Virfam_CNT_anal:NC

Results of the Virfam Analysis

on the Neck Module and part of the Head and Tail Proteins

Name of the query : Phage Name : RSB1 | Genbank acc : NC_011201

Category to which the Query Phage was assigned : Podoviridae of Type3 (Read more about that Type)

Graphical Summary of the Superfamilies Detected (Help on Superfamily names):

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Number of sequences analyzed : 47

Classification of the Query Phage with respect to other related Phages in Aclame (Query Phage in text box with red border and white background):

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Table of the Head-Neck-Tail Proteins Detected :

Protein Superfamily	Index in Query Genome	Sequence Header	Detection Method
MCP	32	lcl\|NC_011201.1_cdsid_YP_002213721.1	HHsearch (proba=100.00%)
Portal	30	lcl\|NC_011201.1_cdsid_YP_002213719.1	HHsearch (proba=100.00%)
TermL	41	lcl\|NC_011201.1_cdsid_YP_002213730.1	Blast (e-value=1e-128)
MTP	NOT FOUND
Sheath	NOT FOUND
Ad1	NOT FOUND
Hc1	NOT FOUND
Ne1	NOT FOUND
Tc1	NOT FOUND
Ad2	NOT FOUND
Hc2	NOT FOUND
Tc2	NOT FOUND
Ad3	33	lcl\|NC_011201.1_cdsid_YP_002213722.1	HHsearch (proba=100.00%)
Hc3	34	lcl\|NC_011201.1_cdsid_YP_002213723.1	HHsearch (proba=100.00%)
Ad4	NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.

This page has some unexpected intergene distance(s) with respect to those observed in Reference Phages from Aclame (Obs_InterGeneDist > Mean_InterGeneDist+2*Std_Dev) (Help):

No unsual intergene distance were detected.

Highest Identities of Proteins of the Query Phage with at least 3 Proteins in Aclame Phages :

Protein Superfamily	Corresponding Protein in Aclame	Aclame Phage	Seq. Identity (%)
MCP	protein:vir:103323 protein:vir:105645 protein:vir:97031	Era103 K1E K1-5	28 % 27 % 27 %
Portal	protein:vir:10447 protein:vir:2198 protein:vir:80211	phiA1122 T7 LKA1	30 % 30 % 30 %
TermL	protein:vir:103312 protein:vir:7028 protein:vir:105656	Era103 SP6 K1E	42 % 42 % 42 %
Ad3	protein:vir:1780 protein:vir:78929 protein:vir:6325	P60 LKD16 phiKMV	30 % 28 % 28 %
Hc3	protein:vir:80253 protein:vir:103341 protein:vir:6326	LKA1 Era103 phiKMV	21 % 21 % 20 %