BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|NC_011201.1_cdsid_YP_002213730.1 [gene=RSB1_gp41] [protein=TerL large terminase subunit-like protein] [protein_id=YP_002213730.1] [location=38825..40642] (605 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: Te... 450 e-128 gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: lar... 446 e-127 gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 ... 432 e-123 gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: put... 401 e-113 gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: pu... 396 e-112 gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: pu... 387 e-109 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 305 1e-84 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 299 7e-83 gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA... 290 4e-80 gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: p... 289 6e-80 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 282 7e-78 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 282 8e-78 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 279 6e-77 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 279 9e-77 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 276 5e-76 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 273 4e-75 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 251 2e-68 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 53 1e-08 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 52 3e-08 gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hyp... 51 4e-08 gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unkn... 40 9e-05 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 36 0.001 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 36 0.001 gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hy... 35 0.002 gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: pu... 34 0.004 gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hyp... 34 0.004 gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: g... 33 0.010 gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfW... 32 0.027 gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: ph... 30 0.072 gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: te... 30 0.076 gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: g... 30 0.085 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 30 0.091 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 30 0.12 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 29 0.14 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 28 0.21 gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: te... 27 0.61 gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 26 1.2 gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: ... 26 1.4 gi|108|lcl|protein:vir:1985 Length: 551 # NCBI annotation: putat... 25 2.8 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 24 4.9 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 24 4.9 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 24 6.0 gi|16791|lcl|protein:vir:2742 Length: 168 # NCBI annotation: put... 23 7.3 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 23 7.7 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 23 8.9 gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: t... 23 9.6 >gi|7495|lcl|protein:vir:103312 Length: 624 # NCBI annotation: TerL large terminase subunit-like protein # Family: family:all:697 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039677;genbank:gi:126000006;genbank:Ge neID:4818388 Length = 624 Score = 450 bits (1158), Expect = e-128, Method: Compositional matrix adjust. Identities = 254/596 (42%), Positives = 354/596 (59%), Gaps = 28/596 (4%) Query: 4 RESPELALKRWDMLDMVRSAYPV----FKPFLHDVMTEL---GFDTTEIQVDIAEFLEYG 56 RES + AL+RW++L ++ A+P F V+ L IQ DI F+ G Sbjct: 5 RESIQAALERWELLSQLQEAFPNTVEGLLEFAEVVIHNLIPGNPHLNRIQADILRFMFTG 64 Query: 57 PHYLMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDE 116 Y M++AQRGQAKTTI A YAV+ +IH P R++I S +A EI+ +++I +D Sbjct: 65 KKYRMVEAQRGQAKTTIAAIYAVFCIIHRPHFRILISSQTSKRAEEIAGWVIKIFRGLDI 124 Query: 117 LACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAK 176 L + PD +GD++S+ F++H++L+G SPSVAC+ I +MQG RADL+IADDVES + Sbjct: 125 LEFMMPDIYSGDKASIRGFEIHYTLRGSGASPSVACYSIEGSMQGARADLIIADDVESLQ 184 Query: 177 NSLTEHQRDQLLSLTRDFPSICSVGRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTE 236 NS T R +L T++F SI G I+YLGTPQS NSIYN LP RGY +RIWPGRYPT Sbjct: 185 NSATAAGRVKLEEATKEFESINQTGDILYLGTPQSINSIYNNLPSRGYQLRIWPGRYPTV 244 Query: 237 KQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPS 296 +Q +YGD LAP+I MEA+P L GGG+ QGQPT E+ ++ L +KE QG + Sbjct: 245 EQQVSYGDFLAPLIIEDMEANPELRRGGGITRLQGQPTCPEM--YNDEALIEKEISQGTA 302 Query: 297 YFQLQHMLNTTLSDATRFPLKLRRIM--SMRVTDTLILPLTVTPGLLDQHLIRYEANSRT 354 FQLQ MLNT LSD+ RFPLKL IM + V +PL T + + + N T Sbjct: 303 KFQLQFMLNTRLSDSERFPLKLSSIMFGNFGVDKVPEMPLHSTDSINEIKEAQRPGNKST 362 Query: 355 --YWMSTPSNLSEDRARVQGVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPGG 412 ++ P A + +MY+DPAGGGQNGDET A+V L ++V +C GV GG Sbjct: 363 DRFYRMAPRPYEWKPATRR--IMYIDPAGGGQNGDETGVAIVFLLGTYIYVYKCFGVKGG 420 Query: 413 YSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALEE 472 Y + E + A + VEKN G+GA+ A P E C L+E Sbjct: 421 YEDADLEQIVMAAKEANCKEVFVEKNFGHGAFQAIIKPFF----------ERLHPCELQE 470 Query: 473 VWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITR 532 + GQKE+RIID LEP+++ L+FN +I ++ ++Q+Y + SYSL +QIA+ITR Sbjct: 471 DYATGQKEERIIDTLEPLLSAHRLVFNTEIIFEDNKAIQKYALEKQASYSLFHQIANITR 530 Query: 533 DKNALTHDDRVDALAGAVRHWVQVIGQNQ--EKAVENLRK-REFEEWVKNPKGKRA 585 DK +L HDDR+DAL GAVR I ++ +++ E + + R++ + +P +RA Sbjct: 531 DKGSLRHDDRIDALYGAVRQLTTDIDYDEMAKQSREQMEQARDYIAMMNDPSQRRA 586 >gi|15201|lcl|protein:vir:7028 Length: 631 # NCBI annotation: large terminase subunit # Family: family:all:697 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853601;genbank:gi:31711683;genbank:GeneID :1481809 Length = 631 Score = 446 bits (1148), Expect = e-127, Method: Compositional matrix adjust. Identities = 251/586 (42%), Positives = 352/586 (60%), Gaps = 25/586 (4%) Query: 4 RESPELALKRWDMLDMVRSAYPV----FKPFLHDVMTEL---GFDTTEIQVDIAEFLEYG 56 RES AL RW+ L ++ +P F V+ L D +Q DI +FL G Sbjct: 5 RESQAEALARWEALHELQQTFPYTVAGLLSFAQVVINNLITGNPDLNRVQADILKFLFGG 64 Query: 57 PHYLMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDE 116 Y M++AQRGQAKTTI A YAV+ +IH P R++IVS +A EI+ +++I +D Sbjct: 65 NKYRMVEAQRGQAKTTIAAIYAVFRIIHEPHKRIMIVSQTAKRAEEIAGWVIKIFRGLDF 124 Query: 117 LACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAK 176 L + PD AGD++S++ F++H++L+G DKSPSVAC+ I A MQG RAD+++ADDVES + Sbjct: 125 LEFMLPDIYAGDKASIKGFEIHYTLRGSDKSPSVACYSIEAGMQGARADIILADDVESLQ 184 Query: 177 NSLTEHQRDQLLSLTRDFPSICSVGRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTE 236 NS T R L LT++F SI G I+YLGTPQS NSIYN LP RGY +RIWPGRYPT Sbjct: 185 NSRTAAGRALLEDLTKEFESINQFGDIIYLGTPQSVNSIYNNLPARGYQIRIWPGRYPTL 244 Query: 237 KQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPS 296 +Q A YGD LAP+IR+ M DPSL +G G+ QG PT E+ ++ L +KE QG + Sbjct: 245 EQEACYGDFLAPMIRQDMIDDPSLRSGYGIDGTQGAPTCPEM--YDDEKLIEKEISQGTA 302 Query: 297 YFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPLTVTPGLLDQHLI----RYEANS 352 FQLQ MLNT L DA R+PL+L +++ M T ++P T +LI R+ N Sbjct: 303 KFQLQFMLNTRLMDADRYPLRLNQLILMSF-GTDVVPEMPTWSNDSVNLISDAPRF-GNK 360 Query: 353 RTYWMSTPSNLSEDRARVQGVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPGG 412 T ++ P + +Q +MY+DPAGGG+NGDET A+V L ++V + GVPGG Sbjct: 361 PTDYLYRPVPRPYEWRPIQRRLMYIDPAGGGKNGDETGVAIVFLLGTFIYVYKVFGVPGG 420 Query: 413 YSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALEE 472 YS S + A + V + +EKN G+GA+ A P + + A L+E Sbjct: 421 YSESALSRIVREAKQAEVKEVFIEKNFGHGAFEAVIKPYFEREWPAE----------LKE 470 Query: 473 VWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITR 532 + GQKE RII+ LEP+++ +IFN ++ + + S+Q YP R SYSL Q+++IT Sbjct: 471 DYATGQKEARIIETLEPLMSAHRIIFNAEMIKQDIDSVQHYPLEVRMSYSLFAQMSNITL 530 Query: 533 DKNALTHDDRVDALAGAVRHWVQVIGQNQEKAVENLRKREFEEWVK 578 +K L HDDR+DAL GA+R I ++ + LR +E E+++ Sbjct: 531 EKGCLRHDDRLDALYGAIRQLTSQIDYDEANRINRLRAKEMREYLE 576 >gi|8927|lcl|protein:vir:97005 Length: 632 # NCBI annotation: 40 # Family: family:all:697 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654141;genbank:gi:108862025;genbank:GeneI D:5075954 Length = 632 Score = 432 bits (1111), Expect = e-123, Method: Compositional matrix adjust. Identities = 241/594 (40%), Positives = 349/594 (58%), Gaps = 24/594 (4%) Query: 4 RESPELALKRWDMLDMVRSAYPVFKP----FLHDVMTEL---GFDTTEIQVDIAEFLEYG 56 RES AL RW+ML ++ +P F V+ L +Q DI +FL YG Sbjct: 5 RESQAEALARWEMLQELQQTFPYTAEGLLLFADTVIHNLIAGNPHLIRMQADILKFLFYG 64 Query: 57 PHYLMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDE 116 Y +I+A RG AKTT++A Y V+ +IH P R+++VS +A EI+ +V+I +D Sbjct: 65 HKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGLDF 124 Query: 117 LACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAK 176 L + PD AGDR+SV++F++H++L+G DKSPSV+C+ I A MQG RAD+++ADDVES + Sbjct: 125 LEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDVESMQ 184 Query: 177 NSLTEHQRDQLLSLTRDFPSICSVGRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTE 236 N+ T R L LT++F SI G I+YLGTPQ+ NSIYN LP RGY VRIW RYP+ Sbjct: 185 NARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARGYSVRIWTARYPSV 244 Query: 237 KQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPS 296 +Q YGD LAP+I + M+ +P+L +G GL + G P E+ +++L +KE QG + Sbjct: 245 EQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEM--YDDEVLIEKEISQGAA 302 Query: 297 YFQLQHMLNTTLSDATRFPLKLRRIM--SMRVTDTLILPLTVTPGLLDQHLIRYEANSRT 354 FQLQ MLNT + DA R+PL+L ++ S + ++P + N T Sbjct: 303 KFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINIIGDAPKYGNKPT 362 Query: 355 YWMSTPSNLSEDRARVQGVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPGGYS 414 +M P + V +MY+DPAGGG+NGDET A+V ++V +C GVPGGY Sbjct: 363 DFMYRPVARPYEWGAVSRKIMYIDPAGGGKNGDETGVAIVFLHGTFIYVYQCFGVPGGYR 422 Query: 415 VSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALEEVW 474 S + + A + V + +EKN G+GA+ A P + + T LEE + Sbjct: 423 ESSLNRIVQAAKQAGVKEVFIEKNFGHGAFEAVIKPYFEREWPVT----------LEEDY 472 Query: 475 EAGQKEKRIIDVLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITRDK 534 GQKE RII+ LEP++A LIFN ++ +++ S+Q YP R SYSL NQ+++IT +K Sbjct: 473 ATGQKELRIIETLEPLMAAHRLIFNAEMVKSDFESVQHYPLELRMSYSLFNQMSNITIEK 532 Query: 535 NALTHDDRVDALAGAVRHWVQVIGQNQEKAVENLRKREFEEWV---KNPKGKRA 585 N+L HDDR+DAL GA+R I ++ + LR +E +++ P +RA Sbjct: 533 NSLRHDDRLDALYGAIRQLTSQIDYDEVTRINRLRAQEMRDYIHAMNTPHLRRA 586 >gi|18767|lcl|protein:vir:6335 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877482;genbank:gi:33300854;uniprot:Q7Y2C2 ;genbank:GeneID:1482617 Length = 601 Score = 401 bits (1030), Expect = e-113, Method: Compositional matrix adjust. Identities = 236/583 (40%), Positives = 342/583 (58%), Gaps = 23/583 (3%) Query: 12 KRWDMLDMVRSAYPVFKPFLHDVMTELGFDTTEIQVDIAEFLEYGPHYLMIQAQRGQAKT 71 +R+ + VR YP F+ F D M LGF T +Q+DIA+F++ P+ M+ AQRG+AK+ Sbjct: 5 ERFQIAHEVRDMYPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKS 64 Query: 72 TITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELACLRPDRNAGDRSS 131 TI Y VW + NP R ++VS G +A E LI ++IM D LA LRP+ GDR+S Sbjct: 65 TIACIYVVWCITQNPATRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTS 124 Query: 132 VESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLT 191 SFDV+ +LKG++KS S+ C GITA +QG RAD+LI DD+E+ KN LT +R +L + Sbjct: 125 ATSFDVNWALKGVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQS 184 Query: 192 RDFPSICSVGRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTEKQLANYGDMLAPIIR 251 ++F SIC+ G+I+YLGTPQS SIYN LP RG+ +RIWPGR+PT + A YGD LAP I Sbjct: 185 QEFTSICTHGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQARYGDWLAPSIL 244 Query: 252 RRM----EADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPSYFQLQHMLNTT 307 R+ E + TG GL +G D + ED+L KE DQGP FQLQ+ML+T+ Sbjct: 245 ARIARLEEKGHNPRTGKGLDGTRGWAADPQR-YNEEDLLD-KELDQGPEGFQLQYMLDTS 302 Query: 308 LSDATRFPLKLRRIMSMRVTDTLILPLTVTPGLLDQHLIRYEANSRTYW---MSTPSNLS 364 L+D R LKLR ++ + T + P V ++ ++++A+ + P+ ++ Sbjct: 303 LADEQRMQLKLRDLLFIDATHESV-PEQVAWAADERFKLKFDAHRFPVIKPELYLPALMA 361 Query: 365 EDRARVQGVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEV 424 A +Q + M+VDPAG G GDE +YA+ L + V+ G GG++ E + Sbjct: 362 GGWAPLQQMTMFVDPAGDG--GDELSYALGGTLGPYIHVVSIGGWKGGFAEENLEKCIAL 419 Query: 425 AARWRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSG-----GCALEEVWEAGQK 479 AAR+ V I VEKN+G GA + +++ I +G G +E+ ++GQK Sbjct: 420 AARYGVKVIYVEKNLGAGAVGQLFRNHMRS------IDPDTGKLRYEGIGVEDRQKSGQK 473 Query: 480 EKRIIDVLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITRDKNALTH 539 E+RIID L P++ R LIF+ ++ S Q+YPA R S+ +QI +IT D+ +L Sbjct: 474 ERRIIDTLRPIMQRHRLIFHVSAMDSDHVSCQQYPADKRNERSVFHQIHNITTDRGSLPK 533 Query: 540 DDRVDALAGAVRHWVQVIGQNQEKAVENLRKREFEEWVKNPKG 582 DDR+DAL G VR + ++ E A + +EW+ NP G Sbjct: 534 DDRIDALEGLVRELAPTLVKDDEAATRAREEAAKKEWLNNPMG 576 >gi|11728|lcl|protein:vir:78939 Length: 601 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522835;genbank:gi:158345070;genbank:Ge neID:5687429 Length = 601 Score = 396 bits (1018), Expect = e-112, Method: Compositional matrix adjust. Identities = 233/583 (39%), Positives = 342/583 (58%), Gaps = 23/583 (3%) Query: 12 KRWDMLDMVRSAYPVFKPFLHDVMTELGFDTTEIQVDIAEFLEYGPHYLMIQAQRGQAKT 71 +R+ + V YP F+ F D M LGF T +Q+DIA+F++ P+ M+ AQRG+AK+ Sbjct: 5 ERFQIAHEVMDMYPRFRDFCLDAMLFLGFKMTWMQLDIADFMQDSPNKAMVAAQRGEAKS 64 Query: 72 TITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELACLRPDRNAGDRSS 131 TI Y VW ++ +PR R ++VS G +A E LI ++IM D LA LRP+ GDR+S Sbjct: 65 TIACIYVVWCIVRDPRTRAMLVSGSGDKAEENGQLITKLIMHWDLLAYLRPEARMGDRTS 124 Query: 132 VESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLT 191 SFDV+ +LKG++KS S+ C GITA +QG RAD+LI DD+E+ KN LT +R +L + Sbjct: 125 ATSFDVNWALKGVEKSASINCIGITAALQGYRADILIPDDIETTKNGLTATERAKLTRQS 184 Query: 192 RDFPSICSVGRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTEKQLANYGDMLAPIIR 251 ++F SIC+ G+I+YLGTPQS SIYN LP RG+ +RIWPGR+PT + YGD LAP I Sbjct: 185 QEFTSICTHGKILYLGTPQSRESIYNGLPARGFLMRIWPGRFPTLDEQERYGDWLAPSIL 244 Query: 252 RRM----EADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPSYFQLQHMLNTT 307 R+ E + TG GL +G D + ED++ KE DQG FQLQ+ML+T+ Sbjct: 245 ERIARLEERGHNPRTGKGLDGTRGWAADPQR-YNEEDLID-KELDQGAEGFQLQYMLDTS 302 Query: 308 LSDATRFPLKLRRIMSMRVTDTLILPLTVTPGLLDQHLIRYEANSRTYW---MSTPSNLS 364 L+D R LKLR ++ + T + P V ++ ++++A+ + P+ ++ Sbjct: 303 LADEQRMQLKLRDLLFIDATHESV-PEQVAWAADERFKLKFDAHRFPIIKPELYLPALMA 361 Query: 365 EDRARVQGVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEV 424 A +Q + M+VDPAG G GDE +YAV L + V+ G GG++ E + Sbjct: 362 GGWAPLQQMTMFVDPAGDG--GDELSYAVGGTLGPYIHVVSIGGWKGGFAEENLEKCIAL 419 Query: 425 AARWRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSG-----GCALEEVWEAGQK 479 AAR+ V I VEKN+G GA + +++ I +G G +E+ ++GQK Sbjct: 420 AARYGVKVIYVEKNLGAGAVGQLFRNYMRS------INPDTGKPRYEGIGIEDRQKSGQK 473 Query: 480 EKRIIDVLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITRDKNALTH 539 E+RIID L P++ R LIF+ ++ + Q+YPA RT S+ +QI +IT D+ +L Sbjct: 474 ERRIIDTLRPIMQRHRLIFHVSAMDSDYVACQQYPADKRTERSVFHQIHNITTDRGSLPK 533 Query: 540 DDRVDALAGAVRHWVQVIGQNQEKAVENLRKREFEEWVKNPKG 582 DDR+DAL G VR + ++ E A + +EW+ NP G Sbjct: 534 DDRIDALEGLVRELTPSLVKDDEAATRAREEAAKKEWLNNPMG 576 >gi|12767|lcl|protein:vir:80218 Length: 595 # NCBI annotation: putative DNA maturase B # Family: family:all:697 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522892;genbank:gi:158345185;genbank:Ge neID:5687481 Length = 595 Score = 387 bits (993), Expect = e-109, Method: Compositional matrix adjust. Identities = 232/593 (39%), Positives = 340/593 (57%), Gaps = 20/593 (3%) Query: 12 KRWDMLDMVRSAYPVFKPFLHDVMTELGFDTTEIQVDIAEFLEYGPHYLMIQAQRGQAKT 71 +R++ +VR YP F F D M LG+ T +Q DIAEF++YGP M+ AQRG+AK+ Sbjct: 5 ERFERAQLVREMYPEFVDFCRDAMEYLGYSMTWMQEDIAEFMQYGPQRSMVAAQRGEAKS 64 Query: 72 TITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELACLRPDRNAGDRSS 131 TI + +W+L+ +P +RVV+VS +A E L+ +I L L PD+ AGDR+S Sbjct: 65 TIACLFGLWNLVQDPTHRVVLVSGAQDKAEENGKLMHGLIHNWPLLQYLAPDKYAGDRTS 124 Query: 132 VESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLT 191 V FDVH SLKG+DKS SV C GIT+++QG R DLLI DD+E+ KN LT +R +L++L+ Sbjct: 125 VLEFDVHWSLKGVDKSASVNCLGITSSLQGYRGDLLIPDDIETTKNGLTATERAKLITLS 184 Query: 192 RDFPSICS--VGRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTEKQLANYGDMLAPI 249 ++F SI + GRI+YLGTPQ+ SIYNTLPGRG+ VR+WPGR+P +L YGD LAP Sbjct: 185 KEFTSIVADRNGRILYLGTPQTRESIYNTLPGRGFTVRVWPGRFPKASELPKYGDALAPS 244 Query: 250 IRRRME-ADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPSYFQLQHMLNTTL 308 I RM TG GL +G TD E + E+ L KE DQGP F+LQ MLNT+L Sbjct: 245 ILERMALLGDRCQTGRGLDGTRGWSTDPERYS--EEELCDKELDQGPETFELQFMLNTSL 302 Query: 309 SDATRFPLKLRRIMSMRVTDTLILPLTVTPGLLDQHLIRY--EANSRTYWMSTPSNLSED 366 SDA R LKLR ++ + + P +V + I E ++ M P+++ E Sbjct: 303 SDAARQQLKLRDLIVADFSHEQV-PESVFWAADPRFKIDLPQEFPVQSVEMFRPASVHEH 361 Query: 367 RARVQGVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAA 426 A+++ + +++DPAG G GDE A+A+ + + V+ G GG S + L ++ Sbjct: 362 FAQIKSMTLFLDPAGNG--GDELAFAIGGAVGPYIHVVAWGGFKGGVSEDNLDKLVQLCK 419 Query: 427 RWRVNRIMVEKNMGNGAYLAA----WMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKR 482 + V ++VEKNMG G ++ I G Q G ++E + GQKE R Sbjct: 420 DFGVKVVLVEKNMGAGTVTQLVRNHFLGIGPDGKQRL------AGVGVDERHKTGQKELR 473 Query: 483 IIDVLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDR 542 II+ + PV+ + L+ + + L++YP HR S L Q+ +IT D+ +LT DDR Sbjct: 474 IINTIRPVMQKHRLVLHRSAVEMDLELLKQYPLQHRDVRSGLYQMHNITSDRGSLTKDDR 533 Query: 543 VDALAGAVRHWVQVIGQNQEKAVENLRKREFEEWVKNPKGKRATSARGPQAGN 595 +DAL G V + + ++ K + +E+++NP G R ++G+ Sbjct: 534 LDALEGLVAELMGFLVIDEVKEQQRRDAAVVQEFLRNPMGTGPGVGRPLKSGH 586 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 305 bits (781), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 204/562 (36%), Positives = 292/562 (51%), Gaps = 68/562 (12%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T Q+D+A+ L G + ++QA RG K+ IT A+ VW L +NP + +IVSA +A+ Sbjct: 26 TRCQIDMAKKLSAGDNRRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERAD 85 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I RII M +L L+P + G R +V SFDV + D SPSV GIT + G Sbjct: 86 ANSIFIKRIIDLMPQLKELKPKQ--GQRDAVISFDVGPAKP--DHSPSVKSVGITGQLTG 141 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICSVG-RIVYLGTPQSTNSIYNTLP 220 RAD+LIADDVE NS T+ RD+L L ++F +I G I+YLGTPQ+ ++Y L Sbjct: 142 SRADILIADDVEVPNNSATQAARDRLSELVKEFDAILKPGGTIIYLGTPQNEMTLYRELE 201 Query: 221 GRGYCVRIWPGRYPTE-KQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDLELP 279 GRGY IWP RYP + K +YGD LAP+++ +E DP +PTD E+ Sbjct: 202 GRGYTTTIWPARYPRDRKDWQSYGDRLAPMLQAELEEDPESFYW--------RPTD-EVR 252 Query: 280 AGREDMLQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPLTVTPG 339 D L+++E G + F LQ MLN LSDA ++PLKLR ++ + D P+ Sbjct: 253 FDDTD-LKERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDLIVADL-DPASSPMVYQ-- 308 Query: 340 LLDQHLIRYEANSRTYWMSTPSNLSEDRARV----------QGV----------VMYVDP 379 W+ P N ED V Q V ++ +DP Sbjct: 309 ----------------WLPNPQNKREDVPNVGLMGDSYHTYQTVGSAFSSYTQKILVIDP 352 Query: 380 AGGGQNGDETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNM 439 +G G+ DET YAV+ LNG ++ +E G+ GGY S E L ++ +W+VN ++E N Sbjct: 353 SGRGK--DETGYAVLYQLNGYIFAMEVGGMRGGYEDSTLEALAKIGRKWKVNEYVIEGNF 410 Query: 440 GNGAYLAAWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFN 499 G+G YL + P+ + A A+ EV GQKE RI DVLEP++ LI N Sbjct: 411 GDGMYLELFKPVAARIHPA----------AVTEVKSKGQKELRICDVLEPIMGSHRLIVN 460 Query: 500 DDIPRNEDASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRHWVQVIGQ 559 + S YSL Q+ I+R++ AL HDDR+DALA V+ +V+ + + Sbjct: 461 AAAIVQDYQSASDKDGVRNPIYSLFYQMTRISRERGALAHDDRLDALAIGVQFFVESMAK 520 Query: 560 NQEKAVENLRKREFEEWVKNPK 581 + K + + EE ++NP+ Sbjct: 521 DANKGEREVTEEWLEEQMENPR 542 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 299 bits (765), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 199/554 (35%), Positives = 290/554 (52%), Gaps = 42/554 (7%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T Q D+A L G ++QA RG K+ IT A+ VW L +NP+ + +IVSA +A+ Sbjct: 36 TRCQKDMARKLAAGDERRFILQAFRGIGKSFITCAFVVWKLWNNPQLKFMIVSASKERAD 95 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I RII + L L+P R SV SFDV L D SPSV GIT + G Sbjct: 96 ANSIFIKRIIDLLPFLHELKP--RPEQRDSVISFDV--GLAKPDHSPSVKSVGITGQLTG 151 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICSV-GRIVYLGTPQSTNSIYNTLP 220 RAD+LIADDVE NS T+ RD+L L ++F +I G I+YLGTPQ ++Y L Sbjct: 152 SRADILIADDVEVPNNSATQAARDRLGELVKEFDAILKPNGTIIYLGTPQCEMTLYRELE 211 Query: 221 GRGYCVRIWPGRYPTE-KQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDLELP 279 RGY IWP RYP + L YG+ LAP+++ + +P QPTD P Sbjct: 212 NRGYKTTIWPARYPKDMNDLETYGNRLAPMLKDELMENPEAY--------WWQPTD---P 260 Query: 280 AGREDM-LQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPLTV-- 336 +D L+++E G + F LQ MLN LSDA ++PLKLR + + + PLT Sbjct: 261 VRFDDEDLRERELSYGKAGFALQFMLNPNLSDAEKYPLKLRDFI-VAALEVDKAPLTYGW 319 Query: 337 --TPGLLDQHLIRYEANSRTYWMSTPSNLSEDRARVQGVVMYVDPAGGGQNGDETAYAVV 394 P L Q++ + TY ++ + +A +M +DP+G G+ DET Y V+ Sbjct: 320 LPNPQNLLQNVPQVGLKGDTYHRYDVAD--KRQASYTSKIMAIDPSGRGK--DETGYCVL 375 Query: 395 AHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAAWMPILKA 454 LNG ++++E G GGY S E L +VA RW VN ++ E N G+G +L + P+L Sbjct: 376 YFLNGYIYLMETGGFRGGYEDSTLEALAKVAKRWNVNEVLCEGNFGDGMFLKIFSPVLNR 435 Query: 455 GYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNEDASLQRYP 514 ++ CAL E GQKE RI D LEPV+ ++ + + + + + Sbjct: 436 VHR----------CALTETKSTGQKEMRIADTLEPVMGAHRIVVMESAIQKDYQTARNVD 485 Query: 515 AAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRHWVQVIGQNQEKAVENLRKREFE 574 H YS+ Q+ +TR++ AL HDDR+DA A V ++V+++ ++ + ++ Sbjct: 486 GTHDIKYSMFYQLTRLTRERGALAHDDRLDAFAIGVAYFVEMLEKDSQAGADDTTA---- 541 Query: 575 EWVKNPKGKRATSA 588 EW++ GK A A Sbjct: 542 EWLEEMLGKDALQA 555 >gi|14546|lcl|protein:vir:8897 Length: 582 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813786;genbank:gi:29366741;genbank:GeneID :1258833 Length = 582 Score = 290 bits (742), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 199/549 (36%), Positives = 284/549 (51%), Gaps = 56/549 (10%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T+ Q+D+A+ L G ++QA RG K+ IT A+ VW L +NP + +IVSA +A+ Sbjct: 35 TKCQIDMAKKLSAGDERRFILQAFRGIGKSFITCAFVVWKLWNNPDLKFMIVSASKERAD 94 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I RII + L L+P G R S +FDV + D SPSV GIT + G Sbjct: 95 ANSVFIKRIIDLLPFLHELKP--GPGQRDSSLAFDVGPAKP--DHSPSVKSVGITGQLTG 150 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICSVG-RIVYLGTPQSTNSIYNTLP 220 RAD+LIADDVE NS T+ RD L L ++F +I G I+YLGTPQ+ ++Y L Sbjct: 151 SRADILIADDVEVPNNSATQTARDHLGELVKEFDAILKPGGTIIYLGTPQTEMTLYRELE 210 Query: 221 GRGYCVRIWPGRYPTEK-QLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDLELP 279 GRGY IWP RYP ++ +YG LAP++ ++AD SL PTD E+ Sbjct: 211 GRGYVTTIWPARYPKDQADWDSYGPRLAPMLAAELQADGSLFWA---------PTD-EVR 260 Query: 280 AGREDMLQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRR-IMSMRVTDTLILPLTVTP 338 +D L+++E G F LQ MLN LSD ++PLKLR I+ D L P Sbjct: 261 FDDKD-LRERELSYGKGGFALQFMLNPNLSDMEKYPLKLRDFIVGTFAQDKGPTTLIWMP 319 Query: 339 ------------GLLDQHLIRYEANSRTYWMSTPSNLSEDRARVQGVVMYVDPAGGGQNG 386 GL RYE+ + + A ++ +DP+G G+ Sbjct: 320 NAANECKGVPVVGLKGDRFHRYES------------VGQATASYAQKILVIDPSGRGK-- 365 Query: 387 DETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLA 446 DET YAV+ LNG +++++ G GGY + + L +A +VN I+VE N G+G Y+ Sbjct: 366 DETGYAVLYQLNGYIFLMDAGGFRGGYEDTVLQALANIAKIHKVNEIVVEGNFGDGMYIK 425 Query: 447 AWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNE 506 P++ A + CA+ EV GQKE RI DVLEPV+ L+ + + + Sbjct: 426 LLAPVVTATFP----------CAITEVKSKGQKELRICDVLEPVLGSHKLVIQESLIEKD 475 Query: 507 DASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRHWVQVIGQNQEKAVE 566 + TSYSLL Q+ ITR++ +L HDDR+DALA V+ + + + + K E Sbjct: 476 YRTALNADGTTDTSYSLLYQLTRITRERGSLAHDDRLDALAIGVQFFTEAL-ERDSKVGE 534 Query: 567 NLRKREFEE 575 + +EF E Sbjct: 535 SEMLQEFLE 543 >gi|10294|lcl|protein:vir:105656 Length: 405 # NCBI annotation: putative large terminase subunit # Family: family:all:697 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425018;genbank:gi:83571766;uniprot:Q2WC34 ;genbank:GeneID:3837297 Length = 405 Score = 289 bits (740), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 162/387 (41%), Positives = 230/387 (59%), Gaps = 11/387 (2%) Query: 4 RESPELALKRWDMLDMVRSAYPVFKP----FLHDVMTEL---GFDTTEIQVDIAEFLEYG 56 RES AL RW+ML ++ +P F V+ L +Q DI +FL YG Sbjct: 5 RESQAEALARWEMLQELQQTFPYTAEGLLLFADTVIHNLIAGNPHLIRMQADILKFLFYG 64 Query: 57 PHYLMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDE 116 Y +I+A RG AKTT++A Y V+ +IH P R+++VS +A EI+ +V+I +D Sbjct: 65 HKYRLIEAPRGIAKTTLSAIYTVFRIIHEPHKRIMVVSQNAKRAEEIAGWVVKIFRGLDF 124 Query: 117 LACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAK 176 L + PD AGDR+SV++F++H++L+G DKSPSV+C+ I A MQG RAD+++ADDVES + Sbjct: 125 LEFMLPDIYAGDRASVKAFEIHYTLRGSDKSPSVSCYSIEAGMQGARADIILADDVESMQ 184 Query: 177 NSLTEHQRDQLLSLTRDFPSICSVGRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTE 236 N+ T R L LT++F SI G I+YLGTPQ+ NSIYN LP RGY VRIW RYP+ Sbjct: 185 NARTAAGRALLEELTKEFESINQFGDIIYLGTPQNVNSIYNNLPARGYSVRIWTARYPSV 244 Query: 237 KQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPS 296 +Q YGD LAP+I + M+ +P+L +G GL + G P E+ +D+L +KE QG + Sbjct: 245 EQEQCYGDFLAPMIVQDMKDNPALRSGYGLDGNSGAPCAPEM--YDDDVLIEKEISQGAA 302 Query: 297 YFQLQHMLNTTLSDATRFPLKLRRIM--SMRVTDTLILPLTVTPGLLDQHLIRYEANSRT 354 FQLQ MLNT + DA R+PL+L ++ S + ++P + N T Sbjct: 303 KFQLQFMLNTRMMDADRYPLRLNNLIFTSFGTEEVPVMPTWSNDSINIIGDAPKYGNKPT 362 Query: 355 YWMSTPSNLSEDRARVQGVVMYVDPAG 381 +M P + V +MY+DPAG Sbjct: 363 DFMYRPVARPYEWGAVTRKIMYIDPAG 389 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 282 bits (722), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 189/555 (34%), Positives = 290/555 (52%), Gaps = 53/555 (9%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T+ Q+D+A+ L G + ++QA RG K+ IT A+ VW+L +P+ +++IVSA +A+ Sbjct: 36 TKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERAD 95 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I II + LA L+P G R SV SFDV + D SPSV GIT + G Sbjct: 96 ANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPAKP--DHSPSVKSVGITGQLTG 151 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICS---VGRIVYLGTPQSTNSIYNT 218 RAD++IADDVE NS T+ R++L +L ++F ++ R++YLGTPQ+ ++Y Sbjct: 152 SRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKE 211 Query: 219 LP-GRGYCVRIWPGRYP-TEKQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDL 276 L RGY IWP YP + ++ YG+ LAP++R G M QGQPTD Sbjct: 212 LEDNRGYTTIIWPALYPRSREEDLYYGERLAPMLREEF--------NDGFEMLQGQPTD- 262 Query: 277 ELPAGREDM--LQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPL 334 P R DM L+++E + G + F LQ MLN LSDA ++PL+LR D ++ L Sbjct: 263 --PV-RFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLR--------DAIVCGL 311 Query: 335 TVTPGLLDQHLIRYEANSRTYW---------MSTPSNLSEDRARVQGVVMYVDPAGGGQN 385 + + N + + + S++ + Q ++ +DP+G G+ Sbjct: 312 DFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPSGRGK- 370 Query: 386 GDETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYL 445 DET YAV+ LNG ++++E G GYS E L + A +W+V ++ E N G+G + Sbjct: 371 -DETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDGMFG 429 Query: 446 AAWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRN 505 + P+L + A ALEE+ G KE RI D LEPV++ L+ D++ R Sbjct: 430 KVFSPVLLKHHAA----------ALEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIRE 479 Query: 506 EDASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRHWVQVIGQNQEKAV 565 + + + H YSL Q+ + R+K A+ HDDR+DALA V + + K Sbjct: 480 DYQTARDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVE 539 Query: 566 ENLRKREFEEWVKNP 580 + + EE +++P Sbjct: 540 AEVLEAFLEEHMEHP 554 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 282 bits (722), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 189/555 (34%), Positives = 289/555 (52%), Gaps = 53/555 (9%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T+ Q+D+A L G + ++QA RG K+ IT A+ VW+L +P+ +++IVSA +A+ Sbjct: 37 TKCQIDMARCLANGDNKKFILQAFRGIGKSFITCAFVVWTLWRDPQLKILIVSASKERAD 96 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I II + LA L+P G R SV SFDV + D SPSV GIT + G Sbjct: 97 ANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPAKP--DHSPSVKSVGITGQLTG 152 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICS---VGRIVYLGTPQSTNSIYNT 218 RAD++IADDVE NS T+ R++L +L ++F ++ R++YLGTPQ+ ++Y Sbjct: 153 SRADIIIADDVEIPSNSATQGAREKLWTLVQEFAALLKPLPTSRVIYLGTPQTEMTLYKE 212 Query: 219 LP-GRGYCVRIWPGRYP-TEKQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDL 276 L RGY IWP YP + ++ YGD LAP++R G M QGQPTD Sbjct: 213 LEDNRGYTTIIWPALYPRSREEDLYYGDRLAPMLREEF--------NDGFEMLQGQPTD- 263 Query: 277 ELPAGREDM--LQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPL 334 P R DM L+++E + G + F LQ MLN LSDA ++PL+LR D ++ L Sbjct: 264 --PV-RFDMEDLRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLR--------DAIVCGL 312 Query: 335 TVTPGLLDQHLIRYEANSRTYW---------MSTPSNLSEDRARVQGVVMYVDPAGGGQN 385 + + N + + + S++ + Q ++ +DP+G G+ Sbjct: 313 DFEKAPMHYQWLPNRQNRNEELPNVGLKGDDIHSYHSCSQNTGQYQQRILVIDPSGRGK- 371 Query: 386 GDETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYL 445 DET YAV+ LNG ++++E G GYS E L + A +W+V ++ E N G+G + Sbjct: 372 -DETGYAVLFTLNGYIYLMEAGGFRDGYSDKTLESLAKKAKQWKVQTVVFESNFGDGMFG 430 Query: 446 AAWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRN 505 + P+L + A A+EE+ G KE RI D LEPV++ L+ D++ R Sbjct: 431 KVFSPVLLKHHAA----------AMEEIRARGMKELRICDTLEPVLSTHRLVIRDEVIRE 480 Query: 506 EDASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRHWVQVIGQNQEKAV 565 + + + H YSL Q+ + R+K A+ HDDR+DALA V + + K Sbjct: 481 DYQTARDADGKHDVRYSLFYQLTRMAREKGAVAHDDRLDALALGVEFLRSTMELDAVKVE 540 Query: 566 ENLRKREFEEWVKNP 580 + + EE +++P Sbjct: 541 AEVLEAFLEEHMEHP 555 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 279 bits (714), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 186/525 (35%), Positives = 280/525 (53%), Gaps = 49/525 (9%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T+ Q+D+A+ L G + ++QA RG K+ IT A+ VWSL +P+ +++IVSA +A+ Sbjct: 36 TKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERAD 95 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I II + L+ L+P G R SV SFDV + D SPSV GIT + G Sbjct: 96 ANSIFIKNIIDLLPFLSELKP--RPGQRDSVISFDVGPA--NPDHSPSVKSVGITGQLTG 151 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICS---VGRIVYLGTPQSTNSIYNT 218 RAD++IADDVE NS T R++L +L ++F ++ R++YLGTPQ+ ++Y Sbjct: 152 SRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLPSSRVIYLGTPQTEMTLYKE 211 Query: 219 LP-GRGYCVRIWPGRYP-TEKQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDL 276 L RGY IWP YP T ++ Y LAP++R + +P + G PTD Sbjct: 212 LEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEYDENPEALAG--------TPTD- 262 Query: 277 ELPAGREDMLQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPLTV 336 + R+D L+++E + G + F LQ MLN LSDA ++PL+LR D ++ L + Sbjct: 263 PVRFDRDD-LRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLR--------DAIVAALDL 313 Query: 337 TPGLLD-------QHLIRYEANS--RTYWMSTPSNLSEDRARVQGVVMYVDPAGGGQNGD 387 + Q++I N + + T + S + + Q ++ +DP+G G+ D Sbjct: 314 EKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKILVIDPSGRGK--D 371 Query: 388 ETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAA 447 ET YAV+ LNG ++++E G GYS E L + A +W V ++ E N G+G + Sbjct: 372 ETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYESNFGDGMFGKV 431 Query: 448 WMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNED 507 + PIL + CA+EE+ G KE RI D LEPV+ L+ D++ R + Sbjct: 432 FSPILLKHHN----------CAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRADY 481 Query: 508 ASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRH 552 S + H YSL Q+ ITR+K AL HDDR+DALA + + Sbjct: 482 QSARDVDGKHDVKYSLFYQMTRITREKGALAHDDRLDALALGIEY 526 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 279 bits (713), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 186/525 (35%), Positives = 281/525 (53%), Gaps = 49/525 (9%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T+ Q+D+A+ L G + ++QA RG K+ IT A+ VWSL +P+ +++IVSA +A+ Sbjct: 36 TKCQIDMAKVLANGDNKKFILQAFRGIGKSFITCAFVVWSLWRDPQLKILIVSASKERAD 95 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I II + LA L+P G R SV SFDV + D SPSV GIT + G Sbjct: 96 ANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDVGPAKP--DHSPSVKSVGITGQLTG 151 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSIC---SVGRIVYLGTPQSTNSIYNT 218 RAD++IADDVE NS T R++L +L ++F ++ + R++YLGTPQ+ ++Y Sbjct: 152 SRADIIIADDVEIPSNSATMGAREKLWTLVQEFAALLKPLTSSRVIYLGTPQTEMTLYKE 211 Query: 219 LP-GRGYCVRIWPGRYP-TEKQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDL 276 L RGY IWP YP T ++ Y LAP++R + +P + G PTD Sbjct: 212 LEDNRGYTTIIWPALYPRTREENLYYSQRLAPMLRAEYDENPEALAG--------TPTD- 262 Query: 277 ELPAGREDMLQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPLTV 336 + R+D L+++E + G + F LQ MLN LSDA ++PL+LR D ++ L + Sbjct: 263 PVRFDRDD-LRERELEYGKAGFTLQFMLNPNLSDAEKYPLRLR--------DAIVAALDL 313 Query: 337 TPGLLD-------QHLIRYEANS--RTYWMSTPSNLSEDRARVQGVVMYVDPAGGGQNGD 387 + Q++I N + + T + S + + Q ++ +DP+G G+ D Sbjct: 314 EKAPMHYQWLPNRQNIIEDLPNVGLKGDDLHTYHDCSNNSGQYQQKILVIDPSGRGK--D 371 Query: 388 ETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAA 447 ET YAV+ LNG ++++E G GYS E L + A +W V ++ E N G+G + Sbjct: 372 ETGYAVLYTLNGYIYLMEAGGFRDGYSDKTLELLAKKAKQWGVQTVVYESNFGDGMFGKV 431 Query: 448 WMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNED 507 + PIL + CA+EE+ G KE RI D LEPV+ L+ D++ R + Sbjct: 432 FSPILLKHHN----------CAMEEIRARGMKEMRICDTLEPVMQTHRLVIRDEVIRADY 481 Query: 508 ASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRH 552 S + + YSL Q+ ITR+K AL HDDR+DALA + + Sbjct: 482 QSARDVDGKYDVKYSLFYQMTRITREKGALAHDDRLDALALGIEY 526 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 276 bits (706), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 182/522 (34%), Positives = 280/522 (53%), Gaps = 38/522 (7%) Query: 43 TEIQVDIAEFLEYGPHY-LMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQAN 101 T+ Q+D+A L G H ++QA RG K+ IT A+ VW L +P+ +V+IVSA +A+ Sbjct: 36 TKCQIDMARTLADGDHKKFILQAFRGIGKSFITCAFVVWVLWRDPQLKVLIVSASKERAD 95 Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 S I II + LA L+P G R SV SFDV L D SPSV GIT + G Sbjct: 96 ANSIFIKNIIDLLPFLAELKP--RPGQRDSVISFDV--GLAKPDHSPSVKSVGITGQLTG 151 Query: 162 KRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICS---VGRIVYLGTPQSTNSIYNT 218 RAD++IADDVE NS T R++L +L +F ++ R++YLGTPQ+ ++Y Sbjct: 152 SRADIIIADDVEVPGNSSTSSAREKLWTLVTEFAALLKPLPTSRVIYLGTPQTEMTLYKE 211 Query: 219 LP-GRGYCVRIWPGRYP-TEKQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQPTDL 276 L +GY IWP +YP + + YGD LAP+++ + G + +GQPTD Sbjct: 212 LEDNKGYSTVIWPAQYPRNDAEALYYGDRLAPMLKAEYDE--------GFELLRGQPTD- 262 Query: 277 ELPAGRE-DMLQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIMSMRVTDTLILPLT 335 P + D L+++E + G + + LQ MLN LSDA ++PL+LR + V D PL+ Sbjct: 263 --PVRFDTDDLRERELEYGKAGYTLQFMLNPNLSDAEKYPLRLRDAIVCAV-DPERAPLS 319 Query: 336 VT--PGLLDQHLIRYEANSRTYWMSTPSNLSEDRARVQGVVMYVDPAGGGQNGDETAYAV 393 P +++ + + + S A Q ++ +DP+G G+ DET YAV Sbjct: 320 YQWLPNRQNRNEELPNVGLKGDDIHSFHTCSSRTAEYQSKILVIDPSGRGK--DETGYAV 377 Query: 394 VAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAAWMPILK 453 + LNG ++++E G GGY + E L + A +W+V ++ E N G+G + + P+L Sbjct: 378 LYSLNGYIYLMEVGGFRGGYDDATLEKLAKKAKQWKVQTVVHESNFGDGMFGKIFSPVLL 437 Query: 454 AGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNEDASLQRY 513 ++A ALEE+ G KE RI D +EP++ LI D++ R + + + Sbjct: 438 KHHKA----------ALEEIRAKGMKEMRICDTIEPLMGSHKLIIRDEVIREDYQTSRDL 487 Query: 514 PAAHRTSYSLLNQIASITRDKNALTHDDRVDALAGAVRHWVQ 555 H YS Q+ +TR++ A+ HDDR+DA+A + W++ Sbjct: 488 DGKHDVRYSAFYQMTRMTRERGAVAHDDRLDAIALGI-EWLR 528 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 273 bits (698), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 196/570 (34%), Positives = 291/570 (51%), Gaps = 67/570 (11%) Query: 27 FKPFLHDVMTELGF-DTTEIQVDIAEFLEYGPHYLMIQAQRGQAKTTITAAYAVWSLIHN 85 FK FL V EL T Q+ IA++L++GP L I A RG K+ ITAA+ +W L + Sbjct: 14 FKFFLSLVWRELDLPKPTRAQLAIADYLQHGPKRLQISAFRGVGKSWITAAFVLWVLFVD 73 Query: 86 PRNRVVIVSAGGTQANEISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLD 145 P +++++SA +A+ S ++I+ ++ L+ LRP R++ R S SFDV + Sbjct: 74 PDRKIMVISASKERADNFSIFCQKLILDIEWLSHLRP-RDSDQRWSRISFDVGPAKP--H 130 Query: 146 KSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSIC---SVGR 202 ++PSV GIT M G RA L++ DDVE NS T+ QR++LL L + SI R Sbjct: 131 QAPSVKSVGITGQMTGSRAHLMVFDDVEVPANSATDMQREKLLQLVSESESILVPDDDAR 190 Query: 203 IVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTEKQLANYGDMLAPIIRRRMEADPSLMT 262 I++LGTPQST +IY L R Y +WP RYP + L+ Y +LAP + +E DP L Sbjct: 191 IMFLGTPQSTFTIYRKLAERSYRPFVWPARYP--RDLSKYEGLLAPQLVADLEKDPELT- 247 Query: 263 GGGLLMDQGQPTDLELPAGREDMLQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLRRIM 322 +PTD E L ++E+ G S F LQ ML+T+LSDA +FPLK + Sbjct: 248 --------WKPTDTRF---NELNLMERESAMGRSNFMLQFMLDTSLSDAEKFPLKFQ--- 293 Query: 323 SMRVTDTLILPLTVTPG-----LLDQHLIRYEAN------SRTYWMSTPSNLSEDRARVQ 371 D ++ PL D +R E N R Y P + E Sbjct: 294 -----DLIVTPLGAECAEAYAWSADPRYMRKELNPVGLPGDRFY---GPMYIDEGIVPYS 345 Query: 372 GVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVN 431 ++ VDP+G G DET V++ NG ++V + GYS + + R++ + Sbjct: 346 ETIVSVDPSGRGT--DETVAVVLSQANGYIFVRDMKAFRDGYSDETLSDIVRLGKRYKAS 403 Query: 432 RIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVI 491 +++VE N G+G + I + GG EEV + +KE+RII+ LEPV+ Sbjct: 404 KLLVESNFGDGMITELF---------KRHISQMGGGMDTEEVRASARKEERIIETLEPVM 454 Query: 492 ARGALIFND-----DIPRNEDASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDAL 546 + LI + D N DA+ ++ R Y L Q++ + R+K A+ HDDRVDAL Sbjct: 455 NQHKLIIDPKVWEYDYSSNPDAAPEK-----RLEYMLGYQMSRMCREKGAVKHDDRVDAL 509 Query: 547 AGAVRHWVQVIGQNQEKAVENLRKREFEEW 576 + V+++V + Q+ K + LRK EEW Sbjct: 510 SQGVQYYVDAVAQSAFKQ-QALRKH--EEW 536 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 251 bits (640), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 187/585 (31%), Positives = 288/585 (49%), Gaps = 75/585 (12%) Query: 16 MLDMVRSAYPVFKPFLHDVMTELGFDT-TEIQVDIAEFLEYGPHYLMIQAQRGQAKTTIT 74 M D +++ FK FL + +L + T Q IA++L+ GP L IQA RG K+ IT Sbjct: 1 MNDTLKALQGDFKLFLQALWDQLDLPSPTRAQYAIADYLQSGPKRLQIQAFRGVGKSWIT 60 Query: 75 AAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELACLRPDRNAGDRSSVES 134 A+ +W+L ++ +++I+SA +A+ +S + ++I+ L LRP + S + S Sbjct: 61 GAFVLWTLFNDAEKKIMIISASKERADNMSIFLQKLIIETPWLKHLRPKSDDARWSRI-S 119 Query: 135 FDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLTRDF 194 FDV L ++PSV GIT + G RADL+I DD+E NS+TE R++LL L + Sbjct: 120 FDV---LCSPHQAPSVKSVGITGQLTGSRADLMILDDIEVPGNSMTELMREKLLQLCTEA 176 Query: 195 PSICSV---GRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTEKQLANYGDMLAPIIR 251 SI + RI+YLGTPQ+T ++Y L R Y +WP RYP K + Y ++AP ++ Sbjct: 177 ESILTPKDDSRIMYLGTPQTTFTVYRKLAERAYRPFVWPARYP--KDITPYEGLIAPQLQ 234 Query: 252 RRMEADPSLMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPSYFQLQHMLNTTLSDA 311 + D +G T + +D LQ++E+ G S F LQ ML+TTLSDA Sbjct: 235 E--DIDNGAESG----------TVTDPDRFDDDDLQQRESAMGRSNFMLQFMLDTTLSDA 282 Query: 312 TRFPLKLRRIMSMRVTDTLILPLTVTPGLLDQHLIRYEANSRTYWMSTPSNLSEDRARV- 370 +FPLK+ ++ V T EA W S P N+ +D V Sbjct: 283 EKFPLKMADLVITSVNPT-------------------EAPDNVIWCSDPQNIIKDAPTVG 323 Query: 371 -------------------QGVVMYVDPAGGGQNGDETAYAVVAHLNGNLWVLECSGVPG 411 Q + VDP+G G DETA ++ NG L++ E Sbjct: 324 LPGDYFYSPMQLQGEWTPYQETICSVDPSGRG--TDETAACYLSQKNGFLYLHEMRAYRD 381 Query: 412 GYSVSGYEHLTEVAARWRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALE 471 GYS + + + ++ ++VE N G+G + L+ QA + + Sbjct: 382 GYSDATLLDILKGCKKYNATTLVVETNFGDGIVSELFKKHLQQTKQAIFV---------D 432 Query: 472 EVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASIT 531 EV +KE RIID LEPV+ + LI + + + +S + P R Y L Q++ + Sbjct: 433 EVRANVRKEDRIIDSLEPVLNQHRLIVDRGVIDWDYSSNKDCPPESRLLYMLFYQMSRMC 492 Query: 532 RDKNALTHDDRVDALAGAVRHWVQVIGQNQEKAVENLRKREFEEW 576 R K A+ HDDR+D LA V+++ + + ++ + NLRKR EEW Sbjct: 493 RMKFAVKHDDRLDCLAQGVKYFTDSLSISAQEQI-NLRKR--EEW 534 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 52.8 bits (125), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 7/173 (4%) Query: 61 MIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGT----QANEISTLIVRIIMTMDE 116 +I R K+ + A + W + +P ++ +SA T Q + ++ + Sbjct: 73 LIMLPRAHLKSHMVATWCAWIITRHPEVTILYISATATLAETQLYAVKNILASSVYNRYF 132 Query: 117 LACLRPDRNAGDRSSVESFDVHHSLKGLD--KSPSVACFGITANMQGKRADLLIADDVES 174 + P ++ S + + H + + + ++A G+T N G AD+++ADD+ Sbjct: 133 PEYIHPQEGKREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIVADDLVV 192 Query: 175 AKNSLTEHQRDQLLSLTRDFPSICSVGRIVY-LGTPQSTNSIYNTLPGRGYCV 226 +N+ TE R+ + + F SI + G GT + IY T + Y + Sbjct: 193 PENAYTEDGRESVQKKSSQFTSIRNAGGFTMACGTRYHPSDIYATWRSQKYDI 245 Score = 25.8 bits (55), Expect = 1.7, Method: Compositional matrix adjust. Identities = 10/55 (18%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 383 GQNGDETAYAVVA-HLNGNLWVLECSGVPGGYSVSGYEHLTEVAARWRVNRIMVE 436 + D TA V+ + N++V++ ++ ++H+ + ++W N++ E Sbjct: 361 SRQADYTAIVVIGIDCDNNIYVVDIDRFKSDKTLEYFQHIKALHSKWVFNKLQAE 415 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 51.6 bits (122), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 108/483 (22%), Positives = 191/483 (39%), Gaps = 102/483 (21%) Query: 61 MIQAQRGQAKTTITAA-YAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELAC 119 ++ A RG K+T+ + Y +W + NP RV++ GT +S +R + E Sbjct: 60 LVLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLV----GTNLKRLSRAFIRELRQYFEDTW 115 Query: 120 LR---------------PDRNAGDR----SSVESFDVHHSLKGLD--------------- 145 L+ P +A DR S + D +L L Sbjct: 116 LQQNVWNVRPHIEGALVPALSASDRRKRNSQRNNVDYDEALATLTDDTKLIWSMEALQVI 175 Query: 146 -----KSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICSV 200 K P+V I + G DLLI DD+ +NS TE + + +L TRD S+ Sbjct: 176 RPTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDKAENILEWTRDLESV--- 232 Query: 201 GRIVYLGTPQSTNSIYNTLPGRGYCVRIWPGRYPTEKQLANY-GDMLAPIIRRRMEADPS 259 L Q YN + + + + G+ T+ + ++ GD + R + D Sbjct: 233 -----LDPRQEHVYHYNPVANKAGALVV--GK--TKCEFTDFVGDEAVILGTRYFQWDYY 283 Query: 260 LMTGGGLLMDQGQPTDLELPAGREDMLQKKEADQGPSYFQLQHMLNTTLSDATRFPLKLR 319 G L+D+ + L + + ++ + E D+ ++ + DA R Sbjct: 284 -----GYLLDEAEY--LGIRSFMCNIYKNGEDDKDGYLWEERF-------DAEVVENIKR 329 Query: 320 RIMSMRVTDTLILPLTVTPGLLDQHLIRYEANSRTYWMSTPSNLSED----------RAR 369 R+ S R + L VT D+ L+ E + Y+ ++S+D + R Sbjct: 330 RLNSFRRFASQYLNRIVTA---DEQLLPQE--NVQYFHPASVDVSDDGFVSINRDGYKVR 384 Query: 370 VQGVVMYVDPA-GGGQNGDETAYAVVAHLNG-NLWVLECSGVPGGYSVS-GYEHLTEVAA 426 V+ +++ VDPA + D T V + N NL++ + G ++ S +H+ +A Sbjct: 385 VKPMLV-VDPAVSQKKTADNTVLTVGGYDNDKNLYIFDVKA--GKFTPSETIKHIFTLAD 441 Query: 427 RWRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDV 486 ++++N + +E +G A L+ YQ + A+ E G K+ RI + Sbjct: 442 KYKLNAVTLE-TVGGFALLS---------YQVKDAFKTHRPLAIREYRPKGDKQGRITAM 491 Query: 487 LEP 489 LEP Sbjct: 492 LEP 494 >gi|15319|lcl|protein:vir:3140 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640322;genbank:gi:21234401;genbank:GeneID :956064 Length = 535 Score = 51.2 bits (121), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 11/163 (6%) Query: 66 RGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLI-VRIIMTMDELACLRPD- 123 R K+ A + W + NP V I T++ I L ++ I+T DE L PD Sbjct: 71 RDHQKSHCIAVWVCWQIFKNPA--VTIAYVCATESLAILQLYDIKQILTSDEFTRLSPDM 128 Query: 124 ----RNAGDRSSVESFDVHHSLKGLDK--SPSVACFGITANMQGKRADLLIADDVESAKN 177 + + + V H ++ ++ P+V G+ +N G ++++ DDV KN Sbjct: 129 IEPMEKKRQKWAETAIIVDHPIRKKERPRDPTVLATGLDSNNIGAHCNIMVKDDVVIDKN 188 Query: 178 SLTEHQRDQLLSLTRDFPSICSV-GRIVYLGTPQSTNSIYNTL 219 SLTE R ++ + SI + G +GT Y TL Sbjct: 189 SLTETARQKVEAKAGHLSSILTTDGMEFCVGTRYHPKDHYQTL 231 >gi|26461|lcl|protein:vir:573 Length: 589 # NCBI annotation: unknown # Family: family:all:4926 # MgeID: mge:13 # MgeName: SPBc2 # Cross-refs: genbank:acc:NP_046608;genbank:gi:9630181;genbank:GeneID: 1261423 Length = 589 Score = 40.0 bits (92), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 13/117 (11%) Query: 58 HYLMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDEL 117 HY M A RGQ KT +T+ Y I P ++VI S QA E +I +D+L Sbjct: 78 HYFMYLASRGQGKTWLTSVYCCVQAILFPGTKIVIASGTKGQARE-------VIEKIDDL 130 Query: 118 ACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITAN--MQGKRADLLIADDV 172 P+ R +E + ++ + +N + KRA+LLI D+ Sbjct: 131 RKESPNL----RREIEDLKTSTNDAKVEFHNGSWIKIVASNDGARSKRANLLIVDEF 183 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 17/134 (12%) Query: 49 IAEFLEYGPHYLMIQAQRGQAKTTITAAYA-VWSLIHNPRNRVVIVSAGGTQANEISTLI 107 I + L Y L++ + K+T+ A + + +L NP R+++ + G + A++ ST Sbjct: 69 IEDVLRYPRCNLLVTMPPQEGKSTMCAVWTPIRALQLNPNRRIILATYGDSLADQHSTTA 128 Query: 108 VRIIM-----TMDELACLRPDRNAG-----DRSSVESFDVHHSLKGLDKSPSVACFGITA 157 +IM D L L + G ++ V S+ + ++ G+ G+ + Sbjct: 129 RDLIMRYGTGVTDALTGLAVEDKLGLKINPKQAKVSSWRIDGAIGGM------VAAGLGS 182 Query: 158 NMQGKRADLLIADD 171 + GK ADL I DD Sbjct: 183 AITGKSADLFIIDD 196 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 36.2 bits (82), Expect = 0.001, Method: Compositional matrix adjust. Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 31/235 (13%) Query: 62 IQAQRGQAKTT-ITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELACL 120 I A RG AK+T ++ + +W ++ ++ +I+ QA + I + LA Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 121 RPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG-----KRADLLIADDVESA 175 P R + V + D V FG M+G R DL+I DD+E+ Sbjct: 149 FPQGAGKGRV----WQVGTIVTANDAK--VQVFGSGKRMRGLRHGPHRPDLVIGDDLEND 202 Query: 176 KNSLTEHQRDQLLSLTRDFPSICSVGR------IVYLGTPQSTNSIYNTL------PGRG 223 +N + QRD+L + + ++ S+G ++ +GT +S+ + L R Sbjct: 203 ENVRSPEQRDKLENWLKK--TVLSLGSADDTMDVIIIGTILHYDSVLSRLLKNPLWKRRK 260 Query: 224 YCVRI-WPGRYPT----EKQLANYGDMLAPIIRRRMEADPSLMTGGGLLMDQGQP 273 + I WP R E+ L N D A + E ++ G + GQP Sbjct: 261 FKAIIEWPHRMDLWEKWEELLLNSDDEGAAALAFYQERAAAMEDGAIICWPDGQP 315 >gi|3935|lcl|protein:vir:103868 Length: 551 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938233;genbank:gi:38229138;genbank:GeneID :2648183 Length = 551 Score = 35.0 bits (79), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 20/170 (11%) Query: 62 IQAQRGQAKTT-ITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELACL 120 I A RG AK+T ++ + +W ++ ++ +I+ QA + I + LA Sbjct: 89 IAAPRGNAKSTLVSQIFVIWCVLTGRKHYPLIIMDAFEQAATMLEAIKAELEFNPRLAMD 148 Query: 121 RPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG-----KRADLLIADDVESA 175 P R + V + D V FG M+G R DL++ DD+E+ Sbjct: 149 FPQGAGKGRV----WQVGTIVTANDAK--VQVFGSGKRMRGLRHGPHRPDLVVGDDLEND 202 Query: 176 KNSLTEHQRDQLLSLTRDFPSICSVGR------IVYLGTPQSTNSIYNTL 219 +N + QRD+L + + ++ S+G ++ +GT +S+ + L Sbjct: 203 ENVRSPEQRDKLENWLKK--TVLSLGSADDTMDVIIIGTILHYDSVLSRL 250 >gi|8062|lcl|protein:vir:103374 Length: 536 # NCBI annotation: putative head assembly cofactor # Family: family:all:543 # MgeID: mge:1621 # MgeName: PaP2 # Cross-refs: genbank:acc:YP_024735;genbank:gi:48697077;genbank:GeneID :2846042 Length = 536 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 22/209 (10%) Query: 19 MVRSAYPVFKPFLHDVMTELGFDTTEIQVDIAEFLEYGPHYLMIQAQRGQAKTTITAAYA 78 ++R +P F L ++T+L D E+ + RG KT Sbjct: 72 VMRVPFPAFYCQLFTLLTQLNPDPYELM------------RFALGLPRGFVKTGFLKILT 119 Query: 79 VWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIM--TMDELACLRPDRNAGDRSSVESFD 136 W + ++IV A +A T + ++ ++E+ L + D + + Sbjct: 120 CWFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGT 179 Query: 137 VHHSLKGLDKSPSVACFGITA-NMQGKRADLLIADDVESAKNSLTEHQRDQLL-----SL 190 ++ + L P+ A + N KR DL++ DDV++ + +L+E Q LL +L Sbjct: 180 INGKVVIL--LPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATL 237 Query: 191 TRDFPSICSVGRIVYLGTPQSTNSIYNTL 219 + + S RI+YLG + I L Sbjct: 238 VKCIDNYGSNRRIIYLGNMYPGDCILQML 266 >gi|7770|lcl|protein:vir:96410 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1616 # MgeName: 119X # Cross-refs: genbank:acc:YP_001218809;genbank:gi:147917326;genbank:Ge neID:5142613 Length = 536 Score = 34.3 bits (77), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 22/209 (10%) Query: 19 MVRSAYPVFKPFLHDVMTELGFDTTEIQVDIAEFLEYGPHYLMIQAQRGQAKTTITAAYA 78 ++R +P F L ++T+L D E+ + RG KT Sbjct: 72 VMRVPFPAFYCQLFTLLTQLNPDPYELM------------RFALGLPRGFVKTGFLKILT 119 Query: 79 VWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIM--TMDELACLRPDRNAGDRSSVESFD 136 W + ++IV A +A T + ++ ++E+ L + D + + Sbjct: 120 CWFIHFGYAEFILIVCASEPKAVAFITDVDNMLSQPNIEEIFGLWSATKSVDNAKKKVGT 179 Query: 137 VHHSLKGLDKSPSVACFGITA-NMQGKRADLLIADDVESAKNSLTEHQRDQLL-----SL 190 ++ + L P+ A + N KR DL++ DDV++ + +L+E Q LL +L Sbjct: 180 INGKVVIL--LPAGAGTAVRGTNEDHKRPDLIVCDDVQTRECALSEVQNAALLEWFTATL 237 Query: 191 TRDFPSICSVGRIVYLGTPQSTNSIYNTL 219 + + S RI+YLG + I L Sbjct: 238 VKCIDNYGSNRRIIYLGNMYPGDCILQML 266 >gi|23408|lcl|protein:vir:103169 Length: 549 # NCBI annotation: gp123 # Family: family:all:147 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717790;genbank:gi:113200627;genbank:GeneI D:4239178 Length = 549 Score = 33.1 bits (74), Expect = 0.010, Method: Compositional matrix adjust. Identities = 44/204 (21%), Positives = 85/204 (41%), Gaps = 29/204 (14%) Query: 22 SAYPVFKPFLHDVMTELGFDTTEIQVDIAEFLE------YGPHYLMIQAQRGQAKTTITA 75 S PV+ F+ + + + D I D+ F E + + + + R K+TI Sbjct: 34 SENPVY--FIKNYIKIVSLDKGLIPFDMYYFQEEMVQKFHDNRFNIAKLPRQSGKSTIVT 91 Query: 76 AYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDEL-ACLRPDRNAGDRSSVES 134 +Y +W ++ N V I++ A E ++ R+ ++ + L L+ +R S+E Sbjct: 92 SYLLWYVLFNANVNVAILANKAATARE---MLQRLQLSYENLPKWLQQGILQWNRGSLE- 147 Query: 135 FDVHHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLTRDF 194 + + K L S S + ++G +++ D+ N H DQ S + Sbjct: 148 --LENGSKILAASTSASA------VRGMSFNVIFLDEFAFVPN----HVADQFFSSV--Y 193 Query: 195 PSICS--VGRIVYLGTPQSTNSIY 216 P+I S +++ + TP N Y Sbjct: 194 PTISSGKSTKVIIISTPHGMNMFY 217 >gi|4089|lcl|protein:vir:94598 Length: 581 # NCBI annotation: PfWMP4_40 # Family: family:all:543 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762670;genbank:gi:115304378;genbank:GeneI D:5142298 Length = 581 Score = 31.6 bits (70), Expect = 0.027, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%) Query: 57 PHYLMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVR 109 P ++Q RG K+T+T Y +W + NP R++ S E+S +R Sbjct: 86 PTNRLLQMPRGHLKSTLTVGYIMWRIYRNPNIRMLHAS----NIRELSEAFIR 134 Score = 28.1 bits (61), Expect = 0.29, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 16/93 (17%) Query: 411 GGYSVSGYEHLTEVAAR----WRVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSG 466 G YSV EH + AR W V R+ VE Y I+K + E Sbjct: 434 GHYSV---EHTLDEIARLVVLWNVKRMYVETIAFQSLYRDR---IIK------HLAEKKI 481 Query: 467 GCALEEVWEAGQKEKRIIDVLEPVIARGALIFN 499 CA+ + G K KRI L +G ++FN Sbjct: 482 QCAVLDYKPVGNKHKRIESHLSSYFNQGNVVFN 514 >gi|12256|lcl|protein:vir:79447 Length: 485 # NCBI annotation: phage terminase large subunit # Family: family:all:147 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468054;genbank:gi:157265496;genbank:Ge neID:5600564 Length = 485 Score = 30.0 bits (66), Expect = 0.072, Method: Compositional matrix adjust. Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 32/190 (16%) Query: 51 EFLEYGPHYLMIQAQRGQAKTTI------------TAAYAVWSLIHNPRNRVVIVSAGGT 98 E L Y PH++ + R AK + + AV+ L P ++ I++ Sbjct: 12 ELLGYKPHHVQLAIHRSTAKRRVACLGRQSGKSEAASVEAVFELFARPGSQGWIIAPTYD 71 Query: 99 QANEISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHH-----SLKGLDKSPSVACF 153 QA + R++ ++ LA + P + VHH + G + + Sbjct: 72 QAE---IIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRVATSEFR 128 Query: 154 GITA----NMQGKRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICSVGRIVYLGTP 209 G +A N++G D +I D+ S+ + LS+ RD G + + TP Sbjct: 129 GKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSV-RD-------GWALIISTP 180 Query: 210 QSTNSIYNTL 219 + N Y Sbjct: 181 KGLNWFYEFF 190 >gi|10766|lcl|protein:vir:78016 Length: 485 # NCBI annotation: terminase large subunit # Family: family:all:147 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467938;genbank:gi:157265379;genbank:Ge neID:5600506 Length = 485 Score = 30.0 bits (66), Expect = 0.076, Method: Compositional matrix adjust. Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 32/190 (16%) Query: 51 EFLEYGPHYLMIQAQRGQAKTTI------------TAAYAVWSLIHNPRNRVVIVSAGGT 98 E L Y PH++ + R AK + + AV+ L P ++ I++ Sbjct: 12 ELLGYKPHHVQLAIHRSTAKRRVACLGRQSGKSEAASVEAVFELFARPGSQGWIIAPTYD 71 Query: 99 QANEISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHH-----SLKGLDKSPSVACF 153 QA + R++ ++ LA + P + VHH + G + + Sbjct: 72 QAE---IIFGRVVEKVERLAEVFPATEVQLQRRRLRLLVHHYDRPVNAPGAKRVATSEFR 128 Query: 154 GITA----NMQGKRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSICSVGRIVYLGTP 209 G +A N++G D +I D+ S+ + LS+ RD G + + TP Sbjct: 129 GKSADRPDNLRGATLDFVILDEAAMIPFSVWSEAIEPTLSV-RD-------GWALIISTP 180 Query: 210 QSTNSIYNTL 219 + N Y Sbjct: 181 KGLNWFYEFF 190 >gi|22263|lcl|protein:vir:104536 Length: 550 # NCBI annotation: gp17 # Family: family:all:147 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214662;genbank:gi:61806303;genbank:GeneID :3294591 Length = 550 Score = 30.0 bits (66), Expect = 0.085, Method: Compositional matrix adjust. Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 29/201 (14%) Query: 25 PVFKPFLHDVMTELGFDTTEIQVDIAEFLE-----YGPHYLMI-QAQRGQAKTTITAAYA 78 PV+ F+ + + D I D+ F E + H I + R K+TI AY Sbjct: 38 PVY--FIRKYIRIVSLDEGVIPFDMYNFQEDMVTKFHQHRFNIAKLPRQSGKSTIVTAYL 95 Query: 79 VWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDELACLRPDRNAG-DRSSVESFDV 137 +W ++ N V I++ A E ++ R+ ++ + L G ++ S+E + Sbjct: 96 LWYVLFNANVNVAILANKAPTARE---MLGRLQLSYENLPKWMQQGILGWNKGSLE---L 149 Query: 138 HHSLKGLDKSPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSLTRDFPSI 197 + K L S S + ++G +++ D+ N + E +P+I Sbjct: 150 ENGSKILASSTSASA------VRGMSFNIIFLDEFAFVPNHIAEQ------FFASVYPTI 197 Query: 198 CS--VGRIVYLGTPQSTNSIY 216 S +++ + TP N Y Sbjct: 198 SSGKSTKVIIISTPHGMNQFY 218 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 30.0 bits (66), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 155 ITANMQGKRADLLIADDVESAK-NSLTEHQRDQLLSLTRDFPSICSVGRIVYLGTPQSTN 213 + ++G RA LLI DD+ K + TE D + ++ P + GR V +GT + + Sbjct: 173 LGGGIEGDRAHLLILDDIIKEKGDGDTEDVLDWIEAVC--VPMVKDHGRTVVIGTRKRPD 230 Query: 214 SIY 216 IY Sbjct: 231 DIY 233 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 29.6 bits (65), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 25/139 (17%) Query: 58 HYLMIQAQRGQAKTTITAAYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMTMDEL 117 +Y+ R TIT + + L+ NP+ RV+ S A + Sbjct: 63 YYIFEMPPRHSKSMTITETFPSYFLMKNPKKRVITTSYSDALAKQFG------------- 109 Query: 118 ACLRPDRNAGDRSSVESFDVHHSLKGLDKSP-SVACFG-------ITANMQGKRADLLIA 169 R +R+ + + FD+H + + S+ +G + G+ ADLLI Sbjct: 110 ---RKNRDKIKMAGDQLFDIHINPANSGVTDWSIDQYGGGMYSTSMLGGATGRGADLLII 166 Query: 170 DD-VESAKNSLTEHQRDQL 187 DD +++ + + ++ RD++ Sbjct: 167 DDPIKNREEAESKTIRDKI 185 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 29.3 bits (64), Expect = 0.14, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 30/154 (19%) Query: 39 GFDTTEIQVDIAEFLEYGPHY-------LMIQAQRGQAKTTITAAYAVWSLIH-NPRNRV 90 GF+ T IAE +E H L+I + K+T+ + Y V + NP R+ Sbjct: 66 GFNITPALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARI 125 Query: 91 VIVSAGGTQAN----EISTLI------VRIIMT---MDELACLRPDRNAGDRSSVESFDV 137 ++ G A+ + LI VR MT +++ L+ +R A + V + + Sbjct: 126 ILACYGQDLAHGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGA---NKVSEWSI 182 Query: 138 HHSLKGLDKSPSVACFGITANMQGKRADLLIADD 171 GL G+ + GK ADL I DD Sbjct: 183 EGGTGGL------VATGLGGTITGKPADLFIIDD 210 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 28.5 bits (62), Expect = 0.21, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 30/154 (19%) Query: 39 GFDTTEIQVDIAEFLEYGPHY-------LMIQAQRGQAKTTITAAYAVWSLIH-NPRNRV 90 GF+ T IAE +E H L+I + K+T+ + Y V + NP R+ Sbjct: 64 GFNITPALWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARI 123 Query: 91 VIVSAGGTQAN----EISTLI------VRIIMT---MDELACLRPDRNAGDRSSVESFDV 137 ++ G A+ + LI VR MT +++ L+ +R A + V + + Sbjct: 124 ILACYGQDLAHGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGA---NKVSEWSI 180 Query: 138 HHSLKGLDKSPSVACFGITANMQGKRADLLIADD 171 GL G+ + GK ADL I DD Sbjct: 181 EGGSGGL------VATGLGGTITGKPADLFIIDD 208 >gi|24686|lcl|protein:vir:79769 Length: 635 # NCBI annotation: terminase large subunit # Family: family:all:4877 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429607;genbank:gi:156564098;genbank:Ge neID:5525534 Length = 635 Score = 26.9 bits (58), Expect = 0.61, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 5/72 (6%) Query: 102 EISTLIVRIIMTMDELACLRPDRNAGDRSSVESFDVHHSLKGLDKSPSVACFGITANMQG 161 ++ + R+ +D + P R+ + + V H + KS S A AN +G Sbjct: 130 QVDLIFKRLSQLIDMSGDVNPSRDIDKHIELPNGTVIHGITAGSKSGSGA-----ANTRG 184 Query: 162 KRADLLIADDVE 173 +RADL++ D+++ Sbjct: 185 QRADLIVLDEMD 196 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 26.2 bits (56), Expect = 1.2, Method: Compositional matrix adjust. Identities = 15/44 (34%), Positives = 21/44 (47%) Query: 147 SPSVACFGITANMQGKRADLLIADDVESAKNSLTEHQRDQLLSL 190 S V AN++ K+A DD+ES K HQ D ++ L Sbjct: 14 SKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGL 57 >gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: gp242 # Family: family:all:11526 # MgeID: mge:1550 # MgeName: Catera # Cross-refs: genbank:acc:YP_656220;genbank:gi:109393421;genbank:GeneI D:4156748 Length = 1007 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 15/33 (45%) Query: 507 DASLQRYPAAHRTSYSLLNQIASITRDKNALTH 539 DA L R+P + SY N I+ K T+ Sbjct: 784 DAYLTRFPTIEKMSYDQFNSAGLISHQKRKFTN 816 >gi|108|lcl|protein:vir:1985 Length: 551 # NCBI annotation: putative portal protein # Family: family:all:460 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050632;genbank:gi:9633519;genbank:GeneID: 2636303 Length = 551 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 15/27 (55%) Query: 329 TLILPLTVTPGLLDQHLIRYEANSRTY 355 T+ +PL +TP L + R E + TY Sbjct: 362 TVFVPLAITPDLRKRECFRVELRNVTY 388 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 17/123 (13%) Query: 60 LMIQAQRGQAKTTITA-AYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMT----- 113 L I + K+T+ A A + +L HNP ++++ + A S + I T Sbjct: 110 LEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDV 169 Query: 114 MDELACLRPDRNAGDR-----SSVESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLI 168 +D L L + G + + V ++ V GL GI + + G ADL+I Sbjct: 170 VDPLTGLPVEDKIGLKLARGANKVTAWSVAGGRGGL------VAAGIGSRLTGMPADLMI 223 Query: 169 ADD 171 DD Sbjct: 224 IDD 226 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 24.3 bits (51), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 17/123 (13%) Query: 60 LMIQAQRGQAKTTITA-AYAVWSLIHNPRNRVVIVSAGGTQANEISTLIVRIIMT----- 113 L I + K+T+ A A + +L HNP ++++ + A S + I T Sbjct: 110 LEISMPPQEGKSTLAAVATPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDV 169 Query: 114 MDELACLRPDRNAGDR-----SSVESFDVHHSLKGLDKSPSVACFGITANMQGKRADLLI 168 +D L L + G + + V ++ V GL GI + + G ADL+I Sbjct: 170 VDPLTGLPVEDKIGLKLARGANKVTAWSVAGGRGGL------VAAGIGSRLTGMPADLMI 223 Query: 169 ADD 171 DD Sbjct: 224 IDD 226 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 23.9 bits (50), Expect = 6.0, Method: Compositional matrix adjust. Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 20/145 (13%) Query: 449 MPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIIDVLEPVIARGALIFNDDIPRNEDA 508 + ++ GY A M+ + + +R ++ +P L +I R +D Sbjct: 482 LDVVFFGYDAMMVNKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRRDDE 541 Query: 509 SLQRYPAAHRTSYSLLNQIAS-----ITRDKNALTHD-DRVDALAGAVRHWVQV-----I 557 +++ +L+N + I DK T+ D VDAL A + I Sbjct: 542 IMRK---------ALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFEDYAI 592 Query: 558 GQNQEKAVENLRKREFEEWVKNPKG 582 N VE++ + EW+KNP+ Sbjct: 593 TNNPTWKVEHMSQEAVLEWLKNPES 617 >gi|16791|lcl|protein:vir:2742 Length: 168 # NCBI annotation: putative structural protein # Family: family:all:464 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695115;genbank:gi:23455884;genbank:GeneID :955649 Length = 168 Score = 23.5 bits (49), Expect = 7.3, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%) Query: 168 IADDVESAKNSL-TEHQ----RDQLLSLTRDFPSICSVG-----RIVYLGTPQSTNSIYN 217 + D +AK +L TEH+ RD + T+D + G I +GT N + Sbjct: 20 LGDKTAAAKLALQTEHEWEYSRDADSTKTKDGAVVADGGLETKLSISAIGTKDDLNEMLK 79 Query: 218 TLPGRGYCVRIWPGRYPTEKQLANYGDMLA 247 GY V +W +K YG + A Sbjct: 80 KSVVDGYKVEVWEIDLADKKSDGKYGALYA 109 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 23.5 bits (49), Expect = 7.7, Method: Compositional matrix adjust. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 33/123 (26%) Query: 429 RVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIID--- 485 RVN +E+N G ++ + + +G CA+E+ ++ KE RI Sbjct: 351 RVNASRIERNNGGRSFARSVRDKI----------QGKVACAVEDFFQGNNKEARIYSNSY 400 Query: 486 VLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDA 545 +E + R+P RT + Q + + + HDD DA Sbjct: 401 WIEQHV--------------------RFPNDWRTRFPEYYQAMTTYQREGKNKHDDAPDA 440 Query: 546 LAG 548 G Sbjct: 441 TTG 443 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 23.1 bits (48), Expect = 8.9, Method: Compositional matrix adjust. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 33/123 (26%) Query: 429 RVNRIMVEKNMGNGAYLAAWMPILKAGYQATMIGEGSGGCALEEVWEAGQKEKRIID--- 485 RVN +E+N G ++ + + +G CA+E+ ++ KE RI Sbjct: 291 RVNASRIERNNGGRSFARSVRDKI----------QGKVACAVEDFFQGNNKEARIYSNSY 340 Query: 486 VLEPVIARGALIFNDDIPRNEDASLQRYPAAHRTSYSLLNQIASITRDKNALTHDDRVDA 545 +E + R+P RT + Q + + + HDD DA Sbjct: 341 WIEQHV--------------------RFPNDWRTRFPEYYQAMTTYQREGKNKHDDAPDA 380 Query: 546 LAG 548 G Sbjct: 381 TTG 383 >gi|20243|lcl|protein:vir:106989 Length: 548 # NCBI annotation: terminase large subunit gp17 # Family: family:all:147 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195134;genbank:gi:58532911;uniprot:Q5GQN8 ;genbank:GeneID:3260486 Length = 548 Score = 23.1 bits (48), Expect = 9.6, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 15/31 (48%) Query: 484 IDVLEPVIARGALIFNDDIPRNEDASLQRYP 514 +D L AL+FND I RN+ + P Sbjct: 272 VDTLIAASKLKALVFNDPIKRNKGLDIYEEP 302 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.134 0.399 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 268,146 Number of Sequences: 514 Number of extensions: 12145 Number of successful extensions: 183 Number of sequences better than 100.0: 53 Number of HSP's better than 100.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 43 Number of HSP's gapped (non-prelim): 64 length of query: 605 length of database: 206,069 effective HSP length: 77 effective length of query: 528 effective length of database: 166,491 effective search space: 87907248 effective search space used: 87907248 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)