Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : Acj61 | Genbank acc : NC_014661

Category to which the Query Phage was assigned : Myoviridae of Type2 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 241

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	184	lcl\|NC_014661.1_cdsid_YP_004009801.1	HHsearch (proba=100.00%)
Portal	179	lcl\|NC_014661.1_cdsid_YP_004009796.1	HHsearch (proba=100.00%)
TermL	175	lcl\|NC_014661.1_cdsid_YP_004009792.1	Blast (e-value=0)
MTP	178	lcl\|NC_014661.1_cdsid_YP_004009795.1	Blast (e-value=4e-81)
Sheath	176	lcl\|NC_014661.1_cdsid_YP_004009793.1	HHsearch (proba=100.00%)
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	171	lcl\|NC_014661.1_cdsid_YP_004009788.1	HHsearch (proba=100.00%)
Hc2	172	lcl\|NC_014661.1_cdsid_YP_004009789.1	HHsearch (proba=100.00%)
Tc2	173	lcl\|NC_014661.1_cdsid_YP_004009790.1	HHsearch (proba=100.00%)
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:6901 protein:vir:103463 protein:vir:7214	RB69 RB32 T4	81 % 81 % 80 %
Portal	protein:vir:7208 protein:vir:6896 protein:vir:108049	T4 RB69 JS98	68 % 68 % 67 %
TermL	protein:vir:103455 protein:vir:7202 protein:vir:6893	RB32 T4 RB69	72 % 72 % 71 %
MTP	protein:vir:108048 protein:vir:6895 protein:vir:101188	JS98 RB69 44RR2.8t	82 % 72 % 69 %
Sheath	protein:vir:108052 protein:vir:6894 protein:vir:103456	JS98 RB69 RB32	75 % 71 % 69 %
Ad2	protein:vir:107900 protein:vir:103451 protein:vir:7198	JS98 RB32 T4	62 % 56 % 56 %
Hc2	protein:vir:103452 protein:vir:7199 protein:vir:107937	RB32 T4 JS98	69 % 69 % 68 %
Tc2	protein:vir:107931 protein:vir:103453 protein:vir:7200	JS98 RB32 T4	61 % 57 % 57 %