BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_012756.1_cdsid_YP_002925175.1 [gene=PH10_gp42] [protein=hypothetical protein] [protein_id=YP_002925175.1] [location=19678..20256] (192 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf5... 168 5e-44 gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: maj... 141 7e-36 gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hy... 139 2e-35 gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: pu... 93 2e-21 gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: pu... 38 1e-04 gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: ma... 38 1e-04 gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: ma... 38 1e-04 gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: ma... 38 1e-04 gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hyp... 35 8e-04 gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: majo... 22 4.3 gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: maj... 22 7.9 >gi|17556|lcl|protein:vir:968 Length: 202 # NCBI annotation: Orf50 # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076622;genbank:gi:13095730;genbank:GeneID :920287 Length = 202 Score = 168 bits (425), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 86/184 (46%), Positives = 115/184 (62%), Gaps = 2/184 (1%) Query: 3 QENKVTFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHF 62 ++NKV FGL+NV+ A + G Y++ R+PGA+EL+L+ G+ KAD+IDY+ Sbjct: 5 EKNKVEFGLENVYFARATTDLLSGATTYEKPIRWPGAVELSLEASGDLIKFKADNIDYYI 64 Query: 63 MNSNEGYEGKFKISHIIEMFATKILGEIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKT 122 +N+GY+GK + + E FATKILGE+ + GV TE ++ E + FALMF+F GDK T Sbjct: 65 SGNNQGYDGKLTTALVPEEFATKILGEV--VEGGVQTEYSNVETSPFALMFQFEGDKKAT 122 Query: 123 RHVLYYCSASRPGNGSKTKNGTNVNERELGFKASPRPLDSVVKRSITSADNKEIYDNWFK 182 RHVLY CSASRP GS T + + N EL F ASPRP D VK +YD WF Sbjct: 123 RHVLYNCSASRPSVGSSTIDKGDPNTTELSFSASPRPSDKAVKTKTRPDTEPTVYDAWFN 182 Query: 183 KVYE 186 VY+ Sbjct: 183 SVYD 186 >gi|5735|lcl|protein:vir:95370 Length: 194 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764482;genbank:gi:115334636;genbank:GeneI D:5179257 Length = 194 Score = 141 bits (355), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 103/182 (56%), Gaps = 3/182 (1%) Query: 5 NKVTFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMN 64 NK+ +GL+NVH A I G I Y R PGA+ LTL+P GE+ ADD Y+ Sbjct: 7 NKIKYGLRNVHYAVITEDPVTGAITYGTPKRIPGAVSLTLEPAGETFDFYADDSAYYSEA 66 Query: 65 SNEGYEGKFKISHIIEMFATKILGEIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRH 124 +N GY+G+ +++++ + F +LG+ + GV+ E AD FAL+FEF GDK RH Sbjct: 67 TNNGYDGELEVANLTDEFRIDVLGDTY--ENGVMYENADQVTKPFALLFEFQGDKKAKRH 124 Query: 125 VLYYCSASRPGNGSKTK-NGTNVNERELGFKASPRPLDSVVKRSITSADNKEIYDNWFKK 183 VLYYC ASRP +TK T L F A PRP VK T ++ +YD+W+ + Sbjct: 125 VLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDSWYTQ 184 Query: 184 VY 185 V+ Sbjct: 185 VH 186 >gi|12650|lcl|protein:vir:80149 Length: 193 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425610;genbank:gi:155042943;genbank:Ge neID:5469578 Length = 193 Score = 139 bits (351), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 74/182 (40%), Positives = 103/182 (56%), Gaps = 3/182 (1%) Query: 5 NKVTFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMN 64 NK+ +GL+NVH A I A G I Y R PGA+ L+L+P GE+ ADD Y+ Sbjct: 7 NKIKYGLRNVHYAVITEDPATGAITYGTPKRIPGAVSLSLEPAGETFDFYADDSAYYSEA 66 Query: 65 SNEGYEGKFKISHIIEMFATKILGEIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRH 124 +N GY+G+ +++++ + F +LG+ GV+ E AD FAL+FEF GDK RH Sbjct: 67 TNNGYDGELELANLTDEFRIDVLGDTY--VNGVMYENADQVTKPFALLFEFQGDKKAKRH 124 Query: 125 VLYYCSASRPGNGSKTK-NGTNVNERELGFKASPRPLDSVVKRSITSADNKEIYDNWFKK 183 VLYYC ASRP +TK T L F A PRP VK T ++ +YD+W+ + Sbjct: 125 VLYYCKASRPTVAGQTKAENTEPQTSTLNFTARPRPDTKEVKADTTPEIDQALYDSWYTQ 184 Query: 184 VY 185 V+ Sbjct: 185 VH 186 >gi|13209|lcl|protein:vir:81151 Length: 195 # NCBI annotation: putative major capsid protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285818;genbank:gi:148747739;genbank:Ge neID:5247194 Length = 195 Score = 92.8 bits (229), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/195 (33%), Positives = 99/195 (50%), Gaps = 12/195 (6%) Query: 4 ENKVTFGLKNVHVAPIKSIGADGVI-AYDEIFRFPGAMELTLDPKGESTPIKADDIDYHF 62 +NKVTFGL NVH+A + DG +++ + PGA+ +P+GE + AD+ Y Sbjct: 6 QNKVTFGLDNVHIAFL----IDGATPSWETPVKIPGAVRFAPEPQGEESTFYADNGPYFS 61 Query: 63 MNSNEGYEGKFKISHIIEMFATKILGEIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKT 122 SN GY + +++++ + ++LG DA G+L E D FAL+ + GDK Sbjct: 62 YTSNNGYTAELEMANLPDDILAEMLGWEIDAN-GMLVETTDGTPKEFALLGQILGDKKNR 120 Query: 123 RHVLYYCSASRPGNGSKTKNGTNVNERELGFKASPRPLD----SVVKRSITSAD-NKEIY 177 R V Y C ASRP T+ G +V + P++ +VV+ + D N+ IY Sbjct: 121 RFVYYRCKASRPTAEHNTR-GESVEPTTQTLNITILPIEIGGKNVVRGVLELNDTNQAIY 179 Query: 178 DNWFKKVYEPTAVAA 192 DN+F V P A A Sbjct: 180 DNFFSTVTVPGATAG 194 >gi|2378|lcl|protein:vir:105009 Length: 202 # NCBI annotation: putative major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459974;genbank:gi:85701389;genbank:GeneID :3882150 Length = 202 Score = 37.7 bits (86), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 8 TFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMNSNE 67 T G+ N+ A + + I Y ++ + GA+++ L K S + +D+ S+ Sbjct: 11 TVGVDNLVYAKVLQDDS-SAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDG 69 Query: 68 GYEGKFKISHIIEMFATKILG--EIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRHV 125 E + ++ + I G E+KD GVL EK + E A+ F F +K R+V Sbjct: 70 ETEVEIEVRGLSLSTKADIEGFPEVKD---GVLDEKREGEKPYLAIGFRFLKANDKYRYV 126 Query: 126 -LYYCSASRPGNGSKTK-NGTNVNERELGFKASPRPLDSVVKRSITSADNKE------IY 177 L S+ ++TK + N +L R D R+ +AD E + Sbjct: 127 WLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDD---RTKFTADEDEPTFTKLVG 183 Query: 178 DNWFKKVYE 186 DNWF KVYE Sbjct: 184 DNWFNKVYE 192 >gi|2431|lcl|protein:vir:107619 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338193;genbank:gi:77020189;genbank:GeneID :3703750 Length = 202 Score = 37.7 bits (86), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 8 TFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMNSNE 67 T G+ N+ A + + I Y ++ + GA+++ L K S + +D+ S+ Sbjct: 11 TVGVDNLVYAKVLQDDS-SAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDG 69 Query: 68 GYEGKFKISHIIEMFATKILG--EIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRHV 125 E + ++ + I G E+KD GVL EK + E A+ F F +K R+V Sbjct: 70 ETEVEIEVRGLSLSTKADIEGFPEVKD---GVLDEKREGEKPYLAIGFRFLKANDKYRYV 126 Query: 126 -LYYCSASRPGNGSKTK-NGTNVNERELGFKASPRPLDSVVKRSITSADNKE------IY 177 L S+ ++TK + N +L R D R+ +AD E + Sbjct: 127 WLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDD---RTKFTADEDEPTFTKLVG 183 Query: 178 DNWFKKVYE 186 DNWF KVYE Sbjct: 184 DNWFNKVYE 192 >gi|2484|lcl|protein:vir:102845 Length: 202 # NCBI annotation: major tail protein, phi13 family # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338142;genbank:gi:77020241;genbank:GeneID :3703754 Length = 202 Score = 37.7 bits (86), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 8 TFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMNSNE 67 T G+ N+ A + + I Y ++ + GA+++ L K S + +D+ S+ Sbjct: 11 TVGVDNLVYAKVLQDDS-SAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDG 69 Query: 68 GYEGKFKISHIIEMFATKILG--EIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRHV 125 E + ++ + I G E+KD GVL EK + E A+ F F +K R+V Sbjct: 70 ETEVEIEVRGLSLSTKADIEGFPEVKD---GVLDEKREGEKPYLAIGFRFLKANDKYRYV 126 Query: 126 -LYYCSASRPGNGSKTK-NGTNVNERELGFKASPRPLDSVVKRSITSADNKE------IY 177 L S+ ++TK + N +L R D R+ +AD E + Sbjct: 127 WLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDD---RTKFTADEDEPTFTKLVG 183 Query: 178 DNWFKKVYE 186 DNWF KVYE Sbjct: 184 DNWFNKVYE 192 >gi|2967|lcl|protein:vir:102037 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512320;genbank:gi:89152489;genbank:GeneID :3953030 Length = 202 Score = 37.7 bits (86), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%) Query: 8 TFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMNSNE 67 T G+ N+ A + + I Y ++ + GA+++ L K S + +D+ S+ Sbjct: 11 TVGVDNLVYAKVLQDDS-SAIKYTDVKKMEGAVKVKLTKKVASEVMWSDNRKSEIAESDG 69 Query: 68 GYEGKFKISHIIEMFATKILG--EIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRHV 125 E + ++ + I G E+KD GVL EK + E A+ F F +K R+V Sbjct: 70 ETEVEIEVRGLSLSTKADIEGFPEVKD---GVLDEKREGEKPYLAIGFRFLKANDKYRYV 126 Query: 126 -LYYCSASRPGNGSKTK-NGTNVNERELGFKASPRPLDSVVKRSITSADNKE------IY 177 L S+ ++TK + N +L R D R+ +AD E + Sbjct: 127 WLLKGKLSQEEEEAETKKDKPNFQTTKLKGSFIERDFDD---RTKFTADEDEPTFTKLVG 183 Query: 178 DNWFKKVYE 186 DNWF KVYE Sbjct: 184 DNWFNKVYE 192 >gi|13401|lcl|protein:vir:1275 Length: 200 # NCBI annotation: hypothetical protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690767;genbank:gi:22855007;genbank:GeneID :955222 Length = 200 Score = 34.7 bits (78), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 5 NKVTFGLKNVHVAPIKSIGADGVIAYDEIFRFPGAMELTLDPKGESTPIKADDIDYHFMN 64 KV GL H+A + D + + PGA+ + LDPK E+ AD+ + ++ Sbjct: 2 GKVLSGLDMFHIAEVLKDTKD-ELEFSVPEELPGAVSMKLDPKSETETFYADNGAFAQLS 60 Query: 65 SNEGYEGKFKISHIIEMFATKILGEIKDAQTGVLTEKADAEFTSFALMFEFSGDKNKTRH 124 S +G+ +++ + KI G K + G+ AD AL F R+ Sbjct: 61 SLGDIDGEMEVADLPLDMQAKIFG--KTVEGGIHFSSADDRTLEIALGFRAKISTGGYRY 118 Query: 125 VLYYCSASRP 134 Y+ +P Sbjct: 119 --YWALKGKP 126 >gi|15619|lcl|protein:vir:196 Length: 234 # NCBI annotation: major tail subunit # Family: family:all:628 # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037706;genbank:gi:9634159;genbank:GeneID: 1262542 Length = 234 Score = 22.3 bits (46), Expect = 4.3, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 14/33 (42%) Query: 133 RPGNGSKTKNGTNVNERELGFKASPRPLDSVVK 165 R S NG L K P P+DSV+K Sbjct: 116 RQHTWSSGTNGVVAATFSLRLKGKPVPIDSVLK 148 >gi|17137|lcl|protein:vir:1388 Length: 198 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612840;genbank:gi:20065974;genbank:GeneID :935777 Length = 198 Score = 21.6 bits (44), Expect = 7.9, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 14/106 (13%) Query: 96 GVLTEKADAEFTSFALMFEFSGDKNKTRHVLYYCSASRPG-------NGSKTKNGTNVNE 148 G L D + A+ + K V YYC G NG K K T ++ Sbjct: 94 GFLINNVDDQAKEVAIGWRARQTNGKYEFVWYYCGKFNSGWDDQYETNGKKPK--TQTDK 151 Query: 149 RELGFKASPRPLDSVVKRSIT-----SADNKEIYDNWFKKVYEPTA 189 + F + ++ ++ T D K NWF KV E A Sbjct: 152 MKGTFYGRQKDGNTSIEVDETFLLESHNDAKSSITNWFSKVQEKEA 197 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.315 0.133 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,490 Number of Sequences: 514 Number of extensions: 4052 Number of successful extensions: 24 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 12 length of query: 192 length of database: 206,069 effective HSP length: 67 effective length of query: 125 effective length of database: 171,631 effective search space: 21453875 effective search space used: 21453875 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 35 (18.1 bits)