Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : CC31 | Genbank acc : NC_014662

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 279

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	177	lcl\|NC_014662.1_cdsid_YP_004010035.1	HHsearch (proba=100.00%)
Portal	172	lcl\|NC_014662.1_cdsid_YP_004010030.1	HHsearch (proba=100.00%)
TermL	169	lcl\|NC_014662.1_cdsid_YP_004010027.1	Blast (e-value=0)
MTP	171	lcl\|NC_014662.1_cdsid_YP_004010029.1	Blast (e-value=1e-81)
Sheath	170	lcl\|NC_014662.1_cdsid_YP_004010028.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	165	lcl\|NC_014662.1_cdsid_YP_004010023.1	HHsearch (proba=100.00%)
Hc2	166	lcl\|NC_014662.1_cdsid_YP_004010024.1	HHsearch (proba=100.00%)
Tc2	167	lcl\|NC_014662.1_cdsid_YP_004010025.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:107947 protein:vir:103463 protein:vir:7214	JS98 RB32 T4	84 % 81 % 81 %
Portal	protein:vir:103458 protein:vir:7208 protein:vir:6896	RB32 T4 RB69	79 % 78 % 78 %
TermL	protein:vir:108053 protein:vir:103455 protein:vir:7202	JS98 RB32 T4	83 % 83 % 83 %
MTP	protein:vir:108048 protein:vir:6895 protein:vir:7207	JS98 RB69 T4	81 % 79 % 77 %
Sheath	protein:vir:108052 protein:vir:6894 protein:vir:103456	JS98 RB69 RB32	77 % 74 % 74 %
Ad2	protein:vir:103451 protein:vir:7198 protein:vir:107900	RB32 T4 JS98	73 % 73 % 69 %
Hc2	protein:vir:103452 protein:vir:7199 protein:vir:6890	RB32 T4 RB69	72 % 72 % 72 %
Tc2	protein:vir:107931 protein:vir:103453 protein:vir:7200	JS98 RB32 T4	67 % 64 % 64 %