Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : KS5 | Genbank acc : NC_015265

Category to which the Query Phage was assigned : Myoviridae of Type1 (Cluster 9) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 46

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	41	lcl\|NC_015265.1_cdsid_YP_004306407.1	HHsearch (proba=100.00%)
Portal	44	lcl\|NC_015265.1_cdsid_YP_004306410.1	HHsearch (proba=100.00%)
TermL	43	lcl\|NC_015265.1_cdsid_YP_004306409.1	Blast (e-value=0)
MTP	19	lcl\|NC_015265.1_cdsid_YP_004306385.1	Blast (e-value=2e-54)
Sheath	20	lcl\|NC_015265.1_cdsid_YP_004306386.1	HHsearch (proba=100.00%)
Ad1	39	lcl\|NC_015265.1_cdsid_YP_004306405.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	30	lcl\|NC_015265.1_cdsid_YP_004306396.1	HHsearch (proba=100.00%)
Tc1	31	lcl\|NC_015265.1_cdsid_YP_004306397.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

Proteins Superfamilies	Observed Intergene Distance	Expected Intergene Distance
Tc1<->Ad1	8	4
Ne1<->Ad1	9	4

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:79171 protein:vir:79157 protein:vir:1153	phiE202 RSA1 phi CTX	63 % 62 % 59 %
Portal	protein:vir:79150 protein:vir:79207 protein:vir:98567	RSA1 phiE202 PSP3	69 % 58 % 58 %
TermL	protein:vir:79128 protein:vir:79177 protein:vir:1151	RSA1 phiE202 phi CTX	67 % 63 % 60 %
MTP	protein:vir:79133 protein:vir:98546 protein:vir:1846	RSA1 PSP3 186	60 % 53 % 53 %
Sheath	protein:vir:79141 protein:vir:1172 protein:vir:79181	RSA1 phi CTX phiE202	69 % 65 % 64 %
Ad1	protein:vir:79188 protein:vir:79124 protein:vir:1155	phiE202 RSA1 phi CTX	51 % 49 % 45 %
Ne1	protein:vir:79115 protein:vir:79179 protein:vir:1838	RSA1 phiE202 186	52 % 46 % 46 %
Tc1	protein:vir:79131 protein:vir:1163 protein:vir:2025	RSA1 phi CTX P2	49 % 49 % 43 %