Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RER2 | Genbank acc : NC_016653

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 10) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 66

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	5	lcl\|NC_016653.1_cdsid_YP_005087131.1	HHsearch (proba=100.00%)
Portal	2	lcl\|NC_016653.1_cdsid_YP_005087128.1	HHsearch (proba=100.00%)
TermL	1	lcl\|NC_016653.1_cdsid_YP_005087127.1	Blast (e-value=0)
MTP	11	lcl\|NC_016653.1_cdsid_YP_005087137.1	Blast (e-value=2e-49)
Sheath	NOT FOUND
Ad1	7	lcl\|NC_016653.1_cdsid_YP_005087133.1	HHsearch (proba=100.00%)
Hc1	8	lcl\|NC_016653.1_cdsid_YP_005087134.1	HHsearch (proba=100.00%)
Ne1	9	lcl\|NC_016653.1_cdsid_YP_005087135.1	HHsearch (proba=100.00%)
Tc1	10	lcl\|NC_016653.1_cdsid_YP_005087136.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:7771 protein:vir:104085 protein:vir:2430	Bxz2 Che12 D29	49 % 48 % 48 %
Portal	protein:vir:7768 protein:vir:4223 protein:vir:104082	Bxz2 L5 Che12	51 % 48 % 48 %
TermL	protein:vir:7767 protein:vir:4222 protein:vir:2340	Bxz2 L5 Bxb1	64 % 63 % 63 %
MTP	protein:vir:7778 protein:vir:78275 protein:vir:78506	Bxz2 Bethlehem U2	54 % 50 % 49 %
Ad1	protein:vir:7773 protein:vir:4228 protein:vir:2432	Bxz2 L5 D29	50 % 46 % 45 %
Hc1	protein:vir:7775 protein:vir:104090 protein:vir:4229	Bxz2 Che12 L5	60 % 56 % 54 %
Ne1	protein:vir:7776 protein:vir:78503 protein:vir:78298	Bxz2 U2 Bethlehem	42 % 39 % 39 %
Tc1	protein:vir:7777 protein:vir:4231 protein:vir:104092	Bxz2 L5 Che12	64 % 60 % 57 %