + DP +P D + L +E G A F LQ ML LSD E+Y Sbjct: 235 ELEEDPE--------SFYWRPTDEVRFDDTDLKERELSYGKAGFALQFMLNPNLSDAEKY 286 Query: 318 PLKAQHIVVMNLG-AQLPMHFVRGISAEHLRQY--QVGSLKFHCSTPMDIGKEFAAPASR 374 PLK + ++V +L A PM + + ++ R+ VG + T +G F++ + Sbjct: 287 PLKLRDLIVADLDPASSPMVYQWLPNPQNKREDVPNVGLMGDSYHTYQTVGSAFSSYTQK 346 Query: 375 VLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWEPHLI 434 +L IDP+G GK DETG AV+ QL G IF V G+ GGY+ TL+ L ++W+ + Sbjct: 347 ILVIDPSGRGK--DETGYAVLYQLNGYIFAMEVGGMRGGYEDSTLEALAKIGRKWKVNEY 404 Query: 435 LIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALVFDESV 494 +IE N G G + ++ P+ A AV EV + GQKE RI D LEPI L+ + + Sbjct: 405 VIEGNFGDGMYLELFKPVA-ARIHPAAVTEVKSKGQKELRICDVLEPIMGSHRLIVNAAA 463 Query: 495 ITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINALAQDSA 554 I D+ S K + +++L +Q +++R+RGAL DDRLD L+I V F+ ++A+D+ Sbjct: 464 IVQDYQSASDKDGVRNPIYSLFYQMTRISRERGALAHDDRLDALAIGVQFFVESMAKDAN 523 Query: 555 LVAQSVRDQELVKFMQDP 572 + V ++ L + M++P Sbjct: 524 KGEREVTEEWLEEQMENP 541 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 296 bits (758), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 199/542 (36%), Positives = 282/542 (52%), Gaps = 33/542 (6%) Query: 19 QSFLPFLIIGMKFLGFGT-TAIQKDIGLYLEHG-PKDLMVQAQRSQAKSTITALFAVWTL 76 F+ FL++ + L T QKD+ L G + ++QA R KS IT F VW L Sbjct: 17 NDFVLFLMVLWRALNLPEPTRCQKDMARKLAAGDERRFILQAFRGIGKSFITCAFVVWKL 76 Query: 77 IQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLK 136 +P+ + +I+SA +A+ S I R+I + L L+P + D SV FDV L Sbjct: 77 WNNPQLKFMIVSASKERADANSIFIKRIIDLLPFLHELKPRPEQRD--SVISFDV--GLA 132 Query: 137 GVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRV 196 D SPSV +GI G L G RAD+LIADDVE NS T R+ L + +++F +I Sbjct: 133 KPDHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQAARDRLGELVKEFDAI----- 187 Query: 197 GAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPT-VEEEPAYGEHLAPYI 255 ++ G +I+LGTPQ + ++Y L G+ IWP RYP + + YG LAP + Sbjct: 188 -----LKPNGTIIYLGTPQCEMTLYRELENRGYKTTIWPARYPKDMNDLETYGNRLAPML 242 Query: 256 KQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDME 315 K + +P QP DP + L +E G A F LQ ML LSD E Sbjct: 243 KDELMENPE--------AYWWQPTDPVRFDDEDLRERELSYGKAGFALQFMLNPNLSDAE 294 Query: 316 RYPLKAQHIVVMNLGA-QLPMHFVRGISAEHLRQY--QVGSLKFHCSTPMDIG-KEFAAP 371 +YPLK + +V L + P+ + + ++L Q QVG LK D+ K A+ Sbjct: 295 KYPLKLRDFIVAALEVDKAPLTYGWLPNPQNLLQNVPQVG-LKGDTYHRYDVADKRQASY 353 Query: 372 ASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWEP 431 S+++AIDP+G GK DETG V+ L G I++ G GGY+ TL+ L KRW Sbjct: 354 TSKIMAIDPSGRGK--DETGYCVLYFLNGYIYLMETGGFRGGYEDSTLEALAKVAKRWNV 411 Query: 432 HLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALVFD 491 + +L E N G G F ++ P+L CA+ E +TGQKE RIADTLEP+ +V Sbjct: 412 NEVLCEGNFGDGMFLKIFSPVLNRVH-RCALTETKSTGQKEMRIADTLEPVMGAHRIVVM 470 Query: 492 ESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINALAQ 551 ES I D+ + +++ +Q +LTR+RGAL DDRLD +I VA+F+ L + Sbjct: 471 ESAIQKDYQTARNVDGTHDIKYSMFYQLTRLTRERGALAHDDRLDAFAIGVAYFVEMLEK 530 Query: 552 DS 553 DS Sbjct: 531 DS 532 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 285 bits (729), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 202/568 (35%), Positives = 290/568 (51%), Gaps = 37/568 (6%) Query: 19 QSFLPFLIIGMKFLGF-GTTAIQKDIGLYLEHG-PKDLMVQAQRSQAKSTITALFAVWTL 76 +SF+ FL + + L T Q D+ L G + ++QA R KS IT F VW L Sbjct: 16 RSFVAFLFVLWRALNLPKPTKCQIDMAKKLSAGDERRFILQAFRGIGKSFITCAFVVWKL 75 Query: 77 IQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLK 136 +P + +I+SA +A+ S I R+I + L L+P G R S FDV + Sbjct: 76 WNNPDLKFMIVSASKERADANSVFIKRIIDLLPFLHELKPG--PGQRDSSLAFDVGPAKP 133 Query: 137 GVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRV 196 D SPSV +GI G L G RAD+LIADDVE NS T T R+ L + +++F +I Sbjct: 134 --DHSPSVKSVGITGQLTGSRADILIADDVEVPNNSATQTARDHLGELVKEFDAI----- 186 Query: 197 GAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPTVEEE-PAYGEHLAPYI 255 ++ G +I+LGTPQT+ ++Y L G+ IWP RYP + + +YG LAP + Sbjct: 187 -----LKPGGTIIYLGTPQTEMTLYRELEGRGYVTTIWPARYPKDQADWDSYGPRLAPML 241 Query: 256 KQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDME 315 + D SL P D + L +E G F LQ ML LSDME Sbjct: 242 AAELQADGSLFWA---------PTDEVRFDDKDLRERELSYGKGGFALQFMLNPNLSDME 292 Query: 316 RYPLKAQHIVVMNLGA-QLPMHFV-RGISAEHLRQYQVGSLK---FHCSTPMDIGKEFAA 370 +YPLK + +V + P + +A + V LK FH +G+ A+ Sbjct: 293 KYPLKLRDFIVGTFAQDKGPTTLIWMPNAANECKGVPVVGLKGDRFHRYE--SVGQATAS 350 Query: 371 PASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWE 430 A ++L IDP+G GK DETG AV+ QL G IF+ G GGY+ L+ L K + Sbjct: 351 YAQKILVIDPSGRGK--DETGYAVLYQLNGYIFLMDAGGFRGGYEDTVLQALANIAKIHK 408 Query: 431 PHLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALVF 490 + I++E N G G + ++L P++ A CA+ EV + GQKE RI D LEP+ LV Sbjct: 409 VNEIVVEGNFGDGMYIKLLAPVVTAT-FPCAITEVKSKGQKELRICDVLEPVLGSHKLVI 467 Query: 491 DESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINALA 550 ES+I D+ + L ++L++Q ++TR+RG+L DDRLD L+I V F AL Sbjct: 468 QESLIEKDYRTALNADGTTDTSYSLLYQLTRITRERGSLAHDDRLDALAIGVQFFTEALE 527 Query: 551 QDSALVAQSVRDQELVKFMQDPL-SHNR 577 +DS + + + L M+D L H+R Sbjct: 528 RDSKVGESEMLQEFLESHMEDALMGHDR 555 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 280 bits (717), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 188/563 (33%), Positives = 290/563 (51%), Gaps = 31/563 (5%) Query: 37 TAIQKDIGLYLEHGPKDLMVQAQRSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANE 96 T Q I YL+HGPK L + A R KS ITA F +W L DP ++++ISA +A+ Sbjct: 31 TRAQLAIADYLQHGPKRLQISAFRGVGKSWITAAFVLWVLFVDPDRKIMVISASKERADN 90 Query: 97 ISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQGK 156 S +LI+ ++ L+ LRP + + R S FDV + ++PSV +GI G + G Sbjct: 91 FSIFCQKLILDIEWLSHLRP-RDSDQRWSRISFDVGPA--KPHQAPSVKSVGITGQMTGS 147 Query: 157 RADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVIFLGTPQT 216 RA L++ DDVE NS T RE LLQ + + SI V A R++FLGTPQ+ Sbjct: 148 RAHLMVFDDVEVPANSATDMQREKLLQLVSESESILVPDDDA--------RIMFLGTPQS 199 Query: 217 DASVYNTLPAAGFGLRIWPGRYPTVEEEPAYGEHLAPYIKQRMTRDPSLREGGGPTGRSG 276 ++Y L + +WP RYP + Y LAP + + +DP L + Sbjct: 200 TFTIYRKLAERSYRPFVWPARYP--RDLSKYEGLLAPQLVADLEKDPEL---------TW 248 Query: 277 QPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDMERYPLKAQHIVVMNLGAQLPMH 336 +P D E L+ +E+ G + F LQ ML T LSD E++PLK Q ++V LGA+ Sbjct: 249 KPTDTRF-NELNLMERESAMGRSNFMLQFMLDTSLSDAEKFPLKFQDLIVTPLGAECAEA 307 Query: 337 FVRGISAEHLRQ--YQVGSLKFHCSTPMDIGKEFAAPASRVLAIDPAGGGKNGDETGVAV 394 + ++R+ VG PM I + + ++++DP+G G DET V Sbjct: 308 YAWSADPRYMRKELNPVGLPGDRFYGPMYIDEGIVPYSETIVSVDPSGRGT--DETVAVV 365 Query: 395 VDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWEPHLILIEKNMGHGAFTQVLLPLLR 454 + Q G IFVR ++ GY +TL +V KR++ +L+E N G G T++ + Sbjct: 366 LSQANGYIFVRDMKAFRDGYSDETLSDIVRLGKRYKASKLLVESNFGDGMITELFKRHIS 425 Query: 455 AEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALVFDESVITDDWASTLGKPADKRQLFT 514 G +EV + +KE+RI +TLEP+ + L+ D V D++S +KR + Sbjct: 426 QMGGGMDTEEVRASARKEERIIETLEPVMNQHKLIIDPKVWEYDYSSNPDAAPEKRLEYM 485 Query: 515 LMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINALAQDSALVAQSVRDQELVKFMQDPLS 574 L +Q ++ R++GA+ DDR+D LS V ++++A+AQ SA Q++R E K M Sbjct: 486 LGYQMSRMCREKGAVKHDDRVDALSQGVQYYVDAVAQ-SAFKQQALRKHEEWKAMMTAFD 544 Query: 575 HNRY--TNAAQMGYRQFANPTAR 595 + T+A +G + F + T+R Sbjct: 545 QTPHLATDALVLG-QSFKSLTSR 566 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 273 bits (699), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 196/564 (34%), Positives = 282/564 (50%), Gaps = 38/564 (6%) Query: 21 FLPFLIIGMKFLGFGT-TAIQKDIGLYLEHGP-KDLMVQAQRSQAKSTITALFAVWTLIQ 78 F+ FL + K L T Q D+ L +G K ++QA R KS IT F VWTL + Sbjct: 19 FVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWTLWR 78 Query: 79 DPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLKGV 138 DP+ ++LI+SA +A+ S I +I + LA L+P + G R SV FDV + Sbjct: 79 DPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPA--KP 134 Query: 139 DKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGA 198 D SPSV +GI G L G RAD++IADDVE NS T RE L +++F ++ + Sbjct: 135 DHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPTS 194 Query: 199 GGVIERRGRVIFLGTPQTDASVYNTLP-AAGFGLRIWPGRYP-TVEEEPAYGEHLAPYIK 256 RVI+LGTPQT+ ++Y L G+ IWP YP + EE+ YGE LAP ++ Sbjct: 195 --------RVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYGERLAPMLR 246 Query: 257 QRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDMER 316 + G GQP DP L +E + G A F LQ ML LSD E+ Sbjct: 247 EEFN--------DGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEK 298 Query: 317 YPLKAQHIVVMNLG-AQLPMHFV----RGISAEHLRQYQVGSLKFHC--STPMDIGKEFA 369 YPL+ + +V L + PMH+ R E L + H S + G+ Sbjct: 299 YPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQY-- 356 Query: 370 APASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRW 429 R+L IDP+G GK DETG AV+ L G I++ G GY TL+ L K+W Sbjct: 357 --QQRILVIDPSGRGK--DETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQW 412 Query: 430 EPHLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALV 489 + ++ E N G G F +V P+L A++E+ G KE RI DTLEP+ + LV Sbjct: 413 KVQTVVFESNFGDGMFGKVFSPVLLKHH-AAALEEIRARGMKELRICDTLEPVLSTHRLV 471 Query: 490 FDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINAL 549 + VI +D+ + ++L +Q ++ R++GA+ DDRLD L++ V + + Sbjct: 472 IRDEVIREDYQTARDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTM 531 Query: 550 AQDSALVAQSVRDQELVKFMQDPL 573 D+ V V + L + M+ P+ Sbjct: 532 ELDAVKVEAEVLEAFLEEHMEHPI 555 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 273 bits (698), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 194/559 (34%), Positives = 277/559 (49%), Gaps = 30/559 (5%) Query: 21 FLPFLIIGMKFLGFGT-TAIQKDIGLYLEHGP-KDLMVQAQRSQAKSTITALFAVWTLIQ 78 F+ FL + K L T Q D+ L +G K ++QA R KS IT F VW+L + Sbjct: 19 FVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLWR 78 Query: 79 DPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLKGV 138 DP+ ++LI+SA +A+ S I +I + LA L+P + G R SV FDV + Sbjct: 79 DPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPA--KP 134 Query: 139 DKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGA 198 D SPSV +GI G L G RAD++IADDVE NS T RE L +++F ++ + Sbjct: 135 DHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLTSS 194 Query: 199 GGVIERRGRVIFLGTPQTDASVYNTLPAA-GFGLRIWPGRYP-TVEEEPAYGEHLAPYIK 256 RVI+LGTPQT+ ++Y L G+ IWP YP T EE Y + LAP ++ Sbjct: 195 --------RVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLR 246 Query: 257 QRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDMER 316 +P +G P DP L +E + G A F LQ ML LSD E+ Sbjct: 247 AEYDENPE--------ALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEK 298 Query: 317 YPLKAQHIVVMNLG-AQLPMHFVRGISAEHLRQY--QVGSLKFHCSTPMDIGKEFAAPAS 373 YPL+ + +V L + PMH+ + +++ + VG T D Sbjct: 299 YPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQ 358 Query: 374 RVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWEPHL 433 ++L IDP+G GK DETG AV+ L G I++ G GY TL+ L K+W Sbjct: 359 KILVIDPSGRGK--DETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQT 416 Query: 434 ILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALVFDES 493 ++ E N G G F +V P+L CA++E+ G KE RI DTLEP+ LV + Sbjct: 417 VVYESNFGDGMFGKVFSPILLKHH-NCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDE 475 Query: 494 VITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINALAQDS 553 VI D+ S ++L +Q ++TR++GAL DDRLD L++ + + ++ DS Sbjct: 476 VIRADYQSARDVDGKYDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESMQLDS 535 Query: 554 ALVAQSVRDQELVKFMQDP 572 V V L + M P Sbjct: 536 VKVEGEVLADFLEEHMMRP 554 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 271 bits (694), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 193/559 (34%), Positives = 277/559 (49%), Gaps = 30/559 (5%) Query: 21 FLPFLIIGMKFLGFGT-TAIQKDIGLYLEHGP-KDLMVQAQRSQAKSTITALFAVWTLIQ 78 F+ FL + K L T Q D+ L +G K ++QA R KS IT F VW+L + Sbjct: 19 FVAFLFVLWKALNLPVPTKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLWR 78 Query: 79 DPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFDVHNSLKGV 138 DP+ ++LI+SA +A+ S I +I + L+ L+P + G R SV FDV + Sbjct: 79 DPQLKILIVSASKERADANSIFIKNIIDLLPFLSELKP--RPGQRDSVISFDVGPA--NP 134 Query: 139 DKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGA 198 D SPSV +GI G L G RAD++IADDVE NS T RE L +++F ++ + Sbjct: 135 DHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLPSS 194 Query: 199 GGVIERRGRVIFLGTPQTDASVYNTLP-AAGFGLRIWPGRYP-TVEEEPAYGEHLAPYIK 256 RVI+LGTPQT+ ++Y L G+ IWP YP T EE Y + LAP ++ Sbjct: 195 --------RVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLR 246 Query: 257 QRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSDMER 316 +P +G P DP L +E + G A F LQ ML LSD E+ Sbjct: 247 AEYDENPE--------ALAGTPTDPVRFDRDDLRERELEYGKAGFTLQFMLNPNLSDAEK 298 Query: 317 YPLKAQHIVVMNLG-AQLPMHFVRGISAEHLRQY--QVGSLKFHCSTPMDIGKEFAAPAS 373 YPL+ + +V L + PMH+ + +++ + VG T D Sbjct: 299 YPLRLRDAIVAALDLEKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQ 358 Query: 374 RVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWEPHL 433 ++L IDP+G GK DETG AV+ L G I++ G GY TL+ L K+W Sbjct: 359 KILVIDPSGRGK--DETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQT 416 Query: 434 ILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGALVFDES 493 ++ E N G G F +V P+L CA++E+ G KE RI DTLEP+ LV + Sbjct: 417 VVYESNFGDGMFGKVFSPILLKHH-NCAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDE 475 Query: 494 VITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFINALAQDS 553 VI D+ S ++L +Q ++TR++GAL DDRLD L++ + + ++ DS Sbjct: 476 VIRADYQSARDVDGKHDVKYSLFYQMTRITREKGALAHDDRLDALALGIEYLRESMQLDS 535 Query: 554 ALVAQSVRDQELVKFMQDP 572 V V L + M P Sbjct: 536 VKVEGEVLADFLEEHMMRP 554 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 271 bits (692), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 196/572 (34%), Positives = 285/572 (49%), Gaps = 38/572 (6%) Query: 13 LLQQTFQSFLPFLIIGMKFLGFGT-TAIQKDIGLYLEHGP-KDLMVQAQRSQAKSTITAL 70 ++ Q F+ FL + K L T Q D+ L +G K ++QA R KS IT Sbjct: 12 IIAQLKGDFVAFLFVLWKALALPPPTKCQIDMARCLANGDNKKFILQAFRGIGKSFITCA 71 Query: 71 FAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFD 130 F VWTL +DP+ ++LI+SA +A+ S I +I + LA L+P + G R SV FD Sbjct: 72 FVVWTLWRDPQLKILIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFD 129 Query: 131 VHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPS 190 V + D SPSV +GI G L G RAD++IADDVE NS T RE L +++F + Sbjct: 130 VGPA--KPDHSPSVKSVGITGQLTGSRADIIIADDVEIPSNSATQGAREKLWTLVQEFAA 187 Query: 191 IAVDRVGAGGVIERRGRVIFLGTPQTDASVYNTLP-AAGFGLRIWPGRYP-TVEEEPAYG 248 + + RVI+LGTPQT+ ++Y L G+ IWP YP + EE+ YG Sbjct: 188 LLKPLPTS--------RVIYLGTPQTEMTLYKELEDNRGYTTIIWPALYPRSREEDLYYG 239 Query: 249 EHLAPYIKQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLC 308 + LAP +++ G GQP DP L +E + G A F LQ ML Sbjct: 240 DRLAPMLREEFN--------DGFEMLQGQPTDPVRFDMEDLRERELEYGKAGFTLQFMLN 291 Query: 309 TLLSDMERYPLKAQHIVVMNLG-AQLPMHFV----RGISAEHLRQYQVGSLKFHC--STP 361 LSD E+YPL+ + +V L + PMH+ R E L + H S Sbjct: 292 PNLSDAEKYPLRLRDAIVCGLDFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCS 351 Query: 362 MDIGKEFAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKK 421 + G+ R+L IDP+G GK DETG AV+ L G I++ G GY TL+ Sbjct: 352 QNTGQY----QQRILVIDPSGRGK--DETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLES 405 Query: 422 LVAYCKRWEPHLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEP 481 L K+W+ ++ E N G G F +V P+L A++E+ G KE RI DTLEP Sbjct: 406 LAKKAKQWKVQTVVFESNFGDGMFGKVFSPVLLKHH-AAAMEEIRARGMKELRICDTLEP 464 Query: 482 IAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIA 541 + + LV + VI +D+ + ++L +Q ++ R++GA+ DDRLD L++ Sbjct: 465 VLSTHRLVIRDEVIREDYQTARDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALG 524 Query: 542 VAHFINALAQDSALVAQSVRDQELVKFMQDPL 573 V + + D+ V V + L + M+ P+ Sbjct: 525 VEFLRSTMELDAVKVEAEVLEAFLEEHMEHPI 556 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 267 bits (682), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 188/556 (33%), Positives = 278/556 (50%), Gaps = 42/556 (7%) Query: 13 LLQQTFQSFLPFLIIGMKFLGF-GTTAIQKDIGLYLEHGP-KDLMVQAQRSQAKSTITAL 70 ++ Q F+ FL + K L T Q D+ L G K ++QA R KS IT Sbjct: 11 IVAQLKGDFVAFLFVLWKALNLPKPTKCQIDMARTLADGDHKKFILQAFRGIGKSFITCA 70 Query: 71 FAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFD 130 F VW L +DP+ +VLI+SA +A+ S I +I + LA L+P + G R SV FD Sbjct: 71 FVVWVLWRDPQLKVLIVSASKERADANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFD 128 Query: 131 VHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPS 190 V L D SPSV +GI G L G RAD++IADDVE NS T++ RE L + +F + Sbjct: 129 V--GLAKPDHSPSVKSVGITGQLTGSRADIIIADDVEVPGNSSTSSAREKLWTLVTEFAA 186 Query: 191 IAVDRVGAGGVIERRGRVIFLGTPQTDASVYNTLP-AAGFGLRIWPGRYPTVEEEP-AYG 248 + + RVI+LGTPQT+ ++Y L G+ IWP +YP + E YG Sbjct: 187 LLKPLPTS--------RVIYLGTPQTEMTLYKELEDNKGYSTVIWPAQYPRNDAEALYYG 238 Query: 249 EHLAPYIKQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLC 308 + LAP +K L G QP DP L +E + G A + LQ ML Sbjct: 239 DRLAPMLKAEYDEGFELLRG--------QPTDPVRFDTDDLRERELEYGKAGYTLQFMLN 290 Query: 309 TLLSDMERYPLKAQHIVVMNLGAQLPMHFVRGISAEHLRQYQVGSL--------KFH-CS 359 LSD E+YPL+ + +V + + + + R ++ ++ FH CS Sbjct: 291 PNLSDAEKYPLRLRDAIVCAVDPERAPLSYQWLPNRQNRNEELPNVGLKGDDIHSFHTCS 350 Query: 360 TPMDIGKEFAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTL 419 + A S++L IDP+G GK DETG AV+ L G I++ V G GGYD TL Sbjct: 351 S------RTAEYQSKILVIDPSGRGK--DETGYAVLYSLNGYIYLMEVGGFRGGYDDATL 402 Query: 420 KKLVAYCKRWEPHLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTL 479 +KL K+W+ ++ E N G G F ++ P+L A++E+ G KE RI DT+ Sbjct: 403 EKLAKKAKQWKVQTVVHESNFGDGMFGKIFSPVLLKHH-KAALEEIRAKGMKEMRICDTI 461 Query: 480 EPIAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLS 539 EP+ L+ + VI +D+ ++ ++ +Q ++TR+RGA+ DDRLD ++ Sbjct: 462 EPLMGSHKLIIRDEVIREDYQTSRDLDGKHDVRYSAFYQMTRMTRERGAVAHDDRLDAIA 521 Query: 540 IAVAHFINALAQDSAL 555 + + + DS + Sbjct: 522 LGIEWLREGMLVDSKI 537 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 264 bits (674), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 149/397 (37%), Positives = 224/397 (56%), Gaps = 42/397 (10%) Query: 7 RHAQLALLQQTFQSFLPFLIIGMKFLGFGTTAI-------------QKDIGLYLEHGPKD 53 R L LQQTF P+ G+ L F T I Q DI +L +G K Sbjct: 14 RWEMLQELQQTF----PYTAEGL--LLFADTVIHNLIAGNPHLIRMQADILKFLFYGHKY 67 Query: 54 LMVQAQRSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILAC 113 +++A R AK+T++A++ V+ +I +P R++++S +A EI+ +V++ +D L Sbjct: 68 RLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGLDFLEF 127 Query: 114 LRPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSR 173 + PD AGDR SV+ F++H +L+G DKSPSV+C I +QG RAD+++ADDVES +N+R Sbjct: 128 MLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDVESMQNAR 187 Query: 174 TATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRI 233 TA R LL + ++F S I + G +I+LGTPQ S+YN LPA G+ +RI Sbjct: 188 TAAGRALLEELTKEFES-----------INQFGDIIYLGTPQNVNSIYNNLPARGYSVRI 236 Query: 234 WPGRYPTVEEEPAYGEHLAPYIKQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKE 293 W RYP+VE+E YG+ LAP I Q M +P+LR G G G SG P PE+ + L+ KE Sbjct: 237 WTARYPSVEQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEMYDDDVLIEKE 296 Query: 294 NKQGPAYFQLQHMLCTLLSDMERYPLKAQHIVVMNLGA-QLPMHFVRGISAEHLRQYQVG 352 QG A FQLQ ML T + D +RYPL+ +++ + G ++P+ + ++ +G Sbjct: 297 ISQGAAKFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINI----IG 352 Query: 353 SLKFHCSTPMDI-------GKEFAAPASRVLAIDPAG 382 + + P D E+ A +++ IDPAG Sbjct: 353 DAPKYGNKPTDFMYRPVARPYEWGAVTRKIMYIDPAG 389 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 241 bits (616), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 181/572 (31%), Positives = 277/572 (48%), Gaps = 37/572 (6%) Query: 11 LALLQQTFQSFLPFLIIGMKFLGFGTTAIQKDIGLYLEHGPKDLMVQAQRSQAKSTITAL 70 L LQ F+ FL L + T Q I YL+ GPK L +QA R KS IT Sbjct: 5 LKALQGDFKLFLQALWDQLDLPS--PTRAQYAIADYLQSGPKRLQIQAFRGVGKSWITGA 62 Query: 71 FAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQAGDRVSVEKFD 130 F +WTL D +++IISA +A+ +S + +LI+ L LRP R S FD Sbjct: 63 FVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDA-RWSRISFD 121 Query: 131 VHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPS 190 V L ++PSV +GI G L G RADL+I DD+E NS T RE LLQ + S Sbjct: 122 V---LCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEAES 178 Query: 191 IAVDRVGAGGVIERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPTVEEEPAYGEH 250 I + + R+++LGTPQT +VY L + +WP RYP + Sbjct: 179 ILTPKDDS--------RIMYLGTPQTTFTVYRKLAERAYRPFVWPARYP---------KD 221 Query: 251 LAPYIKQRMTRDPSLREGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTL 310 + PY P L+E SG DP+ + L +E+ G + F LQ ML T Sbjct: 222 ITPY---EGLIAPQLQEDIDNGAESGTVTDPDRFDDDDLQQRESAMGRSNFMLQFMLDTT 278 Query: 311 LSDMERYPLKAQHIVVMNLG-AQLPMHFVRGISAEHLRQY--QVGSLKFHCSTPMDIGKE 367 LSD E++PLK +V+ ++ + P + + +++ + VG + +PM + E Sbjct: 279 LSDAEKFPLKMADLVITSVNPTEAPDNVIWCSDPQNIIKDAPTVGLPGDYFYSPMQLQGE 338 Query: 368 FAAPASRVLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYCK 427 + + ++DP+G G DET + Q G +++ + GY TL ++ CK Sbjct: 339 WTPYQETICSVDPSGRGT--DETAACYLSQKNGFLYLHEMRAYRDGYSDATLLDILKGCK 396 Query: 428 RWEPHLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQRIADTLEPIAARGA 487 ++ +++E N G G +++ L+ V EV +KE RI D+LEP+ + Sbjct: 397 KYNATTLVVETNFGDGIVSELFKKHLQQTKQAIFVDEVRANVRKEDRIIDSLEPVLNQHR 456 Query: 488 LVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDDRLDVLSIAVAHFIN 547 L+ D VI D++S P + R L+ L +Q ++ R + A+ DDRLD L+ V +F + Sbjct: 457 LIVDRGVIDWDYSSNKDCPPESRLLYMLFYQMSRMCRMKFAVKHDDRLDCLAQGVKYFTD 516 Query: 548 ALAQDSALVAQSVRDQE-----LVKFMQDPLS 574 +L+ SA ++R +E L F+ DP S Sbjct: 517 SLSI-SAQEQINLRKREEWEDILQGFLDDPQS 547 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 48.9 bits (115), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 26/188 (13%) Query: 55 MVQAQRSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACL 114 ++ R+ KS + A + W + + P +L ISA T A E V+ I++ + Sbjct: 73 LIMLPRAHLKSHMVATWCAWIITRHPEVTILYISATATLA-ETQLYAVKNILASSVYNRY 131 Query: 115 RPDQ---QAGDRVSVEKFD--------VHNSLKGVDKSPSVACIGIGGNLQGKRADLLIA 163 P+ Q G R EK+ V +G+ + ++A G+ N G AD+++A Sbjct: 132 FPEYIHPQEGKR---EKWSSNAMSIDHVQRKKEGI-RDATIATAGLTTNTTGWHADIIVA 187 Query: 164 DDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVIFLGTPQTDASVYNT 223 DD+ +N+ T RE + ++ F SI AGG + GT + +Y T Sbjct: 188 DDLVVPENAYTEDGRESVQKKSSQFTSIR----NAGGF------TMACGTRYHPSDIYAT 237 Query: 224 LPAAGFGL 231 + + + Sbjct: 238 WRSQKYDI 245 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 47.4 bits (111), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 71/187 (37%), Gaps = 47/187 (25%) Query: 48 EHGPKD---LMVQAQRSQAKSTI-TALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVR 103 +H KD +V A R KST+ + L+ +W + ++P RVL+ GT +S +R Sbjct: 50 QHEDKDNRRRLVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLV----GTNLKRLSRAFIR 105 Query: 104 LIMSM---------------DILACLRPDQQAGDR----VSVEKFDVHNSLKG------- 137 + I L P A DR D +L Sbjct: 106 ELRQYFEDTWLQQNVWNVRPHIEGALVPALSASDRRKRNSQRNNVDYDEALATLTDDTKL 165 Query: 138 -------------VDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQ 184 V K P+V + IG + G DLLI DD+ +NS+T E +L+ Sbjct: 166 IWSMEALQVIRPTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDKAENILEW 225 Query: 185 IRDFPSI 191 RD S+ Sbjct: 226 TRDLESV 232 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/128 (23%), Positives = 59/128 (46%), Gaps = 10/128 (7%) Query: 60 RSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLI-VRLIMSMDILACLRPD- 117 R KS A++ W + ++P + + A T++ I L ++ I++ D L PD Sbjct: 71 RDHQKSHCIAVWVCWQIFKNPAVTIAYVCA--TESLAILQLYDIKQILTSDEFTRLSPDM 128 Query: 118 ----QQAGDRVSVEKFDVHNSLKGVDK--SPSVACIGIGGNLQGKRADLLIADDVESHKN 171 ++ + + V + ++ ++ P+V G+ N G ++++ DDV KN Sbjct: 129 IEPMEKKRQKWAETAIIVDHPIRKKERPRDPTVLATGLDSNNIGAHCNIMVKDDVVIDKN 188 Query: 172 SRTATNRE 179 S T T R+ Sbjct: 189 SLTETARQ 196 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 23/127 (18%) Query: 53 DLMVQAQRSQAKSTITALFAVWTLIQ----DPRSRVLIISAGGTQANEISTLIVRLIMS- 107 +L+V + KST + AVWT I+ +P R+++ + G + A++ ST LIM Sbjct: 79 NLLVTMPPQEGKST---MCAVWTPIRALQLNPNRRIILATYGDSLADQHSTTARDLIMRY 135 Query: 108 ----MDILACLRPDQQAGDRVS-----VEKFDVHNSLKGVDKSPSVACIGIGGNLQGKRA 158 D L L + + G +++ V + + ++ G+ G+G + GK A Sbjct: 136 GTGVTDALTGLAVEDKLGLKINPKQAKVSSWRIDGAIGGM------VAAGLGSAITGKSA 189 Query: 159 DLLIADD 165 DL I DD Sbjct: 190 DLFIIDD 196 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 12/137 (8%) Query: 56 VQAQRSQAKST-ITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACL 114 + A R AKST ++ +F +W ++ + LII QA + I + LA Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 115 RPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQG-----KRADLLIADDVESH 169 P RV + V + D V G G ++G R DL+I DD+E+ Sbjct: 149 FPQGAGKGRV----WQVGTIVTANDAK--VQVFGSGKRMRGLRHGPHRPDLVIGDDLEND 202 Query: 170 KNSRTATNRELLLQQIR 186 +N R+ R+ L ++ Sbjct: 203 ENVRSPEQRDKLENWLK 219 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 35.0 bits (79), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 12/137 (8%) Query: 56 VQAQRSQAKST-ITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACL 114 + A R AKST ++ +F +W ++ + LII QA + I + LA Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 115 RPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQG-----KRADLLIADDVESH 169 P RV + V + D V G G ++G R DL++ DD+E+ Sbjct: 149 FPQGAGKGRV----WQVGTIVTANDAK--VQVFGSGKRMRGLRHGPHRPDLVVGDDLEND 202 Query: 170 KNSRTATNRELLLQQIR 186 +N R+ R+ L ++ Sbjct: 203 ENVRSPEQRDKLENWLK 219 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 33.1 bits (74), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 14/144 (9%) Query: 47 LEHGP----KDLMVQAQRSQAKSTITALFAVWTLIQ-DPRSRVLIISAGGTQANEISTLI 101 L H P ++L++ + KST+ +++ V +Q +P +R+++ G A+ S Sbjct: 81 LLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYGQDLAHGHSRKC 140 Query: 102 VRLIMS-----MDILACLRPDQQAGDRVSVEKFDVHN-SLKGVDKSPSVACIGIGGNLQG 155 LI D + + + + G ++ V S++G S + G+GG + G Sbjct: 141 RDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEG--GSGGLVATGLGGTITG 198 Query: 156 KRADLLIADDVESH-KNSRTATNR 178 K ADL I DD H + +AT R Sbjct: 199 KPADLFIIDDPYKHMSEADSATYR 222 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 22/148 (14%) Query: 47 LEHGP----KDLMVQAQRSQAKSTITALFAVWTLIQ-DPRSRVLIISAGGTQANEISTLI 101 L H P ++L++ + KST+ +++ V +Q +P +R+++ G A+ S Sbjct: 83 LLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYGQDLAHGHSRKC 142 Query: 102 VRLIMS-----MDILACLRPDQQAGDRVS-----VEKFDVHNSLKGVDKSPSVACIGIGG 151 LI D + + + + G ++ V ++ + G+ G+GG Sbjct: 143 RDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEGGTGGL------VATGLGG 196 Query: 152 NLQGKRADLLIADDVESH-KNSRTATNR 178 + GK ADL I DD H + +AT R Sbjct: 197 TITGKPADLFIIDDPYKHMSEADSATYR 224 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 32.0 bits (71), Expect = 0.024, Method: Compositional matrix adjust. Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 33/191 (17%) Query: 365 GKEFAAPASRVLAIDPAGG-------GKNGDETGVAVVDQLAGNIFVRSVEGIP---GGY 414 G F P + +++P G D T +AV G F R + + G Y Sbjct: 381 GVSFRHPDGSLDSLEPVMGVDFAISLSSRADYTAIAV----GGKTFQRKLCALDFSVGHY 436 Query: 415 DAD-TLKKLVAYCKRWEPHLILIEKNMGHGAFTQVLLPLLRAEGVTCAVQEVYNTGQKEQ 473 + TL ++ W + +E + ++ L + + CAV + G K + Sbjct: 437 SVEHTLDEIARLVVLWNVKRMYVETIAFQSLYRDRIIKHLAEKKIQCAVLDYKPVGNKHK 496 Query: 474 RIADTLEPIAARGALVFDESVITDDWASTLGKPADKRQLFTLMHQFIKLTRDRGALVKDD 533 RI L +G +VF+ S L A +M+ F R A KDD Sbjct: 497 RIESHLSSYFNQGNVVFN---------SRLKNQA------IVMNTFNFFGR---ASAKDD 538 Query: 534 RLDVLSIAVAH 544 D L++ H Sbjct: 539 PPDALAVVAEH 549 Score = 29.6 bits (65), Expect = 0.099, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 4/53 (7%) Query: 51 PKDLMVQAQRSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVR 103 P + ++Q R KST+T + +W + ++P R+L + E+S +R Sbjct: 86 PTNRLLQMPRGHLKSTLTVGYIMWRIYRNPNIRML----HASNIRELSEAFIR 134 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 31.6 bits (70), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 25/134 (18%) Query: 60 RSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDILACLRPDQQ 119 R TIT F + L+++P+ RV+ S A + I + Sbjct: 71 RHSKSMTITETFPSYFLMKNPKKRVITTSYSDALAKQFGRKNRDKI------------KM 118 Query: 120 AGDRVSVEKFDVH-NSLKGVDKSPSVACIGIG-------GNLQGKRADLLIADD-VESHK 170 AGD++ FD+H N S+ G G G G+ ADLLI DD +++ + Sbjct: 119 AGDQL----FDIHINPANSGVTDWSIDQYGGGMYSTSMLGGATGRGADLLIIDDPIKNRE 174 Query: 171 NSRTATNRELLLQQ 184 + + T R+ + Q+ Sbjct: 175 EAESKTIRDKIYQE 188 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 30.8 bits (68), Expect = 0.052, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 109/313 (34%), Gaps = 81/313 (25%) Query: 149 IGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRV 208 +GG ++G RA LLI DD+ K + E +L I ++ V +++ GR Sbjct: 173 LGGGIEGDRAHLLILDDIIKEKGD---GDTEDVLDWIE---AVCV------PMVKDHGRT 220 Query: 209 IFLGTPQTDASVYN---TLPAAGFGLRIWPGRYPTVEEEPAYGEHLAPYIKQRMTRDPSL 265 + +GT + +Y TL F +E PA + Y Q+ + D Sbjct: 221 VVIGTRKRPDDIYTHFRTLEGYEF------------DEYPA----ILDYWDQQFSADDDY 264 Query: 266 R------------EGGGPTGRSGQPVDPELLGEAALLSKENKQGPAYFQLQHMLCTLLSD 313 + TG + Q + PE G L K +K F ++ L Sbjct: 265 EVRRPDEDLYTAVDDPWNTGETLQVLWPEARGPRWLADKRSKMADHRFWREYSL------ 318 Query: 314 MERYPLKAQHIVVMNLGAQLPMHFVRGISAEHLRQYQVGSLKFHCSTPMDIGKEFAAPAS 373 V+M L I A+ +R V + CS IG P Sbjct: 319 -----------VIMGSSGDL-------IDAKDVR---VPAEDGGCS----IGDRDPPPKY 353 Query: 374 R-------VLAIDPAGGGKNGDETGVAVVDQLAGNIFVRSVEGIPGGYDADTLKKLVAYC 426 R VL+ DPA D + Q G + G D +LV Y Sbjct: 354 RAGPGEVVVLSHDPANSPTGDDAAFTVWLLQRDGRRRLLDCHAKSGMGPTDIKTQLVEYD 413 Query: 427 KRWEPHLILIEKN 439 + ++P +I+IE N Sbjct: 414 RAYDPAIIVIEDN 426 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 150 GGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVI 209 G N KR DL++ DDV++ + + + LL+ +D G+ R+I Sbjct: 198 GTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGS------NRRII 251 Query: 210 FLGT 213 +LG Sbjct: 252 YLGN 255 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 29.3 bits (64), Expect = 0.13, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 150 GGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRGRVI 209 G N KR DL++ DDV++ + + + LL+ +D G+ R+I Sbjct: 198 GTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATLVKCIDNYGS------NRRII 251 Query: 210 FLGT 213 +LG Sbjct: 252 YLGN 255 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 28.5 bits (62), Expect = 0.26, Method: Compositional matrix adjust. Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%) Query: 371 PASRVLAIDPAGGGKNGDETGV 392 PA+ V+ IDPA G+ GDETG+ Sbjct: 370 PAASVVGIDPADSGE-GDETGI 390 >gi|15217|lcl|protein:vir:2600 Length: 353 # NCBI annotation: gp4 # Family: family:all:543 # MgeID: mge:55 # MgeName: SIO1 # Cross-refs: genbank:acc:NP_064742;genbank:gi:9964611;genbank:GeneID: 1263055 Length = 353 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 6/111 (5%) Query: 377 AIDPAGG-GKNGDETGVAVVD-QLAGNIFVRSVEGIPGGYDADTLKKLVAYCKRWEPHLI 434 A+D A K D T + V+ N++V ++ ++ + ++ RW+ + Sbjct: 178 AVDFAYSVSKRADYTAIVVIGVDSENNVYVLDIDRFKTDKISEYFRHILDLLNRWDFRKL 237 Query: 435 LIEKNMGHGAFTQVLLP-LLRAEGVTCAVQE---VYNTGQKEQRIADTLEP 481 E A L ++ G+ + E + G KE+RIA LEP Sbjct: 238 RAECTAAQSAIVSELKDNYIKPNGLALKIDEHRPNRHQGSKEERIAAILEP 288 >gi|6267|lcl|protein:vir:95873 Length: 530 # NCBI annotation: gp68 # Family: family:all:543 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950546;genbank:gi:119952237;genbank:GeneI D:5075700 Length = 530 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 24/127 (18%) Query: 121 GDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVESHKNSRTATNREL 180 G R+ V+ F L+G + GKR L + DD+ S ++R+ T+ E Sbjct: 156 GHRLGVKMFGAKTGLRGT-------------KIFGKRPVLCVLDDLVSDDDARSRTSMEA 202 Query: 181 LLQQIRDFPSIAVDRVGAGGVIERRGRVIFLGTPQTDASVY-NTLPAAGFGLRIWP--GR 237 + + + A+D R +VIF GTP + + + + + +WP + Sbjct: 203 IKDTVYKGVNHALDPT--------RRKVIFNGTPFNKEDILIEAVESGAWDVNVWPVCEK 254 Query: 238 YPTVEEE 244 +P EE Sbjct: 255 FPCTREE 261 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 144 VACIGIGGNLQGKRADLLIADD 165 + GIG L G ADL+I DD Sbjct: 205 LVAAGIGSRLTGMPADLMIIDD 226 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 25.0 bits (53), Expect = 2.4, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 144 VACIGIGGNLQGKRADLLIADD 165 + GIG L G ADL+I DD Sbjct: 205 LVAAGIGSRLTGMPADLMIIDD 226 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 14/114 (12%) Query: 60 RSQAKSTITALFAVWTLIQDPRS------RVLIISAGGTQANEISTLIVRLIMSMDILAC 113 R K+ + +W P +LII+ Q + I + +LI D+ Sbjct: 91 RRLGKTETMCIMILWHAFTQPNKGPNNQYDILIIAPYEEQVDLIFKRLSQLI---DMSGD 147 Query: 114 LRPDQQAGDRVSVEKFDVHNSLKGVDKSPSVACIGIGGNLQGKRADLLIADDVE 167 + P + + + V + + KS S A N +G+RADL++ D+++ Sbjct: 148 VNPSRDIDKHIELPNGTVIHGITAGSKSGSGAA-----NTRGQRADLIVLDEMD 196 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 35/130 (26%) Query: 148 GIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRD-----FPSIAVDRVGAGGVI 202 G+GG+L G D+ + DD+ TA ++ L Q ++D + ++ R + Sbjct: 151 GVGGSLTGFSIDVGLNDDL-------TADAQDALSQTVQDGHQDWYATVFTTR------L 197 Query: 203 ERRGRVIFLGTPQTDASVYNTLPAAGFGLRIWPGRYPTVEE-EPAYGEHLAPYIKQ--RM 259 ++R I +GTP + + R V E +P Y P + + Sbjct: 198 QQRSGQINMGTPWSANDIM--------------ARIKKVHEGKPNYRRLSYPALNYPGEI 243 Query: 260 TRDPSLREGG 269 DP LREG Sbjct: 244 GYDPDLREGA 253 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 23.5 bits (49), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 147 IGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRG 206 +G+GG L G D+ I DD + + + L+ D S+ + R +++ Sbjct: 176 VGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQDGLENWYD--SVLLTR------LQQLS 227 Query: 207 RVIFLGTPQT 216 VI +GTP + Sbjct: 228 GVILIGTPWS 237 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 23.5 bits (49), Expect = 7.7, Method: Compositional matrix adjust. Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Query: 60 RSQAKSTITALFAVWTLIQDPRSRVLIISAGGTQANEISTLIVRLIMSMDIL 111 R KSTI + +W ++ + V I++ A E ++ RL +S + L Sbjct: 82 RQSGKSTIVTSYLLWYVLFNANVNVAILANKAATARE---MLQRLQLSYENL 130 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 23.5 bits (49), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 147 IGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRG 206 +G+GG L G D+ I DD + + + L+ D S+ + R +++ Sbjct: 176 VGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQDGLENWYD--SVLLTR------LQQLS 227 Query: 207 RVIFLGTPQT 216 VI +GTP + Sbjct: 228 GVILIGTPWS 237 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 23.1 bits (48), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 147 IGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRG 206 +G+GG L G D+ I DD + + + L+ D S+ + R +++ Sbjct: 176 VGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQDGLENWYD--SVLLTR------LQQLS 227 Query: 207 RVIFLGTPQT 216 VI +GTP + Sbjct: 228 GVILIGTPWS 237 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 23.1 bits (48), Expect = 9.3, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Query: 147 IGIGGNLQGKRADLLIADDVESHKNSRTATNRELLLQQIRDFPSIAVDRVGAGGVIERRG 206 +G+GG L G D+ I DD + + + L+ D S+ + R +++ Sbjct: 176 VGVGGPLTGFSIDVGIIDDATKNAEEALSAVVQDGLENWYD--SVLLTR------LQQLS 227 Query: 207 RVIFLGTPQT 216 VI +GTP + Sbjct: 228 GVILIGTPWS 237 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.136 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,404 Number of Sequences: 514 Number of extensions: 10808 Number of successful extensions: 159 Number of sequences better than 100.0: 43 Number of HSP's better than 100.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 24 Number of HSP's gapped (non-prelim): 53 length of query: 599 length of database: 206,069 effective HSP length: 77 effective length of query: 522 effective length of database: 166,491 effective search space: 86908302 effective search space used: 86908302 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)