Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Acj9 | Genbank acc : NC_014663

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 253

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	185	lcl\|NC_014663.1_cdsid_YP_004010322.1	HHsearch (proba=100.00%)
Portal	180	lcl\|NC_014663.1_cdsid_YP_004010317.1	HHsearch (proba=100.00%)
TermL	177	lcl\|NC_014663.1_cdsid_YP_004010314.1	Blast (e-value=0)
MTP	179	lcl\|NC_014663.1_cdsid_YP_004010316.1	Blast (e-value=4e-72)
Sheath	178	lcl\|NC_014663.1_cdsid_YP_004010315.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	171	lcl\|NC_014663.1_cdsid_YP_004010308.1	HHsearch (proba=100.00%)
Hc2	172	lcl\|NC_014663.1_cdsid_YP_004010309.1	HHsearch (proba=100.00%)
Tc2	174	lcl\|NC_014663.1_cdsid_YP_004010311.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107947 protein:vir:7214 protein:vir:103463	JS98 T4 RB32	75 % 74 % 73 %
Portal	protein:vir:108049 protein:vir:103458 protein:vir:7208	JS98 RB32 T4	64 % 63 % 63 %
TermL	protein:vir:7202 protein:vir:108053 protein:vir:103455	T4 JS98 RB32	72 % 72 % 72 %
MTP	protein:vir:108048 protein:vir:103457 protein:vir:98264	JS98 RB32 RB43	71 % 65 % 65 %
Sheath	protein:vir:108052 protein:vir:103456 protein:vir:6894	JS98 RB32 RB69	71 % 69 % 69 %
Ad2	protein:vir:107900 protein:vir:7198 protein:vir:103451	JS98 T4 RB32	61 % 60 % 59 %
Hc2	protein:vir:103452 protein:vir:7199 protein:vir:6890	RB32 T4 RB69	68 % 67 % 65 %
Tc2	protein:vir:107931 protein:vir:6891 protein:vir:103453	JS98 RB69 RB32	59 % 54 % 54 %