Results of the Virfam Analysis 

on the Neck Module and part of the Head and Tail Proteins


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Protein Superfamily Index in Query Genome Sequence Header Detection Method
MCP 17 lcl|NC_010763.1_cdsid_YP_001936108.1 HHsearch (proba=96.48%)
Portal 9 lcl|NC_010763.1_cdsid_YP_001936100.1 HHsearch (proba=100.00%)
TermL 8 lcl|NC_010763.1_cdsid_YP_001936099.1 Blast (e-value=0)
MTP 25 lcl|NC_010763.1_cdsid_YP_001936116.1 Blast (e-value=1e-164)
Sheath NOT FOUND
Ad1 19 lcl|NC_010763.1_cdsid_YP_001936110.1 HHsearch (proba=100.00%)
Hc1 20 lcl|NC_010763.1_cdsid_YP_001936111.1 HHsearch (proba=100.00%)
Ne1 21 lcl|NC_010763.1_cdsid_YP_001936112.1 HHsearch (proba=100.00%)
Tc1 22 lcl|NC_010763.1_cdsid_YP_001936113.1 HHsearch (proba=100.00%)
Ad2 NOT FOUND
Hc2 NOT FOUND
Tc2 NOT FOUND
Ad3 NOT FOUND
Hc3 NOT FOUND
Ad4 NOT FOUND

NB : Matches obtained with a HHsearch probability between 70 % and 90 % should be considered with caution.
Check that the canonical intergene below is not violated in that case.




No unsual intergene distance were detected.

Protein Superfamily Corresponding Protein in Aclame Aclame Phage Seq. Identity (%)
MCP protein:vir:101607
protein:vir:104256
protein:vir:8102
11b
T5
Che9c
9 %
11 %
12 %
Portal protein:vir:102239
protein:vir:101494
protein:vir:7430
PBI1
PLot
Barnyard
99 %
98 %
36 %
TermL protein:vir:102238
protein:vir:101493
protein:vir:7429
PBI1
PLot
Barnyard
100 %
100 %
45 %
MTP protein:vir:102193
protein:vir:101512
protein:vir:7453
PBI1
PLot
Barnyard
100 %
100 %
52 %
Ad1 protein:vir:102188
protein:vir:101506
protein:vir:7446
PBI1
PLot
Barnyard
100 %
100 %
35 %
Hc1 protein:vir:102189
protein:vir:101507
protein:vir:7447
PBI1
PLot
Barnyard
100 %
100 %
36 %
Ne1 protein:vir:101508
protein:vir:102190
protein:vir:7449
PLot
PBI1
Barnyard
100 %
100 %
43 %
Tc1 protein:vir:102191
protein:vir:101509
protein:vir:7450
PBI1
PLot
Barnyard
100 %
99 %
36 %