Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : 5093 | Genbank acc : NC_012753

Category to which the Query Phage was assigned : Siphoviridae of Type1 (Cluster 1) (Read more about that category)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 48

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	19	lcl\|NC_012753.1_cdsid_YP_002925102.1	HHsearch (proba=100.00%)
Portal	16	lcl\|NC_012753.1_cdsid_YP_002925099.1	HHsearch (proba=100.00%)
TermL	15	lcl\|NC_012753.1_cdsid_YP_002925098.1	Blast (e-value=0)
MTP	24	lcl\|NC_012753.1_cdsid_YP_002925107.1	Blast (e-value=1e-22)
Sheath	NOT FOUND
Ad1	21	lcl\|NC_012753.1_cdsid_YP_002925104.1	HHsearch (proba=100.00%)
Hc1	NOT FOUND
Ne1	22	lcl\|NC_012753.1_cdsid_YP_002925105.1	HHsearch (proba=100.00%)
Tc1	23	lcl\|NC_012753.1_cdsid_YP_002925106.1	HHsearch (proba=100.00%)
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	NOT FOUND
Hc3	NOT FOUND
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:9820 protein:vir:3033 protein:vir:3613	315.4 PhiNIH1.1 TP901-1	49 % 49 % 45 %
Portal	protein:vir:9815 protein:vir:3028 protein:vir:4782	315.4 PhiNIH1.1 MM1	66 % 66 % 58 %
TermL	protein:vir:4781 protein:vir:98922 protein:vir:80960	MM1 BCJA1c A500	77 % 65 % 52 %
MTP	protein:vir:4792 protein:vir:9825 protein:vir:3038	MM1 315.4 PhiNIH1.1	36 % 35 % 35 %
Ad1	protein:vir:4788 protein:vir:9821 protein:vir:3034	MM1 315.4 PhiNIH1.1	50 % 49 % 46 %
Ne1	protein:vir:9823 protein:vir:3036 protein:vir:4790	315.4 PhiNIH1.1 MM1	48 % 48 % 44 %
Tc1	protein:vir:9824 protein:vir:3037 protein:vir:4791	315.4 PhiNIH1.1 MM1	55 % 55 % 42 %