Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 15 lcl|NC_013694.1_cdsid_YP_003358718.1 HHsearch (proba=100.00%)
Portal 12 lcl|NC_013694.1_cdsid_YP_003358715.1 HHsearch (proba=100.00%)
TermL 11 lcl|NC_013694.1_cdsid_YP_003358714.1 Blast (e-value=0)
MTP 22 lcl|NC_013694.1_cdsid_YP_003358725.1 Blast (e-value=1e-82)
Sheath NOT FOUND
Ad1 17 lcl|NC_013694.1_cdsid_YP_003358720.1 HHsearch (proba=100.00%)
Hc1 19 lcl|NC_013694.1_cdsid_YP_003358722.1 HHsearch (proba=100.00%)
Ne1 20 lcl|NC_013694.1_cdsid_YP_003358723.1 HHsearch (proba=100.00%)
Tc1 21 lcl|NC_013694.1_cdsid_YP_003358724.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:104085
protein:vir:2430
protein:vir:4226
Che12
D29
L5
74 %
74 %
73 %
Portal protein:vir:7768
protein:vir:4223
protein:vir:2427
Bxz2
L5
D29
68 %
60 %
60 %
TermL protein:vir:7767
protein:vir:2340
protein:vir:4222
Bxz2
Bxb1
L5
76 %
71 %
70 %
MTP protein:vir:7778
protein:vir:104093
protein:vir:4232
Bxz2
Che12
L5
74 %
64 %
63 %
Ad1 protein:vir:7773
protein:vir:2345
protein:vir:104088
Bxz2
Bxb1
Che12
66 %
54 %
53 %
Hc1 protein:vir:7775
protein:vir:104090
protein:vir:4229
Bxz2
Che12
L5
70 %
61 %
58 %
Ne1 protein:vir:78503
protein:vir:78298
protein:vir:2347
U2
Bethlehem
Bxb1
52 %
52 %
52 %
Tc1 protein:vir:7777
protein:vir:2436
protein:vir:104092
Bxz2
D29
Che12
70 %
59 %
58 %