Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : PH10 | Genbank acc : NC_012756

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 2) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 54

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	36	lcl\|NC_012756.1_cdsid_YP_002925169.1	HHsearch (proba=100.00%)
Portal	34	lcl\|NC_012756.1_cdsid_YP_002925167.1	HHsearch (proba=100.00%)
TermL	32	lcl\|NC_012756.1_cdsid_YP_002925165.1	Blast (e-value=1e-173)
MTP	42	lcl\|NC_012756.1_cdsid_YP_002925175.1	Blast (e-value=5e-44)
Sheath	NOT FOUND
Ad1	38	lcl\|NC_012756.1_cdsid_YP_002925171.1	HHsearch (proba=100.00%)
Hc1	39	lcl\|NC_012756.1_cdsid_YP_002925172.1	HHsearch (proba=100.00%)
Ne1	40	lcl\|NC_012756.1_cdsid_YP_002925173.1	HHsearch (proba=100.00%)
Tc1	41	lcl\|NC_012756.1_cdsid_YP_002925174.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:962 protein:vir:100172 protein:vir:100884	bIL285 phi AT3 Lc-Nu	37 % 29 % 29 %
Portal	protein:vir:80134 protein:vir:95378 protein:vir:960	bacteriophage bv1 GBSV1 bIL285	53 % 51 % 47 %
TermL	protein:vir:959 protein:vir:80117 protein:vir:95379	bIL285 bacteriophage bv1 GBSV1	53 % 50 % 50 %
MTP	protein:vir:968 protein:vir:80149 protein:vir:95370	bIL285 bacteriophage bv1 GBSV1	45 % 40 % 40 %
Ad1	protein:vir:964 protein:vir:95374 protein:vir:80144	bIL285 GBSV1 bacteriophage bv1	48 % 45 % 44 %
Hc1	protein:vir:95373 protein:vir:80114 protein:vir:965	GBSV1 bacteriophage bv1 bIL285	36 % 35 % 29 %
Ne1	protein:vir:966 protein:vir:95372 protein:vir:80116	bIL285 GBSV1 bacteriophage bv1	40 % 37 % 34 %
Tc1	protein:vir:80109 protein:vir:95371 protein:vir:967	bacteriophage bv1 GBSV1 bIL285	35 % 32 % 32 %