Query lcl|NC_014662.1_cdsid_YP_004010024.1 [gene=14] [protein=gp14 neck protein] [protein_id=YP_004010024.1] [location=91427..92227] Match_columns 266 No_of_seqs 31 out of 35 Neff 3.8 Searched_HMMs 1612 Date Thu Nov 7 15:31:00 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_166 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_166_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:6890 Length: 254 # 100.0 4E-135 2E-138 757.7 18.8 252 1-266 3-254 (254) 2 protein:vir:80995 Length: 246 100.0 2E-134 1E-137 753.4 18.1 246 1-246 1-246 (246) 3 protein:vir:7199 Length: 256 # 100.0 3E-134 2E-137 752.8 18.6 254 1-266 3-256 (256) 4 protein:vir:103452 Length: 256 100.0 5E-134 3E-137 751.4 18.7 254 1-266 3-256 (256) 5 protein:vir:6590 Length: 246 # 100.0 4E-134 3E-137 751.8 18.0 246 1-246 1-246 (246) 6 protein:vir:107937 Length: 257 100.0 6E-133 4E-136 745.5 18.0 254 1-266 3-256 (257) 7 protein:vir:101800 Length: 252 100.0 2E-132 1E-135 742.4 18.2 252 1-253 1-252 (252) 8 protein:vir:101154 Length: 252 100.0 2E-132 1E-135 742.4 18.2 252 1-253 1-252 (252) 9 protein:vir:98258 Length: 248 100.0 1E-131 6E-135 738.7 17.6 246 1-247 3-248 (248) 10 protein:vir:106285 Length: 262 100.0 2E-129 1E-132 726.0 17.2 260 1-266 3-262 (262) 11 protein:vir:100535 Length: 253 100.0 6E-129 4E-132 723.4 18.2 253 1-266 1-253 (253) 12 protein:vir:5658 Length: 278 # 100.0 2E-126 1E-129 709.3 17.6 263 1-263 3-278 (278) 13 protein:vir:104476 Length: 308 100.0 1E-109 8E-113 617.5 13.6 245 18-266 1-281 (308) 14 protein:vir:106986 Length: 292 100.0 5E-106 3E-109 598.0 14.3 241 23-266 1-261 (292) 15 protein:vir:103005 Length: 390 100.0 2.5E-94 1.6E-97 533.7 13.4 258 8-266 1-281 (390) 16 protein:vir:104739 Length: 470 100.0 5.9E-84 3.7E-87 476.9 13.8 228 23-266 1-246 (470) 17 protein:vir:97237 Length: 122 28.1 1.8 0.0011 19.2 10.0 121 25-171 1-122 (122) 18 protein:vir:1385 Length: 107 # 24.4 2.2 0.0014 18.7 8.3 106 51-173 1-107 (107) No 1 >protein:vir:6890 Length: 254 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861866;genbank:gi:32453657;genbank:GeneID:1494292 Probab=100.00 E-value=3.5e-135 Score=757.71 Aligned_cols=252 Identities=72% Similarity=1.215 Sum_probs=249.3 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) -||+|||||||+++||++|+++++||||||+|||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (254) T protein:vir:68 3 TYDKNLFAKLENRGGYSQTNETEILNPFVNFNNYENSQTLADVLVAESIQMRGIECFYVPREYVAVDLIFGEDLKNKFTK 82 (254) T ss_pred ccccceeeeecCCcchhhhhhccccceeEEeeccCchhHHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (254) T protein:vir:68 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPGLFKHQVNNQEPKEGDLIYFPMDNSLFEINWVEPYDPFYQVG 162 (254) T ss_pred ceeEEEeeehhhccCCcccchhhcCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCceEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||||+|+|++++||+|+++++.+||++||++|||++|++++|++|+++++.||++|++||+|||||| T Consensus 163 Kn~~~~l~ce~F~Ys~E~idt~i~~id~I~~~e~~~ldl~~i~~ldG~~di~~~~~~E~~~~~~e~~~f~e~~~~vn~~g 242 (254) T protein:vir:68 163 KNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSDLELNPVRNLDGIHDINIDEYSEVEQINSEASEYVEPYVVVNNRG 242 (254) T ss_pred CceEEEEEEEEEeeCCccccCCCcccCCccCcccCCcchhhHhhhcchhhccccchhhHHHHHhhhhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCccccccccCcccCCCCCccccccC Q lcl|NC_014662. 241 SPKVEPPRNRPPANHVASPFDDGFML 266 (266) Q Consensus 241 ~~~~~~p~~~~~~~~~~~pF~d~~~~ 266 (266) ++ +|||||+||- T Consensus 243 ~~--------------~~pf~~~~~~ 254 (254) T protein:vir:68 243 RQ--------------NSPFDDGFMN 254 (254) T ss_pred CC--------------CCcccccccC Confidence 64 3799999999 No 2 >protein:vir:80995 Length: 246 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469495;genbank:gi:157311452;genbank:GeneID:5602161 Probab=100.00 E-value=2.2e-134 Score=753.37 Aligned_cols=246 Identities=62% Similarity=1.094 Sum_probs=244.3 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) |||+|||||||+||||++||++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:80 1 MFDSTLFARLESQKDYENTRQTEILNPYVNFNSHTNTQTLADIMVAESIQMRGVEMYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeeeCCCCchhhHHHHHHHHHHHHcCceEEEechhhhcccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:80 81 AWKFAAYINSFDGYEGAGNFFQSFGYTANDELTITINPNLFKHQVDNKEPKSGDLFYIPMSNDLFEISYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchHhhhhCCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||||+|+|+++++|+|+++++.+||++||++|||++|+++++++|+++++.|+++|++||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~t~i~~~d~I~~de~~~ldl~~i~nldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:80 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCcccchhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCcccc Q lcl|NC_014662. 241 SPKVEP 246 (266) Q Consensus 241 ~~~~~~ 246 (266) ||++.+ T Consensus 241 spf~~~ 246 (246) T protein:vir:80 241 SPFADF 246 (246) T ss_pred CccccC Confidence 888766 No 3 >protein:vir:7199 Length: 256 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049773;genbank:gi:9632588;genbank:GeneID:1258695 Probab=100.00 E-value=2.7e-134 Score=752.82 Aligned_cols=254 Identities=72% Similarity=1.192 Sum_probs=251.3 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) -||+|||||||+++||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~skF~k 82 (256) T protein:vir:71 3 TYDKNLFAKLENRTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) T ss_pred ccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (256) T protein:vir:71 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) T ss_pred ceeEEEEeehhhccCCccccceecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCcEEEEEcccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||+|+|+|+++++|+|+++++++||++||++|+|++|++++++++++++++|+++|++|++|||||| T Consensus 163 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~e~~eldl~~i~~ldg~~di~~~~~~e~~~i~~e~~~~ve~~~~in~~G 242 (256) T protein:vir:71 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNAVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) T ss_pred CCeEEEEEEEEEecCCceecccCCCCCcccCCcccccccccccccCcccccccccccchhhhhhccccccccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCccccccccCcccCCCCCccccccC Q lcl|NC_014662. 241 SPKVEPPRNRPPANHVASPFDDGFML 266 (266) Q Consensus 241 ~~~~~~p~~~~~~~~~~~pF~d~~~~ 266 (266) +|++ ++||||+||- T Consensus 243 ~~~~------------~~pfd~~~~~ 256 (256) T protein:vir:71 243 KSFE------------SSPFDNDFMD 256 (256) T ss_pred CCCc------------CCCccccccC Confidence 9876 3689999999 No 4 >protein:vir:103452 Length: 256 # NCBI annotation: head completion # Family: family:all:1104 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803104;genbank:gi:116326384;genbank:GeneID:4405481 Probab=100.00 E-value=5e-134 Score=751.39 Aligned_cols=254 Identities=72% Similarity=1.199 Sum_probs=251.3 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) -||+|||||||+++||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~~~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (256) T protein:vir:10 3 TYDKNLFAKLENHTGYSQTNETEILNPYVNFNHYKNSQILADVLVAESIQMRGVECYYVPREYVSPDLIFGEDLKNKFTK 82 (256) T ss_pred ccccceeeeecCCcchhhhhhhcccceeeeeeccCchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+||||++||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (256) T protein:vir:10 83 AWKFAAYLNSFEGYEGAKSFFSNFGMQVQDEVTLSINPNLFKHQVNGKEPKEGDLIYFPMDNSLFEINWVEPYDPFYQLG 162 (256) T ss_pred ceeEEEEeehhhccCCccccceecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEEeccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||+|+|+|+++++|+|+++++++||++||++|||++|++++++++++++++|++.|++|++|||||| T Consensus 163 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~eldl~pi~~ldG~~di~~~~~~e~~~~~~e~~~~v~~~~~in~~G 242 (256) T protein:vir:10 163 QNAIRKITAGKFIYSGEEINPVLQKNEGINIPEFSELELNPVRNLNGIHDINIDQYAEVDQINSEAKEYVEPYVVVNNRG 242 (256) T ss_pred CCeEEEEEEEEEeeCCceecccCCCCccccCCccchhhhccccccccccccCccccccchhhhhccccccccceEecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCccccccccCcccCCCCCccccccC Q lcl|NC_014662. 241 SPKVEPPRNRPPANHVASPFDDGFML 266 (266) Q Consensus 241 ~~~~~~p~~~~~~~~~~~pF~d~~~~ 266 (266) +|++ ++||||+||- T Consensus 243 ~~~~------------~~pfd~~~~~ 256 (256) T protein:vir:10 243 KSFE------------SSPFDNDFMD 256 (256) T ss_pred CCCc------------CCCccccccC Confidence 9876 3689999999 No 5 >protein:vir:6590 Length: 246 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891721;genbank:gi:33620667;genbank:GeneID:1725307 Probab=100.00 E-value=4.1e-134 Score=751.85 Aligned_cols=246 Identities=63% Similarity=1.098 Sum_probs=244.3 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) |||+|||||||+||||++||++++||||||+|||.+||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~~~~~~~lNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (246) T protein:vir:65 1 MFNNTLFARLESQKDYENTRQTEILNPYVNFHKYTNTQTLADVMVAEAIQMRGVELYYIPREFVKPDMIFGEDVQSKFTK 80 (246) T ss_pred CCcccceeeecCCcchhhhcccccccceeecCCCcchhhHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+||||++||||+| T Consensus 81 a~~ieaYl~~~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (246) T protein:vir:65 81 AWKFAAYINSFDGYEGAGNFFSSFGYQANDELTFTVNPNLFKHQVDDQEPKSGDLIYIPMSNDLFEINYVEPYQPFFQAG 160 (246) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhcCCCCCccccEEEEcCCCcEEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||||+|+|+++++|+|+++++.+||++||++|||++|+++++++|+++++.|+++|++||+|||||| T Consensus 161 Kn~v~~l~ce~F~Ys~E~~~~~i~~~d~I~~de~~~ldl~~i~~ldg~~Din~~~~~e~~~~~~e~~~f~~~~~~~~~~g 240 (246) T protein:vir:65 161 KNAMRKIIAEKFVYSGEELRPELQRNEGINVDEFADLDLAPITNLDGLTDINLDQYKEDKQFRSEGQDFIDPFDPINGKG 240 (246) T ss_pred CCeEEEEEEEEEeecCcccccCCCCccccCCCCcccccHHHHhhcccccccCccchhhhhhhhcchhhhcccceeecCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCcccc Q lcl|NC_014662. 241 SPKVEP 246 (266) Q Consensus 241 ~~~~~~ 246 (266) ||++.+ T Consensus 241 spf~~~ 246 (246) T protein:vir:65 241 SPFADF 246 (246) T ss_pred CccccC Confidence 888766 No 6 >protein:vir:107937 Length: 257 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595290;genbank:gi:161622596;genbank:GeneID:5783656 Probab=100.00 E-value=5.8e-133 Score=745.54 Aligned_cols=254 Identities=65% Similarity=1.152 Sum_probs=250.3 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) -||+|||||||+|+||++|+++++||||||++||.+||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~t~~~~~lnPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (257) T protein:vir:10 3 TFDSSLFAKLENNTGYANTNETEIMNPFVNFYRHENTQTLADALVAESIQMRGIELYYIPREYVNPDQLFGEDLQNKFTK 82 (257) T ss_pred ccccceeeeecCCcchhhhhhhccccceeecccCCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||+++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 162 (257) T protein:vir:10 83 AWKFAGYLDSFEGYSGDNTYFSKFGMMVNDEVTITINPNLFKHQCNGTEPVSGDLIYFPMDNSLFEINWVQPYDPFYQVG 162 (257) T ss_pred ceeEEEeeehhhccCCCcceeeecCceecceEEEEEccchhhhhccCCCCccccEEEEcCCCceEEEecccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||||+|.+++++++++.++++.+||++||++|||++|+++++++|++++++|+++|++|++|||||| T Consensus 163 kn~~~~l~ce~F~Ys~E~l~pel~~n~~~~V~e~~eldl~~~~~ldG~~di~~~~~~E~~~~~~e~~~fi~p~~~~n~~g 242 (257) T protein:vir:10 163 TNVQRRITATKFIYNGEELRPELQRNEGINIPEFSELDLMPVKNIDGLADISDIQYEEVNEINAEAAEFVHPYVVINGRG 242 (257) T ss_pred CceEEEEEEEEeeeCCcccccccCCcccCCCCCccchhhhhhhhccchhhcCCchhhhHHHHHHhhhhhhccccccCCCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCccccccccCcccCCCCCccccccC Q lcl|NC_014662. 241 SPKVEPPRNRPPANHVASPFDDGFML 266 (266) Q Consensus 241 ~~~~~~p~~~~~~~~~~~pF~d~~~~ 266 (266) ++.+ .+||||+||- T Consensus 243 ~~~~------------~~pf~~~~~~ 256 (257) T protein:vir:10 243 EDAP------------PTAFDDAFLD 256 (257) T ss_pred CCCC------------CCcccchhcc Confidence 7543 2899999999 No 7 >protein:vir:101800 Length: 252 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238877;genbank:gi:66391952;genbank:GeneID:3416627 Probab=100.00 E-value=2.2e-132 Score=742.39 Aligned_cols=252 Identities=53% Similarity=0.935 Sum_probs=244.7 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) |||+|||||||+++||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||+++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||||+|+|+++++|+|+ +.++.||++||++|||++|++++|++|++++++|+++|++||+||+||| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 7799999999999999999999999999999999999999999999999 Q ss_pred CCccccccccCcc Q lcl|NC_014662. 241 SPKVEPPRNRPPA 253 (266) Q Consensus 241 ~~~~~~p~~~~~~ 253 (266) .+..+.|+..--+ T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 6665555444333 No 8 >protein:vir:101154 Length: 252 # NCBI annotation: neck protein # Family: family:all:1104 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932505;genbank:gi:37651631;genbank:GeneID:2610647 Probab=100.00 E-value=2.2e-132 Score=742.39 Aligned_cols=252 Identities=53% Similarity=0.935 Sum_probs=244.7 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) |||+|||||||+++||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 1 m~d~~lfa~le~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~~Ed~~SkF~k 80 (252) T protein:vir:10 1 MMDKSLFATLENRGGYMRTNEKNILNPYVKFNKHEGTQALQDTLVAESIQMRGIEFYYLEREFTDLDLLFGEDVNSRFEK 80 (252) T ss_pred CCCccceeEecCCcchhhhhhhccccceeeecCccchhHHHHHHHHHHHHHcCceEEEechhhccccccccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||+++||||+| T Consensus 81 a~~ieaYl~s~egy~G~gd~~SKFG~~~~DEvt~~Is~~rF~~qv~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (252) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHTQNDEIRISINPGLFKYQVNGKEPALGDLIYMPMDNSLFEITWVEPYSPFYQNG 160 (252) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||||+|+|+++++|+|+ +.++.||++||++|||++|++++|++|++++++|+++|++||+||+||| T Consensus 161 kn~~~~l~ce~F~Ys~E~idt~~~~id~Ie-~~~s~ldl~~i~~ldG~~Di~~~~~~e~~~~~~e~~~~~e~~~~i~~~~ 239 (252) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKITPVVQEKPEIE-DMYNGLDLAPLLNLDGMIDQKIDQFAENIAVQQKVKQYAEPFDPISTNS 239 (252) T ss_pred CCeEEEEEEEEEeeCCceecCcccccCccc-hhhhccchHHHhhcCCeeccccccchhhHHHHHhhhhhhccceeecCCC Confidence 999999999999999999999999999999 7799999999999999999999999999999999999999999999999 Q ss_pred CCccccccccCcc Q lcl|NC_014662. 241 SPKVEPPRNRPPA 253 (266) Q Consensus 241 ~~~~~~p~~~~~~ 253 (266) .+..+.|+..--+ T Consensus 240 ~~~~~~pf~~~~~ 252 (252) T protein:vir:10 240 FGNFDSPFGKHEA 252 (252) T ss_pred CCCcCCcccccCC Confidence 6665555444333 No 9 >protein:vir:98258 Length: 248 # NCBI annotation: gp14 head completion # Family: family:all:1104 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239191;genbank:gi:66391666;genbank:GeneID:3416360 Probab=100.00 E-value=1e-131 Score=738.67 Aligned_cols=246 Identities=54% Similarity=0.912 Sum_probs=244.5 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) -||+|||||||+++||++|++++|||||||+|+|++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 3 ~~d~~lfa~l~~~~gy~~t~~~~~lnPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 82 (248) T protein:vir:98 3 NWDESLFAQLSTGEGVDRNLKDQVTNPYVNWYKYNPTQQLHDSLTAESIQMKSPDMYYVRREFVNIDKILGEDRESKFTK 82 (248) T ss_pred ccccceeeEecCCcchhhhhhcccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+ +||||+| T Consensus 83 a~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~-dPFYQ~G 161 (248) T protein:vir:98 83 SWKIAAYIESYANYEGQRDFFSKFGLSSNDEMTLVLNPRLFAHQTDGGIPVLGDLVYFPMDNSLFEITWVEA-DPFYQFG 161 (248) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCceEEEEecCC-CchhhhC Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 5999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||+|+|+|+++++|+|+++.++.||++||++|||++|+++++++|++++++|+++|++|++|||||| T Consensus 162 kn~~~~l~ce~F~Ys~E~~~~~l~~~d~i~~~~~~~iDl~~i~~ldg~~Di~~~~~~e~~~~~~E~~~~~~~~~vin~~g 241 (248) T protein:vir:98 162 DRPQRKINLAKFIYTGEELAPELQRNEGIHIEPDAELDLEPIRNLDGLADINIEQYEEDKEFEREGDEFIESFDVVNGRG 241 (248) T ss_pred CCeEEEEEEEEeeeCCccccccCCCccccCCCCCcchhHHHhhcCccccccCcccccchhhhhhhhhhhhcccceecCcC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCccccc Q lcl|NC_014662. 241 SPKVEPP 247 (266) Q Consensus 241 ~~~~~~p 247 (266) +|++++| T Consensus 242 ~~~~~~~ 248 (248) T protein:vir:98 242 SPFATLP 248 (248) T ss_pred CCccCCC Confidence 9999999 No 10 >protein:vir:106285 Length: 262 # NCBI annotation: gp14 neck protein # Family: family:all:1104 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944101;genbank:gi:38640145;genbank:GeneID:2658033 Probab=100.00 E-value=2.2e-129 Score=725.95 Aligned_cols=260 Identities=47% Similarity=0.779 Sum_probs=247.4 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) -||+|||||||+|+||++|+++++||||||+++|++||+|+++||+|||||||+|||||||++|++|+||||+++|||++ T Consensus 3 ~~d~~lfa~le~~~gy~~~~~~~vlNPYfN~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlpRe~v~~D~i~gEd~~SkF~k 82 (262) T protein:vir:10 3 ARNQSMFAQLETGAGYNKTYQTNVLNPYVNKHEYEPTLSLHEMLVAESIQMTGVEMYYIRREFVNFDRIFGEDMQSKFKK 82 (262) T ss_pred ccccceeeEecCCCcccCcchhccccceeccCCcCchhhHHHHHHHHHHHHcCceEEEcchhhhcccccccccccccccc Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+|+||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+++||||+| T Consensus 83 a~~ieaYl~s~egy~G~~d~~SKFG~~v~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPl~nsLFEI~~VE~~~PFYQ~G 162 (262) T protein:vir:10 83 TYKVAMYLESFDEYSGQRDFFSKFGMQVNDEITMSVSPKLFETQADGDRVKEGDLIYFPLNNSLFEVTWVEPSSPVVKRE 162 (262) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEccchhhhhhcCCCCccccEEEEcCCCceEEEeeccCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||||+|+|++++||+|... ..+++||++|||++|++++|++|+++++.|+++|+++|++|+|+| T Consensus 163 kn~~~~l~ce~F~Ys~E~i~~~i~~id~i~~e---~~~l~~i~~lDg~~di~~~q~~e~~~~~~e~~~fv~~~d~v~~~g 239 (262) T protein:vir:10 163 QLAKYKVTAQKFIYSGEEIKPEFDPNRYVLGE---DDPLSQIKALDGRADISLDEFAEDDAFNEEAEDFVVEFDNIIGNG 239 (262) T ss_pred CceEEEEEEEEEeeCCccccccCccccccccc---cccccccccccceeecccccccchhHHhhhhhhhcchhcccCCCC Confidence 99999999999999999999999999999754 236899999999999999999999999999999999999999999 Q ss_pred CCccccccccCcccCCCCCccccccC Q lcl|NC_014662. 241 SPKVEPPRNRPPANHVASPFDDGFML 266 (266) Q Consensus 241 ~~~~~~p~~~~~~~~~~~pF~d~~~~ 266 (266) ||++++-.++ -...+||||-=-. T Consensus 240 sp~~~~~~~~---~~~~~~fdd~~~~ 262 (262) T protein:vir:10 240 TPIAEHKPTK---PAPVSAFDDLESF 262 (262) T ss_pred CcccccCCCC---CCCCChhhhhhcC Confidence 9998765322 2334799985444 No 11 >protein:vir:100535 Length: 253 # NCBI annotation: gp14 head completion protein # Family: family:all:1104 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656376;genbank:gi:109290127;genbank:GeneID:4156513 Probab=100.00 E-value=6.4e-129 Score=723.40 Aligned_cols=253 Identities=57% Similarity=0.948 Sum_probs=239.1 Q ss_pred CCcccceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheeccccccccccccccccc Q lcl|NC_014662. 1 MMNKNLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTK 80 (266) Q Consensus 1 ~~~~~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~ 80 (266) |||+|||||||+++||++|+++++||||||++||++||+|+++||+|||||||+|||||||++|++|+||+|+++|||++ T Consensus 1 ~~~~~lfa~l~~~~gy~~t~~~~~lNPYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~skF~k 80 (253) T protein:vir:10 1 MMDKSLFATLENRSGYQQTNEQNILNPYVKFNRYEGSQALHDTLVAESIQMRGLEFYYLEREYTNLDLLFGEDPNSRFEK 80 (253) T ss_pred CcCccceeEecCCcchhhhhhhccccceeeccccCchhHHHHHHHHHHHHHcCceEEEcchhhccccCcccccccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 81 AWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 81 a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) ||+||||++||+||+|+++||||||||++|||||+|||+||+++++|+||+|||||||||+|+||||+|||+++||||+| T Consensus 81 a~~ieaYl~~~egy~G~gd~~SKFG~~v~DEvt~~Is~~rF~~~v~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFYQ~G 160 (253) T protein:vir:10 81 AWKFAAWLNSFESYEGQQSFFSKFGHQQNDEVRISINPGLFKYQVNGKEPKLGDLIYMPMDNSLFEITWVEPYTPFYQMG 160 (253) T ss_pred ceeEEEeeehhhccCCccceeeecCceecceEEEEEcCchhhhhccCCCCccccEEEEcCCCcEEEEeccCCCCchhhhC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTG 240 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g 240 (266) |+|||+|+|+||+||+|+|+|++++||+|+ +.++.||++||++|+|++|+++++++|+++++.|+++|+++|++|+|+| T Consensus 161 kn~~~~l~ce~F~Ys~E~i~tgi~~id~Ie-~~~~~ldl~~i~~l~G~~Di~~~~~~e~~~~~~e~~~~v~~~~~~~~~~ 239 (253) T protein:vir:10 161 KNPIRVIVAQKFIYSGEKLAPQFQEKPEIE-DQYNGLDLEPILNLDGFIDQKINEFGENVQAQNEARPFVEPFDPISTNP 239 (253) T ss_pred CceEEEEEEEEEecCCccccccCccccccc-chhhhhhhhhhhcCCCccccccccccccchhhhccccccccceeccCCC Confidence 999999999999999999999999999998 6689999999999999999999999999999999999999999986665 Q ss_pred CCccccccccCcccCCCCCccccccC Q lcl|NC_014662. 241 SPKVEPPRNRPPANHVASPFDDGFML 266 (266) Q Consensus 241 ~~~~~~p~~~~~~~~~~~pF~d~~~~ 266 (266) . .+++|||-..--- T Consensus 240 ~------------~g~~spf~~~~~~ 253 (253) T protein:vir:10 240 V------------NSFNSPFGRHEGQ 253 (253) T ss_pred C------------ccccCcccccCCC Confidence 2 2222333211000 No 12 >protein:vir:5658 Length: 278 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899597;genbank:gi:34419584;genbank:GeneID:2545699 Probab=100.00 E-value=2.4e-126 Score=709.26 Aligned_cols=263 Identities=46% Similarity=0.776 Sum_probs=253.6 Q ss_pred CCcc---cceeeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccc Q lcl|NC_014662. 1 MMNK---NLFAKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSK 77 (266) Q Consensus 1 ~~~~---~~fa~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~sk 77 (266) -||+ |||||||+|+||++|+++++||||||++||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|| T Consensus 3 ~~d~~~~~lfa~l~~~~gy~~~~~~~~~NpYfn~~~~~~eQ~L~e~LV~EsIqm~GvdvyYlPRe~v~~D~i~~Ed~~sk 82 (278) T protein:vir:56 3 AYDTNTGGMFAKLESQKGYDQIYNNHLVNPYFNWVNHTNEQNLTDMLVAESIINRGVECVYLRREMEKVDLVFGEDPMSK 82 (278) T ss_pred cccccCceEEEEecCCcccchhcccccccceeeccCCCchhHHHHHHHHHHHHHcCceEEEcchhhhccccccccccccc Confidence 7999 7999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhh Q lcl|NC_014662. 78 FTKAWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFY 157 (266) Q Consensus 78 F~~a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFy 157 (266) |++||+||||++||+||+|+++||||||||++|||||+|||+||+++++++||+|||||||||+|+||||+|||+++||| T Consensus 83 F~ka~~ieaYl~~~egy~G~~d~~SKFG~~~~DEvt~~Is~~rF~~~~~~~rP~EGDLIYfPm~n~LFEI~~VE~~~PFY 162 (278) T protein:vir:56 83 FTQNFRMSLYVESFEGWDGDGDWYSKFGFQVNDEMNVCINPKLFAQQGDGKQPLMGDLIYFPLANSLFEISWIEREDPWY 162 (278) T ss_pred cccceeEEEEeehhhccCCCceeeeecCceecceEEEEEccchhhhcCCCCCCccccEEEEcCCCcEEEEEccCCCCchh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhCCceEEEEEEEEeecCCcccCCCCcc--ccce-ecccchh-----hhhhhhhhhhchhhcccccccchhhhhhccccc Q lcl|NC_014662. 158 QAGRNAIRKITAEKFIYSGEQLKPELQR--NDGI-NIPEFSE-----LDLDPIHELDGLSDINEVPYQEVDQMNDEADKD 229 (266) Q Consensus 158 Q~Gk~~v~~l~c~~F~Ys~E~i~t~~~~--iD~i-~~~~~~~-----Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f 229 (266) |+||+|||+|+|+||+||+|+|+|+.++ +|+| .+.++++ ||++||++|+|++|++++++++.+++++|++.| T Consensus 163 Q~Gk~~~~~l~ce~F~Ys~E~~dtg~pe~~~d~i~~i~ef~e~~~~~ld~~~~~~l~G~~di~~~~~~e~~~~~~e~~~f 242 (278) T protein:vir:56 163 MNGVLPMRKMKMTKFVYSGEEINLEKPEAVIDSIDDILNFGEDTDEMIDIDKINALDGRWDIGIEQGAEITQIEDEVDKF 242 (278) T ss_pred hhCCceEEEEEEEEeeecCceecccCCccccccccchhhcccchhhcccccccccccchhcccchhhhhhhhhhhcccee Confidence 9999999999999999999999988655 5554 4556666 999999999999999999999999999999999 Q ss_pred cccceeecCCCCCccccccccCcccCC--CCCcccc Q lcl|NC_014662. 230 VKQYEVVNGTGSPKVEPPRNRPPANHV--ASPFDDG 263 (266) Q Consensus 230 ~e~~~~v~g~g~~~~~~p~~~~~~~~~--~~pF~d~ 263 (266) ++|+++|+++|++.+.+|++.++++++ .||||+- T Consensus 243 ~~~~~v~~~~~~~~~t~~~n~~~g~~v~~~~~~D~f 278 (278) T protein:vir:56 243 YESEQVVPSGSDVQPTDPRNATIGFNVNNSNPFDSF 278 (278) T ss_pred eecCceecCCCCccccCcccccCCCcCccccccccC Confidence 999999999999999999999999888 5999986 No 13 >protein:vir:104476 Length: 308 # NCBI annotation: gp14 # Family: family:all:1104 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214650;genbank:gi:61806291;genbank:GeneID:3294531 Probab=100.00 E-value=1.3e-109 Score=617.55 Aligned_cols=245 Identities=30% Similarity=0.474 Sum_probs=218.4 Q ss_pred hhhhhccc----------cceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccccccceeeeec Q lcl|NC_014662. 18 RTNEEEVL----------NPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTKAWQFAAY 87 (266) Q Consensus 18 ~~~~~~al----------npyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~a~~ieaY 87 (266) -+++++.+ |||||+|||++||+|+|+||+|||||||+|||||||++|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~py~~~~~~~~~~~n~~~~~~eQ~L~e~LV~EsIqm~G~dvyYlpRe~v~~D~i~~Ed~~skF~~a~~ieaY 80 (308) T protein:vir:10 1 MAIQNSPAQDYVQSDYSNAGRLKANASSQEQKFIENLVVESIEIYGQDIYYVPRTIVNRDSVFEEDSDGKFESAKAIRAY 80 (308) T ss_pred CccccCCCCCcccccccccceEEEeccCchhHHHHHHHHHHHHhcCceEEEechhhcccccccccccccccccceeEEEE Confidence 34444444 55569999999999999999999999999999999999999999999999999999999999 Q ss_pred cchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccC-------CCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 88 INSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQ-------EPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 88 ~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~-------~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) |+|||||+|+++||||||||++|||||+|||+||++++++. ||+|||||||||+|+|||||||||++||||+| T Consensus 81 ~~~~egy~g~~~~~SKFG~~~~DE~t~~is~~rF~~~v~~~~~~~~~~rP~EGDLIYfPl~~~lFEI~~VE~~~PFyQ~G 160 (308) T protein:vir:10 81 VNNVEGWEGQGELLSKFGIRIEDKTTFIFSREKFKEHVDDSVTLNVEGRPNEGDLIWFPITKHLFEIKFVEVERPFYQLG 160 (308) T ss_pred eechhccCCCcceeeecCceecceEEEEEccchhhhhcCCccccccCCCCccccEEEecCCCceEEEEcccCCCchhhhC Confidence 99999999999999999999999999999999999999984 99999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccc---cceeec Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVK---QYEVVN 237 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e---~~~~v~ 237 (266) |+|||+|+|+||+||+|+|+|+++++|+|+++.++.|+++||++++|.++++..+++++.++++|++.|.. +..|+| T Consensus 161 k~~~~~l~ce~F~Ys~E~~~~~i~~iD~i~~~~~~~LdL~pIs~l~G~fdInE~v~gest~itAEv~~wds~v~~ItV~N 240 (308) T protein:vir:10 161 RNYVWECQCELFEYSDEEINTGITELDAIETAFANAITVGLVAGGTGTFTVGETITGGTSNVTAEVKSFDASTRTLIVIN 240 (308) T ss_pred CceEEEEEEEEEeeCCcccccCCccccccccccccceeeeeeccCCccccccceecccccceEEEEEEecCCceEEEEEe Confidence 99999999999999999999999999999999999999999999999999999999999999999999944 566666 Q ss_pred CCCCCccccccccCcccC----------------CCCCccccccC Q lcl|NC_014662. 238 GTGSPKVEPPRNRPPANH----------------VASPFDDGFML 266 (266) Q Consensus 238 g~g~~~~~~p~~~~~~~~----------------~~~pF~d~~~~ 266 (266) ++| +++.+| +|+.+ .+.+++..+-. T Consensus 241 ~gG-sftspp---tItGsts~a~~t~~s~~~~~nt~~~~~~n~~f 281 (308) T protein:vir:10 241 RSG-TFTVPE---TVTGGTSSASWTTATYNTIDNQNLDYDQNNDF 281 (308) T ss_pred CCC-ceeeCc---EEEeccCCceeEEEeeeecccCCCcccCCcce Confidence 666 555666 23221 11222222211 No 14 >protein:vir:106986 Length: 292 # NCBI annotation: neck protein gp14 # Family: family:all:1104 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195128;genbank:gi:58532905;uniprot:Q5GQV9;genbank:GeneID:3260483 Probab=100.00 E-value=4.8e-106 Score=597.99 Aligned_cols=241 Identities=25% Similarity=0.434 Sum_probs=219.5 Q ss_pred ccccceec--ccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccccccceeeeeccchhhccCccchh Q lcl|NC_014662. 23 EVLNPYVN--FHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTKAWQFAAYINSFEGYEGANTF 100 (266) Q Consensus 23 ~alnpyfN--~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~a~~ieaY~~n~egf~g~~d~ 100 (266) -+|||||| +|||.+||+|+|+||+|||||||+|||||||++|+ |++|+|+++|||++||+|||||+|||||+|+++| T Consensus 1 m~~npyfn~~~~~~~~eQ~L~~~LV~Esiq~~G~dvyYlpRe~~~-d~~~~E~~~skF~~a~~ieaY~~~~eg~~g~~~~ 79 (292) T protein:vir:10 1 MPTSPYFPSYYSGYSGEQNLVQDLVDEQIKLFGTDIYYLPRTILR-DNTLDDVIYNKFERQFQVEMLLQNVEGFGSPSEF 79 (292) T ss_pred CCcCccccccccCcCchhHHHHHHHHHHHHhcCceEEEechhhhc-ccccccccccccccceeEEEEeechhccCCCcce Confidence 89999999 68999999999999999999999999999999999 9999999999999999999999999999999999 Q ss_pred hhhcCceeeeeEEEEEcchhhhhhhcc------CCCccCcEEEEcCCCcEEEEeeeccCChhhhhCCceEEEEEEEEeec Q lcl|NC_014662. 101 YSKFGMQVNDEVTLSINPGLFKHQVNG------QEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAGRNAIRKITAEKFIY 174 (266) Q Consensus 101 ~SKFG~~~~DE~tf~IS~~~F~~~~~~------~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~Gk~~v~~l~c~~F~Y 174 (266) |||||||++|||||+|||+||++++++ +||+|||||||||+|+||||+||||++||||+||+|||+|+|+||+| T Consensus 80 ~sKFG~~~~De~t~~is~~~f~~~~~~~~~~~~~~P~eGDLIYfPl~~~lFEI~~ve~~~PfyQ~gk~~~~~l~~~~F~Y 159 (292) T protein:vir:10 80 ISKFGLRITDEVRFIVSQRRWDEEAVNYDLNVNGRPNEGDLLYFPLTQDIYEIKFVEREDPFYQLGKNYFYIMTAEIYEY 159 (292) T ss_pred eeecCceecceEEEEEccchhhhhcCcccccccCCCccccEEEEcCCCcEEEEEcccCCCchhhhCCceEEEEEEEEEee Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999999 Q ss_pred CCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccc---cceeecCCCCCccccccccC Q lcl|NC_014662. 175 SGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVK---QYEVVNGTGSPKVEPPRNRP 251 (266) Q Consensus 175 s~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e---~~~~v~g~g~~~~~~p~~~~ 251 (266) |+|+|+|+++++|+|+++.+..|+++|++++.|.++++....++...+++|+..|.+ ++.|++++|+..+..+.-. T Consensus 160 s~E~idtgl~eiD~i~~~~sseLdL~pi~~g~G~f~inE~vtge~sg~~AEv~sw~~~t~~L~V~n~~GsF~T~e~i~G- 238 (292) T protein:vir:10 160 GSDNISTGVEEIDELETLFSSAIAIALSIGGTGDFDLGEIVTGGISGTEAEVKSWDSSSRILQVINRTGTFEEGESVTG- 238 (292) T ss_pred cCceecCCCCcccccccccccccceeecccCCccccCCceeeecccceEEEEEEccCCCceEEEEeCccccccCceeeE- Confidence 999999999999999999999999999999999999999999999999999999977 6678999998776554111 Q ss_pred cccCCC---------CCccccccC Q lcl|NC_014662. 252 PANHVA---------SPFDDGFML 266 (266) Q Consensus 252 ~~~~~~---------~pF~d~~~~ 266 (266) ..|.+ ++..+.=-- T Consensus 239 -~~Sga~~~v~si~~~~g~~~t~a 261 (292) T protein:vir:10 239 -NDSGSVWVVDSFDTLNNTNSEYD 261 (292) T ss_pred -eecCCeEEeeEEEEeCCCCCccc Confidence 01111 111110000 No 15 >protein:vir:103005 Length: 390 # NCBI annotation: gp110 # Family: family:all:1104 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717777;genbank:gi:113200614;genbank:GeneID:4239009 Probab=100.00 E-value=2.5e-94 Score=533.72 Aligned_cols=258 Identities=26% Similarity=0.388 Sum_probs=199.9 Q ss_pred eeecCCcchhhhhhhccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccccccceeeeec Q lcl|NC_014662. 8 AKLENKSGYSRTNEEEVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTKAWQFAAY 87 (266) Q Consensus 8 a~le~~~~y~~~~~~~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~a~~ieaY 87 (266) -...+.++|+++++.+++|||||+|||.+||+|+|+||+|||||||+||||||||+|++|+||+|+++|||++||+|||| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~~~lv~e~i~~~g~~~~y~~r~~~~~d~~~~e~~~~~f~~~~~~~~y 80 (390) T protein:vir:10 1 MTYSNDPPNNCIQSDYTSSCRLNLNGSAQEQTFMENLIVESIELYGQNVYYLPRIYVNRDTILNEVETSRFEQALSVRAY 80 (390) T ss_pred CeecCCCcccceecceeeccEEEEeccCchhHHHHHHHHHHhHhcCceEEEechheeccccccccccccccccceEEEEE Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccC-------CCccCcEEEEcCCCcEEEEeeeccCChhhhhC Q lcl|NC_014662. 88 INSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQ-------EPKEGDLIYFPMDNSLFEISWVEPYDPFYQAG 160 (266) Q Consensus 88 ~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~-------~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~G 160 (266) |+|||||+|+++||||||||++|||||+|||+||++++++. ||+|||||||||+++||||+||||++||||+| T Consensus 81 ~~~~~~~~~~~~~~skfg~~~~de~~~~~~~~~~~~~~~~~~~~~~~~~p~egdliy~p~~~~lfei~~ve~~~p~yq~G 160 (390) T protein:vir:10 81 VNNVEGWEGQGDLLSKFGVRIEDKTTFIFSRKKFTTAVDDNAVLNVEGRPNEGDLIWFPATRHLFEIKFVEAERPFYQLG 160 (390) T ss_pred eechhccCCccceeeecCceecceEEEEECCcchhhhhCCcccccccCCCCCCceEEecCCCCEEEEEecCCCCCceEcc Confidence 99999999999999999999999999999999999999984 99999999999999999999999999999999 Q ss_pred CceEEEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccc-cchh-hhhhccccccccceeecC Q lcl|NC_014662. 161 RNAIRKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPY-QEVD-QMNDEADKDVKQYEVVNG 238 (266) Q Consensus 161 k~~v~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~-~e~~-~~~~e~~~f~e~~~~v~g 238 (266) |+|+|+|+|++|+||+|+++++.+++|.+............+..--+.......-. .... ....-...---....|.+ T Consensus 161 ~nyt~~i~a~lf~ySge~iat~~seid~I~~~~~~~v~~~~~t~g~~~~t~~~~v~~~g~ga~~~a~v~~g~Vt~vtItn 240 (390) T protein:vir:10 161 KGYVWECQCELFEYSDEDLDTGVAEIDAIETAFANAIKLVMDAGGTGAFTVGEEIVGDLYLATATATISGDAVDAVTVTD 240 (390) T ss_pred CceeeeeEEeeeccCCccccccccccccccccccceeeeeeccCCcccccccceeeecCcceeEEEEecCCeEEEEEEee Confidence 99999999999999999999999999988776544433333222111110000000 0000 000000111113456677 Q ss_pred CCCCccccccccCcccCCCCC--------cc------ccccC Q lcl|NC_014662. 239 TGSPKVEPPRNRPPANHVASP--------FD------DGFML 266 (266) Q Consensus 239 ~g~~~~~~p~~~~~~~~~~~p--------F~------d~~~~ 266 (266) .|++-+..|.+. ++++.... .+ ..-+. T Consensus 241 ~GsGYt~~~~pt-Vtisgg~gtgAt~tatv~~~G~VtsItIt 281 (390) T protein:vir:10 241 GGEHYKSALPPT-VTITGGGGSGATATATVSSAGIVTGITIT 281 (390) T ss_pred CCCCcccCceeE-EEecCCCCccceeeeeecccceEEEEEEe Confidence 777766544221 11111110 00 00000 No 16 >protein:vir:104739 Length: 470 # NCBI annotation: T4-like neck protein # Family: family:all:1104 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214353;genbank:gi:61805993;genbank:GeneID:3294259 Probab=100.00 E-value=5.9e-84 Score=476.86 Aligned_cols=228 Identities=30% Similarity=0.550 Sum_probs=179.3 Q ss_pred ccccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccccccccceeeeeccchhhccCccchhhh Q lcl|NC_014662. 23 EVLNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQSKFTKAWQFAAYINSFEGYEGANTFYS 102 (266) Q Consensus 23 ~alnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~skF~~a~~ieaY~~n~egf~g~~d~~S 102 (266) -+|||||| |||.+||+|+|+||+|||||||+||||||||+|++|+||+|+++|||++||+|||||+|||||+|+++||| T Consensus 1 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (470) T protein:vir:10 1 MALNPFFL-QGTSSEQRLTQDLINEHLKIYGVEVTYIPRKYVNTKSIIEEVQSSKFDDNFAIEAYVNTYEGYGGQGDVLT 79 (470) T ss_pred CcccceeE-cCCCchhHHHHHHHHHHhHhccceEEEechhhcccccccccccccccccceeEEEEeecccCcCCcceeee Confidence 89999997 99999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hcCceeeeeEEEEEcchhhh------------------hhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhCCceE Q lcl|NC_014662. 103 KFGMQVNDEVTLSINPGLFK------------------HQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAGRNAI 164 (266) Q Consensus 103 KFG~~~~DE~tf~IS~~~F~------------------~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~Gk~~v 164 (266) |||++++|||+|+|||+||+ ++....||+|||||||||+|+||||+|||++.||||+||+|+ T Consensus 80 ~fg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~egdl~~~p~~~~~~~i~~ve~~~p~~~~G~~~~ 159 (470) T protein:vir:10 80 KFGMSIRDEVTLTISKERFEDFIAPFMAGLDDGPGGNEEVILATRPREGDLVFFPLGSRLFEVKFVEHEDPFYQLGKNYV 159 (470) T ss_pred ecCcccceEEEEEECCccccccccchhhcccCcccccccccccCCcccccEEEecCCCCEEEEEecCCCCcchhcCccee Confidence 99999999999999999995 555568999999999999999999999999999999999999 Q ss_pred EEEEEEEeecCCcccCCCCccccceecccchhhhhhhhhhhhchhhcccccccchhhhhhccccccccceeecCCCCCcc Q lcl|NC_014662. 165 RKITAEKFIYSGEQLKPELQRNDGINIPEFSELDLDPIHELDGLSDINEVPYQEVDQMNDEADKDVKQYEVVNGTGSPKV 244 (266) Q Consensus 165 ~~l~c~~F~Ys~E~i~t~~~~iD~i~~~~~~~Ld~dpi~~ldg~~d~~~~~~~e~~~~~~e~~~f~e~~~~v~g~g~~~~ 244 (266) |+|+|++|+|++|.+++.+..++........... -.+++.- ... ........-.-.-..+.+.|++.+ T Consensus 160 ~~it~~~f~ysge~~s~~v~~~~~~~~~~g~~~t----~t~~~~g-~~~-------~~t~~~~~g~vt~ititn~Gsgyt 227 (470) T protein:vir:10 160 YQLKCELFEYEDEVIDTSIDAIDTVVQDDGYISK----LQLVGIG-RTA-------EVAASIGVGYVREIFLNNDGSGFT 227 (470) T ss_pred EEeeeceeEecCCccccceeccccccccccccee----eeecCCC-ccc-------eeeeeecceeeeEeEeecccccee Confidence 9999999999999999999998876654322111 1111100 000 000001111223356667777777 Q ss_pred ccccccCcccCCCCCccccccC Q lcl|NC_014662. 245 EPPRNRPPANHVASPFDDGFML 266 (266) Q Consensus 245 ~~p~~~~~~~~~~~pF~d~~~~ 266 (266) ..|. .++........+--. T Consensus 228 ~~pt---Vti~~~~~~~~~~a~ 246 (470) T protein:vir:10 228 SPPT---ITFSASPAFTDARAV 246 (470) T ss_pred ccCE---EEEccCCCCCCccce Confidence 6662 111111111111000 No 17 >protein:vir:97237 Length: 122 # NCBI annotation: hypothetical protein ORF025 # Family: family:all:704 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294533;genbank:gi:149408254;genbank:GeneID:5237102 Probab=28.10 E-value=1.8 Score=19.21 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=76.9 Q ss_pred ccceecccccchhHHHHHHHHHHHHHhcCcceEEeeheecccccccccccc-cccccceeeeeccchhhccCccchhhhh Q lcl|NC_014662. 25 LNPYVNFHNHFNTQALFDTLVAESIQMRGVKCYYVPREYVKPDYVFGEDLQ-SKFTKAWQFAAYINSFEGYEGANTFYSK 103 (266) Q Consensus 25 lnpyfN~~g~~~eQ~L~~~LV~E~Iqm~G~dv~YlpRe~v~~D~v~~E~~~-skF~~a~~ieaY~~n~egf~g~~d~~SK 103 (266) ++.| ..-+.. ..++|+-+|..|.+.+..-..-|+-.|+... +.-...|...+.+.++.--.=+|.+ T Consensus 1 M~~y------~~~~~~----a~~Li~kfG~~vtl~r~~~g~y~~~~g~~~p~~~t~~~~~~~gv~~~~~~~~idGtl--- 67 (122) T protein:vir:97 1 MARF------DSAIAL----AKKLIKKNGQAVTLRGFTAGAAPDPAKPWKPGGNVAADQTIEAVFLDYEQRYIDGQT--- 67 (122) T ss_pred Cccc------hHHHHH----HHHHHHHhCCceEEEEeccceeCCCCCceecCCceeeeeeeEEEeeccchhhccCcE--- Confidence 2322 233333 4455666999999888887777777665322 3335678999999888754333222 Q ss_pred cCceeeeeEEEEEcchhhhhhhccCCCccCcEEEEcCCCcEEEEeeeccCChhhhhCCceEEEEEEEE Q lcl|NC_014662. 104 FGMQVNDEVTLSINPGLFKHQVNGQEPKEGDLIYFPMDNSLFEISWVEPYDPFYQAGRNAIRKITAEK 171 (266) Q Consensus 104 FG~~~~DE~tf~IS~~~F~~~~~~~~P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~Gk~~v~~l~c~~ 171 (266) |+..|..-+...... .-.|+-||+|-+ +..-|.|-.|++-+| .|--..|+|...+ T Consensus 68 --I~~GD~~l~~~a~~~------~~~P~~gD~v~~--~g~~~~Vi~v~~i~p---a~~~v~y~lqlRk 122 (122) T protein:vir:97 68 --IRMGDQRVFMPAEGL------TAPPEVEGLVLR--GLEVWKVIAVKPLNP---NGQAIMYELQVRQ 122 (122) T ss_pred --EeecCEEEEEeeCCC------ccccccCCEEEe--CCEEEEEEeccccCC---CCceEEEEEEeeC Confidence 455555444332221 247888999976 556789999987665 5555677777777 No 18 >protein:vir:1385 Length: 107 # NCBI annotation: Gp8 protein # Family: family:all:3858 # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612837;genbank:gi:20065971;genbank:GeneID:935786 Probab=24.41 E-value=2.2 Score=18.73 Aligned_cols=106 Identities=14% Similarity=0.168 Sum_probs=73.0 Q ss_pred hcCcc-eEEeeheecccccccccccccccccceeeeeccchhhccCccchhhhhcCceeeeeEEEEEcchhhhhhhccCC Q lcl|NC_014662. 51 MRGVK-CYYVPREYVKPDYVFGEDLQSKFTKAWQFAAYINSFEGYEGANTFYSKFGMQVNDEVTLSINPGLFKHQVNGQE 129 (266) Q Consensus 51 m~G~d-v~YlpRe~v~~D~v~~E~~~skF~~a~~ieaY~~n~egf~g~~d~~SKFG~~~~DE~tf~IS~~~F~~~~~~~~ 129 (266) |.+-. |....++- .+|. .|... ..+...+++-|.+...-| .++++-=+++..-.++|+|. |..-++... T Consensus 1 ~~~~hRI~i~~~~~-~~D~-~G~~~-~~w~~~~~~WA~v~~~~g----~E~~~a~~~~~~~~~~f~iR---y~~~i~~~~ 70 (107) T protein:vir:13 1 MARYERISIKKLEE-KNIK-GRRQE-ECLIPFYDCWAEILDLYG----QELYGALQMKLENTIIFKIR---YCKKVEELR 70 (107) T ss_pred CCcceEEEEEeeee-eeCC-CCCee-cceEeEEEEEEEEecCCc----hheeecceeheeeeEEEEEE---ecCCccccc Confidence 66643 55554444 4574 45443 468889999999998754 56666667888888888883 434445555 Q ss_pred CccCcEEEEcCCCcEEEEeeeccCChhhhhCCceEEEEEEEEee Q lcl|NC_014662. 130 PKEGDLIYFPMDNSLFEISWVEPYDPFYQAGRNAIRKITAEKFI 173 (266) Q Consensus 130 P~EGDLIYfP~~n~LFEI~~Ve~~~PFyQ~Gk~~v~~l~c~~F~ 173 (266) +..++-|.+ ++++|+|+.|.+.+ +++-..+|.|+.=. T Consensus 71 ~t~~~Ri~~--~g~~y~I~~v~~~~-----~~~~~l~i~c~eV~ 107 (107) T protein:vir:13 71 NKENFIVEW--QGRKYEIYYPDFLG-----YNKQFVKLKCKEVL 107 (107) T ss_pred cCcCcEEEE--CCeEEEEEecCCcc-----cCCeEEEEEEEEeC Confidence 667777766 78999999997543 25557899999765 Done!