Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : NF5 | Genbank acc : NC_015252

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 58

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	7	lcl\|NC_015252.1_cdsid_YP_004301282.1	HHsearch (proba=100.00%)
Portal	3	lcl\|NC_015252.1_cdsid_YP_004301278.1	HHsearch (proba=100.00%)
TermL	2	lcl\|NC_015252.1_cdsid_YP_004301277.1	Blast (e-value=0)
MTP	12	lcl\|NC_015252.1_cdsid_YP_004301287.1	Blast (e-value=1e-58)
Sheath	NOT FOUND
Ad1	8	lcl\|NC_015252.1_cdsid_YP_004301283.1	HHsearch (proba=100.00%)
Hc1	9	lcl\|NC_015252.1_cdsid_YP_004301284.1	HHsearch (proba=100.00%)
Ne1	10	lcl\|NC_015252.1_cdsid_YP_004301285.1	HHsearch (proba=100.00%)
Tc1	11	lcl\|NC_015252.1_cdsid_YP_004301286.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:3613 protein:vir:739 protein:vir:96123	TP901-1 Tuc2009 37	68 % 63 % 52 %
Portal	protein:vir:3609 protein:vir:3964 protein:vir:733	TP901-1 ul36 Tuc2009	53 % 53 % 52 %
TermL	protein:vir:9870 protein:vir:96840 protein:vir:107098	315.5 EW CNPH82	75 % 73 % 73 %
MTP	protein:vir:3973 protein:vir:745 protein:vir:3619	ul36 Tuc2009 TP901-1	66 % 66 % 64 %
Ad1	protein:vir:3970 protein:vir:3615 protein:vir:741	ul36 TP901-1 Tuc2009	50 % 50 % 50 %
Hc1	protein:vir:3616 protein:vir:3971 protein:vir:742	TP901-1 ul36 Tuc2009	50 % 49 % 49 %
Ne1	protein:vir:98409 protein:vir:743 protein:vir:3617	ul36 Tuc2009 TP901-1	53 % 51 % 48 %
Tc1	protein:vir:3618 protein:vir:744 protein:vir:3972	TP901-1 Tuc2009 ul36	71 % 70 % 69 %