Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 19 lcl|NC_012753.1_cdsid_YP_002925102.1 HHsearch (proba=100.00%)
Portal 16 lcl|NC_012753.1_cdsid_YP_002925099.1 HHsearch (proba=100.00%)
TermL 15 lcl|NC_012753.1_cdsid_YP_002925098.1 Blast (e-value=0)
MTP 24 lcl|NC_012753.1_cdsid_YP_002925107.1 Blast (e-value=1e-22)
Sheath NOT FOUND
Ad1 21 lcl|NC_012753.1_cdsid_YP_002925104.1 HHsearch (proba=100.00%)
Hc1 NOT FOUND
Ne1 22 lcl|NC_012753.1_cdsid_YP_002925105.1 HHsearch (proba=100.00%)
Tc1 23 lcl|NC_012753.1_cdsid_YP_002925106.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:9820
protein:vir:3033
protein:vir:3613
315.4
PhiNIH1.1
TP901-1
49 %
49 %
45 %
Portal protein:vir:9815
protein:vir:3028
protein:vir:4782
315.4
PhiNIH1.1
MM1
66 %
66 %
58 %
TermL protein:vir:4781
protein:vir:98922
protein:vir:80960
MM1
BCJA1c
A500
77 %
65 %
52 %
MTP protein:vir:4792
protein:vir:9825
protein:vir:3038
MM1
315.4
PhiNIH1.1
36 %
35 %
35 %
Ad1 protein:vir:4788
protein:vir:9821
protein:vir:3034
MM1
315.4
PhiNIH1.1
50 %
49 %
46 %
Ne1 protein:vir:9823
protein:vir:3036
protein:vir:4790
315.4
PhiNIH1.1
MM1
48 %
48 %
44 %
Tc1 protein:vir:9824
protein:vir:3037
protein:vir:4791
315.4
PhiNIH1.1
MM1
55 %
55 %
42 %