Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 133 | Genbank acc : NC_015250

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 257

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	178	lcl\|NC_015250.1_cdsid_YP_004300759.1	HHsearch (proba=100.00%)
Portal	173	lcl\|NC_015250.1_cdsid_YP_004300754.1	HHsearch (proba=100.00%)
TermL	170	lcl\|NC_015250.1_cdsid_YP_004300751.1	Blast (e-value=0)
MTP	172	lcl\|NC_015250.1_cdsid_YP_004300753.1	Blast (e-value=5e-73)
Sheath	171	lcl\|NC_015250.1_cdsid_YP_004300752.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	166	lcl\|NC_015250.1_cdsid_YP_004300747.1	HHsearch (proba=100.00%)
Hc2	167	lcl\|NC_015250.1_cdsid_YP_004300748.1	HHsearch (proba=100.00%)
Tc2	168	lcl\|NC_015250.1_cdsid_YP_004300749.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103463 protein:vir:7214 protein:vir:6901	RB32 T4 RB69	69 % 69 % 69 %
Portal	protein:vir:108049 protein:vir:103458 protein:vir:7208	JS98 RB32 T4	57 % 56 % 56 %
TermL	protein:vir:7202 protein:vir:108053 protein:vir:103455	T4 JS98 RB32	69 % 68 % 68 %
MTP	protein:vir:108048 protein:vir:7207 protein:vir:103457	JS98 T4 RB32	73 % 66 % 65 %
Sheath	protein:vir:103456 protein:vir:7206 protein:vir:108052	RB32 T4 JS98	66 % 66 % 65 %
Ad2	protein:vir:107900 protein:vir:81013 protein:vir:103451	JS98 Phi1 RB32	62 % 58 % 58 %
Hc2	protein:vir:103452 protein:vir:7199 protein:vir:6890	RB32 T4 RB69	69 % 69 % 69 %
Tc2	protein:vir:107931 protein:vir:103453 protein:vir:7200	JS98 RB32 T4	56 % 54 % 54 %