Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 38 lcl|NC_011344.1_cdsid_YP_002268008.1 HHsearch (proba=100.00%)
Portal 36 lcl|NC_011344.1_cdsid_YP_002268006.1 HHsearch (proba=100.00%)
TermL 35 lcl|NC_011344.1_cdsid_YP_002268005.1 Blast (e-value=0)
MTP 43 lcl|NC_011344.1_cdsid_YP_002268013.1 Blast (e-value=1e-124)
Sheath NOT FOUND
Ad1 39 lcl|NC_011344.1_cdsid_YP_002268009.1 HHsearch (proba=99.96%)
Hc1 40 lcl|NC_011344.1_cdsid_YP_002268010.1 HHsearch (proba=100.00%)
Ne1 41 lcl|NC_011344.1_cdsid_YP_002268011.1 HHsearch (proba=100.00%)
Tc1 42 lcl|NC_011344.1_cdsid_YP_002268012.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:9361
protein:vir:96978
protein:vir:94424
phi 12
42e
47
100 %
100 %
100 %
Portal protein:vir:94426
protein:vir:93943
protein:vir:2683
47
3A
phiSLT
100 %
100 %
100 %
TermL protein:vir:78630
protein:vir:94427
protein:vir:93883
tp310-2
47
3A
100 %
100 %
100 %
MTP protein:vir:78634
protein:vir:96971
protein:vir:94417
tp310-2
42e
47
100 %
100 %
100 %
Ad1 protein:vir:78636
protein:vir:96976
protein:vir:94422
tp310-2
42e
47
100 %
100 %
100 %
Hc1 protein:vir:78645
protein:vir:96974
protein:vir:94420
tp310-2
42e
47
97 %
97 %
97 %
Ne1 protein:vir:78644
protein:vir:96973
protein:vir:94419
tp310-2
42e
47
100 %
100 %
100 %
Tc1 protein:vir:78648
protein:vir:96972
protein:vir:9364
tp310-2
42e
phi 12
100 %
100 %
100 %