Query lcl|Aclame:protein:vir:80453|NCBI_annot:BcepGomrgp05|genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Match_columns 535 No_of_seqs 132 out of 201 Neff 7.6 Searched_HMMs 1612 Date Mon Dec 2 01:40:00 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_72 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_72_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:80453 Length: 535 100.0 1E-190 7E-194 1061.9 57.5 535 1-535 1-535 (535) 2 protein:vir:95149 Length: 501 100.0 2E-155 1E-158 868.6 53.4 489 32-524 1-501 (501) 3 protein:vir:97265 Length: 513 100.0 1E-146 7E-150 820.8 53.8 483 32-535 1-512 (513) 4 protein:vir:95014 Length: 491 100.0 4E-145 2E-148 812.3 51.9 483 22-519 1-491 (491) 5 protein:vir:78393 Length: 489 100.0 3E-144 2E-147 807.7 52.0 485 22-522 1-489 (489) 6 protein:vir:94956 Length: 452 100.0 4E-137 3E-140 768.2 50.6 446 32-517 1-452 (452) 7 protein:vir:96783 Length: 488 100.0 5E-136 3E-139 762.4 49.1 469 12-503 1-488 (488) 8 protein:vir:106571 Length: 499 100.0 1.7E-34 1E-37 205.8 40.0 470 1-535 1-497 (499) 9 protein:vir:5961 Length: 503 # 100.0 1.2E-33 7.5E-37 201.0 41.3 477 1-531 1-503 (503) 10 protein:vir:102602 Length: 456 100.0 1.5E-33 9.4E-37 200.5 34.5 437 28-528 1-456 (456) 11 protein:vir:105819 Length: 456 100.0 1.5E-33 9.4E-37 200.5 34.5 437 28-528 1-456 (456) 12 protein:vir:99072 Length: 479 100.0 2.8E-33 1.7E-36 199.0 33.5 459 15-535 1-475 (479) 13 protein:vir:2500 Length: 501 # 100.0 1.2E-32 7.4E-36 195.6 36.0 469 1-535 1-501 (501) 14 protein:vir:78227 Length: 480 100.0 7.7E-33 4.7E-36 196.7 34.8 453 32-535 1-479 (480) 15 protein:vir:78537 Length: 480 100.0 1.1E-32 7.1E-36 195.7 35.0 454 32-535 1-480 (480) 16 protein:vir:93747 Length: 472 100.0 1.1E-31 6.6E-35 190.4 40.0 454 18-533 1-472 (472) 17 protein:vir:94805 Length: 492 100.0 6.5E-32 4E-35 191.6 37.0 469 1-533 1-492 (492) 18 protein:vir:104082 Length: 485 100.0 6.7E-32 4.1E-35 191.5 37.0 450 25-529 1-485 (485) 19 protein:vir:7768 Length: 484 # 100.0 6.9E-32 4.3E-35 191.4 36.3 450 28-534 1-484 (484) 20 protein:vir:105292 Length: 478 100.0 2.4E-31 1.5E-34 188.5 39.0 435 32-532 1-478 (478) 21 protein:vir:98444 Length: 434 100.0 7.1E-32 4.4E-35 191.3 35.8 416 69-526 1-434 (434) 22 protein:vir:107112 Length: 478 100.0 3.4E-31 2.1E-34 187.6 39.2 462 1-531 1-478 (478) 23 protein:vir:79043 Length: 479 100.0 1.6E-31 9.9E-35 189.4 37.3 460 1-521 1-479 (479) 24 protein:vir:106639 Length: 481 100.0 8.7E-31 5.4E-34 185.4 40.6 456 1-534 1-481 (481) 25 protein:vir:95113 Length: 474 100.0 1.1E-30 6.8E-34 184.9 40.6 444 1-533 1-474 (474) 26 protein:vir:3964 Length: 453 # 100.0 2.6E-31 1.6E-34 188.2 37.2 439 1-522 1-453 (453) 27 protein:vir:97336 Length: 492 100.0 2.7E-31 1.6E-34 188.2 37.0 469 1-533 1-492 (492) 28 protein:vir:7987 Length: 456 # 100.0 1.5E-31 9.1E-35 189.6 34.0 435 28-517 1-456 (456) 29 protein:vir:2427 Length: 485 # 100.0 2.7E-31 1.7E-34 188.2 35.4 458 20-533 1-485 (485) 30 protein:vir:2341 Length: 488 # 100.0 2.6E-31 1.6E-34 188.3 35.2 453 18-529 1-488 (488) 31 protein:vir:99522 Length: 470 100.0 7.1E-31 4.4E-34 185.9 37.6 441 1-523 1-470 (470) 32 protein:vir:96839 Length: 474 100.0 1.7E-30 1E-33 183.8 39.1 434 32-525 1-474 (474) 33 protein:vir:1236 Length: 483 # 100.0 3E-30 1.9E-33 182.4 39.9 464 1-533 1-483 (483) 34 protein:vir:4223 Length: 486 # 100.0 7.5E-31 4.7E-34 185.7 35.9 456 21-534 1-486 (486) 35 protein:vir:99916 Length: 504 100.0 1.1E-30 7.1E-34 184.7 36.8 457 21-535 1-504 (504) 36 protein:vir:95806 Length: 440 100.0 3.1E-30 1.9E-33 182.4 38.9 420 34-520 1-440 (440) 37 protein:vir:105889 Length: 474 100.0 7.2E-30 4.4E-33 180.4 39.6 446 6-528 1-474 (474) 38 protein:vir:94101 Length: 474 100.0 7.2E-30 4.4E-33 180.4 39.6 446 6-528 1-474 (474) 39 protein:vir:94498 Length: 474 100.0 8.4E-30 5.2E-33 180.0 39.9 443 1-531 1-474 (474) 40 protein:vir:97447 Length: 474 100.0 8.4E-30 5.2E-33 180.0 39.9 443 1-531 1-474 (474) 41 protein:vir:9306 Length: 511 # 100.0 8.2E-30 5.1E-33 180.1 39.0 478 2-535 1-509 (511) 42 protein:vir:9871 Length: 429 # 100.0 4.7E-30 2.9E-33 181.4 36.9 417 32-520 1-429 (429) 43 protein:vir:96240 Length: 511 100.0 1.8E-29 1.1E-32 178.1 39.4 477 2-530 1-511 (511) 44 protein:vir:99781 Length: 511 100.0 1.9E-29 1.2E-32 178.0 39.5 477 2-532 1-511 (511) 45 protein:vir:97171 Length: 512 100.0 1.6E-29 1E-32 178.4 38.9 475 1-535 1-512 (512) 46 protein:vir:103951 Length: 511 100.0 3.1E-29 1.9E-32 176.9 39.9 477 2-530 1-511 (511) 47 protein:vir:96366 Length: 511 100.0 2E-29 1.3E-32 177.9 38.7 477 2-535 1-511 (511) 48 protein:vir:78805 Length: 511 100.0 2E-29 1.3E-32 177.9 38.7 477 2-535 1-511 (511) 49 protein:vir:96179 Length: 468 100.0 2.5E-29 1.5E-32 177.4 39.1 447 1-532 1-468 (468) 50 protein:vir:9751 Length: 422 # 100.0 1.3E-30 8E-34 184.4 32.0 400 32-502 1-422 (422) 51 protein:vir:95899 Length: 474 100.0 3.4E-29 2.1E-32 176.7 39.2 457 12-528 1-474 (474) 52 protein:vir:96266 Length: 474 100.0 3.4E-29 2.1E-32 176.7 39.2 457 12-528 1-474 (474) 53 protein:vir:8184 Length: 474 # 100.0 3.5E-30 2.2E-33 182.0 33.0 439 17-515 1-474 (474) 54 protein:vir:9568 Length: 410 # 100.0 9.1E-30 5.6E-33 179.8 34.7 392 42-509 1-410 (410) 55 protein:vir:102330 Length: 451 100.0 1.6E-29 1E-32 178.4 35.4 436 28-519 1-451 (451) 56 protein:vir:96494 Length: 501 100.0 1.4E-28 8.6E-32 173.3 40.2 469 1-534 1-501 (501) 57 protein:vir:733 Length: 453 # 100.0 4.3E-29 2.7E-32 176.1 36.7 442 1-523 1-453 (453) 58 protein:vir:94742 Length: 409 100.0 5E-30 3.1E-33 181.2 31.6 389 32-486 1-409 (409) 59 protein:vir:3609 Length: 452 # 100.0 8.3E-29 5.1E-32 174.5 37.6 436 1-522 1-452 (452) 60 protein:vir:9922 Length: 489 # 100.0 1.4E-28 8.9E-32 173.2 38.3 454 1-525 1-489 (489) 61 protein:vir:105461 Length: 470 100.0 1.1E-28 7.1E-32 173.8 37.5 447 8-522 1-470 (470) 62 protein:vir:80680 Length: 441 100.0 6.1E-29 3.8E-32 175.3 35.2 420 32-520 1-441 (441) 63 protein:vir:102950 Length: 471 100.0 1.9E-28 1.2E-31 172.6 37.8 447 3-522 1-471 (471) 64 protein:vir:102239 Length: 527 100.0 1.1E-29 6.9E-33 179.3 28.9 475 1-535 1-523 (527) 65 protein:vir:101494 Length: 527 100.0 1.1E-29 6.9E-33 179.3 28.9 475 1-535 1-523 (527) 66 protein:vir:1634 Length: 409 # 100.0 8.9E-29 5.5E-32 174.4 32.0 389 32-486 1-409 (409) 67 protein:vir:4898 Length: 502 # 100.0 1.1E-27 6.5E-31 168.5 37.6 467 1-531 1-502 (502) 68 protein:vir:2732 Length: 501 # 100.0 2.8E-27 1.7E-30 166.2 38.8 469 1-535 1-501 (501) 69 protein:vir:94546 Length: 506 100.0 6.2E-27 3.9E-30 164.2 39.4 454 1-524 1-506 (506) 70 protein:vir:7430 Length: 563 # 99.9 1.3E-26 8E-30 162.5 32.4 483 1-535 1-548 (563) 71 protein:vir:78083 Length: 537 99.9 5.6E-25 3.5E-28 153.5 41.3 464 12-535 1-535 (537) 72 protein:vir:80959 Length: 499 99.9 4.9E-21 3.1E-24 131.9 42.6 464 1-520 1-499 (499) 73 protein:vir:38 Length: 496 # N 99.9 2E-20 1.2E-23 128.6 41.9 456 1-520 1-496 (496) 74 protein:vir:1587 Length: 508 # 99.9 5E-20 3.1E-23 126.4 40.4 462 1-520 4-508 (508) 75 protein:vir:3028 Length: 500 # 99.8 4.4E-19 2.7E-22 121.2 40.9 439 46-516 1-500 (500) 76 protein:vir:9815 Length: 500 # 99.8 4.4E-19 2.7E-22 121.2 40.9 439 46-516 1-500 (500) 77 protein:vir:79703 Length: 505 99.8 3E-18 1.9E-21 116.6 40.3 460 6-518 1-505 (505) 78 protein:vir:4782 Length: 522 # 99.8 2.7E-17 1.7E-20 111.4 41.2 448 46-530 1-522 (522) 79 protein:vir:98883 Length: 517 99.8 1.4E-17 8.6E-21 113.0 39.5 462 1-532 4-517 (517) 80 protein:vir:78907 Length: 518 99.8 1.3E-16 8E-20 107.7 38.9 447 26-528 1-518 (518) 81 protein:vir:80040 Length: 461 98.7 6.8E-08 4.2E-11 59.9 28.1 428 32-513 1-461 (461) 82 protein:vir:93630 Length: 776 98.7 8.6E-08 5.4E-11 59.3 28.5 496 1-535 1-676 (776) 83 protein:vir:389 Length: 530 # 98.7 9.4E-08 5.8E-11 59.1 34.6 443 20-530 1-530 (530) 84 protein:vir:79538 Length: 502 98.6 2.1E-07 1.3E-10 57.2 36.9 440 32-533 1-502 (502) 85 protein:vir:95449 Length: 584 98.6 1.2E-07 7.2E-11 58.6 22.1 461 1-510 1-584 (584) 86 protein:vir:2198 Length: 536 # 98.6 2.7E-07 1.7E-10 56.6 28.9 459 32-533 1-536 (536) 87 protein:vir:107742 Length: 537 98.5 4.3E-07 2.7E-10 55.5 27.0 459 1-533 4-537 (537) 88 protein:vir:3420 Length: 533 # 98.5 4.8E-07 3E-10 55.2 35.6 442 18-527 1-533 (533) 89 protein:vir:3361 Length: 535 # 98.4 6.1E-07 3.8E-10 54.7 29.3 455 32-535 1-532 (535) 90 protein:vir:10321 Length: 495 98.4 7.1E-07 4.4E-10 54.3 37.3 441 30-531 1-495 (495) 91 protein:vir:10447 Length: 536 98.4 7.2E-07 4.5E-10 54.3 28.9 459 32-533 1-536 (536) 92 protein:vir:94599 Length: 641 98.4 9.7E-07 6E-10 53.5 23.7 475 28-535 1-619 (641) 93 protein:vir:8883 Length: 543 # 98.3 1.5E-06 9.4E-10 52.5 30.7 464 32-535 1-541 (543) 94 protein:vir:1538 Length: 535 # 98.3 1.6E-06 1E-09 52.3 29.6 457 32-532 1-535 (535) 95 protein:vir:96738 Length: 505 98.1 4.6E-06 2.8E-09 49.9 38.3 452 1-535 1-504 (505) 96 protein:vir:5249 Length: 437 # 98.1 5.3E-06 3.3E-09 49.5 26.7 407 32-535 1-435 (437) 97 protein:vir:79647 Length: 435 98.0 6.2E-06 3.8E-09 49.1 23.5 403 28-519 1-435 (435) 98 protein:vir:95542 Length: 548 98.0 8.5E-06 5.3E-09 48.4 31.9 447 32-535 1-510 (548) 99 protein:vir:7017 Length: 515 # 97.8 1.5E-05 9.3E-09 47.0 29.3 443 32-526 1-515 (515) 100 protein:vir:6382 Length: 553 # 97.7 2.3E-05 1.4E-08 46.0 34.5 459 1-535 1-553 (553) 101 protein:vir:103860 Length: 528 97.7 2.5E-05 1.6E-08 45.8 32.9 422 1-535 1-448 (528) 102 protein:vir:94709 Length: 522 97.6 3.8E-05 2.4E-08 44.8 30.4 449 32-534 1-522 (522) 103 protein:vir:99672 Length: 532 97.6 3.9E-05 2.4E-08 44.7 31.8 458 32-533 1-532 (532) 104 protein:vir:108215 Length: 469 97.6 4.1E-05 2.5E-08 44.7 32.8 432 1-535 1-465 (469) 105 protein:vir:95315 Length: 559 97.6 4.2E-05 2.6E-08 44.6 36.4 457 32-534 1-559 (559) 106 protein:vir:7321 Length: 556 # 97.6 4.6E-05 2.9E-08 44.3 32.5 456 32-533 1-556 (556) 107 protein:vir:80165 Length: 651 97.5 4.8E-05 3E-08 44.3 31.9 484 1-535 1-634 (651) 108 protein:vir:96988 Length: 516 97.5 4.8E-05 3E-08 44.3 25.9 441 32-528 1-516 (516) 109 protein:vir:3843 Length: 397 # 97.5 5.3E-05 3.3E-08 44.0 28.2 384 28-532 1-397 (397) 110 protein:vir:99563 Length: 862 97.5 5.7E-05 3.5E-08 43.9 26.9 470 1-535 39-579 (862) 111 protein:vir:105619 Length: 772 97.5 6E-05 3.7E-08 43.7 32.5 480 1-535 1-650 (772) 112 protein:vir:100039 Length: 522 97.5 6.3E-05 3.9E-08 43.6 30.4 442 32-530 1-522 (522) 113 protein:vir:94049 Length: 532 97.4 7.2E-05 4.5E-08 43.3 28.6 450 1-535 23-531 (532) 114 protein:vir:96068 Length: 765 97.4 7.5E-05 4.7E-08 43.2 29.3 457 1-535 37-539 (765) 115 protein:vir:102668 Length: 547 97.2 0.00012 7.4E-08 42.1 32.7 450 35-535 1-546 (547) 116 protein:vir:78696 Length: 542 97.2 0.00014 8.7E-08 41.7 30.8 445 32-535 1-540 (542) 117 protein:vir:99232 Length: 526 97.2 0.00014 8.9E-08 41.7 33.2 418 1-535 1-448 (526) 118 protein:vir:78161 Length: 355 97.2 0.00015 9.3E-08 41.6 25.4 309 208-535 1-353 (355) 119 protein:vir:104437 Length: 714 97.1 0.00016 9.8E-08 41.4 33.5 474 18-535 1-627 (714) 120 protein:vir:105641 Length: 516 97.1 0.00019 1.2E-07 41.0 26.8 437 28-526 1-516 (516) 121 protein:vir:8846 Length: 705 # 97.0 0.00022 1.4E-07 40.7 24.7 469 1-535 1-611 (705) 122 protein:vir:100920 Length: 725 97.0 0.00023 1.5E-07 40.5 23.3 472 32-535 1-606 (725) 123 protein:vir:104338 Length: 422 97.0 0.00024 1.5E-07 40.4 25.0 386 32-513 1-422 (422) 124 protein:vir:1785 Length: 555 # 96.9 0.00025 1.6E-07 40.3 27.7 446 32-535 1-555 (555) 125 protein:vir:94572 Length: 535 96.9 0.00025 1.6E-07 40.3 31.4 453 32-532 1-535 (535) 126 protein:vir:79063 Length: 491 96.9 0.00026 1.6E-07 40.2 32.3 405 12-535 1-419 (491) 127 protein:vir:107662 Length: 427 96.8 0.00031 1.9E-07 39.8 22.6 397 35-522 1-427 (427) 128 protein:vir:99853 Length: 488 96.8 0.00036 2.2E-07 39.5 31.1 387 35-535 1-408 (488) 129 protein:vir:107880 Length: 491 96.7 0.00037 2.3E-07 39.4 30.3 405 12-535 1-419 (491) 130 protein:vir:103765 Length: 549 96.7 0.00041 2.5E-07 39.2 30.9 456 32-535 1-546 (549) 131 protein:vir:79772 Length: 648 96.6 0.00045 2.8E-07 38.9 33.8 449 1-535 1-513 (648) 132 protein:vir:103330 Length: 517 96.6 0.00049 3E-07 38.7 33.3 439 30-530 1-517 (517) 133 protein:vir:81072 Length: 432 96.5 0.00053 3.3E-07 38.5 26.6 397 32-535 1-428 (432) 134 protein:vir:102855 Length: 432 96.5 0.00058 3.6E-07 38.3 31.2 403 46-535 1-432 (432) 135 protein:vir:107605 Length: 432 96.5 0.00058 3.6E-07 38.3 31.2 403 46-535 1-432 (432) 136 protein:vir:105002 Length: 432 96.5 0.00058 3.6E-07 38.3 31.2 403 46-535 1-432 (432) 137 protein:vir:77597 Length: 725 96.5 0.0006 3.7E-07 38.2 28.3 476 32-535 1-627 (725) 138 protein:vir:1884 Length: 424 # 96.4 0.00064 4E-07 38.1 26.2 400 32-527 1-424 (424) 139 protein:vir:79233 Length: 526 96.3 0.00072 4.4E-07 37.8 34.8 421 1-535 1-447 (526) 140 protein:vir:3868 Length: 417 # 96.2 0.00083 5.1E-07 37.5 24.4 393 1-533 3-417 (417) 141 protein:vir:7407 Length: 392 # 96.1 0.00094 5.9E-07 37.2 28.6 372 30-522 1-392 (392) 142 protein:vir:97060 Length: 432 96.1 0.00097 6E-07 37.1 25.1 399 22-528 1-432 (432) 143 protein:vir:189 Length: 424 # 96.1 0.001 6.4E-07 37.0 26.3 399 32-527 1-424 (424) 144 protein:vir:1266 Length: 416 # 96.1 0.001 6.4E-07 36.9 27.0 398 1-535 1-415 (416) 145 protein:vir:78942 Length: 510 95.9 0.0014 8.4E-07 36.3 30.5 430 32-520 1-510 (510) 146 protein:vir:102080 Length: 429 95.6 0.0017 1.1E-06 35.7 31.1 402 26-535 1-429 (429) 147 protein:vir:4952 Length: 386 # 95.5 0.0019 1.2E-06 35.5 31.8 375 28-522 1-386 (386) 148 protein:vir:6322 Length: 510 # 95.5 0.0019 1.2E-06 35.5 31.5 427 32-535 1-510 (510) 149 protein:vir:1380 Length: 422 # 95.5 0.002 1.3E-06 35.4 27.8 402 28-530 1-422 (422) 150 protein:vir:4854 Length: 386 # 95.4 0.0022 1.4E-06 35.2 27.1 376 1-522 1-386 (386) 151 protein:vir:79511 Length: 448 95.3 0.0023 1.4E-06 35.1 26.9 403 1-535 1-438 (448) 152 protein:vir:345 Length: 663 # 94.8 0.0035 2.2E-06 34.0 20.1 437 32-535 1-546 (663) 153 protein:vir:9263 Length: 725 # 94.6 0.0039 2.4E-06 33.8 28.3 474 32-535 1-606 (725) 154 protein:vir:1023 Length: 392 # 94.5 0.0043 2.7E-06 33.5 28.2 379 28-522 1-392 (392) 155 protein:vir:3989 Length: 392 # 94.5 0.0043 2.7E-06 33.5 28.2 379 28-522 1-392 (392) 156 protein:vir:5737 Length: 419 # 94.4 0.0044 2.7E-06 33.5 23.9 389 26-522 1-419 (419) 157 protein:vir:101648 Length: 518 94.3 0.0049 3.1E-06 33.2 29.3 411 22-535 1-444 (518) 158 protein:vir:7853 Length: 518 # 94.2 0.0051 3.1E-06 33.2 28.9 411 22-535 1-444 (518) 159 protein:vir:108295 Length: 711 94.1 0.0054 3.4E-06 33.0 37.3 487 1-535 1-632 (711) 160 protein:vir:2764 Length: 714 # 94.0 0.0056 3.5E-06 32.9 37.3 465 32-535 1-627 (714) 161 protein:vir:9950 Length: 714 # 94.0 0.0056 3.5E-06 32.9 37.3 465 32-535 1-627 (714) 162 protein:vir:817 Length: 714 # 94.0 0.0056 3.5E-06 32.9 37.3 465 32-535 1-627 (714) 163 protein:vir:3296 Length: 714 # 94.0 0.0056 3.5E-06 32.9 37.3 465 32-535 1-627 (714) 164 protein:vir:10117 Length: 714 94.0 0.0056 3.5E-06 32.9 37.3 465 32-535 1-627 (714) 165 protein:vir:80211 Length: 514 93.6 0.0071 4.4E-06 32.4 29.4 430 32-532 1-514 (514) 166 protein:vir:8418 Length: 409 # 93.6 0.0071 4.4E-06 32.3 29.5 388 1-535 1-408 (409) 167 protein:vir:95254 Length: 488 93.5 0.0072 4.5E-06 32.3 30.4 436 32-535 1-484 (488) 168 protein:vir:105520 Length: 706 93.5 0.0073 4.6E-06 32.3 31.2 481 32-535 1-620 (706) 169 protein:vir:1986 Length: 512 # 93.5 0.0074 4.6E-06 32.3 31.2 424 1-535 1-449 (512) 170 protein:vir:105429 Length: 708 93.5 0.0075 4.6E-06 32.2 32.3 477 32-535 1-616 (708) 171 protein:vir:10362 Length: 432 93.3 0.0082 5.1E-06 32.0 28.2 396 22-535 1-428 (432) 172 protein:vir:98816 Length: 446 93.1 0.0086 5.3E-06 31.9 27.2 391 30-489 1-446 (446) 173 protein:vir:77981 Length: 448 93.1 0.0089 5.5E-06 31.8 24.1 410 1-535 1-439 (448) 174 protein:vir:3139 Length: 599 # 92.9 0.0097 6E-06 31.6 22.7 466 1-516 1-599 (599) 175 protein:vir:93610 Length: 454 92.2 0.012 7.6E-06 31.1 33.4 407 32-535 1-445 (454) 176 protein:vir:81095 Length: 416 91.9 0.014 8.6E-06 30.8 29.2 401 28-533 1-416 (416) 177 protein:vir:4598 Length: 416 # 91.9 0.014 8.6E-06 30.8 29.2 401 28-533 1-416 (416) 178 protein:vir:100882 Length: 383 91.6 0.015 9.5E-06 30.5 28.3 366 28-520 1-383 (383) 179 protein:vir:4194 Length: 540 # 91.4 0.016 9.9E-06 30.4 32.4 420 27-535 1-468 (540) 180 protein:vir:98506 Length: 555 91.3 0.017 1E-05 30.3 36.1 457 32-532 1-555 (555) 181 protein:vir:107822 Length: 555 91.3 0.017 1E-05 30.3 36.1 457 32-532 1-555 (555) 182 protein:vir:107404 Length: 555 91.3 0.017 1E-05 30.3 36.1 457 32-532 1-555 (555) 183 protein:vir:4337 Length: 434 # 90.8 0.019 1.2E-05 30.0 24.3 408 1-534 1-434 (434) 184 protein:vir:4509 Length: 424 # 90.8 0.019 1.2E-05 30.0 25.7 389 45-520 1-424 (424) 185 protein:vir:104259 Length: 403 90.6 0.02 1.2E-05 29.9 25.4 377 28-535 1-403 (403) 186 protein:vir:9359 Length: 348 # 90.6 0.02 1.3E-05 29.9 23.2 333 106-524 1-348 (348) 187 protein:vir:63755 Length: 547 89.9 0.024 1.5E-05 29.5 32.6 447 1-535 4-538 (547) 188 protein:vir:79984 Length: 441 89.1 0.028 1.8E-05 29.1 31.6 417 1-533 1-441 (441) 189 protein:vir:9408 Length: 441 # 89.1 0.028 1.8E-05 29.1 31.6 417 1-533 1-441 (441) 190 protein:vir:105064 Length: 421 89.1 0.029 1.8E-05 29.0 26.5 397 1-530 1-421 (421) 191 protein:vir:4156 Length: 542 # 88.2 0.034 2.1E-05 28.7 26.6 408 32-535 1-473 (542) 192 protein:vir:98396 Length: 441 87.3 0.04 2.5E-05 28.3 30.0 407 32-535 1-440 (441) 193 protein:vir:1431 Length: 419 # 87.0 0.042 2.6E-05 28.2 26.2 392 16-535 1-416 (419) 194 protein:vir:81152 Length: 411 86.4 0.046 2.8E-05 27.9 26.9 381 28-531 1-411 (411) 195 protein:vir:4828 Length: 382 # 84.8 0.058 3.6E-05 27.4 28.4 372 28-522 1-382 (382) 196 protein:vir:960 Length: 413 # 83.8 0.065 4E-05 27.1 28.4 384 1-532 4-413 (413) 197 protein:vir:100150 Length: 437 82.0 0.081 5E-05 26.6 31.7 397 32-535 1-432 (437) 198 protein:vir:96579 Length: 576 81.4 0.086 5.3E-05 26.4 30.4 447 1-535 1-551 (576) 199 protein:vir:102118 Length: 409 81.4 0.086 5.3E-05 26.4 31.4 383 56-532 1-409 (409) 200 protein:vir:6240 Length: 457 # 79.7 0.1 6.3E-05 26.0 29.6 417 28-535 1-455 (457) 201 protein:vir:8317 Length: 409 # 78.9 0.11 6.8E-05 25.8 24.8 382 1-520 1-409 (409) 202 protein:vir:2683 Length: 412 # 78.0 0.12 7.3E-05 25.7 26.6 393 1-535 1-410 (412) 203 protein:vir:3520 Length: 720 # 77.0 0.13 8E-05 25.5 25.1 476 32-535 1-629 (720) 204 protein:vir:172 Length: 708 # 75.9 0.14 8.8E-05 25.2 29.3 478 32-535 1-620 (708) 205 protein:vir:3153 Length: 467 # 73.6 0.17 0.0001 24.8 30.4 385 89-535 1-444 (467) 206 protein:vir:102727 Length: 945 72.0 0.19 0.00012 24.6 32.1 423 1-535 64-531 (945) 207 protein:vir:96980 Length: 409 71.5 0.19 0.00012 24.5 27.3 392 32-535 1-407 (409) 208 protein:vir:4995 Length: 384 # 70.2 0.21 0.00013 24.3 22.9 373 28-522 1-384 (384) 209 protein:vir:9702 Length: 406 # 70.1 0.21 0.00013 24.3 30.3 382 32-531 1-406 (406) 210 protein:vir:94426 Length: 409 69.9 0.22 0.00013 24.2 25.9 393 32-535 1-407 (409) 211 protein:vir:101647 Length: 460 69.9 0.22 0.00013 24.2 30.2 393 32-522 1-460 (460) 212 protein:vir:1082 Length: 359 # 67.5 0.25 0.00016 23.9 26.7 343 32-483 1-359 (359) 213 protein:vir:6210 Length: 394 # 64.4 0.3 0.00019 23.4 21.8 373 26-535 1-394 (394) 214 protein:vir:80644 Length: 551 59.1 0.4 0.00025 22.8 31.9 447 1-535 1-542 (551) 215 protein:vir:95821 Length: 763 56.0 0.47 0.00029 22.4 35.0 465 8-535 1-629 (763) 216 protein:vir:80333 Length: 419 54.8 0.49 0.00031 22.3 28.5 387 1-535 1-410 (419) 217 protein:vir:4454 Length: 414 # 54.4 0.5 0.00031 22.2 28.2 393 28-533 1-414 (414) 218 protein:vir:93943 Length: 409 52.8 0.54 0.00034 22.0 26.3 385 45-535 1-407 (409) 219 protein:vir:483 Length: 413 # 49.3 0.64 0.0004 21.6 29.7 391 32-533 1-413 (413) 220 protein:vir:1326 Length: 457 # 47.0 0.71 0.00044 21.4 30.2 418 28-535 1-450 (457) 221 protein:vir:81218 Length: 423 44.4 0.81 0.0005 21.1 27.7 396 28-524 1-423 (423) 222 protein:vir:100187 Length: 385 39.5 1 0.00063 20.5 30.8 364 28-535 1-385 (385) 223 protein:vir:78641 Length: 278 34.6 1.3 0.0008 20.0 22.7 265 106-451 1-278 (278) 224 protein:vir:4089 Length: 395 # 33.1 1.4 0.00086 19.8 21.6 376 46-535 1-394 (395) 225 protein:vir:105782 Length: 449 32.4 1.4 0.00089 19.7 22.9 401 32-533 1-449 (449) 226 protein:vir:95599 Length: 563 31.6 1.5 0.00092 19.6 29.2 417 32-535 1-539 (563) 227 protein:vir:99312 Length: 563 31.6 1.5 0.00092 19.6 29.2 417 32-535 1-539 (563) 228 protein:vir:80796 Length: 574 27.4 1.8 0.0011 19.1 32.9 431 1-535 27-537 (574) 229 protein:vir:95378 Length: 406 23.4 2.3 0.0014 18.6 23.9 378 28-532 1-406 (406) 230 protein:vir:94666 Length: 723 21.5 2.6 0.0016 18.3 29.0 395 52-535 1-436 (723) No 1 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=100.00 E-value=1.2e-190 Score=1061.88 Aligned_cols=535 Identities=100% Similarity=1.468 Sum_probs=525.8 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |||||||||||+|||++||||+||++||||+||||+++||+|.+++++|++|+|||+|+++||++|++|||+++.+++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~~~~~~ 80 (535) T protein:vir:80 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) T ss_pred CCcchhhhhhhhhhhcccCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCCCCCcccCCc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEee Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDY 160 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~ 160 (535) |++++|++||+||+|+|+|++||++|+|++|+|+|++++|+.|+.|++|||++|++|++|++++++++|.+|+||||||| T Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~vfrk~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~ 160 (535) T protein:vir:80 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDY 160 (535) T ss_pred CCHHHHHHHHhhccCCChhHHHHHHHhchhhcCCcceeccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEee Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEE Q lcl|Aclame:pro 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQV 240 (535) Q Consensus 161 p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v 240 (535) |..+..+|+||+++.++|||+++|+|++||||+++++||+++|++|||+|++.+++|+|+.+.++|||||+++.+|.|++ T Consensus 161 P~~~~~~t~ade~~~~~rPy~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~~G~y~v 240 (535) T protein:vir:80 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQV 240 (535) T ss_pred cCCCCcccHHHHHhcCCCcEEEEechhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecCCceEEE Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred EEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeE Q lcl|Aclame:pro 241 ERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAF 320 (535) Q Consensus 241 ~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~ 320 (535) ++|+++.++.......++++++.++|+|++|||||+++.++++.+++|||++||+||++|||++|||++|+|++++|++| T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~il~~~~~P~l~ 320 (535) T protein:vir:80 241 ERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAF 320 (535) T ss_pred EEEEeecCCccccccceeecccCCCcccCeeEEEEeecCCCCCCCCccchHHHHHHHHHHhhchhHHHHHHHHhcCceee Confidence 99999888888888888999999999999999999999999999999999999999999999999999999999999999 Q ss_pred eeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHH Q lcl|Aclame:pro 321 FTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGEAQQEE 400 (535) Q Consensus 321 ~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a~~~~ 400 (535) ++|+++++.++..++.+|.+|++++|.+|++++++|+|++|+++++++|+++++||+++|++++..+++++|++++++++ T Consensus 321 i~G~~~~~~~~~~~~~~i~iG~~~~~~lP~~~~~~~~e~~~~~~a~~~l~~~e~qM~~lGa~ll~~~~~~~Ta~~a~~~~ 400 (535) T protein:vir:80 321 FTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGEAQQEE 400 (535) T ss_pred eecCchhhhhcCCCCcceEecCcccccCCCCCCcceeeeccchhHHHHHHHHHHHHHHHHHHhhccCcccccHHHHHHHH Confidence 99999999888888889999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC Q lcl|Aclame:pro 401 ASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRA 480 (535) Q Consensus 401 ~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~ 480 (535) ++++|+|+++|.++++|++++|+|||+|+|.+.+++++.|++|+||...++++++++++++++++|.||++|++++|+|+ T Consensus 401 ~~~~S~L~~~a~~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~~~~all~~~~~G~Is~et~~~~L~r~ 480 (535) T protein:vir:80 401 ASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRA 480 (535) T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC Confidence 99999999999999999999999999999988888899999999999999999999999999999999999999999999 Q ss_pred CCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 481 GVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 481 gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ||++++++++|++.+|+.|..+.+..++..+|.++|+++.++.+||+||+|+||| T Consensus 481 gvl~~~~~~eee~~ri~~E~~~~~~~~g~~~d~~~~g~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:80 481 GVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) T ss_pred CCCCcccchHHHHHHHHhhhhhccccCCCCCCCCCCCCCcCcccCCccccccCCC Confidence 9999999999999999999999999999999999999999999999999999999 No 2 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=100.00 E-value=2.1e-155 Score=868.64 Aligned_cols=489 Identities=46% Similarity=0.768 Sum_probs=446.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) ||||+++||+|.+++++|++|+|||+|+++||++|++|||+++.+++++|++++|++|++||+|+|++++||++|+|++| T Consensus 1 m~~V~~~hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~l~G~vf 80 (501) T protein:vir:95 1 MPNVSFIRPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFGLVGQVF 80 (501) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHHHhhhhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC--cccchHHHHhccCCcEEEEechhhh Q lcl|Aclame:pro 112 SRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG--RPVTVLEQKLGLYRPTITLVHPTSI 189 (535) Q Consensus 112 ~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~--~~~t~ad~~~~~~rPy~~~~~~~~I 189 (535) +|+|++++|+.++.|++|||++|++|++|++++++++|.+|+||||||||..+ ..+|+||+++.++|||+++|+|++| T Consensus 81 ~k~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~rPy~~~~~~~~I 160 (501) T protein:vir:95 81 MRDPVVKVPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRIRPTLYVYSPTEI 160 (501) T ss_pred cCCcceeCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccCCcEEEEecHhhh Confidence 99999999999999999999999999999999999999999999999999764 4689999999999999999999999 Q ss_pred hcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCC---------ccccccceee Q lcl|Aclame:pro 190 INWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEE---------MYYSYSKHVP 260 (535) Q Consensus 190 i~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~---------~~~~~~~~~~ 260 (535) |||+++++||+++|++|||+|++.+++|+|+.+.++|||||+++.+|.|++++|+....+. ......++.+ T Consensus 161 inW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (501) T protein:vir:95 161 INWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIPKGNYQQYVVYKP 240 (501) T ss_pred cCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceecCCcccccceeee Confidence 9999999999999999999999999999999999999999999999999999999865432 2233456888 Q ss_pred eccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeee Q lcl|Aclame:pro 261 TDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHL 340 (535) Q Consensus 261 ~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~i 340 (535) ++.++++|++|||||+++.++++.++.|||++||+||++|||++|||++++|++++|++|++|+++++.++. .+.+|.+ T Consensus 241 ~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~~~~l~~~~~P~l~i~G~~~~~~~~~-~~~~i~~ 319 (501) T protein:vir:95 241 TDAQGKRLTEIPFMFIGSENNDSNPDNPNFYDLASLNMAHYRNSADYEESCYIVGQPTPVLIGLTEEWVTNV-LKGSVNF 319 (501) T ss_pred eccCCCcCCeeeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhHHHHHHHHcccceeeeeCCcccccccC-CCCceee Confidence 899999999999999999999999999999999999999999999999999999999999999999876554 3457999 Q ss_pred cCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 341 GSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRK 420 (535) Q Consensus 341 G~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~ 420 (535) |++++|.+|++++++|+|++|+++.+++|+++++||+.+|++++..+++++|++++..+++++||+|+++|.++++|+++ T Consensus 320 G~~~~~~lP~~~~~~~ie~~~~~i~~~~l~~l~~~m~~~Ga~ll~~~~~~~Ta~~~~~~~~~~~S~L~~~a~~le~al~~ 399 (501) T protein:vir:95 320 GSRGGIPLPVGADAKLLQASENTMLKEAMDTKERQMVALGAKLVEQKEVQRTATEAELEAASEGSTLSSATKNVSAAFEW 399 (501) T ss_pred cccccccCCCCCceeEEecChhhHHHHHHHHHHHHHHHHHHhhccCCccchhHHHHHHHHHHHhHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999 Q ss_pred HHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHH-Hhc Q lcl|Aclame:pro 421 ALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKA-TVE 499 (535) Q Consensus 421 ~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i-~~e 499 (535) +|+|||+|+|.. +++++|++|+||....+++++++++++++++|.||++|++++|+|+||+++++++++++-++ ..+ T Consensus 400 ~l~~~a~w~g~~--~~~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~v~~~~~~~e~e~i~~~~~~ 477 (501) T protein:vir:95 400 ALKWAARWVGQA--DSGVKFELNTDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLRKAGVATEDDSKAKEKIAKDTAE 477 (501) T ss_pred HHHHHHHHcCCC--CCceEEEEecccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCChhHHHHHHHHHhhhcC Confidence 999999999953 45688999999999999999999999999999999999999999999998877666544322 223 Q ss_pred hhhcccCCCcCCCCCCCcccccccc Q lcl|Aclame:pro 500 FIAKTAAAGKVGDAASGGTNKAKLN 524 (535) Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (535) ....+.++..+.++ .|++|..+.. T Consensus 478 ~~~~~~~~~~~~~~-~gg~~~~~~~ 501 (501) T protein:vir:95 478 AMALATPANVPGDG-SGGDNVGNSE 501 (501) T ss_pred cccccccCCCCCCC-cccccccCCC Confidence 33334444444443 3334333322 No 3 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=100.00 E-value=1.1e-146 Score=820.79 Aligned_cols=483 Identities=24% Similarity=0.348 Sum_probs=423.5 Q ss_pred CC-----CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 32 LP-----NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 32 M~-----~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) |+ ||+++||+|.+++++|++|+|||+|+++||++|++||||++ .|+++.|++||+||+|+|++++||++| T Consensus 1 m~~~~~~~v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~-----~E~~~~Y~~rl~rA~~~n~~~~tl~~l 75 (513) T protein:vir:97 1 MADKDPKSPATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQ-----EETDKGYQERLASAVLLNMVEQTLDTL 75 (513) T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCC-----CCCHHHHHHHHhcccCCChHHHHHHHH Confidence 65 48899999999999999999999999999999999999976 567788999999999999999999999 Q ss_pred hhhhhccccccc--cCHHHHH-HHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCc-----ccchHHHHhccCC Q lcl|Aclame:pro 107 MGQVFSRDPIRQ--LPPALEA-IVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGR-----PVTVLEQKLGLYR 178 (535) Q Consensus 107 ~G~lF~k~p~~~--~p~~l~~-l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~-----~~t~ad~~~~~~r 178 (535) +|++|+++|+++ +|+.++. |++|||++|++|++|++++++++|.+|+||||||||..+. ++|+||+++.++| T Consensus 76 ~G~vf~k~p~~~~~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~~~~r 155 (513) T protein:vir:97 76 SGKPFSEPIKLNEDVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRREGLR 155 (513) T ss_pred hhhhhhcCcccCcCchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHhhccC Confidence 999999999985 8999975 8899999999999999999999999999999999998653 6899999999999 Q ss_pred cEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccce Q lcl|Aclame:pro 179 PTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKH 258 (535) Q Consensus 179 Py~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~ 258 (535) ||+++|+|++||||++++++|+.+|++|||+|++.++ |+|+.+.++|||||+++ . +++|+....+.. ...++ T Consensus 156 Py~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~-Dgf~~~~~~q~rvL~~g---~--~~v~r~~~~~~~--~~~e~ 227 (513) T protein:vir:97 156 PYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQ-DGFAEVCKRRIRVLEPG---L--VQLWEPVKKSNA--QKEEW 227 (513) T ss_pred ceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeec-CCCcceEEEEEEEEeCc---e--EEEEEeecCCCc--cccce Confidence 9999999999999999999999999999999999876 56999999999999975 3 466766544332 34578 Q ss_pred eeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCccee Q lcl|Aclame:pro 259 VPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKV 338 (535) Q Consensus 259 ~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i 338 (535) ++++.++++|++|||||+++.++++.+++|||++||+||++|||++|||++|+|++++|++|++|+++++. .+| T Consensus 228 ~~~~~g~~~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l~~~G~~~~~~------~~i 301 (513) T protein:vir:97 228 ALADEWATGLNYVPLVTFYADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPILACSGASGEDS------DPV 301 (513) T ss_pred EEecCCCCcCCceeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhhHHHHHHhcccceeeeecCCcCCC------Cce Confidence 89999999999999999999999999999999999999999999999999999999999999999987652 369 Q ss_pred eecCcccccCCC-CCccceeecCcchhH--HHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 339 HLGSRAIIPLPQ-GATAGILQITPNSVP--FEAMTHKESQMIAMGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS 415 (535) Q Consensus 339 ~iG~~~~~~lp~-~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~ 415 (535) .+|++++|.+|+ +++++|+|++|+++. ++.|++|++||+++|++++..+++++|++++..++++++|+|+++|.+|+ T Consensus 302 ~iG~~~~~~lpe~~~~~~yie~~g~~i~~~~~~l~~le~qm~~~Ga~ll~~~~~~~Ta~a~~~~~~~~~S~L~~~a~~le 381 (513) T protein:vir:97 302 VVGPNKVLYNPDPAGRFYYVEHTGQAIAAGRTDLKDLEEQMAGYGAEFLKRKTGGQTATARALDSAEATSDLSAMTGLFE 381 (513) T ss_pred EeeccccccCCCCCCcceeeccCchhHHHHHHHHHHHHHHHHHHHHHhhccCCccccHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999996 899999999999986 57999999999999999999888999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHH Q lcl|Aclame:pro 416 MAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGK 495 (535) Q Consensus 416 ~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~ 495 (535) +|++++|+|||+|+|. ++++++|+||+||....+++++++++++++++|.||++|++++|+|+|||+++.+.+++.++ T Consensus 382 ~al~~~l~~~a~wlg~--~~~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~d~~~~~e~ 459 (513) T protein:vir:97 382 DALAQALDITADWLRL--GPNGGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVLPEDFDEDEDWEE 459 (513) T ss_pred HHHHHHHHHHHHHhCC--CCCccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccCCHHHHHHH Confidence 9999999999999985 34568899999999999999999999999999999999999999999999988775554444 Q ss_pred HHhchhhcc-------cCCCcCCCCCCCcccccccc------cccCCCCCCCC Q lcl|Aclame:pro 496 ATVEFIAKT-------AAAGKVGDAASGGTNKAKLN------NGNGGGNQAGN 535 (535) Q Consensus 496 i~~e~~~~~-------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 535 (535) +..++...+ .++..+.+.++++|++-+.. -|.||+|+.|. T Consensus 460 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (513) T protein:vir:97 460 LMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGEGGEGGGNPGGE 512 (513) T ss_pred HHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCC Confidence 433322111 12222223334444444433 34455555555 No 4 >protein:vir:95014 Length: 491 # NCBI annotation: structural protein # Family: family:all:584 # MgeID: mge:1547 # MgeName: KS7 # Cross-refs: genbank:acc:YP_224035;genbank:gi:62327322;genbank:GeneID:5176842 Probab=100.00 E-value=3.9e-145 Score=812.28 Aligned_cols=483 Identities=32% Similarity=0.489 Sum_probs=429.3 Q ss_pred CCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHH Q lcl|Aclame:pro 22 APPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTAR 101 (535) Q Consensus 22 ~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~ 101 (535) --...|=| .||+++||+|.+++++|++|+|||+|++ .+..++.|||+++.+ +++.+|++||+||+|+|++++ T Consensus 1 ~~~~~~~~---~~V~~~hp~y~a~~~~W~~ird~~~G~~-~~~~r~~yl~~~~~~----~~e~~Y~~rl~rA~~~n~~~~ 72 (491) T protein:vir:95 1 MLTANGQG---SGVKTKHREWLHYAPKWQKVRHALAGDL-VGYLRNVGLNEPDKA----YGEARQAEYEAGGIVYNFTRR 72 (491) T ss_pred CcccCCcc---CCCCccCHHHHHHHHHHHHHHHHhcCcc-hhhcccCCCcCCCCC----CCHHHHHHHHhcccCCChHHH Confidence 00001211 4799999999999999999999999964 455578999998642 456789999999999999999 Q ss_pred HHHHHhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEE Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTI 181 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~ 181 (535) ||++|+|++|+|+|++++|+.|+.|++|||++|++|++|++++++++|.+|+||||||||..+ +.|+||++++++|||+ T Consensus 73 tl~~l~G~vfrk~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~-~~T~Ade~~~~~rPy~ 151 (491) T protein:vir:95 73 TLSGMVGSVMRKEPEINIPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETA-AATAAEQNAGLLNPTI 151 (491) T ss_pred HHHHHhchhhcCCceeeccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHcCeEEEEEecCCCc-ccCHHHHHHhcCCcEE Confidence 999999999999999999999999999999999999999999999999999999999999875 6899999999999999 Q ss_pred EEechhhhhcceeeecCCccceeEEEEEEEEee--cCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccccccee Q lcl|Aclame:pro 182 TLVHPTSIINWRTKLVGGKSVISLVVIQENVLA--QDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHV 259 (535) Q Consensus 182 ~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~--~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~ 259 (535) ++|+|++||||+++++||+++|++|||+|++.. ++|+|+.+.++|||||+++.||.|++++|+++..++.. ....++ T Consensus 152 ~~~~~~~IinW~~~~v~g~~~L~~v~l~E~~~~~d~~~~f~~~~~~qyRvL~l~~~g~~~~~v~r~~~~g~~~-~~~~~~ 230 (491) T protein:vir:95 152 AFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYHEPGNEFETKYGEQYRVLDIDTDGNYRQRLFRFDAEGGAQ-EEVVEI 230 (491) T ss_pred EEechhhhcCceeeeeCCceeeeEEEEEEeEEeecCCCCcccceEEEEEEEeecCCCceEEEEEEEcCCCcce-eeeeee Confidence 999999999999999999999999999998754 55899999999999999999999999999987655443 333455 Q ss_pred eeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCC---ccchhccCcc Q lcl|Aclame:pro 260 PTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTK---DWVEDVFKDF 336 (535) Q Consensus 260 ~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~---~~~~d~~~~~ 336 (535) .++.|+++|++|||||+++.++++.+++|||+|||+||++|||++|||++|+|++++|++|++|.++ ++.. ...+. T Consensus 231 ~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~~~G~d~~~~~~~~-~~~~~ 309 (491) T protein:vir:95 231 YPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGDNLTPQSFK-EANPN 309 (491) T ss_pred eecCCCcccCeeEEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCcccCcchhh-ccCcc Confidence 5678999999999999999999999999999999999999999999999999999999999999764 3333 33466 Q ss_pred eeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 337 KVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSM 416 (535) Q Consensus 337 ~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~ 416 (535) ++.+|++++|.+|++++++|+|++++++.++.|+++++||+.+||+++..+ +++|++++.++++++||+|+++|.++++ T Consensus 310 ~i~~g~~~~~~lP~~~~~~~ie~~~~~~~~~~l~~~e~qm~~~Ga~l~~~~-~~~Ta~~~~~~~~~~~S~L~~~a~~~e~ 388 (491) T protein:vir:95 310 GIKFGSRCGHNLGYGGSAQLIQAGENNLARQNMLDKEQQAIQIGAQLITPS-QQITAESARIQRGADTSVMATIARNVSQ 388 (491) T ss_pred eeEecCcCCcCCCCCCccceeecCcchHHHHHHHHHHHHHHHHHHHhccCC-cchhHHHHHHHHHHhhHHHHHHHHHHHH Confidence 899999999999999999999999999999999999999999999999765 5799999999999999999999999999 Q ss_pred HHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHH Q lcl|Aclame:pro 417 AFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKA 496 (535) Q Consensus 417 a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i 496 (535) |++++|+|||+|+|.. +++++.|++|+||....+++++++++++++++|.||++|++++|+|+||++ .++|+++++| T Consensus 389 al~~~l~~~a~w~G~~-~~~~v~i~~n~dF~~~~~~~~~~~all~~~~~G~is~~t~~~~L~~~~vl~--~~~e~~~~~i 465 (491) T protein:vir:95 389 AYTDALRWVAMMLGKP-EDSEVEFQLNMDFFLQPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTD--WTDEDILNAI 465 (491) T ss_pred HHHHHHHHHHHHcCCC-CCCceEEEeecccccccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC--ccHHHHHHHH Confidence 9999999999999964 457899999999999999999999999999999999999999999999984 4689999999 Q ss_pred HhchhhcccCC---CcCCCCCCCccc Q lcl|Aclame:pro 497 TVEFIAKTAAA---GKVGDAASGGTN 519 (535) Q Consensus 497 ~~e~~~~~~~~---~~~~~~~~~~~~ 519 (535) +.+..+.+..+ ++.++++.+-.+ T Consensus 466 e~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (491) T protein:vir:95 466 EDAPLPSGAVTQVAGEIPQAAQQQQE 491 (491) T ss_pred HhcCCCCCccccccccchhhhhhccC Confidence 99866554444 444443333222 No 5 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=100.00 E-value=2.7e-144 Score=807.70 Aligned_cols=485 Identities=32% Similarity=0.485 Sum_probs=422.7 Q ss_pred CCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHH Q lcl|Aclame:pro 22 APPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTAR 101 (535) Q Consensus 22 ~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~ 101 (535) --...|=| .||+++||+|.+++++|++|+|||+|++.++. +..|||+++.+ +++.+|++||+||+|+|+|++ T Consensus 1 ~~~~~~~~---~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~-r~~yl~~~~~~----~~e~~Y~~rl~rA~~~n~~~~ 72 (489) T protein:vir:78 1 MLTENGQG---SGVKTKHREWLHYAPKWQKVRHALAGELVSYL-RNVGLNEPDKA----YGEARQAEYEAGGIVYNFTRR 72 (489) T ss_pred CccCCCcc---CCCCccCHHHHHHHHHHHHHHHHhcCcccccc-cCCCCCCCCCC----CChHHHHHHHhccccCChHHH Confidence 00001211 47999999999999999999999999765444 56899987642 345679999999999999999 Q ss_pred HHHHHhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEE Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTI 181 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~ 181 (535) ||++|+|++|+|+|++++|+.|+.|++|||++|++|++|++++++++|.+|+||||||||..+ ++|+||++++++|||+ T Consensus 73 tl~~l~G~vfrk~p~~~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~-~~T~ade~~~~~rPy~ 151 (489) T protein:vir:78 73 TLSGMVGSVMRKEPEINIPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETG-AATAAEQNAGLLNPTI 151 (489) T ss_pred HHHHHhchhhcCCcceeccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCC-CcCHHHHHHhcCCcEE Confidence 999999999999999999999999999999999999999999999999999999999999865 7899999999999999 Q ss_pred EEechhhhhcceeeecCCccceeEEEEEEEEee--cCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccccccee Q lcl|Aclame:pro 182 TLVHPTSIINWRTKLVGGKSVISLVVIQENVLA--QDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHV 259 (535) Q Consensus 182 ~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~--~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~ 259 (535) ++|+|++||||+++++||+.+|++|||+|++.. ++|+|+.+.++|||||+++.||.|++++|++...+....... .+ T Consensus 152 ~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~~~~-~~ 230 (489) T protein:vir:78 152 AFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQEDVV-EI 230 (489) T ss_pred EEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccceee-EE Confidence 999999999999999999999999999998764 458999999999999999999999999999887665443332 34 Q ss_pred eeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccc--hhccCcce Q lcl|Aclame:pro 260 PTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWV--EDVFKDFK 337 (535) Q Consensus 260 ~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~--~d~~~~~~ 337 (535) .++.++++|++|||||+++.++++.+++|||+|||+||++|||++|||++++|++++|++|++|.++... .+...+.+ T Consensus 231 ~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~~~ 310 (489) T protein:vir:78 231 YPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAFKEANPNG 310 (489) T ss_pred eccCCCCccCeeeEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCccCCcccccccCccc Confidence 4578999999999999999999999999999999999999999999999999999999999999865321 22334678 Q ss_pred eeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 338 VHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 338 i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) +.+|++++|.+|++++++|+|++++++.+++|++|++||+++||+++..+ +++|+++++++++++||+|+++|.++++| T Consensus 311 i~~g~~~~~~lp~~~~~~~ie~~~~~~~r~~l~~le~qm~~lGa~l~~~~-~~~Ta~~~~~~~~~~~S~L~~~a~~~e~a 389 (489) T protein:vir:78 311 IKFGSRRGHNLGYGGSAQLIQAGENNLARQNMLDKEQQAIQIGAQLITPT-QQITAQSARIQRGADTSVMATIARNVSQA 389 (489) T ss_pred eeeCCcccccCCCCCCcceeccCcchHHHHHHHHHHHHHHHHhhhhccCC-cchhHHHHHHHHHHhhHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999754 58999999999999999999999999999 Q ss_pred HHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKAT 497 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~ 497 (535) ++++|+|||+|+|.. +++++.|++|+||....++++++++|++++++|.||++|++++|+|+||+++ ++++++++|+ T Consensus 390 l~~~l~~~a~w~G~~-~~~~~~i~~n~dF~~~~~d~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~--~~e~~~~ei~ 466 (489) T protein:vir:78 390 YTDALRWVAVMLGKP-EDTEVEFRLNMDFFLEPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDW--TDADIKDAVA 466 (489) T ss_pred HHHHHHHHHHHcCCC-CCCceEEEeecccCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCc--cHHHHHHHHh Confidence 999999999999964 5678999999999999999999999999999999999999999999999854 6788888888 Q ss_pred hchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 498 VEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 498 ~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) .+.... .....++-..+..+..+ T Consensus 467 ~~~~~~--~~~~~g~~~~~~q~~~~ 489 (489) T protein:vir:78 467 DQPLPV--ATEVQGEIPQSAQQQEK 489 (489) T ss_pred hcCCCc--ccCCcccCCCCcccccC Confidence 763211 11111221111111111 No 6 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=100.00 E-value=4.3e-137 Score=768.21 Aligned_cols=446 Identities=24% Similarity=0.376 Sum_probs=399.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) |+ |+++||+|.+++++|++|+|||+|+++||++|++||||++ .|++++|++||+||+|+|++++||++|+|++| T Consensus 1 m~-V~~~hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~-----~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~vf 74 (452) T protein:vir:94 1 MP-IETKHPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLS-----GQTDDMYNAYKQRALFYSITSKTLSALSGMVL 74 (452) T ss_pred CC-CCCcCHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCC-----CCCHHHHHHHHhhccCCchHHHHHHHHhchhh Confidence 99 9999999999999999999999999999999999999986 46678899999999999999999999999999 Q ss_pred ccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhc Q lcl|Aclame:pro 112 SRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIIN 191 (535) Q Consensus 112 ~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~ 191 (535) +|+|++++|+.++.+ ++|++|++|++|++++++++|.+|+||||||||+. +.|||++.|+|++||| T Consensus 75 ~k~p~~~~p~~l~~~--~~D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~------------g~rPy~~~~~~~~Ii~ 140 (452) T protein:vir:94 75 DQPPVITHPDAMSKY--FEDQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLT------------GGDPYISVYTTENILN 140 (452) T ss_pred cCCceecccHHHHHH--HhcccCCCHHHHHHHHHHHHHhcCeEEEEEeeccC------------CCceEEEEechhhhcC Confidence 999999999999998 67999999999999999999999999999999965 4589999999999999 Q ss_pred ceeeecCCccceeEEEEEEEEee--cCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccc Q lcl|Aclame:pro 192 WRTKLVGGKSVISLVVIQENVLA--QDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFK 269 (535) Q Consensus 192 w~~~~~~g~~~Lt~v~l~E~~~~--~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (535) |+++.+|| |++|+|||.+.. .+|+|+.+.++|||||+++ +|.|+|++|+.. ++..+...++.+++.++++|+ T Consensus 141 W~~~~~g~---l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~-~g~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~l~ 214 (452) T protein:vir:94 141 WEEDEDGR---LLMVVLREFYTVRDTADRYVQNIRVRYRCLELV-DGLLQITVHETQ--DGKVWELAKTSTIQNVGVTMD 214 (452) T ss_pred ccccccCC---eeEEEEEEEEEEecCCCcccceeEEEEEEEEEe-CCeEEEEEEEcc--CCceeeeccceeecCCCcccc Confidence 99998764 899999998764 5679999999999999997 689999999743 334556667888999999999 Q ss_pred eeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCC Q lcl|Aclame:pro 270 EIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP 349 (535) Q Consensus 270 ~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp 349 (535) +|||||+++.++++.+++|||+|||+||++|||++|||++|+|++++|++|++|+++.+ +|.+|++++|.+| T Consensus 215 ~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P~l~~~g~~~~~--------~i~iG~~~~~~lp 286 (452) T protein:vir:94 215 YIPFFCITPSGLSMTPAKPPMIDIVDINYSHYRTSADLEHGRHFTGLPTPWITGAESQS--------TMHIGSTKAWVIP 286 (452) T ss_pred eeEEEEEcCCCCCCCCCccchHHHHHHHHHHhcchhHHHHHHHHcccceeEeecCcCCC--------ceEecccccccCC Confidence 99999999999999999999999999999999999999999999999999999987543 5899999999999 Q ss_pred C-CCccceeecCcchhH--HHHHHHHHHHHHHHhhhhhcccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 350 Q-GATAGILQITPNSVP--FEAMTHKESQMIAMGANLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMAFRKALRWA 425 (535) Q Consensus 350 ~-~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a~~~~lr~~ 425 (535) + +++++|+|++|+++. +++|++|++||+.+|++++..++...+++++ ..++++++|+|+++|.++++|++++|+|| T Consensus 287 e~~~~~~yie~~g~~i~~~~~~l~~le~~m~~~Ga~ll~~~~~~~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~~l~~~ 366 (452) T protein:vir:94 287 EVAAKVGFLEFTGQGLQSLEKALSEKQAQLASLSARLIDNSTRGSEATETVKLRYMSETASLKSVTRAVEALLNKAYSCI 366 (452) T ss_pred CCCCcceEEccCchhHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH Confidence 6 999999999999987 6899999999999999999988877767666 57888899999999999999999999999 Q ss_pred HHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc Q lcl|Aclame:pro 426 NQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA 505 (535) Q Consensus 426 a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~ 505 (535) |+|+|.+ .++.|++|+||...++++++++++++++++|.||++|++++|+|+||++++++.+.++++++.+ .+. T Consensus 367 a~w~g~~---~~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i~~E~~~~---~~~ 440 (452) T protein:vir:94 367 MDMESMG---GTLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGVIPDPPAP---EPS 440 (452) T ss_pred HHHcCCC---CceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHHHHHhhcc---Ccc Confidence 9999963 4678999999999999999999999999999999999999999999998876666555544322 122 Q ss_pred CCCcCCCCCCCc Q lcl|Aclame:pro 506 AAGKVGDAASGG 517 (535) Q Consensus 506 ~~~~~~~~~~~~ 517 (535) +.+.+.+++... T Consensus 441 ~~~~~~~~~~~~ 452 (452) T protein:vir:94 441 PSNTPPNPSSKA 452 (452) T ss_pred cCCCCCCCccCC Confidence 333333332222 No 7 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=100.00 E-value=4.9e-136 Score=762.39 Aligned_cols=469 Identities=19% Similarity=0.256 Sum_probs=407.2 Q ss_pred hhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHh Q lcl|Aclame:pro 12 VQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQ 91 (535) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~ 91 (535) .-....|-- =||||| |+++||+|.+++++|++++|| |+++||++|++||||++.++.++|++..|+.|+. T Consensus 1 ~~~~~~~~~-------~~~~m~-V~~~hp~y~a~~~~W~~~~d~--g~~~~k~~g~~YLPk~~~~~~~~~~d~~y~~~~~ 70 (488) T protein:vir:96 1 MLKCLYIKH-------RGFFML-TPIYHPDYLVNAPQWLRNLDC--VMDNIKRKKQTYLPNLGAIPPEAKTDPKVTALAA 70 (488) T ss_pred CceeEEEee-------cceeec-ccccCHHHHHHhhhhhHhhhh--hhHHHHHhhhhcCCCCCCccccccCcchhhhhhc Confidence 111122322 589999 999999999999999999985 6678999999999999998888888877777765 Q ss_pred ------------hhccchhHHHHHHHHhhhhhccccccccC--HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEE Q lcl|Aclame:pro 92 ------------RAIFYNVTARTLDGMMGQVFSRDPIRQLP--PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIF 157 (535) Q Consensus 92 ------------rA~~~n~~~~tv~~l~G~lF~k~p~~~~p--~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vl 157 (535) ||+|+|++++|+++|+|++|+++|+++.| +.|+.|++|||++|+||++|++++++++|.+|+|||| T Consensus 71 ~~~~~y~~~~~~rA~~~n~~~~tl~~l~G~vfrk~p~~~~~~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~il 150 (488) T protein:vir:96 71 KIEKDWEDLTWRLANYVNIVNPTMNAITGAVMRREPEFDTMDNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWL 150 (488) T ss_pred cchhhhHhhhhhccccCchhHHHHHHhcchhhccCceeccCCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEE Confidence 89999999999999999999999999876 5699999999999999999999999999999999999 Q ss_pred EeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCce Q lcl|Aclame:pro 158 TDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGN 237 (535) Q Consensus 158 VD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~ 237 (535) ||||. .+.|+||++++++|||+++|+|++||||+++++||+.+|++|||+|++.+.|+ |....+.+||++++ .+|. T Consensus 151 VD~P~--~~~T~ade~~~~~rPy~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~-~~~~~~~~~~~~~l-~~g~ 226 (488) T protein:vir:96 151 VRSHP--ESATMADWNKGKKLPTAAFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDG-GTYVSKQRLINHRL-VDGL 226 (488) T ss_pred EecCC--CcCCHHHHHHhcCCcEEEEechhhhcCcceeccCCceeeEEEEEEEEEEeccC-CCcccceEEEEEEE-ECcE Confidence 99995 35799999999999999999999999999999999999999999999877543 33344555555555 3688 Q ss_pred EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCc Q lcl|Aclame:pro 238 YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQP 317 (535) Q Consensus 238 y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P 317 (535) |++++|+.+ ++ ..++++++.|+++|++|||||+++.++++.+++|||+|||+||++|||++|||++++|++++| T Consensus 227 ~~v~~~~~~--~~----~~e~~~~~~g~~~l~~IP~v~~~~~~~~~~~~~pPLldLA~lnl~Hy~~ssd~~~il~~~~~p 300 (488) T protein:vir:96 227 CEFQEVTDD--EY----SDEWTPVLINSKQSDTIPFFLASSQSNEWCIDSTPLTSLAEISLSIYVMNAYSNKAMILANEA 300 (488) T ss_pred EEEEEEecC--Cc----ccceEeecCCCcccCeeEEEEEecCCCCCCCCCCchHHHHHHHHHHHhhhhHHHHHHHhcCCc Confidence 877666533 22 246788899999999999999999999999999999999999999999999999999999999 Q ss_pred eeEeeCC--CCccchhccCcceeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHH Q lcl|Aclame:pro 318 TAFFTGL--TKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGE 395 (535) Q Consensus 318 ~~~~~G~--~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~ 395 (535) ++++.+. +.++.. ...+.++.+|.+..+..| .+.++|+|++++++.+++|++|++||+++||++++.+ +++|+++ T Consensus 301 ~lv~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~-~g~~~~~e~~~~~l~~~~l~~l~~qm~~~Ga~l~~~~-~~~Ta~~ 377 (488) T protein:vir:96 301 KWMVDMGDMNKTMAS-EMNPLGFTLAGRMPYYVK-NGDVKVIQAQFSPETENKVEKLFEQAVKVGASLFTQQ-SNETATG 377 (488) T ss_pred eeeeccCCCCccccc-ccccceeeeccccccccc-CCceeecCCchhHHHHHHHHHHHHHHHHHhHhhccCC-CcchHHH Confidence 9997533 222222 223445556665555445 4689999999999999999999999999999999865 5799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHH Q lcl|Aclame:pro 396 AQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIV---NDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKE 472 (535) Q Consensus 396 a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~---~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et 472 (535) +.++++++||+|+++|.++++|++++|+|||+|+|... ++.+++|++|+||....+++++++++++++++|.||++| T Consensus 378 ~~~~~~~~~S~L~~~a~~le~al~~~l~~~A~w~g~~~~~~~~~~~~~~in~dF~~~~ld~~~~~al~~~~~~G~Is~~t 457 (488) T protein:vir:96 378 AAIRSGSSTASMATLGNNVEDTVRNMLRFIMRYFEGTNLYVNPDELVFKLNRDYFDVEVNPQMLQVAYAAMMEGNLPQVS 457 (488) T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCccceEEEeccCCCCccCCHHHHHHHHHHHhcCCCCHHH Confidence 99999999999999999999999999999999999654 345789999999999999999999999999999999999 Q ss_pred HHHHHHhCCCCCccCCHHHHHHHHHhchhhc Q lcl|Aclame:pro 473 MRAGLRRAGVASEDDAKAETEGKATVEFIAK 503 (535) Q Consensus 473 ~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~ 503 (535) ++++|+|+|||+++.++|+|+++|+++..+. T Consensus 458 ~~~~L~~~gvl~~d~~~e~~~~~ie~~g~~~ 488 (488) T protein:vir:96 458 WFELLKRARVVRGDMSKEEFDEHIAELGFGM 488 (488) T ss_pred HHHHHHhCCcCCccCCHHHHHHHHhhcCCCC Confidence 9999999999999999999999999875554 No 8 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=100.00 E-value=1.7e-34 Score=205.79 Aligned_cols=470 Identities=12% Similarity=0.036 Sum_probs=275.8 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCC-----CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPN-----VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSV 75 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~-----v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~ 75 (535) ||- -++++.-. .+.+ |..---.+....++++++.+.|.|.+.+.. +.. T Consensus 1 ~~~---~~~~~~~~----------------~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~-------~~~- 53 (499) T protein:vir:10 1 MAV---VIDKDLLD----------------DVNEPNIEAINYAIRELQNRKKRLDKLSDYYNGKQEIEK-------HEF- 53 (499) T ss_pred Ccc---chhhhHHh----------------hhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchhc-------CCc- Confidence 221 11111100 0000 111112345667888999999999765432 111 Q ss_pred CCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH--HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCc Q lcl|Aclame:pro 76 DSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP--ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGR 153 (535) Q Consensus 76 ~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~--~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~ 153 (535) ... ++.. .|.+ .|+++.+|+..++++|.+||+++.++ ..+.|.+ + .+.++++.++..+++.++.+|+ T Consensus 54 ~~~-------~~~~-~ki~-~n~~~~Iv~~~~~~l~g~p~~~~~~~~~~~~~l~~-~-~~~n~~~~~~~~~~~~~~~~G~ 122 (499) T protein:vir:10 54 DNA-------TVEA-ANVM-VNHAKYITDMNVGFMTGNPVKYVAEKGKNIDDILE-V-FNQIDIHKHDIELEKDLSVFGY 122 (499) T ss_pred CcC-------CCCc-ceee-cchHHHHHHHHhhhhcccCceeecCChhHHHHHHH-H-HhhcCHhHHHHHHHHHHHhcCc Confidence 000 1100 1222 59999999999999999999986532 2333333 2 2347899999999999999999 Q ss_pred EEEEEeecCCCcccch----HHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEE Q lcl|Aclame:pro 154 AAIFTDYPNVGRPVTV----LEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRV 229 (535) Q Consensus 154 ~~vlVD~p~~~~~~t~----ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rv 229 (535) +|++|.....+..... ........++.+..++|.+++-...+. .++..+..|++.+. .+.+ +.+.+..+.+ T Consensus 123 ~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~~v~~d~-~~~~~~~~i~~~~~--~~~~--~~~~~~~~~i 197 (499) T protein:vir:10 123 GYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATVVVCDDT-VEHDPLFAVFTQEK--KDLE--GNTNGYSITV 197 (499) T ss_pred eEEEEEecccccccccccccccccccccceEEEEEcccceEEEecCC-CCcceEEEEEEEEE--eecC--CCceEEEEEE Confidence 9999987665543211 111222335678899999876543222 23333333333332 2222 2356666777 Q ss_pred EeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 230 LQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 230 l~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) ++++. +..|+..... ........+....|+|+.||||.+.+.. .+.+.+.++..|..++....|++.. T Consensus 198 yt~~~-----i~~~~~~~~~---~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~~~~d~e~v~~liD~~~~~~S~~~~ 265 (499) T protein:vir:10 198 YMPQR-----IVEYRTKTTM---EVSANDPIVYDGENLFGAVPIIEFRNNE----ERQGDFEQLISLIDAYNLLQTDRIS 265 (499) T ss_pred EeCCe-----EEEEEecCCc---cccCcceecccccCCCCccceEEecCCC----CCCCchHhHHHHHHHHHHHHHHHHH Confidence 77642 3344433221 1222334456678999999999875432 3567788999999999999999999 Q ss_pred HHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchh-HHHHHHHHHHHHHHHhhhhh---c Q lcl|Aclame:pro 310 MAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSV-PFEAMTHKESQMIAMGANLL---V 385 (535) Q Consensus 310 ~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l-~~~~l~~~e~qm~~lga~~l---~ 385 (535) .+.+.++|+++++|...+...+... .+..|.-..+..+++++++|++.....- ....++.+.++|..++.-+- . T Consensus 266 ~~~~~~~~~lv~~G~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~ 343 (499) T protein:vir:10 266 DKEAFVDALLVTFGFGLGDDKDDIQ--RLKRGAIEAPPREEGADIEWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDE 343 (499) T ss_pred HHHHhcCceeeeecCccccccchhh--hhhhcceeccCCCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCch Confidence 9999999999999976544332211 1222222223345678899998765433 24677888888877664331 2 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceeEEEEecccCCccCCHHHHHHHHHHHh Q lcl|Aclame:pro 386 KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND-ETVEYNLNTDFPAARLTPNERAELILEWQ 464 (535) Q Consensus 386 ~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~-~~~~v~~n~df~~~~~d~~~~~al~~l~~ 464 (535) .-+++.|+.+..............+...++.++++++++++.+++..... +...+++.+......-.++.++++.++ T Consensus 344 ~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl-- 421 (499) T protein:vir:10 344 KFMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKGANDDASGCKISLVANIPSNLSDVVNNVKNA-- 421 (499) T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHH-- Confidence 22456666666677777888899999999999999999999998642111 112234444445555567888888888 Q ss_pred cCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhc----cc-CCCcCCCCCCCcc--cccccccccCC----CCCC Q lcl|Aclame:pro 465 QGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAK----TA-AAGKVGDAASGGT--NKAKLNNGNGG----GNQA 533 (535) Q Consensus 465 ~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~----~~-~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~ 533 (535) +|.||+||+++.| +..++.++|.+||.+|-... .. ..+..++.....+ ++.+.+.++++ ++.+ T Consensus 422 ~g~iS~et~~~~l------~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (499) T protein:vir:10 422 DGIIPRKYTYSWL------PDVDNPQDVIDEMNQQDAETIKKNQEALRGQDPDRLELEDKQDDSSENDKEAGSNHNQSHR 495 (499) T ss_pred hccCChHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccCCCCCCCccccccCCC Confidence 6899999998654 23334666777776552211 11 1111111111111 11111111111 1122 Q ss_pred CC Q lcl|Aclame:pro 534 GN 535 (535) Q Consensus 534 ~~ 535 (535) |- T Consensus 496 ~~ 497 (499) T protein:vir:10 496 TR 497 (499) T ss_pred CC Confidence 22 No 9 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=100.00 E-value=1.2e-33 Score=201.05 Aligned_cols=477 Identities=9% Similarity=-0.017 Sum_probs=281.8 Q ss_pred CC----cchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCC Q lcl|Aclame:pro 1 MA----RKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVD 76 (535) Q Consensus 1 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~ 76 (535) || +.+++|..-. .+|-..+-+..-.-..+ |++-.- ....++++++.+.|.|...+..+...+....+.. T Consensus 1 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--i~~~i~--~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~ 73 (503) T protein:vir:59 1 MADIYPLGKTHTEELN---EIIVESAKEIAEPDTTM--IQKLID--EHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQ 73 (503) T ss_pred CcccccCChhhHHhHH---HhhhhhhhhccchhHHH--HHHHHH--hhcHHHHHHHHHHhccccchhhccchhccccccc Confidence 33 3333333211 11111111100000000 000000 1124667888888888776654433222211111 Q ss_pred CCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEE Q lcl|Aclame:pro 77 SRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAA 155 (535) Q Consensus 77 ~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~ 155 (535) .. ..++.- .|.. .|+++.+|+..++++|.++++++..+ ....+++... .++++.....+++.++.+|++| T Consensus 74 ~~-----~~~~~~-~ri~-~n~~~~ivd~~~~yl~g~~~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~~~ 144 (503) T protein:vir:59 74 LV-----DDTKTN-NRTS-HAWHKLFVDQKTQYLVGEPVTFTSDNKTLLEYVNELA--DDDFDDILNETVKNMSNKGIEY 144 (503) T ss_pred cc-----cccccc-ceee-cchHHHHHHHHHhhhhcCCeeeccCcHHHHHHHHHHH--hcCHHHHHHHHHHHHhhCCeEE Confidence 00 011110 1333 69999999999999999999997653 3445555543 3689999999999999999999 Q ss_pred EEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCC Q lcl|Aclame:pro 156 IFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE 235 (535) Q Consensus 156 vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~ 235 (535) ++|..+..+ +|.+..++|.+++-..-+... ..+..+ +|.......+ .+.+..+.+++.+. T Consensus 145 ~~v~~d~dg-------------~~~i~~~~p~~~~~i~d~~~~--~~~~~~-ir~~~~~~~~---~~~~~~~evy~~~~- 204 (503) T protein:vir:59 145 WHPFVDEEG-------------EFDYVIFPAEEMIVVYKDNTR--RDILFA-LRYYSYKGIM---GEETQKAELYTDTH- 204 (503) T ss_pred EEEeecCCC-------------ceEEEEEccceeEEEEeCCCC--CceEEE-EEEEEEecCC---CceEEEEEEEeCCc- Confidence 999876544 488999999998764333222 233333 2322222221 13344455555432 Q ss_pred ceEEEEEEeeeccCCc------cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 236 GNYQVERWRRETQEEM------YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 236 g~y~v~~w~~~~~~~~------~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) . ..|+....... ......+.......|+++.||||.+.... .+.+.|.++..|..++.+..|++.+ T Consensus 205 -i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~----~~~sd~~~~~~liDa~d~~~s~~~~ 276 (503) T protein:vir:59 205 -V---YYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNE----EMVSDLKFYKDLIDNYDSITSSTMD 276 (503) T ss_pred -E---EEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCC----CCCcchhhhHHHHHHHHHHHHHHHH Confidence 2 22332211110 00011122234556899999999885432 3577788999999999999999999 Q ss_pred HHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhhh---c Q lcl|Aclame:pro 310 MAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANLL---V 385 (535) Q Consensus 310 ~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~l---~ 385 (535) .+.+.++|+++++|.+.+...+. ...+....++.++++++++|++.+...-. ...++.+.+.|..++.-+- . T Consensus 277 ~~~~~~~~~~v~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~ 352 (503) T protein:vir:59 277 SFSDFQQIVYVLKNYDGENPKEF----TANLRYHSVIKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPE 352 (503) T ss_pred HHHHhcCCeeEeecCCccccchh----hhhhhcccceeccCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcc Confidence 99999999999999876654332 12355567788899999999987754433 4567778877777654332 2 Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---ceeEEEEecccCCccCCHHHHHHHHHH Q lcl|Aclame:pro 386 KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND---ETVEYNLNTDFPAARLTPNERAELILE 462 (535) Q Consensus 386 ~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~---~~~~v~~n~df~~~~~d~~~~~al~~l 462 (535) ..+++.|+.+..............+...++.+|++++++++.+++..... ....|++.+.........+.+++++++ T Consensus 353 ~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl 432 (503) T protein:vir:59 353 TIGGGATGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGDFNPDKELTMTFTRTRIQNDSEIVQSLVQG 432 (503) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccceeEEeCCCCCCCHHHHHHHHHHH Confidence 22455666665666677777788888889999999999999887642211 112245555555555567899999999 Q ss_pred HhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc--------CCCCCCCcccccccccccCCCC Q lcl|Aclame:pro 463 WQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK--------VGDAASGGTNKAKLNNGNGGGN 531 (535) Q Consensus 463 ~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 531 (535) +++|.||++|++..| +...+.++|.+||..|.......... .+.....++.++..++|||-.. T Consensus 433 ~~~GiiS~et~l~~l------~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 503 (503) T protein:vir:59 433 VTGGIMSKETAVARN------PFVQDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQVS 503 (503) T ss_pred HhCCCCchHHHHHhC------CCCCCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCCcCCCCCCcccCCCCCCcC Confidence 999999999998643 22334677777776654322111111 1111222233333344443333 No 10 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=100.00 E-value=1.5e-33 Score=200.52 Aligned_cols=437 Identities=11% Similarity=0.041 Sum_probs=267.7 Q ss_pred ccccCCC--CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPN--VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~--v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) |-+.-|+ +++--..+....++++++++.|.|...+ .|+|+.- ...|+.+..+++ .|+++.+|+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i-----~~~~~~~--------~~~~~~~~~k~~-~n~~~~ivd~ 66 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL-----PELTRNT--------SAAWRSFQREAR-TNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----hhcCccc--------Chhhhhhhhhhh-cchHHHHHHH Confidence 2111121 2222234567789999999999996544 3555421 123555555655 6999999999 Q ss_pred HhhhhhccccccccC------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 106 MMGQVFSRDPIRQLP------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 106 l~G~lF~k~p~~~~p------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) .+|++|.++.++..+ ..+..+++. |+++.+...+++.++.+|++|++|.....+. | T Consensus 67 ~~~~l~~~~~~~~~~~d~~~~~~~~~i~~~-----N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~-------------~ 128 (456) T protein:vir:10 67 VADRIIPNGITVGGSADSDLALRARRIWRD-----NRMDSVCKQWVKYGLDFGESYLTCWRRDDGT-------------A 128 (456) T ss_pred HHhhhccCCeecCCCCCcchHHHHHHHHHh-----cChhhHHHHHHHHHhhcCeeEEEEeeCCCCc-------------e Confidence 999999998877432 234455543 6899999999999999999999997655443 7 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeec--cCCccccccc Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRET--QEEMYYSYSK 257 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~--~~~~~~~~~~ 257 (535) .++.++|.+++-. ++...++..+..+++.+. . |+.. ....++.......|....|.... ........+. T Consensus 129 ~i~~~~p~~~~~i-~d~~~~~~~~~~i~~~~~---~-d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) T protein:vir:10 129 TITADSPETMVVS-VDPLQPWRIRAAMRWWRD---L-DAES----DFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) T ss_pred EEEEEccceeEEE-EcCCCCcceEEEEEEEEe---c-CCce----eEEEEEeccceeEEEEEEEEeecccceeeeecCCc Confidence 8999999998643 233333343333333321 1 2111 11111111111111111111111 1111122333 Q ss_pred eeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch-h--cc- Q lcl|Aclame:pro 258 HVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE-D--VF- 333 (535) Q Consensus 258 ~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~-d--~~- 333 (535) ++......|.++++||+++.+. .+.+.+.++..|..++.+..|+....+++.++|+++++|...+... + +. T Consensus 200 ~~~~~~~~~~~~~~pvv~~~N~-----~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~ 274 (456) T protein:vir:10 200 WVPVGDAVVTGSPPPVVVYQNP-----DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNA 274 (456) T ss_pred eeeccccCCCCCceeEEEecCC-----CCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccc Confidence 4455556789999999998643 2456688899999999999999999999999999999997543221 1 10 Q ss_pred --CcceeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhh---hhcccccccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 --KDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGAN---LLVKSGGNRTFGEAQQEEASEQSILS 408 (535) Q Consensus 334 --~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~---~l~~~~~~~ta~~a~~~~~~~~S~L~ 408 (535) ....+..+...+|.+|++++++.+.........+.++.+..++..+..- .+...++|.|+.+.+........... T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~ 354 (456) T protein:vir:10 275 IDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCE 354 (456) T ss_pred cchhhhhhhhccccccCCCCcceEEecccChhHHHHHHHHHHHHHHhccCCChHHhcccccChHHHHHHHHHHHHHHHHH Confidence 1112345666788888888877554332222346777777777654432 33344556666666666677777788 Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCC Q lcl|Aclame:pro 409 ACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDA 488 (535) Q Consensus 409 ~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~ 488 (535) .+...++.+|.++++++....|.. +.. .+++.|........++.++++.++.++|.+|++++++.| |+.+++ . T Consensus 355 ~~~~~f~~~l~~~~rl~~~~~g~~-~~~--~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~l---g~~~~~-i 427 (456) T protein:vir:10 355 DRLSIAKIGLEAILVKALQIEGES-VED--TVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQ-I 427 (456) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-ccc--ceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhC---CCCHHH-H Confidence 888899999999999999887742 222 344444333345568999999999999999999886543 554322 2 Q ss_pred HHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 489 KAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 489 ~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) .+++.+|+..|...+...+...+++ +||. T Consensus 428 ~~~e~er~~~e~~~~~~~~~~~~~~-----------~~~~ 456 (456) T protein:vir:10 428 KQDDLDRAREQITLFAGNPVQRPQE-----------DGSR 456 (456) T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCC-----------CCCC Confidence 4445666666543321111111111 1222 No 11 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=100.00 E-value=1.5e-33 Score=200.52 Aligned_cols=437 Identities=11% Similarity=0.041 Sum_probs=267.7 Q ss_pred ccccCCC--CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPN--VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~--v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) |-+.-|+ +++--..+....++++++++.|.|...+ .|+|+.- ...|+.+..+++ .|+++.+|+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i-----~~~~~~~--------~~~~~~~~~k~~-~n~~~~ivd~ 66 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL-----PELTRNT--------SAAWRSFQREAR-TNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----hhcCccc--------Chhhhhhhhhhh-cchHHHHHHH Confidence 2111121 2222234567789999999999996544 3555421 123555555655 6999999999 Q ss_pred HhhhhhccccccccC------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 106 MMGQVFSRDPIRQLP------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 106 l~G~lF~k~p~~~~p------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) .+|++|.++.++..+ ..+..+++. |+++.+...+++.++.+|++|++|.....+. | T Consensus 67 ~~~~l~~~~~~~~~~~d~~~~~~~~~i~~~-----N~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~-------------~ 128 (456) T protein:vir:10 67 VADRIIPNGITVGGSADSDLALRARRIWRD-----NRMDSVCKQWVKYGLDFGESYLTCWRRDDGT-------------A 128 (456) T ss_pred HHhhhccCCeecCCCCCcchHHHHHHHHHh-----cChhhHHHHHHHHHhhcCeeEEEEeeCCCCc-------------e Confidence 999999998877432 234455543 6899999999999999999999997655443 7 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeec--cCCccccccc Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRET--QEEMYYSYSK 257 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~--~~~~~~~~~~ 257 (535) .++.++|.+++-. ++...++..+..+++.+. . |+.. ....++.......|....|.... ........+. T Consensus 129 ~i~~~~p~~~~~i-~d~~~~~~~~~~i~~~~~---~-d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (456) T protein:vir:10 129 TITADSPETMVVS-VDPLQPWRIRAAMRWWRD---L-DAES----DFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDS 199 (456) T ss_pred EEEEEccceeEEE-EcCCCCcceEEEEEEEEe---c-CCce----eEEEEEeccceeEEEEEEEEeecccceeeeecCCc Confidence 8999999998643 233333343333333321 1 2111 11111111111111111111111 1111122333 Q ss_pred eeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch-h--cc- Q lcl|Aclame:pro 258 HVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE-D--VF- 333 (535) Q Consensus 258 ~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~-d--~~- 333 (535) ++......|.++++||+++.+. .+.+.+.++..|..++.+..|+....+++.++|+++++|...+... + +. T Consensus 200 ~~~~~~~~~~~~~~pvv~~~N~-----~g~gd~e~vi~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~ 274 (456) T protein:vir:10 200 WVPVGDAVVTGSPPPVVVYQNP-----DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNA 274 (456) T ss_pred eeeccccCCCCCceeEEEecCC-----CCCchhhhhHHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccc Confidence 4455556789999999998643 2456688899999999999999999999999999999997543221 1 10 Q ss_pred --CcceeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhh---hhcccccccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 334 --KDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGAN---LLVKSGGNRTFGEAQQEEASEQSILS 408 (535) Q Consensus 334 --~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~---~l~~~~~~~ta~~a~~~~~~~~S~L~ 408 (535) ....+..+...+|.+|++++++.+.........+.++.+..++..+..- .+...++|.|+.+.+........... T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~s~~p~~~~~~~~~N~Sg~Ai~~~~~~l~~k~~ 354 (456) T protein:vir:10 275 IDYASIFEAAPGALWELPPGVDIWESQANDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKCE 354 (456) T ss_pred cchhhhhhhhccccccCCCCcceEEecccChhHHHHHHHHHHHHHHhccCCChHHhcccccChHHHHHHHHHHHHHHHHH Confidence 1112345666788888888877554332222346777777777654432 33344556666666666677777788 Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCC Q lcl|Aclame:pro 409 ACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDA 488 (535) Q Consensus 409 ~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~ 488 (535) .+...++.+|.++++++....|.. +.. .+++.|........++.++++.++.++|.+|++++++.| |+.+++ . T Consensus 355 ~~~~~f~~~l~~~~rl~~~~~g~~-~~~--~~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~l---g~~~~~-i 427 (456) T protein:vir:10 355 DRLSIAKIGLEAILVKALQIEGES-VED--TVDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNIL---NYNADQ-I 427 (456) T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-ccc--ceeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhC---CCCHHH-H Confidence 888899999999999999887742 222 344444333345568999999999999999999886543 554322 2 Q ss_pred HHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 489 KAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 489 ~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) .+++.+|+..|...+...+...+++ +||. T Consensus 428 ~~~e~er~~~e~~~~~~~~~~~~~~-----------~~~~ 456 (456) T protein:vir:10 428 KQDDLDRAREQITLFAGNPVQRPQE-----------DGSR 456 (456) T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCC-----------CCCC Confidence 4445666666543321111111111 1222 No 12 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=100.00 E-value=2.8e-33 Score=199.04 Aligned_cols=459 Identities=10% Similarity=0.026 Sum_probs=254.2 Q ss_pred ceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhc Q lcl|Aclame:pro 15 KVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAI 94 (535) Q Consensus 15 ~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~ 94 (535) -+-||-+..-+-.|.-.+ ...-.+.+....++++++++.|.|...++ ++|... . .+.++....+++ T Consensus 1 ~~~~p~~~l~~~~~~~~~--~~~l~~~~~~~~~r~~~~~~YY~g~~~i~-----~~~~~~----~---~~~~~~~~~~~~ 66 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYL--ETKVFPKMNTECERLDDFEAWTKNGQEVP-----DLATRH----K---NKEREVLQQLSR 66 (479) T ss_pred CccCCcccCChhHHHHHH--HHHHHHHHHHHhHHHHHHHHHHhcCCccc-----cccccc----C---ChhHHHHHHHhh Confidence 333443322111111000 01223567778899999999999976543 222211 1 112322223333 Q ss_pred cchhHHHHHHHHhhhhhcccccc---ccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHH Q lcl|Aclame:pro 95 FYNVTARTLDGMMGQVFSRDPIR---QLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLE 171 (535) Q Consensus 95 ~~n~~~~tv~~l~G~lF~k~p~~---~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad 171 (535) .|+++.+|+++++++|-...+. +..+.+..++++ |+++..+..+++.++.+|++|++|....... | T Consensus 67 -~n~~~~iVd~~~~~l~~~gf~~~d~~~~~~~~~i~~~-----N~~d~~~~~~~~~a~~~G~af~~v~~~~~~~-----d 135 (479) T protein:vir:99 67 -KPWMGLMVNSFAQQLIVDGYRKTGTNENAKGWDTWRL-----NQMDKQQFWLNRAVLTFGYAFIKVTSGISPL-----D 135 (479) T ss_pred -cCcHHHHHHHHHhhcccccccCCCchhhHHHHHHHHh-----cChhHHHHHHHHHHhhcCceEEEEecCCCCc-----C Confidence 5999999999999997554333 123345556554 6899999999999999999999996211100 0 Q ss_pred HHhccCCcEEEEechhhhhc-ceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCC Q lcl|Aclame:pro 172 QKLGLYRPTITLVHPTSIIN-WRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEE 250 (535) Q Consensus 172 ~~~~~~rPy~~~~~~~~Ii~-w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~ 250 (535) ....|.+..++|++++- |+- .... .. +.+ .+....++ .++++.. ..+..|..... T Consensus 136 ---~~g~~~i~~~~p~~~~~iydd-~~~~---~~-~~~--~~~~~~~~--------~~~~~~~----~~~~~~~~~~~-- 191 (479) T protein:vir:99 136 ---GTTVARIKCIDPRDAFAIWED-PYWD---EW-PKY--LLERQPNG--------QYWWWTE----EDYSIFEFKQG-- 191 (479) T ss_pred ---CCCceEEEEechhheEEEecC-Cccc---ce-eeE--EEeecCce--------eEEEEec----ceEEEEEecCC-- Confidence 01138899999999864 322 1111 11 111 11111111 1112211 12334433221 Q ss_pred ccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch Q lcl|Aclame:pro 251 MYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE 330 (535) Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~ 330 (535) .+...+...|++|.||||.|.+.......+.+.|.++..|..++.+..|++..++.+.++|++|++|....... T Consensus 192 ------~~~~~~~~~h~~g~vPvv~f~n~~~~~~~g~sd~e~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~ 265 (479) T protein:vir:99 192 ------KFIYRETVSHDYGHIPFVRYVNVMDLRGVCYGDVEPLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEGA 265 (479) T ss_pred ------ceeeccccccCCCCcceEEeecCCCcCcCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCccccc Confidence 23334456799999999976544333346888999999999999999999999999999999999998654433 Q ss_pred hccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHhhhhh--cccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 331 DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMGANLL--VKSGGNRTFGEAQQEEASEQSI 406 (535) Q Consensus 331 d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga~~l--~~~~~~~ta~~a~~~~~~~~S~ 406 (535) +.. .....+....+|.++ +.++++.|+.+..+. .+.++.+..++.....-.. ....++.|+.+........... T Consensus 266 ~~~-~~~~~~~~~~i~~~~-~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~g~~~n~Sg~Al~~~~~~l~~k 343 (479) T protein:vir:99 266 NAD-QEKMRFAQESMLISQ-NEKASFGAIPAAPLDGLLNAYKESLLEFLALAQLPPHIAGQIVNVAADALAAGTRQTMQK 343 (479) T ss_pred ccc-hhccccccccceeec-CCCceEEEecccchHHHHHHHHHHHHHHhccCCCCHHHcccccchHHHHHHHHHHHHHHH Confidence 322 222344444555443 445677787766553 3556665666544332111 1123444444444445555555 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 407 LSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASED 486 (535) Q Consensus 407 L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~ 486 (535) ...+...+..+|++++++++.+.|...+...+.+++.|........++.++++++|+++|.+|++|+++.| -|+-++. T Consensus 344 a~~~~~~f~~al~~~~~l~~~~~~~~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l--~gv~~~~ 421 (479) T protein:vir:99 344 LFEKQATWKASHNQTMRLVNKIEGRTEEATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMI--PNLDQST 421 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhc--CCCCHHH Confidence 66666777789999999999998865544445566655333345568899999999999999999998655 2332221 Q ss_pred CCHHHHHHH--HHhc---hhhcccCCCcCCC---CCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 487 DAKAETEGK--ATVE---FIAKTAAAGKVGD---AASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 487 ~~~eee~~~--i~~e---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) .++++.. .+.+ .......+..+.. +..+.++..+..+.+ |.|.+=| T Consensus 422 --~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 475 (479) T protein:vir:99 422 --VNGWKEIYDREGDFGKYMRKLQNGPDPAEQRGGPNGATNMQQANNKT-GEPASLN 475 (479) T ss_pred --HHHHHHHHHHHHHHHHHHHHHhcccCcccccCCCCCCCCCCCCCCCC-cchhccC Confidence 1111111 1111 1111111111111 111112211111111 1122222 No 13 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=100.00 E-value=1.2e-32 Score=195.58 Aligned_cols=469 Identities=11% Similarity=0.044 Sum_probs=268.5 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccc---cCCC------CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGP---SLPN------VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLP 71 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~M~~------v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP 71 (535) |.-.-..|-+ -|+.+|=+ .|-. +..-...|...+++++++.+.|.|...+ .||| T Consensus 1 ~~~~~~~~~~------------~~~~~~~~p~~~~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~-----~~~~ 63 (501) T protein:vir:25 1 MTVPVDVIAD------------APAADVEFPEDSMSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGR-----PEVP 63 (501) T ss_pred Ccccchhhhc------------cCcccccCCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----hhcc Confidence 2211111111 23333321 1110 2234566777888999999999996543 3455 Q ss_pred CCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccc---cCHHHHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 72 MPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQ---LPPALEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 72 ~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~---~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) +.- ...|+....+++ .|+.+.+|++++++++-...+.. ..+.+..+++. |+++....++++.+ T Consensus 64 ~~~--------~~~~~~~~~~~v-~n~~~~ivd~~a~~l~~~gf~~~d~~~~~~l~~i~~~-----N~~d~~~~~~~~~a 129 (501) T protein:vir:25 64 EGA--------SDEVKELAKLSV-KNVLSLVRDSFAQNLSVVGYRNALAKENDPAWEMWQR-----NRMDARQAEVHRPA 129 (501) T ss_pred ccC--------ChhhhhhHhhhh-cChHHHHHHHHHhhhcccceecCCccchHHHHHHHHh-----cChhHHHHHHHHHH Confidence 421 123655544554 59999999999999976554432 23345555543 68999999999999 Q ss_pred HhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhh-cceeeecCCccceeEEEEEEEEeecCCCcccceeeEE Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSII-NWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQW 227 (535) Q Consensus 149 l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii-~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~ 227 (535) +.+|++|++|.....+ |.++.++|.+++ -|.-.... +... ..++-.....+. ....+. T Consensus 130 ~i~G~ay~~v~~de~~--------------~~i~~~sp~~~~~iy~D~~~~--~~~~-~ai~~~~~~~~~----~~~~~~ 188 (501) T protein:vir:25 130 LTYGASYVTVTPTDEG--------------PVFRTRSPRQILAVYADPSVD--AWPQ-YALETWVAQKDA----KPHRRG 188 (501) T ss_pred hhcCceEEEEecCCCC--------------CeEEEeccccEEEEEecCCCC--ccee-EEEEEEeecccc----CcceeE Confidence 9999999999643211 678899999986 34322221 1222 222222211111 122222 Q ss_pred EEEeecCCceEEEE-----EEeeeccCCc-----cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHH Q lcl|Aclame:pro 228 RVLQLNAEGNYQVE-----RWRRETQEEM-----YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVN 297 (535) Q Consensus 228 rvl~l~~~g~y~v~-----~w~~~~~~~~-----~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln 297 (535) .++... ..|... .+........ ............+.|+++.||||.+-+.......+.+.+.++..|. T Consensus 189 ~~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~~~~~~g~sdie~v~~l~ 266 (501) T protein:vir:25 189 VLYDDT--YMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGRDADDMIVGEVAPLILLQ 266 (501) T ss_pred EEecCe--eEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCccccCccccchhhhhHHHH Confidence 222221 111110 0000000000 0111122233456799999999977554433445788899999999 Q ss_pred HHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHH Q lcl|Aclame:pro 298 IGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQ 375 (535) Q Consensus 298 ~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~q 375 (535) .++.+..|++..++++.++|++|+.|++.+..+. +.+..+.+|.+| +.++++.|+....+. .+.++.+..+ T Consensus 267 Da~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~------~~~~~~~i~~~~-~~~~~~~q~~~~~~~~~~~~l~~~i~~ 339 (501) T protein:vir:25 267 QAINSVNFDRLIVSRFGANPQRVISGWTGSKAEV------LKASALRVWTFE-DPEVKAQAFPPASVEPYNLILEEMLQH 339 (501) T ss_pred HHHHHHHHHHHHHHHhhccHHHHHhCCCCCccch------hhhcccceeccC-CCCceEEEecccChHHHHHHHHHHHHH Confidence 9999999999999999999999999997654432 334455677665 445677788776653 3667777777 Q ss_pred HHHHhh---hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCC Q lcl|Aclame:pro 376 MIAMGA---NLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLT 452 (535) Q Consensus 376 m~~lga---~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d 452 (535) |..... ..+...++|.++.+..............+...+..+|++++++++...|.........+++.|........ T Consensus 340 i~~~s~~P~~~~~~~~~N~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~ 419 (501) T protein:vir:25 340 VAMVAQISPAQVTGKMINVSAEALAAAEANQQRKLAAKRESFGESWEQLLRLAAEMDDDPDTAADSGAEVLWRDTEARSF 419 (501) T ss_pred HHhhcCCChhhhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccceeeeEEecCCCCCCH Confidence 766432 23344455666665566666677777888889999999999999998885433333456666555555667 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhc----hhhcccCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVE----FIAKTAAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) ++.++++.+++++| ||.++++.++ .|+-+++ .++.++..+.+ ..+.+......+.....+.+...-++.+| T Consensus 420 ~~~ada~~kl~~~g-is~et~~~~~--~g~~~~~--ie~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (501) T protein:vir:25 420 GAVVDGITKLASAG-IPIEHLLSMV--PGMTQQT--IQAIKDSLRGGEVKSLVDKLLSNEPAPVPPPPPQAAAQALNEGG 494 (501) T ss_pred HHHHHHHHHHHhcC-CCHHHHHHHc--CCCCHHH--HHHHHHHHHHHhHHHHHHHhhccCcCCCCCCCCCCCcccccccc Confidence 89999999999987 7999887643 3432211 11112111111 11111111111111111111111222222 Q ss_pred CCCCCCC Q lcl|Aclame:pro 529 GGNQAGN 535 (535) Q Consensus 529 ~~~~~~~ 535 (535) ..|.+|- T Consensus 495 ~~~~~g~ 501 (501) T protein:vir:25 495 VNGNGGA 501 (501) T ss_pred CCCCCCC Confidence 2222222 No 14 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=100.00 E-value=7.7e-33 Score=196.66 Aligned_cols=453 Identities=14% Similarity=0.108 Sum_probs=265.8 Q ss_pred CCC----CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh Q lcl|Aclame:pro 32 LPN----VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM 107 (535) Q Consensus 32 M~~----v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~ 107 (535) |++ |..--..+....++++++.+.|.|...++ |+|.. .+ ..++.+ + .-.|+.+.+|+.++ T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~i~-----~~~~~----~~----~~~~~~--~-~~~n~~~~ivd~~~ 64 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLK-----TIGIG----AP----PELAYL--D-VQPGWVATYLRTLS 64 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-----ccccc----cc----hhHhhh--h-hhcchHHHHHHHHH Confidence 875 33334456678888999999999976553 33321 01 123322 2 33699999999999 Q ss_pred hhhhccccccc----cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEE Q lcl|Aclame:pro 108 GQVFSRDPIRQ----LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITL 183 (535) Q Consensus 108 G~lF~k~p~~~----~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~ 183 (535) ++++....++. ..+.+..+++. |+++..+..+++.++.+|+||++|........ ....+|.+.. T Consensus 65 ~~l~~~g~~~~~d~~~~~~l~~i~~~-----N~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~-------d~~g~~~i~~ 132 (480) T protein:vir:78 65 DRLDIEGFRISEDSEGLEELWNWWQA-----NDLDEESVLGHDDSLTFGRSYITVSHPDVESG-------DPAGIPLIRV 132 (480) T ss_pred hhhccCceecCCCchhHHHHHHHHHh-----cCHHHHHHHHHHHHhhcCceEEEEecCccccC-------CCCCeeEEEE Confidence 99976554442 34456666643 68999999999999999999999974321110 1123589999 Q ss_pred echhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeecc Q lcl|Aclame:pro 184 VHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDG 263 (535) Q Consensus 184 ~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~ 263 (535) ++|++++-.--..+ .+.++.+ ++.....++ ...+.++.+|+.+. .|. |+........+. ...+. T Consensus 133 ~~p~~~~~~~D~~~--~~~~~~~-i~~~~~~~~----~~~~~~~~~y~~~~--~~~---~~~~~~~~~~~~----~~~~~ 196 (480) T protein:vir:78 133 ESPLYMYAELDPRN--TRRVTRA-VRLYTTRDD----VAVPDRATLYLPDE--TVP---LRRNGGLNDQWV----VDGDV 196 (480) T ss_pred EcccceEEEEcCCC--ccceEEE-EEEEEeecC----CCceEEEEEEeCCe--EEE---EEecCCCccccc----ccccc Confidence 99999874332211 2344443 222222222 23455666666543 222 322222111111 11234 Q ss_pred CCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeec Q lcl|Aclame:pro 264 NGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLG 341 (535) Q Consensus 264 ~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG 341 (535) ..|++++||||+| +..+.+...+.+.|. +|..|..++.+..|++..++.+.++|+++++|.+.+...+......+... T Consensus 197 ~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~ 276 (480) T protein:vir:78 197 IKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLDIY 276 (480) T ss_pred ccCCCCCcceEEeecccccCCccCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhhcCCccccccccccchhhhh Confidence 4689999999965 444555566788887 58999999999999999999999999999999876554433333334445 Q ss_pred CcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 342 SRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVS 415 (535) Q Consensus 342 ~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~ 415 (535) .+.+|.++ +.++++.|+...++. .+.++.+..++...+. ..+...+.+.+++.| +............+...+. T Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg~Alk~~~~~l~~ka~~~~~~f~ 355 (480) T protein:vir:78 277 YGRILTLA-SEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFG 355 (480) T ss_pred hhhhccCC-CCCceEEecCccCHHHHHHHHHHHHHHHhcccCCChHHhccccCcchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55566554 456788888877654 3556666666654332 222223333333333 4444555556666677778 Q ss_pred HHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcC--CCCHHHHHHHHHhCCCCCccCCHHHHH Q lcl|Aclame:pro 416 MAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQG--AITFKEMRAGLRRAGVASEDDAKAETE 493 (535) Q Consensus 416 ~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G--~is~et~~~~L~r~gvl~~~~~~eee~ 493 (535) .+|.+++++++.+.|.....+...+.+.+........++.++++.+++++| .+|++|+++.| |+.++ ..++.+ T Consensus 356 ~~l~~~~~l~~~~~g~~~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l---g~~~d--~~~~~~ 430 (480) T protein:vir:78 356 GAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDL---GYTAT--QREQMR 430 (480) T ss_pred HHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcC---CCCHh--HHHHHH Confidence 899999999999988544333334444443333445688999999999976 68999987653 55432 122222 Q ss_pred HHHHhc---hhh-cccCCCcCCC----CCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 494 GKATVE---FIA-KTAAAGKVGD----AASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 494 ~~i~~e---~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +..+++ ..+ ........++ +..+.+ ....++..+|.+-++- T Consensus 431 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 479 (480) T protein:vir:78 431 DWDKQETEDMIDTLYSTTKAQADATPKPTVTET-KTETQTSPSGFNRTKT 479 (480) T ss_pred HHHHHHHHHHHHHhhccccccCCCCCCCCCCCC-CCccccccCCCCcccC Confidence 111111 111 1111111111 111111 1122333344444433 No 15 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=100.00 E-value=1.1e-32 Score=195.69 Aligned_cols=454 Identities=14% Similarity=0.104 Sum_probs=266.7 Q ss_pred CCC----CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh Q lcl|Aclame:pro 32 LPN----VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM 107 (535) Q Consensus 32 M~~----v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~ 107 (535) |++ |..--..+....++++++.+.|.|...++ |+|.-. . ..++.. + .-.|+.+.+|+.++ T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~i~-----~~~~~~----~----~~~~~~--~-~~~n~~~~ivd~~~ 64 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRRLK-----TIGIGA----P----PELAYL--D-VQPGWVATYLRTLS 64 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----hccccc----c----hhhhhh--h-hhcchHHHHHHHHH Confidence 885 33444456778889999999999976553 333211 0 112221 2 23699999999999 Q ss_pred hhhhccccccc----cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEE Q lcl|Aclame:pro 108 GQVFSRDPIRQ----LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITL 183 (535) Q Consensus 108 G~lF~k~p~~~----~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~ 183 (535) ++++-...+.. ..+.+..+++. |+++..+..+++.++.+|+||++|........ ....+|.+.. T Consensus 65 ~~l~~~g~~~~~d~~~~~~l~~i~~~-----N~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~-------d~~~~~~i~~ 132 (480) T protein:vir:78 65 DRLDIEGFRISEDSEGLEELWNWWQA-----NDLDEESVLGHDDSLTFGRAYITVSHPDVESG-------DPAGIPLIRV 132 (480) T ss_pred hhhccCceecCCCchhHHHHHHHHHh-----cCHHHHHHHHHHHHhhcCceEEEeecCccccC-------CCCCeeEEEE Confidence 99976655442 34456666643 68999999999999999999999974321100 0123589999 Q ss_pred echhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeecc Q lcl|Aclame:pro 184 VHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDG 263 (535) Q Consensus 184 ~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~ 263 (535) ++|++++-.- +.. ..+.++.+ ++.....++ ....+++.+++.+. .|. |+........+ ....+. T Consensus 133 ~~p~~~~~i~-D~~-~~~~~~~~-i~~~~~~d~----~~~~~~~~~y~~~~--~~~---~~~~~~~~~~~----~~~~~~ 196 (480) T protein:vir:78 133 ESPLYMYAEL-DPR-NTRRVTRA-VRLYTTRDD----VAVPDRATLYLPDE--TVP---LRRNGGLNDQW----VVDGDV 196 (480) T ss_pred EcccceEEEE-cCC-CccceEEE-EEEEEeecC----CcceEEEEEEeCCe--EEE---EEecCCCcccc----cccccc Confidence 9999986322 211 12234433 222222222 12345566666542 222 22222111111 111233 Q ss_pred CCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeec Q lcl|Aclame:pro 264 NGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLG 341 (535) Q Consensus 264 ~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG 341 (535) ..|++|+||||.| +..+.+...|.+.|. +|..|..+..+..|++..++++.++|+++++|.+.+...+......+... T Consensus 197 ~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~ 276 (480) T protein:vir:78 197 IKHGLGVVPVVPLTNDPRLGNRYGRSEISPELRKVTDAASRTLMNLQSASQILGTPLRVISGVTTDELTNDGENTTLDIY 276 (480) T ss_pred cccCCCCcceEEeecccccCCccCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhCCCccccccccccchhhhh Confidence 4689999999966 444555556788886 58999999999999999999999999999999876544333333344455 Q ss_pred CcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchHHH-HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 342 SRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVS 415 (535) Q Consensus 342 ~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~ 415 (535) .+.+|.++ +.+++|.++..+.+. .+.++.+..++..... ..+...+.+.+++.| .............+...+. T Consensus 277 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~k~~~~~~~f~ 355 (480) T protein:vir:78 277 YGRILTLA-SEAAKISEFKAAELRNFAEEMEVFRKEAASITGLPPQYLSSSSENPASAEAIIATDSRIVKMAERKGRIFG 355 (480) T ss_pred hhhhccCC-CCCceEEecCccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 55666655 456778888887654 3556666666654432 122223334344433 4445555666677777888 Q ss_pred HHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcC--CCCHHHHHHHHHhCCCCCccCCHHHHH Q lcl|Aclame:pro 416 MAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQG--AITFKEMRAGLRRAGVASEDDAKAETE 493 (535) Q Consensus 416 ~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G--~is~et~~~~L~r~gvl~~~~~~eee~ 493 (535) .+|.+++++++.+.|.....+...+++.+........++.++++.+++++| .+|++|+++.| |+.++ ..++++ T Consensus 356 ~~l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l---g~~~d--~~~e~~ 430 (480) T protein:vir:78 356 GAWERAMRIAMQIMGREVTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDL---GYTAT--QREQMR 430 (480) T ss_pred HHHHHHHHHHHHHcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcC---CCCHh--HHHHHH Confidence 899999999999988544333344555554334455688999999999977 68999887643 54422 222222 Q ss_pred HHHHhc---hhhcc-cCC---CcCC-CCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 494 GKATVE---FIAKT-AAA---GKVG-DAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 494 ~~i~~e---~~~~~-~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +..+++ ..+.. .+. +... .+..+.+.....+.++|=+-+.+- T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (480) T protein:vir:78 431 DWDKQETEDMIDTLYSTTKAQADATPKPTVTETKTETQTSPSGFNRTKTR 480 (480) T ss_pred HHHHHHHHHHHHHhhccccCCCccccCCCCCCCCCccCCCcccCCCcCCC Confidence 222122 11111 110 0001 111222222222333333333333 No 16 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=100.00 E-value=1.1e-31 Score=190.40 Aligned_cols=454 Identities=10% Similarity=0.051 Sum_probs=266.7 Q ss_pred cCCCCCCCCccc---ccCC----C----CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHH Q lcl|Aclame:pro 18 IPPQAPPTSGLG---PSLP----N----VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRY 86 (535) Q Consensus 18 ~~~~~~~~~~~~---~~M~----~----v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y 86 (535) .-|+-|-+.-+- +-|. . |..--..+....++|+++.+.|.|...+..+...|...... ..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~--------~~~ 72 (472) T protein:vir:93 1 MYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAV--------DPL 72 (472) T ss_pred CCCCCCcchhhhhceeeecCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhccccc--------ccc Confidence 111211111100 0011 0 01111133556678888888888865543222222211100 001 Q ss_pred HHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCc Q lcl|Aclame:pro 87 ETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGR 165 (535) Q Consensus 87 ~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~ 165 (535) +.. .| +-.|+.+.+|+..+|++|.++++++..+ ....+++++- .++++.....+++.++.+|+||++|..+..+ T Consensus 73 ~~~-~r-i~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~~~~~v~~d~d~- 147 (472) T protein:vir:93 73 KPD-DR-MITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL--GNRFDDKLHSVLTGASNKGIEWLHPYLDEEG- 147 (472) T ss_pred ccc-cc-cccchHHHHHHHHhhhhcccCeeeccCChHHHHHHHHHH--hccHHHHHHHHHHHHhhcCeEEEEEEECCCC- Confidence 110 12 2259999999999999999999997543 3334445442 3578999999999999999999999876544 Q ss_pred ccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEee Q lcl|Aclame:pro 166 PVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRR 245 (535) Q Consensus 166 ~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~ 245 (535) +|-+..++|.+++-.--+... +.+..+ +|....+. . +.+.++..+. +..|+. T Consensus 148 ------------~~~i~~~~p~~~~~i~d~~~~--~~~~~~-ir~~~~~~-~-------~~~~~~~~~~-----~~~~~~ 199 (472) T protein:vir:93 148 ------------EFKLFRVPAEQGIPIWTDKEH--EELEAF-IRMYKLEN-E-------TKVEYWDKVT-----VNYYVY 199 (472) T ss_pred ------------ceEEEEEcccceEEEEcCCCC--CceEEE-EEEEEeec-c-------eeEEEEecCe-----EEEEEE Confidence 388899999998764222222 234332 33222221 1 1223333221 112221 Q ss_pred eccCCc--cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeC Q lcl|Aclame:pro 246 ETQEEM--YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTG 323 (535) Q Consensus 246 ~~~~~~--~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G 323 (535) +..... .........+....|+|+.||||.+.+.. .+.+.+.++..|..+..+..|++...+.+.++|+++++| T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~----~g~s~~e~v~~liDa~~~~~s~~~~~~~~~~~~~~~~~g 275 (472) T protein:vir:93 200 ENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTN 275 (472) T ss_pred ecCeeeecccccccccccccccCCCCCcceEEecCCC----CCCCchhhhHHHHHHHHHHHHHHHHHHHHhcCceeEeec Confidence 111100 00111122334567999999999885432 467778899999999999999999999999999999999 Q ss_pred CCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhhh---cccccccchHHHHHH Q lcl|Aclame:pro 324 LTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANLL---VKSGGNRTFGEAQQE 399 (535) Q Consensus 324 ~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~l---~~~~~~~ta~~a~~~ 399 (535) .+.+...+.. -.++...++.++++++++|+....+.-. ...++.+.+.|..++...- ...+++.|+.+.... T Consensus 276 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~ 351 (472) T protein:vir:93 276 YDDQELPEFK----RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFL 351 (472) T ss_pred CCcccchhhH----HHHhhccccccCCCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCchHHHHHHH Confidence 8765433321 1234556788899999999986644333 3567777777776654332 222345555555556 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHh Q lcl|Aclame:pro 400 EASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRR 479 (535) Q Consensus 400 ~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r 479 (535) ..........+...++.+|++++++++.++|...+. ..+.+.+.+......++.++++.++ +|.||++|+++.| T Consensus 352 ~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~--~~i~v~f~~~~p~~~~~~~~~~~k~--~giis~et~l~~l-- 425 (472) T protein:vir:93 352 YTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH--KDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENH-- 425 (472) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc--ceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhC-- Confidence 667777888888999999999999999999854433 3455555566666567888888887 5899999987643 Q ss_pred CCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 480 AGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 480 ~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) + ...+.++|.+||++|-........... .++++..+....++-..++ T Consensus 426 -~---~~~d~~~E~~ri~~E~~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~e 472 (472) T protein:vir:93 426 -P---FVEDLQAELERIEQEQMEYNKQLPNLD---DGGADGAQQQERSNNKESE 472 (472) T ss_pred -C---CCCCHHHHHHHHHHHHHHHHHhccCcC---cccCCCCCCCCCCCcccCC Confidence 2 223467777777666332211111111 1112222222222111111 No 17 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=100.00 E-value=6.5e-32 Score=191.58 Aligned_cols=469 Identities=11% Similarity=0.056 Sum_probs=271.7 Q ss_pred CCcchhhhhhhhhc-----ceecCCCCCCCCcccc--cCCC---------CCccCHHHHHHHHHHHHHHHHhcChHHHHH Q lcl|Aclame:pro 1 MARKRTTIRRDVQS-----KVLIPPQAPPTSGLGP--SLPN---------VGYQRVEFGEMLPKWRKIMDCLSGQEAIKA 64 (535) Q Consensus 1 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~M~~---------v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~ 64 (535) |.- -.-|..-.|. .|+-| -.|-+-..=- ++.+ |..--..+....++++++.+.|.|...+.. T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I~~ 78 (492) T protein:vir:94 1 MQF-IQLISQVAQALIKGGNILYP-SQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVK 78 (492) T ss_pred ChH-HHHHHHHHHHHhcCCceeec-CccchhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc Confidence 211 0111111111 12222 1121112211 1111 111112245567788888898988765533 Q ss_pred HHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHH Q lcl|Aclame:pro 65 KREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKK 143 (535) Q Consensus 65 ~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~ 143 (535) +...+..... .+..+-..-+-.|+++.+|+..+|++|.++++++..+ .....++++- .++++..... T Consensus 79 ~~~~~~~~~~----------~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~~~~d~~~~~~l~~~~--~n~~~~~~~~ 146 (492) T protein:vir:94 79 EPKPVDATGA----------VDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL--GNRFDDKLHS 146 (492) T ss_pred cccccccccc----------ccccccccccccchHHHHHHHHHhhhcccCceeccCchHHHHHHHHHH--hccHHHHHHH Confidence 2222221110 0111111113369999999999999999999997543 2333344442 2578999999 Q ss_pred HHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccce Q lcl|Aclame:pro 144 ALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTY 223 (535) Q Consensus 144 ~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~ 223 (535) +++.++.+|++|++|..+..+ +|-+..++|.+++-.--+... +..+.. +|.+..+. . T Consensus 147 ~~~~a~~~G~a~~~v~~d~dg-------------~~~~~~~~p~~~~~v~d~~~~-~~~~a~--ir~~~~~~-~------ 203 (492) T protein:vir:94 147 VLTGASNKGIEWLHPYLDEEG-------------EFKLFRVPAEQGIPIWTDKEH-EELEAF--IRMYKLEN-E------ 203 (492) T ss_pred HHHHHhhCCeEEEEEEecCCC-------------ceEEEEEcccceEEEEcCCCC-CceEEE--EEEEeecc-c------ Confidence 999999999999999766543 488999999997653211121 122322 33222221 1 Q ss_pred eeEEEEEeecCCceEEEEEEeeeccCCc--cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 224 VQQWRVLQLNAEGNYQVERWRRETQEEM--YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 224 ~~~~rvl~l~~~g~y~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) ..+.+++.. . +..|........ ......+..+....|+|+.||||.+.+.. .+.+.|.++..|..++. T Consensus 204 -~~~~~y~~~--~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~----~~~sd~e~v~~liDa~d 273 (492) T protein:vir:94 204 -TKVEYWDKV--T---VNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYN 273 (492) T ss_pred -eeEEEEecC--e---EEEEEEecCeeeeccccccccccccccccCCCccceEEecCCC----CCCCchHHHHHHHHHHH Confidence 122233322 1 112221111100 00111222344566999999999885432 35678899999999999 Q ss_pred hhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHh Q lcl|Aclame:pro 302 RNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMG 380 (535) Q Consensus 302 ~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lg 380 (535) +..|++...+.+.++|+++++|++.+...+.. -.++...++.++++++++|+......-. ...++.+++.|..++ T Consensus 274 ~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s 349 (492) T protein:vir:94 274 RRLSDLSNTFKDSNELTYVLKNYDDQELPEFK----RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFG 349 (492) T ss_pred HHHHHHHHHHHHhcCceeeeecCCcccchhhH----HHHhhccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999998766543321 1234556778899999999886654333 356788888887776 Q ss_pred hhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHH Q lcl|Aclame:pro 381 ANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERA 457 (535) Q Consensus 381 a~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~ 457 (535) .-.- ..-+++.|+.+..............+...++.++++++++++.+++...+. ..+.+.+.+..+...++.++ T Consensus 350 ~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~--~~i~v~f~~~~p~~~~e~~~ 427 (492) T protein:vir:94 350 QAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH--KDVDISFNYNKVANTELQVQ 427 (492) T ss_pred CCcCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ceeeEEecCCCCCCHHHHHH Confidence 5432 222345555555566677788888999999999999999999999854433 34555566666666788888 Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 458 ELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 458 al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) ++.++. |.||++|+++.| +.+ ++.++|.+||.+|-.......+...+ ++.+.++...+++-...- T Consensus 428 ~~~kl~--giiS~et~~~~l---~~v---~d~~~E~eri~~E~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~e 492 (492) T protein:vir:94 428 TAQQSM--GIVSHETVLENH---PFV---EDLQAELERIEQEQMEYNKQLPNLDD---GGADSAQQQERSNNKESE 492 (492) T ss_pred HHHHHh--ccCchHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHhhcccccc---ccCCCCccccCCccccCC Confidence 888874 899999988654 322 34677777776664322211111111 111111111111111111 No 18 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=100.00 E-value=6.7e-32 Score=191.51 Aligned_cols=450 Identities=13% Similarity=0.071 Sum_probs=264.4 Q ss_pred CCcccccCCC-------CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccch Q lcl|Aclame:pro 25 TSGLGPSLPN-------VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYN 97 (535) Q Consensus 25 ~~~~~~~M~~-------v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n 97 (535) .+|==+.|-+ ++.--..+....++++++.+.|.|...++ |+|+.. ...|+.. +++ .| T Consensus 1 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~Yy~G~~~i~-----~~~~~~--------~~~~~~~--~~~-~n 64 (485) T protein:vir:10 1 MTAPLPGQEEIEDPAIARDEMVSAFEDSTQNLKTNTSYYEAERRPE-----AIGVTV--------PIQMQSL--LAH-VG 64 (485) T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----hcCCCC--------Chhhhhh--hhh-cC Confidence 2222233332 33344567778889999999999976543 454421 1123322 333 59 Q ss_pred hHHHHHHHHhhhhhccccccc----cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHH Q lcl|Aclame:pro 98 VTARTLDGMMGQVFSRDPIRQ----LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQK 173 (535) Q Consensus 98 ~~~~tv~~l~G~lF~k~p~~~----~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~ 173 (535) +++.+|+.++++++-...+.. ....+..++.. |+++.+...+++.++.+|+||++|.....+... . T Consensus 65 ~~~~ivd~~~~~l~~~g~~~~~~~~~~~~~~~i~~~-----N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~-----~ 134 (485) T protein:vir:10 65 YPRLYVDSIAERQAVEGFRFGDADEADEELWQWWQA-----NNLDIEAPLGYTDAYVHGRSYITISRPDPQIDL-----G 134 (485) T ss_pred cHHHHHHHHHhhhcccceecCCCchhHHHHHHHHHh-----cCHhHHHHHHHHHHhhcCceEEEEeeCCccccc-----c Confidence 999999999999976554431 23346666653 789999999999999999999999765432211 1 Q ss_pred hccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccc Q lcl|Aclame:pro 174 LGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYY 253 (535) Q Consensus 174 ~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~ 253 (535) ....+|.+..++|++++-.. +...+ +....+++ ...+. ...++.+.+++.+ ..| .|+.... T Consensus 135 ~~~~~~~i~~~~p~~~~~~~-D~~~~-~~~~~~~~--~~~~~-----~~~~~~~~~y~~~--~~~---~~~~~~~----- 195 (485) T protein:vir:10 135 WDPNTPIIRVEPPTRMYAEI-DPRIG-RVSKAIRV--AYDAE-----GNEIQAATLYTPN--DIF---GWYRVEN----- 195 (485) T ss_pred cCCCeeEEEEEccceeEEEE-cCCCC-ceeEEEEE--EEeeC-----CCeEEEEEEEeCC--eEE---EEEEcCC----- Confidence 11235899999999976432 32222 23333332 22111 1334555556543 222 2222211 Q ss_pred cccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch- Q lcl|Aclame:pro 254 SYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE- 330 (535) Q Consensus 254 ~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~- 330 (535) .+.......|++++||||.| +..+.+...+.+.|. +|..|..++.+..|++..++++.++|+++++|.+.+... T Consensus 196 ---~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~ 272 (485) T protein:vir:10 196 ---EWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGV 272 (485) T ss_pred ---ceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHhcCCcccccc Confidence 13333445699999999976 444555556788886 588999999999999999999999999999998654322 Q ss_pred -hccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchH-HHHHHHHHH Q lcl|Aclame:pro 331 -DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFG-EAQQEEASE 403 (535) Q Consensus 331 -d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~-~a~~~~~~~ 403 (535) +......+..+...+|.+| +++++|.|+..+++. .+.++.+..++..... ..+...+.+.+++ +........ T Consensus 273 ~~~~~~~~~~~~~~~i~~~~-~~d~k~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l 351 (485) T protein:vir:10 273 DPETGQTLFDAYLARILAFE-DAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRL 351 (485) T ss_pred cccccchhhhhcccceeccC-CCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHH Confidence 2222233445566677665 456677788776654 3455555555544322 2233333343443 445555666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CceeEEEEecccCCccCCHHHHHHHHHHHhcC--CCCHHHHHHHHHhC Q lcl|Aclame:pro 404 QSILSACTKNVSMAFRKALRWANQFQTGIVN-DETVEYNLNTDFPAARLTPNERAELILEWQQG--AITFKEMRAGLRRA 480 (535) Q Consensus 404 ~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~-~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G--~is~et~~~~L~r~ 480 (535) ......+...+..+|+++++++..+.+.... .+...+++.+.-......++.++++.+++++| .+|++|+++. . T Consensus 352 ~~k~~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~---l 428 (485) T protein:vir:10 352 IKKVERKNSIFGGAWEEAMRLAYRMMKGGDVPPDMLRMETVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKD---M 428 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccceeeeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHh---C Confidence 7777778888889999999999888764221 12234444443333444688999999999977 8999999864 3 Q ss_pred CCCCccCCHHHHHHHHHhc-------hh-hcccCCCcCCCCC---CCcccccccccccCC Q lcl|Aclame:pro 481 GVASEDDAKAETEGKATVE-------FI-AKTAAAGKVGDAA---SGGTNKAKLNNGNGG 529 (535) Q Consensus 481 gvl~~~~~~eee~~~i~~e-------~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 529 (535) |+.++. .+++.+++++ .. ....+.+..++.. .....-++.+.|+|+ T Consensus 429 g~~~~~---~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 429 GYSIAE---REEMRRWDEEEAAMGLGLIGTMVDPNPTVPGSPSPAPAPKPAALESGGDAA 485 (485) T ss_pred CCCHhH---HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccccCcCCCCCCCCC Confidence 654322 2222222221 11 1111222111111 111111222333333 No 19 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=100.00 E-value=6.9e-32 Score=191.41 Aligned_cols=450 Identities=14% Similarity=0.073 Sum_probs=260.5 Q ss_pred ccccCCCCCccCHH---------HHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchh Q lcl|Aclame:pro 28 LGPSLPNVGYQRVE---------FGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNV 98 (535) Q Consensus 28 ~~~~M~~v~~~hp~---------y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~ 98 (535) +..-+|.-+...|+ +....++++++.+.|.|...++ ||+... ...++.++ .-.|+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl~~l~~Yy~G~~~i~-----~~~~~~--------~~~~~~~~---~~~n~ 64 (484) T protein:vir:77 1 MTSPLQKQENVDPEKAREEMLNLFTERTQDLGDNTAYYESERRPD-----AVGVTV--------PQQMQKLL---AHVGY 64 (484) T ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----hccccc--------chhHHhhh---hhcCc Confidence 33344432333333 4556678889999999977654 343311 11122222 34699 Q ss_pred HHHHHHHHhhhhhccccccc----cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHh Q lcl|Aclame:pro 99 TARTLDGMMGQVFSRDPIRQ----LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKL 174 (535) Q Consensus 99 ~~~tv~~l~G~lF~k~p~~~----~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~ 174 (535) .+.+|++++++++-...+.. ....+..+++. |+++....++++.++.+|++|++|.....+.. ... T Consensus 65 ~~~ivd~~~~~l~~~g~~~~~~~~~~~~l~~i~~~-----N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~-----~~~ 134 (484) T protein:vir:77 65 PRLYIDAIAARQELEGFRLGGADKADEQLWDWWQA-----NDLDIESTLGHTDSLVHGRSYITISKPDPNID-----PGV 134 (484) T ss_pred HHHHHHHHHhhhccCceecCCcchhHHHHHHHHHh-----cCHhHHHHHHHHHHhhcCceEEEEecCCCCcc-----ccc Confidence 99999999999976654442 12335556554 68999999999999999999999975543321 111 Q ss_pred ccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccc Q lcl|Aclame:pro 175 GLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYS 254 (535) Q Consensus 175 ~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~ 254 (535) ...+|.|+.++|++++-.- +... ++.+..+++ +..+ ++ ..+..+.+++.+. +| .|.... T Consensus 135 ~~~~~~i~~~~p~~~~~~~-D~~~-~~~~~a~~~--~~~~-~~----~~~~~~~~y~~~~--~~---~~~~~~------- 193 (484) T protein:vir:77 135 DPEVPIIRVEPPTNLYAQI-DPRT-RQVMRAIRA--IEDE-EG----NEVIGATLYLPNN--TV---IWNRED------- 193 (484) T ss_pred ccccceEEEeccceeEEEe-cCCC-CceEEEEEE--EEee-cC----CcEEEEEEEecCe--EE---EEEecC------- Confidence 2345889999999997543 2222 223322222 2222 11 2344455555532 22 222221 Q ss_pred ccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch-- Q lcl|Aclame:pro 255 YSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE-- 330 (535) Q Consensus 255 ~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~-- 330 (535) +.+..++...|++|.||||.| +..+.+...|.+.|. +|..|..++.+..|++..++++.++|+++++|.+.+... T Consensus 194 -~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~ 272 (484) T protein:vir:77 194 -GQWVQVANVAHNLEMVPVIPIPNRTRLSDLYGTTEITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVKGEELGVD 272 (484) T ss_pred -CceEeeccccCCCCCcceEEeccccccCccCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCCcchhccc Confidence 123344455699999999966 444555556788886 588999999999999999999999999999998654322 Q ss_pred hccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchHHH-HHHHHHHH Q lcl|Aclame:pro 331 DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFGEA-QQEEASEQ 404 (535) Q Consensus 331 d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~~a-~~~~~~~~ 404 (535) +......+..+...+|.+|. .++++.|+..+++. .+.++.+..++..... ..+...+.+.+++.| +....... T Consensus 273 ~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~ 351 (484) T protein:vir:77 273 PETGQTLFDAYLARILAFED-HESKAQQFSAAELRNFVDALDALDRKAAAYTGLPPYYLSFSSENPASAEAIRSSESRLV 351 (484) T ss_pred ccccchhhhhhhhhhcccCC-CCceeEeecCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHHHH Confidence 11122234455667777763 35667788777654 3455555555544332 223333334344433 45555656 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceeEEEEecccCCccCCHHHHHHHHHHHhcC--CCCHHHHHHHHHhCC Q lcl|Aclame:pro 405 SILSACTKNVSMAFRKALRWANQFQTGIVND-ETVEYNLNTDFPAARLTPNERAELILEWQQG--AITFKEMRAGLRRAG 481 (535) Q Consensus 405 S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~-~~~~v~~n~df~~~~~d~~~~~al~~l~~~G--~is~et~~~~L~r~g 481 (535) .....+...+..+|+++++++....+..... ....+.+.+........++.++++.+++++| .+|++|+++.| | T Consensus 352 ~ka~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l---~ 428 (484) T protein:vir:77 352 KTVERKNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDM---G 428 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcC---C Confidence 6667777789999999999999987643211 1223444443344555788999999999986 89999988655 5 Q ss_pred CCCccCCHHHHHHHHHhc--hh------hcccCCCcCCCCCCCcccccccccccCCCCCCC Q lcl|Aclame:pro 482 VASEDDAKAETEGKATVE--FI------AKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAG 534 (535) Q Consensus 482 vl~~~~~~eee~~~i~~e--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (535) +.++ ..++..++..+ .. ......++.+..+ ...+.....-+.+.+.+| T Consensus 429 ~~~~---~~~e~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 484 (484) T protein:vir:77 429 YSIT---EREEMRKWDEEEQAQGLGLMGTMFGTDPSGGGNP--DNPETPEPQPNPAEEAAA 484 (484) T ss_pred CChh---HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC--CCCCcccccCCCccccCC Confidence 5432 22222232222 11 1111111111111 111111111222333333 No 20 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=100.00 E-value=2.4e-31 Score=188.48 Aligned_cols=435 Identities=9% Similarity=0.023 Sum_probs=256.2 Q ss_pred CCCCCcc-----C----------------------HHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHH Q lcl|Aclame:pro 32 LPNVGYQ-----R----------------------VEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRR 84 (535) Q Consensus 32 M~~v~~~-----h----------------------p~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~ 84 (535) |.||+++ | ..+....++++.+...|.|...+..+.. + ... T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~----~---------~~~ 67 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPDILDAPP----K---------RDV 67 (478) T ss_pred CccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhcccc----c---------ccc Confidence 8877761 1 2233344555556666666543322110 0 001 Q ss_pred HHHHHHhh---hccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEee Q lcl|Aclame:pro 85 RYETYLQR---AIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDY 160 (535) Q Consensus 85 ~Y~~rl~r---A~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~ 160 (535) .+.....+ -.-.|+.+.+|+..+|++|.++|+++.++ .....+.++ -+++++.....+++.++.+|++|++|+. T Consensus 68 ~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~d~~~~~l~~~--~~n~~~~~~~~~~~~~~~~G~~~~~~~~ 145 (478) T protein:vir:10 68 NGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTFGVDNDKALKQIQHT--LNHKWDDKLVDILTAASNKGIEWVQPYV 145 (478) T ss_pred ccccccccccceeccchHHHHHHHHHhhhccCCeeeecCChHHHHHHHHH--HhcCHHHHHHHHHHHHHhcCeEEEEEEe Confidence 11111111 13469999999999999999999997543 222233333 1357899999999999999999999986 Q ss_pred cCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEE Q lcl|Aclame:pro 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQV 240 (535) Q Consensus 161 p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v 240 (535) ...+ +|.+..++|.+++----+.. ...+..+ ++....+ . .+.+.+++.+.. T Consensus 146 d~~g-------------~~~~~~~~p~~~~~i~d~~~--~~~~~~~-v~~~~~~-~-------~~~~~~y~~~~i----- 196 (478) T protein:vir:10 146 DEEG-------------EFKTFRVPAEQAVPIWTNKE--RDELQAF-IRVYELD-G-------AERVEYWTKDDV----- 196 (478) T ss_pred cCCC-------------eeEEEEEcccceEEEEcCCC--CCceEEE-EEEEEec-C-------ceEEEEEeCCeE----- Confidence 6544 48888999988763211111 2234433 2222211 1 223444443221 Q ss_pred EEEeeeccCC------ccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 241 ERWRRETQEE------MYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVA 314 (535) Q Consensus 241 ~~w~~~~~~~------~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~ 314 (535) ..|+...... .......+.......|+++.||||.+.+.. .+.+.+.++..|-.+.....|++...+.+. T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n~~----~g~sd~~~v~~liDa~~~~~S~~~~~~~~~ 272 (478) T protein:vir:10 197 TYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFKNNP----QEVSDLFMYKTIIDALDKRLSDTQNTFDES 272 (478) T ss_pred EEEEEcCCeeeccccccccccccceecccccccCCccceEEeccCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 1122111100 001112233344567999999999885432 456788999999999999999999999999 Q ss_pred cCceeEeeCCCCccchhccCcceeeecCcccccCC--CCCccceeecCcchhH-HHHHHHHHHHHHHHhhhhh---cccc Q lcl|Aclame:pro 315 GQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP--QGATAGILQITPNSVP-FEAMTHKESQMIAMGANLL---VKSG 388 (535) Q Consensus 315 ~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp--~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~l---~~~~ 388 (535) +.|+++++|.+.+...+... .+....++.++ ++++++|+..+...-. ...++.+.+.|..++.-.- ...+ T Consensus 273 ~~p~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~ 348 (478) T protein:vir:10 273 VELIYILKGYEGEDMKDFMH----NLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFG 348 (478) T ss_pred hCceeeeecCCccccchhhh----hhhhcceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCccccc Confidence 99999999987654332211 12222334343 5688999987654333 3667777777776654331 2223 Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 389 GNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAI 468 (535) Q Consensus 389 ~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~i 468 (535) ++.|+.+..............+...++.+|.+++++++.+.|...+...+ ++.+........++.+++++++ +|.| T Consensus 349 ~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~g~~~~~~~i--~i~f~~~~p~d~~e~a~~~~kl--~g~i 424 (478) T protein:vir:10 349 NSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVKVQDI--EITFNFNVMVNELENSQIAMNS--TGLL 424 (478) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc--eEEecCCCCCCHHHHHHHHHHH--hCCC Confidence 45566555666666777788888899999999999999999866554444 4444455555567788888876 7899 Q ss_pred CHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 469 TFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 469 s~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) |++|+++.| +.+ .+.++|.+||.+|-............+..+.-+... .+.++. T Consensus 425 S~et~~~~l---~~v---~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 478 (478) T protein:vir:10 425 SKETILSNH---AWV---EDPVAEMERIEQENIELNQQLPDIEEGLNGEQQRQS----ENNQPE 478 (478) T ss_pred ChHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHhhccccccccCCCCCCCC----CCCCCC Confidence 999988654 322 346677788876633221111111111000000000 011111 No 21 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=100.00 E-value=7.1e-32 Score=191.34 Aligned_cols=416 Identities=11% Similarity=0.075 Sum_probs=242.3 Q ss_pred hCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcccccc---ccCHHHHHHHhccCCCCCCHHHHHHHHH Q lcl|Aclame:pro 69 YLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIR---QLPPALEAIVEDIDGEGVSLDQQAKKAL 145 (535) Q Consensus 69 YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~---~~p~~l~~l~~d~d~~G~~L~~~~~~~~ 145 (535) |||+- ....|+....+++ .|+++.+|++++++++-...+. +....+..++++ |+++..+..++ T Consensus 1 ~l~~~--------~~~~~~~~~~~~v-~n~~~~ivd~~~~~l~~~gf~~~d~~~~~~~~~i~~~-----N~~d~~~~~~~ 66 (434) T protein:vir:98 1 MLPKN--------AEQAFLDFQRKAR-TNFCGLIANASVHRLLALGVTGPDGEPDTRASRWWQA-----NRLDSRQKLVW 66 (434) T ss_pred CCCCC--------ccHHHHHhhhhhh-ccchHHHHHHHHhhhccCceecCCCchHHHHHHHHHh-----cChhHHHHHHH Confidence 99873 3346888777765 5999999999999996544332 233445566654 78999999999 Q ss_pred HHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 146 GYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 146 ~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) +.++.+|++|++|.....+.. .....+|.|..++|++++- -++...+ .+...+ +- +..+.++.. T Consensus 67 ~~a~i~G~ay~~v~~~~~~~~------~~~~~~~~I~~~~p~~~~~-i~D~~~~--~~~~ai-~~-~~~~~~~~~----- 130 (434) T protein:vir:98 67 RMAMAQSAGYMLVGAHPTRTE------DNGRPSPLITMEHPSECIV-EYDPETG--EPLVGL-KV-WHNDIDGFG----- 130 (434) T ss_pred HHHhhcCceEEEEecCCCccc------ccCCceeEEEEeccceeEE-EEeCCCC--ceEEEE-EE-EEeccCCce----- Confidence 999999999999986543321 0112368899999999862 2333333 333332 21 222222211 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccc----eeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSK----HVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~----~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) .-+++..+....|. +.+.. .......... ........|++|.||||.|-+.......+.+.+.++.+|..++. T Consensus 131 ~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~ 207 (434) T protein:vir:98 131 YARVFFDDTSFPYR-TRERT--GARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVN 207 (434) T ss_pred EEEEEEeCcEEEEE-Eeecc--ccccccccccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHH Confidence 11222222111111 11110 0000001111 11223456899999999764333223357788999999999999 Q ss_pred hhHHHHHHHHHHhcCceeEeeCCCCccchhccCc-----ceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHH Q lcl|Aclame:pro 302 RNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKD-----FKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKES 374 (535) Q Consensus 302 ~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~-----~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~ 374 (535) +..|+...++++.++|+++++|.+.+...+.... ..+..+.+.+|.+| +.++++.|+..+.+. ...|+.+.. T Consensus 208 ~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~q~~~~~~~~~~~~l~~~i~ 286 (434) T protein:vir:98 208 LGILNRMAASRFSGFRQKWIKGHKFAKRTDPATGMTVVDQPFVPSPSAVWASE-GENTQFGQLDATDLSGFLKEHASDVR 286 (434) T ss_pred HHHHHHHHHHHHhcchhhhhcCCCcccccccccccchhhhhhhccccccccCC-CCCceEEEecCcchHHHHHHHHHHHH Confidence 9999999999999999999999876544332211 11233444555544 556778888776653 345666666 Q ss_pred HHHHHhh---hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccC Q lcl|Aclame:pro 375 QMIAMGA---NLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARL 451 (535) Q Consensus 375 qm~~lga---~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~ 451 (535) ++..... ..+....++.|+.+.+............+...++.+|.+++++++.+.|...+. ..+.+.+....... T Consensus 287 ~~~~~~~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~--~~~~v~w~~~~~~s 364 (434) T protein:vir:98 287 DMLTISQTPTYLYATDLVNISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDY--TEAEVRWANPAHVT 364 (434) T ss_pred HHhcccCCCHHHhccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhh--eeeeEEecCCCCCC Confidence 6644332 222333345555555666667777777888888999999999999998754332 33444443344555 Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCc-ccccccccc Q lcl|Aclame:pro 452 TPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGG-TNKAKLNNG 526 (535) Q Consensus 452 d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 526 (535) .++.++++.+++++| +|++++++.| |+.+ +..++++++.+++.......++..+++.++. .++.....| T Consensus 365 ~~~~ada~~kl~~~g-~~~e~~~~~l---g~~~--~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 365 MAVKADAATKLKSIG-YPLDVIAEEL---DESP--ARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAVDG 434 (434) T ss_pred HHHHHHHHHHHHhcC-CcHHHHHHhC---CCCH--HHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCCCC Confidence 688999999999887 6998887643 4321 1222222222222211111111112221111 111111111 No 22 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=100.00 E-value=3.4e-31 Score=187.63 Aligned_cols=462 Identities=9% Similarity=0.003 Sum_probs=265.3 Q ss_pred CCcchhhhhhhhhcce--ecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKV--LIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSR 78 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~ 78 (535) |+--+-.|-.-+.-+. .|-+++-.+.-+ |..-...+....++++++.+.|.|...+..+...+-.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~~~~~~~~~~---- 70 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEM------ILRLVREHKENIDNITMGERYYNHHPDILDAPFKRDVNGD---- 70 (478) T ss_pred CccccccCCchhhhHHHHHhhhccCChHHH------HHHHHHHHHHHHHHHHHHHHHhcccccccccchhhhcccc---- Confidence 3322211111111111 111221111111 1222334556677788888888886654332221111100 Q ss_pred ChhhHHHHHHHH-hhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEE Q lcl|Aclame:pro 79 DEEQRRRYETYL-QRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAI 156 (535) Q Consensus 79 ~~E~~~~Y~~rl-~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~v 156 (535) .++.+- .| .-.|+++.+|+..+|++|.++|+++..+ .....+.++- .++++.....+++.++.+|++|+ T Consensus 71 ------~~~~~~~~k-i~~n~~k~ivd~~~~yl~g~p~~~~~~~~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~~~~ 141 (478) T protein:vir:10 71 ------YDETKPDWR-MYTNYHQNLVDQKVAYAVANPVTFGVDNDKALKQIQHTL--NHKWDDKLVDILTAASNKGIEWV 141 (478) T ss_pred ------cccccccce-eccchHHHHHHHHhhhhcccCceeecCChHHHHHHHHHH--hccHHHHHHHHHHHHhhCCeEEE Confidence 000000 01 2269999999999999999999986532 2222222221 25899999999999999999999 Q ss_pred EEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCc Q lcl|Aclame:pro 157 FTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEG 236 (535) Q Consensus 157 lVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g 236 (535) +|+.+..+ +|-+..++|.+++-.-.+... ..++.++ +.+. ..+ .+.+.+++.+.. T Consensus 142 ~v~~d~~~-------------~~~~~~~~p~~~~~v~d~~~~--~~~~~~i-r~~~-~~~-------~~~~~~y~~~~i- 196 (478) T protein:vir:10 142 QPYVDEEG-------------EFKTFRVPAEQAVPIWTNKER--DELQAFI-RVYE-LDG-------AERVEYWTKDDV- 196 (478) T ss_pred EEEecCCC-------------ceEEEEEcccceEEEEcCCCC--CceEEEE-EEEe-eeC-------ceEEEEEeCCcE- Confidence 99876544 488999999998643222222 2354432 2222 111 233444444321 Q ss_pred eEEEEEEeeeccC------CccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 237 NYQVERWRRETQE------EMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM 310 (535) Q Consensus 237 ~y~v~~w~~~~~~------~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~ 310 (535) ..|+..... ........+.......|+++.||||.+.+.. .+.+.|.++..|..++....|++... T Consensus 197 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~----~g~sd~e~v~~liDa~~~~~S~~~~~ 268 (478) T protein:vir:10 197 ----TFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNP----QEVSDLFMYKTIIDALDKRLSDTQNT 268 (478) T ss_pred ----EEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCC----CCCCcHHHHHHHHHHHHHHHHHHHHH Confidence 222222111 0011112233445567999999999885432 35778899999999999999999999 Q ss_pred HHHhcCceeEeeCCCCccchhccCcceeeecCcccccC--CCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhhh--- Q lcl|Aclame:pro 311 AFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPL--PQGATAGILQITPNSVP-FEAMTHKESQMIAMGANLL--- 384 (535) Q Consensus 311 l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~l--p~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~l--- 384 (535) +.+.++|+++++|.+.+...+... .+....++.+ +++++++|+..+...-. ...++.+.+.|..++.-+- T Consensus 269 ~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~ 344 (478) T protein:vir:10 269 FDESVELIYILKGYEGEDMKDFMH----NLKYYKAISVAGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQ 344 (478) T ss_pred HHHhhCcceeeecCCcccccchhh----hhhhCceeEecCCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCc Confidence 999999999999987654332211 1112223333 45688999987764433 3567788777776654321 Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHh Q lcl|Aclame:pro 385 VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQ 464 (535) Q Consensus 385 ~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~ 464 (535) ...+++.|+.+..............+...++.++.+++++++.+.|...+...++ +.+.+.......+.++++.++ T Consensus 345 ~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~d~~~i~--i~f~~~~p~~~~e~~~~~~~~-- 420 (478) T protein:vir:10 345 DKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYRLDVRVQDIE--ITFNFNVMVNELENSQIAMNS-- 420 (478) T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccce--EEeCCCCCCCHHHHHHHHHHH-- Confidence 2223455555556666777888889999999999999999999998765544444 444445545456777777766 Q ss_pred cCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCC Q lcl|Aclame:pro 465 QGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGN 531 (535) Q Consensus 465 ~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (535) +|.+|++|+++.+ + ..++.++|.++|.+|-.......+... .+.++..+...-+++.. T Consensus 421 ~g~iS~et~i~~~---~---~v~d~~~E~~ri~~E~~~~~~~~~~~~---~~~~d~~~~~~~d~~~e 478 (478) T protein:vir:10 421 TGLLSKETILGNH---S---WVQDPVAEMERIEQENIELNQQLPDIE---EGLNDEQQRQSEDNQSE 478 (478) T ss_pred hCCCChHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHHhccccC---CCCcccccccCcCCCCC Confidence 6899999987543 2 223466777777666433221111111 11122111111111111 No 23 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=100.00 E-value=1.6e-31 Score=189.41 Aligned_cols=460 Identities=9% Similarity=0.018 Sum_probs=267.5 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHH--HHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEF--GEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSR 78 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y--~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~ 78 (535) |. ++ -+.|..---....+-...++...=-++ ....+.++++.+.|.|...+..+...+.-. .... T Consensus 1 ~~--------~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~yy~g~~~i~~~~~~~~~~-~~~~- 67 (479) T protein:vir:79 1 ML--------NI---YISETDLIKVQLKKESTINLVKVIEHYILKHRPEKYKQGEEYYYGNTDVNNKRRYYLLD-GAKV- 67 (479) T ss_pred CC--------Cc---eecccceEeeccccCChhHHHHHHHHHHhhhhHHHHHHHHHHhccCCcccccccccccc-cccc- Confidence 00 00 000110000000000000000000001 114567888888888876654322111100 0000 Q ss_pred ChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEE Q lcl|Aclame:pro 79 DEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIF 157 (535) Q Consensus 79 ~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vl 157 (535) ...++.. .| .-.|+++.+|+..+|++|.++|+++.++ ....+++.... ++++..+..+++.++.+|++|++ T Consensus 68 ----~~~~~~~-~k-i~~~~~~~Ivd~~~~~l~g~p~~~~~~~~~~~~~~~~~~~--n~~~~~~~~~~~~~~~~G~~~~~ 139 (479) T protein:vir:79 68 ----DDFTKVN-NK-AINNYHKLLVDQKVGYSVGNPIVFNADDDNLTKLLNDLLG--EEFDDTITELYLNASNKGVEWLH 139 (479) T ss_pred ----cccccCc-ce-eecchHHHHHHHHHhhhhcCCceeccCCHHHHHHHHHHHh--cCHHHHHHHHHHHHHhcCeEEEE Confidence 0001111 12 2379999999999999999999997654 45566665533 68999999999999999999999 Q ss_pred EeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCce Q lcl|Aclame:pro 158 TDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGN 237 (535) Q Consensus 158 VD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~ 237 (535) |..+..+ +|.+..++|.+++-. ++... ...+..++......+.++ +.+..+-+++.+ +. T Consensus 140 v~~d~~~-------------~~~i~~~~p~~~~~v-~d~~~-~~~~~~~ir~y~~~~~~~----~~~~~~e~y~~~--~i 198 (479) T protein:vir:79 140 PYINRKG-------------EFKYVIIPAEEAIPI-WDSKR-QRELVAFIRFYYIEDIDG----NKIKRVEYYTEN--DI 198 (479) T ss_pred EEeCCCC-------------ceEEEEEccceeEEE-EeCCC-CCceEEEEEEEEEeecCC----ceEEEEEEEeCC--cE Confidence 9876544 488999999998654 22221 223443332222222221 233334344332 12 Q ss_pred EEEEEEeeeccCCc-----------cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 238 YQVERWRRETQEEM-----------YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSAD 306 (535) Q Consensus 238 y~v~~w~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sd 306 (535) ..|+....... ......+.......|+++.||||.+.+.. .+.+.|.++..|..++....|+ T Consensus 199 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~----~g~sd~~~v~~liDa~d~~~S~ 271 (479) T protein:vir:79 199 ---TYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNE----KCVSDLTFYKSLIDIYDNNIST 271 (479) T ss_pred ---EEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCCC----CCCcchhhhHHHHHHHHHHHHH Confidence 12222221110 00111222335567999999999885433 3567789999999999999999 Q ss_pred HHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhh--h Q lcl|Aclame:pro 307 YEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGAN--L 383 (535) Q Consensus 307 l~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~--~ 383 (535) +...+.+.+.|+++++|.+.+...+... .+....++.++++++++|++.+.+.-. ...++.+++.|...+.- + T Consensus 272 ~~~~~~~~~~~~~v~~g~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~ 347 (479) T protein:vir:79 272 LADNLDEIQEVIYVLKEYPGTSLQEFID----NIRYYKSIKVDGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNP 347 (479) T ss_pred HHHHHHHhhCceeeeecCCccccccchh----hhhhccceecCCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCcccc Confidence 9999999999999999986544332211 123446777899999999997764333 45688888888776532 2 Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCceeEEEEecccCCccCCHHHHHHHHH Q lcl|Aclame:pro 384 LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIV--NDETVEYNLNTDFPAARLTPNERAELIL 461 (535) Q Consensus 384 l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~--~~~~~~v~~n~df~~~~~d~~~~~al~~ 461 (535) -....++.|+.+..............+...+++++.+++++++.+++... +.+...+++.+.........+.++++.+ T Consensus 348 ~~~~~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~i~f~~~~p~~~~~~a~~~~k 427 (479) T protein:vir:79 348 ESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKSYDYKTVQITFNHSMIINEAEKIDMAAK 427 (479) T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHH Confidence 22334566666656666777778888888999999999999999876432 1122334444444444556778888888 Q ss_pred HHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccccc Q lcl|Aclame:pro 462 EWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKA 521 (535) Q Consensus 462 l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~ 521 (535) + .|.||.||+++.| +.+ .+.++|.+||..|-...........+...+.++++ T Consensus 428 l--~g~iS~et~l~~l---~~v---~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~e~ 479 (479) T protein:vir:79 428 S--TGIVSDETIVSNH---PWV---EDVNDELERLKKQEDTQKEYDDLIPNNQDGVIDET 479 (479) T ss_pred H--hccCcHHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHHHHhccCcccCCCcCcC Confidence 7 4899999988644 333 34566777776663322111111122222223333 No 24 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=100.00 E-value=8.7e-31 Score=185.38 Aligned_cols=456 Identities=10% Similarity=-0.014 Sum_probs=265.2 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCC-ccCH--------HH-HHHHHHHHHHHHHhcChHHHHHHHhhhC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVG-YQRV--------EF-GEMLPKWRKIMDCLSGQEAIKAKREEYL 70 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~-~~hp--------~y-~~~~~~w~~i~d~~~G~~~~~~~g~~YL 70 (535) |. |-.-.+|-----+++.--+.|++.. .-.+ ++ ....++|+++.+.|.|.... ++ T Consensus 1 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~------i~ 65 (481) T protein:vir:10 1 MT---------VYTINNINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTD------IL 65 (481) T ss_pred Ce---------eEeeehhchhcccccCceeeeecchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc------cc Confidence 10 0001111111122233334455311 1111 22 24567788888888886321 11 Q ss_pred CCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-----HHHHHHHhccCCCCCCHHHHHHHHH Q lcl|Aclame:pro 71 PMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-----PALEAIVEDIDGEGVSLDQQAKKAL 145 (535) Q Consensus 71 P~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-----~~l~~l~~d~d~~G~~L~~~~~~~~ 145 (535) .+.. ....+..+..+-.-.|+++.+|+..+|++|.++|+++.+ +.+..++++ ++++.+++.++ T Consensus 66 ~~~~-------~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~-----n~~~~~~~~~~ 133 (481) T protein:vir:10 66 AGER-------RLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNPITITHQDNQTNDKIIELNDL-----NDADEVNSDLA 133 (481) T ss_pred cCcc-------ccccccccccceeecchHHHHHHHHHhhhccCCceEecCChhHHHHHHHHHHh-----cChhHHHHHHH Confidence 1100 001122222222447999999999999999999998643 335555544 68999999999 Q ss_pred HHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 146 GYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 146 ~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) +.++.+|++|++|..+..+ +|.+..++|.+++-+--+.. . ..+..+ ++.......+ .+.+. T Consensus 134 ~~~~~~G~~~~~~~~d~dg-------------~~~i~~~~p~~~~~v~d~~~-~-~~~~~~-i~~~~~~~~~---~~~~~ 194 (481) T protein:vir:10 134 LNLSIYGRAYEIVYRDFED-------------RDTFKVLDPKSTFVVYDQTL-D-KKVVAG-VRYFEKQDKD---KVPVQ 194 (481) T ss_pred HHHHhcCeEEEEEEeCCCC-------------eEEEEEEcccceEEEEcCCC-C-CceEEE-EEEEEEeeCC---CceEE Confidence 9999999999999755433 48899999999875422221 1 233332 2322222221 23444 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+.+++.+ ..| .|+... +.+..++...|+++.||||.+.... .+.+.+.++..|..++.+..| T Consensus 195 ~~~~y~~~--~i~---~~~~~~--------~~~~~~~~~~~~~g~vPvv~~~n~~----~g~~~~~~v~~lida~~~~~s 257 (481) T protein:vir:10 195 HVEVYTTD--KIY---YIEIKG--------GTYHRVEEVEHYYNDVPIIEYLNDQ----FKQGDFENVIALIDLYDSAQS 257 (481) T ss_pred EEEEEecC--eEE---EEEecC--------CceeecccccccCCceeEEEeecCC----CCCCchhhHHHHHHHHHHHHH Confidence 55555543 222 343221 1233445567999999999875432 356778999999999999999 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchhcc---CcceeeecCcccccC-CCCCccceeecCcchhH-HHHHHHHHHHHHHHh Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVEDVF---KDFKVHLGSRAIIPL-PQGATAGILQITPNSVP-FEAMTHKESQMIAMG 380 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d~~---~~~~i~iG~~~~~~l-p~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lg 380 (535) ++...+.+.++|+++++|......++.. ....+.+........ ..+++++|+..+...-. ...++.+.+.|..++ T Consensus 258 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s 337 (481) T protein:vir:10 258 DTANYMTDLNDAMLAIIGNVDLDSEDAKAFRDANMIHLEPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYT 337 (481) T ss_pred HHHHHHHHhcCceeEeecCcCCCccchhhhhhccceeccccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHh Confidence 9999999999999999986443322211 111122222222221 23567888877654332 466788888887776 Q ss_pred hhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC--CceeEEEEecccCCccCCHHH Q lcl|Aclame:pro 381 ANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN--DETVEYNLNTDFPAARLTPNE 455 (535) Q Consensus 381 a~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~--~~~~~v~~n~df~~~~~d~~~ 455 (535) .-+- ...+++.|+.+.....+........+...++.+|++++++++++++.... .+...+++.+........++. T Consensus 338 ~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~~~~~~~~ 417 (481) T protein:vir:10 338 NTPDLNDEQFSGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLKQHNYAELTITFTPNLPKSMMES 417 (481) T ss_pred CCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccceeeEEeCCCCCcCHHHH Confidence 4332 22234555555555566777788888899999999999999999764321 122345555555555556788 Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCC Q lcl|Aclame:pro 456 RAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAG 534 (535) Q Consensus 456 ~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (535) ++++.++ .|.||++|+++.| +.+ ++.++|.+||++|-..........+.+. ...++.++-.+.| T Consensus 418 a~~~~kl--~g~is~et~~~~l---~~i---~d~~~E~~ri~~E~~~~~~~~~~~~~~~-------~~~~~~~~dd~~g 481 (481) T protein:vir:10 418 INAFNAL--SGGVSESTRLSLL---DFI---DNPKEELEKMQEEEAQREKQADKRGYGE-------AFENHLNVDDSNG 481 (481) T ss_pred HHHHHHH--hccCChHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHhhhhhccCCc-------cCCCCCCCCCCCC Confidence 8888887 4899999988654 322 3467778888766433222111111100 0011111111222 No 25 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=100.00 E-value=1.1e-30 Score=184.85 Aligned_cols=444 Identities=11% Similarity=0.049 Sum_probs=263.4 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCH-----------------------HHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRV-----------------------EFGEMLPKWRKIMDCLS 57 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp-----------------------~y~~~~~~w~~i~d~~~ 57 (535) |- =-++|| .+.+|. .+....++++++.+.|. T Consensus 1 ~~-------------------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~ 54 (474) T protein:vir:95 1 MF-------------------------NIIRMP-WDKPYGEEVVEQLKPQFETQEEMIIRLIDDHRKQLDKITVGQRYYD 54 (474) T ss_pred Cc-------------------------ceeecC-CCCchhhHHHHhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 10 112333 111111 24455666777777777 Q ss_pred ChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCC Q lcl|Aclame:pro 58 GQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVS 136 (535) Q Consensus 58 G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~ 136 (535) |...+..+-..+... ... .......|.+ .|+.+.+++..++++|.++++++.++ ....+++.+- .++ T Consensus 55 g~~~i~~r~~~~~~~-----~~~----~~~~~~~ki~-~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~--~n~ 122 (474) T protein:vir:95 55 KDNDIVKQMKKVDVY-----GNI----DYDKPDWRIT-TNFHQNLVDQKVSYVASKPVTYSCEDESVLKIIHDVL--DTR 122 (474) T ss_pred ccCchhccccccccc-----ccc----ccccccceec-cchHHHHHHHHHhhhccCCceeccCchHHHHHHHHHH--hcc Confidence 765442211000000 000 0000111222 59999999999999999999998653 3444454442 257 Q ss_pred HHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC Q lcl|Aclame:pro 137 LDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD 216 (535) Q Consensus 137 L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~ 216 (535) ++.....+++.++.+|+||++|..+..+ +|-+..++|.+++-.-.+... ..+..+ ++.+..+. T Consensus 123 ~~~~~~e~~~~~~~~G~~~~~v~~d~~~-------------~~~i~~~~p~~~~~v~d~~~~--~~~~~~-i~~~~~~~- 185 (474) T protein:vir:95 123 WDNKLIDILTATSNKGIDWLQVYINENG-------------EMKLFRVPAEQAIPIWVDKER--EELKSF-IRYYKFNN- 185 (474) T ss_pred HHHHHHHHHHHHhhcCcEEEEEEecCCC-------------ceEEEEEcccceEEEEcCCCC--CceEEE-EEEEEEcC- Confidence 8999999999999999999999866544 488899999998754222222 234333 33332221 Q ss_pred CCcccceeeEEEEEeecCCceEEEEEEeeeccCCc--cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHH Q lcl|Aclame:pro 217 DGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEM--YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLC 294 (535) Q Consensus 217 d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA 294 (535) ...+.+++.+. +..|+.+..+.. ..............|+++.||||.+.+.. .+.+.|.++. T Consensus 186 -------~~~~~~y~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~----~g~sd~e~v~ 249 (474) T protein:vir:95 186 -------EEKVEFWTDTT-----VTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKNNP----EEVSDIWMYK 249 (474) T ss_pred -------eeEEEEEeCCe-----EEEEEEcCCccccccccCcccccccccccCCCccceEeecCCC----CCCCcHHHHH Confidence 12344444431 223433322211 11111223344567899999999875432 3567789999 Q ss_pred HHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHH Q lcl|Aclame:pro 295 EVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKE 373 (535) Q Consensus 295 ~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e 373 (535) .|..+.....|++...+.+.++|+++++|++.+...+... .+....++.++++++++|+..+.+.-. ...++.+. T Consensus 250 ~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (474) T protein:vir:95 250 SLIDAIDKRLSDAQNMFDESVELIYILKGYEGQDLEEFMR----GLKYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMR 325 (474) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhh----hhhccceeeccCCCceeEEeecCCHHHHHHHHHHHH Confidence 9999999999999999999999999999988664333211 233456777889999999987654333 35678888 Q ss_pred HHHHHHhhhh--hcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCcc Q lcl|Aclame:pro 374 SQMIAMGANL--LVK-SGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAAR 450 (535) Q Consensus 374 ~qm~~lga~~--l~~-~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~ 450 (535) ++|...+..+ ... .+++.|+.+..............+...++.+|.+++++++.+.|...+.. .+++.+++.... T Consensus 326 ~~i~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~--~i~v~f~~~~p~ 403 (474) T protein:vir:95 326 AYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLKMDVK--DIEISFNFNRMM 403 (474) T ss_pred HHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc--eeeEEeccCCCc Confidence 8887665433 112 23455555555666667777888888999999999999999998655443 455556666666 Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCC Q lcl|Aclame:pro 451 LTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGG 530 (535) Q Consensus 451 ~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (535) .+.+.++++. ++|.||++|++..| +...+.++|.+||..|-...........+. +.+..+.+..++-. T Consensus 404 d~~e~a~~~~---~~g~iS~et~i~~l------~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~---~~d~~~~~~~~~~~ 471 (474) T protein:vir:95 404 NDAEQSQIIA---QSQYLSRETLVKSS------PLVDDYKAELERIEQEQMEYNKQLPNLDDG---GADGAQQQERSNDK 471 (474) T ss_pred CHHHHHHHHH---hcCCCchHHHHHhC------CCCCCHHHHHHHHHHHHHHHHhcccccccc---cCCCCcCCCCCccC Confidence 5666776654 56999999988543 223346677778776643221111111110 00000000000000 Q ss_pred CCC Q lcl|Aclame:pro 531 NQA 533 (535) Q Consensus 531 ~~~ 533 (535) .+= T Consensus 472 ~~~ 474 (474) T protein:vir:95 472 ESE 474 (474) T ss_pred CCC Confidence 000 No 26 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=100.00 E-value=2.6e-31 Score=188.24 Aligned_cols=439 Identities=10% Similarity=0.032 Sum_probs=259.2 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |.-+ ----..+|+-.+.+..+ +..---.+....++|+.+.+.|.|...+..+ |... .. T Consensus 1 ~~~~-------~~~~~~~p~d~~~~~~~------l~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~-----~~~~---~~- 58 (453) T protein:vir:39 1 MKYK-------PPKLMTFPKDEPITNEV------VTKFMEKHRLEVARYEYLKNMYRGIMAIDAE-----PTKD---LW- 58 (453) T ss_pred Ceec-------CCcceEcCCCCCCCHHH------HHHHHHHHHHHHHHHHHHHHHhhccCchhcC-----CCcc---cc- Confidence 1100 00011233333322221 1111112455678899999999997655321 2111 00 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-----HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEE Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-----ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAA 155 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-----~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~ 155 (535) .. . .|.+ .|+.+.+|+.++|++|.++++++..+ .+..++.+ |+++..+..+++.++.+|++| T Consensus 59 --~~--~---~ki~-~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~i~~~-----N~~~~~~~~~~~~~~~~G~~~ 125 (453) T protein:vir:39 59 --KP--D---NRLT-VNFTKYIVDTFTGYFNGIPVKKSHSDKETLSKLQEFDNL-----NDMEDEESELAKMACIYGRAF 125 (453) T ss_pred --Cc--c---ceee-cchHHHHHHHHhhhhcccCceeccCChHHHHHHHHHHHh-----cChhHHHHHHHHHHhhcCeEE Confidence 01 1 1223 59999999999999999999986432 34445544 689999999999999999999 Q ss_pred EEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCC Q lcl|Aclame:pro 156 IFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE 235 (535) Q Consensus 156 vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~ 235 (535) ++|..+..+ +|-+..++|.+++-+--+.. ++..+..|++ +. + + ..+..+.+++.+ T Consensus 126 ~~v~~d~~g-------------~~~i~~~~p~~~~~v~d~~~-~~~~~~~ir~--~~-~-~-----~~~~~~~~yt~~-- 180 (453) T protein:vir:39 126 ELLYQNEET-------------QTNVIYNTPENMFMVYDDTI-KQEPLFAVRY--GY-D-D-----DYKLYGEVYTKE-- 180 (453) T ss_pred EEEEecCCC-------------ceEEEEEcccceEEEecCCC-CCeEEEEEEE--EE-e-C-----CeEEEEEEEeCC-- Confidence 999765443 48899999999876543222 2333222322 21 1 1 122334444442 Q ss_pred ceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhc Q lcl|Aclame:pro 236 GNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAG 315 (535) Q Consensus 236 g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~ 315 (535) ..| .|.... ..+...+...|++|.||||.+.... .+.+.|.++..|..++.+..|++...+.+.+ T Consensus 181 ~i~---~~~~~~--------~~~~~~~~~~~~~g~vPvv~~~n~~----~g~sd~e~v~~liDa~~~~~s~~~~~~~~~~ 245 (453) T protein:vir:39 181 TTY---ALNGTM--------GFYNMTEQAPNPFDDLPVVEFYFNE----ERMSIFESVISLVNAFNKAISEKANDVDYFS 245 (453) T ss_pred eEE---EEEecC--------CceeeecccccCCCceeEEEecCCC----CCCcchhhhHHHHHHHHHHHHHHHHHHHHhh Confidence 222 233221 1223344567999999999885432 3567789999999999999999999999999 Q ss_pred CceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh--hcccccccc Q lcl|Aclame:pro 316 QPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANL--LVKSGGNRT 392 (535) Q Consensus 316 ~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l~~~~~~~t 392 (535) +|+++++|...+............+........+++++++|++.....-. ...++.+.++|..++.-+ -....++.| T Consensus 246 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~S 325 (453) T protein:vir:39 246 DQYLTFLGAAVEEEDLKNIRSNRVINYYGESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESFGSSS 325 (453) T ss_pred CceeeeecCCCCchhhhhhhhcceeeecCCCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccCCh Confidence 99999999654432221111111111111122345678889987654333 356778888777665322 223345666 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHH Q lcl|Aclame:pro 393 FGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND-ETVEYNLNTDFPAARLTPNERAELILEWQQGAITFK 471 (535) Q Consensus 393 a~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~-~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~e 471 (535) +.+..............+...++.++++++++++.+.+..... ....+++.+........++.++++.++ +|.||++ T Consensus 326 g~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~e 403 (453) T protein:vir:39 326 GVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVSNKEAWKDIEYTFTRNEPKDIKEQAETANIL--MGITSQE 403 (453) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChH Confidence 6655666667777788888899999999999999987643221 112334444444445567788888887 6899999 Q ss_pred HHHHHHHhCCCCCccCCHHHHHHHHHhchhhcc-----cCCCcCCCCCCCcccccc Q lcl|Aclame:pro 472 EMRAGLRRAGVASEDDAKAETEGKATVEFIAKT-----AAAGKVGDAASGGTNKAK 522 (535) Q Consensus 472 t~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~-----~~~~~~~~~~~~~~~~~~ 522 (535) |+++.| +.+ .+.++|.+||.+|-...- ...+..++...++.+++. T Consensus 404 t~l~~l---~~v---~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e 453 (453) T protein:vir:39 404 TALSVI---SVI---PDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPETNEE 453 (453) T ss_pred HHHHhC---CCC---CCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcCCC Confidence 998654 333 345677777766532210 111111111111111111 No 27 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=100.00 E-value=2.7e-31 Score=188.21 Aligned_cols=469 Identities=10% Similarity=0.048 Sum_probs=271.5 Q ss_pred CCcchhhhhhhhhc----ceecCCCCCCCCcccccCC--C---------CCccCHHHHHHHHHHHHHHHHhcChHHHHHH Q lcl|Aclame:pro 1 MARKRTTIRRDVQS----KVLIPPQAPPTSGLGPSLP--N---------VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAK 65 (535) Q Consensus 1 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~M~--~---------v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~ 65 (535) |.- -.-|..-.|. .-+|-|-.|-+...=-.|. + |.+--..+....+++.++.+.|.|...+..+ T Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~ 79 (492) T protein:vir:97 1 MQF-IQLISQVAQALIKGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKE 79 (492) T ss_pred ChH-HHHHHHHHHHHhcCCceeeccchhhhhHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccc Confidence 110 0011111111 1112222222222211111 1 1111123455677888888888886554322 Q ss_pred HhhhCCCCCCCCCChhhHHHHHHHH-hhhccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHH Q lcl|Aclame:pro 66 REEYLPMPSVDSRDEEQRRRYETYL-QRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKK 143 (535) Q Consensus 66 g~~YLP~~~~~~~~~E~~~~Y~~rl-~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~ 143 (535) ...+.... ..+..+- .|. -.|+.+.+|+..+|++|.++++++..+. ...+++++- .++++..... T Consensus 80 ~~~~~~~~----------~~~~~~~~~ri-~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~l~~~~--~n~~~~~~~~ 146 (492) T protein:vir:97 80 PKPVDATG----------AVDPLKPDDRM-ITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL--GNRFDDKLHS 146 (492) T ss_pred cccccccc----------ccccccccccc-ccchHHHHHHHHhhhhcccCceeccCchHHHHHHHHHH--hccHHHHHHH Confidence 11111110 0011110 122 2699999999999999999999975432 334444442 2678999999 Q ss_pred HHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccce Q lcl|Aclame:pro 144 ALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTY 223 (535) Q Consensus 144 ~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~ 223 (535) +++.++.+|+||++|..+..+ +|-+..++|++++-.--+... +.+..+ +|....+ +. T Consensus 147 ~~~~~~~~G~a~~~v~~d~dg-------------~~~~~~~~p~~~~~i~d~~~~--~~~~~~-vr~~~~~-~~------ 203 (492) T protein:vir:97 147 VLTGASNKGIEWLHPYLDEEG-------------EFKLFRVPAEQGIPIWTDKEH--EELEAF-IRMYKLE-NE------ 203 (492) T ss_pred HHHHHhhcCeEEEEEEecCCC-------------ceEEEEEcccceEEEEcCCCC--CceEEE-EEEEeec-cc------ Confidence 999999999999999765544 378999999998653222121 234333 3322222 11 Q ss_pred eeEEEEEeecCCceEEEEEEeeeccCCc--cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 224 VQQWRVLQLNAEGNYQVERWRRETQEEM--YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 224 ~~~~rvl~l~~~g~y~v~~w~~~~~~~~--~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) ..+.+++.+. +..|..+..... ......+..+....|+|+.||||.+.... .+.+.+.++..|..++. T Consensus 204 -~~~~~y~~~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~~liDa~d 273 (492) T protein:vir:97 204 -TKVEYWDKVT-----VNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYN 273 (492) T ss_pred -eeEEEEecCe-----EEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCC----CCCCchHhHHHHHHHHH Confidence 2233444321 122222211110 00111122345567999999999885432 35677889999999999 Q ss_pred hhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchh-HHHHHHHHHHHHHHHh Q lcl|Aclame:pro 302 RNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSV-PFEAMTHKESQMIAMG 380 (535) Q Consensus 302 ~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l-~~~~l~~~e~qm~~lg 380 (535) +..|++...+.+.++|+++++|++.+...+.. -.++...++.++++++++|+......- ....++.+.+.|..++ T Consensus 274 ~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~s 349 (492) T protein:vir:97 274 RRLSDLSNTFKDSNELTYVLKNYDDQELPEFK----RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFG 349 (492) T ss_pred HHHHHHHHHHHHhccceeeeecCCcccchhHH----HHHhhccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHHHHh Confidence 99999999999999999999998766543321 124455678889999999998664332 3456788888877766 Q ss_pred hhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHH Q lcl|Aclame:pro 381 ANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERA 457 (535) Q Consensus 381 a~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~ 457 (535) .-.- ..-+++.|+.+..............+...++.++++++++++.+++...+. ..+.+.+.+..+...++.++ T Consensus 350 ~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~--~~i~v~f~~~~p~~~~e~a~ 427 (492) T protein:vir:97 350 QAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEH--KDVDISFNYNKVANTELQVQ 427 (492) T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ceeeEEecCCCCCCHHHHHH Confidence 4332 222345555555556667777888888999999999999999998864433 34555566666666778889 Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 458 ELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 458 al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) ++.++ +|.||++|+++.| +. ..+.++|.+||.+|-........... .++++..+...+++-..+. T Consensus 428 ~~~kl--~G~iS~et~l~~l---~~---v~d~~~Eleri~~E~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e 492 (492) T protein:vir:97 428 TAQQS--MGIVSHETVLENH---PF---VEDLQAELERIEQEQTEYNKQLPNLD---DGGADSAQQQERSNNKESE 492 (492) T ss_pred HHHHH--hccCchHHHHHhC---CC---CCCHHHHHHHHHHHHHHHHHhhhccc---cCCCCCCcccccccccccC Confidence 88887 5899999987643 32 23466777777665432211111111 1111222221111111111 No 28 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=100.00 E-value=1.5e-31 Score=189.62 Aligned_cols=435 Identities=11% Similarity=0.043 Sum_probs=263.8 Q ss_pred ccccCCC--CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPN--VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~--v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) |.+.-|+ +..---.+....++++++++.|.|...++ |+|+-- ...|+....+++ .|+.+.+|+. T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i~-----~~~~~~--------~~~~~~~~~~~~-~n~~~~ivd~ 66 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPLP-----ELTRNT--------SAAWRSFQREAR-TNWGLMVRDS 66 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChh-----hcCccc--------Chhhchhhhhhh-cchHHHHHHH Confidence 2222221 11112245667888999999999966543 444311 123555444445 6999999999 Q ss_pred Hhhhhhcccccccc------CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 106 MMGQVFSRDPIRQL------PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 106 l~G~lF~k~p~~~~------p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) +++++|.++.++.. ...+..++++ |+++.+.+.+++.++.+|+||++|.....|. | T Consensus 67 ~~~~l~~~g~~~~~~~d~~~~~~~~~~~~~-----n~~d~~~~~~~~~a~~~G~a~~~~~~~edg~-------------~ 128 (456) T protein:vir:79 67 VADRIIPNGITVGGSADSDLALRARRIWRD-----NRMDSVCKQWVKYGLDFGESYLTCWRRDDGT-------------A 128 (456) T ss_pred HHhhhccCCeecCCCCCccHHHHHHHHHHh-----cChhHHHHHHHHHHhhcCeeEEEEeeCCCCc-------------e Confidence 99999999887632 2345556654 5799999999999999999999997554443 7 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEE--EeeeccCC--ccccc Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVER--WRRETQEE--MYYSY 255 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~--w~~~~~~~--~~~~~ 255 (535) .+..++|.+++-.- +...++.....+++.. +. ++. ..+.++.. .++.++.++ |....... ..... T Consensus 129 ~i~~~~p~~~~~i~-d~~~~~~~~~~~~~~~---~~-d~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (456) T protein:vir:79 129 TITADSPETMVVSV-DPLQPWRIRSAMRWWR---DL-DAE-----SDFAIVWS-GDGWQKFARPCFVQSSSRRRLVTRIS 197 (456) T ss_pred EEEEeccceeEEEE-cCCCCCceEEEEEEEE---ec-CCc-----eeEEEEEc-CCceEEEEEEEEeeccccceeeeccC Confidence 88999999886442 3333334433333322 11 211 11112222 123332222 11111111 11122 Q ss_pred cceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchh---c Q lcl|Aclame:pro 256 SKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVED---V 332 (535) Q Consensus 256 ~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d---~ 332 (535) ..+++.....|.+++|||+++.+. .+.+.+.++..|..++.+..|+....+++.++|+++++|...+.... + T Consensus 198 ~~~~~~~~~~~~~~~~pvv~~~N~-----~~~gd~e~v~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g 272 (456) T protein:vir:79 198 DSWVPVGDAVVTGSPPPVVVYQNP-----DGMGEVEPHIDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENG 272 (456) T ss_pred CceeecccccCCCCceeEEEecCC-----CCCchhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccc Confidence 234444556789999999998532 23456778888899999999999999999999999999975432111 1 Q ss_pred ---cCcceeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhh---hhcccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 333 ---FKDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGAN---LLVKSGGNRTFGEAQQEEASEQSI 406 (535) Q Consensus 333 ---~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~---~l~~~~~~~ta~~a~~~~~~~~S~ 406 (535) ...+.+..+.+.+|.+|++++++.++........+.++.+..++.....- .+...++|.|+.+.+......... T Consensus 273 ~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~l~~~i~~i~~~t~~p~~~~~~~~~N~Sg~Al~~~~~~l~~k 352 (456) T protein:vir:79 273 NAIDYASIFEAAPGALWELPPGVDIWESQTNDFTPMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFK 352 (456) T ss_pred cccchhhhhhhhccccccCCCCcceeeecccChHHHHHHHHHHHHHHHhhcCCChhHhcccccCcHHHHHHHHHHHHHHH Confidence 11123455677888889888876544332222346677777777654332 223344566666556666777777 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 407 LSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASED 486 (535) Q Consensus 407 L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~ 486 (535) ...+...+..+|+++++++..+.|.. +... +++.|........++.++++++++++|.+|++++++. .|+.++ T Consensus 353 ~~~~~~~f~~~l~~~~~l~~~~~g~~-~~~~--i~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~---lg~~~~- 425 (456) T protein:vir:79 353 CEDRLSIAKIGLEAILVKALQIEGES-VEDT--VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNI---LNYNAD- 425 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC-cccc--ceEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHhc---CCCCHH- Confidence 88888899999999999999988742 2223 4444433334446889999999999999999987654 355332 Q ss_pred CCHHHHHHHHHhchhhcccCCCcCCCCCCCc Q lcl|Aclame:pro 487 DAKAETEGKATVEFIAKTAAAGKVGDAASGG 517 (535) Q Consensus 487 ~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~ 517 (535) +..+++.+|+..|........-..+++.++- T Consensus 426 ~i~~~e~~r~~~e~~~~~~~~~~~~~~~~~~ 456 (456) T protein:vir:79 426 QIKQDDLDRAREQITLFAGNPVQRPQEDGSR 456 (456) T ss_pred HHHHHHHHHHHHHHHHHhhhHhhcCCCCCCC Confidence 2234455566665433211111111211111 No 29 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=100.00 E-value=2.7e-31 Score=188.18 Aligned_cols=458 Identities=14% Similarity=0.075 Sum_probs=265.6 Q ss_pred CCCCCCCccc-ccCCC--CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccc Q lcl|Aclame:pro 20 PQAPPTSGLG-PSLPN--VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFY 96 (535) Q Consensus 20 ~~~~~~~~~~-~~M~~--v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~ 96 (535) -|+ |-.|+- ..|+. ++.--..|....++++++.+.|.|...++ |+|+.-. ..++.. +++ . T Consensus 1 ~~~-~i~~~~~~~~~~~~~~~L~~~~~~~~~r~~~~~~YY~G~~~i~-----~~~~~~~--------~~~~~~--~~~-~ 63 (485) T protein:vir:24 1 MTA-PLPGQEEIADPAIARDEMVSAFEDQNQNLRSNTSYYEAERRPE-----AIGVTVP--------VQMQSL--LAH-V 63 (485) T ss_pred CCC-CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-----hcCcccc--------hhhhhh--hhc-c Confidence 111 223331 12221 12223456777889999999999977553 4544211 113322 333 6 Q ss_pred hhHHHHHHHHhhhhhcccccccc----CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHH Q lcl|Aclame:pro 97 NVTARTLDGMMGQVFSRDPIRQL----PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQ 172 (535) Q Consensus 97 n~~~~tv~~l~G~lF~k~p~~~~----p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~ 172 (535) |+.+.+|+.++++++....++.- ...+..+++. |+++.+.+.+++.++.+|++|++|.....+... T Consensus 64 n~~~~ivd~~~~~l~~~g~~~~~~~~~~~~l~~i~~~-----N~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~----- 133 (485) T protein:vir:24 64 GYPRLYVDSIAERQAVEGFRLGDADEADEELWQWWQA-----NNLDIEAPLGYTDAYVHGRSYITISRPDPQIDL----- 133 (485) T ss_pred chHHHHHHHHhhhhccCceecCCCchhHHHHHHHHHh-----cChhHHHHHHHHHHhhcCceEEEEecCCccccc----- Confidence 99999999999999877666532 2346666653 689999999999999999999999765432210 Q ss_pred HhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcc Q lcl|Aclame:pro 173 KLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMY 252 (535) Q Consensus 173 ~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~ 252 (535) .-...+|-++.++|++++-.- +..-+ .++..+.+.. +++ ...+..+.+++.+ ..|+ |.... T Consensus 134 ~~~~~~~~i~~~~p~~~~~i~-D~~~~--~~~~~~~~~~--~~~----~~~~~~~~~y~~~--~~~~---~~~~~----- 194 (485) T protein:vir:24 134 GWDPNVPLIRVEPPTRMYAEI-DPRIG--RPAKAIRVAY--DAE----GNEIQAATLYTPN--ETFG---WFRAE----- 194 (485) T ss_pred ccCCCcceEEEeccceeEEEe-eCCcC--ceeEEEEEEE--eec----CCeEEEEEEEcCC--cEEE---EEecC----- Confidence 001234889999999986442 22222 3333322221 111 1344555666543 2222 22211 Q ss_pred ccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch Q lcl|Aclame:pro 253 YSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE 330 (535) Q Consensus 253 ~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~ 330 (535) +.++......|+++.||||.| +........|.+.|. +|..|..+..+..|++..++.+.++|+++++|.+.+... T Consensus 195 ---~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~~ 271 (485) T protein:vir:24 195 ---GEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIG 271 (485) T ss_pred ---CceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchhhhhccCCccccc Confidence 124444556799999999966 444445556788886 688999999999999999999999999999998654321 Q ss_pred --hccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHh---hhhhcccccccchHH-HHHHHHH Q lcl|Aclame:pro 331 --DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMG---ANLLVKSGGNRTFGE-AQQEEAS 402 (535) Q Consensus 331 --d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lg---a~~l~~~~~~~ta~~-a~~~~~~ 402 (535) +......+..+...+|.++ ++++++.|+..+++. .+.++.+..++.... ...+..++.+.+++. ....... T Consensus 272 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~ 350 (485) T protein:vir:24 272 VDPETGQTLFDAYLARILAFE-DAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESR 350 (485) T ss_pred cccccccchhhhcccceeccC-CCCceEEeecccchHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHHHHHHHHHHH Confidence 2222333555666777766 345667787776654 345555555554332 222333333434444 3555666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CceeEEEEecccCCccCCHHHHHHHHHHHhcC--CCCHHHHHHHHHh Q lcl|Aclame:pro 403 EQSILSACTKNVSMAFRKALRWANQFQTGIVN-DETVEYNLNTDFPAARLTPNERAELILEWQQG--AITFKEMRAGLRR 479 (535) Q Consensus 403 ~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~-~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G--~is~et~~~~L~r 479 (535) .......+...+..+|+++++++..+.+.... .....+++.+........++.++++.+++++| .+|++|+++. T Consensus 351 l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~--- 427 (485) T protein:vir:24 351 LIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKD--- 427 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhh--- Confidence 67777788888889999999999998764321 12223444433233445688999999999976 7999998754 Q ss_pred CCCCCccCCHHHHHHHHHhchh-------hcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 480 AGVASEDDAKAETEGKATVEFI-------AKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 480 ~gvl~~~~~~eee~~~i~~e~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) .++.+ +..+++.++..+-. +.........++....++......+..|+..| T Consensus 428 l~~~~---d~~~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~a 485 (485) T protein:vir:24 428 MGYSI---AEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPNPTPAPKPQPAIEGGDSA 485 (485) T ss_pred CCCCH---hHHHHHHHHHHHHhhhhhhHHHhhcccCCCCCCCCCCCCCCCCccCCCCCCCC Confidence 35432 22222333222211 11101111111111122222222333333333 No 30 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=100.00 E-value=2.6e-31 Score=188.27 Aligned_cols=453 Identities=11% Similarity=0.051 Sum_probs=258.6 Q ss_pred cCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccch Q lcl|Aclame:pro 18 IPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYN 97 (535) Q Consensus 18 ~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n 97 (535) |++.- .|-+.. =+++--..+....++++++.+.|.|...++ |+|... ...++.+ +. ..| T Consensus 1 ~~~~~----~~d~~~-~i~~L~~~~~~~~~r~~~~~~Yy~g~~~i~-----~~~~~~--------~~~~~~~--~~-~~n 59 (488) T protein:vir:23 1 MAETE----SIDPEK-LRDQLLDAFENKQNELKSSKAYYDAERRPD-----AIGLAV--------PLDMRKY--LA-HVG 59 (488) T ss_pred CCccc----CCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccchh-----hcCccc--------chhhhhh--hh-hcc Confidence 11110 000000 023334567778899999999999976554 333211 1123333 22 369 Q ss_pred hHHHHHHHHhhhhhccccccc--------------cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCC Q lcl|Aclame:pro 98 VTARTLDGMMGQVFSRDPIRQ--------------LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNV 163 (535) Q Consensus 98 ~~~~tv~~l~G~lF~k~p~~~--------------~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~ 163 (535) +.+.+|++++.+++-...++- ....+..+++. |+++...+.+++.++.+|+||++|..... T Consensus 60 ~~~~ivd~~a~~l~~~Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~~-----N~~~~~~~~~~~~a~i~G~a~~~v~~~~~ 134 (488) T protein:vir:23 60 YPRTYVDAIAERQELEGFRIPSANGEEPESGGENDPASELWDWWQA-----NNLDIEATLGHTDALIYGTAYITISMPDP 134 (488) T ss_pred hHHHHHHHHHHhhhccceeccCCcccccccccchhHHHHHHHHHHh-----cChhHHHHHHHHHHhhcCceEEEEecCCc Confidence 999999999988853322211 11234444433 68999999999999999999999975421 Q ss_pred CcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEE Q lcl|Aclame:pro 164 GRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERW 243 (535) Q Consensus 164 ~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w 243 (535) ... ..+ ....|.+..++|.+++-+--+.. + ..+.-+++ .. ..++ ..+..+.+++.+ ..|+ | T Consensus 135 ~~~--~~~---~~~~~~i~~~~p~~~~~~~d~~~-~-~~~~~~~~--~~-~~~~----~~~~~~~~y~~~--~~~~---~ 195 (488) T protein:vir:23 135 EVD--FDV---DPEVPLIRVEPPTALYAEVDPRT-R-KVLYAIRA--IY-GADG----NEIVSATLYLPD--TTMT---W 195 (488) T ss_pred ccc--cCC---CCCcceEEEeccceeEEEEecCC-C-ceEEEEEE--EE-ecCC----CcEEEEEEEecC--cEEE---E Confidence 110 000 11237889999999877643332 2 23332222 22 1111 233445555543 3332 2 Q ss_pred eeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEe Q lcl|Aclame:pro 244 RRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFF 321 (535) Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~ 321 (535) .... +.+...+...|+++.||||+| +..+.....+.+.|. +|..|..++.+..|++..++++.++|++++ T Consensus 196 ~~~~--------~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i 267 (488) T protein:vir:23 196 LRAE--------GEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLI 267 (488) T ss_pred EecC--------CceEeccccccCCCCcceEEeccccccCCcCCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH Confidence 2211 123334455699999999976 444455556778786 578899999999999999999999999999 Q ss_pred eCCCCccch--hccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchH Q lcl|Aclame:pro 322 TGLTKDWVE--DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFG 394 (535) Q Consensus 322 ~G~~~~~~~--d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~ 394 (535) +|++.+... +......+..+...+|.++++.++++.|+.+.++. .+.++.+..++..... ..+..++.+.+++ T Consensus 268 ~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~q~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~n~~Sg 347 (488) T protein:vir:23 268 FGAKPEELGINAETGQRMFDAYMARILAFEGGEGAHAEQFSAAELRNFVDALDALDRKAASYSGLPPQYLSSSSDNPASA 347 (488) T ss_pred hCCCcccccccccccchhhhhhhhhhccCCCCCCceeEecCCCChHHHHHHHHHHHHHHhcccCCCHHHhccccCcchHH Confidence 998654332 22223345667788899998888999998887764 3556666666654332 2222233333333 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eeEEEEecccCCccCCHHHHHHHHHHHhcC--CCCH Q lcl|Aclame:pro 395 -EAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDE-TVEYNLNTDFPAARLTPNERAELILEWQQG--AITF 470 (535) Q Consensus 395 -~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~-~~~v~~n~df~~~~~d~~~~~al~~l~~~G--~is~ 470 (535) +..............+...+..+|.+++++++.+.+...... ...+.+.+........++.++++.+++++| .+|+ T Consensus 348 ~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~ 427 (488) T protein:vir:23 348 EAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKMVKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPR 427 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCH Confidence 334555666667777777888899999999999987532111 123343333333445688999999999976 7999 Q ss_pred HHHHHHHHhCCCCCccCCHHHHHHHHH-h---chhhc----ccCCCcCCCCCCCcccccccccccCC Q lcl|Aclame:pro 471 KEMRAGLRRAGVASEDDAKAETEGKAT-V---EFIAK----TAAAGKVGDAASGGTNKAKLNNGNGG 529 (535) Q Consensus 471 et~~~~L~r~gvl~~~~~~eee~~~i~-~---e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (535) +|+++.| ++.++. .++ +.++. + +...+ .......+..+...+.+.+..-.+-+ T Consensus 428 et~~~~l---~~~~d~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~a 488 (488) T protein:vir:23 428 ERGWVDM---GYTIVE--REQ-MRQWLEQDQKQGLGLIGSLYGASTPEGKPGEAPVGEPPAPEPDAA 488 (488) T ss_pred HHHHHhC---CCCchH--HHH-HHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCCCCC Confidence 9998765 443221 222 11111 1 11111 00000000000000000110000000 No 31 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=100.00 E-value=7.1e-31 Score=185.86 Aligned_cols=441 Identities=11% Similarity=0.006 Sum_probs=260.8 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHH--------H-HHHHHHHHHHHHHhcChHHHHHHHhhhCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVE--------F-GEMLPKWRKIMDCLSGQEAIKAKREEYLP 71 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~--------y-~~~~~~w~~i~d~~~G~~~~~~~g~~YLP 71 (535) |+ -|---..-+.+--.|-||.-...-++ + ....++|+++.+.|.|...+... | T Consensus 1 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~~~i~~~-----~ 62 (470) T protein:vir:99 1 MK-------------DINYGRDKVTGNSSFIFPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGKHKILTA-----P 62 (470) T ss_pred Cc-------------cccCCcccccCCceEEeCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccC-----c Confidence 21 11112222333334444421111111 1 23457899999999997654221 1 Q ss_pred CCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH------HHHHHHhccCCCCCCHHHHHHHHH Q lcl|Aclame:pro 72 MPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP------ALEAIVEDIDGEGVSLDQQAKKAL 145 (535) Q Consensus 72 ~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~------~l~~l~~d~d~~G~~L~~~~~~~~ 145 (535) +. +.+..+ | .-.|+.+.+|+.++|++|.++++++.++ .+..+++ .++++...+.++ T Consensus 63 ~~-------~~~~~~-----k-i~~n~~~~Ivd~~~~~l~g~p~~~~~~~d~~~~~~l~~~~~-----~n~~~~~~~~~~ 124 (470) T protein:vir:99 63 EK-------ETGADN-----R-IVVNSAKYVVDVYNGYFCGIEPKLALLNDSSKIDEIARWNR-----QENFFDTINEIS 124 (470) T ss_pred cc-------ccCCcc-----e-eecchHHHHHHHHhhhhccCCeeEeeCCchhHHHHHHHHHH-----hcCHhHHHHHHH Confidence 10 011111 2 2369999999999999999999986543 2333333 368999999999 Q ss_pred HHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 146 GYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 146 ~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) +.++.+|++|++|..+..+ +|.+..++|.+++-.- +....+..+.. +|.... .++ .+... T Consensus 125 ~~~~~~G~~~~~v~~d~dg-------------~~~i~~~~p~~~~~i~-d~~~~~~~~~~--vr~~~~-~~~---~~~~~ 184 (470) T protein:vir:99 125 KQCDIFGRSIASIYQGEDA-------------RPHLMYSSPNHAFIIY-DDTVQRQPLAF--VHYQID-NSN---NWTDA 184 (470) T ss_pred HHHHhcCeeEEEEEeCCCC-------------eEEEEEEccceeEEEE-cCCCCcceEEE--EEEEEE-ecC---CeeEE Confidence 9999999999999654433 4899999999986432 22222233332 333322 222 22333 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+.+++. +..|++ +....+. .....+...|+++.||||.+.+.. .+.+.+.++..|..++.+..| T Consensus 185 ~~~~~~~--~~~~~~---~~~~~~~------~~~~~~~~~~~~g~vPvv~~~n~~----~g~sd~e~v~~liDa~~~~~s 249 (470) T protein:vir:99 185 YGVIQYA--DKFYKF---KGYDIEE------DTNAAGYAINPYGLVPAVEFFENE----ERQGIFDSIKTLINALDKVIS 249 (470) T ss_pred EEEEEec--CeEEEE---Eeccccc------ccccccccccCCCccceEeecCCC----CCCcchHhHHHHHHHHHHHHH Confidence 3444443 223322 2211111 112234566999999999875432 456788899999999999999 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCC-----CCCccceeecCcchhH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP-----QGATAGILQITPNSVP-FEAMTHKESQMIAM 379 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp-----~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l 379 (535) ++..++.+.++|+++++|...+.++++.. ...+....++.+| ++++++|+......-. ...++.+.+.|..+ T Consensus 250 ~~~~~~~~~~~~~~~i~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~ 327 (470) T protein:vir:99 250 QKANQVEYFDNAYMYMIGFKLPEDDEGNP--KFDFKNNRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHLTDFIFMM 327 (470) T ss_pred HHHHHHHHhcCceeeeecCCcccccccch--hhhhhhcceeeecCCCCCCCCcceEEeecCChHHHHHHHHHHHHHHHHH Confidence 99999999999999999986554332211 1233445555554 3567888876654333 35678888888776 Q ss_pred hhhhh--ccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--ceeEEEEecccCCccCCHH Q lcl|Aclame:pro 380 GANLL--VKS-GGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND--ETVEYNLNTDFPAARLTPN 454 (535) Q Consensus 380 ga~~l--~~~-~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~--~~~~v~~n~df~~~~~d~~ 454 (535) +.-.- ..+ +++.|+.+..............+...++.+|.+++++++.+++..... ....+++.+........++ T Consensus 328 s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~i~v~f~~~~p~~~~e 407 (470) T protein:vir:99 328 AMVPNIQDKNFAGNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQELWSELDFKFTRNLPEDMAS 407 (470) T ss_pred hCCccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccceEEeCCCCCcCHHH Confidence 64431 122 345555555566667777788888899999999999999887643222 1223444444444444678 Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhc---ccCCCcCCCCCCCccccccc Q lcl|Aclame:pro 455 ERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAK---TAAAGKVGDAASGGTNKAKL 523 (535) Q Consensus 455 ~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~---~~~~~~~~~~~~~~~~~~~~ 523 (535) .++++.++. |.||++|+++.| +.+ +.++|.+||.+|.... ......+.+.+.+..++..+ T Consensus 408 ~a~~~~kl~--giis~et~l~~l---~~v----d~~~E~eri~~E~~~~~~~~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 408 AIDNAKNAE--GIVSKKTQLGMI---PDI----EPDAEMKQIAKEKADAIKQTQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred HHHHHHHHh--ccCCHHHHHHhC---CCC----CHHHHHHHHHHHHHHHHHHHHhhcCCCCcCCCCCCccCC Confidence 888888875 899999988754 222 3556667776653221 11111111111111111111 No 32 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=100.00 E-value=1.7e-30 Score=183.81 Aligned_cols=434 Identities=9% Similarity=0.002 Sum_probs=260.5 Q ss_pred CCCCCccC-----H----------------------HHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHH Q lcl|Aclame:pro 32 LPNVGYQR-----V----------------------EFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRR 84 (535) Q Consensus 32 M~~v~~~h-----p----------------------~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~ 84 (535) |.+|+++- - .+....++.+++.+.|.|...+..+..++..+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~~~~~~~---------- 70 (474) T protein:vir:96 1 MIVIFWPNEKPYHERVVEQIKPKYETQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPKLDNKGE---------- 70 (474) T ss_pred CeeeccCCCchhhhhHHHHhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccchhccccc---------- Confidence 55554321 1 1223445566666666665544332222211100 Q ss_pred HHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCC Q lcl|Aclame:pro 85 RYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNV 163 (535) Q Consensus 85 ~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~ 163 (535) .+..+-..=.-.|+.+.+++..+|++|.++++++.++. ....++.+- .++++.....+++.++.+|++|++|..+.. T Consensus 71 ~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~~~~~~y~d~~ 148 (474) T protein:vir:96 71 IDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTFSSDDDKSLKTIQEVL--NHKWDDKLVDILTAASNKGIEWLQPYIDEN 148 (474) T ss_pred ccccccchhcccchHHHHHHhhhhhhcccCceeecCchHHHHHHHHHH--hcCHHHHHHHHHHHHHhcCeeEEEEEecCC Confidence 01111111123699999999999999999999976532 222233321 146777888899999999999999986654 Q ss_pred CcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEE Q lcl|Aclame:pro 164 GRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERW 243 (535) Q Consensus 164 ~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w 243 (535) + +|.+..++|.+++-.--+... ..+..+ ++.+..+. .+.+.+++.+. +..| T Consensus 149 ~-------------~~~i~~~~p~~~~~v~d~~~~--~~~~~~-vr~~~~~~--------~~~~~~yt~~~-----v~~~ 199 (474) T protein:vir:96 149 G-------------EFKTFRVPAEQAIPIWTNKER--DTLKAF-IRYYRLDG--------AERVEYWTDSD-----VTYY 199 (474) T ss_pred C-------------ceEEEEEcccceEEEEcCCCC--CceEEE-EEEEeecC--------ceEEEEEeCCe-----EEEE Confidence 4 488999999998755322222 223322 22222211 12233333221 1122 Q ss_pred eeeccCCc------cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCc Q lcl|Aclame:pro 244 RRETQEEM------YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQP 317 (535) Q Consensus 244 ~~~~~~~~------~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P 317 (535) ........ ..............|+++.||||.+.+.. .+.+.|.++..|..+.....|++...+...+.| T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~----~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~ 275 (474) T protein:vir:96 200 EYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKNNP----QEMSDLFMYKTIIDAMDKRLSDTQNTFDESTEL 275 (474) T ss_pred EecCCceeeccccccccccccccccccccCCCceeEEEeccCC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccc Confidence 21111100 00111122234456999999999885432 357778999999999999999999999999999 Q ss_pred eeEeeCCCCccchhccCcceeeecCcccccCC-CCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh--hccc-ccccc Q lcl|Aclame:pro 318 TAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP-QGATAGILQITPNSVP-FEAMTHKESQMIAMGANL--LVKS-GGNRT 392 (535) Q Consensus 318 ~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp-~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l~~~-~~~~t 392 (535) +++++|.+.+...+. ...+....++.++ ++++++|+......-. ...++.+.++|...+.-+ ...+ +++.| T Consensus 276 ~lv~~g~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~S 351 (474) T protein:vir:96 276 IYILKGYEGQDLDEF----MRNLKYYKAINVDGDGSGVDTIQIEVPVQSSKEYLDMLRDYVIEFGQGVDFQQDKFGNSPS 351 (474) T ss_pred eeeeecCCcccccch----hhhhhcCceEEecCCCCceeEEeecCChHHHHHHHHHHHHHHHHHhCCccccccccccccH Confidence 999999876543222 1223445667676 4678999987754333 466788888877765432 1122 34555 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHH Q lcl|Aclame:pro 393 FGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKE 472 (535) Q Consensus 393 a~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et 472 (535) +.+..............+...+..++.+++++++.+.|...+..++.| .+.+..+..+.+.++. +.++|.||++| T Consensus 352 g~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~~~~~~~~~i~i--~f~~~~p~~~~e~~~~---~~~ag~iS~et 426 (474) T protein:vir:96 352 GIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLNIKVQDVEI--TFNFNVMVNELEQSQI---GVQSQYLSKET 426 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeE--EeccCCCcCHHHHHHH---HHhcCCCchHH Confidence 555555556667777888889999999999999999987655555444 3444444444455544 45689999999 Q ss_pred HHHHHHhCCCCCccCCHHHHHHHHHhchhhcc-cCCCcCCCCCCCccccccccc Q lcl|Aclame:pro 473 MRAGLRRAGVASEDDAKAETEGKATVEFIAKT-AAAGKVGDAASGGTNKAKLNN 525 (535) Q Consensus 473 ~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~ 525 (535) ++..+ +.+ .+.++|.+||..|-.... ......++..++..++.+.|| T Consensus 427 ~~~~~---~~v---~d~~~E~~ri~~E~~e~~~~~~~~~~~~~~~~~d~~~e~~ 474 (474) T protein:vir:96 427 VVTNH---PWV---DDPVAELERIEQDNIDFNKQLPPLEGDANGRAQDNESETN 474 (474) T ss_pred HHHhC---CCC---CCHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCC Confidence 88643 222 346777778866533221 222334455556666666777 No 33 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=100.00 E-value=3e-30 Score=182.43 Aligned_cols=464 Identities=10% Similarity=0.045 Sum_probs=271.1 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCC--CCCc-cCH--------HHHHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLP--NVGY-QRV--------EFGEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~--~v~~-~hp--------~y~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) ||..- | ...-++-|+.|-+.-+=-.+. +.+. ..+ .+....+++.++.+.|.|...+..+...| T Consensus 1 ~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~ 74 (483) T protein:vir:12 1 MAQAL--I----KGGNILYPSQPTQTEIFDAIVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPV 74 (483) T ss_pred Cccch--h----cCCceeecCcchhhhhhhcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc Confidence 44311 1 111222333333322110111 0000 011 23455678888888888875543322222 Q ss_pred CCCCCCCCCChhhHHHHHHHH-hhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYL-QRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGY 147 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl-~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~ 147 (535) .+... .+..+. .| .-.|+.+.+|+..+|++|.++++++..+ ....+++++- .++++.....+++. T Consensus 75 ~~~~~----------~~~~~~~~k-i~~n~~k~Ivd~~~~~l~G~p~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~~~~ 141 (483) T protein:vir:12 75 DATGA----------VDPLKPDDR-MITNFHANLVDQKVSYIVGKPIAFKHTDDEVVKRIDEVL--GNRFDDKLHSVLTG 141 (483) T ss_pred ccccc----------ccccccccc-cccchHHHHHHHHhhhhcccCceeccCChHHHHHHHHHH--hccHHHHHHHHHHH Confidence 21110 011111 12 2259999999999999999999997543 2333444442 25788899999999 Q ss_pred HHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEE Q lcl|Aclame:pro 148 TMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQW 227 (535) Q Consensus 148 ~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~ 227 (535) ++.+|++|++|..+..+ +|-+..++|.+++-.--+... .+.+..|++ ...+. ...+ T Consensus 142 ~~~~G~~y~~v~~d~d~-------------~~~i~~~~p~~~~~v~d~~~~-~~~~~~ir~--~~~~~--------~~~~ 197 (483) T protein:vir:12 142 ASNKGIEWLHPYLDEEG-------------EFKLFRVPAEQGIPIWTDKEH-EELEAFIRM--YKLEN--------ETKV 197 (483) T ss_pred HhhCCeEEEEEEEcCCC-------------ceEEEEEcccceEEEEcCCCC-CceEEEEEE--EEeec--------ceEE Confidence 99999999999866543 488999999998653212222 222332333 22221 1123 Q ss_pred EEEeecCCceEEEEEEeeeccCC--ccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 228 RVLQLNAEGNYQVERWRRETQEE--MYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 228 rvl~l~~~g~y~v~~w~~~~~~~--~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+++.+. . ..|..+.... ..........+....|+|+.||||.+.... .+.+.+.++..|..+.....| T Consensus 198 ~~y~~~~--v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~~liDa~d~~~S 268 (483) T protein:vir:12 198 EYWDKVT--V---NYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNND----LEISDIFMYKTLIDAYNRRLS 268 (483) T ss_pred EEEecCe--E---EEEEEeCCeeeecccccccccccccccCCCCccceEEecCCC----CCCCchhhHHHHHHHHHHHHH Confidence 3444321 1 1222111110 000111122334567999999999885432 356778899999999999999 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANLL 384 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~l 384 (535) ++...+.+.++|+++++|.+.+...+.. -.+....++.++++++++|+......-. ...++.+.+.|...+.-.- T Consensus 269 ~~~~~~~~~~~~~lv~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 344 (483) T protein:vir:12 269 DLSNTFKDSNELTYVLTNYDDQELPEFK----RLLRYYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIMLFGQAVD 344 (483) T ss_pred HHHHHHHHhcCceeeeecCCcccchhHH----HhhhhccccccCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCCC Confidence 9999999999999999998765433321 1234456777899999999987654333 3567777777766654332 Q ss_pred ---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHH Q lcl|Aclame:pro 385 ---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELIL 461 (535) Q Consensus 385 ---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~ 461 (535) ..-+++.|+.+..............+...++.++++++++++.+++...+.. .+++.+.+..+....+.++++.+ T Consensus 345 ~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~~~~~--~i~v~f~~~~p~~~~~~a~~~~k 422 (483) T protein:vir:12 345 FSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIKGEHK--DVDISFNYNKVANTELQVQTAQQ 422 (483) T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--eeeEEeCCCCCCCHHHHHHHHHH Confidence 2223455555555566667777888888999999999999999998654433 44555555666666788888888 Q ss_pred HHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 462 EWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 462 l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) + +|.||+||++..+ + ..++.++|.+||.+|-......... ...++.+.+++...++-..+- T Consensus 423 l--~GiiS~et~~~~~---~---~v~d~~~E~~ri~~E~~~~~~~~~~---~~~~~~d~~~~~~~~~~~e~e 483 (483) T protein:vir:12 423 S--MGIVSHETVLENH---P---FVEDLQAELERIEQEQMEYNKQLPN---LDDGGADGAQQQERSNNKESE 483 (483) T ss_pred H--hccCchHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHhhccc---ccccccCCcccCCCCCcccCC Confidence 7 5899999987643 2 2334667777777664322111111 111222222222222211111 No 34 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=100.00 E-value=7.5e-31 Score=185.73 Aligned_cols=456 Identities=12% Similarity=0.062 Sum_probs=261.2 Q ss_pred CCCCCCcccccCCC---CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccch Q lcl|Aclame:pro 21 QAPPTSGLGPSLPN---VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYN 97 (535) Q Consensus 21 ~~~~~~~~~~~M~~---v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n 97 (535) -.-|--||.=...+ +..--..|....++++++.+.|.|...++ |+|.. .++ .++. .+++ .| T Consensus 1 ~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~r~~~l~~YY~G~~~i~-----~~~~~----~~~----~~~~--~~~v-~n 64 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVVREEMISAFEDASKDLASNTSYYDAERRPE-----AIGVT----VPR----EMQQ--LLAH-VG 64 (486) T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcch-----hcccc----cch----hHhh--hhhc-cc Confidence 01111222211111 22333456778889999999999987654 33321 111 1222 2333 59 Q ss_pred hHHHHHHHHhhhhhccccccc----cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHH Q lcl|Aclame:pro 98 VTARTLDGMMGQVFSRDPIRQ----LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQK 173 (535) Q Consensus 98 ~~~~tv~~l~G~lF~k~p~~~----~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~ 173 (535) +.+.+|+.++++++-...++. ....+..+++. |+++....++++.++.+|++|++|+....+... . T Consensus 65 ~~~~iVd~~~~~l~~~g~~~~~~~~~~~~~~~i~~~-----N~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~-----~ 134 (486) T protein:vir:42 65 YPRLYVDSVAERQAVEGFRLGDADEADEELWQWWQA-----NNLDIEAPLGYTDAYVHGRSFITISKPDPQLDL-----G 134 (486) T ss_pred hHHHHHHHHHhhhcccceecCCCchhHHHHHHHHHh-----cChhHHHHHHHHHHhhcCceEEEEecCCccccc-----c Confidence 999999999999965443332 12235555543 789999999999999999999999765433210 0 Q ss_pred hccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccc Q lcl|Aclame:pro 174 LGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYY 253 (535) Q Consensus 174 ~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~ 253 (535) ....+|.++.++|++++-+--... + +.+..+++. . +. + .+.++.+.+++.+ .+|+ |+... T Consensus 135 ~~~~~~~i~~~~p~~~~~i~d~~~-~-~~~~~~~~~--~-~~-~---~~~~~~~~~y~~~--~~~~---~~~~~------ 194 (486) T protein:vir:42 135 WDQNVPIIRVEPPTRMHAEIDPRI-N-RVSKAIRVA--Y-DK-E---GNEIQAATLYTPM--ETIG---WFRAD------ 194 (486) T ss_pred cCCCeeEEEEecccceEEEEeCCC-C-CeEEEEEEE--E-ec-C---CCeEEEEEEEcCC--cEEE---EEecC------ Confidence 113358899999999887643332 2 333333332 1 11 1 1334445555542 2222 22211 Q ss_pred cccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch- Q lcl|Aclame:pro 254 SYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE- 330 (535) Q Consensus 254 ~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~- 330 (535) +.+...+...|+++.||||.| +..+.....|.+.|. +|..|..++.+..|++..++++.++|+++++|.+.+... T Consensus 195 --~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~~~~~~~ 272 (486) T protein:vir:42 195 --GEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIKPEEIGV 272 (486) T ss_pred --CcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCCcccccc Confidence 112333345699999999965 444555566788887 588999999999999999999999999999998654322 Q ss_pred -hccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchH-HHHHHHHHH Q lcl|Aclame:pro 331 -DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFG-EAQQEEASE 403 (535) Q Consensus 331 -d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~-~a~~~~~~~ 403 (535) +......+......+|.++ +++++|.|+.+.++. .+.++.+..++..... ..+...+.|.+++ +.+...... T Consensus 273 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~e~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l 351 (486) T protein:vir:42 273 DSETGQTLFDAYLARILAFE-DAEGKIQQFSAAELANFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRL 351 (486) T ss_pred ccccccchhhhhhchhcccC-CCCceEEeecccCHHHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHH Confidence 1222222334455667665 346778888877654 2445555555543322 2223333343444 335555666 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCceeEEEEecccCCccCCHHHHHHHHHHHhc--CCCCHHHHHHHHHhC Q lcl|Aclame:pro 404 QSILSACTKNVSMAFRKALRWANQFQTGIV-NDETVEYNLNTDFPAARLTPNERAELILEWQQ--GAITFKEMRAGLRRA 480 (535) Q Consensus 404 ~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~-~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~--G~is~et~~~~L~r~ 480 (535) ......+...++.+|.++++++..+.+... ..+...+.+.+........++.++++.+++++ |.+|++|+++.| T Consensus 352 ~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~l--- 428 (486) T protein:vir:42 352 IKKVERKNLMFGGAWEEAMRIAYRIMKGGDVPPDMLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDM--- 428 (486) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcC--- Confidence 777778888999999999999999876432 12223455555444455568889999999997 679999997643 Q ss_pred CCCCccCCHHHHHHHHHhch-------hh-cccCCCcCC-CCC-CCcccccccccccCCCCCCC Q lcl|Aclame:pro 481 GVASEDDAKAETEGKATVEF-------IA-KTAAAGKVG-DAA-SGGTNKAKLNNGNGGGNQAG 534 (535) Q Consensus 481 gvl~~~~~~eee~~~i~~e~-------~~-~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 534 (535) |+. .+..+++.++.+|- .+ .....+... .+. ++....++-.+.+||. | T Consensus 429 g~~---~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 486 (486) T protein:vir:42 429 GYS---VKEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPPKPQPAIESSGGD---A 486 (486) T ss_pred CCC---hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCcccCCCCCC---C Confidence 543 23333444432221 11 111111111 011 1111111111222222 2 No 35 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=100.00 E-value=1.1e-30 Score=184.74 Aligned_cols=457 Identities=12% Similarity=0.047 Sum_probs=258.8 Q ss_pred CCCCCCcccccCCCCCccCH-----------HHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHH Q lcl|Aclame:pro 21 QAPPTSGLGPSLPNVGYQRV-----------EFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETY 89 (535) Q Consensus 21 ~~~~~~~~~~~M~~v~~~hp-----------~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~r 89 (535) -.|-+.|...+-..|.-..+ .+....++++++.+.|.|...++ |||.-- + ..|+.. T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~-----~~~~~~----p----~~~~~~ 67 (504) T protein:vir:99 1 MTEETTSASKFTFRIPELNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIR-----QIGNLI----P----PEYLRT 67 (504) T ss_pred CCccCCcccccccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccch-----hccccc----c----HHHHHH Confidence 23334444444443333333 36667788888889999977653 555311 1 124422 Q ss_pred HhhhccchhHHHHHHHHhhhhhccccccc----cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCc Q lcl|Aclame:pro 90 LQRAIFYNVTARTLDGMMGQVFSRDPIRQ----LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGR 165 (535) Q Consensus 90 l~rA~~~n~~~~tv~~l~G~lF~k~p~~~----~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~ 165 (535) +++ .|+.+.+|++++.+++-..-++. ....+..+++. |+|+....++++.++.||+||++|.....+. T Consensus 68 --~~v-~n~~~~iVd~~a~rl~~~Gf~~~d~~~~~~~l~~i~~~-----N~ld~~~~~~~~~a~iyG~af~~v~~~~d~~ 139 (504) T protein:vir:99 68 --ATV-LGWSAKAVDTLARRCNLESFVWPDGDYGSIGGPDVWDE-----NFFATKANNAMVSSLIHGPAFLINTEGGAGE 139 (504) T ss_pred --hhc-cCcHHHHHHHHHhhhccceeeCCCCChhhHHHHHHHHh-----cChhhHHHHHHHHHHhhCceeEEEecCCCCC Confidence 244 69999999999998866554331 22346666654 6899999999999999999999996443332 Q ss_pred ccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEee Q lcl|Aclame:pro 166 PVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRR 245 (535) Q Consensus 166 ~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~ 245 (535) .+|.|..++|+++.-- ++...++ ....+++.+ .+.+ + ....+.++.++. .|. |+. T Consensus 140 -----------~~~~I~~~sP~~~~~i-yD~~~~~-~~~a~~~~~--~d~~-g----~~~~~~~y~~~~--~~~---~~~ 194 (504) T protein:vir:99 140 -----------PDSLIHVKSAMQATGE-WNSRRNA-MDSLLSITS--RDAE-G----HPTGIALYEDGV--TVT---ADM 194 (504) T ss_pred -----------ceeEEEEeccceeEEE-EeCCCCc-eeEEEEEEE--ecCC-C----eEEEEEEEcCCc--EEE---EEE Confidence 2478889999987422 2222221 222222222 2221 1 233344554432 121 211 Q ss_pred eccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeC Q lcl|Aclame:pro 246 ETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTG 323 (535) Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G 323 (535) +..+ . + ..+...|++| ||+|.| +..+.....|.+.+. +|..|..++.+..+++..+++|.++|++|+.| T Consensus 195 ~~~~-~------~-~~~~~~~~~g-vPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~~~~~~~~e~~a~p~r~i~G 265 (504) T protein:vir:99 195 DDDG-D------W-HADVRTHKLG-VPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKGCIRMDGHADVYSFPQLILLG 265 (504) T ss_pred cCCc-e------e-eeccccCCCC-cceEEecccccCccccCcccchhhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcc Confidence 1111 1 1 1234568898 899966 444545556777774 88899999999999999999999999999999 Q ss_pred CCCccc--hhccCcceeeecCcccccCCCC--------CccceeecCcchhH--HHHHHHHHHHHHHHhhhh---hc-cc Q lcl|Aclame:pro 324 LTKDWV--EDVFKDFKVHLGSRAIIPLPQG--------ATAGILQITPNSVP--FEAMTHKESQMIAMGANL---LV-KS 387 (535) Q Consensus 324 ~~~~~~--~d~~~~~~i~iG~~~~~~lp~~--------~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga~~---l~-~~ 387 (535) ++.+.. .+.+....+......+|.+|.+ .++++.|+.+.++. .+.|+.+..++.....-. +. .+ T Consensus 266 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~~~~~l~~~~~~l~~~i~~~a~~t~~P~~~lG~~~ 345 (504) T protein:vir:99 266 ADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVKQFPASSPQPHIEMLEQIAMMFSGETSIPVESLGFSN 345 (504) T ss_pred CCccccccccccccchhhhhhhhhhcCCCccccccccCccceeeecCCCChHHHHHHHHHHHHHHHhhhCCCHHHhcccc Confidence 876543 2233333455555677877754 34667777777664 356777777776544332 21 12 Q ss_pred -ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCceeEEEEecccCCccCCHHHHHHHHHHHh Q lcl|Aclame:pro 388 -GGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIV--NDETVEYNLNTDFPAARLTPNERAELILEWQ 464 (535) Q Consensus 388 -~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~--~~~~~~v~~n~df~~~~~d~~~~~al~~l~~ 464 (535) .++.|+.+..............+...++.+|++++|++....+... ......+++.|.-...+..++.++++.++++ T Consensus 346 ~~n~sSa~Ai~~~~~~L~~ka~~k~~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ 425 (504) T protein:vir:99 346 RANPTSADAYIASREDLIAEAEGATDDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLG 425 (504) T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHh Confidence 2334555555666666777888888999999999999888765321 1112334443332334456889999999999 Q ss_pred cCCC---CHHHHHHHHHhCCCCCccCC-HHHHHHHHHhc-hhhcc----c-CCCcCCCCCCCcccc-cccccccCCCCCC Q lcl|Aclame:pro 465 QGAI---TFKEMRAGLRRAGVASEDDA-KAETEGKATVE-FIAKT----A-AAGKVGDAASGGTNK-AKLNNGNGGGNQA 533 (535) Q Consensus 465 ~G~i---s~et~~~~L~r~gvl~~~~~-~eee~~~i~~e-~~~~~----~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 533 (535) +|.. ..+++++.| |+.+++.. +++++.+.+.. ..+.. . .+....+......+. ++...+.++.|++ T Consensus 426 ag~~l~~~~~~l~~~l---g~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~a~~~~~~~~~~p~~ 502 (504) T protein:vir:99 426 AGPEWLKETEVGLELL---GLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQGAGEPPANEPPAALGRPTL 502 (504) T ss_pred hccccccchHHHHhhc---CCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcCCCCCCCCCCCccCCCccc Confidence 9852 356666544 65322211 11111111110 11111 0 001001101111111 1112223333333 Q ss_pred CC Q lcl|Aclame:pro 534 GN 535 (535) Q Consensus 534 ~~ 535 (535) =- T Consensus 503 ~~ 504 (504) T protein:vir:99 503 VG 504 (504) T ss_pred CC Confidence 22 No 36 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=100.00 E-value=3.1e-30 Score=182.36 Aligned_cols=420 Identities=10% Similarity=0.004 Sum_probs=248.0 Q ss_pred CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcc Q lcl|Aclame:pro 34 NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSR 113 (535) Q Consensus 34 ~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k 113 (535) =|+. | .....++|+++.+.|.|....- |-+.. .. ......+ | .-.|+++.+|+..+|++|.+ T Consensus 1 ~~~~-~--~~~~~~r~~~l~~yy~g~~~~~-----~~~~~---~~-~~~~~~~-----k-i~~n~~~~ivd~~~~~l~g~ 62 (440) T protein:vir:95 1 MLAA-F--LGSQKQRLAILASYAQGDNFSI-----LSGHR---RL-DDEKADY-----R-VRHKWGGYISSFATGYVIGN 62 (440) T ss_pred Chhh-H--HHHHHHHHHHHHHHhccCCccc-----ccccc---cc-cccCCcc-----e-eecchHHHHHHhhhhheecc Confidence 0222 2 2467889999999999964321 10110 00 0001111 2 34699999999999999999 Q ss_pred ccccccCH-----HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhh Q lcl|Aclame:pro 114 DPIRQLPP-----ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTS 188 (535) Q Consensus 114 ~p~~~~p~-----~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~ 188 (535) +|+++.++ .++ .+.++ .+.++++.....+++.++.+|++|++|..+..+ +|-+..++|.+ T Consensus 63 ~~~~~~~~~~~~~~~~-~l~~~-~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~-------------~~~i~~~~p~~ 127 (440) T protein:vir:95 63 PVSIGVMEGGSADQLS-TIKDI-EWQNDINALNSDLAFDASVYGRAYEYHFRDKDK-------------VDRVVLISPLE 127 (440) T ss_pred CceEeeCCCccHHHHH-HHHHH-HHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCC-------------ceEEEEEcccc Confidence 99986432 122 22222 133689999999999999999999999755433 48899999999 Q ss_pred hhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCcc Q lcl|Aclame:pro 189 IINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPF 268 (535) Q Consensus 189 Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l 268 (535) ++--. +....+..+..|+.. . .. ....+.+|+.+ +.| +|.....+. ..+...+...|+| T Consensus 128 ~~~~~-d~~~~~~~~~~i~~~--~-~~-------~~~~~~vyt~~--~~~---~~~~~~~~~-----~~~~~~~~~~~~~ 186 (440) T protein:vir:95 128 MFVIR-DLTVEQNIIAAVHLP--I-YA-------DKVNMTVYTKD--KVI---TYKPYSNNS-----VRLVVDDVKKHSY 186 (440) T ss_pred eEEEE-cCCCCCceEEEEEEE--E-ec-------CceEEEEEeCC--eEE---EEEEecCCc-----cceeecceeeccC Confidence 86532 222222333333322 1 11 12234455442 333 343332221 2233445567999 Q ss_pred ceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccC-----cceeeecCc Q lcl|Aclame:pro 269 KEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFK-----DFKVHLGSR 343 (535) Q Consensus 269 ~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~-----~~~i~iG~~ 343 (535) +.||||.+.+. ..+.+.+.++..|..+..+..|++...+.+.++|+++++|.......+... ......... T Consensus 187 g~vPvv~~~n~----~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~~~~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~ 262 (440) T protein:vir:95 187 NDVPVVEWWNN----RFRMGDYESEISLIDAYDAGQSDTANYMSDLNDAMLLVKGDLDGIKLSPEDAAKMKDANMLFLKT 262 (440) T ss_pred ceeeEEEeeCC----CCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcceeeeecccccCCCCccchhhhhhccceeccc Confidence 99999987543 246788999999999999999999999999999999999964322111110 011111111 Q ss_pred ccc--cCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh---hcccccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 AII--PLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANL---LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 344 ~~~--~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~---l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) ... ....+++++|+..+...-. ...++.+.+.|..++.-+ ...-+++.|+.+..............+...++.+ T Consensus 263 ~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~ 342 (440) T protein:vir:95 263 GISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRFNSTSSGIALLYKMIGLEQVRKDKETYFTKA 342 (440) T ss_pred ccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 111 1245677888877653222 356778877776665332 1222345555555566666777778888899999 Q ss_pred HHHHHHHHHHHcCCCC--CCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIV--NDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGK 495 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~--~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~ 495 (535) |.+++++++.+.+... +.....+++.+........++.++++.++ +|.||+||+++.| +.++ . ++|+++ T Consensus 343 l~~~~~li~~~~~~~~~~~~~~~~v~i~f~~~~p~~~~~~ad~~~kl--~g~iS~et~~~~l---~~~d---~-~~E~~r 413 (440) T protein:vir:95 343 LRRRYELISNIHKAINGPVIEANKLTFTFHPNIPQDVWTEIKAYIEA--GGEISQETLMENA---SFTD---Y-KTEHSR 413 (440) T ss_pred HHHHHHHHHHHHhhcCCcccccccceEEeCCCCCCCHHHHHHHHHHH--hccCcHHHHHHhC---CCCC---c-HHHHHH Confidence 9999999999875321 11223344444444445568889999887 5899999998754 3222 2 334455 Q ss_pred HHhchh-hcccCCCcCCCC-CCCcccc Q lcl|Aclame:pro 496 ATVEFI-AKTAAAGKVGDA-ASGGTNK 520 (535) Q Consensus 496 i~~e~~-~~~~~~~~~~~~-~~~~~~~ 520 (535) |.+|-. ..+......++. .++.+++ T Consensus 414 i~~E~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 414 ILKQGGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred HHHHHHHhhhhHHhhccCCCCCCcCCC Confidence 544422 111111111111 1111111 No 37 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=100.00 E-value=7.2e-30 Score=180.37 Aligned_cols=446 Identities=9% Similarity=-0.028 Sum_probs=257.3 Q ss_pred hhhhhhhhcceecCCCCCCCCcccccCCCCC--ccCHHHH--------HHHHHHHHHHHHhcChHHHHHHHhhhCCCCCC Q lcl|Aclame:pro 6 TTIRRDVQSKVLIPPQAPPTSGLGPSLPNVG--YQRVEFG--------EMLPKWRKIMDCLSGQEAIKAKREEYLPMPSV 75 (535) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~--~~hp~y~--------~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~ 75 (535) -|+-.- +-+++ ...|+.. ...+++.....-|.|..... ..+.+++. T Consensus 1 ~~~~~~--------------------~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~----~~~~~~~~ 56 (474) T protein:vir:10 1 MTLYKL--------------------IDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYV----PIFKRRPI 56 (474) T ss_pred CchHHH--------------------HhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchh----hhhcchhh Confidence 000000 00111 1112211 11222233333333322110 01111100 Q ss_pred CCCC-hhhHHHHHHHHhhh---ccchhHHHHHHHHhhhhhccccccccC------HHHHHHHhccCCCCCCHHHHHHHHH Q lcl|Aclame:pro 76 DSRD-EEQRRRYETYLQRA---IFYNVTARTLDGMMGQVFSRDPIRQLP------PALEAIVEDIDGEGVSLDQQAKKAL 145 (535) Q Consensus 76 ~~~~-~E~~~~Y~~rl~rA---~~~n~~~~tv~~l~G~lF~k~p~~~~p------~~l~~l~~d~d~~G~~L~~~~~~~~ 145 (535) .... ......++....++ .-.|+.+.+|+..+|++|.+||+++.+ +.+..+++++... ++++.....++ T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~-n~~~~~~~~~~ 135 (474) T protein:vir:10 57 EEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIR-NSVDDEDSEIG 135 (474) T ss_pred hhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhh-cCHhHHHHHHH Confidence 0000 00001111111111 337999999999999999999998653 2344455555434 58999999999 Q ss_pred HHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 146 GYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 146 ~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) +.++.+|+||++|..+..+ +|.+..++|.+++-+- +.. .+.+..|++.....+ . ..+... T Consensus 136 ~~~~~~G~a~~~~~~d~~~-------------~~~~~~i~p~~~~~v~-d~~--~~~~~~i~~~~~~~~-~---~~~~~~ 195 (474) T protein:vir:10 136 KMAAICGYGARLAYIDTNG-------------DIRIKNIDPYNVIFVG-DNI--LEPTYSLRYFYEKDD-D---NGTDYV 195 (474) T ss_pred HHHhhcCeEEEEEEeCCCC-------------eeEEEEEcccceEEEE-cCC--CceEEEEEEEEEeeC-C---CceEEE Confidence 9999999999999765443 4899999999987654 222 234544555433221 1 123334 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+.+++.. . +..|+.+.. ..+..+....|++|.||||.+.... .+.+.|.++..|..++....| T Consensus 196 ~~~~y~~~--~---~~~~~~~~~-------~~~~~~~~~~~~~g~vPvv~~~n~~----~g~sd~e~v~~liDa~d~~~S 259 (474) T protein:vir:10 196 YAEFYDNA--Y---YYVFRGEGI-------DALQEVGRYEHLFDYNPLFGVPNNK----EMIGDAEKVIHLIDAYDLTMS 259 (474) T ss_pred EEEEEcCc--e---EEEEeecCC-------CcccccccccCCCCccceEEecCCC----CCCCchHHHHHHHHHHHHHHH Confidence 44444432 2 233443321 1233445567999999999875432 367788999999999999999 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANLL 384 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~l 384 (535) ++.+.+.+.+.|+++++|...+...... +. ..+.++..+++++++|+......-. ...++.+.++|...+.-+- T Consensus 260 ~~~~~~~~~~~~~l~i~g~~~~~~~~~~----~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 334 (474) T protein:vir:10 260 DASSEISQTRLAYLVLRGMGMSEEMIQE----TQ-KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVN 334 (474) T ss_pred HHHHHHHHhhcchhhhccCCCCchhhhh----hh-hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 9999999999999999998654422111 11 1244455678899999987754333 4667888888877664332 Q ss_pred ---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---C-ceeEEEEecccCCccCCHHHHH Q lcl|Aclame:pro 385 ---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN---D-ETVEYNLNTDFPAARLTPNERA 457 (535) Q Consensus 385 ---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~---~-~~~~v~~n~df~~~~~d~~~~~ 457 (535) ...+++.|+.+..................++.++++++++++.+++.... + .-..+++.+....+.-..+.++ T Consensus 335 ~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~ 414 (474) T protein:vir:10 335 FNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQ 414 (474) T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHH Confidence 22235566555566666667777888889999999999999998764211 1 1123444444444455678888 Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 458 ELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 458 al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) ++.++ .|.||++|+++.| +.+ .+.++|.+||..|-.......+. ...++.++...++.|= T Consensus 415 ~~~kl--~g~iS~et~~~~l---~~v---~d~~~E~eri~~E~~e~~~~~~~---~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:10 415 VLINL--KGQVSERTRLGQS---QLV---DDVDYELDEMEKESLEFNDKLPD---IDEGDANDKSQNNQSE 474 (474) T ss_pred HHHHH--hccCchHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHhhccc---ccCCCcCCCCccccCC Confidence 88887 4899999998754 222 34677777776654322111111 1112222222222222 No 38 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=100.00 E-value=7.2e-30 Score=180.37 Aligned_cols=446 Identities=9% Similarity=-0.028 Sum_probs=257.3 Q ss_pred hhhhhhhhcceecCCCCCCCCcccccCCCCC--ccCHHHH--------HHHHHHHHHHHHhcChHHHHHHHhhhCCCCCC Q lcl|Aclame:pro 6 TTIRRDVQSKVLIPPQAPPTSGLGPSLPNVG--YQRVEFG--------EMLPKWRKIMDCLSGQEAIKAKREEYLPMPSV 75 (535) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~--~~hp~y~--------~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~ 75 (535) -|+-.- +-+++ ...|+.. ...+++.....-|.|..... ..+.+++. T Consensus 1 ~~~~~~--------------------~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~----~~~~~~~~ 56 (474) T protein:vir:94 1 MTLYKL--------------------IDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYV----PIFKRRPI 56 (474) T ss_pred CchHHH--------------------HhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchh----hhhcchhh Confidence 000000 00111 1112211 11222233333333322110 01111100 Q ss_pred CCCC-hhhHHHHHHHHhhh---ccchhHHHHHHHHhhhhhccccccccC------HHHHHHHhccCCCCCCHHHHHHHHH Q lcl|Aclame:pro 76 DSRD-EEQRRRYETYLQRA---IFYNVTARTLDGMMGQVFSRDPIRQLP------PALEAIVEDIDGEGVSLDQQAKKAL 145 (535) Q Consensus 76 ~~~~-~E~~~~Y~~rl~rA---~~~n~~~~tv~~l~G~lF~k~p~~~~p------~~l~~l~~d~d~~G~~L~~~~~~~~ 145 (535) .... ......++....++ .-.|+.+.+|+..+|++|.+||+++.+ +.+..+++++... ++++.....++ T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~~-n~~~~~~~~~~ 135 (474) T protein:vir:94 57 EEKEDFETGGNVRRLDVSVNNKLNNSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAIR-NSVDDEDSEIG 135 (474) T ss_pred hhhhhhhhcccccccccCcccccccchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHhh-cCHhHHHHHHH Confidence 0000 00001111111111 337999999999999999999998653 2344455555434 58999999999 Q ss_pred HHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 146 GYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 146 ~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) +.++.+|+||++|..+..+ +|.+..++|.+++-+- +.. .+.+..|++.....+ . ..+... T Consensus 136 ~~~~~~G~a~~~~~~d~~~-------------~~~~~~i~p~~~~~v~-d~~--~~~~~~i~~~~~~~~-~---~~~~~~ 195 (474) T protein:vir:94 136 KMAAICGYGARLAYIDTNG-------------DIRIKNIDPYNVIFVG-DNI--LEPTYSLRYFYEKDD-D---NGTDYV 195 (474) T ss_pred HHHhhcCeEEEEEEeCCCC-------------eeEEEEEcccceEEEE-cCC--CceEEEEEEEEEeeC-C---CceEEE Confidence 9999999999999765443 4899999999987654 222 234544555433221 1 123334 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+.+++.. . +..|+.+.. ..+..+....|++|.||||.+.... .+.+.|.++..|..++....| T Consensus 196 ~~~~y~~~--~---~~~~~~~~~-------~~~~~~~~~~~~~g~vPvv~~~n~~----~g~sd~e~v~~liDa~d~~~S 259 (474) T protein:vir:94 196 YAEFYDNA--Y---YYVFRGEGI-------DALQEVGRYEHLFDYNPLFGVPNNK----EMIGDAEKVIHLIDAYDLTMS 259 (474) T ss_pred EEEEEcCc--e---EEEEeecCC-------CcccccccccCCCCccceEEecCCC----CCCCchHHHHHHHHHHHHHHH Confidence 44444432 2 233443321 1233445567999999999875432 367788999999999999999 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhhh Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANLL 384 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~l 384 (535) ++.+.+.+.+.|+++++|...+...... +. ..+.++..+++++++|+......-. ...++.+.++|...+.-+- T Consensus 260 ~~~~~~~~~~~~~l~i~g~~~~~~~~~~----~~-~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~ 334 (474) T protein:vir:94 260 DASSEISQTRLAYLVLRGMGMSEEMIQE----TQ-KSGAFELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVN 334 (474) T ss_pred HHHHHHHHhhcchhhhccCCCCchhhhh----hh-hcceeEecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcc Confidence 9999999999999999998654422111 11 1244455678899999987754333 4667888888877664332 Q ss_pred ---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---C-ceeEEEEecccCCccCCHHHHH Q lcl|Aclame:pro 385 ---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN---D-ETVEYNLNTDFPAARLTPNERA 457 (535) Q Consensus 385 ---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~---~-~~~~v~~n~df~~~~~d~~~~~ 457 (535) ...+++.|+.+..................++.++++++++++.+++.... + .-..+++.+....+.-..+.++ T Consensus 335 ~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~ 414 (474) T protein:vir:94 335 FNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQ 414 (474) T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHH Confidence 22235566555566666667777888889999999999999998764211 1 1123444444444455678888 Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 458 ELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 458 al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) ++.++ .|.||++|+++.| +.+ .+.++|.+||..|-.......+. ...++.++...++.|= T Consensus 415 ~~~kl--~g~iS~et~~~~l---~~v---~d~~~E~eri~~E~~e~~~~~~~---~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:94 415 VLINL--KGQVSERTRLGQS---QLV---DDVDYELDEMEKESLEFNDKLPD---IDEGDANDKSQNNQSE 474 (474) T ss_pred HHHHH--hccCchHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHhhccc---ccCCCcCCCCccccCC Confidence 88887 4899999998754 222 34677777776654322111111 1112222222222222 No 39 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=100.00 E-value=8.4e-30 Score=179.98 Aligned_cols=443 Identities=11% Similarity=0.049 Sum_probs=262.2 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCH---------------H--------HHHHHHHHHHHHHHhc Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRV---------------E--------FGEMLPKWRKIMDCLS 57 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp---------------~--------y~~~~~~w~~i~d~~~ 57 (535) |- ++ ++|| ++.+|- + +....++.+++.+.|. T Consensus 1 ~~------------~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~ 54 (474) T protein:vir:94 1 MF------------NI-------------IRMP-WDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYD 54 (474) T ss_pred Cc------------cc-------------cccc-CCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 11 11 1222 221111 1 2234456666777777 Q ss_pred ChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCC Q lcl|Aclame:pro 58 GQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVS 136 (535) Q Consensus 58 G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~ 136 (535) |...+..+...+.+..... -.....|.+ .|+.+.+|+..++++|.++++++..+ ....+++.+- .++ T Consensus 55 g~~~i~~~~~~~~~~~~~~---------~~~~~~ki~-~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~--~n~ 122 (474) T protein:vir:94 55 KDNDIVKQMKKVDVHGNID---------YDKPDWRIT-TNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVL--DTR 122 (474) T ss_pred cccchhcccchhccccccc---------cccCcceee-cchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHH--hcc Confidence 7655433211111111000 000112333 69999999999999999999997653 3344444442 257 Q ss_pred HHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC Q lcl|Aclame:pro 137 LDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD 216 (535) Q Consensus 137 L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~ 216 (535) ++.....+++.++.+|+||++|..+..+ +|.+..++|.+++-.--+.+ ...+..+ +|.+..+ T Consensus 123 ~~~~~~e~~~~~~~~G~~~~~~~~d~~~-------------~~~i~~~~p~~~~~v~d~~~--~~~~~~~-ir~~~~~-- 184 (474) T protein:vir:94 123 WDNKLIDILTATSNKGIDWLQVYINENG-------------EMKLFRVPAEQAIPIWVDKE--REELKSF-IRYYKFN-- 184 (474) T ss_pred HHHHHHHHHHHHhhcCceEEEEEecCCC-------------eeEEEEEcccceEEEEcCCC--CCceEEE-EEEEEec-- Confidence 8999999999999999999999866544 48999999999875422211 2234332 3333211 Q ss_pred CCcccceeeEEEEEeecCCceEEEEEEeeeccCC--ccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHH Q lcl|Aclame:pro 217 DGFETTYVQQWRVLQLNAEGNYQVERWRRETQEE--MYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLC 294 (535) Q Consensus 217 d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~--~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA 294 (535) ..+.+.+++.+. . ..|+.+..+. .......+.......|+++.||||.+.+.. .+.+.|.++. T Consensus 185 ------~~~~~~~yt~~~--~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~ 249 (474) T protein:vir:94 185 ------NEEKVEFWTDTT--V---TYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNP----EEVSDIWMYK 249 (474) T ss_pred ------CeEEEEEEeCCe--E---EEEEEcCCccccccccCcCcccccccccCCCccceEEecCCc----CCCCcHHHHH Confidence 122344555432 2 2233222211 111112233344567899999999885432 3577789999 Q ss_pred HHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHH Q lcl|Aclame:pro 295 EVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKE 373 (535) Q Consensus 295 ~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e 373 (535) .|..+..+..|++...+.+.+.|+++++|.+.+...+... .+....++.++++++++|++.+...-. ...++.+. T Consensus 250 ~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (474) T protein:vir:94 250 SIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEEFMR----GLKYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMR 325 (474) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhh----hhhccceeeccCCCceeEEeecCCHHHHHHHHHHHH Confidence 9999999999999999999999999999987654333211 233456677888999999987754433 35677777 Q ss_pred HHHHHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCcc Q lcl|Aclame:pro 374 SQMIAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAAR 450 (535) Q Consensus 374 ~qm~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~ 450 (535) +.|...+.-+- ...+++.|+.+..............+...++.++++++++++.+.|...+...+ ++.+.+.... T Consensus 326 ~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i--~v~f~~~~p~ 403 (474) T protein:vir:94 326 VYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDI--EISFNFNRMM 403 (474) T ss_pred HHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccee--eEEeccCccc Confidence 77766654331 112345555555555666777788888899999999999999999866544444 4444555554 Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccccc-ccccccCC Q lcl|Aclame:pro 451 LTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKA-KLNNGNGG 529 (535) Q Consensus 451 ~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 529 (535) .+++.++++ .++|.||++|++..| + ..++.++|.+||..|-.......+...+ .+.+++. ....+++- T Consensus 404 ~~~e~a~~~---~~~g~iS~et~l~~l---~---~v~D~~~E~eri~~E~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 472 (474) T protein:vir:94 404 NDAEQSQII---AQSQYLSRETLVKSS---P---LVDDYKAELERIEQEQMEYNKQLPNLDD--GGADGAQQQEGSNNKE 472 (474) T ss_pred CHHHHHHHH---HHcCCCCHHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHhhccccCC--CCCCCcccCCCCcccc Confidence 456666655 456999999998654 2 2234667777877664332211111111 1111111 11111111 Q ss_pred CC Q lcl|Aclame:pro 530 GN 531 (535) Q Consensus 530 ~~ 531 (535) ++ T Consensus 473 ~e 474 (474) T protein:vir:94 473 SE 474 (474) T ss_pred cC Confidence 12 No 40 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=100.00 E-value=8.4e-30 Score=179.98 Aligned_cols=443 Identities=11% Similarity=0.049 Sum_probs=262.2 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCH---------------H--------HHHHHHHHHHHHHHhc Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRV---------------E--------FGEMLPKWRKIMDCLS 57 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp---------------~--------y~~~~~~w~~i~d~~~ 57 (535) |- ++ ++|| ++.+|- + +....++.+++.+.|. T Consensus 1 ~~------------~~-------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~ 54 (474) T protein:vir:97 1 MF------------NI-------------IRMP-WDKPYGEEVVEQLKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYD 54 (474) T ss_pred Cc------------cc-------------cccc-CCCchhhHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 11 11 1222 221111 1 2234456666777777 Q ss_pred ChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCC Q lcl|Aclame:pro 58 GQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVS 136 (535) Q Consensus 58 G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~ 136 (535) |...+..+...+.+..... -.....|.+ .|+.+.+|+..++++|.++++++..+ ....+++.+- .++ T Consensus 55 g~~~i~~~~~~~~~~~~~~---------~~~~~~ki~-~n~~k~Ivd~~~~~l~g~p~~~~~~d~~~~~~l~~~~--~n~ 122 (474) T protein:vir:97 55 KDNDIVKQMKKVDVHGNID---------YDKPDWRIT-TNFHQNLVDQKVSYVASKPVTYSCEDENVLKVIHDVL--DTR 122 (474) T ss_pred cccchhcccchhccccccc---------cccCcceee-cchHHHHHHHHHhhhhcCCceeccCcHHHHHHHHHHH--hcc Confidence 7655433211111111000 000112333 69999999999999999999997653 3344444442 257 Q ss_pred HHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC Q lcl|Aclame:pro 137 LDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD 216 (535) Q Consensus 137 L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~ 216 (535) ++.....+++.++.+|+||++|..+..+ +|.+..++|.+++-.--+.+ ...+..+ +|.+..+ T Consensus 123 ~~~~~~e~~~~~~~~G~~~~~~~~d~~~-------------~~~i~~~~p~~~~~v~d~~~--~~~~~~~-ir~~~~~-- 184 (474) T protein:vir:97 123 WDNKLIDILTATSNKGIDWLQVYINENG-------------EMKLFRVPAEQAIPIWVDKE--REELKSF-IRYYKFN-- 184 (474) T ss_pred HHHHHHHHHHHHhhcCceEEEEEecCCC-------------eeEEEEEcccceEEEEcCCC--CCceEEE-EEEEEec-- Confidence 8999999999999999999999866544 48999999999875422211 2234332 3333211 Q ss_pred CCcccceeeEEEEEeecCCceEEEEEEeeeccCC--ccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHH Q lcl|Aclame:pro 217 DGFETTYVQQWRVLQLNAEGNYQVERWRRETQEE--MYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLC 294 (535) Q Consensus 217 d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~--~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA 294 (535) ..+.+.+++.+. . ..|+.+..+. .......+.......|+++.||||.+.+.. .+.+.|.++. T Consensus 185 ------~~~~~~~yt~~~--~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~ 249 (474) T protein:vir:97 185 ------NEEKVEFWTDTT--V---TYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNP----EEVSDIWMYK 249 (474) T ss_pred ------CeEEEEEEeCCe--E---EEEEEcCCccccccccCcCcccccccccCCCccceEEecCCc----CCCCcHHHHH Confidence 122344555432 2 2233222211 111112233344567899999999885432 3577789999 Q ss_pred HHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHH Q lcl|Aclame:pro 295 EVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKE 373 (535) Q Consensus 295 ~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e 373 (535) .|..+..+..|++...+.+.+.|+++++|.+.+...+... .+....++.++++++++|++.+...-. ...++.+. T Consensus 250 ~liDa~n~~~s~~~~~~~~~~~~~lv~~g~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 325 (474) T protein:vir:97 250 SIIDAIDKRLSDAQNMFDESVELIYILKGYEGEDLEEFMR----GLKYYKAINVDGDGGVETIQVEVPVSSTKEYIDLMR 325 (474) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeeecCCcccchhhhh----hhhccceeeccCCCceeEEeecCCHHHHHHHHHHHH Confidence 9999999999999999999999999999987654333211 233456677888999999987754433 35677777 Q ss_pred HHHHHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCcc Q lcl|Aclame:pro 374 SQMIAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAAR 450 (535) Q Consensus 374 ~qm~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~ 450 (535) +.|...+.-+- ...+++.|+.+..............+...++.++++++++++.+.|...+...+ ++.+.+.... T Consensus 326 ~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~d~~~i--~v~f~~~~p~ 403 (474) T protein:vir:97 326 VYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLKTDVKDI--EISFNFNRMM 403 (474) T ss_pred HHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccee--eEEeccCccc Confidence 77766654331 112345555555555666777788888899999999999999999866544444 4444555554 Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccccc-ccccccCC Q lcl|Aclame:pro 451 LTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKA-KLNNGNGG 529 (535) Q Consensus 451 ~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 529 (535) .+++.++++ .++|.||++|++..| + ..++.++|.+||..|-.......+...+ .+.+++. ....+++- T Consensus 404 ~~~e~a~~~---~~~g~iS~et~l~~l---~---~v~D~~~E~eri~~E~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 472 (474) T protein:vir:97 404 NDAEQSQII---AQSQYLSRETLVKSS---P---LVDDYKAELERIEQEQMEYNKQLPNLDD--GGADGAQQQEGSNNKE 472 (474) T ss_pred CHHHHHHHH---HHcCCCCHHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHhhccccCC--CCCCCcccCCCCcccc Confidence 456666655 456999999998654 2 2234667777877664332211111111 1111111 11111111 Q ss_pred CC Q lcl|Aclame:pro 530 GN 531 (535) Q Consensus 530 ~~ 531 (535) ++ T Consensus 473 ~e 474 (474) T protein:vir:97 473 SE 474 (474) T ss_pred cC Confidence 12 No 41 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=100.00 E-value=8.2e-30 Score=180.05 Aligned_cols=478 Identities=9% Similarity=-0.014 Sum_probs=278.6 Q ss_pred CcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccC---HH----H-----HHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 2 ARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQR---VE----F-----GEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~h---p~----y-----~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) .-|-..+++++.+..-+-----+.+-..+.|+....-. ++ + ....++++++.+.|.|...+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~----- 75 (511) T protein:vir:93 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLV----- 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCcccc----- Confidence 33445566665554333333344566677777432221 21 1 2245678888888888654311 Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) +... ... .++.. .| .-.|+.+.+++..+|++|.++|+++..+ .....++++-.. ++++.....+++.+ T Consensus 76 --~~~~-~~~-----~~~~~-~k-i~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~~~~ 144 (511) T protein:vir:93 76 --ELTR-RKE-----EYMAD-NR-VAHDYASYISDFINGYFLGNPIQYQDDDKDVLEVIEAFNDL-NDVESHNRSLGLDL 144 (511) T ss_pred --ccCc-Ccc-----cccCc-ce-eecchHHHHHHHHhhhhcccCeeeccCChHHHHHHHHHHhh-cCHhHHHHHHHHHH Confidence 1110 000 01111 12 3369999999999999999999997543 333444444322 68999999999999 Q ss_pred HhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 149 l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) +.+|++|++|..+..+ +|.+..++|.+++-.--+.+. .+.+..|++... ...++...+.+..+. T Consensus 145 ~~~G~ay~~vy~de~~-------------~~~i~~~~p~~~~~vydd~~~-~~~~~~vr~~~~--~~~~~~~~~~~~~~~ 208 (511) T protein:vir:93 145 SIYGKAYELMIRNQDD-------------ETRLYKSDAMSTFVIYDNTIE-RNSIAGVRYLRT--KPIDKTDEDEVFTVD 208 (511) T ss_pred HhcCeeEEEEEeCCCC-------------ceEEEEEccceeEEEEcCCCC-CceEEEEEEEEe--eeccccccceEEEEE Confidence 9999999999765433 388999999998653222222 234444444332 222233345555666 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) +++.+ .. ..|+.+..+.... .........|+++.||||.+.... .+.+.+.++..|-.++....|++. T Consensus 209 iyt~~--~i---~~~~~~~~~~~~~---~~~~~~~~~~~~g~vPvv~~~nn~----~g~gd~e~v~~liDa~d~~~S~~~ 276 (511) T protein:vir:93 209 LFTSH--GV---YRYLTSRTNGLKL---TPRENGFESHSFERMPITEFSNNE----RRKGDYEKVITLIDLYDNAESDTA 276 (511) T ss_pred EEeCC--cE---EEEEecCCCcccc---ccccccccccCCCccceEEecCCC----CCCCchhhHHHHHHHHHHHHHHHH Confidence 66654 22 3344332222111 112234456999999999875422 356778999999999999999999 Q ss_pred HHHHHhcCceeEeeCCCCccchhcc--CcceeeecCc------ccccCCCCCccceeecCcchh-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 EMAFVAGQPTAFFTGLTKDWVEDVF--KDFKVHLGSR------AIIPLPQGATAGILQITPNSV-PFEAMTHKESQMIAM 379 (535) Q Consensus 309 ~~l~~~~~P~~~~~G~~~~~~~d~~--~~~~i~iG~~------~~~~lp~~~~~~~~e~~~~~l-~~~~l~~~e~qm~~l 379 (535) ..+++.+.|+++++|.......+.. ....+..... ......++++++|+...-..- ....++.+.+.|..+ T Consensus 277 ~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~~~ 356 (511) T protein:vir:93 277 NYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMF 356 (511) T ss_pred HHHHHhhCcceeeecCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 9999999999999996543322211 1111111111 112234578889998654332 235677777777666 Q ss_pred hhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC----ceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND----ETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~----~~~~v~~n~df~~~~~d 452 (535) +.-+- ...+++.|+.+..................++.++++.+++++.+++..... .-..+++.+....+... T Consensus 357 s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~~~d~~~i~~~f~~~~p~n~ 436 (511) T protein:vir:93 357 TNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSL 436 (511) T ss_pred hCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccccceEEeCCCCCCCH Confidence 54332 222356666665666667777788888899999999999998876532211 11234555555555667 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCC--CcCCCCCCCcccccccccccCCC Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAA--GKVGDAASGGTNKAKLNNGNGGG 530 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 530 (535) ++.++++.++ .|.||++|+++.| +...+.++|++||..|-....... ....++ .+.+++.+ . .+.+ T Consensus 437 ~e~~~~~~kl--~g~iS~et~~~~l------~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~ 504 (511) T protein:vir:93 437 IEELKAYIDS--GGKISQTTLMSLF------SFFQDPELEVKKIEEDEKESIKKAQKGIYKDP-RDINDDEQ-D--DDTK 504 (511) T ss_pred HHHHHHHHHH--hccCchHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHHHhhhcccCC-CCCCCCCC-C--Cccc Confidence 8889998888 5899999988654 222345677777776643221111 000110 00011100 0 1111 Q ss_pred CCCCC Q lcl|Aclame:pro 531 NQAGN 535 (535) Q Consensus 531 ~~~~~ 535 (535) +.+.. T Consensus 505 ~~~~~ 509 (511) T protein:vir:93 505 DTVDK 509 (511) T ss_pred ccccc Confidence 11111 No 42 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=100.00 E-value=4.7e-30 Score=181.36 Aligned_cols=417 Identities=9% Similarity=0.024 Sum_probs=254.9 Q ss_pred CC--CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhh Q lcl|Aclame:pro 32 LP--NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQ 109 (535) Q Consensus 32 M~--~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~ 109 (535) |. .|..---.+....++++++++.|.|...+. .+..... ++. ..|.. .|+.+.+|+..+++ T Consensus 1 l~~~~l~~~i~~~~~~~~r~~~l~~yy~g~~~il-------~~~~~~~--------~~~-~~ki~-~n~~~~ivd~~~~~ 63 (429) T protein:vir:98 1 MTKDLLSELIQKHRSFNLSYSAYKQLYEGDHAIL-------QQKQKEQ--------YKP-DNRLV-VNFAKYIVDTFNGY 63 (429) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------ccccccc--------CCC-cceee-cchHHHHHHHHhhh Confidence 33 122221234566789999999999976543 2211110 111 01222 69999999999999 Q ss_pred hhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhh Q lcl|Aclame:pro 110 VFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTS 188 (535) Q Consensus 110 lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~ 188 (535) +|.++++++.++ .....++++- +.|+++..+..+++.++.+|++|++|..+..| +|-+..++|.+ T Consensus 64 l~g~~~~~~~~~~~~~~~l~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g-------------~~~~~~~~p~~ 129 (429) T protein:vir:98 64 FIGVPVQTSHENKQVSNYLELLD-GYNDQDDNNAELSKICSIYGHGYELVFNDENA-------------EAGITYLTPLE 129 (429) T ss_pred hcccCceeecCChHHHHHHHHHH-hhcCHhHHHHHHHHHHhhcCeEEEEEEecCCC-------------cEEEEEEcccc Confidence 999999997643 2333333332 22789999999999999999999999765443 48899999999 Q ss_pred hhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCcc Q lcl|Aclame:pro 189 IINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPF 268 (535) Q Consensus 189 Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l 268 (535) ++---.+.. ....+..|++ . .+.+ .+..+.+++.+ +++.|..... .+...+...|+| T Consensus 130 ~~~v~dd~~-~~~~~~~i~~--~-~~~~------~~~~~~~~~~~-----~~~~~~~~~~--------~~~~~~~~~~~~ 186 (429) T protein:vir:98 130 AFIVYDDSI-RQKPLFAVRY--F-YNKG------GVLEGSYSDAS-----NITYFKDGEK--------GIEIGESEPHPF 186 (429) T ss_pred eEEEEeCCC-CCceEEEEEE--E-EecC------ceEEEEEEeCc-----eEEEEEecCC--------ceEecccccccC Confidence 854221211 2233333322 1 1111 12223223221 1233332211 123344567999 Q ss_pred ceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccC Q lcl|Aclame:pro 269 KEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPL 348 (535) Q Consensus 269 ~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~l 348 (535) +.||||.+... ..+.+.+.++..|..++.+..|++...+.+.++|+++++|.+.+..... .+-...++.+ T Consensus 187 g~vPvv~~~n~----~~g~sd~e~v~~liD~~d~~~s~~~~~~~~~~~p~~~i~g~~~~~~~~~------~~~~~~~~~~ 256 (429) T protein:vir:98 187 DGVPMIEYVEN----EERQSLLASVVTLINAFNKAISEKANDVEYFADAYLKILGAELDDETLK------SLRDTRIINL 256 (429) T ss_pred CccceEEecCC----CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCCCCcchhh------hHhhCceeec Confidence 99999987542 2367889999999999999999999999999999999999765432221 1122345555 Q ss_pred CC----CCccceeecCcchhHH-HHHHHHHHHHHHHhhhh--hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 349 PQ----GATAGILQITPNSVPF-EAMTHKESQMIAMGANL--LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKA 421 (535) Q Consensus 349 p~----~~~~~~~e~~~~~l~~-~~l~~~e~qm~~lga~~--l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~ 421 (535) +. +++++|+......-.. ..++.+.+.|..++.-+ ...+.++.|+.+..............+...++.+++++ T Consensus 257 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~ 336 (429) T protein:vir:98 257 KDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRTAMVANISDESFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRR 336 (429) T ss_pred cCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 43 3467888776543333 45777777776665322 22334566655555666667777888888999999999 Q ss_pred HHHHHHHcCCCCCCce-eEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhch Q lcl|Aclame:pro 422 LRWANQFQTGIVNDET-VEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEF 500 (535) Q Consensus 422 lr~~a~~~g~~~~~~~-~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~ 500 (535) +++++.+++....... ..+++.+........++.++++.++ +|.+|+||+++.| +.+ .+.++|.+||++|- T Consensus 337 ~~li~~~~~~~~~~~d~~~i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~~~~l---~~v---~d~~~E~~ri~~E~ 408 (429) T protein:vir:98 337 YKLIASYPTSKIGPKDWIGIKYKFTRNLPANLLEESQIAGNL--AGIVSEETQVGVL---SIV---ENPQKEIERKNSDK 408 (429) T ss_pred HHHHHHHhccCCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhC---CCC---CCHHHHHHHHHHHH Confidence 9999999874332211 2244444444445567888888887 6899999988654 322 34667777776664 Q ss_pred hhcc-cCCCcCCCCCCCcccc Q lcl|Aclame:pro 501 IAKT-AAAGKVGDAASGGTNK 520 (535) Q Consensus 501 ~~~~-~~~~~~~~~~~~~~~~ 520 (535) .... ...+..+...+..+.+ T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 409 STLISRQAGGLNGQNTTTILE 429 (429) T ss_pred HHHHHHHHhhhcCCCCCCCCC Confidence 3211 1111111111111111 No 43 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=100.00 E-value=1.8e-29 Score=178.13 Aligned_cols=477 Identities=8% Similarity=-0.023 Sum_probs=279.7 Q ss_pred CcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccC---HH----H-----HHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 2 ARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQR---VE----F-----GEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~h---p~----y-----~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) .-|-..+++++-+..-+-----+.+-..+.|+....-. ++ + ....++|+++.+.|.|...+-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~----- 75 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLV----- 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCcccc----- Confidence 33445566665554333333344566667777433221 21 1 2235678888998988654311 Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) .+. .... .++.. .|.+ .|+++.+++..+|++|.++|+++.. +.....+.++-.. ++++.....+++.+ T Consensus 76 ~~~---~~~~-----~~~~~-~ki~-~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~~~-n~~~~~~~~~~~~~ 144 (511) T protein:vir:96 76 ELT---RRKE-----EYMAD-NRVA-HDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDL-NDVESHNRSLGLDL 144 (511) T ss_pred ccC---cCcc-----cccCc-ceee-cchHHHHHHHHHhhhccCCceeecCchHHHHHHHHHHhh-cCHHHHHHHHHHHH Confidence 111 0000 11111 1323 6999999999999999999999754 3344444544333 68999999999999 Q ss_pred HhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 149 l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) +.+|++|++|..+..+ +|-+..++|.+++-.--+.+ ..+.+..|+..+. ...++...+.+..+. T Consensus 145 ~i~G~a~~~vy~ded~-------------~~~i~~~~p~~~~~vydd~~-~~~~~~~vr~~~~--~~~d~~~~~~~~~~~ 208 (511) T protein:vir:96 145 SIYGKAYELMIRNQDD-------------ETRLYKSDAMSTFVIYDNTI-ERNSIAGVRYLRT--KPIDKTDEDEVFTVD 208 (511) T ss_pred HhcCeeEEEEEeCCCC-------------ceEEEEEccceeEEEEcCCC-CCceEEEEEEEEe--eeccccccceEEEEE Confidence 9999999999765433 48888999999875322222 1234444444322 222222334445555 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) +++.+ +.| .|+.+..+.. ...........|+++.||||.+.... .+.+.+.++..|-.++....|++. T Consensus 209 iyt~~--~i~---~~~~~~~~~~---~~~~~~~~~~~~~~~~vPvv~~~nn~----~g~gd~e~v~~liDa~d~~~S~~~ 276 (511) T protein:vir:96 209 LFTSH--GVY---RYLTSRTNGL---KLTPRENGFESHSFERMPITEFSNNE----RRKGDYEKVITLIDLYDNAESDTA 276 (511) T ss_pred EEeCC--cEE---EEEecCCCcc---cccccccccccccCCceeeEEecCCC----CCCCchhhhHHHHHHHHHHHHHHH Confidence 55543 233 3333322211 11122234567999999999875422 356778999999999999999999 Q ss_pred HHHHHhcCceeEeeCCCCccchhcc---CcceeeecC-----cccccCCCCCccceeecCcchh-HHHHHHHHHHHHHHH Q lcl|Aclame:pro 309 EMAFVAGQPTAFFTGLTKDWVEDVF---KDFKVHLGS-----RAIIPLPQGATAGILQITPNSV-PFEAMTHKESQMIAM 379 (535) Q Consensus 309 ~~l~~~~~P~~~~~G~~~~~~~d~~---~~~~i~iG~-----~~~~~lp~~~~~~~~e~~~~~l-~~~~l~~~e~qm~~l 379 (535) ..+++.+.|+++++|.......+.. ....+.+.+ ........+++++|+...-..- ....++.+.+.|..+ T Consensus 277 ~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~ 356 (511) T protein:vir:96 277 NYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMF 356 (511) T ss_pred HHHHHhhCceeeeecCccCCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 9999999999999996533222211 111121111 1112234467888988654322 245677777777666 Q ss_pred hhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----CCceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIV----NDETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~----~~~~~~v~~n~df~~~~~d 452 (535) +.-+- ..-+++.|+.+..................++.+|++.+++++.+++... +.+-..+++.+....+... T Consensus 357 s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~p~n~ 436 (511) T protein:vir:96 357 TNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDANKDFNTVRYVYNRNLPKSL 436 (511) T ss_pred hCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccccceEEeCCCCCCCH Confidence 54332 2223566666666666777777888888999999999999988865321 1112234555555555556 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcc-----cCCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKT-----AAAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 527 (535) ++.++++.++ .|.||++|+++.| + ...+.++|++||.+|-.... .....+.+...+.++....+... T Consensus 437 ~e~~~~~~kl--~G~iS~et~l~~l---~---~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (511) T protein:vir:96 437 IEELKAYIDS--GGKISQTTLMSLF---S---FFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVD 508 (511) T ss_pred HHHHHHHHHH--hccCChHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCccccccc Confidence 7888888887 5899999988644 2 22346677777877643221 11122222222222222222211 Q ss_pred CCC Q lcl|Aclame:pro 528 GGG 530 (535) Q Consensus 528 ~~~ 530 (535) -+. T Consensus 509 ~~~ 511 (511) T protein:vir:96 509 KKE 511 (511) T ss_pred ccC Confidence 111 No 44 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=100.00 E-value=1.9e-29 Score=178.01 Aligned_cols=477 Identities=8% Similarity=-0.023 Sum_probs=279.0 Q ss_pred CcchhhhhhhhhcceecCCCCCCCCcccccCCCCCcc---CHH----H-----HHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 2 ARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQ---RVE----F-----GEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~---hp~----y-----~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) .-|-..|+..+-+..-|-----+.+-..+.|+....- .++ + ....++|+.+.+.|.|...+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~----- 75 (511) T protein:vir:99 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLV----- 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCccccchhhhhhhccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCcccc----- Confidence 2334444444444333332334456677777743222 221 1 1235678888888888654311 Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) -+. .... .++.. .| .-.|+.+.+|+..+|++|.++|+++.++ .+...+.++-.. ++++.....+++.+ T Consensus 76 ~~~---~~~~-----~~~~~-~k-i~~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~~~~ 144 (511) T protein:vir:99 76 ELT---RRKE-----EYMAD-NR-VAHDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDL-NDVESHNRSLGLDL 144 (511) T ss_pred ccC---cccc-----cccCc-ce-eecchHHHHHHHHHhhhcccCceeecCchHHHHHHHHHHhh-cCHhHHHHHHHHHH Confidence 111 0000 01111 12 3369999999999999999999997543 344444444333 58999999999999 Q ss_pred HhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 149 l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) +.+|++|++|.....+ +|.+..++|.+++-.--+.+. .+.+..|++.+ ....++...+.+..+. T Consensus 145 ~i~G~a~~~vy~ded~-------------~~~i~~~~p~~~~~vyd~~~~-~~~~~~vr~~~--~~~~~~~~~~~~~~~~ 208 (511) T protein:vir:99 145 SIYGKAYELMIRNQDD-------------ETRLYKSDAMSTFVIYDNTIE-RNSIAGVRYLR--TKPIDKTDEDEVFTVD 208 (511) T ss_pred HhcCeeEEEEEeCCCC-------------ceEEEEEccceeEEEEcCCCC-CceEEEEEEEE--eeecccCccceEEEEE Confidence 9999999999765433 488999999998754322222 23333333322 2222222334455555 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) +++.+ +.| .|+.+..+.... .........|+++.||||.+.... .+.+.|.++..|-.++....|++. T Consensus 209 vyt~~--~i~---~~~~~~~~~~~~---~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~~liDa~d~~~S~~~ 276 (511) T protein:vir:99 209 LFTSH--GVY---RYLTSRTNGLKL---TPRENGFESHSFERMPITEFSNNE----RRKGDYEKVITLIDLYDNAESDTA 276 (511) T ss_pred EEeCC--cEE---EEEecCCccccc---cccccccccCCCCccceEEecCCC----CCCCchhhhHHHHHHHHHHHHHHH Confidence 66553 233 344332221111 112234567999999999875432 457789999999999999999999 Q ss_pred HHHHHhcCceeEeeCCCCccchhc---cCcceeeec-----CcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 309 EMAFVAGQPTAFFTGLTKDWVEDV---FKDFKVHLG-----SRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM 379 (535) Q Consensus 309 ~~l~~~~~P~~~~~G~~~~~~~d~---~~~~~i~iG-----~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l 379 (535) ..+++.+.|+++++|.......+. .....+.+. .........+++++|+...-..-. ...++.+.+.|..+ T Consensus 277 ~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~ 356 (511) T protein:vir:99 277 NYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMF 356 (511) T ss_pred HHHHHhhchhhhhccCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 999999999999999643322211 111111111 111222345678889886543222 35677888877766 Q ss_pred hhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN----DETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~----~~~~~v~~n~df~~~~~d 452 (535) +.-+- ...+++.|+.+..............+...++.+|++++++++.+++.... ..-..+++.+....+... T Consensus 357 s~~P~~~~~~~~gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~i~f~~~~p~n~ 436 (511) T protein:vir:99 357 TNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDVSKDFNTVRYVYNRNLPKSL 436 (511) T ss_pred hCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCCCcCH Confidence 54331 22235666666666666777778888889999999999999998753211 111234555555555556 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcc-----cCCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKT-----AAAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 527 (535) ++.++++.++. |.||++|+++.| +..++.++|++||++|-.... ...+..++...+.+++.. ..+ T Consensus 437 ~e~~~~~~kl~--GiiS~et~l~~l------~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 506 (511) T protein:vir:99 437 IEELKAYIDSG--GKISQTTLMSLF------SFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDST--KDS 506 (511) T ss_pred HHHHHHHHHHh--ccCCHHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCC--cCc Confidence 78888888884 899999998754 222346777888877643221 111112221122222211 222 Q ss_pred CCCCC Q lcl|Aclame:pro 528 GGGNQ 532 (535) Q Consensus 528 ~~~~~ 532 (535) ....+ T Consensus 507 ~d~~e 511 (511) T protein:vir:99 507 IDKKE 511 (511) T ss_pred ccccC Confidence 22222 No 45 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=100.00 E-value=1.6e-29 Score=178.41 Aligned_cols=475 Identities=8% Similarity=-0.016 Sum_probs=272.9 Q ss_pred CCcchhh-hhhhhh-cceecCCCCCCCCcccccCCCCCccCH-------H-----HHHHHHHHHHHHHHhcChHHHHHHH Q lcl|Aclame:pro 1 MARKRTT-IRRDVQ-SKVLIPPQAPPTSGLGPSLPNVGYQRV-------E-----FGEMLPKWRKIMDCLSGQEAIKAKR 66 (535) Q Consensus 1 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~M~~v~~~hp-------~-----y~~~~~~w~~i~d~~~G~~~~~~~g 66 (535) |..-|.- .+-|+- -.+.+ -|..+.+.+.|++.+.--. . ...+.++++++.+.|.|...+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~YY~g~~~i~~-- 75 (512) T protein:vir:97 1 MLKANEFETDTDLRENRNYL---FNDEANVVYTYDGTESDLLQNINEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLV-- 75 (512) T ss_pred CccceeccCceeeeeCceee---eccccccccccCchhhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccCcccc-- Confidence 4433310 011111 11121 3566778877875443222 1 12346778888888888654311 Q ss_pred hhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHH Q lcl|Aclame:pro 67 EEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKAL 145 (535) Q Consensus 67 ~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~ 145 (535) -+. ... . .|+.. .| +-.|+.+.+|+..+|++|.++++++.. +.....++++-.. ++++.....++ T Consensus 76 ---~~~---~~~-~----~~~~~-~k-i~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~ 141 (512) T protein:vir:97 76 ---ELT---RRK-E----EYMAD-NR-VAHDYASYISDFINGYFLGNPIQCQDDDKDVLEAIEAFNDL-NDVESHNRSLG 141 (512) T ss_pred ---ccC---ccc-c----cccCc-ce-eecchHHHHHHHHhhhhcccCceeccCChHHHHHHHHHHhh-cCHHHHHHHHH Confidence 111 000 0 12111 13 236999999999999999999999643 2333444444322 68999999999 Q ss_pred HHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 146 GYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 146 ~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) +.++.+|++|++|..+..+ +|-+..++|.+++-.- +.....+.+..|++.+ ....++...+.+. T Consensus 142 ~~~~i~G~ay~~vy~ded~-------------~~~i~~~~p~~~~~iy-d~~~~~~~~~~vr~~~--~~~~~~~~~~~~~ 205 (512) T protein:vir:97 142 LDLSIYGKAYELMIRNQDD-------------ETRLYKSDAMSTFVIY-DNTIERNSIAGVRYLR--TKPIDKTDEDEVF 205 (512) T ss_pred HHHHhcCeEEEEEEeCCCC-------------ceEEEEEcccceEEEE-cCCCCCceEEEEEEEE--eeeccccccceEE Confidence 9999999999999765443 3889999999987642 2222223344344433 2222222334455 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+.+++.+ ..| .|+.+..+... ..........|+|+.||||.+... ..+.+.+.++..|..++.+..| T Consensus 206 ~~~vyt~~--~i~---~~~~~~~~~~~---~~~~~~~~~~~~~g~vPvv~~~nn----~~~~gd~e~v~~liDa~d~~~S 273 (512) T protein:vir:97 206 TVDLFTSH--GVY---RYLTSRTNGLK---LTPRENGFESHSFERMPITEFSNN----ERRKGDYEKVITLIDLYDNAES 273 (512) T ss_pred EEEEEeCC--cEE---EEEecCCCccc---ccccccccccccCcccceEeecCC----CCCCCchhhhHHHHHHHHHHHH Confidence 55566543 233 34433222111 112233456799999999987542 2356778999999999999999 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchhccC---cceee------ecCcccccCCCCCccceeecCcchh-HHHHHHHHHHH Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVEDVFK---DFKVH------LGSRAIIPLPQGATAGILQITPNSV-PFEAMTHKESQ 375 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d~~~---~~~i~------iG~~~~~~lp~~~~~~~~e~~~~~l-~~~~l~~~e~q 375 (535) ++...+.+.+.|+++++|....+..+... ...+. .+.......+.+++++|+...-..- ....++.+.+. T Consensus 274 ~~~~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~ 353 (512) T protein:vir:97 274 DTANYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYKDRLNSD 353 (512) T ss_pred HHHHHHHHhcCceeeeecCccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHHHHHHHH Confidence 99999999999999999965433222111 11111 1111122234567888988653322 23567788887 Q ss_pred HHHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CceeEEEEecccCC Q lcl|Aclame:pro 376 MIAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN----DETVEYNLNTDFPA 448 (535) Q Consensus 376 m~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~----~~~~~v~~n~df~~ 448 (535) |...+.-+- ..-+++.|+.+..............+...++.+|++++++++.+++.... .+-..+++.+.... T Consensus 354 I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~~~f~~~~ 433 (512) T protein:vir:97 354 IHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNL 433 (512) T ss_pred HHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccceEEeCCCC Confidence 776654332 22235555555555666677778888888999999999999988653211 11112444444444 Q ss_pred ccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc-----CCCcCCCCCCCccccccc Q lcl|Aclame:pro 449 ARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA-----AAGKVGDAASGGTNKAKL 523 (535) Q Consensus 449 ~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~-----~~~~~~~~~~~~~~~~~~ 523 (535) ....++.++++.++ .|.||+||+++.| +.+ .+.++|.+||.+|...... ....+++...+.++ T Consensus 434 p~~~~e~~~~~~kl--~giiS~et~~~~l---~~v---~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~---- 501 (512) T protein:vir:97 434 PKSLIEELKAYIDS--GGKISQTTLMSLF---SFF---QDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD---- 501 (512) T ss_pred CcCHHHHHHHHHHH--hccCchHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCC---- Confidence 55567888988888 4899999988654 222 3466777777776433211 11111111111111 Q ss_pred ccccCCCCCCCC Q lcl|Aclame:pro 524 NNGNGGGNQAGN 535 (535) Q Consensus 524 ~~~~~~~~~~~~ 535 (535) +.+.-.+...- T Consensus 502 -~~~~~~~~~~~ 512 (512) T protein:vir:97 502 -DDTKDTVDKKE 512 (512) T ss_pred -CCccccccccC Confidence 11111111111 No 46 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=100.00 E-value=3.1e-29 Score=176.88 Aligned_cols=477 Identities=8% Similarity=-0.026 Sum_probs=278.0 Q ss_pred CcchhhhhhhhhcceecCCCCCCCCcccccCCCCCcc---CHH----H-----HHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 2 ARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQ---RVE----F-----GEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~---hp~----y-----~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) .-|-..+++++.+..-+-----+.+-..+.|++...- .++ + ...+++++++.+.|.|...+-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~----- 75 (511) T protein:vir:10 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKCIEHHMDYQRPRLKVLSDYYEGKTKNLV----- 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhcCCccCchhhhhcccCHHHHHHHHHHHHHhhHHHHHHHHHHhcccCcccc----- Confidence 3344556666655443333334456666677632211 111 1 1235778888899988654311 Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) +.. .... .++.. .|.+ .|+++.+++.++|++|.++|+++.. +.....+.++-.. ++++.....+++.+ T Consensus 76 --~~~-~~~~-----~~~~~-~ki~-~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~~~~ 144 (511) T protein:vir:10 76 --ELT-RRKE-----EYMAD-NRVA-HDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDL-NDVESHNRSLGLDL 144 (511) T ss_pred --ccC-cccc-----cccCc-ceee-cchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhh-cCHHHHHHHHHHHH Confidence 111 1110 12221 1333 6999999999999999999999754 3344444444333 68999999999999 Q ss_pred HhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 149 l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) +.+|++|++|..+..+ +|.+..++|.+++-.--+.+ ..+.+..|++.++ ...+....+.+..+. T Consensus 145 ~i~G~ay~~vy~dedg-------------~~~i~~~~p~~~~~vydd~~-~~~~~~~vr~~~~--~~~d~~~~~~~~~~~ 208 (511) T protein:vir:10 145 SIYGKAYEIMIRNQDD-------------ETRLYKSDAMSTFVIYDNTI-ERNSIAGVRYLRT--KPIDKTDEDEVFTVD 208 (511) T ss_pred HhcCeeEEEEEeCCCC-------------ceEEEEEccceeEEEEcCCC-CCceEEEEEEEEe--eecccCccceEEEEE Confidence 9999999999765443 37888999999875432222 2334444444332 222222334455555 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) +++.+ +.| .|+.+..+... ..........|+++.||||.+.... .+.+.+.++..|-.++....|++. T Consensus 209 iyt~~--~i~---~~~~~~~~~~~---~~~~~~~~~~~~~~~vPvv~f~nn~----~g~gd~e~v~~liDa~d~~~S~~~ 276 (511) T protein:vir:10 209 LFTSH--GVY---RYLTSRTNGLK---LTPRENGFESHSFERMPITEFSNNE----RRKGDYEKVITLIDLYDNAESDTA 276 (511) T ss_pred EEeCC--cEE---EEEecCCCccc---ccccccccccccCcceeEEEecCCC----CCCCchhhhHHHHHHHHHHHHHHH Confidence 55543 233 33333222111 1122234567999999999875432 356778899999999999999999 Q ss_pred HHHHHhcCceeEeeCCCCccchhcc---CcceeeecC-----cccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 309 EMAFVAGQPTAFFTGLTKDWVEDVF---KDFKVHLGS-----RAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM 379 (535) Q Consensus 309 ~~l~~~~~P~~~~~G~~~~~~~d~~---~~~~i~iG~-----~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l 379 (535) ..++..++|+++++|.......+.. ....+.+.+ ........+++++|+...-..-. ...++.+.+.|..+ T Consensus 277 ~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~L~~~I~~~ 356 (511) T protein:vir:10 277 NYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMF 356 (511) T ss_pred HHHHHhhCceeeeeccccCCchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 9999999999999996543322211 111111111 11122344678888876543322 35677777777665 Q ss_pred hhhh---hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GANL---LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN----DETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~~---l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~----~~~~~v~~n~df~~~~~d 452 (535) +.-+ ....+++.|+.+..................++.+|++++++++.+++.... ..-..+++.+....+... T Consensus 357 s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~~i~i~f~~~~p~d~ 436 (511) T protein:vir:10 357 TNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSL 436 (511) T ss_pred hCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccceeeEEeCCCCCcCH Confidence 5332 122235666666566667777778888889999999999999888753211 111234554544445556 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc-----CCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA-----AAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 527 (535) ++.++++.++. |.||++|+++.| +.+ .+.++|++||.+|-..... .....++...+.+++...++.. T Consensus 437 ~~~~~~~~kl~--G~iS~et~~~~l---~~v---~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (511) T protein:vir:10 437 IEELKAYIDSG--GKISQTTLMSLF---SFF---QDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDTVD 508 (511) T ss_pred HHHHHHHHHHh--ccCcHHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCCcccCccc Confidence 78899988884 899999998654 222 3456777777766332211 1112222212222211111111 Q ss_pred CCC Q lcl|Aclame:pro 528 GGG 530 (535) Q Consensus 528 ~~~ 530 (535) -.. T Consensus 509 ~~~ 511 (511) T protein:vir:10 509 KKE 511 (511) T ss_pred ccC Confidence 111 No 47 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=100.00 E-value=2e-29 Score=177.88 Aligned_cols=477 Identities=8% Similarity=-0.025 Sum_probs=273.4 Q ss_pred CcchhhhhhhhhcceecCCCCCCCCcccccCCCCCcc---CH----HH-----HHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 2 ARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQ---RV----EF-----GEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~---hp----~y-----~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) .-|-..+|+++-...-|-----+.+-..+.|+....- .+ ++ ....++|+++.+.|.|...+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~----- 75 (511) T protein:vir:96 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLV----- 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCcccc----- Confidence 2334444554443332222233445555666632221 11 11 1235678888888888654311 Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) +.. .... .++.. .|.+ .|+.+.+++..+|++|.++|+++.. +.....+.++-.. ++++.+...+++.+ T Consensus 76 --~~~-~~~~-----~~~~~-~ki~-~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~~~~ 144 (511) T protein:vir:96 76 --ELT-RRKE-----EYMAD-NRVA-HDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDL-NDVESHNRSLGLDL 144 (511) T ss_pred --ccC-cccc-----cccCc-ceee-cchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhh-cChhHHHHHHHHHH Confidence 111 0000 11111 1323 6999999999999999999999754 3343444444333 68999999999999 Q ss_pred HhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 149 l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) +.+|++|++|..+..+ +|.+..++|.+++-.--+.+. .+.+..|++. .....++...+.+..+. T Consensus 145 ~~~G~a~~~vy~d~dg-------------~~~i~~~~p~~~~~v~dd~~~-~~~~~~vr~~--~~~~~~~~~~~~~~~~~ 208 (511) T protein:vir:96 145 SIYGKAYELMIRNQDD-------------ETRLYKSDAMSTFIIYDNTVE-RNSIAGVRYL--RTKPIDKTDEDEVFTVD 208 (511) T ss_pred HhcCeeEEEEEeCCCC-------------ceEEEEEcccceEEEEcCCCC-CceEEEEEEE--EeeeccccccceEEEEE Confidence 9999999999765443 488999999998654222221 2334434332 22222233334555566 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) +++.+ +.| .|+.+..+... ..........|+++.||||.+.... .+.+.+.++..|-.++....|++. T Consensus 209 vyt~~--~i~---~~~~~~~~~~~---~~~~~~~~~~~~~g~vPvv~~~n~~----~g~gd~e~v~~liDa~~~~~S~~~ 276 (511) T protein:vir:96 209 LFTSH--GVY---RYLTNRTNGLK---LTPRENSFESHSFERMPITEFSNNE----RRKGDYEKVITLIDLYDNAESDTA 276 (511) T ss_pred EEeCC--cEE---EEEecCCCccc---ccccccccccCcCcccceEEecCCC----CCCCchhhhHHHHHHHHHHHHHHH Confidence 66653 233 34333222111 1112234567999999999875432 356778899999999999999999 Q ss_pred HHHHHhcCceeEeeCCCCccchhcc---CcceeeecCcc-----cccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 309 EMAFVAGQPTAFFTGLTKDWVEDVF---KDFKVHLGSRA-----IIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM 379 (535) Q Consensus 309 ~~l~~~~~P~~~~~G~~~~~~~d~~---~~~~i~iG~~~-----~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l 379 (535) ..+++.+.|++|++|.......+.. ....+.+.... ......+++++|+...-..-. ...++.+.++|..+ T Consensus 277 ~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~ 356 (511) T protein:vir:96 277 NYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMF 356 (511) T ss_pred HHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 9999999999999996433322111 11112221111 112234677888876543222 35677777777666 Q ss_pred hhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN----DETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~----~~~~~v~~n~df~~~~~d 452 (535) +.-.- ...+++.|+.+..................++.+|++++++++.+++.... ..-..+++.+........ T Consensus 357 s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~ 436 (511) T protein:vir:96 357 TNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSL 436 (511) T ss_pred hCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCH Confidence 54321 22235566666566666677777888888999999999999998753211 111234444444445556 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc-----CCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA-----AAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 527 (535) .+.++++.++. |.||++|+++.| . ..++.++|++||.+|-..... ....+++.....++....+. T Consensus 437 ~e~~d~~~kl~--G~iS~et~l~~l---~---~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 506 (511) T protein:vir:96 437 IEELKAYIDSG--GKISQTTLMSLF---S---FFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDT-- 506 (511) T ss_pred HHHHHHHHHHh--ccCChHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCccCc-- Confidence 78899988885 899999988654 2 223467777888776433211 11111111111111111111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 528 GGGNQAGN 535 (535) Q Consensus 528 ~~~~~~~~ 535 (535) ++.+- T Consensus 507 ---~~e~~ 511 (511) T protein:vir:96 507 ---VDKKE 511 (511) T ss_pred ---ccccC Confidence 11111 No 48 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=100.00 E-value=2e-29 Score=177.88 Aligned_cols=477 Identities=8% Similarity=-0.025 Sum_probs=273.4 Q ss_pred CcchhhhhhhhhcceecCCCCCCCCcccccCCCCCcc---CH----HH-----HHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 2 ARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQ---RV----EF-----GEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~---hp----~y-----~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) .-|-..+|+++-...-|-----+.+-..+.|+....- .+ ++ ....++|+++.+.|.|...+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~il~----- 75 (511) T protein:vir:78 1 MLKVNEFETDTDLRGNINYLFNDEANVVYTYDGTESDLLQNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLV----- 75 (511) T ss_pred CccccchhhhhhhhhhhhhhhhhhhCCcccccchhhhhhcCHHHHHHHHHHHHHhhhHHHHHHHHHhhccCcccc----- Confidence 2334444554443332222233445555666632221 11 11 1235678888888888654311 Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) +.. .... .++.. .|.+ .|+.+.+++..+|++|.++|+++.. +.....+.++-.. ++++.+...+++.+ T Consensus 76 --~~~-~~~~-----~~~~~-~ki~-~n~~k~Iv~~~~~yl~g~p~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~~~~ 144 (511) T protein:vir:78 76 --ELT-RRKE-----EYMAD-NRVA-HDYASYISDFINGYFLGNPIQYQDDDKDVLEAIEAFNDL-NDVESHNRSLGLDL 144 (511) T ss_pred --ccC-cccc-----cccCc-ceee-cchHHHHHHHHhhhhcccCceeecCchHHHHHHHHHHhh-cChhHHHHHHHHHH Confidence 111 0000 11111 1323 6999999999999999999999754 3343444444333 68999999999999 Q ss_pred HhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 149 l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) +.+|++|++|..+..+ +|.+..++|.+++-.--+.+. .+.+..|++. .....++...+.+..+. T Consensus 145 ~~~G~a~~~vy~d~dg-------------~~~i~~~~p~~~~~v~dd~~~-~~~~~~vr~~--~~~~~~~~~~~~~~~~~ 208 (511) T protein:vir:78 145 SIYGKAYELMIRNQDD-------------ETRLYKSDAMSTFIIYDNTVE-RNSIAGVRYL--RTKPIDKTDEDEVFTVD 208 (511) T ss_pred HhcCeeEEEEEeCCCC-------------ceEEEEEcccceEEEEcCCCC-CceEEEEEEE--EeeeccccccceEEEEE Confidence 9999999999765443 488999999998654222221 2334434332 22222233334555566 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) +++.+ +.| .|+.+..+... ..........|+++.||||.+.... .+.+.+.++..|-.++....|++. T Consensus 209 vyt~~--~i~---~~~~~~~~~~~---~~~~~~~~~~~~~g~vPvv~~~n~~----~g~gd~e~v~~liDa~~~~~S~~~ 276 (511) T protein:vir:78 209 LFTSH--GVY---RYLTNRTNGLK---LTPRENSFESHSFERMPITEFSNNE----RRKGDYEKVITLIDLYDNAESDTA 276 (511) T ss_pred EEeCC--cEE---EEEecCCCccc---ccccccccccCcCcccceEEecCCC----CCCCchhhhHHHHHHHHHHHHHHH Confidence 66653 233 34333222111 1112234567999999999875432 356778899999999999999999 Q ss_pred HHHHHhcCceeEeeCCCCccchhcc---CcceeeecCcc-----cccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 309 EMAFVAGQPTAFFTGLTKDWVEDVF---KDFKVHLGSRA-----IIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM 379 (535) Q Consensus 309 ~~l~~~~~P~~~~~G~~~~~~~d~~---~~~~i~iG~~~-----~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l 379 (535) ..+++.+.|++|++|.......+.. ....+.+.... ......+++++|+...-..-. ...++.+.++|..+ T Consensus 277 ~~~~~~~~~~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~~L~~~I~~~ 356 (511) T protein:vir:78 277 NYMSDLNDAMLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKDRLNSDIHMF 356 (511) T ss_pred HHHHHhhcchhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 9999999999999996433322111 11112221111 112234677888876543222 35677777777666 Q ss_pred hhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN----DETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~----~~~~~v~~n~df~~~~~d 452 (535) +.-.- ...+++.|+.+..................++.+|++++++++.+++.... ..-..+++.+........ T Consensus 357 s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~~i~~~f~~~~p~n~ 436 (511) T protein:vir:78 357 TNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFNTVRYVYNRNLPKSL 436 (511) T ss_pred hCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceEEeCCCCCcCH Confidence 54321 22235566666566666677777888888999999999999998753211 111234444444445556 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc-----CCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA-----AAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 527 (535) .+.++++.++. |.||++|+++.| . ..++.++|++||.+|-..... ....+++.....++....+. T Consensus 437 ~e~~d~~~kl~--G~iS~et~l~~l---~---~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 506 (511) T protein:vir:78 437 IEELKAYIDSG--GKISQTTLMSLF---S---FFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDTKDT-- 506 (511) T ss_pred HHHHHHHHHHh--ccCChHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCccCc-- Confidence 78899988885 899999988654 2 223467777888776433211 11111111111111111111 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 528 GGGNQAGN 535 (535) Q Consensus 528 ~~~~~~~~ 535 (535) ++.+- T Consensus 507 ---~~e~~ 511 (511) T protein:vir:78 507 ---VDKKE 511 (511) T ss_pred ---ccccC Confidence 11111 No 49 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=100.00 E-value=2.5e-29 Score=177.42 Aligned_cols=447 Identities=10% Similarity=0.014 Sum_probs=260.0 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCC--------CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPN--------VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPM 72 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~--------v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~ 72 (535) |+.. .-|-..+..-.++-++-+ +..-.-.+....++.++..+.|.|...+......+..+ T Consensus 1 ~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i~~~~~~~~~~ 68 (468) T protein:vir:96 1 MIDI------------FWPNEKPYHERVVEQIKPQYETQEEMILRLITKHKENVEDITVGERYYNHQPDVLFNAPKRNVK 68 (468) T ss_pred Cccc------------cCCcCceeehheeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccccc Confidence 3322 111111222222222211 11112234456677788888888876543221111111 Q ss_pred CCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 73 PSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGF 151 (535) Q Consensus 73 ~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~ 151 (535) .. ...++... | .-.|+.+.+++..+|++|.++|+++.++. ....+.++- +++++.....+++.++.+ T Consensus 69 ~~--------~~~~~~~~-k-i~~n~~~~Iv~~~~~~l~g~p~~~~~~d~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~ 136 (468) T protein:vir:96 69 GE--------IDPFKPDW-R-MYTNYHQNLVDQKVAYAVANPVTYGTEDEKSLKTIQEVL--NHKWDDKLVDILTAASNK 136 (468) T ss_pred cc--------cccccccc-c-cccchHHHHHHHHHhhhccCCceeccCChHHHHHHHHHH--hcCHHHHHHHHHHHHhhc Confidence 10 00122111 2 22699999999999999999999976532 233333332 257888899999999999 Q ss_pred CcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEe Q lcl|Aclame:pro 152 GRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQ 231 (535) Q Consensus 152 G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~ 231 (535) |++|++|..+..+ +|.+..++|.+++-.--+... ..+..+ ++.+..+. . +.+-+++ T Consensus 137 G~~~~~v~~d~~~-------------~~~i~~~~p~~~~~v~~~~~~--~~~~~~-ir~~~~~~-~-------~~~~~~~ 192 (468) T protein:vir:96 137 GVEWIQPYVDEQG-------------EFKTFRVPAEQAIPIWTNKER--DELKAF-IRLYELDG-G-------ERVEYWT 192 (468) T ss_pred CeEEEEEEEcCCC-------------ceEEEEEcccceEEEEcCCCC--CceEEE-EEEEEecC-c-------eEEEEEe Confidence 9999999876544 388999999998643111111 233332 33332221 1 1223333 Q ss_pred ecCCceEEEEEEeeeccC------CccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 232 LNAEGNYQVERWRRETQE------EMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 232 l~~~g~y~v~~w~~~~~~------~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+ +. ..|+..... ........+..+....|+++.||||.+.+.. .+.+.|.++..|..++....| T Consensus 193 ~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~n~~----~g~sd~e~v~~liDa~d~~~S 263 (468) T protein:vir:96 193 AN--DV---TFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFKNNP----QEVSDLFMYKTIIDAMDKRLS 263 (468) T ss_pred CC--eE---EEEEEcCCceeecccccccccccceeeccccccCCcccEEEecCCC----CCCCchHHHHHHHHHHHHHHH Confidence 22 11 112211110 0111112233445567999999999885432 356778999999999999999 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCC--CCCccceeecCcchhH-HHHHHHHHHHHHHHhhh Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP--QGATAGILQITPNSVP-FEAMTHKESQMIAMGAN 382 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp--~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~ 382 (535) ++...+.+.++|+++++|.+.++..+... .+-...++.++ ++++++|+..+...-. ...++.+.+++..++.- T Consensus 264 ~~~~~~~~~~~p~lv~~g~~~~~~~~~~~----~~~~~~~i~~~~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~ 339 (468) T protein:vir:96 264 DTQNTFDEATELIYVLKGYEGEDLEEFMY----NLKYYKAINVDGDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQG 339 (468) T ss_pred HHHHHHHHhcCceeeeecCCccccchhhh----hhhcCceEEecCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCc Confidence 99999999999999999987654322211 11122344444 3567889987764433 35677788887776543 Q ss_pred h--hccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHH Q lcl|Aclame:pro 383 L--LVKS-GGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAEL 459 (535) Q Consensus 383 ~--l~~~-~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al 459 (535) + ...+ +++.|+.+..............+...+++++++++++++.+.|...+...+. +.+.+..+..+.+.++.+ T Consensus 340 p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~~d~~~i~--i~f~~~~p~d~~e~a~~~ 417 (468) T protein:vir:96 340 VDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFYKLSIKVQDVE--ITFNFNVMVNELEQSQIG 417 (468) T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceee--EEecCCCCcCHHHHHHHH Confidence 2 2222 3456666556666777888889999999999999999999998765544444 444445444455666654 Q ss_pred HHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 460 ILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 460 ~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) .++|.||++|+++.| +..++.++|.+||.+|-..........++ +.+. .|| T Consensus 418 ---~~~g~iS~et~i~~l------~~v~D~~~E~~ri~~E~~~~~~~~~~~~~----~~~~---------~~~ 468 (468) T protein:vir:96 418 ---VNSQYLSKETVVTNH------PWVDDPVAEMERIDQEELALPSIEEGLNG----KENN---------EPT 468 (468) T ss_pred ---HhcCCCchHHHHHhC------CCCCCHHHHHHHHHHHHHHHHHHhhccCC----CCCC---------CCC Confidence 457999999987543 22234678888887764433222211111 1111 111 No 50 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=100.00 E-value=1.3e-30 Score=184.45 Aligned_cols=400 Identities=11% Similarity=0.015 Sum_probs=257.1 Q ss_pred CC--CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhh Q lcl|Aclame:pro 32 LP--NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQ 109 (535) Q Consensus 32 M~--~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~ 109 (535) |- .|++--..+....+++.++.+.|.|...++ |||.. -...|+.+. ++ ..|+++.+|++++++ T Consensus 1 m~~~~i~~L~~~~~~~~~r~~~~~~yy~g~~~~~-----~~~~~--------~p~~~~~~~-~~-v~nw~~~~Vd~~a~r 65 (422) T protein:vir:97 1 MNYMGMGYLRRKLALFKTGVDKRYRYYAMDDRDD-----TRSIV--------MPNNVREMY-RS-VLEWTAKGVDSLADR 65 (422) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh-----hcCcc--------ccHHHHHHH-Hh-hcchhHHHHHHHHhc Confidence 76 488888899999999999999999987653 55531 112355433 34 469999999999999 Q ss_pred hhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhh Q lcl|Aclame:pro 110 VFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTS 188 (535) Q Consensus 110 lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~ 188 (535) ++-..-+ .+ ..+..+|+. |+|+....++++.+|.+|+||++|.....++ +|.++.++|++ T Consensus 66 l~~~Gf~--~~d~~l~~~w~~-----N~ld~~~~~~~~~al~~G~sf~~v~~~~~~~------------~p~i~~~sp~~ 126 (422) T protein:vir:97 66 IIFREFT--NDDFNAWEIFKA-----NNPDIFFDTAIQSALIASCCFVYIMPGAEDG------------LPKMQVIEASK 126 (422) T ss_pred cccceee--CCchhHHHHHHh-----cChHHHHHHHHHHHHHhcceeEEEeeCCCCC------------eeEEEEechhh Confidence 9765533 33 345555543 7899999999999999999999995322111 48999999999 Q ss_pred hhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCcc Q lcl|Aclame:pro 189 IINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPF 268 (535) Q Consensus 189 Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l 268 (535) ++..- +...+ .+..... +.+.++ -+.. + ..++.. ++. +..++. ++.. ....|++ T Consensus 127 ~~~i~-D~~~~--~~~~a~~---~~~~~~-~~~~--~-~~~~~~--~~~--~~~~~~---~~~~---------~~~~~~~ 180 (422) T protein:vir:97 127 ATGIL-DPTTF--LLTEGYA---ILESDS-NGNP--T-LEAYFT--DKD--IWYYPK---KGKP---------YNIKNPT 180 (422) T ss_pred EEEEE-eCCCC--cceeeEE---EEEecC-CCcE--E-EEEEEc--Cce--EEEEcC---CCcc---------ccccCCC Confidence 98764 44333 2322211 111111 1111 1 112222 111 111111 1111 1235899 Q ss_pred ceeEEEEec-cCCCcCCCCcchH-HHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccc Q lcl|Aclame:pro 269 KEIPFQFIG-PLDNNADIDHPPL-LDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAII 346 (535) Q Consensus 269 ~~IP~v~~~-~~~~~~~~~~ppL-~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~ 346 (535) |+||+|+|. ..+.....|.+.+ .++..|..++.+..++...+.+|.++|++|+.|++.+.. ....+......+| T Consensus 181 g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~----~~~~~~~~~~~i~ 256 (422) T protein:vir:97 181 GHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVTAEFYSFPQKYVLGMDPDAK----PMEKWRATVSTLL 256 (422) T ss_pred CCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccCcccc----cCchhhhhhhhhh Confidence 999999764 4455555778888 579999999999999999999999999999999865432 2234555556888 Q ss_pred cCCCCC---ccceeecCcchhH--HHHHHHHHHHHHHHh---hhhhcccccccc-hHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 347 PLPQGA---TAGILQITPNSVP--FEAMTHKESQMIAMG---ANLLVKSGGNRT-FGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 347 ~lp~~~---~~~~~e~~~~~l~--~~~l~~~e~qm~~lg---a~~l~~~~~~~t-a~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) .+|.+. .+++-|+.+.++. .+.++.+..++.... ...+...+.|.+ +.+..............+...+..+ T Consensus 257 ~~~~de~~~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~ 336 (422) T protein:vir:97 257 EISKDEDGDKPTVGQFTTASMAPFMEHLKMYASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAGRKAQRSFSSG 336 (422) T ss_pred ccCCCCCCCcceeeecCCCChhHHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 888644 3567778777764 366777777776543 333444455544 4444556666677788888899999 Q ss_pred HHHHHHHHHHHcCCCCCC--ceeEEEEeccc---CCccCCHHHHHHHHHHHhc--CCCCHHHHHHHHHhCCCCCccCCHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVND--ETVEYNLNTDF---PAARLTPNERAELILEWQQ--GAITFKEMRAGLRRAGVASEDDAKA 490 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~--~~~~v~~n~df---~~~~~d~~~~~al~~l~~~--G~is~et~~~~L~r~gvl~~~~~~e 490 (535) |++++|++....+..... .-..+.+.|.. ......++.++++.|++++ |..++++.++.| |+- + .+ T Consensus 337 l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~l---g~~-~---~~ 409 (422) T protein:vir:97 337 FLNVAYIAVCLRDEFPYLRNQFMDTVIKWEPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLT---GVK-G---AD 409 (422) T ss_pred HHHHHHHHHHHhcCCcccchhhccceEEEccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHc---CCC-c---hh Confidence 999999999887743211 11122333321 1223357789999999999 778999888765 652 1 23 Q ss_pred HHHHHHHhc-hhh Q lcl|Aclame:pro 491 ETEGKATVE-FIA 502 (535) Q Consensus 491 ee~~~i~~e-~~~ 502 (535) ++..+++.+ +.+ T Consensus 410 ~~~~~~~~~~~d~ 422 (422) T protein:vir:97 410 KPIPAITEVTTDG 422 (422) T ss_pred HHHHHHHhhhccC Confidence 333344332 111 No 51 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=100.00 E-value=3.4e-29 Score=176.66 Aligned_cols=457 Identities=10% Similarity=0.019 Sum_probs=261.2 Q ss_pred hhcceecCCCCCCCCcccccCC----CCC----ccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhH Q lcl|Aclame:pro 12 VQSKVLIPPQAPPTSGLGPSLP----NVG----YQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQR 83 (535) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~M~----~v~----~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~ 83 (535) .--+|-.|-..|-+.=+-=.+. ++. .---.+....++.+.+.+.|.|.+.+.... .|. .... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~-~~~---------~~~~ 70 (474) T protein:vir:95 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQA-YKQ---------DLHG 70 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccc-chh---------hhcc Confidence 2222333332222222211121 111 111123445667777788888876543211 110 0000 Q ss_pred HHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecC Q lcl|Aclame:pro 84 RRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPN 162 (535) Q Consensus 84 ~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~ 162 (535) ..++.+-..-+-.|+.+.+++..+|++|.++|+++..+. ....++++- .++++.....+++.++.+|++|++|..+. T Consensus 71 ~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~--~n~~~~~~~~l~~~~~~~G~~~~~~~~d~ 148 (474) T protein:vir:95 71 NIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQVL--DTRWDNKLIDILTAASNKGIDWLQVYINE 148 (474) T ss_pred cccccccccccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHHHH--hccHHHHHHHHHHHHhhCCeEEEEeeeCC Confidence 001111111123699999999999999999999975433 333344442 36799999999999999999999998765 Q ss_pred CCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEE Q lcl|Aclame:pro 163 VGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVER 242 (535) Q Consensus 163 ~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~ 242 (535) .+ +|-+..++|++++-.-.+.. ...+..+ +|... . +.++.+.+++.+. +.. T Consensus 149 ~~-------------~~~i~~~~p~~~~~v~d~~~--~~~~~a~-ir~~~-~-------~~~~~~~vy~~~~-----i~~ 199 (474) T protein:vir:95 149 DG-------------ELKLFRVPAEQAIPIWTDKE--REQLNAF-IRIFT-F-------NGETKVEYWTAET-----VTY 199 (474) T ss_pred CC-------------ceEEEEEcccceEEEEcCCC--CCceEEE-EEEEe-e-------cCeeEEEEEeCCe-----EEE Confidence 44 37889999999863321111 1233332 33322 1 1233455555432 222 Q ss_pred EeeeccCC--ccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeE Q lcl|Aclame:pro 243 WRRETQEE--MYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAF 320 (535) Q Consensus 243 w~~~~~~~--~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~ 320 (535) |+...... .......+..+....|+++.||||.+... ..+.+.|.++..|..++....|++...+.+.++|+++ T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn----~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv 275 (474) T protein:vir:95 200 YVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNN----PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYI 275 (474) T ss_pred EEEcCCceeeccccccccccCcccccCCCccceEEecCC----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhh Confidence 32222111 11111223334556689999999988543 2356778999999999999999999999999999999 Q ss_pred eeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh--hccc-ccccchHHH Q lcl|Aclame:pro 321 FTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANL--LVKS-GGNRTFGEA 396 (535) Q Consensus 321 ~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l~~~-~~~~ta~~a 396 (535) ++|+..+...+.. -.+....++.++.+++++|+..+...-. ...++.+.++|..++.-+ ...+ +++.|+.+. T Consensus 276 ~~g~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al 351 (474) T protein:vir:95 276 LRGYEGEDLSEFM----EGLKYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIAL 351 (474) T ss_pred hcCCCcccccchh----hhhhccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccccccHHHHH Confidence 9998765432221 2233445677888999999987654433 456778888877766433 1122 234444444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHH Q lcl|Aclame:pro 397 QQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAG 476 (535) Q Consensus 397 ~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~ 476 (535) .............+...+..++.+.+++++.+.|...+...+++. +......-+.+.++.+ .++|.||+||++.. T Consensus 352 k~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~--f~~~~p~~~~e~a~~~---~~~giiS~et~~~~ 426 (474) T protein:vir:95 352 KFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEIT--FNFNVMVNDLEQSQIG---AQSQYLSKETLVRH 426 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEE--ecCCCccCHHHHHHHH---HHcCCCChHHHHHh Confidence 444556666677778889999999999999999866555444444 3333334345555543 45799999998754 Q ss_pred HHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCC--CCCCcccccccccccC Q lcl|Aclame:pro 477 LRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGD--AASGGTNKAKLNNGNG 528 (535) Q Consensus 477 L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 528 (535) | + ...+.++|.+||..|-...........+ +.++.++......-+. T Consensus 427 l---p---~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 427 H---P---WVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred C---C---CCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 3 3 2334677777886663322111111111 1111111111111111 No 52 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=100.00 E-value=3.4e-29 Score=176.66 Aligned_cols=457 Identities=10% Similarity=0.019 Sum_probs=261.2 Q ss_pred hhcceecCCCCCCCCcccccCC----CCC----ccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhH Q lcl|Aclame:pro 12 VQSKVLIPPQAPPTSGLGPSLP----NVG----YQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQR 83 (535) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~M~----~v~----~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~ 83 (535) .--+|-.|-..|-+.=+-=.+. ++. .---.+....++.+.+.+.|.|.+.+.... .|. .... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~-~~~---------~~~~ 70 (474) T protein:vir:96 1 MINIIRMPWDKPYGEEVVEQMKPKVETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQA-YKQ---------DLHG 70 (474) T ss_pred CcccccCCCCCCCCcchhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccc-chh---------hhcc Confidence 2222333332222222211121 111 111123445667777788888876543211 110 0000 Q ss_pred HHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecC Q lcl|Aclame:pro 84 RRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPN 162 (535) Q Consensus 84 ~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~ 162 (535) ..++.+-..-+-.|+.+.+++..+|++|.++|+++..+. ....++++- .++++.....+++.++.+|++|++|..+. T Consensus 71 ~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~~~~~~~~l~~~~--~n~~~~~~~~l~~~~~~~G~~~~~~~~d~ 148 (474) T protein:vir:96 71 NIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTYAHDDDKVLDVIHQVL--DTRWDNKLIDILTAASNKGIDWLQVYINE 148 (474) T ss_pred cccccccccccccchHHHHHHhhhhhhcccCceeccCChHHHHHHHHHH--hccHHHHHHHHHHHHhhCCeEEEEeeeCC Confidence 001111111123699999999999999999999975433 333344442 36799999999999999999999998765 Q ss_pred CCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEE Q lcl|Aclame:pro 163 VGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVER 242 (535) Q Consensus 163 ~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~ 242 (535) .+ +|-+..++|++++-.-.+.. ...+..+ +|... . +.++.+.+++.+. +.. T Consensus 149 ~~-------------~~~i~~~~p~~~~~v~d~~~--~~~~~a~-ir~~~-~-------~~~~~~~vy~~~~-----i~~ 199 (474) T protein:vir:96 149 DG-------------ELKLFRVPAEQAIPIWTDKE--REQLNAF-IRIFT-F-------NGETKVEYWTAET-----VTY 199 (474) T ss_pred CC-------------ceEEEEEcccceEEEEcCCC--CCceEEE-EEEEe-e-------cCeeEEEEEeCCe-----EEE Confidence 44 37889999999863321111 1233332 33322 1 1233455555432 222 Q ss_pred EeeeccCC--ccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeE Q lcl|Aclame:pro 243 WRRETQEE--MYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAF 320 (535) Q Consensus 243 w~~~~~~~--~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~ 320 (535) |+...... .......+..+....|+++.||||.+... ..+.+.|.++..|..++....|++...+.+.++|+++ T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn----~~~~~d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv 275 (474) T protein:vir:96 200 YVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNN----PEEVSDIWMYKSFVDAIDKRLSDVQNMFDESVELIYI 275 (474) T ss_pred EEEcCCceeeccccccccccCcccccCCCccceEEecCC----CCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhh Confidence 32222111 11111223334556689999999988543 2356778999999999999999999999999999999 Q ss_pred eeCCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh--hccc-ccccchHHH Q lcl|Aclame:pro 321 FTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANL--LVKS-GGNRTFGEA 396 (535) Q Consensus 321 ~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l~~~-~~~~ta~~a 396 (535) ++|+..+...+.. -.+....++.++.+++++|+..+...-. ...++.+.++|..++.-+ ...+ +++.|+.+. T Consensus 276 ~~g~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al 351 (474) T protein:vir:96 276 LRGYEGEDLSEFM----EGLKYYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYIVEFGQGVDFQTDKFGSATSGIAL 351 (474) T ss_pred hcCCCcccccchh----hhhhccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcCccccccccccHHHHH Confidence 9998765432221 2233445677888999999987654433 456778888877766433 1122 234444444 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHH Q lcl|Aclame:pro 397 QQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAG 476 (535) Q Consensus 397 ~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~ 476 (535) .............+...+..++.+.+++++.+.|...+...+++. +......-+.+.++.+ .++|.||+||++.. T Consensus 352 k~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~~~d~~~i~i~--f~~~~p~~~~e~a~~~---~~~giiS~et~~~~ 426 (474) T protein:vir:96 352 KFLYTNLNLKANKLKNKANVALQELMQFILDFNKIKLDAKEIEIT--FNFNVMVNDLEQSQIG---AQSQYLSKETLVRH 426 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccceeeEE--ecCCCccCHHHHHHHH---HHcCCCChHHHHHh Confidence 444556666677778889999999999999999866555444444 3333334345555543 45799999998754 Q ss_pred HHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCC--CCCCcccccccccccC Q lcl|Aclame:pro 477 LRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGD--AASGGTNKAKLNNGNG 528 (535) Q Consensus 477 L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 528 (535) | + ...+.++|.+||..|-...........+ +.++.++......-+. T Consensus 427 l---p---~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 427 H---P---WVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred C---C---CCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 3 3 2334677777886663322111111111 1111111111111111 No 53 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=100.00 E-value=3.5e-30 Score=182.04 Aligned_cols=439 Identities=12% Similarity=0.046 Sum_probs=265.3 Q ss_pred ecCCCCCCCCcccccCC-CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhcc Q lcl|Aclame:pro 17 LIPPQAPPTSGLGPSLP-NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIF 95 (535) Q Consensus 17 ~~~~~~~~~~~~~~~M~-~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~ 95 (535) +||-+..+-.||-..=- -+..---.+....+++.++.+.|.|...+ .|||.- ....|+.+ ++ . T Consensus 1 ~~~~~~~~~~gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~~-----~~~~~~--------~p~~~r~~--~~-v 64 (474) T protein:vir:81 1 MIQQQTVRIPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRTI-----QYVGTL--------IPPQYFNL--GL-V 64 (474) T ss_pred CcCCCcCcCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCh-----hhcccc--------ccHHHHHH--Hh-h Confidence 88988888777543311 13334456777888889999999998765 355531 11235543 23 4 Q ss_pred chhHHHHHHHHhhhhhcccccc----ccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHH Q lcl|Aclame:pro 96 YNVTARTLDGMMGQVFSRDPIR----QLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLE 171 (535) Q Consensus 96 ~n~~~~tv~~l~G~lF~k~p~~----~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad 171 (535) .|+++.+|++++.++.-..-+. .....+..+|.. |+|+....++++.+|.||+||++|.....+.+ T Consensus 65 ~nw~~~~Vd~~a~rl~~~Gf~~~d~~~~~~~l~~iw~~-----N~ld~~~~~~~~~al~~G~sf~~V~~~~d~~~----- 134 (474) T protein:vir:81 65 LGWTGKAVDALARRCNLEGFVWPDGDLDSLGGTEVVDD-----NHLLSEIDSAIVAAMQHGPAFLINTVGEDDEP----- 134 (474) T ss_pred cChHHHHHHHHHhhhcccceECCCCCccchHHHHHHHh-----cChhHHHHHHHHHHHhhCceeEEEecCCCCCc----- Confidence 7999999999999886554333 123346666654 78999999999999999999999976543332 Q ss_pred HHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCc Q lcl|Aclame:pro 172 QKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEM 251 (535) Q Consensus 172 ~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~ 251 (535) +|.++.++|.+++-- ++...++-...+ ++.+ .+. ++ ..+...++.++. .|+ ++.+..+.. T Consensus 135 ------~~~i~~~sp~~~~~~-~D~~~~~~~~al-~~~~--~~~-~g----~~~~~~ly~~~~--~~~---~~~~~~~~~ 194 (474) T protein:vir:81 135 ------EALIHVKDASEATGE-WNRRRRGLNNLL-SIID--KDK-EG----KVLSLALYLDNE--TVT---AQRDKATLK 194 (474) T ss_pred ------eeEEEEeccceEEEE-EeCCCCcceeee-EEEE--EcC-CC----cEEEEEEEeCCc--EEE---EEEcCccce Confidence 488999999988632 244433322221 1111 122 21 223334444432 222 222211111 Q ss_pred cccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchH-HHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccc Q lcl|Aclame:pro 252 YYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPL-LDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWV 329 (535) Q Consensus 252 ~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL-~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~ 329 (535) |. .+...|++| ||+|.| +..+.....|.+.+ .++..|..++.+..+++..+.+|.++|++|+.|++.+.. T Consensus 195 ------w~-~~~~~~~~g-vPvV~~~n~~~~~~~~G~s~i~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~ 266 (474) T protein:vir:81 195 ------WQ-VDRDEHVYG-VPAQVLPYKPAPKRPFGQSRITKPMMGLQDAGVRELARREGHMDVFSYPEFWLLGADESAL 266 (474) T ss_pred ------ee-eccCCCCCC-cceEEecccccccCcCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhc Confidence 11 234568998 799976 44455555678887 588899999999999999999999999999999986543 Q ss_pred h--hccCcceeeecCcccccCCCCC--------ccceeecCcchhH--HHHHHHHHHHHHHHhhhh---hc-ccccc-cc Q lcl|Aclame:pro 330 E--DVFKDFKVHLGSRAIIPLPQGA--------TAGILQITPNSVP--FEAMTHKESQMIAMGANL---LV-KSGGN-RT 392 (535) Q Consensus 330 ~--d~~~~~~i~iG~~~~~~lp~~~--------~~~~~e~~~~~l~--~~~l~~~e~qm~~lga~~---l~-~~~~~-~t 392 (535) . +......+......+|.+|++. .+++.|+.++++. .+.++.+..++.....-. +. .+..| .| T Consensus 267 ~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a~l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~S 346 (474) T protein:vir:81 267 KNADGTIKSVWEARLGRIKGLPDDADADIPQLARADVKQFPAASPDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTS 346 (474) T ss_pred ccccccccchhhhhHHHHhcCCCcccccccccccccccccCCCChhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccH Confidence 2 2333333444555678787654 3466777777764 366777777776544333 22 22344 44 Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----CceeEEEEec-ccCCccCCHHHHHHHHHHHhcCC Q lcl|Aclame:pro 393 FGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVN----DETVEYNLNT-DFPAARLTPNERAELILEWQQGA 467 (535) Q Consensus 393 a~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~----~~~~~v~~n~-df~~~~~d~~~~~al~~l~~~G~ 467 (535) +.+..............+...+..+|++++|++....|.... .....+++.| |.. .+..++.++++.+++++|. T Consensus 347 aeAi~a~~~~l~~kae~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~~~v~W~d~~-~~s~a~~aDa~~Kl~~a~~ 425 (474) T protein:vir:81 347 AESYDASQYELIAEAEGAVDDFTPALRKAFIRALAMKNKVAIDEIPDEWKSIDAKWRDPR-YLSKSAQADAGMKQLAAVP 425 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccchhhccceeEecCCC-ccCHHHHHHHHHHHHhccc Confidence 555566666777778888889999999999999998874221 1122344433 444 3456899999999999973 Q ss_pred -C-CHHHHHHHHHhCCCCCccCC-HHHHHHHHHhchhhcc---cCCCcCCCCCC Q lcl|Aclame:pro 468 -I-TFKEMRAGLRRAGVASEDDA-KAETEGKATVEFIAKT---AAAGKVGDAAS 515 (535) Q Consensus 468 -i-s~et~~~~L~r~gvl~~~~~-~eee~~~i~~e~~~~~---~~~~~~~~~~~ 515 (535) + +++++++. .|+.+++.. +++++. +++..+.. ......+.+++ T Consensus 426 ~~~~~~~~~~~---lg~t~~~i~~~~~~~~--~~~~~~~~~~l~~~~~~~~~aq 474 (474) T protein:vir:81 426 WLAETEVGLEL---IGLTPQQARRAMADKR--RVQGRGTLQALIDRSNNGATAQ 474 (474) T ss_pred CCCcHHHHHhh---cCCCHHHHHHHHHHHH--HHhHHHHHHHHHhcCCCCCCCC Confidence 4 45555543 354322111 111111 11111111 11111111111 No 54 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=100.00 E-value=9.1e-30 Score=179.80 Aligned_cols=392 Identities=11% Similarity=-0.004 Sum_probs=245.9 Q ss_pred HHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH Q lcl|Aclame:pro 42 FGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP 121 (535) Q Consensus 42 y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~ 121 (535) ...+.++.+++.+.|.|...++ ||+.. -.+.|+.+. +++ .|+++.+|++++++++-..-+. -.. T Consensus 1 l~~~~~r~~~~~~yY~g~~~~~-----~~~~~--------~p~~~~~~~-~~v-~nw~~~~Vds~a~rl~~~Gf~~-~d~ 64 (410) T protein:vir:95 1 MNLYQSRVNLRYKHYAMQHYEA-----PTGIT--------IPAHIRAKY-QAV-LGWAAKGVDSLADRLIFRAFAN-DDF 64 (410) T ss_pred CCcchhhHHHHHHHhcCCCCcc-----ccchh--------ccHHHHhHH-Hhh-cchhHHHHHHhHhhhccccccC-CCc Confidence 3444666777788899976553 44431 112365544 344 6999999999999986554332 134 Q ss_pred HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCcc Q lcl|Aclame:pro 122 ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKS 201 (535) Q Consensus 122 ~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~ 201 (535) .+..+++. |+|+....++++.+|.+|+||++|.-...+ +|.++.++|.++...- +...+ + T Consensus 65 ~l~~i~~~-----N~ld~~~~~~~~~al~~G~sf~~v~~~~d~-------------~~~i~~~sP~~~~~i~-Dp~~~-~ 124 (410) T protein:vir:95 65 NVTEIFDR-----NNPDIFFDSAILSALIGSCSFVYISKGEDD-------------EVRLQVIESSNATGVI-DPITG-L 124 (410) T ss_pred hHHHHHhh-----cChHHHHHHHHHHHHHhCceeEEEecCCCC-------------ceEEEEEcccceEEEE-eCCCC-c Confidence 56666653 799999999999999999999999532222 4899999999987554 33332 2 Q ss_pred ceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEec-cCC Q lcl|Aclame:pro 202 VISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIG-PLD 280 (535) Q Consensus 202 ~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~-~~~ 280 (535) ....+++ .+.+++ .......++.++ .++. +++.. .. + ...|++|+||+|.|. ..+ T Consensus 125 ~~~al~~----~~~~~~---~~~~~~~~~~~~--~~~~---~~~~~---~~-----~----~~~~~~g~vPvV~f~n~~~ 180 (410) T protein:vir:95 125 LVEGYAV----LARDDY---NRPTLEAYFEPN--ATHF---IPKDG---EP-----Y----SVTNETGIPLLVPVIHRPD 180 (410) T ss_pred eEEEEEE----EEecCC---CeEEEEEEEeCC--cEEE---EeeCC---cc-----c----cccCCCCCcceEEeccccc Confidence 2222222 111111 123333444432 1221 22211 11 1 124899999999764 444 Q ss_pred CcCCCCcchH-HHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCC---ccce Q lcl|Aclame:pro 281 NNADIDHPPL-LDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGA---TAGI 356 (535) Q Consensus 281 ~~~~~~~ppL-~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~---~~~~ 356 (535) .....|.+.| .++..|..++.+..+++..+.+|.++|++|+.|++.+.. ....+......+|.+|++. .+++ T Consensus 181 l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~~----~~~~~~~~~~~i~~~~~~~~~~~~~v 256 (410) T protein:vir:95 181 AVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILGLDPDAE----PMEKWKATVSSLLTISSSDKGVKPSV 256 (410) T ss_pred CCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeeccCCCCC----cCchhhhhhhhheeccCCCCCCcceE Confidence 4555678877 468899999999999999999999999999999865432 2234566666789988654 4677 Q ss_pred eecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC Q lcl|Aclame:pro 357 LQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMAFRKALRWANQFQT 430 (535) Q Consensus 357 ~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g 430 (535) .|+.+.++. .+.++.+..++..... ..+...+.|.++++| .............+...+..+|++++|++....+ T Consensus 257 ~q~~~~~l~~~~~~l~~l~~~~a~~s~lP~~~lg~~~~NpsSa~Al~a~~~~L~~ka~~k~~~fg~~l~~~~rla~~i~~ 336 (410) T protein:vir:95 257 GQFTTASMSPFTEQLRTAAAGFAGEMGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGLLNVAYVAACLRD 336 (410) T ss_pred EecCCCChHHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 788887775 3566667777665432 233444455444444 4455555666677777889999999999888765 Q ss_pred CCCC--CceeEEEEecc---cCCccCCHHHHHHHHHHHhc--CCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhc Q lcl|Aclame:pro 431 GIVN--DETVEYNLNTD---FPAARLTPNERAELILEWQQ--GAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAK 503 (535) Q Consensus 431 ~~~~--~~~~~v~~n~d---f~~~~~d~~~~~al~~l~~~--G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~ 503 (535) .... .....+.+.|. ....+..++.+++++|++++ |.++++++++.| |+. .+++..+..++.. T Consensus 337 ~~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~l---g~~-----~~~~~~~~~~e~~-- 406 (410) T protein:vir:95 337 EFRYTRSQFVRTAVKWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLT---GIA-----GDMSAKPVVSEGG-- 406 (410) T ss_pred CCCCcccccceeeEEeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhc---CCC-----hHHHHHHHHHHHH-- Confidence 3221 12223444443 22234458999999999998 788999887654 653 2222211111111 Q ss_pred ccCCCc Q lcl|Aclame:pro 504 TAAAGK 509 (535) Q Consensus 504 ~~~~~~ 509 (535) +.++ T Consensus 407 --~~g~ 410 (410) T protein:vir:95 407 --SNGE 410 (410) T ss_pred --hCCC Confidence 1111 No 55 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=99.96 E-value=1.6e-29 Score=178.43 Aligned_cols=436 Identities=11% Similarity=-0.034 Sum_probs=266.7 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHh--hhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQ--RAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~--rA~~~n~~~~tv~~ 105 (535) |-.. .|..---.+....++.+++.+.|.|...+..+...++.+.. ...++. |.+ .|+++.+|+. T Consensus 1 l~~~--~i~~~i~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~-----------~~~~~~~~ki~-~n~~~~Ivd~ 66 (451) T protein:vir:10 1 MELE--KIRAIISADAARRQEILQAKSYYYNKNDILKKGVVVQNRDE-----------NPLRNADNRIS-HNFHEILVDE 66 (451) T ss_pred CCHH--HHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccccccc-----------ccccccccccc-cchHHHHHHh Confidence 1111 12221123445677888899999997665443333332211 111111 322 5999999999 Q ss_pred HhhhhhccccccccCH--HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEE Q lcl|Aclame:pro 106 MMGQVFSRDPIRQLPP--ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITL 183 (535) Q Consensus 106 l~G~lF~k~p~~~~p~--~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~ 183 (535) .+|++|.++|+++.++ ....+++... .++++.....+++.++.+|++|++|..+....+... ...++-+.. T Consensus 67 ~~~yl~G~p~~~~~~~~~~~~~~~~~~~--~n~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~-----~~~~~~~~~ 139 (451) T protein:vir:10 67 KASYMFTYPVLFDIDNNKELNEKVTDVL--GNEFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQV-----TNQTFKYGV 139 (451) T ss_pred hhhheecccceeecCCcHHHHHHHHHHh--ccCHHHHHHHHHHHHhhcCeEEEEEeecCCcccccc-----cccceeEEE Confidence 9999999999986533 3444555443 368999999999999999999999976543322111 112456788 Q ss_pred echhhhhcceeeecCCccceeEEEEEEEEeecCC--CcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeee Q lcl|Aclame:pro 184 VHPTSIINWRTKLVGGKSVISLVVIQENVLAQDD--GFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPT 261 (535) Q Consensus 184 ~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d--~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~ 261 (535) ++|++++-.-.+.+. +.+.. .+|.+....++ ....+.+..+.+++.+ ..| .|+....+. ....... T Consensus 140 i~p~~~~~vydd~~~--~~~~~-~ir~~~~~~~~~~~~~~~~~~~~e~yt~~--~~~---~~~~~~~~~----~~~~~~~ 207 (451) T protein:vir:10 140 VNTEEIIPIYRNGIE--RELEA-VIRYYIQLEDVKGQIQKQAYTYVEFWTDK--ILD---KYKFFGVSC----CGSQIEH 207 (451) T ss_pred EcccceEEEEcCCCC--CceEE-EEEEEEeeecccccccceEEEEEEEEeCC--eEE---EEEecccCc----ccccccc Confidence 899998643222222 23433 34444433332 2223344455555543 233 233222111 1123344 Q ss_pred ccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeec Q lcl|Aclame:pro 262 DGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLG 341 (535) Q Consensus 262 ~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG 341 (535) +...|+++.||||.+.... .+.+.|.++..|..++....|++...+.+.++|+++++|+..+...+... .+. T Consensus 208 ~~~~~~~g~vPvv~~~nn~----~~~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~~~ 279 (451) T protein:vir:10 208 ITVQHRFNSVPFVEFSNNI----KKQSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTSEFLK----ELK 279 (451) T ss_pred ccccCCCCeeeEEEeccCC----CCCCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhhHH----HHh Confidence 5567999999999886433 24678899999999999999999999999999999999987654332211 122 Q ss_pred CcccccCC-----CCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh--hcccccccchHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 342 SRAIIPLP-----QGATAGILQITPNSVP-FEAMTHKESQMIAMGANL--LVKSGGNRTFGEAQQEEASEQSILSACTKN 413 (535) Q Consensus 342 ~~~~~~lp-----~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~ 413 (535) ...++.++ .+++++|++.+...-. ...++.+++.|...+.-+ -....++.|+.+..............+... T Consensus 280 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Alk~~~~~l~~k~~~k~~~ 359 (451) T protein:vir:10 280 RYKTIKTETDSEGDSGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQQDTENFGNASGVALKFFYRKLELKSGLLETE 359 (451) T ss_pred hCCeEEecCcCCccCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCcccccccccccccHHHHHHHHHHHHHHHHHHHHH Confidence 23333333 4578899987754333 456888888887776433 223345666665566677778888888999 Q ss_pred HHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHH Q lcl|Aclame:pro 414 VSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETE 493 (535) Q Consensus 414 ~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~ 493 (535) ++.+|.+++++++.++|.. +...+. +.+....+.-..+.++++.++. |.||++|++..+ +..++.++++ T Consensus 360 f~~~l~~~~~li~~~~~~~-d~~~i~--i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~------p~v~d~~~e~ 428 (451) T protein:vir:10 360 FRTSFDKLIKAILYFLGVT-DYKKIQ--QTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHH------PWVDDVEEAE 428 (451) T ss_pred HHHHHHHHHHHHHHHhCCC-Ccccee--EEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhC------CCCCCHHHHH Confidence 9999999999999999853 334444 4444455555678889888884 899999998643 3333455555 Q ss_pred HHHHhchhhc-ccCCCcCCCCCCCccc Q lcl|Aclame:pro 494 GKATVEFIAK-TAAAGKVGDAASGGTN 519 (535) Q Consensus 494 ~~i~~e~~~~-~~~~~~~~~~~~~~~~ 519 (535) .++..|-... .......++ -++ T Consensus 429 ~~~~ee~~~~~~~~~~~~~~----~~~ 451 (451) T protein:vir:10 429 KLYLEEKKIQASKVSDDYNN----FTE 451 (451) T ss_pred HHHHHHHHHHHHHHHhhcCC----CCC Confidence 5554332111 111111111 111 No 56 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=99.96 E-value=1.4e-28 Score=173.30 Aligned_cols=469 Identities=9% Similarity=-0.046 Sum_probs=266.0 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccC-----------HHH-HHHHHHHHHHHHHhcChH-HHHHHHh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQR-----------VEF-GEMLPKWRKIMDCLSGQE-AIKAKRE 67 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~h-----------p~y-~~~~~~w~~i~d~~~G~~-~~~~~g~ 67 (535) |.. -+-..-+.|.. ++-.-.+..+=..+.+++....- ..| ....++|+.+.+.|.|.. .+.. T Consensus 1 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~~i~~--- 75 (501) T protein:vir:96 1 MEQ-TLFTDSTGQER-VLNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLK--- 75 (501) T ss_pred Cce-eeeeeccccee-ccccccchhHHhhhcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccC--- Confidence 211 00001111111 11112223333344444332211 111 133467888888888842 2211 Q ss_pred hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-----HHHHHHhccCCCCCCHHHHHH Q lcl|Aclame:pro 68 EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-----ALEAIVEDIDGEGVSLDQQAK 142 (535) Q Consensus 68 ~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-----~l~~l~~d~d~~G~~L~~~~~ 142 (535) ++ .... .++. -.| .-.|+.+.+|+..+|++|.++|+++.++ .+..++.++- +.++++..+. T Consensus 76 ---~~---~~~~-----~~~~-~~r-i~~n~~k~Ivd~~~~yl~g~p~~~~~~~~~~~~~~~~~l~~~~-~~n~~~~~~~ 141 (501) T protein:vir:96 76 ---SG---RRKD-----NEMA-DKR-AVHNYGRMISKFKTGYLAGNPIRVEYDDNDDNSQNDDAIKRIG-RINDLDSLNR 141 (501) T ss_pred ---cc---ccCc-----cccc-cce-eecchHHHHHHHHhhhhcccCeeEeeCCccchhHHHHHHHHHH-HhcCHHHHHH Confidence 11 0000 0111 123 3479999999999999999999996542 2222222221 1268999999 Q ss_pred HHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccc Q lcl|Aclame:pro 143 KALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETT 222 (535) Q Consensus 143 ~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~ 222 (535) .+++.++.+|++|++|-....+ +|.+..++|.+++-.--+.+. ++.+..|++ ......+ . T Consensus 142 ~~~~~~~~~G~a~~~v~~dedg-------------~~~i~~~~p~~~~~v~d~~~~-~~~~~~v~~--~~~~~~~----~ 201 (501) T protein:vir:96 142 TLIRDLSQTGRAYEVIYRSEYD-------------ETRIKRLSPLETFVIYDNSLE-DNSIAAVRY--YNRGTLQ----S 201 (501) T ss_pred HHHHHHhhcCeEEEEEEEcCCC-------------ceEEEEEccceeEEEEcCCCC-CceEEEEEE--EEeecCC----C Confidence 9999999999999999544333 488999999998654222222 233333333 2222211 1 Q ss_pred eeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHh Q lcl|Aclame:pro 223 YVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYR 302 (535) Q Consensus 223 ~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~ 302 (535) .++.+.+++.+ ..| .|... + .+..+....|+++.||||.+.+. ..+.+.+.++..|..+..+ T Consensus 202 ~~~~~~vyt~~--~i~---~~~~~--~-------~~~~~~~~~~~~g~vPvv~~~nn----~~g~sd~e~v~~liDa~d~ 263 (501) T protein:vir:96 202 AKDVVEIYTDE--HIY---TLDAS--D-------DFNEISVTTHAFGTVPITEYLNN----IDGIGDYETELYLIDLYDS 263 (501) T ss_pred cEEEEEEEcCC--cEE---EEeeC--C-------CceeccccccCCCccceEEecCC----ccCCCchhhhHHHHHHHHH Confidence 23445555542 233 23221 1 12233456699999999987543 2467889999999999999 Q ss_pred hHHHHHHHHHHhcCceeEeeCCCCccchhc----cCcceeeecCccc-ccCCCCCccceeecCcchhH-HHHHHHHHHHH Q lcl|Aclame:pro 303 NSADYEEMAFVAGQPTAFFTGLTKDWVEDV----FKDFKVHLGSRAI-IPLPQGATAGILQITPNSVP-FEAMTHKESQM 376 (535) Q Consensus 303 ~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~----~~~~~i~iG~~~~-~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm 376 (535) ..|++...+.+.+.|+++++|...+..++. .....+.+..... .....+++++|+......-. ...++.+.+.| T Consensus 264 ~~s~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I 343 (501) T protein:vir:96 264 AESDTANHMSDMADAILAIYGDLALPKGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDI 343 (501) T ss_pred HHHHHHHHHHHhcCceeeeecccccCcccchhhhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHH Confidence 999999999999999999999764432211 1112233322222 22334567888866543332 35677777777 Q ss_pred HHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---ceeEEEEecccCCcc Q lcl|Aclame:pro 377 IAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND---ETVEYNLNTDFPAAR 450 (535) Q Consensus 377 ~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~---~~~~v~~n~df~~~~ 450 (535) ..++.-.- ...+++.|+.+..................+..++.++++++..+++....+ ....+++.+...... T Consensus 344 ~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~ 423 (501) T protein:vir:96 344 HIFTNTPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPK 423 (501) T ss_pred HHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeCCCCCc Confidence 76654331 222355555555555666677778888899999999999999987643221 122344545445555 Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhc--ccCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 451 LTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAK--TAAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 451 ~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) ..++.++++.++. |.||++|+++.| +.+ .+.++|++||..|.... ....+..++..+..+++.+..++.. T Consensus 424 n~~e~ad~~~kl~--g~iS~et~~~~l---~~v---~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~ 495 (501) T protein:vir:96 424 SLNEQVSILTGLG--GQVSQETALSLS---GLV---ESPNEELDKINKEMSEIDFKGYSNDFNEHVGKYTDEVKETHTDD 495 (501) T ss_pred CHHHHHHHHHHHh--ccCchHHHHHhC---CCC---CCHHHHHHHHHHHHHHhhccccccchhhcccccCCcCCCCCCCc Confidence 5678889988885 899999998754 222 34677788887664322 1222333333333344433333333 Q ss_pred CCCCCC Q lcl|Aclame:pro 529 GGNQAG 534 (535) Q Consensus 529 ~~~~~~ 534 (535) ++..-- T Consensus 496 ~e~~~~ 501 (501) T protein:vir:96 496 FEREYE 501 (501) T ss_pred cccccC Confidence 322222 No 57 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=99.96 E-value=4.3e-29 Score=176.09 Aligned_cols=442 Identities=8% Similarity=0.004 Sum_probs=256.4 Q ss_pred CCcchhhhhhhhhcceecCC-CCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPP-QAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~ 79 (535) |--+ --|+++=| .-..++. .|..---.+....++.+++.+.|.|...+.... ++.+ . T Consensus 1 ~~~~--------~~~~~~~~~~~~~~~~------~i~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~~----~~~~----~ 58 (453) T protein:vir:73 1 MNLK--------PIKLMTYSRDEEITDK------VVNDFMKKHQEEVERYEYLGNMYKGIMEISSQK----AKDS----W 58 (453) T ss_pred Cccc--------cceeeeccccccCCHH------HHHHHHHHHHHHHHHHHHHHHHhccccchhcCC----CCCc----c Confidence 1100 00111111 1111111 111111234566788889999999987664321 0100 0 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT 158 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV 158 (535) ... .|.+ .|+.+.+|+..+|++|.++|+++..+ ....+++++- +.++++.....+++.++.+|++|++| T Consensus 59 ---~~~-----~ki~-~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~-~~n~~~~~~~~~~~~~~~~G~~~~~v 128 (453) T protein:vir:73 59 ---KPD-----NRLT-NNFAKYIVDTFVGYFNGIPIKKTHDDKSVLEAMQLFD-NLNDMEDEESELAKIACVYGRAYELM 128 (453) T ss_pred ---Ccc-----ceee-cchHHHHHHHhhhhhcccCceeecCChHHHHHHHHHH-HhcChhHHHHHHHHHHHhcCeEEEEE Confidence 001 1323 59999999999999999999986432 2233333332 22689999999999999999999999 Q ss_pred eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceE Q lcl|Aclame:pro 159 DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNY 238 (535) Q Consensus 159 D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y 238 (535) .....+ +|-+..++|.+++----+.+ ++ .+. ..++... +.+ ....+.+++.+ ..| T Consensus 129 ~~d~~~-------------~~~i~~~~p~~~~~v~dd~~-~~-~~~-~~i~~~~-~~~------~~~~~~vyt~~--~i~ 183 (453) T protein:vir:73 129 YQNEST-------------ESEVIYCSPLNVFMVYDDSI-KQ-KPL-FAVYYGF-DEE------GNLSGTVYTLL--ETI 183 (453) T ss_pred EeCCCC-------------ceEEEEEcccceEEEEeCCC-Cc-eeE-EEEEEEE-ecC------ceEEEEEEeCC--eEE Confidence 655443 38888999998854332222 22 222 2222222 211 12234444432 222 Q ss_pred EEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCce Q lcl|Aclame:pro 239 QVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPT 318 (535) Q Consensus 239 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~ 318 (535) .|+... ..+..++...|++|.||||.+.... .+.+.+.++..|..+..+..|++...+.+.++|+ T Consensus 184 ---~~~~~~--------~~~~~~~~~~~~~g~vPvv~~~n~~----~g~s~~~~v~~liDa~~~~~S~~~~~~~~~~~~~ 248 (453) T protein:vir:73 184 ---SITGKA--------GEVKFGESTYNVYSDLPIVEYNFNE----ERQSIFEPVHSLINSYNKVTSEKANDVEYFSDQY 248 (453) T ss_pred ---EEEecC--------CceEEccceeccCCceeEEEecCCC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHhccce Confidence 222211 1233344566999999999875432 3567789999999999999999999999999999 Q ss_pred eEeeCCCCccchhccC--cceee---ecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh--hcccccc Q lcl|Aclame:pro 319 AFFTGLTKDWVEDVFK--DFKVH---LGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAMGANL--LVKSGGN 390 (535) Q Consensus 319 ~~~~G~~~~~~~d~~~--~~~i~---iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l~~~~~~ 390 (535) ++++|...++...... ...+. .........+.+++++|++...+.-. ...++.+.++|..++.-+ -....++ T Consensus 249 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn 328 (453) T protein:vir:73 249 LVFLGAEVDEEDAKNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIFQFTMAANISDENFGN 328 (453) T ss_pred eeeecCCCCchhhhcccccccccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHHHHhCCcccCcccccC Confidence 9999986554322211 11111 12222333456677889886654332 356778888777665332 2223355 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eeEEEEecccCCccCCHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 391 RTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDE-TVEYNLNTDFPAARLTPNERAELILEWQQGAIT 469 (535) Q Consensus 391 ~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~-~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is 469 (535) .|+.+..............+...+..++++++++++.+.+...... ...+++.+........++.++++.++. |.|| T Consensus 329 ~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~v~f~~~~p~~~~~~a~~~~k~~--giis 406 (453) T protein:vir:73 329 SSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNASNKDAWKDIEYTFTRNEPKDIKEQAETANILK--GITS 406 (453) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCCCHHHHHHHHHHHh--ccCc Confidence 5555555666666777788888899999999999998876432221 123444444444555678888888886 8999 Q ss_pred HHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccccccc Q lcl|Aclame:pro 470 FKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKL 523 (535) Q Consensus 470 ~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~ 523 (535) +||+++.+ + ..++.++|.+||++|-.......... ......+...++ T Consensus 407 ~et~~~~~---~---~~~d~~~E~~ri~~E~~~~~~~~~~~-~~~~~~~~~~~~ 453 (453) T protein:vir:73 407 EETALSVI---S---VIPDVQAEMEKIKKKKLLQLSLTRTS-NLVRMKQMRGNL 453 (453) T ss_pred HHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHHHHHhc-cCCcchhhhcCC Confidence 99988644 2 22346677777766633221111100 000111111111 No 58 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=99.96 E-value=5e-30 Score=181.24 Aligned_cols=389 Identities=11% Similarity=0.039 Sum_probs=250.5 Q ss_pred CC--CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhh Q lcl|Aclame:pro 32 LP--NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQ 109 (535) Q Consensus 32 M~--~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~ 109 (535) |- .|++---++....+++.++.+.|.|...++ ||+.- ..+ .++.+. +++ .|+++.+|++++++ T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~-----~~~~~----~p~----~~~~~~-~~v-~nw~~~iVds~a~r 65 (409) T protein:vir:94 1 MTEKGIGYLRFKLSVHKRRAEMRYDQYAMKYVDR-----FKGIT----IPQ----ALSQQY-RSI-LGWCAKGVDSLADR 65 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhcccCchh-----hcChh----hhH----HHHHHH-hhh-cchhHHHHHHhHhh Confidence 55 477777778889999999999999987654 44321 111 233322 233 59999999999999 Q ss_pred hhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhh Q lcl|Aclame:pro 110 VFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSI 189 (535) Q Consensus 110 lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~I 189 (535) ++-..-+ .-...+..+++. |+++....++++.+|.+|+||++|.....+ +|.++.++|.++ T Consensus 66 l~~~Gf~-~~d~~l~~i~~~-----N~ld~~~~~~~~~aliyG~sf~~v~~~~dg-------------~~~i~~~sp~~~ 126 (409) T protein:vir:94 66 LVFREFE-NDDFTVNEIFEE-----NNPDIFFDSAVLSSLIASCSFTYISKGEND-------------AVRLQVIEAVNA 126 (409) T ss_pred cccCccc-CCchHHHHHHHh-----cChhHHHHHHHHHHHHhcceeEEEecCCCC-------------ceEEEEeccceE Confidence 8654422 123456777654 799999999999999999999999633222 489999999998 Q ss_pred hcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccc Q lcl|Aclame:pro 190 INWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFK 269 (535) Q Consensus 190 i~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (535) +-+- +...+ +....+++. + ++..+ ......++.++. +| ..|+ .... +.. ..|++| T Consensus 127 ~~i~-D~~~~-~~~~a~~~~----~-~d~~~--~~~~~~~~~~~~--~~--~~~~-~~~~--------~~~---~~n~~g 181 (409) T protein:vir:94 127 TGII-DPITG-LLTEGYAVL----E-RDENN--NVVLEAHFLPDR--TD--YYYR-DSRN--------NIS---IANPTG 181 (409) T ss_pred EEEE-ecCCC-ceeeeEEEE----E-ecCCC--ceEEEEEEecCc--EE--EEEe-cCce--------eEe---eeCCCC Confidence 7553 44332 222222221 1 12212 223333444432 22 1222 1111 111 248999 Q ss_pred eeEEEEe-ccCCCcCCCCcchH-HHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCccccc Q lcl|Aclame:pro 270 EIPFQFI-GPLDNNADIDHPPL-LDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIP 347 (535) Q Consensus 270 ~IP~v~~-~~~~~~~~~~~ppL-~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~ 347 (535) +||+|.| +..+.+...|.+.| .++..|..++.+..++...+.+|.++|++|+.|++.+. .....+..+.+.+|. T Consensus 182 ~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~----~~~~~~~~~~~~i~~ 257 (409) T protein:vir:94 182 HPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDA----EPMETWKATVSSMLQ 257 (409) T ss_pred CcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCC----cccchhhhhHHHhhc Confidence 9999966 44455556778888 56899999999999999999999999999999986532 222346677778999 Q ss_pred CCCCC---ccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchHH-HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 LPQGA---TAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFGE-AQQEEASEQSILSACTKNVSMAF 418 (535) Q Consensus 348 lp~~~---~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~~-a~~~~~~~~S~L~~~a~~~~~a~ 418 (535) +|++. ++++-|+.+.++. .+.++.+..++..... ..+...+.|.++++ ..............+...+..+| T Consensus 258 ~~~d~dg~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~~k~~~fg~~~ 337 (409) T protein:vir:94 258 FTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGL 337 (409) T ss_pred CCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 98543 4677788887764 3567777777765433 22333444544444 34444555555667777788999 Q ss_pred HHHHHHHHHHcCCCCC--CceeEEEEecc---cCCccCCHHHHHHHHHHHhcC--CCCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 419 RKALRWANQFQTGIVN--DETVEYNLNTD---FPAARLTPNERAELILEWQQG--AITFKEMRAGLRRAGVASED 486 (535) Q Consensus 419 ~~~lr~~a~~~g~~~~--~~~~~v~~n~d---f~~~~~d~~~~~al~~l~~~G--~is~et~~~~L~r~gvl~~~ 486 (535) ++++|++....+.... ..-..+.+.|. .......++.++++.|++++| ..++++.++ +.|+-++| T Consensus 338 ~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~---~lG~~~~d 409 (409) T protein:vir:94 338 LNVAYLAACLRDDAPYLREQFRKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRD---LTGIEGGE 409 (409) T ss_pred HHHHHHHHHHhCCCCccccccccceEEeccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHH---HcCCCCCC Confidence 9999998887764221 11122333343 112233477899999999999 556777765 45765444 No 59 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=99.96 E-value=8.3e-29 Score=174.54 Aligned_cols=436 Identities=11% Similarity=0.060 Sum_probs=254.6 Q ss_pred CCcchhhhhhhhhcceec-CCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLI-PPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~ 79 (535) |.-|. -+.++ |--.+.+.- .|..---.+....++++.+.+.|.|...+..+ .. .... T Consensus 1 ~~~~~--------~~~~~~~~~~~~~~~------~i~~~i~~~~~~~~r~~~~~~Yy~g~~~i~~~-------~~-~~~~ 58 (452) T protein:vir:36 1 MKYKP--------PKLMTFSKDEPITVE------VVTKFMEKHKLEVARYEYLKNMYLGIMAIDDE-------PA-KDSW 58 (452) T ss_pred CcccC--------ceeEEcCCccCCCHH------HHHHHHHHHHHHHHHHHHHHHHhccccccccC-------cc-cccc Confidence 11110 01111 111111110 11111123455667888888889887655321 11 0000 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT 158 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV 158 (535) + .. .| .-.|+.+.+|+..++++|.++|++...+ .....+.++-.. ++++.....+++.++.+|++|++| T Consensus 59 ~------~~--~k-i~~n~~~~ivd~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~~~~~~~G~~~~~v 128 (452) T protein:vir:36 59 K------PD--NR-LAVNFTKYIVDTFTGYFNGIPVKKSHSDKEILTKLQEFDNL-NDMEDEESELAKMACIYGRAFEFL 128 (452) T ss_pred C------cc--ce-eecchHHHHHHHHhhhhcccCceeecCChhHHHHHHHHHhh-cChhHHHHHHHHHHHhcCeEEEEE Confidence 0 00 12 2369999999999999999999986432 233333333222 689999999999999999999999 Q ss_pred eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceE Q lcl|Aclame:pro 159 DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNY 238 (535) Q Consensus 159 D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y 238 (535) .....+ +|.+..++|.+++-.--+.+ ....+. .++... +.+ .+..+.+++.+ ..| T Consensus 129 ~~d~~g-------------~~~i~~~~p~~~~~v~d~~~-~~~~~~--~i~~~~-~~~------~~~~~~vyt~~--~i~ 183 (452) T protein:vir:36 129 YQDEDT-------------QTNVVYNSPENMFMVYDDTV-KQEPLF--AVRYGV-DED------KKLQGEVYTLL--ETI 183 (452) T ss_pred EecCCC-------------eeEEEEEcccceEEEEcCCC-CCceEE--EEEEEE-ecC------ceEEEEEEecC--eEE Confidence 654333 48899999999875432222 222222 223222 111 12334455442 222 Q ss_pred EEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCce Q lcl|Aclame:pro 239 QVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPT 318 (535) Q Consensus 239 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~ 318 (535) .|+... +.+...+...|++|.||||.+.+.. .+.+.|.++..|..+..+..|++...+.+.+.|+ T Consensus 184 ---~~~~~~--------~~~~~~~~~~~~~g~iPvv~~~n~~----~g~sd~e~v~~liDa~d~~~s~~~~~~~~~~~p~ 248 (452) T protein:vir:36 184 ---KISGEN--------DEISFGEGTYNPYPDLPVVEFYFNE----ERMSIFESVISLVNAFNKAISEKANDVDYFSDQY 248 (452) T ss_pred ---EEEEcC--------CceEEecceeccCCcccEEEecCCC----CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCce Confidence 232221 1123334456899999999875432 3567889999999999999999999999999999 Q ss_pred eEeeCCCCccchhccCcceeeecCcccccCCCC-----CccceeecCcchhH-HHHHHHHHHHHHHHhhhh--hcccccc Q lcl|Aclame:pro 319 AFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQG-----ATAGILQITPNSVP-FEAMTHKESQMIAMGANL--LVKSGGN 390 (535) Q Consensus 319 ~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~-----~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l~~~~~~ 390 (535) ++++|...+...... +-...+|.++.+ ++++|+......-. ...++.+.+.|..++.-+ .....++ T Consensus 249 ~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn 322 (452) T protein:vir:36 249 LTFLGAAVEEEDLKN------IRSNRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANISDESFGS 322 (452) T ss_pred eEeecCCcCchhhhh------hhhcceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCccccCcccccC Confidence 999997654322211 112344555443 36788886654333 356777788776665332 2233456 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceeEEEEecccCCccCCHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 391 RTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND-ETVEYNLNTDFPAARLTPNERAELILEWQQGAIT 469 (535) Q Consensus 391 ~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~-~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is 469 (535) .|+.+..............+...++.++++++++++.+.+..... +...+++.+........++.++++.++ +|.|| T Consensus 323 ~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~~~i~i~f~~~~p~d~~~~a~~~~k~--~g~iS 400 (452) T protein:vir:36 323 SSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNVSNKDSWKDIEYTFTRNEPKDIKEQAETANIL--MGITS 400 (452) T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccceEEeCCCCCcCHHHHHHHHHHH--hccCC Confidence 666665666666677777888889999999999999887643222 112345555555555567788888886 58999 Q ss_pred HHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhc-----ccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 470 FKEMRAGLRRAGVASEDDAKAETEGKATVEFIAK-----TAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 470 ~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~-----~~~~~~~~~~~~~~~~~~~ 522 (535) ++|+++.+ +.+ ++.++|.+||.+|-... ....+..+.....+.+... T Consensus 401 ~et~~~~~---~~~---~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 401 QETALSVI---SVI---PDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVSETNEE 452 (452) T ss_pred hHHHHHhC---CCC---CCHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCccccCC Confidence 99998654 322 34667777776653211 1111111111111111111 No 60 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=99.96 E-value=1.4e-28 Score=173.22 Aligned_cols=454 Identities=10% Similarity=0.021 Sum_probs=259.2 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCC-CCCccCH---HH-HHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLP-NVGYQRV---EF-GEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSV 75 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~-~v~~~hp---~y-~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~ 75 (535) |..- -+..+-+.+. +++.... .+ ....++|+++++.|.|...+... |.-. T Consensus 1 ~~~~-------------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~yy~g~~~i~~~-----~~~~- 55 (489) T protein:vir:99 1 MLQE-------------------DFEAIDYESKLWIDQLKNYISRFKAEQLERLKELKRYYLGDNNIKYR-----PAKT- 55 (489) T ss_pred CCcc-------------------ceeeeCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccc-----cccc- Confidence 1100 0111112222 1111000 11 24567899999999997655321 1100 Q ss_pred CCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcE Q lcl|Aclame:pro 76 DSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRA 154 (535) Q Consensus 76 ~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~ 154 (535) ++ ... . .| .-.|+++.+|+.++|++|.++++++.+ +....+++++-.. ++++.++..+++.++.+|++ T Consensus 56 ---~~-~~~---~--~k-i~~n~~~~iv~~~~~~l~g~~~~~~~~d~~~~~~l~~~~~~-n~~~~~~~~~~~~~~~~G~~ 124 (489) T protein:vir:99 56 ---DK-YAA---D--NR-IASDFAKYITVFEQGYMLGVPVEYKNENKDLQAAIDLMSVR-NNEDYHNVKIKTDLSIYGRA 124 (489) T ss_pred ---cc-cCC---c--ce-eecchHHHHHHHHhhhhccCCceeecCChhHHHHHHHHHhh-cChhHHHHHHHHHHhhCCeE Confidence 00 000 0 12 236999999999999999999998754 3344444444333 68999999999999999999 Q ss_pred EEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecC Q lcl|Aclame:pro 155 AIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNA 234 (535) Q Consensus 155 ~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~ 234 (535) |++|....... ...+|.+..++|.+++-.--+.. ....+..|++.+ .+..+ .+.+..+.+++.+. T Consensus 125 ~~~v~~~~~~d---------~~~~~~i~~~~p~~~~~v~dd~~-~~~~~~~i~~~~--~~~~~---~~~~~~~~~y~~~~ 189 (489) T protein:vir:99 125 YELLTVEKIDD---------KKTEVKLYQLPAEQTFVIYDDTY-QRNSLMAVHFYD--IDYGS---GKRKQIIKAYTSDT 189 (489) T ss_pred EEEEeeccCcC---------CCcceEEEEEcccceEEEEcCCC-CCceEEEEEEEE--EecCC---CceEEEEEEEeCCc Confidence 99996422111 12468999999999764322111 122333233222 22221 23445566666542 Q ss_pred CceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 235 EGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVA 314 (535) Q Consensus 235 ~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~ 314 (535) .| .|+....+. ......+...|+|+.||||.+.+.. .+.+.|.++..|..++.+..|++...+.+. T Consensus 190 --i~---~~~~~~~~~-----~~~~~~~~~~~~~g~vPvv~~~n~~----~~~s~~~~v~~liDa~d~~~s~~~~~~~~~ 255 (489) T protein:vir:99 190 --IY---TYEDYNLET-----KGMRLKDYEGHFFKGVPVNEYANNE----ERTGAYESVLDNIDAYDLSQSELANFQQDS 255 (489) T ss_pred --EE---EEEecCCCc-----ccceecccccccCCceeEEEeecCC----CCCCchhhhHHHHHHHHHHHHHHHHHHHHh Confidence 23 243322221 1223345567999999999875432 356778899999999999999999999999 Q ss_pred cCceeEeeCCCCccchhccCcceeeecCcc------------cccCC-------CCCccceeecCcchhH-HHHHHHHHH Q lcl|Aclame:pro 315 GQPTAFFTGLTKDWVEDVFKDFKVHLGSRA------------IIPLP-------QGATAGILQITPNSVP-FEAMTHKES 374 (535) Q Consensus 315 ~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~------------~~~lp-------~~~~~~~~e~~~~~l~-~~~l~~~e~ 374 (535) ++|+++++|......+.............. ++.++ .+.+++|+...-..-. ...++.+++ T Consensus 256 ~~~~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 335 (489) T protein:vir:99 256 VNALLVIAGNAYTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLKKEYDTAGSEAYKNRLVA 335 (489) T ss_pred hhhhhhhccCCcccccchhhhhhcccccccccccccccccceeeeeccccCccccccceeeeeecCChHHHHHHHHHHHH Confidence 999999999754332211111111111111 12211 2335566665433222 356788888 Q ss_pred HHHHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCce-----eEEEEeccc Q lcl|Aclame:pro 375 QMIAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDET-----VEYNLNTDF 446 (535) Q Consensus 375 qm~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~-----~~v~~n~df 446 (535) .|..++.-.- ...+++.|+.+.........+....+...++.+|++++++++.+++....... ..+++.+.. T Consensus 336 ~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~~~~~~~i~v~f~~ 415 (489) T protein:vir:99 336 DILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGNEATTYSLVNDTSIVFTP 415 (489) T ss_pred HHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccceEEeCC Confidence 8877764431 22234555555555666777778888889999999999999998763221111 124455555 Q ss_pred CCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc-CCCcCCCCCCCccccccccc Q lcl|Aclame:pro 447 PAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA-AAGKVGDAASGGTNKAKLNN 525 (535) Q Consensus 447 ~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~ 525 (535) ......++.++++.++. |.||++|+++.| ..++ +.+.++|.+||..|-..... ......+...+..+..+..| T Consensus 416 ~~p~d~~~~~~~~~kl~--giis~et~~~~l---~~v~-~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~p 489 (489) T protein:vir:99 416 NLPQNDNEIVTAAQNLY--GIVSDQTIFEIL---NTVT-GVDAEAELKRLKEEADKKQSLPEPRLVGDASGQEEPTAEKP 489 (489) T ss_pred CCCcCHHHHHHHHHHHh--ccCCHHHHHHhc---CCCC-chhHHHHHHHHHHHHHHHhccccccccCCCCCCcCCCCCCC Confidence 55555677888888874 899999988754 2232 23467777788666433221 11111111111111122222 No 61 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=99.96 E-value=1.1e-28 Score=173.77 Aligned_cols=447 Identities=9% Similarity=0.019 Sum_probs=259.1 Q ss_pred hhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHH Q lcl|Aclame:pro 8 IRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYE 87 (535) Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~ 87 (535) |--+...++ |++.-..+....++++.+.+.|.|.+.+..+-..+.. .. ... ..... T Consensus 1 ~~~~~~~~~------------------i~~~~~~~~~~~~~~~~~~~Yy~g~~~I~~~~~~~~~-~~---~~~--~~~~~ 56 (470) T protein:vir:10 1 MELDALKKL------------------IQNTSTSRNDLINNYKQAVNYYENKTDITTRNNGKAK-LN---KEG--KKDPL 56 (470) T ss_pred CchHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHhccccchhccccchhc-cc---ccc--ccccc Confidence 111111110 1222223456778899999999998776443111110 00 000 00000 Q ss_pred HH-HhhhccchhHHHHHHHHhhhhhccccccccCHH--HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 88 TY-LQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA--LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 88 ~r-l~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~--l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) .+ -.|.+ .|+.+.+++..+|++|.+||+++..+. .+.+.+-.+ .+.+.....+++.++.+|++|++|..+..+ T Consensus 57 ~~~~~ki~-~n~~k~Iv~~~~~yl~G~p~~~~~~d~~~~~~l~~~~~---~~~~~~~~~l~~~~~~~G~a~~~~y~d~~~ 132 (470) T protein:vir:10 57 RSADNRIP-SNFYQLLVDQEAGYVASVFPDIDVGKDADNKKIIDVLG---DDRALTLNGLLVDSSNAGRAWLHYWIDEDG 132 (470) T ss_pred ccCCcccc-cchHHHHHHhhhhheeccceeeecCchHHHHHHHHHHh---hhHHHHHHHHHHHHhhcCeeEEEEEecCCC Confidence 01 11333 799999999999999999999865432 222222111 356666678899999999999999776544 Q ss_pred cccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEe Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWR 244 (535) Q Consensus 165 ~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~ 244 (535) ++-+..++|.+++-.--+.+. ..+..+ +|.....+.+ +.+.++.+-+++.+. .+ .|+ T Consensus 133 -------------~~~~~~~~p~~~~~v~d~~~~--~~~~a~-ir~y~~~~~~--~~~~~~~~e~yt~~~--~~---~~~ 189 (470) T protein:vir:10 133 -------------NFRYGIIQPDQITPIYATTLD--NKLLGI-LRSYKQLDPD--SGKYFTVHEYWTDKE--AQ---FFR 189 (470) T ss_pred -------------ceEEEEEcccceEEEEcCCCC--CceEEE-EEEEEeeecC--CceEEEEEEEEcCCc--EE---EEE Confidence 377888999888654322222 234433 2222222222 224445555555321 21 222 Q ss_pred eeccCCcc------------ccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 245 RETQEEMY------------YSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAF 312 (535) Q Consensus 245 ~~~~~~~~------------~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~ 312 (535) ....+... .............|+|+.||||.+.... .+.+.|.++..|..++....|++...+. T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~~liDa~d~~~S~~~~~~~ 265 (470) T protein:vir:10 190 TNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIEFSKNK----YRLPELNKYKGLIDAYDDIYNGFINDLD 265 (470) T ss_pred eecCcceeccccccccccccccccccccccccccCCCeeeEEEeecCC----CCCCchhHHHHHHHHHHHHHHHHHHHHH Confidence 21111110 0011122234556999999999886433 4678899999999999999999999999 Q ss_pred HhcCceeEeeCCCCccchhccCcceeeecCcccccCC-----CCCccceeecCcchhH-HHHHHHHHHHHHHHhhhh--h Q lcl|Aclame:pro 313 VAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP-----QGATAGILQITPNSVP-FEAMTHKESQMIAMGANL--L 384 (535) Q Consensus 313 ~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp-----~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~lga~~--l 384 (535) +.+.|+++++|...+...+... .+....++.++ .+++++|++...+.-. ...++.+.++|...+.-+ - T Consensus 266 ~~~~~~lvl~g~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~~ 341 (470) T protein:vir:10 266 DVQTVILVLTNYGGADLHQFMN----DLRKYKSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDPA 341 (470) T ss_pred HhcCcceeeecCCccccchhhh----hhhhcCeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCCC Confidence 9999999999986554332211 12222334343 2467888887665433 467888888888766433 2 Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHh Q lcl|Aclame:pro 385 VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQ 464 (535) Q Consensus 385 ~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~ 464 (535) ....++.|+.+..............+-..++.+|.++++++..+++.. +.....+++.+....+.-..+.++.+.++ T Consensus 342 ~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~l~~~-~~d~~~i~i~f~~~~p~d~~e~~~~~~~~-- 418 (470) T protein:vir:10 342 NFESSNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRAIMRYLNFS-DADKRHISQHWTRTKVEDSLTKAQIVSTV-- 418 (470) T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcccceeeEEeccCCCCCHHHHHHHHHHH-- Confidence 233455555555555566666677777788889999999999888743 22333455555555555556677777665 Q ss_pred cCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 465 QGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 465 ~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) +|.||+||+++.+ + ..++.++|.+||.+|-....+......+..+++.++.. T Consensus 419 ~g~iS~et~l~~~---p---~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 419 ANYSSKEAVAKAN---P---IVDDWQQELKDLAKDKEENDPYSNQADELNGKGVNDEQ 470 (470) T ss_pred hccCcHHHHHHhC---C---CCCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCC Confidence 6899999987543 3 23346777888876643332222222222222222222 No 62 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=99.96 E-value=6.1e-29 Score=175.25 Aligned_cols=420 Identities=10% Similarity=0.007 Sum_probs=248.7 Q ss_pred CCC-----CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 32 LPN-----VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 32 M~~-----v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) |.+ |.+--..+....++++.+.+.|.|.+.++ |+|+.. ...|++. + ...|+++.+|+.+ T Consensus 1 ~~~~~~~~i~~l~~~~~~~~~r~~~l~~Yy~G~~~i~-----~~~~~~--------~~~~~~~--k-~~~n~~~~ivd~~ 64 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLSSWHCCIEGYYEGSNRVR-----DLGVAI--------PPELQRV--Q-TVVSWPGIAVDAL 64 (441) T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch-----hcCccc--------chhhhhh--h-hhcchHHHHHHHH Confidence 332 33334456667788888999999976543 344321 1123332 2 3479999999999 Q ss_pred hhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEech Q lcl|Aclame:pro 107 MGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHP 186 (535) Q Consensus 107 ~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~ 186 (535) +++++-...+..-++.+..+++. |+++.+...+++.++.+|++|++|..+..|. |.+..++| T Consensus 65 ~~~l~~~g~~~~d~~~l~~i~~~-----n~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~-------------~~i~~~~p 126 (441) T protein:vir:80 65 EERLDWLGWTNGDGYGLDGVYAA-----NRLATASCDVHLDALIFGLSFVAIIPHGDGT-------------VSVRPQSP 126 (441) T ss_pred HhhhccccccCCChHHHHHHHHh-----cCHHHHHHHHHHHHhhcCeeEEEEEeCCCCc-------------eEEEEEcc Confidence 99996443333334567777764 6899999999999999999999996554443 78999999 Q ss_pred hhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCC Q lcl|Aclame:pro 187 TSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN 266 (535) Q Consensus 187 ~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 266 (535) ++++-. ++...++..+ .+++.. .+. + .+..+.++..+ ..| +.+.... ..+..++...| T Consensus 127 ~~~~~i-~d~~~~~~~~-~~~~~~--~~~-~-----~~~~~~vy~~~--~~~--~~~~~~~--------~~~~~~~~~~~ 184 (441) T protein:vir:80 127 KNCTGK-FSADGSRLDA-GLVVQQ--TCD-P-----EVVEAELLLPD--VIV--QVERRGS--------REWVEVDRIPN 184 (441) T ss_pred ceEEEE-EeCCCCceeE-EEEEEE--Eec-C-----ceEEEEEEecC--eEE--EEEEcCC--------cceeecccccc Confidence 998642 1222232222 222221 111 1 12223344432 222 2222211 12334455679 Q ss_pred ccceeEEEEe-ccCCCcCCCCcchHH-HHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcc Q lcl|Aclame:pro 267 PFKEIPFQFI-GPLDNNADIDHPPLL-DLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRA 344 (535) Q Consensus 267 ~l~~IP~v~~-~~~~~~~~~~~ppL~-dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~ 344 (535) ++|.||+|.| +..+.+...|.+.|. ++..|..++.+..|+...++++.++|+++++|.+.+...+. ........ T Consensus 185 ~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~~~~~~~~~~~~~i~G~~~~~~~~~----~~~~~~~~ 260 (441) T protein:vir:80 185 VLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQSVNRDFYAYPQRWVTGVSADEFSQP----GWVLSMAS 260 (441) T ss_pred CCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHhhcCceeeeecCCccccccc----hhhhcccc Confidence 9999999966 444555567788886 58899999999999999999999999999999865443222 23345567 Q ss_pred cccCCCCCc---cceeecCcchhH--HHHHHHHHHHHHHHhhh---hhccccccc-chHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 345 IIPLPQGAT---AGILQITPNSVP--FEAMTHKESQMIAMGAN---LLVKSGGNR-TFGEAQQEEASEQSILSACTKNVS 415 (535) Q Consensus 345 ~~~lp~~~~---~~~~e~~~~~l~--~~~l~~~e~qm~~lga~---~l~~~~~~~-ta~~a~~~~~~~~S~L~~~a~~~~ 415 (535) +|.+|.+++ +.+.++..+++. .+.++.+..++.....- .+...+.+. |+.+.+............+...+. T Consensus 261 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~~~~Sg~Al~~~~~~l~~k~~~~~~~f~ 340 (441) T protein:vir:80 261 VWAVDKDDDGDTPNVGSFPVNSPTPYSDQMRLLAQLTAGEAAVPERYFGFITSNPPSGEALAAEESRLVKRAERRQTSFG 340 (441) T ss_pred cccCCCCCCCCcceeEecCccchHHHHHHHHHHHHHHhcccCCCHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 788876544 455566655543 35566666666543322 122233333 344445555666777778888888 Q ss_pred HHHHHHHHHHHHHcCCCCCCce--eEEEEecccCCccCCHHHHHHHHHHHhcCCC--CHHHHHHHHHhCCCCCccCCHHH Q lcl|Aclame:pro 416 MAFRKALRWANQFQTGIVNDET--VEYNLNTDFPAARLTPNERAELILEWQQGAI--TFKEMRAGLRRAGVASEDDAKAE 491 (535) Q Consensus 416 ~a~~~~lr~~a~~~g~~~~~~~--~~v~~n~df~~~~~d~~~~~al~~l~~~G~i--s~et~~~~L~r~gvl~~~~~~ee 491 (535) .+|.+++++++.+++....... ..+++.+........++.++++.+++++|.+ |+++++..+ |..++ ..++ T Consensus 341 ~~l~~~~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l---~~~~~--e~~~ 415 (441) T protein:vir:80 341 QGWLSVGFLAAKALDSRVDEADFFGDVGLRWRDASTPTRAATADAVTKLVGAGILPADSRTVLEML---GLDDV--QVEA 415 (441) T ss_pred HHHHHHHHHHHHHhcCCCcccccceeeeEEeCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhC---CCCHH--HHHH Confidence 9999999999999875433221 2344444333445567899999999999975 566665433 43321 1222 Q ss_pred HHHHHHhchhhc-ccCCCcCCCCCCCcccc Q lcl|Aclame:pro 492 TEGKATVEFIAK-TAAAGKVGDAASGGTNK 520 (535) Q Consensus 492 e~~~i~~e~~~~-~~~~~~~~~~~~~~~~~ 520 (535) ++ +..++..+. ...++.. .+..+.. T Consensus 416 ~~-~e~~e~~~~~~~~~~~~---~~~~~~~ 441 (441) T protein:vir:80 416 VM-RHRAESSDPLAVLAGAI---SRQTNEV 441 (441) T ss_pred HH-HHHHHHHHHHHHHhhhh---hcccccC Confidence 11 111111111 0000000 0000111 No 63 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=99.96 E-value=1.9e-28 Score=172.59 Aligned_cols=447 Identities=9% Similarity=0.017 Sum_probs=263.9 Q ss_pred cchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhh Q lcl|Aclame:pro 3 RKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQ 82 (535) Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~ 82 (535) -+.-+|..- |..-=..+....+++..+.+.|.|.+.+..+...+.++... .+. T Consensus 1 ~~~e~~~~~-----------------------i~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~----~~~ 53 (471) T protein:vir:10 1 MEIEVIKKI-----------------------ISSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAE----NEA 53 (471) T ss_pred CCHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhccc----ccc Confidence 000000000 11111122445678888888998877665432222211100 000 Q ss_pred HHHHHHHHhh---hccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE Q lcl|Aclame:pro 83 RRRYETYLQR---AIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT 158 (535) Q Consensus 83 ~~~Y~~rl~r---A~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV 158 (535) . .....+.+ =.-.|+.+.+|+..+|++|.+||+++.++. ...+++.+. .++++...+.+++.++.+|++|++| T Consensus 54 ~-~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~~~~~~~~~l~~~~--~n~~~~~~~~~~~~~~~~G~~~~~v 130 (471) T protein:vir:10 54 K-AEDNAFRNADNRISHNWHQLLLDQKKAYALTYPPTFDVDDKKVNDMIVDVL--GDDYERISKQLCVNAGNAGIAWLHV 130 (471) T ss_pred c-ccccccccccceeccchhHHHHHhhhhhhcccCceeccCChHHHHHHHHHH--hcCHHHHHHHHHHHHhhCCeEEEEE Confidence 0 00011111 134799999999999999999999976543 445555553 2689999999999999999999999 Q ss_pred eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceE Q lcl|Aclame:pro 159 DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNY 238 (535) Q Consensus 159 D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y 238 (535) -.....+ +|-+..++|.+++-.-.+.. ...+..+ +|.....+.. +.+.+..+-+|+. .+.| T Consensus 131 ~~d~~~g------------~~~~~~~~p~~~~~i~d~~~--~~~~~~~-ir~~~~~~~~--~~~~~~~~~vy~~--~~~~ 191 (471) T protein:vir:10 131 WKDASDN------------SFRYACVDSKEVIPIYSKSL--DKKSIGV-LRVYSSIDET--DGKNYTVYEYWND--KECS 191 (471) T ss_pred EeeCCCC------------eeEEEEEcccceEEEEcCCC--CCceEEE-EEEEEeeccC--CCceeEEEEEEeC--CcEE Confidence 7653321 58899999999763322211 2223322 2222222111 2244555555543 2222 Q ss_pred EEEEEeeeccCCc------------cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 239 QVERWRRETQEEM------------YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSAD 306 (535) Q Consensus 239 ~v~~w~~~~~~~~------------~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sd 306 (535) .|+....+.. ....+.+...+...|+|+.||||.+.+.. .+.+.|.++..|..++....|+ T Consensus 192 ---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~----~~~sd~e~v~~liDa~d~~~S~ 264 (471) T protein:vir:10 192 ---FYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGLVPFIPFKNNE----IETNDLKPIKDLVDVYDKVFSG 264 (471) T ss_pred ---EEEecCCcccccccccccccccccccccccccccccCCCCceeEEEeccCC----CCCCchHHHHHHHHHHHHHHHH Confidence 2332221100 01112233344557899999999885432 3567889999999999999999 Q ss_pred HHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCC-----CCCccceeecCcchh-HHHHHHHHHHHHHHHh Q lcl|Aclame:pro 307 YEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP-----QGATAGILQITPNSV-PFEAMTHKESQMIAMG 380 (535) Q Consensus 307 l~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp-----~~~~~~~~e~~~~~l-~~~~l~~~e~qm~~lg 380 (535) +...+.+.++|+++++|.+.+...+.... +-...++.++ .++++.|+..+...- ....++.+++.|...+ T Consensus 265 ~~~~~~~~~~~~lv~~g~~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s 340 (471) T protein:vir:10 265 FVNDTDDVQEVIFVLTNYGGQDKQEFLED----LKRYKMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISG 340 (471) T ss_pred HHHHHHHhhCceeeeecCCccccchhHHH----hhcCCeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHh Confidence 99999999999999999865543322111 1112233332 345788998775433 3467888888887765 Q ss_pred hhh--hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHH Q lcl|Aclame:pro 381 ANL--LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAE 458 (535) Q Consensus 381 a~~--l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~a 458 (535) .-+ -..+.++.|+.+..................+..+|.+++++++.+++.. +...+ .+.+.+..+....+.++. T Consensus 341 ~tp~~~~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-d~~~i--~i~f~~~~p~n~~e~~~~ 417 (471) T protein:vir:10 341 QGVNPETDKLGNSSGVALKFLYSLLELKAGNMETQFRSGYATLVKMILKHLGLS-DKLKI--KQTWTRNSINNDTEMAQV 417 (471) T ss_pred CCcCCCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcee--EEEeCCCCCCCHHHHHHH Confidence 322 2334466666555566666677788888899999999999999998743 33444 444445555556778888 Q ss_pred HHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 459 LILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 459 l~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) +.++ +|.||+||++..+ +...+.++|.+||+.|-.......+... ++..+++.. T Consensus 418 ~~kl--~g~iS~et~~~~~------p~v~D~~~E~eri~~E~~~~~~~~~~~~--~~~~~~e~~ 471 (471) T protein:vir:10 418 VSTL--ATITSRENVAKSN------PIVEDWQDELRLQKAEQEGRSEKLYDME--EVEHESEVE 471 (471) T ss_pred HHHH--hccCchHHHHHhC------CCCCCHHHHHHHHHHHHHHHHhcccccC--CCCCccccC Confidence 8886 5899999987543 2333466777888776433322222111 122222222 No 64 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=99.96 E-value=1.1e-29 Score=179.31 Aligned_cols=475 Identities=13% Similarity=0.085 Sum_probs=271.5 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHH-HHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEA-IKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~-~~~~g~~YLP~~~~~~~~ 79 (535) |+-.+.. .-|++ |.-|=.-.|||+ ..+.=.+.+..|++..|.|.+... ++ ++...++ T Consensus 1 ~~~~~~~---------~~~~~--~~~~g~~~~p~~--v~~~d~~Rl~aY~l~~~~y~n~~~~~~------~~lrg~~--- 58 (527) T protein:vir:10 1 MGQDKRQ---------YGSTQ--QLRAGEANFPNA--VTDFDKARLASYRLYEDMYLTNTSDYQ------VILRGGD--- 58 (527) T ss_pred CCccccc---------cCCCc--CcCCccccCccc--CCHHHHHHHHHHHHHHHHhcCchhhee------eecCCcc--- Confidence 5543321 11222 223334567765 556667889999999999998532 21 1111111 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC----------HHHHHHHhccCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP----------PALEAIVEDIDGEGVSLDQQAKKALGYTM 149 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p----------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l 149 (535) .+=+|-++.|..+ .++.+.-.|.+| +.++.++++ -.+-++|++.+.+.-+.++ T Consensus 59 --------~~~~r~~~~ps~~--------~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~-~~~~e~l~~~~~~~~r~~~ 121 (527) T protein:vir:10 59 --------EGDQRPIYVPNGE--------KLIEAKMRFLGQGLKWEFSKKDAKVDDAIRV-LFDRENWEQKFESLKRWTE 121 (527) T ss_pred --------ccccceeeehhhH--------HhhCCcceeeccCccccccchhHHHHHHHHH-HHHHhhhHHHHHHHHHhhh Confidence 1113445555553 333333333221 123333322 2223789999999999999 Q ss_pred hhCcEEEEE-eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcc-ccee--e Q lcl|Aclame:pro 150 GFGRAAIFT-DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFE-TTYV--Q 225 (535) Q Consensus 150 ~~G~~~vlV-D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~-~~~~--~ 225 (535) ..|...++| +-|.. ..+-||.++.++|.++.-|. + ..|.+....|-+...+..+++.-. .++. . T Consensus 122 vlGDg~f~l~wD~~k----------~~~~R~~v~~~DP~~~f~~e-d-~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~ 189 (527) T protein:vir:10 122 IRGDYVLLLIGDDEK----------DEGSRLSLHEVDPSTYFPYE-D-PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQ 189 (527) T ss_pred hhcceeEEEeeccCC----------CcCCCceEeecCcceeeeee-c-CCCCCceeeEEEeeeccCCccccccceehhhh Confidence 988766655 43322 12458999999999998883 3 333444445544433444544321 1111 1 Q ss_pred EEEEEeecCCce--------EEE-----EEEeeec----cCCccccccceeeeccCCCccceeEEEEec-cCCCcCCCCc Q lcl|Aclame:pro 226 QWRVLQLNAEGN--------YQV-----ERWRRET----QEEMYYSYSKHVPTDGNGNPFKEIPFQFIG-PLDNNADIDH 287 (535) Q Consensus 226 ~~rvl~l~~~g~--------y~v-----~~w~~~~----~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~-~~~~~~~~~~ 287 (535) +|+ ++++..|. |+. ..|.+.. ...........+.++...+|+++||+|.+. .......+|. T Consensus 190 ~~~-~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~ 268 (527) T protein:vir:10 190 KYM-KTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGR 268 (527) T ss_pred hhh-hhcCcccccccCcceeeeeceeeccccccccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccCh Confidence 111 23444442 222 2332110 011112223344556788999999999774 4567889999 Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCc-chhHH Q lcl|Aclame:pro 288 PPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITP-NSVPF 366 (535) Q Consensus 288 ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~-~~l~~ 366 (535) +.|.++..+..++.++.||++.|+.+++.|+.+++|+...+ . ..+..++.||+..+|.+|+++++..+.-.+ ..... T Consensus 269 S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~vd-~-~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~ 346 (527) T protein:vir:10 269 SGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRD-S-RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQ 346 (527) T ss_pred hhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeeccccccc-c-cCCcCccccCCceeEecCCCcceeeccchhhhHHHH Confidence 99999999999999999999999999999999999998653 2 234468999999999999999999887543 22345 Q ss_pred HHHHHHHHHHHHHhhhhhccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH----cCCCCCC Q lcl|Aclame:pro 367 EAMTHKESQMIAMGANLLVKSGG--NRTFGEAQQEEASEQSILSACTKNVSMAFRKALR-----WANQF----QTGIVND 435 (535) Q Consensus 367 ~~l~~~e~qm~~lga~~l~~~~~--~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr-----~~a~~----~g~~~~~ 435 (535) .+++.+..+|...+. +.....+ ..+...+.++-.-+.+.|-+.+...+--+.-+++ |+.+| .+....+ T Consensus 347 ~h~~~L~~~l~~vA~-~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d 425 (527) T protein:vir:10 347 THMNKAEEAMQQTKG-IPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDD 425 (527) T ss_pred HHHHHHHHHHHHhhc-CCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCC Confidence 778888887765442 2221111 1122223333233333443333333323333332 33333 3332222 Q ss_pred c--eeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC-CCCCccCCHHHHHHHHHhchhhcccCCCcCCC Q lcl|Aclame:pro 436 E--TVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRA-GVASEDDAKAETEGKATVEFIAKTAAAGKVGD 512 (535) Q Consensus 436 ~--~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~-gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~ 512 (535) . ...+.+-+....+.-..+.+.++++++++|+||+++.+++|.+. ++-+++.+++++.++...++.++-.+....+- T Consensus 426 ~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGiiS~etAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~a~~~~~a 505 (527) T protein:vir:10 426 ADKKLTVTITFRDPKPVNNEKRFAQLLELWEAGLIPAKKLTEELSKIMGFELTEEDFRQATEDKKTQGIAQAEAADPFGA 505 (527) T ss_pred CccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCchHHHHHHHHHHHHHHhHHhhhhcCchhh Confidence 1 22344444444555567889999999999999999999999885 44455555566666666665555433332221 Q ss_pred CCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 513 AASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+.+.-.+.+..-.+|| T Consensus 506 -----~~~~~~g~~~~~~d~~~~ 523 (527) T protein:vir:10 506 -----QMAAEQGIPDEEDDQALN 523 (527) T ss_pred -----hhccccCCCCCCcccccC Confidence 111111122223334555 No 65 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=99.96 E-value=1.1e-29 Score=179.32 Aligned_cols=475 Identities=13% Similarity=0.087 Sum_probs=271.2 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHH-HHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEA-IKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~-~~~~g~~YLP~~~~~~~~ 79 (535) |+-.+.. .-|++ |.-|=.-.|||+ ..+.=.+.+..|++..|.|.+... ++ ++...++ T Consensus 1 ~~~~~~~---------~~~~~--~~~~g~~~~p~~--v~~~d~~Rl~aY~l~~~~y~n~~~~~~------~~lrg~~--- 58 (527) T protein:vir:10 1 MGQDKRQ---------YGSTQ--QLRAGEANFPNA--VTDFDKARLASYRLYEDMYLTNTSDYQ------VILRGGD--- 58 (527) T ss_pred CCccccc---------cCCCc--CcCCccccCccc--CCHHHHHHHHHHHHHHHHhcCchhhee------eecCCcc--- Confidence 5543321 11222 223334567765 556667889999999999998532 21 1111111 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC----------HHHHHHHhccCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP----------PALEAIVEDIDGEGVSLDQQAKKALGYTM 149 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p----------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l 149 (535) .+=+|-++.|..+ .++.+.-.|.+| +.++.++++ -.+-++|++.+.+.-+.++ T Consensus 59 --------~~~~r~~~~ps~~--------~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~-~~~~e~l~~~~~~~~r~~~ 121 (527) T protein:vir:10 59 --------EGDQRPIYVPNGE--------KLIEAKMRFLGQGLKWEFSKKDAKVDDAIKV-LFDRENWEQKFESLKRWTE 121 (527) T ss_pred --------ccccceeeehhhH--------HhhCCcceeeccCccccccchhHHHHHHHHH-HHHHhhhHHHHHHHHHhhh Confidence 1113445555553 333333333221 123333322 1223789999999999999 Q ss_pred hhCcEEEEE-eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcc-ccee--e Q lcl|Aclame:pro 150 GFGRAAIFT-DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFE-TTYV--Q 225 (535) Q Consensus 150 ~~G~~~vlV-D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~-~~~~--~ 225 (535) ..|...++| +-|.. ..+-||.++.++|.++.-|. + ..|.+....|-+...+..+++.-. .++. . T Consensus 122 vlGDg~f~l~wD~~k----------~~~~R~~v~~~DP~~~f~~e-d-~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~ 189 (527) T protein:vir:10 122 IRGDYVLLLIGDDEK----------DEGSRLSLHEVDPSTYFPYE-D-PRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQ 189 (527) T ss_pred hhcceeEEEeeccCC----------CcCCCceEeecCcceeeeee-c-CCCCCceeeEEEeeeccCCccccccceehhhh Confidence 988766655 43322 12458999999999998883 3 333444445544433444544321 1111 1 Q ss_pred EEEEEeecCCce--------EEE-----EEEeeec----cCCccccccceeeeccCCCccceeEEEEec-cCCCcCCCCc Q lcl|Aclame:pro 226 QWRVLQLNAEGN--------YQV-----ERWRRET----QEEMYYSYSKHVPTDGNGNPFKEIPFQFIG-PLDNNADIDH 287 (535) Q Consensus 226 ~~rvl~l~~~g~--------y~v-----~~w~~~~----~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~-~~~~~~~~~~ 287 (535) +|+ ++++..|. |+. ..|.+.. ...........+.++...+|+++||+|.+. .......+|. T Consensus 190 ~~~-~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~ 268 (527) T protein:vir:10 190 KYM-KTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGR 268 (527) T ss_pred hhh-hhcCcccccccCcceeeeeceeeccccccccccccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccCh Confidence 111 23444442 222 2332110 011112223344556788999999999774 4567889999 Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceeecCc-chhHH Q lcl|Aclame:pro 288 PPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITP-NSVPF 366 (535) Q Consensus 288 ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~-~~l~~ 366 (535) +.|.++..+..++.++.||++.|+.+++.|+.+++|+...+ . ..+..++.||+..+|.+|+++++..+.-.+ ..... T Consensus 269 S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~vd-~-~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~ 346 (527) T protein:vir:10 269 SGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPRD-S-RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQ 346 (527) T ss_pred hhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeeccccccc-c-cCCcCccccCCceeEecCCCcceeeccchhhhHHHH Confidence 99999999999999999999999999999999999998653 2 234468999999999999999999887543 22345 Q ss_pred HHHHHHHHHHHHHhhhhhccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH----cCCCCCC Q lcl|Aclame:pro 367 EAMTHKESQMIAMGANLLVKSGG--NRTFGEAQQEEASEQSILSACTKNVSMAFRKALR-----WANQF----QTGIVND 435 (535) Q Consensus 367 ~~l~~~e~qm~~lga~~l~~~~~--~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr-----~~a~~----~g~~~~~ 435 (535) .+++.+..+|...+. +.....+ ..+...+.++-.-+.+.|-+.+.+.+--+.-+++ |+.+| .+....+ T Consensus 347 ~h~~~L~~~l~~vA~-~PavA~G~vD~s~~~SG~ALeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d 425 (527) T protein:vir:10 347 THMTKAEEAMQQTKG-IPDIAVGVVDAAVAESGIALDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDD 425 (527) T ss_pred HHHHHHHHHHHHhhc-CCeeeeccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCC Confidence 778888887765442 2221111 1122223333233333443333333323333332 33333 3332222 Q ss_pred c--eeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC-CCCCccCCHHHHHHHHHhchhhcccCCCcCCC Q lcl|Aclame:pro 436 E--TVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRA-GVASEDDAKAETEGKATVEFIAKTAAAGKVGD 512 (535) Q Consensus 436 ~--~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~-gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~ 512 (535) . ...+.+-+....+.-..+.+.++++++++|+||+++.+++|.+. ++-+++.+++++.++...++.++-.+....+- T Consensus 426 ~~~~~~v~ivf~p~lP~D~~avie~v~tL~~aGi~S~~tAv~~L~~~~g~eD~E~E~~~I~~era~~a~a~a~A~~~~~a 505 (527) T protein:vir:10 426 ADKKLTVTITFRDPKPVNSEKRFNQLLQLWEAGLIPAKKLTEELSKIMGFELTEEDFKQATEDKKTQGIAQAEAADPFGA 505 (527) T ss_pred CccccceEEEecccCCCCHHHHHHHHHHHHHcCchhHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhHHhhhhcCchhh Confidence 1 22344444444455567889999999999999999999999885 44455555566666666665555433332221 Q ss_pred CCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 513 AASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+.+.-.+.+..-.+|| T Consensus 506 -----~~~~~~g~~~~~~d~~~~ 523 (527) T protein:vir:10 506 -----QMAAEQGIPDEEDDQALN 523 (527) T ss_pred -----hhccccCCCCCCcccccC Confidence 111111122223334555 No 66 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=99.96 E-value=8.9e-29 Score=174.38 Aligned_cols=389 Identities=11% Similarity=0.034 Sum_probs=250.8 Q ss_pred CC--CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhh Q lcl|Aclame:pro 32 LP--NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQ 109 (535) Q Consensus 32 M~--~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~ 109 (535) |- .|++--..+....+++.++.+.|.|...++ ||+.- . ...++.+. ++ ..|+++.+|++++++ T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~~~-----~~~~~----~----p~~~~~~~-~~-v~nw~~~iVds~a~r 65 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKRRAEMRYEQYAMKHVDR-----FKGIT----I----PQALSQQY-RS-ILGWCAKGVDSLADR 65 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHhccCchh-----hcchh----h----hHHHHHHH-hh-hcChhHHHHHHhHhh Confidence 65 477778888899999999999999986654 44331 1 11244333 23 359999999999999 Q ss_pred hhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhh Q lcl|Aclame:pro 110 VFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSI 189 (535) Q Consensus 110 lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~I 189 (535) +.-..-+ .-...+..+++. |+|+....++++.+|.+|+||++|.....+ +|.++.++|.++ T Consensus 66 l~~~Gf~-~~d~~l~~i~~~-----N~ld~~~~~~~~~al~yG~sf~~v~~~~dg-------------~~~i~~~sP~~~ 126 (409) T protein:vir:16 66 LVFREFE-NDDFTVNEIFEE-----NNPDIFFDSTVLSALIASCSFTYISKGEND-------------AVRLQVIEATNA 126 (409) T ss_pred ccccccc-CcchHHHHHHHh-----cChhHHHHHHHHHHHHhCceeEEEecCCCC-------------ceEEEEEcccce Confidence 8554422 123456677653 799999999999999999999999633222 489999999988 Q ss_pred hcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccc Q lcl|Aclame:pro 190 INWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFK 269 (535) Q Consensus 190 i~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (535) ...- +...+ +....+++. ++ +.- ...+.+.++.++. ++ ..++. ... +. ...|++| T Consensus 127 ~~i~-D~~~~-~~~~a~~~~----~~-d~~--~~~~~~~~~~~~~--~~--~~~~~-~~~--------~~---~~~~~~g 181 (409) T protein:vir:16 127 TGII-DPITG-LLTEGYAVL----ER-DEN--NNVVLEAHFLPDR--TD--YYYRD-SRN--------NI---SIANPTG 181 (409) T ss_pred EEEe-ecccc-cceeeeEEE----Ee-cCC--CceEEEEEEecCc--EE--EEEec-Ccc--------cc---ceecCCC Confidence 7543 43322 222222221 11 111 1223444444432 21 12221 111 11 1248999 Q ss_pred eeEEEEe-ccCCCcCCCCcchH-HHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCccccc Q lcl|Aclame:pro 270 EIPFQFI-GPLDNNADIDHPPL-LDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIP 347 (535) Q Consensus 270 ~IP~v~~-~~~~~~~~~~~ppL-~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~ 347 (535) +||+|.| +..+.....|.+.| .++..|..++.+..++...+.+|.++|++|+.|++.+. .....+..+.+.+|. T Consensus 182 ~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~d~d~----~~~~~~~~~~~~i~~ 257 (409) T protein:vir:16 182 NPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAEFYSFPQKYVTGLSDDA----EPMETWKATVSSMLQ 257 (409) T ss_pred CcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcChhheeEecCCCC----CccchhhhhhhHhhc Confidence 9999976 44455556788888 46899999999999999999999999999999986532 222346667778999 Q ss_pred CCCC---CccceeecCcchhH--HHHHHHHHHHHHHHhh---hhhcccccccchHHH-HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 LPQG---ATAGILQITPNSVP--FEAMTHKESQMIAMGA---NLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMAF 418 (535) Q Consensus 348 lp~~---~~~~~~e~~~~~l~--~~~l~~~e~qm~~lga---~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a~ 418 (535) +|++ .++++-|+.+.++. .+.++.+..++..... ..+...+.|.++.+| .............+...+..+| T Consensus 258 ~~~d~~g~~~~v~q~~~~~l~~~~~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~k~~~fg~~l 337 (409) T protein:vir:16 258 FTKDEDGDKPTLGQFTQPSMSPFTEQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRKAQRSLGAGL 337 (409) T ss_pred cCCCCCCCCceEEecCCCChhHHHHHHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9854 34677788887765 3667777777765433 233444455444444 4444555556667777789999 Q ss_pred HHHHHHHHHHcCCCCCC-c-eeEEEEecc---cCCccCCHHHHHHHHHHHhcCCC--CHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 419 RKALRWANQFQTGIVND-E-TVEYNLNTD---FPAARLTPNERAELILEWQQGAI--TFKEMRAGLRRAGVASED 486 (535) Q Consensus 419 ~~~lr~~a~~~g~~~~~-~-~~~v~~n~d---f~~~~~d~~~~~al~~l~~~G~i--s~et~~~~L~r~gvl~~~ 486 (535) ++++|++....+..... . ...+.+.|. +......++.++++.|++++|.. ..++.++. .|+-.+| T Consensus 338 ~~~~rla~~~~~~~~~~~~~~~~~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~---~g~~~~d 409 (409) T protein:vir:16 338 LNVAYLAACLRDDVPYLREQFSKTKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDL---TGIKGAE 409 (409) T ss_pred HHHHHHHHHHhcCCCccchhhccceEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHh---ccCCCCC Confidence 99999988887642111 1 122333332 22233348899999999999743 35666554 4764444 No 67 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=99.95 E-value=1.1e-27 Score=168.49 Aligned_cols=467 Identities=9% Similarity=-0.049 Sum_probs=260.0 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCcc---CH--------HH-HHHHHHHHHHHHHhcChH-HHHHHHh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQ---RV--------EF-GEMLPKWRKIMDCLSGQE-AIKAKRE 67 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~---hp--------~y-~~~~~~w~~i~d~~~G~~-~~~~~g~ 67 (535) |+..-+-+--+.+.++ +-.--++.+-..+.|.+.... .. .+ ....++++.+.+.|.|.. .+ T Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~~~i----- 74 (502) T protein:vir:48 1 MMEQTLFTDSTGQDLV-LNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDV----- 74 (502) T ss_pred CceeEEEEecchhHHH-hhcccChhHHhhhcccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc----- Confidence 4432222222222211 111122233333343321110 00 11 233567777888888842 22 Q ss_pred hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-----HHHHHHhccCCCCCCHHHHHH Q lcl|Aclame:pro 68 EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-----ALEAIVEDIDGEGVSLDQQAK 142 (535) Q Consensus 68 ~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-----~l~~l~~d~d~~G~~L~~~~~ 142 (535) +++... .. . .+. -.| .-.|+.+.+++.++|++|.++++++.++ .+..++.++-.. |+++..+. T Consensus 75 --~~~~~~--~~-~----~~~-~~k-i~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~-N~~~~~~~ 142 (502) T protein:vir:48 75 --LKSGRR--KD-N----EMA-DKR-AVHNYGRMISKFKTGYLAGNPIRVEYDDNEDNSQNDDAIKRIGRI-NDIDTHNR 142 (502) T ss_pred --cccccc--cc-c----ccc-cce-eecchHHHHHHHHhhhhcccCeeEecCCccchhHHHHHHHHHHhh-cCHhHHHH Confidence 111110 00 0 010 113 3379999999999999999999986542 233444444333 68999999 Q ss_pred HHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccc Q lcl|Aclame:pro 143 KALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETT 222 (535) Q Consensus 143 ~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~ 222 (535) .+++.++.+|++|++|..+..+ +|-+..++|.+++---.+.+. .+.+..|++ ......+ . T Consensus 143 ~~~~~~~~~G~a~~~v~~dedg-------------~~~i~~~~p~~~~~vydd~~~-~~~~~~ir~--~~~~~~~----~ 202 (502) T protein:vir:48 143 NLIRDLSQTGRAYEVIYRSEYD-------------ETRIKRLSPLETFVIYDNSLE-DNSIAAVRY--YNRGTLQ----N 202 (502) T ss_pred HHHHHHhhcCeEEEEEEeCCCC-------------ceEEEEEcccceEEEEcCCCC-CceEEEEEE--EEEeecC----C Confidence 9999999999999999765443 378888999887532111111 222322332 2222111 1 Q ss_pred eeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHh Q lcl|Aclame:pro 223 YVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYR 302 (535) Q Consensus 223 ~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~ 302 (535) .+..+.+++.+ ..|+ |.. . +.+..+....|+++.||||.+.... .+.+.+.++..|-.++.+ T Consensus 203 ~~~~~~iyt~~--~i~~---~~~--~-------~~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~~liDa~d~ 264 (502) T protein:vir:48 203 AKDVVEIYTNQ--HIYT---LDA--S-------DSFNEISVTPHAFGTVPITEFLNNA----DGIGDYETELYLIDLYDS 264 (502) T ss_pred cEEEEEEEeCC--eEEE---EEe--C-------CceeeccceecCCCccceEEecCCC----CCCCchhhhHHHHHHHHH Confidence 23344444432 2222 211 1 1123344566999999999875432 356778899999999999 Q ss_pred hHHHHHHHHHHhcCceeEeeCCCCccchhcc----CcceeeecCcc-cccCCCCCccceeecCcchhH-HHHHHHHHHHH Q lcl|Aclame:pro 303 NSADYEEMAFVAGQPTAFFTGLTKDWVEDVF----KDFKVHLGSRA-IIPLPQGATAGILQITPNSVP-FEAMTHKESQM 376 (535) Q Consensus 303 ~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~----~~~~i~iG~~~-~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm 376 (535) ..|++...+.+.+.|+++++|......+... ....+.+.... ....+++++++|+...-..-. ...++.+.++| T Consensus 265 ~~S~~~~~~~~~~~~~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I 344 (502) T protein:vir:48 265 AESDTANHMSDMADAILAIYGDLALPQGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDI 344 (502) T ss_pred HHHHHHHHHHHhcCceeeeecCcccccccchhhhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHH Confidence 9999999999999999999996543222111 11112221111 111234678888876644333 35678888888 Q ss_pred HHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---ceeEEEEecccCCcc Q lcl|Aclame:pro 377 IAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND---ETVEYNLNTDFPAAR 450 (535) Q Consensus 377 ~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~---~~~~v~~n~df~~~~ 450 (535) ..++.-+- ...+++.|+.+..............+...++.++.+++++++.+++..... +...+.+.+...... T Consensus 345 ~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~i~f~~~~p~ 424 (502) T protein:vir:48 345 HVFTNTPDMSDNHFSGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESRLKITFTPNLPK 424 (502) T ss_pred HHHhCCCCcCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCc Confidence 77664331 222355666655666667777788888999999999999999987643221 222344444444444 Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhh--cccCCCcCCCCCCCccccccc---cc Q lcl|Aclame:pro 451 LTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIA--KTAAAGKVGDAASGGTNKAKL---NN 525 (535) Q Consensus 451 ~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~--~~~~~~~~~~~~~~~~~~~~~---~~ 525 (535) ...+.++++.++ +|.||++|+++.| +.+ ++.++|.+||..|-.. .....+...+....+++..+. .. T Consensus 425 d~~e~a~~~~kl--~g~iS~et~l~~l---~~v---~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~ 496 (502) T protein:vir:48 425 SLYEQVSILNDL--GGQVSQETALSLS---GLV---ENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDD 496 (502) T ss_pred CHHHHHHHHHHH--hccCcHHHHHHhC---CCC---CCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcC Confidence 567788888887 5899999988754 333 3456778888665322 111122222211111111111 11 Q ss_pred ccCCCC Q lcl|Aclame:pro 526 GNGGGN 531 (535) Q Consensus 526 ~~~~~~ 531 (535) +...-+ T Consensus 497 ~~~~~~ 502 (502) T protein:vir:48 497 FERVYE 502 (502) T ss_pred cCCCCC Confidence 111111 No 68 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=99.95 E-value=2.8e-27 Score=166.19 Aligned_cols=469 Identities=9% Similarity=-0.044 Sum_probs=261.4 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCc---cCHH--------H-HHHHHHHHHHHHHhcCh-HHHHHHHh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGY---QRVE--------F-GEMLPKWRKIMDCLSGQ-EAIKAKRE 67 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~---~hp~--------y-~~~~~~w~~i~d~~~G~-~~~~~~g~ 67 (535) |...-- +--++|+-+ +-.--++.+-..+.+++... ...+ + ....++|+.+.+.|.|. +.+.. T Consensus 1 ~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~--- 75 (501) T protein:vir:27 1 MEQTLF-TDSTGQDLV-LNLRFHRESRIRYRADNLEELMVNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLQ--- 75 (501) T ss_pred CCceeE-Eeccchhhh-hhcccChhHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc--- Confidence 221110 111222211 11112222333444442221 1111 1 23456788888888884 22211 Q ss_pred hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-----HHHHHHhccCCCCCCHHHHHH Q lcl|Aclame:pro 68 EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-----ALEAIVEDIDGEGVSLDQQAK 142 (535) Q Consensus 68 ~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-----~l~~l~~d~d~~G~~L~~~~~ 142 (535) +... .+ . ++. -.|. -.|+.+.+|+..+|++|.++|+++.++ .+..++.++-.. ++++.+.. T Consensus 76 ----~~~~--~~-~----~~~-~~ki-~~n~~k~Ivd~~~~yl~g~p~~~~~~d~~~~~~~~~~l~~~~~~-n~~~~~~~ 141 (501) T protein:vir:27 76 ----FGRR--KD-R----EMA-DKRA-VHNYGRMISKFKTGYLAGNPIRVEYDDNDNNSQNDDTIKRIGRI-NDIDSHNR 141 (501) T ss_pred ----cCcc--Cc-c----ccc-ccee-ccchHHHHHHHHhhhhcccCeeEecCCccchHHHHHHHHHHHHh-cChhHHHH Confidence 1000 00 0 000 1132 369999999999999999999987542 234444444333 68999999 Q ss_pred HHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccc Q lcl|Aclame:pro 143 KALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETT 222 (535) Q Consensus 143 ~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~ 222 (535) .+++.++.+|++|++|-.+..+ +|.+..++|.+++-.--+.+ .++.+..|++ ......+ . T Consensus 142 ~~~~~~~~~G~a~~~vy~ded~-------------~~~i~~~~p~~~~~v~d~~~-~~~~~~~ir~--~~~~~~~----~ 201 (501) T protein:vir:27 142 TLIRDLSQTGRAYEVIYRNEYD-------------ETRIKRLNPLETFVIYDNSL-EDNSIAAVRY--YNRGTLQ----N 201 (501) T ss_pred HHHHHHhhCCeEEEEEEeCCCC-------------ceEEEEEccceeEEEecCCC-CCceEEEEEE--EEeeecC----C Confidence 9999999999999999654433 48899999999864322222 2233333332 2222221 2 Q ss_pred eeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHh Q lcl|Aclame:pro 223 YVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYR 302 (535) Q Consensus 223 ~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~ 302 (535) .+..+.+++.+ ..| .|... + .+..++...|++|.||||.+.+.. .+.+.+.++..|-.++.+ T Consensus 202 ~~~~~~vyt~~--~v~---~~~~~--~-------~~~~~~~~~~~~g~vPvv~~~nn~----~g~sd~e~v~~liDa~d~ 263 (501) T protein:vir:27 202 AKDVVEIYTNE--HIY---TLDAS--D-------DFNEISVTTHAFGTVPITEFLNNV----DGIGDYETELYLIDLYDS 263 (501) T ss_pred cEEEEEEEeCC--eEE---EEEeC--C-------ceeeccccccCCCcccEEEecCCC----CCCCchhhhHHHHHHHHH Confidence 33445555542 233 23221 1 122344567999999999875432 367779999999999999 Q ss_pred hHHHHHHHHHHhcCceeEeeCCCCccchhcc----CcceeeecCcccc-cCCCCCccceeecCcchhH-HHHHHHHHHHH Q lcl|Aclame:pro 303 NSADYEEMAFVAGQPTAFFTGLTKDWVEDVF----KDFKVHLGSRAII-PLPQGATAGILQITPNSVP-FEAMTHKESQM 376 (535) Q Consensus 303 ~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~----~~~~i~iG~~~~~-~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm 376 (535) ..|++...+.+.++|+++++|...+...+.. ....+.+...... ..+.+++++|+..+-..-. ...++.+.+.| T Consensus 264 ~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I 343 (501) T protein:vir:27 264 AESDTANHMSDMADAILAIYGDLALPKGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDI 343 (501) T ss_pred HHHHHHHHHHHhcCceeeeecCccCCcccchhhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHH Confidence 9999999999999999999996543322110 1112222222111 2234567888876543323 34577777777 Q ss_pred HHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC---ceeEEEEecccCCcc Q lcl|Aclame:pro 377 IAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVND---ETVEYNLNTDFPAAR 450 (535) Q Consensus 377 ~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~---~~~~v~~n~df~~~~ 450 (535) ..++..+- ..-+++.|+.+..............+...++.+|++++++++.+++..... ....+++.+...... T Consensus 344 ~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~~~d~~~i~v~f~~~~p~ 423 (501) T protein:vir:27 344 HIFTNIPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFKDFDESLLKITFTPNLPK 423 (501) T ss_pred HHHhCCcccCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccceEEeCCCCCc Confidence 66654331 222355666655566666777788888999999999999999987643221 222344544444455 Q ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcc--cCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 451 LTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKT--AAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 451 ~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) ..++.++++.++ +|.||++|+++.| +..++.++|++||.+|-.... ...+..++..+..++..+.+.+.- T Consensus 424 n~~e~ad~~~kl--~g~iS~et~l~~l------~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~ 495 (501) T protein:vir:27 424 SLNEQVSILTGL--GGQVSQETALSLS------GLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDD 495 (501) T ss_pred CHHHHHHHHHHH--hccCcHHHHHHhC------CCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCcccc Confidence 567788888887 5899999988643 222346777778866633211 111212222122222222211110 Q ss_pred CCCCCCC Q lcl|Aclame:pro 529 GGNQAGN 535 (535) Q Consensus 529 ~~~~~~~ 535 (535) ... |-- T Consensus 496 ~e~-~~~ 501 (501) T protein:vir:27 496 FER-AYE 501 (501) T ss_pred ccc-cCC Confidence 000 000 No 69 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=99.95 E-value=6.2e-27 Score=164.25 Aligned_cols=454 Identities=10% Similarity=0.007 Sum_probs=262.8 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCC-CCccC-HHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPN-VGYQR-VEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSR 78 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~-v~~~h-p~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~ 78 (535) |--+ +|+...+.+.+|-. +.--.++ |..-. -......++|+.+.+.|.|....--....+.+.. T Consensus 1 ~~~~---~~~~~~~~~~~~~~------~~~l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~~~~~----- 66 (506) T protein:vir:94 1 MDYD---LTEHKQANLIYQES------LENLTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSRRHED----- 66 (506) T ss_pred CCcc---hhhhhcceeecccc------hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccc----- Confidence 5544 66777777777532 1111111 11100 0124467889999999999753210001111110 Q ss_pred ChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-----HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCc Q lcl|Aclame:pro 79 DEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-----PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGR 153 (535) Q Consensus 79 ~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-----~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~ 153 (535) ++. -.|. -.|+.+.+++..+|++|.+++++... +.+..++++ ++++.....+++.++.+|+ T Consensus 67 -------~~~-~~ki-~~n~~~~Iv~~~~~~l~G~p~~~~~~d~~~~~~l~~~~~~-----N~~~~~~~~~~~~~~~~G~ 132 (506) T protein:vir:94 67 -------GKA-DHRA-THSFAKYIADFQTSYSVGNPINVKLPDDGSNSGFDTFNKA-----NDVDAENYDLFLDMSRYGR 132 (506) T ss_pred -------cCC-ccee-ecchHHHHHHHhhhhhcccCceeecCcchHHHHHHHHHhc-----cCHhHHHHHHHHHHHhcCe Confidence 000 0122 36999999999999999999998654 234445543 6899999999999999999 Q ss_pred EEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeec Q lcl|Aclame:pro 154 AAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLN 233 (535) Q Consensus 154 ~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~ 233 (535) +|++|..+..+ +|-+..++|.+++-.--+.+. ..+..++-.......++.-.......+.+++.. T Consensus 133 a~~~v~~ded~-------------~~~i~~~~p~~~~~v~dd~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~yt~~ 197 (506) T protein:vir:94 133 AYEYVYRGEDN-------------EEHLAKLDPLDTFVIYSTDVD--PKPIMAVRYHQIELVDDNQVSTINYVPETWTAD 197 (506) T ss_pred EEEEEEecCCC-------------eeEEEEEcccceEEEecCCCC--CceEEEEEEEeeeeccCCceeEEEEEEEEEeCc Confidence 99999765433 488999999998653322222 233333222222222222111222333333332 Q ss_pred CCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 234 AEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFV 313 (535) Q Consensus 234 ~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~ 313 (535) ++..|..... . +.......|+|+.||||.+.... .+.+.+.++..|..++....|++...+.+ T Consensus 198 -----~~~~~~~~~~---~-----~~~~~~~~~~~g~vPvv~~~n~~----~~~sd~e~~~~liDa~d~~~S~~~~~~~~ 260 (506) T protein:vir:94 198 -----TYTLYNPTPI---M-----GKMQVDTTKPITTFPVVEFKNSN----FRLGDFENVLPLIDLYDAAQSDTANYMTD 260 (506) T ss_pred -----eEEEeccccC---c-----cceeccccccCCccceEEecCCC----CCCCchhhhHHHHHHHHHHHHHHHHHHHH Confidence 1223322111 1 22334456999999999775432 24677899999999999999999999999 Q ss_pred hcCceeEeeCCCCccchhc----------------------------cCcceeeecCccccc-CCCCCccceeecCcchh Q lcl|Aclame:pro 314 AGQPTAFFTGLTKDWVEDV----------------------------FKDFKVHLGSRAIIP-LPQGATAGILQITPNSV 364 (535) Q Consensus 314 ~~~P~~~~~G~~~~~~~d~----------------------------~~~~~i~iG~~~~~~-lp~~~~~~~~e~~~~~l 364 (535) .+.|+++++|....+.... .....+.+.+..... .+.+++++|+..+...- T Consensus 261 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 340 (506) T protein:vir:94 261 LNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAKYINKTYDVV 340 (506) T ss_pred hhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccceeeeecCCHH Confidence 9999999999653222100 001112222221111 22356788887765433 Q ss_pred H-HHHHHHHHHHHHHHhhhhh---cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCce Q lcl|Aclame:pro 365 P-FEAMTHKESQMIAMGANLL---VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGI---VNDET 437 (535) Q Consensus 365 ~-~~~l~~~e~qm~~lga~~l---~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~---~~~~~ 437 (535) . ...++.+.++|...+.-+- ...+++.|+.+..............+...++.+|++++++|+.+++.. .+.+. T Consensus 341 ~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~~d~ 420 (506) T protein:vir:94 341 GSEAYKKRVAGDIHKFSHTPDLTDENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENSIHGDWTFDP 420 (506) T ss_pred HHHHHHHHHHHHHHHHhCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc Confidence 3 4567888888877654331 122345555555556666677778888889999999999999886532 12222 Q ss_pred eEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccC---CC------ Q lcl|Aclame:pro 438 VEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAA---AG------ 508 (535) Q Consensus 438 ~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~---~~------ 508 (535) ..+++.+.........+.++++.++ +|.||++|++..| +..++.++|.+||..|-...... .+ T Consensus 421 ~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l------p~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~ 492 (506) T protein:vir:94 421 QELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQL------PGVTNPQDIVDMMKEQSANGDYSFDQNGVISNDG 492 (506) T ss_pred ccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhC------CCCCCHHHHHHHHHHHHHHHhhcchhhcCCCccc Confidence 2345555555566667888988887 5899999998643 33334566777776653221100 00 Q ss_pred cCCCCCCCcccccccc Q lcl|Aclame:pro 509 KVGDAASGGTNKAKLN 524 (535) Q Consensus 509 ~~~~~~~~~~~~~~~~ 524 (535) .+.....+.+.+= + T Consensus 493 ~~~~~~~~~~~e~--~ 506 (506) T protein:vir:94 493 QTNTTATQTDEEV--R 506 (506) T ss_pred CccccccccccCC--C Confidence 0011111111111 1 No 70 >protein:vir:7430 Length: 563 # NCBI annotation: gp7 # Family: family:all:6920 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818545;genbank:gi:29566982;genbank:GeneID:1260216 Probab=99.94 E-value=1.3e-26 Score=162.52 Aligned_cols=483 Identities=13% Similarity=0.027 Sum_probs=266.1 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |+-.+. -.-|++.--..|.... ..+.-.+.+..|++..|.|.|...= |=|-..+. T Consensus 1 m~~~~~---------q~~p~~~~fp~~~a~w------V~~~D~~RlaaY~ly~d~y~n~~~e------l~~il~G~---- 55 (563) T protein:vir:74 1 MPYNHK---------QYDPAKPFLRGGDDNI------VDENDKNRVRAYDLYENIYLNSAET------LKLVLRGD---- 55 (563) T ss_pred CCcccc---------ccCCCccccccccccc------CCHHHHHHHHHHHHHHHhhcCchhh------hhhhcCCC---- Confidence 443221 1223322112222222 3444567899999999999995431 11111111 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH---------HHHHHhccCCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA---------LEAIVEDIDGEGVSLDQQAKKALGYTMGF 151 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~---------l~~l~~d~d~~G~~L~~~~~~~~~~~l~~ 151 (535) -.|-++.|+-+.+|++.+ +++.++..+.+|+. ++.++++.= +-.+|.+.+.+..+.++.. T Consensus 56 ---------dr~~~~~ps~r~~V~~~~-~~Lg~~~~~~Ve~~~~de~~~~avq~~Lr~~~-~~e~l~~~~~~~~r~a~vl 124 (563) T protein:vir:74 56 ---------DSVPILMPSGRKIVEAVH-RFLGVGFDYLVEPDMGDEGIRQSLNAYFRTTF-KREAIKAKFTSNKRWGLIR 124 (563) T ss_pred ---------ceeeeccchHHHHHHHHH-HhcCCCcEEecCccccCcchHHHHHHHHHHHH-HHhhhHHHHHHHHHhhhhh Confidence 145566778888999944 67788877755543 333333321 2368999999999999998 Q ss_pred CcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE--E Q lcl|Aclame:pro 152 GRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR--V 229 (535) Q Consensus 152 G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r--v 229 (535) |...++|-.++ ++..+.||-++.|+|.++.-|.-.. +....-.|.+.--+..++|+ . +.+-+.| . T Consensus 125 GDgvf~l~wDp---------~K~~g~R~rv~~vDP~~~fp~~dpd--~v~g~~~v~v~~~~~~pdd~-~-~~~~r~~~~~ 191 (563) T protein:vir:74 125 GDAHFYIHADP---------NKKAGERISVDEVDPRQIFLIEDGS--TVVGFHMVDIVQDFRSPDDP-S-KKLARRRTFR 191 (563) T ss_pred cceeEEEeecc---------ccccCCCceEeecCCceeeeccCCC--CcccceeeecccCCCCCcch-h-ccceeeeeee Confidence 87666663322 2334668999999999998876432 22111122222122334443 2 2333333 3 Q ss_pred EeecCCceEEEEE------Eeee-----ccCC-cc--cccc-----ceeeeccCCCccceeEEEEeccC-CCcCCCCcch Q lcl|Aclame:pro 230 LQLNAEGNYQVER------WRRE-----TQEE-MY--YSYS-----KHVPTDGNGNPFKEIPFQFIGPL-DNNADIDHPP 289 (535) Q Consensus 230 l~l~~~g~y~v~~------w~~~-----~~~~-~~--~~~~-----~~~~~~~~~~~l~~IP~v~~~~~-~~~~~~~~pp 289 (535) ++++.+|.|+..+ |.-. .... .. ...+ ....++.-.+|+++||+|.+++. .....+|.+- T Consensus 192 ~~lndeg~~~~~~~~dae~w~lg~wd~r~~~~~~~~~~~~~~~~~~~d~e~~~LP~pi~~iPiv~~~tip~~~s~WG~S~ 271 (563) T protein:vir:74 192 RVRNDEGMFTGRISSELTHWTLGNWDDRGAISDEQARRKEQVRSAQHDEEEEELPEPISQLPLYRWRNKPPQNSSWGTSQ 271 (563) T ss_pred eeeCCCCCccceeeeccchhccccccccCccchhhhcccchhhhhhhhchhhhccccccCccEEEcCCCCCcccccchhh Confidence 5666777754333 5321 0000 00 0000 01122344689999999987544 5678899999 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCCccceee-cCcc---hhH Q lcl|Aclame:pro 290 LLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQ-ITPN---SVP 365 (535) Q Consensus 290 L~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e-~~~~---~l~ 365 (535) |.+|-.+..++++..+|.+.++.+++.|+.++.|....+. .........||+..+|.+|++.+.++++ +++. +.. T Consensus 272 La~ll~~~~eLn~~~Td~s~i~~~tG~pi~vl~~~~p~d~-~~g~~~~w~vgpG~i~El~~~~~~g~l~~v~g~~~l~~~ 350 (563) T protein:vir:74 272 LEGMETLAYALNQSLTDEDATIVFQGLGMYVTNASAPVDP-NTGELTDWNIGPMQIVEIAGNRNDNYFERVSGVQDVSPF 350 (563) T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhcCCCeEEecccccccc-ccccccccccCCceeEeccCCccccceeeecchhhhHHH Confidence 9999999999999999999999999999999998664332 2223344679999999999887766654 4552 334 Q ss_pred HHHHHHHHHHHHHHhhhhhccccc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHH------ Q lcl|Aclame:pro 366 FEAMTHKESQMIAMGANLLVKSGG--NRTFGEAQQEEASEQSILSACTKNVSMAFRK------------ALRWA------ 425 (535) Q Consensus 366 ~~~l~~~e~qm~~lga~~l~~~~~--~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~------------~lr~~------ 425 (535) +.+|+++..+..+-.+++.....+ ..+...+.++-.-+.+.|-+.....+--|.- .|..+ T Consensus 351 q~Hm~~l~eral~~~s~tPavA~G~vD~~~~~SGiALeL~L~PL~a~~~ek~l~l~~~mr~~r~~~~~~lL~~~erl~~~ 430 (563) T protein:vir:74 351 QDHMKWIDEKGIAEGSGTPEVAIGRVDVTSAESGISLELQLKPLLAANEEKELEMIVVMDQFLHDWMTMWLPAYESDFQE 430 (563) T ss_pred HHHHHHHHHHHHHhhccCcceeecccccccccchhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh Confidence 678888887655554444432222 2222333333333333333322222221111 12111 Q ss_pred ---HHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchh- Q lcl|Aclame:pro 426 ---NQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFI- 501 (535) Q Consensus 426 ---a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~- 501 (535) ++|.|...-+....+++-+......-.++-+...+.|+++|+||++|..++|.+.|...++...+ ...|+.+-+ T Consensus 431 g~~~~~~g~~~~~~~~~v~ivf~p~~P~d~~~vv~~~~tl~~aGiiSretAv~~L~~~g~~~pdae~e--~~~ie~~~i~ 508 (563) T protein:vir:74 431 QDGSRPFASADLLNECSVVCIFADPMPVNKTQVTQDTLLLQQAHLILRKMAVAKLRSIGWEYPEVDDQ--GNALTDDDIA 508 (563) T ss_pred hcccccccccccCCceEEEEEeCCCCCccHHHHHHHHHHHHHcCchhHHHHHHHHHhCCCCCCcHHHH--HhhcCHHHHH Confidence 23555443344444454443333333467788899999999999999999999988765553322 222222111 Q ss_pred ---hcccCCCcCCCCCCCcccccccc-cccCCCC--CCCC Q lcl|Aclame:pro 502 ---AKTAAAGKVGDAASGGTNKAKLN-NGNGGGN--QAGN 535 (535) Q Consensus 502 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~ 535 (535) .+-+.+-.+.+....++.+.... .-.-|+| +-|| T Consensus 509 ~~~~a~a~ad~~~~~~a~~~~g~~~~~~dd~g~p~~~~~~ 548 (563) T protein:vir:74 509 DMLLAEAEADASLGLSAMDNGGAGEQQFDDQGNPIDQFGN 548 (563) T ss_pred HHHHHHhhccCcccceecccCCCCcccccccCCchhHcCC Confidence 11111112222111111111110 0001222 3344 No 71 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=99.94 E-value=5.6e-25 Score=153.52 Aligned_cols=464 Identities=10% Similarity=0.014 Sum_probs=255.0 Q ss_pred hhcceecCCCCCCCCcccccCCCCCccCH---------HHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhh Q lcl|Aclame:pro 12 VQSKVLIPPQAPPTSGLGPSLPNVGYQRV---------EFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQ 82 (535) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~M~~v~~~hp---------~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~ 82 (535) +-+++ -+|+ +...-. ....+.++.+.+++.|.|.+.+..+...+.-... ... T Consensus 1 ~~~~~-------------~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~----~~~- 61 (537) T protein:vir:78 1 MTSPL-------------LNKP-IDQLGGLLNTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKG----QLR- 61 (537) T ss_pred CCccc-------------cccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccc----ccc- Confidence 11111 1222 111110 0134457777888889998776543322211100 000 Q ss_pred HHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH----HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE Q lcl|Aclame:pro 83 RRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP----ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT 158 (535) Q Consensus 83 ~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~----~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV 158 (535) .-.++. =.| .-.|+.+.+|+..+|++|.+||+++..+ .+..++.... +++++.....+++.++.+|++|.++ T Consensus 62 ~d~~~~-nnk-i~~nf~k~Ivd~~~~yl~G~Pv~~~~~d~~~~e~~~~l~~~~--~~~~~~~~~el~~~~s~~G~ay~~~ 137 (537) T protein:vir:78 62 EDNYAS-NVK-ISHGFFTELVDQLAQYLLSNGVEVKVKDEDNTQLDEILQEYF--DEDFQATIDTLVTNASKKGFEGIFA 137 (537) T ss_pred cccccc-ccc-cccchHHHHHHHHhhhhcccCceeecCcchhHHHHHHHHHHh--hccHHHHHHHHHHHHhhcCeeEEEe Confidence 000100 012 3369999999999999999999997542 2333333332 3677888889999999999999999 Q ss_pred eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceE Q lcl|Aclame:pro 159 DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNY 238 (535) Q Consensus 159 D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y 238 (535) ..+..+. +.+..++|++++-. ++..+ .....+++.+...........+.+..+-+++.+. .| T Consensus 138 y~de~~~-------------~~~~~i~p~~~~pv-~d~~~--~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~--i~ 199 (537) T protein:vir:78 138 RTTSEGK-------------LKFQTVDGLTLIPV-FDDYG--VLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEA--VC 199 (537) T ss_pred eecCCCc-------------eEEEEEccceeEEE-EcCCC--CceeEEEEEeeeeccccccCcceEEEEEEEcCCc--EE Confidence 8776553 77888999886432 11111 2233344444443333333445555555555432 21 Q ss_pred EEEEEeeeccCCc------------------------cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHH Q lcl|Aclame:pro 239 QVERWRRETQEEM------------------------YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLC 294 (535) Q Consensus 239 ~v~~w~~~~~~~~------------------------~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA 294 (535) .|+....+.. ..............|+|+.||||.+.... .+.+.|.++. T Consensus 200 ---~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~f~nn~----~~~sd~e~v~ 272 (537) T protein:vir:78 200 ---YYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFEDTDGYQVLGRSYSKFPFQLLYNNK----DGMSDVKRVK 272 (537) T ss_pred ---EEEecCCcccccccccccccccccceeeeccccccccccccccccccccCCcceeEEEeccCc----cCCCchhhhH Confidence 2222111100 00011112233456899999999875533 3577899999 Q ss_pred HHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCC-CCCccceeecCcchhHH-HHHHHH Q lcl|Aclame:pro 295 EVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLP-QGATAGILQITPNSVPF-EAMTHK 372 (535) Q Consensus 295 ~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp-~~~~~~~~e~~~~~l~~-~~l~~~ 372 (535) .|..+.....|++...+...+.|+++++|.+.+...+... .+....++.++ .++++.|+..+-..-.. ..++.+ T Consensus 273 ~LiDayd~~~S~~an~~~~~~~~ilvi~g~~~~~~~~~~~----~l~~~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L 348 (537) T protein:vir:78 273 SIIDDYDVMNCFLSNNLQDFSEAIYVVKGFSGDSTDKLRQ----NIKAKKMIGVNGDNAGMEIQTVSIPYEARKAKMDID 348 (537) T ss_pred HHHHHHHHHHHhhhhHHHHhcCceeeeecCCCccchhHHH----HHhhcCceeecCCCCceeEEEecCCHHHHHHHHHHH Confidence 9999999999999999999999999999976544322211 12122344444 57889999877654433 568888 Q ss_pred HHHHHHHhhhh--hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----CCCceeEEEEeccc Q lcl|Aclame:pro 373 ESQMIAMGANL--LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGI----VNDETVEYNLNTDF 446 (535) Q Consensus 373 e~qm~~lga~~--l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~----~~~~~~~v~~n~df 446 (535) .+.|...+--. -....++.|+.+..............+..-+..++++.++++..++... .+...+.|. +.. T Consensus 349 ~~~I~~~s~~~~~~~~~~gn~SGvAlk~~~~~l~~ka~~ke~~f~~~l~~~~~~i~~~~~~~~~~~~d~~~i~i~--f~~ 426 (537) T protein:vir:78 349 VENIYRSGMGFNSTAVGDGNVTNVVIKSRYTLLAMKARKMETSLRKVLRWCADMVVSDIALRGLGEYDSNDICFE--IEP 426 (537) T ss_pred HHHHHHhcCCCCCccccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccceeeEE--ecc Confidence 88887765222 2233455555444455555555566667778888888888888876532 122233333 333 Q ss_pred CCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHh-------------chhhcc-cCCCcCCC Q lcl|Aclame:pro 447 PAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATV-------------EFIAKT-AAAGKVGD 512 (535) Q Consensus 447 ~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~-------------e~~~~~-~~~~~~~~ 512 (535) ....-..+.++.+.++++.|.||++|++..+ ..+++ .|.++...++ +...+. ...+...+ T Consensus 427 ~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~---p~vdd---~e~ek~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (537) T protein:vir:78 427 HVLANELDIATTRKTEAETEALKIGNIMTVA---PRIGD---DETLKLIAEELDLDYNELKDALAEQDAQSLDVSPDVQA 500 (537) T ss_pred CCCCCHHHHHHHHHHHHhcCcchHHHHHHhC---CCCCC---HHHHHHHHHHHHhhhhhhhhhhhhhcccccCcCcchhh Confidence 3334446778888899999999999988654 43332 2222111100 000000 00000000 Q ss_pred CCCCccc------------ccccccccCCCCCCCC Q lcl|Aclame:pro 513 AASGGTN------------KAKLNNGNGGGNQAGN 535 (535) Q Consensus 513 ~~~~~~~------------~~~~~~~~~~~~~~~~ 535 (535) ...+.+. ...-|++-.|-|.+|- T Consensus 501 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 535 (537) T protein:vir:78 501 MLDGLPVNANQPPVDPNQPVADPNVVPPTDPNAVP 535 (537) T ss_pred hcCCCCCCCCCCCCCccCCCCCCCCCCCCCCccCC Confidence 0001011 1111233333333333 No 72 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=99.89 E-value=4.9e-21 Score=131.91 Aligned_cols=464 Identities=11% Similarity=0.043 Sum_probs=251.6 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccC--CCCCccCHHHHHHHHHHHHHHHHhcChH-HHHHHHhhhCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSL--PNVGYQRVEFGEMLPKWRKIMDCLSGQE-AIKAKREEYLPMPSVDS 77 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M--~~v~~~hp~y~~~~~~w~~i~d~~~G~~-~~~~~g~~YLP~~~~~~ 77 (535) |-.+-.+--|++-.|..+ ..-|.... ++|. .|+++......|+ .+|.|.. .+......+-++ T Consensus 1 m~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~-~~~~~~~~i~~~~---~~Y~g~~~~~~~~~~~~~~~----- 65 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGL------LKSLKDVTDHKKVN-ANDEDYKYIDMWK---RLYQGNYAEWHNLNYEHNGN----- 65 (499) T ss_pred ChhHHHHHHHHHHHHhcc------ccchhhhhcCCCCc-CCHHHHHHHHHHH---HHhcCCcchhhccccccCCC----- Confidence 655444333444333211 11122222 2233 4778888888886 5688863 333211111000 Q ss_pred CChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEE Q lcl|Aclame:pro 78 RDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAI 156 (535) Q Consensus 78 ~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~v 156 (535) ...+ .+ .-.|+.+.+++.+++++|.++|++++.+. ...+++++-. -+++...+..++..++.+|.+++ T Consensus 66 --------~~~~-~~-~s~n~~~~iv~~~a~~l~~ep~~i~~~d~~~~e~l~~~~~-~n~f~~~~~~~~~~a~~~G~~~~ 134 (499) T protein:vir:80 66 --------PVNR-RQ-LSMNLPKVTAKYMSKLLFNEKVKINIDDETAEEFVLNVLK-TNGFTKNMERYIEYGEAMGGFVI 134 (499) T ss_pred --------cccc-ce-eecchHHHHHHHHHHhhhCCcceEeeCCHHHHHHHHHHHh-hccHHHHHHHHHHHHhhcCcEEE Confidence 0001 11 12599999999999999999999987543 3333333221 26799999999999999999999 Q ss_pred EEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEE--EEEeecC Q lcl|Aclame:pro 157 FTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQW--RVLQLNA 234 (535) Q Consensus 157 lVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~--rvl~l~~ 234 (535) .|.+...+ +|-+..++|++++--..+ . ..++.+++.+.+...+ +..+++ ..+.-+. T Consensus 135 ~~~~D~~~-------------~~~i~~v~a~~~~Pi~~d--~--~~~~~~~f~~~~~~~~-----~~y~~lE~h~~~~~~ 192 (499) T protein:vir:80 135 KVYHDGNK-------------NVKVSFATADCMYPLSND--S--ENVDECLIANSFHKNN-----KYYKLLEWNEWKGEK 192 (499) T ss_pred EEEECCCC-------------cEEEEEEcCCceEEEEec--C--CCeEEEEEEEEEeecC-----eEEEEEEEEEecccc Confidence 99876544 488999999998752222 1 2577777776654422 111111 1122222 Q ss_pred CceEEEE--EEeeeccCCcccccc-----ceeeeccCCCccceeEEEEeccC-----CCcCCCCcchHHHHHHHHHHHHh Q lcl|Aclame:pro 235 EGNYQVE--RWRRETQEEMYYSYS-----KHVPTDGNGNPFKEIPFQFIGPL-----DNNADIDHPPLLDLCEVNIGHYR 302 (535) Q Consensus 235 ~g~y~v~--~w~~~~~~~~~~~~~-----~~~~~~~~~~~l~~IP~v~~~~~-----~~~~~~~~ppL~dLA~ln~~hy~ 302 (535) .+.|+++ .|+.+.....+.... +..+....-+.++..||+++... +.+...|.+.|.++.++..++.. T Consensus 193 ~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~ 272 (499) T protein:vir:80 193 EEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDL 272 (499) T ss_pred eeeEEEEEEEEeccCccccCcccchhhhccCcCCceeecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHH Confidence 3456554 455443332211111 11111112235778888876322 23444578899999999999999 Q ss_pred hHHHHHHHHHHhcCceeEeeCCCCccc-hhccCcceeeecCcc---cc-cCCCCCccceeecCcchh---HHHHHHHHHH Q lcl|Aclame:pro 303 NSADYEEMAFVAGQPTAFFTGLTKDWV-EDVFKDFKVHLGSRA---II-PLPQGATAGILQITPNSV---PFEAMTHKES 374 (535) Q Consensus 303 ~~sdl~~~l~~~~~P~~~~~G~~~~~~-~d~~~~~~i~iG~~~---~~-~lp~~~~~~~~e~~~~~l---~~~~l~~~e~ 374 (535) ..|.+.+.+..+...+.+-..+-.... .++... +....... .+ ..+.+++.++-.+++.-- ....++.+.+ T Consensus 273 ~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~ 351 (499) T protein:vir:80 273 MFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTT-QYFDSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLR 351 (499) T ss_pred HHHHHHHHHHhcccceecchhhhhccCCCCCCcc-cCCCcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHH Confidence 999999998876666665222111000 000000 00011111 11 122233333333444221 1244444444 Q ss_pred HHHH---Hhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC--CCCceeEEEEecc Q lcl|Aclame:pro 375 QMIA---MGANLLV-KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQT---GI--VNDETVEYNLNTD 445 (535) Q Consensus 375 qm~~---lga~~l~-~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g---~~--~~~~~~~v~~n~d 445 (535) ++.. ++...+. ..++.+||++.....+...+....+...++.+++++++.+.+|.. .. .......+++.++ T Consensus 352 ~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~ 431 (499) T protein:vir:80 352 IYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFD 431 (499) T ss_pred HHHHhcCCChhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeC Confidence 4432 3333332 345677888887777777777888888999999998887766532 10 1112234555555 Q ss_pred cCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccc Q lcl|Aclame:pro 446 FPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNK 520 (535) Q Consensus 446 f~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~ 520 (535) .....-..++++.+.+++.+|.||+++++.. .-|+ ++...+++.++|+.|..... +.+..++..+..+ T Consensus 432 d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~--~~~~--~d~ea~~el~~i~~E~~~~~---~~~d~~g~~ge~e 499 (499) T protein:vir:80 432 DSIAQDEDTTINRYTTAKNQGMIPLKIALQR--AWNI--TEAEADEWAEMLAKEKQAEI---PNNDMTGIFGEEE 499 (499) T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHhh--cCCC--ChHHHHHHHHHHHHHhhcCC---CCCCccccCCCCC Confidence 5544445678888999999999999987532 1232 22234567777776643221 1111112222222 No 73 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=99.88 E-value=2e-20 Score=128.59 Aligned_cols=456 Identities=12% Similarity=0.050 Sum_probs=244.2 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCccccc--CCCCCccCHHHHHHHHHHHHHHHHhcChHH-HHHHHhhhCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPS--LPNVGYQRVEFGEMLPKWRKIMDCLSGQEA-IKAKREEYLPMPSVDS 77 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~-~~~~g~~YLP~~~~~~ 77 (535) |-.+-.+--|.+-.+... .+.|--. -++|. .|++...+...|+ .+|.|... ++.....+-++ T Consensus 1 m~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~i~~~~---~yy~g~~~~~~~~~~~~~~~----- 65 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGL------LKALKDVKDHKKVN-ANDEDYKYIDMWK---RLYQGHYAEWHNLNYEHNGN----- 65 (496) T ss_pred ChhHHHHHHHHHHHHhcc------chhhHHHHhcCCCc-CCHHHHHHHHHHH---HHhcCCCchhhcchhccCCC----- Confidence 554433322222222110 0000000 12222 3677777777774 67888643 32211111111 Q ss_pred CChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEE Q lcl|Aclame:pro 78 RDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAI 156 (535) Q Consensus 78 ~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~v 156 (535) ...+ |-.-.|+.+.+++.+++++|.++|++++.+ ....+++++=. .++++..++.++..++.+|.+++ T Consensus 66 --------~~~~--~~~~~n~~k~i~~~~a~~l~~~p~~i~~~d~~~~e~l~~~~~-~n~f~~~~~~~~~~a~~~G~~~~ 134 (496) T protein:vir:38 66 --------PVNR--RQLSMNLPKVTAKYMSKLLFNEKVKINIDDKAAEEFVLNVLK-TNGFTKNMERYIEYGEAMGGFVI 134 (496) T ss_pred --------cccc--ceeecchHHHHHHHHhhhhhCCcceEeeCChHHHHHHHHHHh-ccCHHHHHHHHHHHHhhhCcEEE Confidence 0111 112259999999999999999999997654 33344443322 26799999999999999999999 Q ss_pred EEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeec--C Q lcl|Aclame:pro 157 FTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLN--A 234 (535) Q Consensus 157 lVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~--~ 234 (535) .|.....+ +|.+..++|++++-...+ + ..++.+++.+.+...+ + .|+.|+.. . T Consensus 135 ~~~~D~~~-------------~~~i~~v~~~~~~P~~~~--~--~~~~~~~f~~~~~~~~-----~---~y~~le~h~~~ 189 (496) T protein:vir:38 135 KVYHDGNK-------------NVKVSFATADCMYPLSND--S--ENVDECVIANSFHKNN-----K---YYTLLEWNEWQ 189 (496) T ss_pred EEEEcCCC-------------cEEEEEEcccceEEEEec--C--CcEEEEEEEEEEEeCC-----e---EEEEEEEEEEe Confidence 99776544 388999999998753332 1 2466677766554321 1 23333221 2 Q ss_pred CceEEE--EEEeeeccCCccccc-----cceeeeccCCCccceeEEEEeccC-----CCcCCCCcchHHHHHHHHHHHHh Q lcl|Aclame:pro 235 EGNYQV--ERWRRETQEEMYYSY-----SKHVPTDGNGNPFKEIPFQFIGPL-----DNNADIDHPPLLDLCEVNIGHYR 302 (535) Q Consensus 235 ~g~y~v--~~w~~~~~~~~~~~~-----~~~~~~~~~~~~l~~IP~v~~~~~-----~~~~~~~~ppL~dLA~ln~~hy~ 302 (535) ++.|++ ++|+.......+... .+.......-+.+...||+++... ......|.+.|.++..+..++.. T Consensus 190 ~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~ 269 (496) T protein:vir:38 190 GDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDL 269 (496) T ss_pred CceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEecCCcccccccCCcCCCchHhhHHHHHHHHHH Confidence 345544 345544322111110 011111122245677888866332 33445678999999999999999 Q ss_pred hHHHHHHHHHHhcCceeE----eeCCCCccchhccCcceeeecCcc---cc-cCCCCCccceeecCcch---hHHHHHHH Q lcl|Aclame:pro 303 NSADYEEMAFVAGQPTAF----FTGLTKDWVEDVFKDFKVHLGSRA---II-PLPQGATAGILQITPNS---VPFEAMTH 371 (535) Q Consensus 303 ~~sdl~~~l~~~~~P~~~----~~G~~~~~~~d~~~~~~i~iG~~~---~~-~lp~~~~~~~~e~~~~~---l~~~~l~~ 371 (535) ..|++.+.++.+...+.+ +....+.. +.. ......... ++ ..+.++..++-++++.- -....++. T Consensus 270 ~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~---g~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~ 345 (496) T protein:vir:38 270 MFDSYYQEFKLGKKKVLVPSSFVKTAVNLD---GST-TQYFDSTDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINA 345 (496) T ss_pred HHHHHHHHHhhcccceecchHHhhccCCCC---Ccc-ccCCCCccceEEEeecCCCcccccceeeccccCHHHHHHHHHH Confidence 999999888864444443 11111100 000 000001110 11 12223333333344321 11344555 Q ss_pred HHHHHHH---Hhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCCCCceeEE Q lcl|Aclame:pro 372 KESQMIA---MGANLLV-KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQ-------TGIVNDETVEY 440 (535) Q Consensus 372 ~e~qm~~---lga~~l~-~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~-------g~~~~~~~~~v 440 (535) +.+++.. ++...+. ..+++.||++.....+...+....+...++.+++++++.+..+. |... ....+ T Consensus 346 ~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~--~~~~i 423 (496) T protein:vir:38 346 MLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKFIEAYSGEVV--ELDTI 423 (496) T ss_pred HHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--Cccce Confidence 5555433 2333333 34566788877777777777778888899999999888765432 2222 23345 Q ss_pred EEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccc Q lcl|Aclame:pro 441 NLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNK 520 (535) Q Consensus 441 ~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~ 520 (535) ++.++........++++.+.+++++|+||++|++.. .-++ .+...+++.++++.|-.... +.+.-.+-+++++ T Consensus 424 ~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~--~~~~--~d~ea~~el~ri~~E~~~~~---~~~d~~~~~~~~e 496 (496) T protein:vir:38 424 TVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQR--AWNI--TEAEADEWAEMLAKEKQAEM---PNNDMNGIFGEEE 496 (496) T ss_pred EEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHh--cCCC--ChHHHHHHHHHHHHhhhccC---ccccccCCCCCCC Confidence 555554444445678899999999999999987642 1122 22234456677766643221 1111111222222 No 74 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=99.87 E-value=5e-20 Score=126.42 Aligned_cols=462 Identities=11% Similarity=0.094 Sum_probs=248.6 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccc--cCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGP--SLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSR 78 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~ 78 (535) ..|-+.-||+-..--.... .|.- ..++| ...|++......|+.+ |.|...+. .|-+.. T Consensus 4 ~~~~k~~~~~~~~~~~~~~-------~~~~~~~~~~i-~~~~~~~~ri~~~~~~---y~g~~~~~----~~~~~~----- 63 (508) T protein:vir:15 4 IQRIKDLFWKGAAATGVTG-------SLSKITDDPRI-SIDPDEYVRIQTDLDY---YSDKLQYI----HYQASD----- 63 (508) T ss_pred HHHHHHHHHHHHHHhcccc-------chHHhhccccc-ccCHHHHHHHHHHHHH---hcCCCccc----ccccCC----- Confidence 2222233343221110000 0111 12334 2367777777777655 77854321 121110 Q ss_pred ChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC--HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEE Q lcl|Aclame:pro 79 DEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP--PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAI 156 (535) Q Consensus 79 ~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p--~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~v 156 (535) . ..+.|+.. -.|+.+.+++.+++++|..+|+++++ +....+++.+ .+.+++...++.++..++..|.+++ T Consensus 64 -~----~~~~~~~~--sln~~~~i~~~~A~lv~~e~~~i~v~~~~~~~e~l~~i-l~~n~f~~~~~~~~e~a~a~G~~~~ 135 (508) T protein:vir:15 64 -G----IKKKRLKN--TINMAKTAARRIASVVFNEKAEIHVKDNNEADKFLNDV-LEDNDFKNKFEEALEKGVALGGFAM 135 (508) T ss_pred -C----Ccccccee--ecchHHHHHHHHHhhhhCCCceEEeCCchHHHHHHHHH-HHhccHHHHHHHHHHHHhhcCceEE Confidence 0 01222211 24999999999999999999999874 2232232221 1126788999999999999999999 Q ss_pred EEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeec--- Q lcl|Aclame:pro 157 FTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLN--- 233 (535) Q Consensus 157 lVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~--- 233 (535) .+-... + ++-+..++|++++-..++. + +....+.+.++...+.+ ....|+.|+.. T Consensus 136 k~~~d~-~-------------~~~i~~v~ad~~~P~~~d~-~--~~~~~af~~~~~~~~~~-----~~~~yt~lE~h~~~ 193 (508) T protein:vir:15 136 RPYIDG-N-------------HIKIAWVRADQFYPLQSNT-N--DISEAAIASRTQRTESN-----QTKYYTLLEFHQWQ 193 (508) T ss_pred EEEEeC-C-------------eeEEEEEcCCeeEEEEEcC-C--CeEEEEEEEEEEeecCC-----CceEEEEEEEEEEe Confidence 886542 1 3678889999986533321 2 12333344455443321 22345555443 Q ss_pred CCceEEEE--EEeeeccCCccccc--cc---e--eeeccCCCccceeEEEEecc-----CCCcCCCCcchHHHHHHHHHH Q lcl|Aclame:pro 234 AEGNYQVE--RWRRETQEEMYYSY--SK---H--VPTDGNGNPFKEIPFQFIGP-----LDNNADIDHPPLLDLCEVNIG 299 (535) Q Consensus 234 ~~g~y~v~--~w~~~~~~~~~~~~--~~---~--~~~~~~~~~l~~IP~v~~~~-----~~~~~~~~~ppL~dLA~ln~~ 299 (535) ..|.|+++ +|+.+.....+... .. + ......-+.+...||+.+.. .+.....|.+.+.++.++-.+ T Consensus 194 ~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~ 273 (508) T protein:vir:15 194 DNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAPQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDD 273 (508) T ss_pred cCcceEEEEEEEecCCchhcCcccchhhcccccCCCcceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHH Confidence 33566654 56554322111111 00 0 00011113456677776532 233445688999999999999 Q ss_pred HHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccC--CCCCccceeecCcc---hhHHHHHHHHHH Q lcl|Aclame:pro 300 HYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPL--PQGATAGILQITPN---SVPFEAMTHKES 374 (535) Q Consensus 300 hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~l--p~~~~~~~~e~~~~---~l~~~~l~~~e~ 374 (535) +....|.+.+.++.+...+.+-..+-..+. ++ ...+..+.+....+ +.+++.++=++++. .-....++.+.. T Consensus 274 lD~~~s~~~~e~~~~~~~i~v~~~~l~~d~-~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~ 350 (508) T protein:vir:15 274 INDTHDQFIWEIRLGQKHIAVQPGMLRFDD-EH--KPTFDTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIK 350 (508) T ss_pred HHHHHHHHHHHHHhcccceeechHHhcCCC-CC--ccccCCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHH Confidence 999999999999766666666333322111 11 11122222222212 22222222233332 112234444444 Q ss_pred HHHH---Hhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC----------CCCce Q lcl|Aclame:pro 375 QMIA---MGANLLV-KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQT---GI----------VNDET 437 (535) Q Consensus 375 qm~~---lga~~l~-~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g---~~----------~~~~~ 437 (535) ++.. ++...+. ...+.+||++.....+........+...++.+++++++.+.++.. .. ..... T Consensus 351 ~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~ 430 (508) T protein:vir:15 351 EFEVQIGLSTGTFSYSNDGVKTATEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQP 430 (508) T ss_pred HHHHHhCCCchhcccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCC Confidence 3322 3333332 345668888888888888888889999999999998887655432 11 11123 Q ss_pred eEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCc Q lcl|Aclame:pro 438 VEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGG 517 (535) Q Consensus 438 ~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~ 517 (535) ++++++++-.......++++.+.+++.+|++|+++++.. .-|+ .+...++|.+||..|.....+..+..+. .+|+ T Consensus 431 ~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~s~e~~i~~--~~g~--~deea~~el~ri~~E~~~~~~~~~~~~~-~~g~ 505 (508) T protein:vir:15 431 LDIECHFDDGVFVNKDKQLEEDAKVLAIGALSKQTFLQR--NYGM--TDEQAAEELAKIQSEAPTDTFEGGRSAI-LNGG 505 (508) T ss_pred cceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHh--cCCC--ChHHHHHHHHHHHHhccccCcccccccc-CCCC Confidence 445666655555555678888999999999999977642 2232 1222456778888775544333333333 2333 Q ss_pred ccc Q lcl|Aclame:pro 518 TNK 520 (535) Q Consensus 518 ~~~ 520 (535) +++ T Consensus 506 ~ge 508 (508) T protein:vir:15 506 DGE 508 (508) T ss_pred CCC Confidence 333 No 75 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=99.85 E-value=4.4e-19 Score=121.22 Aligned_cols=439 Identities=11% Similarity=0.083 Sum_probs=230.0 Q ss_pred HHHHHHHHHHhcChHHHHHHHhhhC-----CCCCCCCCChh-------hHHHHHH-------------HHhhh-ccchhH Q lcl|Aclame:pro 46 LPKWRKIMDCLSGQEAIKAKREEYL-----PMPSVDSRDEE-------QRRRYET-------------YLQRA-IFYNVT 99 (535) Q Consensus 46 ~~~w~~i~d~~~G~~~~~~~g~~YL-----P~~~~~~~~~E-------~~~~Y~~-------------rl~rA-~~~n~~ 99 (535) ...|++|++++..... +--+..+- |+.. -+++ ....|+. +..|- .-.|+. T Consensus 1 m~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~i~---~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~ 76 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKY-VMTTQSLTNITDHPKIA---ISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIA 76 (500) T ss_pred CchHHHHHHHHHHHHH-Hhhcchhhhhhcccccc---CCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchH Confidence 4445555555432111 00000000 1111 1111 1111210 00111 124999 Q ss_pred HHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCC Q lcl|Aclame:pro 100 ARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYR 178 (535) Q Consensus 100 ~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~r 178 (535) +.+++.+++++|..+|++++++. ...+++++= +.+++...++.++..++..|.+++.+-... .+ T Consensus 77 ~~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il-~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~--------------~~ 141 (500) T protein:vir:30 77 RTAAKKIASLVFNEQAEIKVDDDAANEFISETL-KNDRFNKNFERYLESCLALGGLAMRPYVDG--------------DK 141 (500) T ss_pred HHHHHHHhhhhcCCcceEecCChHHHHHHHHHH-hhccHHHHHHHHHHHHhhcCCEEEEEEEeC--------------Cc Confidence 99999999999999999987653 333443321 126789999999999999999998875532 24 Q ss_pred cEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCC---ceEEE--EEEeeeccCCccc Q lcl|Aclame:pro 179 PTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE---GNYQV--ERWRRETQEEMYY 253 (535) Q Consensus 179 Py~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~---g~y~v--~~w~~~~~~~~~~ 253 (535) |.+..++|++++-+..+. .+....+++.|++...++ ....|+.|+...| +.|++ ++|+.+.....+. T Consensus 142 ~~I~~v~ad~~~P~~~d~---~~~~~~a~~~~~~~~~~~-----~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~ 213 (500) T protein:vir:30 142 VRVAFVQAPVFLPLQSNT---QDVSSAAVVIKSVKTING-----KEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGS 213 (500) T ss_pred eEEEEEcCCeeEEEEEcC---CCeEEEEEEEEEeeeecC-----CceEEEEEEEEEEeCCceeEEEEEEEecccccccCc Confidence 889999999997654432 223444555555443322 1134555554322 23544 3566543221111 Q ss_pred cc--c---ceeeeccCCCccceeEEEEe-----ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeC Q lcl|Aclame:pro 254 SY--S---KHVPTDGNGNPFKEIPFQFI-----GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTG 323 (535) Q Consensus 254 ~~--~---~~~~~~~~~~~l~~IP~v~~-----~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G 323 (535) .. . +.......-+.+...||+++ +..+.+...|.+.+.++.++-.++....|.+.+.+..+...+.+-.. T Consensus 214 ~v~l~~~~~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~ 293 (500) T protein:vir:30 214 RVPLSEVYKDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPES 293 (500) T ss_pred ccccccccCCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechH Confidence 10 0 00011111134555566654 22233444678889999999999999999999999876665555332 Q ss_pred CCCccch----hccCcceeeecCcccccCC--CCCccceeecCcchh---HHHHHHHHHHHHHH---Hhhhhh-cccccc Q lcl|Aclame:pro 324 LTKDWVE----DVFKDFKVHLGSRAIIPLP--QGATAGILQITPNSV---PFEAMTHKESQMIA---MGANLL-VKSGGN 390 (535) Q Consensus 324 ~~~~~~~----d~~~~~~i~iG~~~~~~lp--~~~~~~~~e~~~~~l---~~~~l~~~e~qm~~---lga~~l-~~~~~~ 390 (535) +-..... +...+..+....+-...++ .+++.++-++++.-- ....++.+.+++.. ++...+ ...++. T Consensus 294 ~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~ 373 (500) T protein:vir:30 294 LTALTVRTTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSM 373 (500) T ss_pred HhcccCCCCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCcc Confidence 2111000 0001111111111111122 222223333333211 12344444444322 233333 234567 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCCCceeEEEEecccCCccCCHHHHHHHHHHHh Q lcl|Aclame:pro 391 RTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQ------TGIVNDETVEYNLNTDFPAARLTPNERAELILEWQ 464 (535) Q Consensus 391 ~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~------g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~ 464 (535) +||++.....+........+...++.+++++++.+..+. +... .....++++++-.......++++.+.++++ T Consensus 374 ~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~-~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~ 452 (500) T protein:vir:30 374 KTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEV-PSMDNISISLDDGVFTDRDAELDYWIKVVN 452 (500) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCcceEEEeCCCCCCCHHHHHHHHHHHHH Confidence 899998888888888888999999999999988776542 1111 223445666654444444567888999999 Q ss_pred cCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCC Q lcl|Aclame:pro 465 QGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASG 516 (535) Q Consensus 465 ~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~ 516 (535) +|++|+++++..+ -|+ .+...+++..+|+.|............+..+. T Consensus 453 aGi~s~~~~i~~~--~g~--~eeea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:30 453 AGFGTREMAIQKV--LNV--TEEKAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred cCCCCHHHHHHhc--CCC--CHHHHHHHHHHHHHhccccCCCCCccccccCC Confidence 9999999875322 232 22234456677766643222111111221111 No 76 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=99.85 E-value=4.4e-19 Score=121.22 Aligned_cols=439 Identities=11% Similarity=0.083 Sum_probs=230.0 Q ss_pred HHHHHHHHHHhcChHHHHHHHhhhC-----CCCCCCCCChh-------hHHHHHH-------------HHhhh-ccchhH Q lcl|Aclame:pro 46 LPKWRKIMDCLSGQEAIKAKREEYL-----PMPSVDSRDEE-------QRRRYET-------------YLQRA-IFYNVT 99 (535) Q Consensus 46 ~~~w~~i~d~~~G~~~~~~~g~~YL-----P~~~~~~~~~E-------~~~~Y~~-------------rl~rA-~~~n~~ 99 (535) ...|++|++++..... +--+..+- |+.. -+++ ....|+. +..|- .-.|+. T Consensus 1 m~~~~~~k~~~~~~~~-~~~~~~~~~~~~~~~i~---~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~ 76 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKY-VMTTQSLTNITDHPKIA---ISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIA 76 (500) T ss_pred CchHHHHHHHHHHHHH-Hhhcchhhhhhcccccc---CCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchH Confidence 4445555555432111 00000000 1111 1111 1111210 00111 124999 Q ss_pred HHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCC Q lcl|Aclame:pro 100 ARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYR 178 (535) Q Consensus 100 ~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~r 178 (535) +.+++.+++++|..+|++++++. ...+++++= +.+++...++.++..++..|.+++.+-... .+ T Consensus 77 ~~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il-~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~--------------~~ 141 (500) T protein:vir:98 77 RTAAKKIASLVFNEQAEIKVDDDAANEFISETL-KNDRFNKNFERYLESCLALGGLAMRPYVDG--------------DK 141 (500) T ss_pred HHHHHHHhhhhcCCcceEecCChHHHHHHHHHH-hhccHHHHHHHHHHHHhhcCCEEEEEEEeC--------------Cc Confidence 99999999999999999987653 333443321 126789999999999999999998875532 24 Q ss_pred cEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCC---ceEEE--EEEeeeccCCccc Q lcl|Aclame:pro 179 PTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE---GNYQV--ERWRRETQEEMYY 253 (535) Q Consensus 179 Py~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~---g~y~v--~~w~~~~~~~~~~ 253 (535) |.+..++|++++-+..+. .+....+++.|++...++ ....|+.|+...| +.|++ ++|+.+.....+. T Consensus 142 ~~I~~v~ad~~~P~~~d~---~~~~~~a~~~~~~~~~~~-----~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~ 213 (500) T protein:vir:98 142 VRVAFVQAPVFLPLQSNT---QDVSSAAVVIKSVKTING-----KEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGS 213 (500) T ss_pred eEEEEEcCCeeEEEEEcC---CCeEEEEEEEEEeeeecC-----CceEEEEEEEEEEeCCceeEEEEEEEecccccccCc Confidence 889999999997654432 223444555555443322 1134555554322 23544 3566543221111 Q ss_pred cc--c---ceeeeccCCCccceeEEEEe-----ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeC Q lcl|Aclame:pro 254 SY--S---KHVPTDGNGNPFKEIPFQFI-----GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTG 323 (535) Q Consensus 254 ~~--~---~~~~~~~~~~~l~~IP~v~~-----~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G 323 (535) .. . +.......-+.+...||+++ +..+.+...|.+.+.++.++-.++....|.+.+.+..+...+.+-.. T Consensus 214 ~v~l~~~~~~l~~~~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~ 293 (500) T protein:vir:98 214 RVPLSEVYKDLKDEAKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPES 293 (500) T ss_pred ccccccccCCcCcceEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechH Confidence 10 0 00011111134555566654 22233444678889999999999999999999999876665555332 Q ss_pred CCCccch----hccCcceeeecCcccccCC--CCCccceeecCcchh---HHHHHHHHHHHHHH---Hhhhhh-cccccc Q lcl|Aclame:pro 324 LTKDWVE----DVFKDFKVHLGSRAIIPLP--QGATAGILQITPNSV---PFEAMTHKESQMIA---MGANLL-VKSGGN 390 (535) Q Consensus 324 ~~~~~~~----d~~~~~~i~iG~~~~~~lp--~~~~~~~~e~~~~~l---~~~~l~~~e~qm~~---lga~~l-~~~~~~ 390 (535) +-..... +...+..+....+-...++ .+++.++-++++.-- ....++.+.+++.. ++...+ ...++. T Consensus 294 ~l~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~ 373 (500) T protein:vir:98 294 LTALTVRTTDGDVVPRPRFESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSM 373 (500) T ss_pred HhcccCCCCCccccCCcccCCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCcc Confidence 2111000 0001111111111111122 222223333333211 12344444444322 233333 234567 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCCCCceeEEEEecccCCccCCHHHHHHHHHHHh Q lcl|Aclame:pro 391 RTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQ------TGIVNDETVEYNLNTDFPAARLTPNERAELILEWQ 464 (535) Q Consensus 391 ~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~------g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~ 464 (535) +||++.....+........+...++.+++++++.+..+. +... .....++++++-.......++++.+.++++ T Consensus 374 ~TAtei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~-~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~ 452 (500) T protein:vir:98 374 KTATEIVSENSDTYQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEV-PSMDNISISLDDGVFTDRDAELDYWIKVVN 452 (500) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCcceEEEeCCCCCCCHHHHHHHHHHHHH Confidence 899998888888888888999999999999988776542 1111 223445666654444444567888999999 Q ss_pred cCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCC Q lcl|Aclame:pro 465 QGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASG 516 (535) Q Consensus 465 ~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~ 516 (535) +|++|+++++..+ -|+ .+...+++..+|+.|............+..+. T Consensus 453 aGi~s~~~~i~~~--~g~--~eeea~~~l~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:98 453 AGFGTREMAIQKV--LNV--TEEKAQEIAAEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred cCCCCHHHHHHhc--CCC--CHHHHHHHHHHHHHhccccCCCCCccccccCC Confidence 9999999875322 232 22234456677766643222111111221111 No 77 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=99.83 E-value=3e-18 Score=116.62 Aligned_cols=460 Identities=10% Similarity=0.066 Sum_probs=228.0 Q ss_pred hhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHH---HHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhh Q lcl|Aclame:pro 6 TTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEF---GEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQ 82 (535) Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y---~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~ 82 (535) --+-.- -|-+|- .--+-.|++.+.-+|+. ||.. ..+..+.++-+.+|.|...+ |-.... T Consensus 1 m~~~~~--ik~~~~-~~~~~~~~~~~~~~i~d-~~~i~~~~~~~~~i~~~~~~Y~g~~~~-------l~~~~~------- 62 (505) T protein:vir:79 1 MAFWDT--LKNLFR-KGSAAVGMTKSLGQIID-DPRINLPADEVERIARDKRYYMDDFKQ-------VTHKNS------- 62 (505) T ss_pred CchHHH--HHHHHH-Hhhhhhcchhhhhhhhc-ccCCCCCHHHHHHHHHHHHHhcCCCcc-------cccccc------- Confidence 000000 000000 00000111111111111 2222 11222222223333331110 000000 Q ss_pred HHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeec Q lcl|Aclame:pro 83 RRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYP 161 (535) Q Consensus 83 ~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p 161 (535) ....+.|.. .-.|+.+.+++.+++++|.++|++++++. ...+++.+= +.+++...++.++..++..|.+++.+-++ T Consensus 63 ~~~~~~~~~--~slnl~~~i~~~~A~ll~~e~~~i~~~d~~~~e~l~~i~-~~n~f~~~~~~~~e~a~a~G~~~~k~~~D 139 (505) T protein:vir:79 63 YGDTQKHEL--QSVNVTKLASAKLASLIFNEQCQVTVSDETANDFLDDVF-QQNDFYTTFEEKLEEWIALGSGCVRPYVD 139 (505) T ss_pred CCCccccce--eecchHHHHHHHHHhhhcCCCceeecCChHHHHHHHHHH-HhccHHHHHHHHHHHHhhcCCeEEEEEEe Confidence 000001111 11489999999999999999999987543 222322211 12578999999999999999999887654 Q ss_pred CCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEE-EEEEeecCCCcccceeeEEEEEeecC--CceE Q lcl|Aclame:pro 162 NVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVI-QENVLAQDDGFETTYVQQWRVLQLNA--EGNY 238 (535) Q Consensus 162 ~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l-~E~~~~~~d~f~~~~~~~~rvl~l~~--~g~y 238 (535) . + +|-+..++|++++=..++. + .++.+.+ .++.....+ ....|+.|+... ++.| T Consensus 140 ~-~-------------~~~i~~v~ad~~~P~~~d~-~---~~~~~a~~~~~~~~~~~-----~~~~yt~lE~h~~~~~~~ 196 (505) T protein:vir:79 140 S-G-------------KIKLAWATADQVYPLQADT-N---QVNELAIASRTTEVENH-----RTIYYTLLEFHQWDHGDY 196 (505) T ss_pred C-C-------------ceEEEEEcCCeeEEEEEcC-C---CeEEEEEEEEEEEecCC-----cceEEEEEEEEEecCceE Confidence 2 1 3678889999987533332 2 2333333 333332221 223455555432 3556 Q ss_pred EE--EEEeeeccCCcccc-----ccce--eeeccCCCccceeEEEEec-----cCCCcCCCCcchHHHHHHHHHHHHhhH Q lcl|Aclame:pro 239 QV--ERWRRETQEEMYYS-----YSKH--VPTDGNGNPFKEIPFQFIG-----PLDNNADIDHPPLLDLCEVNIGHYRNS 304 (535) Q Consensus 239 ~v--~~w~~~~~~~~~~~-----~~~~--~~~~~~~~~l~~IP~v~~~-----~~~~~~~~~~ppL~dLA~ln~~hy~~~ 304 (535) ++ ++|+.+.....+.. ..++ ......-+.+...+|+.+. +.+.....|.+.+.++.++-.++.... T Consensus 197 ~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~ 276 (505) T protein:vir:79 197 VITNELYRSEAAETVGINVPLNSLEQYEGLEPQVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTH 276 (505) T ss_pred EEEEEEEecCCCCccCcccchhhcccccccCcceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHH Confidence 54 45665443221111 0000 0011111345566666552 223334468899999999999999999 Q ss_pred HHHHHHHHHhcCceeEeeCCC----CccchhccCcceeeecCcccc-cC-CCCCccceeecCcchh---HHHHHHHHHHH Q lcl|Aclame:pro 305 ADYEEMAFVAGQPTAFFTGLT----KDWVEDVFKDFKVHLGSRAII-PL-PQGATAGILQITPNSV---PFEAMTHKESQ 375 (535) Q Consensus 305 sdl~~~l~~~~~P~~~~~G~~----~~~~~d~~~~~~i~iG~~~~~-~l-p~~~~~~~~e~~~~~l---~~~~l~~~e~q 375 (535) |.+.+.+..+...+.+-..+- ...........++.-+...+. .. ..+++.++-++++.-- ..+.++.+.++ T Consensus 277 s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~~~~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~ 356 (505) T protein:vir:79 277 DQFVDEVKKGQRRLIVPAEWLKTGSSYGGQASETHPPMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLRE 356 (505) T ss_pred HHHHHHHHhcccceeechHHhcccCCCCcccccccccCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHH Confidence 999999887766666622110 000000000001111111111 11 1233444545555321 12445555444 Q ss_pred HHH---Hhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------CCCCceeEE Q lcl|Aclame:pro 376 MIA---MGANLL-VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTG-----------IVNDETVEY 440 (535) Q Consensus 376 m~~---lga~~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~-----------~~~~~~~~v 440 (535) +.. ++...+ ...++.+||++...+.+...+....+...+++|+.++++.|.++... ..+...+.+ T Consensus 357 i~~~~g~s~~~~~~~~~~~~TAtei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i 436 (505) T protein:vir:79 357 FENQTGLSQGTFTTSPSGIQTATEVVTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDI 436 (505) T ss_pred HHHHhCCChhhcCCCccccchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeE Confidence 433 222323 23456788888888888888889999999999999999987765421 011223455 Q ss_pred EEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcc Q lcl|Aclame:pro 441 NLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGT 518 (535) Q Consensus 441 ~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~ 518 (535) +++++-.......++++...+++++|++|+++++.. .-|+ + +...++|..||.+|-.. ..+++++ .|++ T Consensus 437 ~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~e~~l~~--~~~~-~-eeea~~el~ri~~E~~~---~~p~~~~--~gg~ 505 (505) T protein:vir:79 437 TINFNDGVFVDQESKRAADLQAVQAQVMPKKQFLMR--NYGL-D-EEEADEWLAQIDAENST---AEPEFNQ--FGGD 505 (505) T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHh--cCCC-C-hHHHHHHHHHHHHhccc---cCCCchh--ccCC Confidence 555554444444567888999999999999976632 2222 1 22245567788766321 1222222 2222 No 78 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=99.80 E-value=2.7e-17 Score=111.44 Aligned_cols=448 Identities=10% Similarity=0.068 Sum_probs=226.6 Q ss_pred HHHHHHHHHHhcChH-HHHHHHhhhCCC----CCCCCCChh------hHHHHHH-------------HHhhh-ccchhHH Q lcl|Aclame:pro 46 LPKWRKIMDCLSGQE-AIKAKREEYLPM----PSVDSRDEE------QRRRYET-------------YLQRA-IFYNVTA 100 (535) Q Consensus 46 ~~~w~~i~d~~~G~~-~~~~~g~~YLP~----~~~~~~~~E------~~~~Y~~-------------rl~rA-~~~n~~~ 100 (535) ..-|+.|++++.-.- .+ .++ -|-. +...-.+++ ....|+. ...|- .-.|+.+ T Consensus 1 m~~~~~~k~~~~k~~~~~--~~~-~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~ 77 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYM--QTS-NLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIAR 77 (522) T ss_pred CchHHHHHHHHHHHHHHh--hcc-cchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHH Confidence 334444444432100 00 000 0100 000000000 0000100 00111 1139999 Q ss_pred HHHHHHhhhhhccccccccCHH-HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 101 RTLDGMMGQVFSRDPIRQLPPA-LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 101 ~tv~~l~G~lF~k~p~~~~p~~-l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) .+++.+++++|..+|++++++. +..+++.+=. -+.+...++..+..++..|..++.+-... + ++ T Consensus 78 ~i~~~~A~lv~~e~~~i~v~d~~~~~~l~~~l~-~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~-------------~~ 142 (522) T protein:vir:47 78 TASKKIASLVYNEQATITTKNEILQKFLDDMLT-NDRFNKNFERYLESCLALGGLAMRPYIDG-D-------------KV 142 (522) T ss_pred HHHHHHhhhhcCCcceeecCChHHHHHHHHHHh-hcchHHHHHHHHHHhhccCCEEEEEEEcC-C-------------ce Confidence 9999999999999999987643 3333332211 26789999999999999998888775431 2 37 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCC--------------ceEEE--EEE Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE--------------GNYQV--ERW 243 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~--------------g~y~v--~~w 243 (535) .+..++|.+++=-.++ +..++.-+.+.+++...++ ....|++|+...| +.|++ ++| T Consensus 143 ~i~~v~ad~~~P~~~~---~~~~~e~a~~~~~~~~~~~-----~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly 214 (522) T protein:vir:47 143 RVAFIQAPVFFPLESN---TQDVSSAAILTKTIKSEGR-----KNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELY 214 (522) T ss_pred EEEEEcCCceEEEEEc---CCceEEEEEEEEEEeeccc-----ceeEEEEEEEeeecccccccccccccCCceEEEEEEe Confidence 7888999888642222 2234555666666544322 2234444544322 23443 445 Q ss_pred eeeccCCccccc-----ccee--eeccCCCccceeEEEEec-----cCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH Q lcl|Aclame:pro 244 RRETQEEMYYSY-----SKHV--PTDGNGNPFKEIPFQFIG-----PLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA 311 (535) Q Consensus 244 ~~~~~~~~~~~~-----~~~~--~~~~~~~~l~~IP~v~~~-----~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l 311 (535) +.......+... .++. .....-+.+...+|+++. +.+.+...|.+.+.+..++-.++...-+.+.+-+ T Consensus 215 ~~~~~~~lG~~v~l~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~ 294 (522) T protein:vir:47 215 RSDVNDVLGQRVNLSELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEV 294 (522) T ss_pred ecCCCcccCccccccccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHH Confidence 543322211110 0000 011111344555566552 2222344678888888888899988888888888 Q ss_pred HHhcCceeEeeCCCCc-----cch-----hccCcceeeecCcccccCCCCCccceeecCcchh-HHHHHHHHHHHHHH-- Q lcl|Aclame:pro 312 FVAGQPTAFFTGLTKD-----WVE-----DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSV-PFEAMTHKESQMIA-- 378 (535) Q Consensus 312 ~~~~~P~~~~~G~~~~-----~~~-----d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l-~~~~l~~~e~qm~~-- 378 (535) ..+...+.+-..+..- ... ....+..+..+-+ ...+.+.+...+++.=..- ...+++.+..++.. T Consensus 295 ~~g~~~i~v~~~~l~~~~~~~~g~~~~~~~fd~~~~~f~~~~--~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~ 372 (522) T protein:vir:47 295 RMGQRRVIVPEHLTQRQYQRPDGTIDFRPRFDVEQNVYMQIG--GSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQI 372 (522) T ss_pred HhccceeecchHHhccCCCCCCcccccccccCcccceEeecC--CCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHh Confidence 8777666652221110 000 0000011111111 0111222233222221111 12234433333322 Q ss_pred -Hhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCceeEEEEecccCCccC Q lcl|Aclame:pro 379 -MGANLL-VKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTG-----IVNDETVEYNLNTDFPAARL 451 (535) Q Consensus 379 -lga~~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~-----~~~~~~~~v~~n~df~~~~~ 451 (535) ++...+ ...++.+||++...+.+...+....+...+++|++++++.+..+... ........+++.++-..... T Consensus 373 gls~~tf~~~~~~~kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D 452 (522) T protein:vir:47 373 GVSSGMFTFDGQGMKTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTD 452 (522) T ss_pred CCCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCC Confidence 333333 23456788998888888888889999999999999999988766521 11223455666666554444 Q ss_pred CHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCC Q lcl|Aclame:pro 452 TPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGG 530 (535) Q Consensus 452 d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (535) ...++..+.+++++|.+|+++++.. .-|+ .+...++|..||.+|.... .+. +...++.+..+.+.|..-| T Consensus 453 ~~~~~~~~~~~v~aG~~s~e~~i~~--~~g~--~eeea~~el~ri~~E~~~~---~~~--~~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 453 RHAELDYWAKMVAAGFSTKKRAIGK--TLNI--SGVEAEKELNAINSELLPM---NDA--ELAIYGMHDQNEEKADDKG 522 (522) T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHh--cCCC--ChHHHHHHHHHHHHhhccC---CCC--CCCCCCCCCcccccCCCCC Confidence 4567888999999999999987642 2232 1122356777887663322 111 1122222333333222111 No 79 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=99.80 E-value=1.4e-17 Score=113.00 Aligned_cols=462 Identities=9% Similarity=-0.001 Sum_probs=242.1 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) ..+-+.-||+-+ .|... +. ..=-+..++| ...+++.+++..|+.+ |.|... ..+....+ T Consensus 4 ~~~ik~~~~~~~-~~~~~--~~---~~~~~~~~~i-~~~~~~~~~I~~w~~~---Y~g~~~----------~~~~~~~~- 62 (517) T protein:vir:98 4 IQRIKNFFKRGG-YALSG--QT---LKSINDHEKI-NIDPNELARIERNLRQ---YEGDYP----------QVEYINSQ- 62 (517) T ss_pred HHHHHHHHHHHH-HHhcc--cc---hhHhhcCCce-ecCHHHHHHHHHHHHH---hcCCCc----------cccccccc- Confidence 222222233221 11100 00 0000111233 2356778888888644 777432 21100000 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHH----------------HHHHHhccCCCCCCHHHHHHHH Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPA----------------LEAIVEDIDGEGVSLDQQAKKA 144 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~----------------l~~l~~d~d~~G~~L~~~~~~~ 144 (535) ...+.|... -.|+.+.+.+.+++++|..++++.+++. |..++++ +++...++.. T Consensus 63 ---~~~~~~~~~--sl~~~~~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~~-----n~f~~~~~~~ 132 (517) T protein:vir:98 63 ---GKIQERDYM--TLNLRKLSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQH-----NKFIKNLSDY 132 (517) T ss_pred ---cccccccee--ecCcHHHHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHHh-----ccHHHHHHHH Confidence 011111111 1599999999999999999999977631 3333333 5789999999 Q ss_pred HHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCccccee Q lcl|Aclame:pro 145 LGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYV 224 (535) Q Consensus 145 ~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~ 224 (535) +..++..|.+++-+-... + ++.|..++|.+++-++++. .+ .+..+|........+ ... T Consensus 133 ~e~a~a~G~~a~k~~~d~-~-------------~~~I~~v~ad~~~Pl~~~~---~~-v~~~ai~~~~~~~~~----~~~ 190 (517) T protein:vir:98 133 LEPTFALGGLTVRPYVDN-G-------------EIEFSWALANAFYPLRSNS---NG-ISEGVMKSVTTKVIG----NKT 190 (517) T ss_pred HHHHhhhCCEEEEEEEeC-C-------------eeEEEEEcCCeeEEEEecC---CC-eEEEEEEEEEEEeec----CCc Confidence 999999999988775442 1 3678899999997655432 12 333334322211111 112 Q ss_pred eEEEEEeecCC-------ceEEEE--EEeeeccCCcccccc-----ceeeeccCCCccceeEEEEe-----ccCCCcCCC Q lcl|Aclame:pro 225 QQWRVLQLNAE-------GNYQVE--RWRRETQEEMYYSYS-----KHVPTDGNGNPFKEIPFQFI-----GPLDNNADI 285 (535) Q Consensus 225 ~~~rvl~l~~~-------g~y~v~--~w~~~~~~~~~~~~~-----~~~~~~~~~~~l~~IP~v~~-----~~~~~~~~~ 285 (535) ..|+.|+...+ |+|+++ +|+.......+.... +......--+++..-+|+++ ++.+..... T Consensus 191 ~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~spl 270 (517) T protein:vir:98 191 VYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPL 270 (517) T ss_pred eEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccccccCCCcceeECCCCcceEEEecCCcccccccCCCC Confidence 34666665443 457654 565443332221111 00011111123444445444 223334556 Q ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch-hccCcceeeecCc---ccccCCCCCccceeecCc Q lcl|Aclame:pro 286 DHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE-DVFKDFKVHLGSR---AIIPLPQGATAGILQITP 361 (535) Q Consensus 286 ~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~-d~~~~~~i~iG~~---~~~~lp~~~~~~~~e~~~ 361 (535) |.+.+.+..++-.++...-+.+.+.+..+...+.+=..+-....+ ++.......-+.. ..+..+. ++.++-++++ T Consensus 271 G~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i~vp~~~l~~~~~~~g~~~~~~~d~~~~~y~~~~~~~-~~~~i~~~~~ 349 (517) T protein:vir:98 271 GLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVPDESGMPPPQVFDPDVNVYKSIRMGT-DEEFVKDVTH 349 (517) T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHhCCcceecChhhhccccCCCCcccCCCCCcccceeeeccCCC-CCCceeeecc Confidence 888888888888888888888888888766665553332110000 0000000000111 1122222 2334445555 Q ss_pred chh---HHHHHHHHHHHHHH---Hhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----- Q lcl|Aclame:pro 362 NSV---PFEAMTHKESQMIA---MGANLLV-KSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQ----- 429 (535) Q Consensus 362 ~~l---~~~~l~~~e~qm~~---lga~~l~-~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~----- 429 (535) .-- ..+.++.+.+++.. ++...+. .+.+.+||++...+.+...+....+...+++|++++++.|..|. T Consensus 350 ~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~ 429 (517) T protein:vir:98 350 DIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKL 429 (517) T ss_pred ccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 321 12344444444322 3333333 33456889998888888888999999999999999998876543 Q ss_pred -CCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCC Q lcl|Aclame:pro 430 -TGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAG 508 (535) Q Consensus 430 -g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~ 508 (535) +... .....++++++-.......+++..+.+++.+|.+|+++++..+ .|+ + +...+++..||..|.....+. T Consensus 430 ~~~~~-~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~~~~i~~~--~g~-~-eeeA~~e~~~i~~E~~~~~~~-- 502 (517) T protein:vir:98 430 FGGEI-PSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPTVEAIQRI--FKV-P-KKTAEQWLEEIRKDQIELDPV-- 502 (517) T ss_pred cCCCC-CCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHh--CCC-C-hHHHHHHHHHHHHhccccCCC-- Confidence 2111 1234466666544444446678889999999999999876533 242 2 223355667776664322111 Q ss_pred cCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 509 KVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) ...+.+.+++.|.++ T Consensus 503 ---------~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 503 ---------TISQRAQKRMFGDEE 517 (517) T ss_pred ---------CccccccCCCCCCCC Confidence 112233333333333 No 80 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=99.77 E-value=1.3e-16 Score=107.71 Aligned_cols=447 Identities=10% Similarity=0.033 Sum_probs=223.6 Q ss_pred CcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHH--HHHHHhhhCCCCCCCCCChhhHHHHHHHH----------hhh Q lcl|Aclame:pro 26 SGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEA--IKAKREEYLPMPSVDSRDEEQRRRYETYL----------QRA 93 (535) Q Consensus 26 ~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~--~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl----------~rA 93 (535) -||+..|- .. |..-|.|+.. =-+.-..|++......... ....|..++ .|- T Consensus 1 ~~~~~~~~----------~~------i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~ 63 (518) T protein:vir:78 1 MGVWSVMT----------RF------IKGWLNGKPNGSEPELIPKYLPLVPDNQKEW-SKDSYLTSLWAQGYVPTVHDKL 63 (518) T ss_pred CcchhhHH----------HH------HHHhhcCCCCccchhccHHHhhhcccchhhh-hhhhhhhhhcccCCCCcccccc Confidence 33333332 11 1112222210 0000112222111000000 000011111 122 Q ss_pred ccchhHHHHHHHHhhhhhccccccccC-------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcc Q lcl|Aclame:pro 94 IFYNVTARTLDGMMGQVFSRDPIRQLP-------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRP 166 (535) Q Consensus 94 ~~~n~~~~tv~~l~G~lF~k~p~~~~p-------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~ 166 (535) .-.|..+.+++.++.+||..+|+++++ +.+..+++.+ .+.+.++..+...+..++..|..++-+-... T Consensus 64 ~~~~l~~~i~~~~A~ll~~e~~~i~v~~~~~~d~e~~~~~l~~i-l~~n~f~~~~~~~~e~a~a~G~~~~k~~~d~---- 138 (518) T protein:vir:78 64 MNSGTGNEIVVVAAEYISGKPLSIDVTGVNGSKDENLTKQLKEA-LRIDNFDSKSVKIVELAGGSGVSAVKINILN---- 138 (518) T ss_pred ccCChHHHHHHHHHHhhcCCCceEEecCccccCcHHHHHHHHHH-HHhccHHHHHHHHHHHhhccCceEEEEEEEC---- Confidence 235789999999999999999998764 2233333221 1226788999999999999998886443211 Q ss_pred cchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCC----------c Q lcl|Aclame:pro 167 VTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE----------G 236 (535) Q Consensus 167 ~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~----------g 236 (535) -+|-+..++|.+++=... +| .++.+++.+.....+ ....|+.|+...+ + T Consensus 139 ----------~~~~i~~v~ad~~~P~~~---~g--~~~~~~f~~~~~~~~------k~~~y~~lE~he~~~~~~~~~~~~ 197 (518) T protein:vir:78 139 ----------GRPSISVHSSSQFWIDFK---NN--EPFRFNFFEEIPTSN------KADIYYLVESREIKQWDKEGKKLS 197 (518) T ss_pred ----------CeeEEEEEcCCeeEEEee---cC--cEEEEEEEEEeecCC------cceeEEEEEeeccccccceeeccc Confidence 147788888888865322 23 366676666544322 1234555554322 2 Q ss_pred eEEE--EEEeeeccCCcccc-cc--c---------eeeeccCCCccceeEEEEe-cc-----CCCcCCCCcchHHHHHHH Q lcl|Aclame:pro 237 NYQV--ERWRRETQEEMYYS-YS--K---------HVPTDGNGNPFKEIPFQFI-GP-----LDNNADIDHPPLLDLCEV 296 (535) Q Consensus 237 ~y~v--~~w~~~~~~~~~~~-~~--~---------~~~~~~~~~~l~~IP~v~~-~~-----~~~~~~~~~ppL~dLA~l 296 (535) .|++ ++|+.+........ .. + ..............||+++ .+ ...+...|.+.+.++.++ T Consensus 198 ~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~ 277 (518) T protein:vir:78 198 GGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNY 277 (518) T ss_pred ceeEEEEEeeecCcccccccccccccccccccccccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHH Confidence 3333 34554322211100 00 0 0000000112234555543 22 122334588999999999 Q ss_pred HHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchh--ccCcceeeecCcccccCC--C--CCccc-eee-cCcchh---- Q lcl|Aclame:pro 297 NIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVED--VFKDFKVHLGSRAIIPLP--Q--GATAG-ILQ-ITPNSV---- 364 (535) Q Consensus 297 n~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d--~~~~~~i~iG~~~~~~lp--~--~~~~~-~~e-~~~~~l---- 364 (535) -.++....+.+.+.+..+...+.+-..+-...... ......+..+.+....++ . +.+.+ +++ +++. + T Consensus 278 id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~~fd~~~~~y~~i~~~~~~~~~~~~~i~~~~~~-Ir~e~ 356 (518) T protein:vir:78 278 LFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKSTDKEEWSMNVDEDYFMQFKGTLDAGAKLNDMIQFMQGD-FRDGS 356 (518) T ss_pred HHHHHHHHHHHHHHHHhCCceeeechhHhccCCCCCCCccccccCCCCceEEEecCcCCCCCccccceeeeecc-cChHH Confidence 99999999999999987555555533321110000 000111222223222221 1 11111 222 2222 2 Q ss_pred HHHHHHHHHHHHH---HHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----C---CC Q lcl|Aclame:pro 365 PFEAMTHKESQMI---AMGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTG----I---VN 434 (535) Q Consensus 365 ~~~~l~~~e~qm~---~lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~----~---~~ 434 (535) ....++.+..++. -++...+..+.+.+||++...+.+...+.+..+...++.+++++++.++..... . .. T Consensus 357 ~~~~~~~~l~~~~~~~G~s~~tfg~~~~~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~ 436 (518) T protein:vir:78 357 YRETMEYFAQKAVSKSGYNPATFNLGNREVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIM 436 (518) T ss_pred HHHHHHHHHHHHHHhhCCChhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccC Confidence 1233444433332 234444555566789999998888889999999999999999998876654321 1 11 Q ss_pred CceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCC Q lcl|Aclame:pro 435 DETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAA 514 (535) Q Consensus 435 ~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~ 514 (535) ...+.++++++-.......++++.+.+++.+|++|++++++++. .+ . .+...++|.+||.+|-...+. +++.+ T Consensus 437 ~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGimS~e~~i~~~~-~~-~-~deea~~e~~ri~~E~~~~~~--~~p~~-- 509 (518) T protein:vir:78 437 RDEIRVIIEFPDPMSVNLNELSSTLNNMNSALAMSVEEKVKLIH-PK-W-EDEEIQAEVKRIYLENAIGEV--PDPEA-- 509 (518) T ss_pred CCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHhC-CC-C-CHHHHHHHHHHHHHHhcccCC--CCCcc-- Confidence 23345666665555554556777788899999999998776431 12 1 222345567787766322211 11111 Q ss_pred CCcccccccccccC Q lcl|Aclame:pro 515 SGGTNKAKLNNGNG 528 (535) Q Consensus 515 ~~~~~~~~~~~~~~ 528 (535) ..-+++.-| T Consensus 510 -----~~g~~~~~g 518 (518) T protein:vir:78 510 -----IGGMETKGG 518 (518) T ss_pred -----ccCCCCCCC Confidence 111111111 No 81 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=98.75 E-value=6.8e-08 Score=59.89 Aligned_cols=428 Identities=8% Similarity=-0.020 Sum_probs=186.7 Q ss_pred CCCCCccC-HHHHHHHHHHHHHHHHhcChHHHHH--HHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhh Q lcl|Aclame:pro 32 LPNVGYQR-VEFGEMLPKWRKIMDCLSGQEAIKA--KREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMG 108 (535) Q Consensus 32 M~~v~~~h-p~y~~~~~~w~~i~d~~~G~~~~~~--~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G 108 (535) |..++... +..........-+---+ |...-|+ ....|.... . -+. ...+..|. ...+.+.+|+..++ T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~-g~~~~~d~~~~~~~~~~~--~-~~~--~~l~~lY~----~~~l~r~iVd~~a~ 70 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGH-GKANSRDKLTRQTPGNGQ--K-LDL--KACENLYA----SNSIAMNIVDIISE 70 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhc-CCcchhhhhhccccCccc--c-cCH--HHHHHHHH----hCCccchhhccchH Confidence 77655422 11111111111111111 2111111 112232110 0 010 12223333 23566889999999 Q ss_pred hhhcccccccc--CHH---HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCc---ccc-hHHHHhccCCc Q lcl|Aclame:pro 109 QVFSRDPIRQL--PPA---LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGR---PVT-VLEQKLGLYRP 179 (535) Q Consensus 109 ~lF~k~p~~~~--p~~---l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~---~~t-~ad~~~~~~rP 179 (535) -++++...++. ++. ++.+++. ..+..-++.+++.+..+|.++|+|..-.... ..+ .-....-+.-. T Consensus 71 d~~r~g~~i~~~~~~~~~~~~~~~~~-----l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~ 145 (461) T protein:vir:80 71 DMVRAGWSLKTDNKEMKKNIESKWRK-----LKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIP 145 (461) T ss_pred HhhcCCeeeecCCHHHHHHHHHHHHH-----hhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCccccccccee Confidence 99999988853 222 4455554 3578889999999999999999985321110 000 00000001112 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeec-CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccce Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ-DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKH 258 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~ 258 (535) ||..|.+.+|.. .+...++ ...|+.-. .|++.....++.+.+ .... T Consensus 146 ~l~~~~~~~i~~-----------------~~~~~dp~sp~fg~P~--~y~i~~~~~~~~~~~--------~~~~------ 192 (461) T protein:vir:80 146 YINTFNTQKVTQ-----------------LYLNQDMFSEHFGEVE--FFEVNRVSQLGEEIL--------SGTT------ 192 (461) T ss_pred EEEeccccccch-----------------hhhcccCcCcccccce--EEEEecccccccccc--------cccc------ Confidence 333333333210 0111111 12343322 222222222222110 0000 Q ss_pred eeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhc---cC Q lcl|Aclame:pro 259 VPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDV---FK 334 (535) Q Consensus 259 ~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~---~~ 334 (535) ......++.-+++.+ +........|.|-|..+-+.-...-+..---..+++...++..-+.|+..-..++. .+ T Consensus 193 ---~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~~~~~~~~~~~ 269 (461) T protein:vir:80 193 ---ASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDALNKDDKANLTA 269 (461) T ss_pred ---CccceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecchHHhhhchHHHHHHH Confidence 001112333455544 33333444577755544333333333333333566777888877776543111110 00 Q ss_pred cceeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchH--HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 335 DFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFG--EAQQEEASEQSILSACTK 412 (535) Q Consensus 335 ~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~--~a~~~~~~~~S~L~~~a~ 412 (535) .....-+...++.++.+.++..+..+-.++ ...++...++|.....-+...=.+..++. +...+...=+..+.++.. T Consensus 270 ~~~~~~~~~g~~~~d~~e~~e~~~~~lsgl-~~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe 348 (461) T protein:vir:80 270 MLDFMFRTEALAIIKGDEQLTKESTNVSGM-KDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQE 348 (461) T ss_pred HHHHhcCCceEEEEcCCcceEEEecCcCCH-HHHHHHHHHHHhhhhcCCeeeeecccCCccccchHHHHHHHHHHHHHHH Confidence 011112334455566666666666555554 35566566666543322221111111111 111222333455777774 Q ss_pred -HHHHHHHHHHHHHHHHcC---CCCCCceeEEEEecccCCccCCHHH-------HHHHHHHHhcCCCCHHHHHHHHHhCC Q lcl|Aclame:pro 413 -NVSMAFRKALRWANQFQT---GIVNDETVEYNLNTDFPAARLTPNE-------RAELILEWQQGAITFKEMRAGLRRAG 481 (535) Q Consensus 413 -~~~~a~~~~lr~~a~~~g---~~~~~~~~~v~~n~df~~~~~d~~~-------~~al~~l~~~G~is~et~~~~L~r~g 481 (535) .+...++++++++.+=++ ...++....+++.++......+.+. +++...++++|.|+.++.+++|+.+. T Consensus 349 ~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~ 428 (461) T protein:vir:80 349 NRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRF 428 (461) T ss_pred HHHHHHHHHHHHHHHHHhcccccccCccccceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhc Confidence 478888888887764332 2233333456666655554443333 35677889999999999999886433 Q ss_pred CCCccCC---HHHHHHHHHhchhhcccCCCcCCCC Q lcl|Aclame:pro 482 VASEDDA---KAETEGKATVEFIAKTAAAGKVGDA 513 (535) Q Consensus 482 vl~~~~~---~eee~~~i~~e~~~~~~~~~~~~~~ 513 (535) .++++.. .+.+.+++..+. ......+.+++ T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~g 461 (461) T protein:vir:80 429 GLENSSKFSGDSAEIDKLAKLV--YDAYAKKNADG 461 (461) T ss_pred CCCCCccCCCCCchhhhhhhhc--cccccccCCCC Confidence 3322210 111111111110 00111111111 No 82 >protein:vir:93630 Length: 776 # NCBI annotation: Bcep22gp51 # Family: family:all:487 # MgeID: mge:1470 # MgeName: Bcep22 # Cross-refs: genbank:acc:NP_944280;genbank:gi:38640357;genbank:GeneID:2658279 Probab=98.72 E-value=8.6e-08 Score=59.31 Aligned_cols=496 Identities=13% Similarity=0.079 Sum_probs=183.9 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCC---ccCH-------H-HHHHHHHHHHHHHHhcChHHHHHH---H Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVG---YQRV-------E-FGEMLPKWRKIMDCLSGQEAIKAK---R 66 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~---~~hp-------~-y~~~~~~w~~i~d~~~G~~~~~~~---g 66 (535) |-- +.+++- +-+-|-+.-=|+.|++-+ ..|+ + ......-+..++..+.....+|+. - T Consensus 1 ~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~a~~d 71 (776) T protein:vir:93 1 MFD--------LNDKDS-TQLVPARTDEGELSPGEDAAQREKPANPLDSEQAVELHSRLLSYYRQELSRQQDNRAEMAVD 71 (776) T ss_pred CCC--------cccccc-ccccccccccccCCCCCcccchhcccCCCCCHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH Confidence 321 111110 001111222233344311 1111 0 111112222233333344444432 2 Q ss_pred hhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcccccccc-C---------HHHHHHHhccCCCCCC Q lcl|Aclame:pro 67 EEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQL-P---------PALEAIVEDIDGEGVS 136 (535) Q Consensus 67 ~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~-p---------~~l~~l~~d~d~~G~~ 136 (535) ..|. .+..-+++.....+.+-...+.+|.++.+|+.++|...++.+.+.+ | +.+..+++.+- +=++ T Consensus 72 ~~fy---~G~Qw~~~~~~~l~~~g~p~~~~N~i~~~i~~v~g~~~~nr~~~~~~p~~~~d~~~Ae~l~~~~~~~~-~~~~ 147 (776) T protein:vir:93 72 EDYY---DNIQWSQDEIDELKERGQAPTVYNVISQSVNWIIGSEKRGRSDFKVLPRRKDGGKAAERKTALLKYLS-DVNH 147 (776) T ss_pred HHHh---CCCCCCHHHHHHHHhcCCceEEecchHHHHHHHHHHHHhCCcceEEecCChhHHHHHHHHHHHHHHHH-Hhhc Confidence 3454 3444455555556666666777999999999999999887766542 2 22334444442 3467 Q ss_pred HHHHHHHHHHHHHhhCcEEEEE--eecCCCcccchHHHHhccCCcEEE-Eechhhhh-----------ccee-------- Q lcl|Aclame:pro 137 LDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTVLEQKLGLYRPTIT-LVHPTSII-----------NWRT-------- 194 (535) Q Consensus 137 L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ad~~~~~~rPy~~-~~~~~~Ii-----------~w~~-------- 194 (535) .+.-+..++..++.+|.+++=| |+...+.. ++. .++|.+|+ ++++ T Consensus 148 ~~~~~~~af~d~~~~G~G~~~v~~d~~~~~~~-------------~~~~~~~p~~i~~Dp~a~~~D~sDar~~~~~~~~~ 214 (776) T protein:vir:93 148 TPFERSMAFEETTKAGIGWLESQVQDENDGEP-------------IYAGAESWRNILWDSTYRRLDMDDCRYIFRVKWVD 214 (776) T ss_pred HHHHHHHHHHHhhhcCcceEEEEeeccCCCCc-------------eEeeccChhheeeccccccCCHHHHhhhhhhccCC Confidence 8888999999999999988766 44433332 111 12222221 1111 Q ss_pred ----------------------------eecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeec------------C Q lcl|Aclame:pro 195 ----------------------------KLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLN------------A 234 (535) Q Consensus 195 ----------------------------~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~------------~ 234 (535) ....+...+..-.+..........+......++||.+.. . T Consensus 215 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~E~~~r~~~~~~~~~~~ 294 (776) T protein:vir:93 215 LDVMLAIFPERAAQLRAAAVDNFETWGTDDIDGDDAMDSPEYERSMNSVTAGAVAYARKRVRMIEAWFRMPVRVQRLKGR 294 (776) T ss_pred HHHHHHhcCCchHHHHHhhhhcccccchhcccccccccccccccccccccccccccCCCeEEEEEEEEeeeeehhhcccc Confidence 000000000000000000000001111222334443321 0 Q ss_pred CceEEEEEEeeecc-------CC------------ccccccceeeeccCC--CccceeEEEEe-ccCCCcCCCCcchHHH Q lcl|Aclame:pro 235 EGNYQVERWRRETQ-------EE------------MYYSYSKHVPTDGNG--NPFKEIPFQFI-GPLDNNADIDHPPLLD 292 (535) Q Consensus 235 ~g~y~v~~w~~~~~-------~~------------~~~~~~~~~~~~~~~--~~l~~IP~v~~-~~~~~~~~~~~ppL~d 292 (535) .+.++..+|..... .. .............+. .+.+++|||++ +.......++..-+.. T Consensus 295 ~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~g~~~l~~~~~p~~~~~~Pfv~~~~~~~~~~~~~~G~v~~ 374 (776) T protein:vir:93 295 NSDFRGEVFDPNDERHVLEVESGRAVLAVSPMMRMHCAIMTTRDLMWAGPSPYRHNRYPFTPIWGFRRARDGMPYGVIRF 374 (776) T ss_pred cccccceeecccchHHHHHhhcCceeehheeeeeeEEEEEecchhhhccCCCCCCCccceEEecCceecccccccchHHh Confidence 00011111100000 00 000000000111122 34588999965 4444455566777889 Q ss_pred HHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCC--ccceeecCc-chhHHHHH Q lcl|Aclame:pro 293 LCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGA--TAGILQITP-NSVPFEAM 369 (535) Q Consensus 293 LA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~--~~~~~e~~~-~~l~~~~l 369 (535) +.+++..++...|-+.+++- ..++.+-.|.....++ .. ..... ++.++.+-.++ .+.+....+ .....+.+ T Consensus 375 ~~d~Q~~~N~~~s~~~~~l~--~~~~~~~~gav~~~d~-~~-~~~~r--p~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (776) T protein:vir:93 375 MRGMQDDVNKRLSKALYILS--TNKVLMEEGAVDDIDE-FR-REAAR--PDAVMTVKNGKLGAVKMDVDRDLAPAHLELA 448 (776) T ss_pred hhHHHHHHHHHHHHHHHhhc--CCceeeccccccchHH-HH-Hhccc--CCceeeeCCccccccccccCcCccHHHHHHH Confidence 99999999988888877753 4455555553322211 11 00011 22333332232 222222111 11123445 Q ss_pred HHHHHHHHHHhh---hhhcccccccchHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCC-------CC Q lcl|Aclame:pro 370 THKESQMIAMGA---NLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMAF----RKALRWANQFQTGI-------VN 434 (535) Q Consensus 370 ~~~e~qm~~lga---~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a~----~~~lr~~a~~~g~~-------~~ 434 (535) +.....|..+.+ .++...+ +.+++.+ .....+..-.|..+..++..+. +.+|.++..|+... .+ T Consensus 449 ~~~~~~i~~~tGi~~~~~G~~~-n~~Sg~ai~~~~~~~~~~~~~~~dn~~~~~~~~~~~~l~li~~~~~~~r~~ri~~~~ 527 (776) T protein:vir:93 449 SRSIQMIQQVGGVTDEMLGRTT-NAVSGVAIQARQEQGSVATNKLFDNLRLAFQQHGEKELSLIEQYMTEEKQFRITNSR 527 (776) T ss_pred HHHHHHHHHhhCcChHHhCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEEEEeecC Confidence 555444444322 2233333 3344433 3333333334555555555554 55666777776421 00 Q ss_pred CceeEEEEe------------------cccCCccCCHHHHHHHHHHHhcCCCCHH---HHHHH-HHhCCCCCccCCHHHH Q lcl|Aclame:pro 435 DETVEYNLN------------------TDFPAARLTPNERAELILEWQQGAITFK---EMRAG-LRRAGVASEDDAKAET 492 (535) Q Consensus 435 ~~~~~v~~n------------------~df~~~~~d~~~~~al~~l~~~G~is~e---t~~~~-L~r~gvl~~~~~~eee 492 (535) +..-.|.+| ..........+...+|+++++. +.-+ .+... +...++ -..++. T Consensus 528 ~~~~~v~in~~~~~nd~~~~~~dv~v~~~~~~~s~r~~~~~~l~ql~~~--~~p~~~~~~~~~~~e~~d~----p~~~e~ 601 (776) T protein:vir:93 528 GNPEYVTVNDGLPENDITRTKADFIIDEAEWRATMRQAAVAELMEVIGK--MPPEIALTMLDLLVENMDI----PNRDEL 601 (776) T ss_pred CCcceEEecccchhhhhccceeeEEEeecccchhHHHHHHHHHHHHHhh--cChhhHHHHHHHHHHhcCc----cchHHH Confidence 000012222 1111111133344455555432 1111 11010 111111 112222 Q ss_pred HHHHHhchhhcccCCCcCCCC------------------------CCCcc-----cccc---cccccCCCCCCCC Q lcl|Aclame:pro 493 EGKATVEFIAKTAAAGKVGDA------------------------ASGGT-----NKAK---LNNGNGGGNQAGN 535 (535) Q Consensus 493 ~~~i~~e~~~~~~~~~~~~~~------------------------~~~~~-----~~~~---~~~~~~~~~~~~~ 535 (535) ..+++.......+........ ..... ..+. ....--...+..+ T Consensus 602 ~~~l~~~~~~~~p~q~~~~~e~~~~qq~q~~~~q~q~~~~~a~~~~~qa~a~~~~aea~~~~aqa~~~~~~a~~~ 676 (776) T protein:vir:93 602 VKRIRAVNGQKDPDQDEPTPEEIAREQAQQQQQQYNDALAIATLEEQQAKARKAAAEAQVAEAKAKHISRMAIRE 676 (776) T ss_pred HHHHHHhhcccccchhhcchhHHHHHHHhhHHHHHHHHHhhhhhhHhhHHHHHHHHHHHHHhhhhhhhhhcchhh Confidence 222221110000000000000 00000 0000 0000000000000 No 83 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=98.71 E-value=9.4e-08 Score=59.11 Aligned_cols=443 Identities=12% Similarity=0.084 Sum_probs=177.1 Q ss_pred CCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhh--cc-- Q lcl|Aclame:pro 20 PQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRA--IF-- 95 (535) Q Consensus 20 ~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA--~~-- 95 (535) -|-|-.+| |+=. +..+.+...+.|.......-..|.|.. .+-+.+..........|| .+ T Consensus 1 ~~~~~~~~------------~~~~---~~~~~~~~~~~~a~~~~~~~~~w~~~~--~s~~~~i~~~~~~lr~RaRdl~rN 63 (530) T protein:vir:38 1 MKIPSLVG------------PDGK---TSLREYAGYHGGGGGFGGQLRGWNPPS--ESADAALLPNYSRGNARADDLVRN 63 (530) T ss_pred Cccceeec------------Cccc---cchHHHhhhhcccCCCCCcccccccCC--CCHHHHHHHHHHHHHHHHHHHHhc Confidence 11222222 1101 111112222322211111122344432 111112111222222222 22 Q ss_pred chhHHHHHHHHhhhhhccccccc-----------------cCHHHHHHHh--------ccCCCC-CCHHHHHHHHHHHHH Q lcl|Aclame:pro 96 YNVTARTLDGMMGQVFSRDPIRQ-----------------LPPALEAIVE--------DIDGEG-VSLDQQAKKALGYTM 149 (535) Q Consensus 96 ~n~~~~tv~~l~G~lF~k~p~~~-----------------~p~~l~~l~~--------d~d~~G-~~L~~~~~~~~~~~l 149 (535) .++.+..|+.++..+-....+.. +-..++.+|. .||-.| ++++++-+.+.+..+ T Consensus 64 n~~a~~av~~~~~nvVG~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~ 143 (530) T protein:vir:38 64 NGYAANAVQLHQDHIVGSFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHA 143 (530) T ss_pred ChHHHHHHHHHHHHhhCCCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHh Confidence 44566666655555533222111 1233555543 256666 589999999999999 Q ss_pred hhCcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 150 GFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 150 ~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) ..|-|+++.-+.+.+. ...| -+.++.|+.|=+..-.. +|.. |+.=++- |.++ ...-|. T Consensus 144 ~dGE~~~~~~~~~~~g----------~~~~~~lq~ie~d~l~~~~~~~-~~~~------i~~GIe~--d~~G--r~~aY~ 202 (530) T protein:vir:38 144 FNGELCVQATWDSDST----------RLFRTQFKMVSPKRVSNPNNIG-DTRN------CRAGVKI--NDSG--AALGYY 202 (530) T ss_pred hCCceEEEeeeccCCC----------CccceEEEEechhhcCCCCCCC-CCCe------eEeeeEE--CCCC--ceEEEE Confidence 9999999986543321 0112 36788998875543221 1111 1111111 1111 111122 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEE-eccCCCcCCCCcchHHHHHHHHHHHHh-hHHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQF-IGPLDNNADIDHPPLLDLCEVNIGHYR-NSAD 306 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~-~~~~~~~~~~~~ppL~dLA~ln~~hy~-~~sd 306 (535) ++. ..-.+..... ...++.. .+++.--|+. +...+.+-.-|.|.|..+...-..+-. ..|. T Consensus 203 i~~-------------~~~~~~~~~~-~~~~~~~---~~v~a~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~dae 265 (530) T protein:vir:38 203 VSD-------------DGYPGWMAQN-WTYIPRE---LPGGRPSFIHVFEPMEDGQTRGANAFYSVMEQMKMLDTLQNTQ 265 (530) T ss_pred Eee-------------ccCCCccccc-cceeeee---eccChhHeEeeccccCCCcccCCchHHHHHHHHHHHhHHHHHH Confidence 211 1111111100 0011100 0111111333 345566777788877664322111111 1122 Q ss_pred HHHHHHHhcCceeEeeCCCC-------------ccch-----------hccCcceeeecCcccccCCCCCccceeecCcc Q lcl|Aclame:pro 307 YEEMAFVAGQPTAFFTGLTK-------------DWVE-----------DVFKDFKVHLGSRAIIPLPQGATAGILQITPN 362 (535) Q Consensus 307 l~~~l~~~~~P~~~~~G~~~-------------~~~~-----------d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~ 362 (535) +..+ -+.+.-..+++.-.. +... +......+.++++++..|++|.++++.++... T Consensus 266 l~~a-~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p 344 (530) T protein:vir:38 266 LQSA-IVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGARVPHLLPGDSLNLQSAQDT 344 (530) T ss_pred HHHH-HHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceeccCceeeecCCCCeeeeeCCCCC Confidence 2222 333333444432111 0000 01122357789999999999999999998854 Q ss_pred hhH-HHHHHHHHHHHHH---Hhhhhhccccccc--chH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcC Q lcl|Aclame:pro 363 SVP-FEAMTHKESQMIA---MGANLLVKSGGNR--TFG-EAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQT 430 (535) Q Consensus 363 ~l~-~~~l~~~e~qm~~---lga~~l~~~~~~~--ta~-~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g 430 (535) +.. ...++.+...|++ +...++..+.... ++. ++.++.... .......+. -.++..|+ .|-..| T Consensus 345 ~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~---~~~~q~~~~~~~~~pi~~~wl~-~av~~G 420 (530) T protein:vir:38 345 DNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAY---FMGRRKFVASRQACQMFLCWLE-EAIVRR 420 (530) T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHH-HHHHcC Confidence 433 3445555555433 2234455543222 222 222333222 222333332 23333333 122223 Q ss_pred CCCCCcee--EEE------EecccCCc---cCCH-HHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHh Q lcl|Aclame:pro 431 GIVNDETV--EYN------LNTDFPAA---RLTP-NERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATV 498 (535) Q Consensus 431 ~~~~~~~~--~v~------~n~df~~~---~~d~-~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~ 498 (535) ...-+... .+. ++-.|... -+|+ .++++...++++|..|++.... ++| .+ ++++.+.++. T Consensus 421 ~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a---~~G-~D----~~~v~~q~a~ 492 (530) T protein:vir:38 421 VVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECA---KRG-DD----YQEIFAQQVR 492 (530) T ss_pred CccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHH---HcC-CC----HHHHHHHHHH Confidence 22111100 000 01112211 2344 4899999999999999996654 445 33 4444444433 Q ss_pred chhh-----cccCCCcCCCCC-CCcccccccccccCCC Q lcl|Aclame:pro 499 EFIA-----KTAAAGKVGDAA-SGGTNKAKLNNGNGGG 530 (535) Q Consensus 499 e~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 530 (535) |..- .+.......+.+ +..+...+...|++|. T Consensus 493 e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~d~~~~a 530 (530) T protein:vir:38 493 ESMERRAAGLNPPAWAAAAFEAGVKKSNEEEQDGARAA 530 (530) T ss_pred HHHHHHHcCCCCCCCcccccCCCCCCCCCCCCCCCCCC Confidence 3211 111111111111 1111111111222222 No 84 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=98.60 E-value=2.1e-07 Score=57.25 Aligned_cols=440 Identities=10% Similarity=0.060 Sum_probs=198.6 Q ss_pred CC--C--CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhc----cchhHHHHH Q lcl|Aclame:pro 32 LP--N--VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAI----FYNVTARTL 103 (535) Q Consensus 32 M~--~--v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~----~~n~~~~tv 103 (535) |- | |....|...+...........|.|...-+. ..+-| +.-+.+.+....-.....||- =.++.+.+| T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~--~~~~~--~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av 76 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRT--HKARR--ENRTADQLSQYGAVSLREQARYLDNNHDLVIGVF 76 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccc--cCCCC--CCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 55 3 557889888888888887778877654322 12222 222222222111122222221 245666666 Q ss_pred HHHhhhhhcc-----ccccc---------cCHHHH----HHHhccCCCCC-CHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 104 DGMMGQVFSR-----DPIRQ---------LPPALE----AIVEDIDGEGV-SLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 104 ~~l~G~lF~k-----~p~~~---------~p~~l~----~l~~d~d~~G~-~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) +.++..+-.. .|... +-..++ .|.++||-.|. +++++.+.+.+..+..|-|++..-+.... T Consensus 77 ~~~~~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~ 156 (502) T protein:vir:79 77 DKLEERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRIN 156 (502) T ss_pred HHHHHhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccC Confidence 6555554432 12221 112233 35678999885 79999999999999999999998654322 Q ss_pred cccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCce---EEE Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGN---YQV 240 (535) Q Consensus 165 ~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~---y~v 240 (535) ... .....| -|.+++|+.|-+- ..+|. .++.=+ +.+.+|. |++ T Consensus 157 ~~~------~g~~~~l~lq~iepd~l~~~---~~~~~------~i~~GV------------------e~d~~Gr~~aY~i 203 (502) T protein:vir:79 157 SLT------PSAGVHFWLEALEPDFIPMT---SDESN------RLNQGV------------------FVDDWGRPEKYLV 203 (502) T ss_pred ccC------CCcccceEEEEecchhcCCC---CCCCC------eeEeee------------------EECCCCceEEEEE Confidence 100 001123 5678888887332 11221 111111 1222332 221 Q ss_pred EEEeeeccCCccccccceeeeccCCCccceeE---EEE-eccCCCcCCCCcchHHHHHHHH--HHHHhhHHHHHHHHHHh Q lcl|Aclame:pro 241 ERWRRETQEEMYYSYSKHVPTDGNGNPFKEIP---FQF-IGPLDNNADIDHPPLLDLCEVN--IGHYRNSADYEEMAFVA 314 (535) Q Consensus 241 ~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP---~v~-~~~~~~~~~~~~ppL~dLA~ln--~~hy~~~sdl~~~l~~~ 314 (535) ++.. ++. .....+..|| |+. +...+.+-.-|.|.|..+...- +.-|. .+.+..+.--+ T Consensus 204 --~~~h-Pgd------------~~~~~~~rvpA~~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~~~-dael~~a~i~A 267 (502) T protein:vir:79 204 --YKSR-PVS------------GRQMETKEVDAERMLHLKFVRRLHQMRGTSLLSGVLIRLSALKEYE-DSELTAARIAA 267 (502) T ss_pred --eecC-CCC------------CcccceeEechhheEEeecccCCccccCCchHHHHHHHHHHHhHHH-HHHHHHHHHhh Confidence 1111 111 0112334566 443 3556677778888877643221 12222 23333333333 Q ss_pred cCceeEeeCCCCccc----hhccCcceeeecCcccc-cCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhc Q lcl|Aclame:pro 315 GQPTAFFTGLTKDWV----EDVFKDFKVHLGSRAII-PLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLV 385 (535) Q Consensus 315 ~~P~~~~~G~~~~~~----~d~~~~~~i~iG~~~~~-~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~ 385 (535) .+...+-+...++.. .+......+.+++++++ .|++|.+++++++...+... ..++.+..+|++ +....+. T Consensus 268 ~~~~fi~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt 347 (502) T protein:vir:79 268 ALGMYIRKGDGQSYEPDGNGSKENERELTIQPGIIYDDLKPGEEIGMVKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTA 347 (502) T ss_pred hheeeeecCCCcccccccCCCCCccccccccCCccccccCCCceeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHh Confidence 444333332221111 11223345778888876 48999999999987544333 444444444433 2233444 Q ss_pred cccc-ccchH-HHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHcCCCCCCc--eeEEEEecccCCcc---CCH-HH Q lcl|Aclame:pro 386 KSGG-NRTFG-EAQQEEASEQSILSA-CT-KNVSMAFRKALRWANQFQTGIVNDE--TVEYNLNTDFPAAR---LTP-NE 455 (535) Q Consensus 386 ~~~~-~~ta~-~a~~~~~~~~S~L~~-~a-~~~~~a~~~~lr~~a~~~g~~~~~~--~~~v~~n~df~~~~---~d~-~~ 455 (535) .+.. +=++. .+.+++.......+. ++ .-|.-.++..|+.+ ...|...-+. .-.-.++-+|.... +|+ .+ T Consensus 348 ~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a-~l~G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke 426 (502) T protein:vir:79 348 RNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQA-VASGVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKE 426 (502) T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCCCCCchhhcceeeecCCccccChHHH Confidence 4432 21222 122222222222222 11 12222233333322 1223221111 00111122232222 344 48 Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhh--cccCCCc--CC-CCCCCccccccc-ccccCC Q lcl|Aclame:pro 456 RAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIA--KTAAAGK--VG-DAASGGTNKAKL-NNGNGG 529 (535) Q Consensus 456 ~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~--~~~~~~~--~~-~~~~~~~~~~~~-~~~~~~ 529 (535) +++...++.+|..|++.... ++| . +++++.+.++.|..- ...+... +. +.+++....... .+.+++ T Consensus 427 ~~a~~~~i~~Gl~t~~~~~a---~~G-~----D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~e~~~~~~ 498 (502) T protein:vir:79 427 AEAWKIQIRGGAATESDWVR---AGG-R----NPDDVKRRRKAEIDENRKLDLVFDTDPASDKGGSSAATKRQEPQHTDD 498 (502) T ss_pred HHHHHHHHHcCCCCHHHHHH---HcC-C----CHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 99999999999999996554 445 2 455555444443221 1111111 10 111111111111 111222 Q ss_pred CCCC Q lcl|Aclame:pro 530 GNQA 533 (535) Q Consensus 530 ~~~~ 533 (535) .++. T Consensus 499 ~~e~ 502 (502) T protein:vir:79 499 QSEE 502 (502) T ss_pred CCCC Confidence 2222 No 85 >protein:vir:95449 Length: 584 # NCBI annotation: hypothetical protein ORF047 # Family: family:all:1548 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294640;genbank:gi:149408206;genbank:GeneID:5237016 Probab=98.60 E-value=1.2e-07 Score=58.59 Aligned_cols=461 Identities=15% Similarity=0.111 Sum_probs=206.7 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~ 79 (535) |+-|-. |.|+ +-.+|-.-...+..|+...+...= ...|++...-|. .++ T Consensus 1 ~~~~~~----~~~~--------------------~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~el~~y~~------a~~ 50 (584) T protein:vir:95 1 MSVKVA----ELNS--------------------LLVRDSSAQWVAYLWDRFNNQRRQKIEEWKELRNYVF------ATD 50 (584) T ss_pred CCcchh----hhhh--------------------hccccchHHHHHHHHHHHHhhhchhhccCHHHHHHHH------hhh Confidence 111100 0010 111333333445566665555432 222333222111 111 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhh----hccccccc----cCH--------HHHHHHhccCCCCCCHHHHHHH Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQV----FSRDPIRQ----LPP--------ALEAIVEDIDGEGVSLDQQAKK 143 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~l----F~k~p~~~----~p~--------~l~~l~~d~d~~G~~L~~~~~~ 143 (535) .++...=+...+..+|.|.+..+++.++..+ |..+--++ +|+ .++.+.+|== .=.++..-++. T Consensus 51 ~~~~~~~~~~~r~~~~~~k~~~~~~~i~~~l~~~~Fp~~~w~~~v~~~~~~~~~~~~~ai~~~i~dkl-~e~~~~~~~~~ 129 (584) T protein:vir:95 51 TTTTSNQGLPWKNSTTLPKLCQIRDNLHSNYFSSLFPNDDWLRWVGYGKGDSTKTKAKAIQAYMSNKC-RESHFRTEVSK 129 (584) T ss_pred hhhhhhcccccccccchhHHHHHHHHHHHHHHHhhcCccceeeeecCCCchhhHHHHHHHHHHHhhhh-hhccHHHHHHH Confidence 1122222333345678888888887666655 43322121 122 2334432210 11278888999 Q ss_pred HHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEE-EEE------------ Q lcl|Aclame:pro 144 ALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVV-IQE------------ 210 (535) Q Consensus 144 ~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~-l~E------------ 210 (535) .++.++.+|.|.+-|..-..=.-....+....-.+|++..++|.++. |.-.-.+ ...--.++ .+. T Consensus 130 ~i~d~~~~G~~~~k~~~~~~~~e~~e~~~v~~~~~prieriSP~d~~-~Dpsa~~-i~d~~fivrs~~T~~~L~~l~~~~ 207 (584) T protein:vir:95 130 LIYDYIDYGNAFATVSFEAKYKEMTDGTLVPDYIGPRLVRISPLDIV-FNPLATS-ISDTFKIVRSVKTKGELMRLAQDE 207 (584) T ss_pred HHHhhccCCceEEEEeEeecceeeeccccccccccceEEeeChhhee-ecCCCCC-ccchhhhhhhhhhHHHHHHHHhhc Confidence 99999999999998854321000001111122447999999999887 5532210 00000111 000 Q ss_pred ----------------------EEeecCCCcc---c-------cee--eEEEEEeecCCceEEEEEEeeeccCCc-c--- Q lcl|Aclame:pro 211 ----------------------NVLAQDDGFE---T-------TYV--QQWRVLQLNAEGNYQVERWRRETQEEM-Y--- 252 (535) Q Consensus 211 ----------------------~~~~~~d~f~---~-------~~~--~~~rvl~l~~~g~y~v~~w~~~~~~~~-~--- 252 (535) +..++-+++. . ... ..+.||+ .||.| |.++..+.. . T Consensus 208 ~~~~y~~d~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ey~~~~~V~vl~--~~g~~----~~~~~~e~~~~~iv 281 (584) T protein:vir:95 208 PEQSYWLEALKRREEICRHLGGYSVEDFDKAAGFDVDGFGNLYEYYMSDWVEILE--FYGDY----HDKETGELQTNRII 281 (584) T ss_pred CccccchHHHHHHHHhccCCCCCcccccccccccccccccccccccCCceeEEEe--ecccc----cccccCCCcccceE Confidence 0000001111 0 000 1133333 12311 111111100 0 Q ss_pred --ccccceeeeccCCCccceeEEEEec-cCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccc Q lcl|Aclame:pro 253 --YSYSKHVPTDGNGNPFKEIPFQFIG-PLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWV 329 (535) Q Consensus 253 --~~~~~~~~~~~~~~~l~~IP~v~~~-~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~ 329 (535) ......+.......+.+.+||+... -......+|.+++.-+.+++..+.-..--+-..+..+..|++...+... T Consensus 282 ~v~~g~~iIR~~~np~~~~~~PF~~~~~~p~~~s~yG~gi~~ll~d~Q~~lna~~r~~iDnl~l~~~pv~k~~~~~~--- 358 (584) T protein:vir:95 282 TVVDRSTEVRNESIPTWFGSAPIYHVGWRFRPDNLWAMGPLDNLVGMQYRIDHLENAKADAVDLIIQPPLKIIGEVE--- 358 (584) T ss_pred EEEeccEEEEeeecCCCCCCCCEEEEcceeeeccccCCCchhhhhhHHHHHhHHHHHHHHHHHHhcCcceeeccccc--- Confidence 1111122223555778999999764 4456677888888777777776664444444445566778665554321 Q ss_pred hhccCcceeeecCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHHH-hhhhhc---ccccccchHHHHHHHHHH Q lcl|Aclame:pro 330 EDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIAM-GANLLV---KSGGNRTFGEAQQEEASE 403 (535) Q Consensus 330 ~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~l-ga~~l~---~~~~~~ta~~a~~~~~~~ 403 (535) .+..|++..+.....+...++++....+. ...|+.++..|-.+ |+..-. .+.+++|++..+.-.... T Consensus 359 -------~~~~~pg~~~~~~~~~~~q~~~p~a~~~~s~~~~lq~~e~~me~~sGvp~~~~G~~~~~~~TAtg~s~l~naa 431 (584) T protein:vir:95 359 -------EFVWGPGAEIHLDQGGDVQEIAKNVNYIINADNQIQMLEDRMELYAGAPREAMGIRTPGEKTAFEVQQLGNAA 431 (584) T ss_pred -------hhcccCCceeecCCCCCcceecCchhhhhHHHHHHHHHHHHHHhhhCCChhhcccccchhhhHHHHHHHHHHH Confidence 13456777776665556677776543332 35677777777554 333322 234567777765544455 Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCC-ceeEEE----------------EecccCCcc--CC-----HHHHHH Q lcl|Aclame:pro 404 QSILSACTKNVSMAF-RKALRWANQFQTGIVND-ETVEYN----------------LNTDFPAAR--LT-----PNERAE 458 (535) Q Consensus 404 ~S~L~~~a~~~~~a~-~~~lr~~a~~~g~~~~~-~~~~v~----------------~n~df~~~~--~d-----~~~~~a 458 (535) +..+..++..+++.+ ++++.++-+|.....+. +.+.+. +.-+|.... .. +|.++. T Consensus 432 ~~~~r~~~~~f~~~ll~~l~~ll~~~~~~nmd~~~~vr~~n~e~~~~~f~~i~r~Dl~g~~~~va~Ga~~~~~keq~~q~ 511 (584) T protein:vir:95 432 GRIFQEKVTTFEVELLEPVLNAMLETATRNMDGSDVIRVMDTDLGVKEFMSVTREDITANGKIRPIGARHFGKQAQDLQN 511 (584) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCceeeeccccccccccccChhhhccCeeEEeehhhHHHHHHHHHHH Confidence 678888888888777 77666666552111111 112111 111222211 11 233444 Q ss_pred HHHHHh-------cCCCCHHHHHHHHHhCCCCCc------cCCH-H--HHHHHHHh-c----hhhcccCCCcC Q lcl|Aclame:pro 459 LILEWQ-------QGAITFKEMRAGLRRAGVASE------DDAK-A--ETEGKATV-E----FIAKTAAAGKV 510 (535) Q Consensus 459 l~~l~~-------~G~is~et~~~~L~r~gvl~~------~~~~-e--ee~~~i~~-e----~~~~~~~~~~~ 510 (535) +....| .+.++...+.+.|.+.+-++. +... + +.+..++. + ..++.++-+.. T Consensus 512 l~~ilq~~~~~~i~p~~~~~~l~~~ladl~~~p~~~~~~~~~~~~~Q~~~q~~~~~~q~~~~~~~~~~~~~~~ 584 (584) T protein:vir:95 512 LVGIFNSQIGQMILPHTSGKALATFVDDVTGLQGYEIFRPNVAVAEQAETQSLVAQAQEDLQLQAQMPAEGAI 584 (584) T ss_pred HHHHHHhhhhhhccccchHHHHHHHHHHHhCCCcccccCCCcccchhHHHHhhhHHHHHHHHHHHhhhhccCC Confidence 444444 344555566555544322321 0000 0 01111000 0 00111111111 No 86 >protein:vir:2198 Length: 536 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_041995;swissprot:sw:p03728;genbank:gi:9627467;goa:P03728;uniprot:P03728;genbank:GeneID:1261033 Probab=98.57 E-value=2.7e-07 Score=56.58 Aligned_cols=459 Identities=12% Similarity=0.075 Sum_probs=190.2 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH----HH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD----GM 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~----~l 106 (535) |++ .+....-.....+|+.+++--.- ...|++-..-.||..-..+.+.+.. ++ .+ .|-+...+.++ +| T Consensus 1 m~~-~~~~~~~~~~~~r~~~lk~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~-~~-~~----~~dst~~~a~~~Laa~l 73 (536) T protein:vir:21 1 MAE-KRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNAST-DY-QT----PWQAVGARGLNNLASKL 73 (536) T ss_pred Ccc-hhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccc-cc-cc----cccccHHHHHHHHHHHH Confidence 776 44455555666666665443211 4456666666677643333222211 11 11 23333344444 44 Q ss_pred hhhhhccccc--cccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 107 MGQVFSRDPI--RQLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 107 ~G~lF~k~p~--~~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) .+.+|--.|= +.+++ .++.+++.|.. ..++++.-+..++.+.+.+|.+.+++|-+... T Consensus 74 ~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~~~~ 153 (536) T protein:vir:21 74 MLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEPEGS 153 (536) T ss_pred HHhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeCCCC Confidence 4444421121 11111 12222222211 23567888888999999999999999855432 Q ss_pred cccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccce------------eeEEEEE Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETTY------------VQQWRVL 230 (535) Q Consensus 165 ~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~~------------~~~~rvl 230 (535) .. -++..|+-.++ -....+ ...+.-|..++.+... ...|+... ++-|-+. T Consensus 154 ~~------------~~f~~~pl~~~---~v~~d~-~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~v 217 (536) T protein:vir:21 154 NY------------NPMKLYRLSSY---VVQRDA-FGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHI 217 (536) T ss_pred ce------------eeEEEEEcCeE---EEeeCC-CCCeeEEeeeeeccHHHHHHhhhhhhcccccccccccceeEEEEE Confidence 21 14555665443 233332 3344445555544322 23343321 1222222 Q ss_pred eecCC-ceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccC-CCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 231 QLNAE-GNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPL-DNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 231 ~l~~~-g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~-~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) .+..+ +.| .|..+. .+..++-..+..++..-||+++... ..+...|.+|..+...-...+...+-..- T Consensus 218 ~~~~~~~~~---~~~~e~-------~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 287 (536) T protein:vir:21 218 YLDEDSGEY---LRYEEV-------EGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIV 287 (536) T ss_pred EEecCCCcE---EEEecc-------CCeeeccccCccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 22222 112 111111 1122333445445666666654332 34456677776554433333333333333 Q ss_pred H-HHHHhcCceeEeeCCCCccchhccCcce-eeecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHH-Hhhh Q lcl|Aclame:pro 309 E-MAFVAGQPTAFFTGLTKDWVEDVFKDFK-VHLGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIA-MGAN 382 (535) Q Consensus 309 ~-~l~~~~~P~~~~~G~~~~~~~d~~~~~~-i~iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~-lga~ 382 (535) . +...+..|.++-.+... .+.. +..|++.++.- ...+.+.++.. +..+ ..+.+++++++|.. .-.. T Consensus 288 ~~~~~a~~~~~lv~p~g~~-------~~~~~~~~~~g~~v~g-~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~ 359 (536) T protein:vir:21 288 KMSMISSKVIGLVNPAGIT-------QPRRLTKAQTGDFVTG-RPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLN 359 (536) T ss_pred HHHHHHhcCCcccCccccc-------chhhhccCCCcceecC-CcccceeeeccccccchHHHHHHHHHHHHHHHHHhhh Confidence 3 33334445444332111 1112 23344444331 11233344432 2233 35678888888754 2222 Q ss_pred hh-cccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCC--CCCceeEEEEecccCCccCCHH Q lcl|Aclame:pro 383 LL-VKSGGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQTGI--VNDETVEYNLNTDFPAARLTPN 454 (535) Q Consensus 383 ~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~g~~--~~~~~~~v~~n~df~~~~~d~~ 454 (535) ++ ..+....||++...+.......|.-+-.++.+ .+++++.++-+ .|.. ...+-+++++-. +...---.+ T Consensus 360 ~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r-~g~lP~~p~~~v~~~~vs-~l~~l~r~~ 437 (536) T protein:vir:21 360 SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQA-TQQIPELPKEAVEPTIST-GLEAIGRGQ 437 (536) T ss_pred hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCChhhccceEEe-cHHHHHHHH Confidence 23 34555689999887665555555554444433 33445554433 2221 122222333211 111100122 Q ss_pred HHHHHHHHHh---------cC-CCCHHHHHHHH-HhCCCCCc-cCCHHHHHHHHHhchhhc------ccC-C-CcCCCCC Q lcl|Aclame:pro 455 ERAELILEWQ---------QG-AITFKEMRAGL-RRAGVASE-DDAKAETEGKATVEFIAK------TAA-A-GKVGDAA 514 (535) Q Consensus 455 ~~~al~~l~~---------~G-~is~et~~~~L-~r~gvl~~-~~~~eee~~~i~~e~~~~------~~~-~-~~~~~~~ 514 (535) +++.++...+ .. .|....+.+.+ ...||-+. -...+|+...+.++...+ ..+ + +.-.... T Consensus 438 ~~~~l~~~~~~la~~~Pe~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~ 517 (536) T protein:vir:21 438 DLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQAT 517 (536) T ss_pred HHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 3333333222 12 24445555544 44677332 333444444443331110 000 0 0111111 Q ss_pred CCcccccccccccCCCCCC Q lcl|Aclame:pro 515 SGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 515 ~~~~~~~~~~~~~~~~~~~ 533 (535) .+.-..+..-+..|-+|.- T Consensus 518 ~~~~~~~~~~~~~g~~~~~ 536 (536) T protein:vir:21 518 ASPEAMAAAADSVGLQPGI 536 (536) T ss_pred cChhhHHhhhhccccCCCC Confidence 1111111122222222222 No 87 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=98.50 E-value=4.3e-07 Score=55.50 Aligned_cols=459 Identities=11% Similarity=0.032 Sum_probs=190.5 Q ss_pred CCcc----------------------------hhhhhh-hhhcceecCCCCC---CC-CcccccCCCCCccCHHHHHHHH Q lcl|Aclame:pro 1 MARK----------------------------RTTIRR-DVQSKVLIPPQAP---PT-SGLGPSLPNVGYQRVEFGEMLP 47 (535) Q Consensus 1 ~~~~----------------------------~~~~~~-~~~~~~~~~~~~~---~~-~~~~~~M~~v~~~hp~y~~~~~ 47 (535) .-|| +.++.. -.+.-+-|++.+| ++ -|+-+.|+ -+..+..+..+. T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~d~~~~~~~~~~- 81 (537) T protein:vir:10 4 FWRKKTVEAVQSSIAERIEPRVGIFGAGDDEKPFTRAQLVHQTMMAIRDHAIAMMPKVDGSHPDMA-MDGLDVEGGTFS- 81 (537) T ss_pred ccccccccccccccccccccccCCCcccchhhHHHHHHhhhhccCCCCCccCcccccccccccchh-ccccccchhhhh- Confidence 1111 111111 1111222222221 11 23334444 233332222211 Q ss_pred HHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH------ Q lcl|Aclame:pro 48 KWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP------ 121 (535) Q Consensus 48 ~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~------ 121 (535) .+.|+..-.....-|.+.- +. . .+.+..|.. ....+.+|+..+.-+++++..++..+ T Consensus 82 -------~~~~~~~~~~~~~~~~~~~--~~-~---~~l~a~Y~~----~~l~r~iVd~~A~d~~r~~~~i~~~~~~~~~~ 144 (537) T protein:vir:10 82 -------AYANPNLSEGLVLWYAQQA--FI-G---HQMCALIAT----HWLVNKACSQMPRDAMRKGYKIISDDGNELDP 144 (537) T ss_pred -------hhccccccchhhhhccccC--Cc-c---HHHHHHHHh----CchhhhhhhhhhHHhhcCCceeecCCcccccH Confidence 1122222222222333321 11 1 122333322 46788899999999999998885421 Q ss_pred ----HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCc-----ccchHHHHhccCCcEEEEechhhhhcc Q lcl|Aclame:pro 122 ----ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGR-----PVTVLEQKLGLYRPTITLVHPTSIINW 192 (535) Q Consensus 122 ----~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~-----~~t~ad~~~~~~rPy~~~~~~~~Ii~w 192 (535) .++..++. ..+.+-+..+.+.+..+|.+++++.-...+. +... +-...+..-++..++|..+-- T Consensus 145 ~~~~~l~~~~~~-----l~~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~-~~i~kg~~k~l~vidp~~~~~- 217 (537) T protein:vir:10 145 KDAKFIDRYDRA-----FNIKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNI-DGVMPGAYKGIVQIDPYWCAP- 217 (537) T ss_pred HHHHHHHHHHHH-----hhHHHHHHHHHHhcccccceEEEEeecCcCCccccccccc-ccccccceeEEEEechhhccc- Confidence 23333333 3577888888888888998888876432211 1100 000111112344444432210 Q ss_pred eeeecCCccceeEEEEEEEEeec-CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCcccee Q lcl|Aclame:pro 193 RTKLVGGKSVISLVVIQENVLAQ-DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEI 271 (535) Q Consensus 193 ~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~I 271 (535) ....+...++ ...|+.-. .|++ .|. .++. ..+. .-.++++..+ T Consensus 218 -------------~~~~~~~~dp~sp~fg~P~--~y~v-----~g~---~iH~------------SRli-~f~g~~~p~~ 261 (537) T protein:vir:10 218 -------------LLDAQASSNPVSMHFYEPT--YWLI-----NGK---KYHR------------SHLA-IYINDEVVDF 261 (537) T ss_pred -------------ccchhhhccCCccccCCce--eeee-----cCe---Eecc------------eeEE-EecCCCCchh Confidence 0001111111 12343221 1111 000 0000 0000 0011222111 Q ss_pred EEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCc--cee--eecCccccc Q lcl|Aclame:pro 272 PFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKD--FKV--HLGSRAIIP 347 (535) Q Consensus 272 P~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~--~~i--~iG~~~~~~ 347 (535) . .......|.|.|..+-+--...-+...--..+++...+..+-+.|+..-..++.... ..+ .-+...++. T Consensus 262 ~------~~~~~~~G~Svlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~~~r~n~g~~~ 335 (537) T protein:vir:10 262 L------KPSYIYGGVPLPQQIMERVYAAERTANEGPMLAMTKRQTVLKVDAAQVLANKQQFDETMSWWTATRDNYQVRV 335 (537) T ss_pred h------hcccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcCHHHHHHHHHHHHhhcCCcceeE Confidence 1 111123567766555443333334444455667777777777766432111111100 000 013345566 Q ss_pred CCCC-CccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 LPQG-ATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGE---AQQEEASEQSILSACTKNVSMAFRKALR 423 (535) Q Consensus 348 lp~~-~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~---a~~~~~~~~S~L~~~a~~~~~a~~~~lr 423 (535) ++.+ .++..+...-.++ ...+....++|+....-.+..=.+..+++. ...+...=+..+.++..++..+++++++ T Consensus 336 id~e~e~~e~~~~~lsgl-~~~l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ 414 (537) T protein:vir:10 336 VDKDNEDVVQIDTTLNDL-DKVIMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQ 414 (537) T ss_pred ecCCCceeEEEeccCCCH-HHHHHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 6654 4455444433443 244555555554433222221122222221 1223333455677777788889999998 Q ss_pred HHHHHcCCCCCCceeEEEEecccCCccCCHHH-------HHHHHHHHhcCCCCHHHHHHHHHhC------CCCCccCCHH Q lcl|Aclame:pro 424 WANQFQTGIVNDETVEYNLNTDFPAARLTPNE-------RAELILEWQQGAITFKEMRAGLRRA------GVASEDDAKA 490 (535) Q Consensus 424 ~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~-------~~al~~l~~~G~is~et~~~~L~r~------gvl~~~~~~e 490 (535) ++.+-.... ...+++.+.......+.+. +++...++++|.|+.+++++.|+.- ++ .+....+ T Consensus 415 ll~~~~~~~----~~~~~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l-~~~~~~e 489 (537) T protein:vir:10 415 LVCRSHLRK----RIRVKVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSI-TPAMRPT 489 (537) T ss_pred HHHHhcCCC----CcceEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccc-cCCCChh Confidence 876543321 2245666555544433332 3567789999999999999999863 22 2222333 Q ss_pred HHHH-HHHhchh--hcccCCCcCC--CCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 491 ETEG-KATVEFI--AKTAAAGKVG--DAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 491 ee~~-~i~~e~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 533 (535) +++. .+..+.. ...+.++.+. .+..+..+..+....+|+...- T Consensus 490 d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 537 (537) T protein:vir:10 490 DAEDIDVDDEGKPVRIIEDQPAPSEMFGATSSGESANDPRDSGAAFED 537 (537) T ss_pred hhhcccCCccCCcCCCCCCCCCccccCCCCccccccCCCccCccccCC Confidence 3321 1111111 0011111111 1122222222333333333222 No 88 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=98.48 E-value=4.8e-07 Score=55.23 Aligned_cols=442 Identities=12% Similarity=0.064 Sum_probs=179.4 Q ss_pred cCCCCCC-CCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhh--- Q lcl|Aclame:pro 18 IPPQAPP-TSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRA--- 93 (535) Q Consensus 18 ~~~~~~~-~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA--- 93 (535) |+-+++| .+|+..-.+ ...+ ...+.|.......-..+.|.. .+.+.+....-+....|| T Consensus 1 ~~~p~~~~~~~~~~~~~------------~~~~---~~y~~~a~~~~~~~~~w~p~~--~s~~~~~~~~~~~lr~RaRdl 63 (533) T protein:vir:34 1 MKTPTIPTLLGPDGMTS------------LREY---AGYHGGGSGFGGQLRSWNPPS--ESVDAALLPNFTRGNARADDL 63 (533) T ss_pred CCCchhhhhhcccccch------------HHHH---HhhhhccCCCCCcccccccCC--CCHHHHHHHHHHHHHHHHHHH Confidence 3322322 222221111 1111 222222111111112233321 111111111111112222 Q ss_pred -ccchhHHHHHHHHhhhhhccccccc-----------------cCHHHHHHH----hc----cCCCCC-CHHHHHHHHHH Q lcl|Aclame:pro 94 -IFYNVTARTLDGMMGQVFSRDPIRQ-----------------LPPALEAIV----ED----IDGEGV-SLDQQAKKALG 146 (535) Q Consensus 94 -~~~n~~~~tv~~l~G~lF~k~p~~~-----------------~p~~l~~l~----~d----~d~~G~-~L~~~~~~~~~ 146 (535) .=.++.+..|+.++..+-....+++ +-..++.+| ++ ||-.|. +++++.+.+++ T Consensus 64 ~rNn~~a~~av~~~~~nvVG~Gi~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r 143 (533) T protein:vir:34 64 VRNNGYAANAIQLHQDHIVGSFFRLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVA 143 (533) T ss_pred HhcChHHHHHHHHHHHHhhCCCceeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHH Confidence 1256777777777666643322221 123344444 22 566664 89999999999 Q ss_pred HHHhhCcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 147 ~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) ..+..|-|+++.-+-+.++. ..| -+.+|+|+.|=+..-.. +|.. |+.=++- |.++ ... T Consensus 144 ~~~~dGE~f~~~~~~~~~g~----------~~~~~lq~ie~d~l~~~~~~~-~~~~------i~~GIe~--d~~G--r~~ 202 (533) T protein:vir:34 144 MHAFNGELFVQATWDTSSSR----------LFRTQFRMVSPKRISNPNNTG-DSRN------CRAGVQI--NDSG--AAL 202 (533) T ss_pred HHHhCCceEEEeeeccCCCC----------ccceEEEEechhhcCCCCCCC-CCCc------eEeeeEE--CCCC--CeE Confidence 99999999998755332211 112 36788998886543221 1211 1111111 1111 111 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeE---EEE-eccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIP---FQF-IGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP---~v~-~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) -|.++. ....+.... ..+.++. ...|| |+. +...+.+-.-|.|.|..+...-..+- T Consensus 203 aY~i~~-------------~~~~~~~~~-~~~~~~~------~~~v~a~~VlH~f~~~r~gQ~RGis~lapvl~~l~~l~ 262 (533) T protein:vir:34 203 GYYVSE-------------DGYPGWMPQ-KWTWIPR------ELPGGRASFIHVFEPVEDGQTRGANVFYSVMEQMKMLD 262 (533) T ss_pred EEEEee-------------cCCCCcccc-ccceeee------eeccChhHeeeeccccCCCcccCCchHHHHHHHHHHHH Confidence 222221 111111100 0011110 11122 232 34456667777887766432211111 Q ss_pred h-hHHHHHHHHHHhcCceeEee-CCCC------------ccch-----------hccCcceeeecCcccccCCCCCccce Q lcl|Aclame:pro 302 R-NSADYEEMAFVAGQPTAFFT-GLTK------------DWVE-----------DVFKDFKVHLGSRAIIPLPQGATAGI 356 (535) Q Consensus 302 ~-~~sdl~~~l~~~~~P~~~~~-G~~~------------~~~~-----------d~~~~~~i~iG~~~~~~lp~~~~~~~ 356 (535) . ..+.+..+.--+.+ ..+++ .... +... +......+.+++.++..|++|.+++| T Consensus 263 ~y~dael~~a~i~A~~-a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~ 341 (533) T protein:vir:34 263 TLQNTQLQSAIVKAMY-AATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAKVPHLMPGDSLNL 341 (533) T ss_pred HHHHHHHHHHHHhhhh-eeeeecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCceeeecCCCCeeee Confidence 1 12223333333333 34443 2111 0000 01122356789999999999999999 Q ss_pred eecCcchhHH-HHHHHHHHHHHH---Hhhhhhcccccccc--hH-HHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 357 LQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRT--FG-EAQQEEASEQSILSAC-T-KNVSMAFRKALRWANQ 427 (535) Q Consensus 357 ~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~t--a~-~a~~~~~~~~S~L~~~-a-~~~~~a~~~~lr~~a~ 427 (535) +++...+... ..+..+...|++ +...++..+..+.+ +. ++.++.......++.. + .-|.-.++..|+.+ - T Consensus 342 ~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a-i 420 (533) T protein:vir:34 342 QTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFVASRQASQMFLCWLEEA-I 420 (533) T ss_pred cCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H Confidence 9987544333 444444444433 22344555532222 22 2223333322222221 1 12223333333321 1 Q ss_pred HcCCCCCCcee--EEE------EecccCCc---cCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHH Q lcl|Aclame:pro 428 FQTGIVNDETV--EYN------LNTDFPAA---RLT-PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGK 495 (535) Q Consensus 428 ~~g~~~~~~~~--~v~------~n~df~~~---~~d-~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~ 495 (535) ..|...-+..+ .+. .+-+|... -+| ..++++...++.+|..|++.... ++| . ++++..+. T Consensus 421 l~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a---~~G-~----D~~ev~~q 492 (533) T protein:vir:34 421 VRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECA---KRG-D----DYQEIFAQ 492 (533) T ss_pred HcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHH---HcC-C----CHHHHHHH Confidence 22322111100 010 11122222 123 35899999999999999996654 445 2 45555544 Q ss_pred HHhchhh--cccCCCc-------CCCCCCCccccccccccc Q lcl|Aclame:pro 496 ATVEFIA--KTAAAGK-------VGDAASGGTNKAKLNNGN 527 (535) Q Consensus 496 i~~e~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~ 527 (535) +..|..- ...+... .....+...+.+..+.+| T Consensus 493 ~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 533 (533) T protein:vir:34 493 QVRETMERRAAGLKPPAWAAAAFESGLRQSTEEEKSDSRAA 533 (533) T ss_pred HHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCCcccCCCC Confidence 4443211 1111100 001111122222223333 No 89 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=98.45 E-value=6.1e-07 Score=54.66 Aligned_cols=455 Identities=13% Similarity=0.129 Sum_probs=189.0 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH----HH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD----GM 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~----~l 106 (535) |+.+.+.--.=......|+.+++--.= ...|++-..-.||..-..+.+.......+ .|-+...+.++ +| T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~------~~dst~~~a~~~Laa~l 74 (535) T protein:vir:33 1 MADSKRTGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYTT------PWQAVGARGLNNLASKL 74 (535) T ss_pred CChhhhhccChhHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCcccccccc------cccccHHHHHHHHHHHH Confidence 886553211112334445544442111 45566666666775422221111111111 23333334444 44 Q ss_pred hhhhhcccccc--ccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 107 MGQVFSRDPIR--QLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 107 ~G~lF~k~p~~--~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) .+.+|--.|=+ .+++ .++.+++.|.. ..++++.-+..++.+.+.+|.+.++++-+..+ T Consensus 75 ~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~ 154 (535) T protein:vir:33 75 MLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEPEGS 154 (535) T ss_pred HHhhcCCCcccccccChHHHhccccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecCCCC Confidence 44444211111 2222 13333332221 24568888888999999999999999854322 Q ss_pred cccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCccc------------ceeeEEEEE Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFET------------TYVQQWRVL 230 (535) Q Consensus 165 ~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~~------------~~~~~~rvl 230 (535) . ..+..|+-.++ -.... +...+.-|..++.+.-.. .+|+. +.++.|.+. T Consensus 155 ~-------------~~f~~~pl~~~---~v~~d-~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v 217 (535) T protein:vir:33 155 Y-------------NPMKLYRLSSY---VVQRD-AYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHV 217 (535) T ss_pred c-------------eeeEEEEcCee---EEeeC-CCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEE Confidence 1 23445554443 23332 233333354455443111 22221 222333333 Q ss_pred eecC-CceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 231 QLNA-EGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 231 ~l~~-~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) .++. .+.|.+..+. .+ ..+....++.+++.-||++... ...+...|.+|..+...-...+...+-..- T Consensus 218 ~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 287 (535) T protein:vir:33 218 YLDEESGDYLKYEEV---ED-------VEIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIV 287 (535) T ss_pred EeeCCCCcEEEEEEE---eC-------ccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 3322 2333221111 11 1111122333444455554332 234455677777665555555555665666 Q ss_pred HHHHHhcCceeEee--CCCCccchhccCcceee-ecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHHH--h Q lcl|Aclame:pro 309 EMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVH-LGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIAM--G 380 (535) Q Consensus 309 ~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~-iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~l--g 380 (535) ..++.+..|...+. |.. ....+. .|.+.++. ....+.+.+++. +..+ ..+.++++++++... . T Consensus 288 ~~~~~~~~p~~lv~~~g~~--------~~~~~~~~~~g~~v~-g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~ 358 (535) T protein:vir:33 288 KMSMISAKVIGLVNPAGIT--------QPRRLTKAQTGDFVP-GRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFML 358 (535) T ss_pred HHHHHHhcCceeecccccc--------chhhcccCCceeeec-CCcccceeeecccccchhHHHHHHHHHHHHHHHHHhh Confidence 66677777775543 211 112232 23333332 222344455543 2223 356788888887552 2 Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCC--CCCceeEEEEecccCCccCCH Q lcl|Aclame:pro 381 ANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQTGI--VNDETVEYNLNTDFPAARLTP 453 (535) Q Consensus 381 a~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~g~~--~~~~~~~v~~n~df~~~~~d~ 453 (535) -.+...+....||++...+..-....|.-+-.++.+ .+++++.++-+ .|.. .+.+.++++|-.-..... -. T Consensus 359 ~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r-~g~lP~~p~~~v~~~yis~La~aq-r~ 436 (535) T protein:vir:33 359 NSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQA-TSQIPELPKEAVEPTISTGLEAIG-RG 436 (535) T ss_pred hhcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCccceeEEEecHHHHHH-HH Confidence 222334556689999887766555555555555432 33445554433 2211 222333333321111000 11 Q ss_pred HHHHHHHHHHh---------cC-CCCHHHHHHHH-HhCCCCCc-cCCHHHHHHHHHhchhhc------ccC-CCcCCCCC Q lcl|Aclame:pro 454 NERAELILEWQ---------QG-AITFKEMRAGL-RRAGVASE-DDAKAETEGKATVEFIAK------TAA-AGKVGDAA 514 (535) Q Consensus 454 ~~~~al~~l~~---------~G-~is~et~~~~L-~r~gvl~~-~~~~eee~~~i~~e~~~~------~~~-~~~~~~~~ 514 (535) ++++.++...+ .. .|....+.+.+ ...||-.. -...+|+...+.++...+ ..+ +....... T Consensus 437 ~~~~~l~~~~~~la~~~P~~~d~~id~d~~~~~~a~~~Gvp~~~i~~~~ee~~~~~~q~~~~~~~~~~~~~~g~~~~~~~ 516 (535) T protein:vir:33 437 QDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGVENAAAAGGAGVGALA 516 (535) T ss_pred HHHHHHHHHHHHHHhhChhhhhccCCHHHHHHHHHHHcCCCHhHhcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchh Confidence 22333222221 11 24444444433 44666322 233344443333322111 011 01011110 Q ss_pred CCcccccccccccCCCCCCCC Q lcl|Aclame:pro 515 SGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+ -.+..+....+|= T Consensus 517 ~~~-----~~~~~~~~~~~g~ 532 (535) T protein:vir:33 517 TSS-----PEAMQGAAAKAGL 532 (535) T ss_pred hcC-----ChhHHHHHHhccC Confidence 000 0111122222222 No 90 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=98.43 E-value=7.1e-07 Score=54.30 Aligned_cols=441 Identities=11% Similarity=0.059 Sum_probs=180.3 Q ss_pred ccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhh----ccchhHHHHHHH Q lcl|Aclame:pro 30 PSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRA----IFYNVTARTLDG 105 (535) Q Consensus 30 ~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA----~~~n~~~~tv~~ 105 (535) -+|-+.....|.-......+. -.|.|....+ +....|..+ .+.+..........|| .=.++.+..|+. T Consensus 1 m~~~~~~~~a~~~~~~~~~~~---~~y~aa~~~~--~~~~~~~~s---~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~ 72 (495) T protein:vir:10 1 MNMTPSGYQSLASGLLVPVGA---SAYEGASGGH--RWQDIGDYG---PDTAVASGIQTLRARSHHNVRNNPWATNAVAT 72 (495) T ss_pred CCcccccccccchhhhhHHHh---hhhhccccCc--ccCCCCCCC---hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH Confidence 222222222222222222221 1232222111 111222211 1222222222222222 124566666666 Q ss_pred Hhhhhhccccccc-------cCHHH----HHHHhccCCCC-CCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHH Q lcl|Aclame:pro 106 MMGQVFSRDPIRQ-------LPPAL----EAIVEDIDGEG-VSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQK 173 (535) Q Consensus 106 l~G~lF~k~p~~~-------~p~~l----~~l~~d~d~~G-~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~ 173 (535) ++..+-....+.+ +-..+ +.|.++||-.| ++++++.+.+++..+..|-|++..-+.....+ T Consensus 73 ~~~~vVG~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g------- 145 (495) T protein:vir:10 73 WVAAAVGNGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEG------- 145 (495) T ss_pred HHHhhcCCCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCC------- Confidence 6555533222221 12223 34668899888 48999999999999999999998765433211 Q ss_pred hccCCc-EEEEechhhhhcceeee--cCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCC Q lcl|Aclame:pro 174 LGLYRP-TITLVHPTSIINWRTKL--VGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEE 250 (535) Q Consensus 174 ~~~~rP-y~~~~~~~~Ii~w~~~~--~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~ 250 (535) +..| -+.+++|+.|-+-.-.. .+|. .|+.=++- |.++... - |.+ ++.. ++. T Consensus 146 --~~~~~~lqliepd~l~~~~~~~~~~~g~------~i~~GIe~--d~~Gr~v--a-----------Y~i--~~~h-pgd 199 (495) T protein:vir:10 146 --LSVPLQLQIIEPDMLASDIPDETLPSGG------YVKGGIRF--SNGGKRK--A-----------YCF--YRNH-PAE 199 (495) T ss_pred --CccceEEEEechhhcCCCCCCCCCCCCC------EEEeceEE--CCCCceE--E-----------EEE--eecC-CCc Confidence 1123 56789999885432111 1110 11111111 1111111 1 221 1111 111 Q ss_pred ccccccceeeeccCCCccceeE---EEEeccCCCcCCCCcchHHHHHHHHHHHHhhHH--HHHHHHHHhcCceeEeeC-C Q lcl|Aclame:pro 251 MYYSYSKHVPTDGNGNPFKEIP---FQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSA--DYEEMAFVAGQPTAFFTG-L 324 (535) Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~IP---~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s--dl~~~l~~~~~P~~~~~G-~ 324 (535) .... .....+..|| |+.+...+.+-.-|.|.|..|.. ++.+.... .+..+ .+.+.-..+++. . T Consensus 200 ~~~~--------~~~~~~~rvpA~~vlH~f~~r~gQ~RGis~la~i~~--l~~l~~y~dael~~a-~i~A~~~~fi~~~~ 268 (495) T protein:vir:10 200 SSLI--------GDPVDTVWIKAEHVLHVTVLTVRSDAGAPWFQLLLR--LNELDQYEDAELVRK-KTAALFAAFIQEAT 268 (495) T ss_pred cccc--------ccccceeeechhheEeccccCCCcccCcchhHHHHH--HHHhhHHHHHHHHHH-HHhhhheeeeecCC Confidence 1100 0111233344 23222344555566664433322 22222222 22222 333444445542 1 Q ss_pred CCcc--------chhccCcceeeecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccccc--c Q lcl|Aclame:pro 325 TKDW--------VEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGG--N 390 (535) Q Consensus 325 ~~~~--------~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~--~ 390 (535) .++. ..+......+.+++.++..|++|.+.+++++...+... ..++.+...|++ +....+..+.. | T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~n 348 (495) T protein:vir:10 269 ADSTGGPTIGQPKRSKGGKRITGLNPGTLQYLQPGQEVKFSNPADVGTTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVN 348 (495) T ss_pred CccccccccCccccccCcccceecCCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccccc Confidence 1111 11122223466889999999999999999987544333 444444444432 22334444432 2 Q ss_pred cchH-HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHcCCCCCCceeE---EEEecccCCcc---CCH-HHHHHH Q lcl|Aclame:pro 391 RTFG-EAQQEEASEQSILSA--CTKN-VSMAFRKALRWANQFQTGIVNDETVE---YNLNTDFPAAR---LTP-NERAEL 459 (535) Q Consensus 391 ~ta~-~a~~~~~~~~S~L~~--~a~~-~~~a~~~~lr~~a~~~g~~~~~~~~~---v~~n~df~~~~---~d~-~~~~al 459 (535) =++. ++.++.......++. ++.. |.-.++..|+.+. ..|...-++... ....-+|.... +|+ .++++. T Consensus 349 YSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~-l~G~i~~p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~ 427 (495) T protein:vir:10 349 YSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAV-ASGAVVIPDYLQRRRYYNRVSWRTPRWEEVDPLKKHLAD 427 (495) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCchhhhHhhhccccccCCccccChHHHHHHH Confidence 2222 223333333333332 2322 2333444444222 234321111100 01122333332 343 489999 Q ss_pred HHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhh--cccCC--CcCCCCCCCcccccccccccCCCC Q lcl|Aclame:pro 460 ILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIA--KTAAA--GKVGDAASGGTNKAKLNNGNGGGN 531 (535) Q Consensus 460 ~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 531 (535) ..++.+|..|++.... ++| .+ ++++.+.++.|..- ...+. ..+...+.++.......+.+..+. T Consensus 428 ~~~i~~G~~s~~~~~a---~~G-~D----~~~v~~q~a~e~~~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 428 LGDVRAGFAPISDKQA---ERG-YD----MEELFDMISDANQLIDEYDLRLDSDPRYVNGSGAEQKSVMEAALNNE 495 (495) T ss_pred HHHHHcCCCCHHHHHH---HcC-CC----HHHHHHHHHHHHHHHHHcCCCCCCCCCcCCCccCCCCCCCCCCCCCC Confidence 9999999999996654 445 33 45544444443221 11111 111111111110000011110000 No 91 >protein:vir:10447 Length: 536 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848294;genbank:gi:30387485;genbank:GeneID:1733984 Probab=98.42 E-value=7.2e-07 Score=54.26 Aligned_cols=459 Identities=12% Similarity=0.063 Sum_probs=188.2 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH----HH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD----GM 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~----~l 106 (535) |++ .+....-.....+|+.+++--.= ...|++-..-.||..-..+.+.+. ....+ .|-+...+.++ +| T Consensus 1 m~~-~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~--~~~~~----~~dst~~~a~~~Laa~l 73 (536) T protein:vir:10 1 MAE-KRTGLAEDGAKSVYERLKNDRAPYETRAQNCAQYTIPSLFPKDSDNAS--TDYQT----PWQAVGARGLNNLASKL 73 (536) T ss_pred Ccc-hhhchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCccc--ccccc----cccccHHHHHHHHHHHH Confidence 776 44455555566666655442111 445666666667764333322211 11111 23333334444 44 Q ss_pred hhhhhccccc--cccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 107 MGQVFSRDPI--RQLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 107 ~G~lF~k~p~--~~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) .+.+|--.|= +.+++ .++.+++.|.. ..++++.-+..++.+.+.+|.+.+++|-+... T Consensus 74 ~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~e~~~~ 153 (536) T protein:vir:10 74 MLALFPMQTWMRLTISEYEAKQLLSDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFEALKQLVVAGNVLLYLPEPEGS 153 (536) T ss_pred HhhhcCCCcccccccChhhhhccccchhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEEeeCCCC Confidence 4445421121 11111 12222222211 23567888888999999999999999855432 Q ss_pred cccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccc------------eeeEEEEE Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETT------------YVQQWRVL 230 (535) Q Consensus 165 ~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~------------~~~~~rvl 230 (535) .. -++..|+-.++ -....+ ...+.-|+.++.+... ...|+.. .++-|-+. T Consensus 154 ~~------------~~~~~~pl~~~---~v~~d~-~G~vd~i~r~~~~t~~~l~~~fg~~~~~~~~~~~~~~~v~v~~~V 217 (536) T protein:vir:10 154 NY------------NPMKLYRLSSY---VVQRDA-FGNVLQMVTRDQIAFGALPEDIRKAVEGQGGEKKADETIDVYTHI 217 (536) T ss_pred ce------------eeEEEEEcCeE---EEeeCC-CCCeeEEeeeeeccHHHHHHhhhhhhcccccccCcccceEEEEEE Confidence 21 14555665443 233332 3334445555544321 1334322 12222222 Q ss_pred eecC-CceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccC-CCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 231 QLNA-EGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPL-DNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 231 ~l~~-~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~-~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) ++.. .+.|. |..+. .+..+....+..++..-||+++... ..+...|.+|..+...-...+...+-..- T Consensus 218 ~~~~~~~~~~---~~~e~-------~g~~v~~~~g~~~f~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 287 (536) T protein:vir:10 218 YLDEASGEYL---RYEEV-------EGMEVQGSDGTYPKEACPYIPIRMVRLDGESYGRSYIEEYLGDLRSLENLQEAIV 287 (536) T ss_pred EEecCCCcEE---EEEee-------cCccccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 2221 22232 11111 1122223344445556666644322 34455677776554433333333333333 Q ss_pred H-HHHHhcCceeEeeCCCCccchhccCcce-eeecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHH-Hhhh Q lcl|Aclame:pro 309 E-MAFVAGQPTAFFTGLTKDWVEDVFKDFK-VHLGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIA-MGAN 382 (535) Q Consensus 309 ~-~l~~~~~P~~~~~G~~~~~~~d~~~~~~-i~iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~-lga~ 382 (535) . +...+..|.++-.+... .+.. +..|++.++.- ...+.+.++.. +..+ ..+.+++++++|.. .-.. T Consensus 288 ~~~~~a~~~~~lv~p~g~~-------~~~~~~~~~~g~~v~g-~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~ 359 (536) T protein:vir:10 288 KMSMISSKVIGLVNPAGIT-------QPRRLTKAQTGDFVTG-RPEDISFLQLEKQADFTVAKAVSDAIEARLSFAFMLN 359 (536) T ss_pred HHHHHHhcCCcccCccccc-------chhhhccCCCcceecC-CcccceeeeccccccchHHHHHHHHHHHHHHHHHhhh Confidence 3 33334445444332111 1112 23344444331 11233344432 2233 35678888888754 2222 Q ss_pred hh-cccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCC--CCCceeEEEEecccCCccCCHH Q lcl|Aclame:pro 383 LL-VKSGGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQTGI--VNDETVEYNLNTDFPAARLTPN 454 (535) Q Consensus 383 ~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~g~~--~~~~~~~v~~n~df~~~~~d~~ 454 (535) ++ ..+....||++...+.......|.-+-.++.+ .+++++.++-+ .|.. ...+-+++++-. +...---.+ T Consensus 360 ~l~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r-~g~lP~~p~~~v~~~~vs-~l~~l~r~~ 437 (536) T protein:vir:10 360 SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQA-TQQIPELPKEAVEPTIST-GLEAIGRGQ 437 (536) T ss_pred hcccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCChhhccceEEe-cHHHHHHHH Confidence 23 34555689999887665555555554444433 33445554433 2221 122222333211 111100122 Q ss_pred HHHHHHHHHh--c-------C-CCCHHHHHHHH-HhCCCCCc-cCCHHHHHHHHHhchhhc------ccC-C-CcCCCCC Q lcl|Aclame:pro 455 ERAELILEWQ--Q-------G-AITFKEMRAGL-RRAGVASE-DDAKAETEGKATVEFIAK------TAA-A-GKVGDAA 514 (535) Q Consensus 455 ~~~al~~l~~--~-------G-~is~et~~~~L-~r~gvl~~-~~~~eee~~~i~~e~~~~------~~~-~-~~~~~~~ 514 (535) +++.++...+ + . .|....+.+.+ ...||-+. -...+|+...+.++...+ ..+ + +.-.... T Consensus 438 ~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gv~p~~~irt~eev~~~r~q~~~~~~~~~~a~~~~~~~~~~~~ 517 (536) T protein:vir:10 438 DLDKLERCVTAWAALAPMRDDPDINLAMIKLRIANAIGIDTSGILLTEEQKQQKMAQQSMQMGMDNGAAALAQGMAAQAT 517 (536) T ss_pred HHHHHHHHHHHHHhhchhhhcccCCHHHHHHHHHHHcCCCchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 3333333222 1 2 24445555444 44677332 333444444443331111 000 0 0111111 Q ss_pred CCcccccccccccCCCCCC Q lcl|Aclame:pro 515 SGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 515 ~~~~~~~~~~~~~~~~~~~ 533 (535) .+.-..+..-+..|-+|.- T Consensus 518 ~~~~~~~~~~~~~g~~~~~ 536 (536) T protein:vir:10 518 ASPEAMAAAADSVGLQPGI 536 (536) T ss_pred cCchhHHhhhhccccCCCC Confidence 1111111122222222222 No 92 >protein:vir:94599 Length: 641 # NCBI annotation: PfWMP4_39 # Family: family:all:1548 # MgeID: mge:1525 # MgeName: Pf-WMP4 # Cross-refs: genbank:acc:YP_762669;genbank:gi:115304377;genbank:GeneID:5142299 Probab=98.37 E-value=9.7e-07 Score=53.54 Aligned_cols=475 Identities=12% Similarity=0.106 Sum_probs=186.9 Q ss_pred ccccCCC--CCc----------------cCHHHHHHH-------HHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhh Q lcl|Aclame:pro 28 LGPSLPN--VGY----------------QRVEFGEML-------PKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQ 82 (535) Q Consensus 28 ~~~~M~~--v~~----------------~hp~y~~~~-------~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~ 82 (535) +-.-||. |.. .+-.|..+. ++|+-+.+.|......+ .-++|+......+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~R~~~e~~W~e~~~~~~~~~~~~---~~~~~~~~~~~~~~-- 75 (641) T protein:vir:94 1 MTIEMPTPIIEDKESAKRKLSTDRIGGVVISKWQESRDKRNTVENNWDETYELYRASAIDR---QNTRARNFQTTGAD-- 75 (641) T ss_pred CccCCCcccccCCcchhhcCCchhHHHHHHHHHHHHHHhhcchHHHHHHHHHHhhcchhhh---hhcccccccccccc-- Confidence 1122221 111 111122221 24443333332221111 11233322111111 Q ss_pred HHHHHHHHhhhccchhHHHHHHHHhhhh----hcccccccc-C---HH------HHHHHhccCCCCCCHHHHHHHHHHHH Q lcl|Aclame:pro 83 RRRYETYLQRAIFYNVTARTLDGMMGQV----FSRDPIRQL-P---PA------LEAIVEDIDGEGVSLDQQAKKALGYT 148 (535) Q Consensus 83 ~~~Y~~rl~rA~~~n~~~~tv~~l~G~l----F~k~p~~~~-p---~~------l~~l~~d~d~~G~~L~~~~~~~~~~~ 148 (535) ...++. ..+.+-+..+++.++..+ |..++-+++ | +. +..++.+.-.+ +++...+...++++ T Consensus 76 ~~~~r~----ki~~~~~~~~~~~l~s~Lm~~~~p~~~wf~~~p~~~ed~~~A~~~~~~~~~~l~~-~~~~~~~~~~~~d~ 150 (641) T protein:vir:94 76 DADWRH----RINTGHTFEVVETLVAYFKGATFPSDDWFDLKGMVPELADAARVVKQLTKTKLEA-ASIRDIFETYVRNL 150 (641) T ss_pred hhcccc----cccchhHHHHHHHHhhHHhhhhcCCCceEEEecCCCChHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHH Confidence 111111 355555555555555444 333322321 1 11 22333332222 34455556899999 Q ss_pred HhhCcEEEEEeecCCC----cccch-----------HHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEe Q lcl|Aclame:pro 149 MGFGRAAIFTDYPNVG----RPVTV-----------LEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVL 213 (535) Q Consensus 149 l~~G~~~vlVD~p~~~----~~~t~-----------ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~ 213 (535) +.+|.+.+-|.+...- ...+. .+.......+.+..++|.+|. | +..++...-+.+++|++.. T Consensus 151 ~~~g~~iv~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~r~~~v~~~di~-~--dps~~~~~~~f~~~r~t~~ 227 (641) T protein:vir:94 151 VLYGVSTYRLGWDTSMERQFKRTFVETGDIFGGWEDVAVNRQRSELRIEPLSPYDVW-L--DTSGGKNTGTFVRLRHTRE 227 (641) T ss_pred hhcCceEEEeehhhHHHHhhhhhcccchhhcccccccceecccceeeEEecchhhee-e--cCCCCcccccceehhhhHH Confidence 9999888877542110 00000 000111222445555566553 1 1111111111223332221 Q ss_pred -----ecCCCcc------------------------cceeeEEEEEeecCCceEEEEEEeeeccCC--c---ccc-ccce Q lcl|Aclame:pro 214 -----AQDDGFE------------------------TTYVQQWRVLQLNAEGNYQVERWRRETQEE--M---YYS-YSKH 258 (535) Q Consensus 214 -----~~~d~f~------------------------~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~--~---~~~-~~~~ 258 (535) ..++-|+ .....+|++++. |.....++ . ... .+.. T Consensus 228 t~~~l~~eg~~~~d~v~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~e~----------~gd~~~d~~~~~~~~~~~~g~~ 297 (641) T protein:vir:94 228 ELHELVTSGYYDLDLTQVEQYVDYKFADPDTPKDVNGTDTSGWDIIEY----------YGPLLVEGVQFWCVHAVFYGKQ 297 (641) T ss_pred HHHHHHhcCCCChhhcchhhcccccccccccccccccccccccceeee----------eeeeccCCCceeeEEEEEeCCE Confidence 0000010 011112222211 11000010 0 011 1122 Q ss_pred eeeccCCCccceeEEEEeccC-CCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcce Q lcl|Aclame:pro 259 VPTDGNGNPFKEIPFQFIGPL-DNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFK 337 (535) Q Consensus 259 ~~~~~~~~~l~~IP~v~~~~~-~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~ 337 (535) ++...+...++..||+++... ..+...|.+|..++......+....-.....++.+..|...+.. +....+.. T Consensus 298 il~~~~~~~~d~~Pf~~~r~~~~~~~~YG~gp~~~~l~dqk~ln~l~r~~ld~~~~~~~p~~~~~~------~~~~~~~~ 371 (641) T protein:vir:94 298 LIRLSDSKYWCGSPFVTTTLLPDRDSVYGMSVLHPNLGALHVLNVLTNGRLDNLVLHINKMWTLVE------DGILKRED 371 (641) T ss_pred EeecccccccCcCCeEEecceecCCcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeecc------ccccccce Confidence 232333334567799977554 56678899999998888888888888877778888888765532 11123334 Q ss_pred eeecCcccccCCCCCccceeecCcch--hHHHHHHHHHHHHHH-Hhhhhh----ccccc-ccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 338 VHLGSRAIIPLPQGATAGILQITPNS--VPFEAMTHKESQMIA-MGANLL----VKSGG-NRTFGEAQQEEASEQSILSA 409 (535) Q Consensus 338 i~iG~~~~~~lp~~~~~~~~e~~~~~--l~~~~l~~~e~qm~~-lga~~l----~~~~~-~~ta~~a~~~~~~~~S~L~~ 409 (535) +..+++.++.....+..+++...... +..+.++.++..+.. .+...+ ...++ +.||++...........|.. T Consensus 372 l~~~PG~ii~~~~~~~v~pl~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~TAtEV~~~~~e~~~~l~~ 451 (641) T protein:vir:94 372 VKAKPGAVFKVAQHGSLQPIDMGRQDFVVTYQEAQVQESSVYRNTSTGPLIGNAAPRGGERVTAAEIQGVRDAGGNRLSS 451 (641) T ss_pred eeccCCcceeeCCCCcceeecCCccccchhHHHHHHHHHHHHHhhhhhhhhcccccccchhccHHHHHHHHHHHHHHHHH Confidence 77888888776655566666543322 223445555554433 222222 11222 46999888777666777888 Q ss_pred HHHHHHH-----HHHHHHHHHHHHcCC-----------------CCCCceeEEEEecccCCcc-----CCHHHHHHHHHH Q lcl|Aclame:pro 410 CTKNVSM-----AFRKALRWANQFQTG-----------------IVNDETVEYNLNTDFPAAR-----LTPNERAELILE 462 (535) Q Consensus 410 ~a~~~~~-----a~~~~lr~~a~~~g~-----------------~~~~~~~~v~~n~df~~~~-----~d~~~~~al~~l 462 (535) +..++++ .++.++.++.+..-. ...+..+ ..+-++.... ..++.++.|+.+ T Consensus 452 i~r~l~~e~l~pll~~~~~~~~~~~~~p~i~R~~~~~~~~~~~~~~~p~~L--~~~~~iv~l~~~q~~~~~~~i~~l~~~ 529 (641) T protein:vir:94 452 VHTHIEDSSTLPLLNKVFSLLQQFYVTPETIRMYVPEEQMDGFFEVSPEYL--HYPYKFLALGANYVVERERMVTDLLQL 529 (641) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhchhhhcccCCCCCccce--eeeeeEeecchhHHHHHHHHHHHHHHH Confidence 8888874 444555555443210 0111222 2222222111 123344455555 Q ss_pred HhcCC-CC-------HH-HHHHHHHhCCCCCccCC-------HHHHHHHHHhchhh-cccCCCcCCCCCCCccccccccc Q lcl|Aclame:pro 463 WQQGA-IT-------FK-EMRAGLRRAGVASEDDA-------KAETEGKATVEFIA-KTAAAGKVGDAASGGTNKAKLNN 525 (535) Q Consensus 463 ~~~G~-is-------~e-t~~~~L~r~gvl~~~~~-------~eee~~~i~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~ 525 (535) ++... .+ .. .+...++..|+-.+... .+....+.+ +... ++..+...+. ...+...++++. T Consensus 530 ~~~~a~~P~v~d~~d~~~~~~~~~~~~g~~~p~~~ir~~~~~~~~~~~~~~-~~q~~~~~~a~~~~~-~~~~~a~~~~~~ 607 (641) T protein:vir:94 530 LDISGRVPQIGQSLDYALILEDLLRQMRFTDPMRYIKKAEAPPAAPPIAPA-EPGALPPEMMNSVGG-GLNDQAIAGMTP 607 (641) T ss_pred HHHhhcChhhhhcCCHHHHHHHHHHHhCCCCchhhccCccCchhHHHHHHH-HHHHHHHHHHHHHHh-hhHHHHHHHhhH Confidence 54321 11 11 23333444443211110 000000000 0000 0000000000 000000011000 Q ss_pred --ccCCCCCCCC Q lcl|Aclame:pro 526 --GNGGGNQAGN 535 (535) Q Consensus 526 --~~~~~~~~~~ 535 (535) -.+-.+++|= T Consensus 608 ~~~~~~~~~~~~ 619 (641) T protein:vir:94 608 EDVSDLASRIGI 619 (641) T ss_pred HHHHHHHHhhcC Confidence 0001111111 No 93 >protein:vir:8883 Length: 543 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:161 # MgeName: gh-1 # Cross-refs: genbank:acc:NP_813772;genbank:gi:29366727;genbank:GeneID:1258836 Probab=98.30 E-value=1.5e-06 Score=52.48 Aligned_cols=464 Identities=12% Similarity=0.090 Sum_probs=200.2 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH----HH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD----GM 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~----~l 106 (535) |+...+.--........|+.+++--.- ...|++-..-.||..-..+.+...... .+ .|-+...+.++ +| T Consensus 1 ~~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~~-----~~-~~dst~~~a~~~Laa~l 74 (543) T protein:vir:88 1 MAETKREGLAEEGAKAVYERLKNDRVPYETRAENCAKVTIPSLFPKDSDNSSTDY-----TT-PWQAVGARGLNNLSAKV 74 (543) T ss_pred CcccccCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccCCCCCCcccccc-----cc-cccchHHHHHHHHHHHH Confidence 987665444455566666666553221 455677767777754322221111111 11 23333344444 44 Q ss_pred hhhhhccccc--cccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 107 MGQVFSRDPI--RQLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 107 ~G~lF~k~p~--~~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) .+.+|--.|= +.+++ .++.+++.|.. ..++++.-+..++.+...+|.+.+++|-+... T Consensus 75 ~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~ly~~~~~~~ 154 (543) T protein:vir:88 75 MLALFPLQSWMKLKVSEWQAKQLVSDPSQLAVVEQGLGMVERILMSYMEANSYRVTLFELIRQLALAGTALIYLPPPDAS 154 (543) T ss_pred HHhhcCCCcccccccChHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeccCccc Confidence 4444411111 12221 12333322221 23568888888999999999999999855422 Q ss_pred cccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCccc-----------ceeeEEEEEe Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFET-----------TYVQQWRVLQ 231 (535) Q Consensus 165 ~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~-----------~~~~~~rvl~ 231 (535) .. +.+| +..|+-.+ +-... ++...+..|+.++.+... ...|.. +.++-|...+ T Consensus 155 ~~---------~~~~-~~~~pl~~---y~v~~-d~~G~v~~i~r~~~~~~~~l~~~~~~~v~~~~~~~p~~~~~v~~~V~ 220 (543) T protein:vir:88 155 SN---------SYNP-MKLYTLHN---HVVQR-DAFGNVLQIVTLDKVAYAALPEDVRNSLSGGQEYKPEQELEVYTHIY 220 (543) T ss_pred cc---------eecc-eEEeEcce---EEEee-CCCCCeeeeeeeeeccHHHHhHHhhHHHHHHhhcCCccceEEEEEEE Confidence 11 1112 22233222 12222 222344445555544221 112211 1122222222 Q ss_pred ecCCc-eEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccC-CCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 232 LNAEG-NYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPL-DNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 232 l~~~g-~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~-~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) +..++ .| .|..+ ..+.++..+.+..+++..||++.... ..+...|.+|..+...-...+...+-..-. T Consensus 221 pr~~~~~~---~~~~~-------~~~~~v~~~~~~~~~~e~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~ 290 (543) T protein:vir:88 221 IDDESGDF---LSYQE-------IEGVEVDGSDGQYPQDALPWIAVRWTKRDGEHYGRSHVEEYLGDLNSLESLNEAMIK 290 (543) T ss_pred eecCCCcc---ccccc-------ccCeeeecCCCccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 21111 11 11111 11223333445555566677655332 445566777876655555555555555666 Q ss_pred HHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHH-Hhhhh Q lcl|Aclame:pro 310 MAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIA-MGANL 383 (535) Q Consensus 310 ~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~-lga~~ 383 (535) .++.+..|.+.+. |.. ....+.-|....+.-...++.+.+++. +..+ ..+.+++++++|.. .-..+ T Consensus 291 ~~~~~~~pp~~v~~~g~~--------~~~~~~~~~~g~~v~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~~ 362 (543) T protein:vir:88 291 FAMISSKVVGLVNPNGIT--------QVRRLVKAQTGDFVAGRKADIEFLQLEKTADFTVAKSVADAIEARLSYVFMLNS 362 (543) T ss_pred HHHHHhcCceeecccccc--------chhhcccCCCceeecCCCCcceeeecccccchhHHHHHHHHHHHHHHHHHhhhh Confidence 6677777775543 211 122233333322321223445555543 2233 35678888888754 22222 Q ss_pred h-cccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCC--CCCceeEEEEecccCCccCCHHH Q lcl|Aclame:pro 384 L-VKSGGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQTGI--VNDETVEYNLNTDFPAARLTPNE 455 (535) Q Consensus 384 l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~g~~--~~~~~~~v~~n~df~~~~~d~~~ 455 (535) + ..+....||++...+..-....|.-+-.++.+ .+++++.++-+ .|.. ...+.+++++-. ....-.-.+. T Consensus 363 ~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r-~g~lP~~p~~~v~~~~vs-~l~~l~r~~~ 440 (543) T protein:vir:88 363 AVQRSGERVTAEEIRYVASELEDTLGGVYSILSQELQLPIVRVLLNQLQA-TQQIPNLPQEAVEPTVTT-GAEALGRGQD 440 (543) T ss_pred hccCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCchhceeeeEEe-cHHHHHHHHH Confidence 3 34556689999887766555555555555443 33455555544 2221 122233333221 0001001222 Q ss_pred HHHHH---HHHh-------cCCCCHHHHHHHH-HhCCCCC-ccCCHHHHHHHHHhchhh------cc--cCCCcCCCCCC Q lcl|Aclame:pro 456 RAELI---LEWQ-------QGAITFKEMRAGL-RRAGVAS-EDDAKAETEGKATVEFIA------KT--AAAGKVGDAAS 515 (535) Q Consensus 456 ~~al~---~l~~-------~G~is~et~~~~L-~r~gvl~-~~~~~eee~~~i~~e~~~------~~--~~~~~~~~~~~ 515 (535) ++.+. ..+. ...|..+.+.+.+ ...||-+ .-...+++...++++... +. ..++...+... T Consensus 441 ~~~l~~~~~~v~~~~~p~vld~id~d~~~~~~a~~~Gv~~~~i~r~~~e~~~~~~q~~~q~~~~~~~~~~~~~~~~~~~~ 520 (543) T protein:vir:88 441 LDKLTQFLNAVATVSQLNGDPDLNVNNIKLRLANAIGIDTAGLLLTEAEKAQAQSQEMLKQGGLNAAAGIGSGVAAQATA 520 (543) T ss_pred HHHHHHHHHHHHhccchhhhccCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcc Confidence 22222 2221 1123333344433 4467622 233445555545433211 11 11122223323 Q ss_pred CcccccccccccCCCC-CCCC Q lcl|Aclame:pro 516 GGTNKAKLNNGNGGGN-QAGN 535 (535) Q Consensus 516 ~~~~~~~~~~~~~~~~-~~~~ 535 (535) +....+..-+..|+.| ++|- T Consensus 521 ~~~~~~~~~~~~~~~~~p~~~ 541 (543) T protein:vir:88 521 SPEAMESAMDTAGVQPGPIAT 541 (543) T ss_pred ChHHHHHHhhhcCCCCCCCCC Confidence 3333233322223322 2333 No 94 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=98.29 E-value=1.6e-06 Score=52.33 Aligned_cols=457 Identities=12% Similarity=0.121 Sum_probs=190.0 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH----HH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD----GM 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~----~l 106 (535) |++....--.=......|+.+++--.= ...|++-..-.||..-..+.+....... + .|-+...+.++ +| T Consensus 1 m~~~~~~~~~~~~~k~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~-----~-~~dst~~~a~~~Laa~l 74 (535) T protein:vir:15 1 MADSKRTGLGEDGAKATYDRLTNDRRAYETRAENCAQYTIPSLFPKESDNESTDYT-----T-PWQAVGARGLNNLASKL 74 (535) T ss_pred CCccchhccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccCCCCCccccccc-----c-cccccHHHHHHHHHHHH Confidence 886443211112233445544442111 4556666666677542222221111111 1 23333334444 44 Q ss_pred hhhhhcccccc--ccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 107 MGQVFSRDPIR--QLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 107 ~G~lF~k~p~~--~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) .+.+|--.|=+ ++.+ .++.+++.|.. ..++++.-+..++.+.+.+|.+-++|+-+..+ T Consensus 75 ~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~ 154 (535) T protein:vir:15 75 MLALFPMQSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVERIIMNYIESNSYRVTLFECLKQLIVAGNALLYLPEPEGS 154 (535) T ss_pred HHhhcCCCcccccccChHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeEEeecCCCC Confidence 44444211111 2221 23333333321 24568888889999999999999999754322 Q ss_pred cccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCcc------------cceeeEEEEE Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFE------------TTYVQQWRVL 230 (535) Q Consensus 165 ~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~------------~~~~~~~rvl 230 (535) . ..+..|+-.+ +-.... +...+.-|..++.+.-+. .+|. ...++.|.+. T Consensus 155 ~-------------~~f~~~pl~~---~~v~~d-~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v 217 (535) T protein:vir:15 155 Y-------------NPMKLYRLSS---YVVQRD-AYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHV 217 (535) T ss_pred c-------------eeeEEEEcCe---eEEeeC-CCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEE Confidence 1 2344455443 333332 333444455555443111 1221 1223334333 Q ss_pred eecCC-ceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 231 QLNAE-GNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLLDLCEVNIGHYRNSADYE 308 (535) Q Consensus 231 ~l~~~-g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~ 308 (535) .+..+ +.|.+.. +..+. .+....++.+++.-||++... ...+...|.+|..+...-...+...+-..- T Consensus 218 ~~~~~~~~~~~~~---e~~g~-------~~~~~~~~~~~~~~P~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l 287 (535) T protein:vir:15 218 YLDEESGDYLKYE---EVEDV-------EIDGSDATYPTDAMPYIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIV 287 (535) T ss_pred EEecCCCcEEEEE---EeeCc-------cccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHH Confidence 44332 2332211 11111 111112333444455554332 234455677777665555555555666666 Q ss_pred HHHHHhcCceeEee--CCCCccchhccCcceee-ecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHHH--h Q lcl|Aclame:pro 309 EMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVH-LGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIAM--G 380 (535) Q Consensus 309 ~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~-iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~l--g 380 (535) ..++.+..|...+. |.. .+..+. .|.+.++. ....+.+.+++. +..+ ..+.++++++++... . T Consensus 288 ~~~~~~~~p~~lv~~~g~~--------~~~~l~~~~~g~~v~-g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~ 358 (535) T protein:vir:15 288 KMSMISAKVIGLVNPAGIT--------QPRRLTKAQTGDFVP-GRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFML 358 (535) T ss_pred HHHHHHhcCceeecccccc--------cchhcccCCceeeec-CCcccceeeecccccchhHHHHHHHHHHHHHHHHHhh Confidence 66777777775543 211 111232 23333332 222344455543 2233 356788888887552 2 Q ss_pred hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCC--CCCceeEEEEecccCCccCCH Q lcl|Aclame:pro 381 ANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQTGI--VNDETVEYNLNTDFPAARLTP 453 (535) Q Consensus 381 a~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~g~~--~~~~~~~v~~n~df~~~~~d~ 453 (535) -.+...+....||++...+..-....|.-+-.++.+ .+++++.++-+ .|.. .+.+.++++|-.-..... -. T Consensus 359 ~~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~Pli~r~~~il~r-~g~lP~~p~~~v~~~yis~La~aq-r~ 436 (535) T protein:vir:15 359 NSAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPLVRVLLKQLQA-TSQIPELPKEAVEPTISTGLEAIG-RG 436 (535) T ss_pred hhcccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCccceeEEEecHHHHHH-HH Confidence 222334556689999887766555555555555432 33445554433 2211 222333333321111000 11 Q ss_pred HHHHHHHHHHh---------cC-CCCHHHHHHHH-HhCCCCCc-cCCHHHHHHHHHhchhhcccC---C-----CcCCCC Q lcl|Aclame:pro 454 NERAELILEWQ---------QG-AITFKEMRAGL-RRAGVASE-DDAKAETEGKATVEFIAKTAA---A-----GKVGDA 513 (535) Q Consensus 454 ~~~~al~~l~~---------~G-~is~et~~~~L-~r~gvl~~-~~~~eee~~~i~~e~~~~~~~---~-----~~~~~~ 513 (535) ++++.++...+ .. .|....+.+.+ ...||-.. -...+|+...+.++...+... + .....+ T Consensus 437 ~~~~~l~~~~~~la~~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~~~~eev~~~~~q~~~~~~~~~~a~~~g~~~~~~~ 516 (535) T protein:vir:15 437 QDLDKLERCISAWAALAPMQGDPDINLAVIKLRIANAIGIDTSGILLTDEQKQALMMQDAAQTGIENAAATGGAGVGALA 516 (535) T ss_pred HHHHHHHHHHHHHHhcChhhhhccCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh Confidence 22333322221 11 24444444443 44665322 233344433333221111100 0 000111 Q ss_pred CCCcccccccccccCCCCC Q lcl|Aclame:pro 514 ASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 514 ~~~~~~~~~~~~~~~~~~~ 532 (535) .......+-.-|..|..-+ T Consensus 517 ~~~p~~~~~~~~~~g~~~~ 535 (535) T protein:vir:15 517 TSSPEAMQGAAAQAGLDAT 535 (535) T ss_pred ccChHHHHHHHhccCCCCC Confidence 1111111122222222222 No 95 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=98.10 E-value=4.6e-06 Score=49.87 Aligned_cols=452 Identities=12% Similarity=0.057 Sum_probs=185.7 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |+|-+. +..+-.+++- |.. + .. ..+ .....-.|.|...-+. ...+..+++..+.+. T Consensus 1 ~~r~~~--~~~~~dr~i~-~~~----------~-------~~--~~~-~~~~~~~y~aa~~~r~-~~~w~~~~~~~s~~~ 56 (505) T protein:vir:96 1 MKRAEK--KPSLAQRMVN-WAW----------Y-------RY--VEP-QKNAARAFEAARRDRL-GKAWLRRASRLSADE 56 (505) T ss_pred CCCCcc--ccchhhcccc-hhh----------h-------hh--HHH-HHHhhhhcccccCCCc-cccccCCCCCCChHH Confidence 654332 2222222211 110 0 00 011 1111122333222111 122322322222222 Q ss_pred hhHHHHHHHHhhh--c--cchhHHHHHHHHhhhhhc-ccccc-------------ccCHHHHHHH----h--ccCCCC-C Q lcl|Aclame:pro 81 EQRRRYETYLQRA--I--FYNVTARTLDGMMGQVFS-RDPIR-------------QLPPALEAIV----E--DIDGEG-V 135 (535) Q Consensus 81 E~~~~Y~~rl~rA--~--~~n~~~~tv~~l~G~lF~-k~p~~-------------~~p~~l~~l~----~--d~d~~G-~ 135 (535) +....-+.-..|| . =.++.+..|+.++..+-. ...++ ++-..++.+| + +||-.| . T Consensus 57 ~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~ 136 (505) T protein:vir:96 57 EIYADLASLVQRAREQSINNPYAKRFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRY 136 (505) T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccC Confidence 2111111111121 1 134555555544444432 11111 1223344433 2 577777 5 Q ss_pred CHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeee-cCCccceeEEEEEEEEe Q lcl|Aclame:pro 136 SLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKL-VGGKSVISLVVIQENVL 213 (535) Q Consensus 136 ~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~-~~g~~~Lt~v~l~E~~~ 213 (535) +++++.+.+++..+..|-|++..-+.. + +..| -+.+++|+.|-+..... .+|. .|+.=+ T Consensus 137 ~f~~lq~l~~r~~~~dGE~f~~~~~~~-~-----------~~~~~~lqliepd~l~~~~n~~~~~~~------~i~~GI- 197 (505) T protein:vir:96 137 HFVTLLHLWMETLARDGEVLVREHRGY-P-----------NKWGYALQILECDRLDLNYNADLQNGN------RIRMSI- 197 (505) T ss_pred CHHHHHHHHHHHHhhCCceEEEEeecC-C-----------CCcceEEEEechhhcCCCCCcccCCcC------eEEece- Confidence 799999999999999999988764322 1 1235 36789998885543211 1110 111111 Q ss_pred ecCCCcccceeeEEEEEeecCCce---EEEEEEeeeccCCccccccceeeeccCCCccceeEE---E-EeccCCCcCCCC Q lcl|Aclame:pro 214 AQDDGFETTYVQQWRVLQLNAEGN---YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPF---Q-FIGPLDNNADID 286 (535) Q Consensus 214 ~~~d~f~~~~~~~~rvl~l~~~g~---y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~---v-~~~~~~~~~~~~ 286 (535) +.+.+|. |. +++.. ++...... ......+.+||- + .+...+.+-.-| T Consensus 198 -----------------e~d~~Gr~~aY~--i~~~h-Pgd~~~~~------~~~~~~~~rvpa~~vlH~f~~~r~gQ~RG 251 (505) T protein:vir:96 198 -----------------ELDAWERPVAYH--LLVNH-PGDNSYCY------HYAGQTYERVPADEIIHTFVPWRPHQNRG 251 (505) T ss_pred -----------------EECCCCceEEEE--EeecC-CCcccccc------ccccccccccCHhHhhhhhcccCCccccC Confidence 1222221 21 11111 11111000 011234556773 2 345566677778 Q ss_pred cchHHHHHHHHHHHHhhH-HHHHHHHHHhcCceeEeeCCCC---ccchhccCcceeeecCcccccCCCCCccceeecCcc Q lcl|Aclame:pro 287 HPPLLDLCEVNIGHYRNS-ADYEEMAFVAGQPTAFFTGLTK---DWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPN 362 (535) Q Consensus 287 ~ppL~dLA~ln~~hy~~~-sdl~~~l~~~~~P~~~~~G~~~---~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~ 362 (535) .|.|..+...-..+-... +.+.. .-+.+.-..+++.-.+ +...+......+.++++++..|++|-+++++++... T Consensus 252 is~lapvl~~l~~l~~y~dael~~-a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~~~~p 330 (505) T protein:vir:96 252 IPWTHASMVELHHIGEYRKSEMIA-AELGAKKVGFYEQDPEAYDQPPEDDQGEIVEEVEAGTYQLLPYGIRFKEHKIDHP 330 (505) T ss_pred cchHHHHHHHHHHHhHHHHHHHHH-HHHhhhheeeeecCCccCCCccccccCccccccCCceeeecCCCCeeeeeCCCCC Confidence 888876533222222221 22222 2334444455553211 111222234457788999999999999999988754 Q ss_pred hhHH-HHHHHHHHHHHH-H--hhhhhccccc--ccchH-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCC Q lcl|Aclame:pro 363 SVPF-EAMTHKESQMIA-M--GANLLVKSGG--NRTFG-EAQQEEASEQSILSA--CTKNVSMAFRKALRWANQFQTGIV 433 (535) Q Consensus 363 ~l~~-~~l~~~e~qm~~-l--ga~~l~~~~~--~~ta~-~a~~~~~~~~S~L~~--~a~~~~~a~~~~lr~~a~~~g~~~ 433 (535) +... ..++.+..+|++ + ....+..+.. |=++. ++.++.......++. +..-|.-.++..|+.+ ...|... T Consensus 331 ~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a-~l~G~i~ 409 (505) T protein:vir:96 331 HTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLISMS-LLTQALP 409 (505) T ss_pred CCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcC Confidence 4333 444444444433 2 2333444432 22222 223333322222222 1223344455555432 2234321 Q ss_pred -CCceeEEEEecccCCcc---CCH-HHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCC Q lcl|Aclame:pro 434 -NDETVEYNLNTDFPAAR---LTP-NERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAG 508 (535) Q Consensus 434 -~~~~~~v~~n~df~~~~---~d~-~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~ 508 (535) .+....-..+-+|.... +|+ .++++...++++|..|++.... .+| . +++++.+.+..|..-....+- T Consensus 410 ~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a---~~G-~----D~~~v~~q~a~e~~~~~~~Gl 481 (505) T protein:vir:96 410 LNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIR---AAG-D----DPEDVFDEIAWEEQLMRDKGV 481 (505) T ss_pred CCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHH---HcC-C----CHHHHHHHHHHHHHHHHHcCC Confidence 11111111122333332 344 4899999999999999996654 445 3 345544444433221111111 Q ss_pred cCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 509 KVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ...++.......++... ..+++| T Consensus 482 ~~~~~~~~~~~~~~~~~----~~~~~d 504 (505) T protein:vir:96 482 NPTPPEQESKDATTDEE----DDSASD 504 (505) T ss_pred CCCCCCCCCCCCCCCCC----CCCCCC Confidence 11111111111111100 111111 No 96 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=98.07 E-value=5.3e-06 Score=49.49 Aligned_cols=407 Identities=10% Similarity=0.011 Sum_probs=175.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) |--.+ -......|...-+. ...|-|..+.. .+. .+.|..|.. ...++.+|+..+.-++ T Consensus 1 ~~~~D--------------~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~--~~l~a~Y~~----~~l~~~~vd~~a~d~~ 58 (437) T protein:vir:52 1 MKFFD--------------GIKSLALKLGSKQE-QTYYSPSLSLT-DDL--VQLEALWRD----NWIANKVCIKRPEDMV 58 (437) T ss_pred Cchhh--------------hhHhHHhcCCCccc-cceeecCcccc-ccH--HHHHHHHHh----CchhhHHhhcchHHhh Confidence 11000 01111222111111 12222222111 110 122223322 4567888888888889 Q ss_pred cccccccc---CH----HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCc--ccchHHHHhccCCcEEE Q lcl|Aclame:pro 112 SRDPIRQL---PP----ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGR--PVTVLEQKLGLYRPTIT 182 (535) Q Consensus 112 ~k~p~~~~---p~----~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~--~~t~ad~~~~~~rPy~~ 182 (535) |++..++- ++ .++..++.. .+.+-++.+.+.+-.+|.++|++.....+. +... .+.--++. T Consensus 59 r~~~~i~~~d~~~~~~~~~~~~~~~l-----~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~-----~~~~~~~~ 128 (437) T protein:vir:52 59 RNWREIYSNDLNSKQLDLFTKFERSL-----KLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKP-----TERLKRLI 128 (437) T ss_pred cCCceEecCCCCHHHHHHHHHHHHhh-----cHHHHHHHHHHhcccccceEEEEEecCCCccccccc-----CCceeEEE Confidence 99888743 22 344555543 567777888888878999999997543211 1100 01111233 Q ss_pred EechhhhhcceeeecCCccceeEEEEEEEEeec-CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeee Q lcl|Aclame:pro 183 LVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ-DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPT 261 (535) Q Consensus 183 ~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~ 261 (535) .+++.+|- ++ .. ...++ ...|+.-. .|+..+.... . . T Consensus 129 v~~~~~v~------------~~--~~--~~~dp~s~~fg~p~------------------~y~v~~~~~~------~-~- 166 (437) T protein:vir:52 129 ILPKWKIS------------PT--GT--KDDDVLSPNFGRYS------------------EYSILGGSQS------I-T- 166 (437) T ss_pred Eechhhcc------------cc--cc--ccccccccccCcce------------------EEEEecCCcc------e-e- Confidence 33332220 00 00 00011 11232221 1221111100 0 0 Q ss_pred ccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhcc-----Cc Q lcl|Aclame:pro 262 DGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVF-----KD 335 (535) Q Consensus 262 ~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~-----~~ 335 (535) -|+=..|.|.-. .........|.|.|.-+-+--...-+...--..+++...++..-+.|+...-..+.. .. T Consensus 167 ---iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~l~~~~~~~~~~~~ 243 (437) T protein:vir:52 167 ---VHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKIDIFKIAGLSDKIAAGMENEVASVI 243 (437) T ss_pred ---EccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecchHHHHhcCCcHHHHHHHH Confidence 123333433210 112223445777776554433333334334445677777787777765321110000 00 Q ss_pred ceee--ecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHHH--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 336 FKVH--LGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGEA--QQEEASEQSILSACT 411 (535) Q Consensus 336 ~~i~--iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a--~~~~~~~~S~L~~~a 411 (535) +.+. -+...++.++.+.++..+..+-+++. +.++...++|+....-.+..=.+..+++-+ ..+...=+..+.++. T Consensus 244 ~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl~-~~l~~~~~~iaaa~~iP~t~L~G~s~~Glasge~D~~~yyd~i~~~Q 322 (437) T protein:vir:52 244 SAVQEIKSATNSLLLDAENEYDRKELTFTGLK-DLLTEFRNAVAGAADMPVTILFGQSVSGLASGDEDIQNYHEAIRRLQ 322 (437) T ss_pred HHHHHhcCCCceEEEcCCcceEEEecCcCCHH-HHHHHHHHHHHHHhcCchhhhcCcCcccccccHHHHHHHHHHHHHHH Confidence 0011 13345556676667766666655554 455556666654332222111122222211 223333355566666 Q ss_pred H-HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHH-------HHHHHHHHhcCCCCHHHHHHHHHhCCCC Q lcl|Aclame:pro 412 K-NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNE-------RAELILEWQQGAITFKEMRAGLRRAGVA 483 (535) Q Consensus 412 ~-~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~-------~~al~~l~~~G~is~et~~~~L~r~gvl 483 (535) . .+...++++++++.+=.....+ .+++|. +.......+.+. +++...++++|.|+-+..+++|+..|+. T Consensus 323 e~~l~p~le~l~~~i~~~~~g~~~-~~~~~~--f~pL~~~s~kekae~~~~~a~a~~~~~~~g~i~~~e~r~~L~~~g~~ 399 (437) T protein:vir:52 323 ETRLRPIFEIIDPLICNELFGGLP-ADWWFE--FVPLTTVKQEQQINMLNTFATAANTLIQNGVLNEYQIANELRESGLF 399 (437) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC-CcceEE--eCCcCCcCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCC Confidence 4 4778888888877654333232 234444 333333332222 3456678899999999999999998876 Q ss_pred CccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 484 SEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 484 ~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.. +.+++... .+.... +++...+. ...+..++.++ T Consensus 400 ~~i-~~~~~~~~-----~~~~~~---------~~~~~~~~-~~~~~~~~~~~ 435 (437) T protein:vir:52 400 ANI-SAEHIEEL-----KNADEF---------AGNFEEPE-KMEGAQVQNSE 435 (437) T ss_pred CCC-Cccccccc-----cCCCCC---------CCccCCCC-CCCCCCCCCCC Confidence 432 22211110 000000 00000111 01111222222 No 97 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=98.04 E-value=6.2e-06 Score=49.14 Aligned_cols=403 Identities=11% Similarity=0.027 Sum_probs=171.3 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM 107 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~ 107 (535) .|.||.-=..+-. ..+. +.+.+.+.........-|.+. ... ...+..|.. ....+.+|+..+ T Consensus 1 ~~~~m~~~~~~~~----~~D~---~~~~~~~~~g~~~~~~~~~~~-----~~~--~~l~~~Y~~----~~l~~~~Vd~~a 62 (435) T protein:vir:79 1 MGVFMSDKVKAIT----KEDG---YNEIFGSKDGTFRPNAFYMQR-----AAF--KALSQFYEE----DGMARRIVDVIP 62 (435) T ss_pred CCcccccccccch----hhcc---hhhhhcccccccccCcccCCc-----CCH--HHHHHHHhc----Cchhhhhhccch Confidence 6666662110000 0001 111122211111000001111 110 112233333 356678888888 Q ss_pred hhhhccccccccC---HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC---cccchHHHHhccCCcEE Q lcl|Aclame:pro 108 GQVFSRDPIRQLP---PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG---RPVTVLEQKLGLYRPTI 181 (535) Q Consensus 108 G~lF~k~p~~~~p---~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~---~~~t~ad~~~~~~rPy~ 181 (535) .-++|+...++-. +.++..++. ..+.+-++.+.+.+..+|.++|+|...... .+... .+...++ T Consensus 63 ed~~r~g~~i~g~~~~~~~~~~~~~-----l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~-----~g~i~~i 132 (435) T protein:vir:79 63 EEMVTPGFKVDGVKNEKSFKSRWDE-----LRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKP-----GAQLEDI 132 (435) T ss_pred HHhhcCCceecCCChHHHHHHHHHH-----hhHHHHHHHHHHhhhccccEEEEEEecCCCCccccccc-----CCceeeE Confidence 8888988877533 345555554 367888999999999999999999753221 12211 1344567 Q ss_pred EEechhhhhcceeeecCCccceeEEEEEEEEeec-CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceee Q lcl|Aclame:pro 182 TLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ-DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVP 260 (535) Q Consensus 182 ~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~ 260 (535) ..+++.+|..- +...++ ...|+.-.. |+| ...+.... .. T Consensus 133 ~v~d~~~i~~~-----------------~~~~dp~sp~fg~P~~--y~v----------------~~~~~~~~----~~- 172 (435) T protein:vir:79 133 RVYDRYQITIH-----------------ERETNARSVRYGEPKL--YKI----------------SPGGDIPE----FF- 172 (435) T ss_pred Eeechhhccch-----------------hhccCCcccccCcceE--EEE----------------ecCCCCCc----eE- Confidence 77777555210 111121 123433221 221 11110000 00 Q ss_pred eccCCCccceeEEE----EeccCCCcCCCCcchHHHHHHHHHHHHhhHH-HHHHHHHHhcCceeEeeCCCCccchhccCc Q lcl|Aclame:pro 261 TDGNGNPFKEIPFQ----FIGPLDNNADIDHPPLLDLCEVNIGHYRNSA-DYEEMAFVAGQPTAFFTGLTKDWVEDVFKD 335 (535) Q Consensus 261 ~~~~~~~l~~IP~v----~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~s-dl~~~l~~~~~P~~~~~G~~~~~~~d~~~~ 335 (535) -|+-..|.|. +..........+.+||...+.=.+..|...+ --.++++-..+...-+.|+...-..+.... T Consensus 173 ----iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~ 248 (435) T protein:vir:79 173 ----VHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQAVWKARDLALMCDDEEGRY 248 (435) T ss_pred ----EcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHhhcCccchH Confidence 0121222221 0011122345577777654443344444443 334566777777777766532111000000 Q ss_pred ---cee-----eecCccccc-CCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHH--H-HHHHHHH Q lcl|Aclame:pro 336 ---FKV-----HLGSRAIIP-LPQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGE--A-QQEEASE 403 (535) Q Consensus 336 ---~~i-----~iG~~~~~~-lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~--a-~~~~~~~ 403 (535) ..+ .-+.+..+. ..++.++..+...-+++ .+.++...++|.....-.+..=.+..+++- + ..+...= T Consensus 249 ~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsgl-~~~~~~~~~~iaaa~~IP~t~L~G~s~~glnstgd~d~~~y 327 (435) T protein:vir:79 249 AARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSGV-PEFLQEKIDRIVALTGIHEIIIKNKNTGGVSASQNTALETF 327 (435) T ss_pred HHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCCH-HHHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHH Confidence 000 122233333 34445566665554554 345555566665443322221122222221 1 1122222 Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHH-------HHHHHHHHHhcCCCCHHHHHH Q lcl|Aclame:pro 404 QSILSACTK-NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPN-------ERAELILEWQQGAITFKEMRA 475 (535) Q Consensus 404 ~S~L~~~a~-~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~-------~~~al~~l~~~G~is~et~~~ 475 (535) +..+.++.. .+...++++++++.+ . .+. ++.++......+.+ .+++...++++|.|+.++.++ T Consensus 328 yd~i~~~Qe~~l~p~l~~l~~li~~------s-~d~--~~~f~pL~~~sekEkAei~~~~a~a~~~~~~~g~i~~~e~r~ 398 (435) T protein:vir:79 328 YKLIDRKRVEDYKPILEFLLPFMIS------E-TEW--SIEFEPLSVPSDKDKAEIMAKNVESVVKLKAEQAINLKETRD 398 (435) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc------C-CCC--eEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHH Confidence 444555543 366677777776642 1 223 33344444433322 245566788999999999998 Q ss_pred HHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccc Q lcl|Aclame:pro 476 GLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTN 519 (535) Q Consensus 476 ~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~ 519 (535) .|+....- .-..+++..+++ +..+.++ .....+|+|. T Consensus 399 ~L~~~~~~--~~~~~~~~~~~~-~~~d~~~----~~~~e~g~~~ 435 (435) T protein:vir:79 399 TLRSICPD--LKIMDNDNIELP-EPEDLDP----EPGQEGGLNK 435 (435) T ss_pred HHHHhccc--cCCCCcccccCC-ccccCCC----CCCCCCCCCC Confidence 88652211 001111111111 1111111 0111112222 No 98 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=97.97 E-value=8.5e-06 Score=48.38 Aligned_cols=447 Identities=9% Similarity=0.016 Sum_probs=185.7 Q ss_pred CC--C--CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhc----cchhHHHHH Q lcl|Aclame:pro 32 LP--N--VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAI----FYNVTARTL 103 (535) Q Consensus 32 M~--~--v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~----~~n~~~~tv 103 (535) |- | |....|...............|.|...-+ .....|. + .+.+.+....-.....||- =.++.+..| T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r--~~~~~~~-~-~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av 76 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGR--THKAKRQ-P-LGADTSLQKSAVSMREQCRKLDEDHDLVTGLL 76 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccc--cccccCC-C-CChHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 43 2 33455666666666666666676654322 1222232 1 1222221111111122221 134445555 Q ss_pred H----HHhhhhh-ccccc-cc--------cCHHH----HHHHhccCCCCC-CHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 104 D----GMMGQVF-SRDPI-RQ--------LPPAL----EAIVEDIDGEGV-SLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 104 ~----~l~G~lF-~k~p~-~~--------~p~~l----~~l~~d~d~~G~-~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) + ..+|--+ .-.|+ +. +-..+ +.|.++||-.|. +++++.+.+.+..+..|-|++..-+...+ T Consensus 77 ~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~ 156 (548) T protein:vir:95 77 DRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVP 156 (548) T ss_pred HHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccc Confidence 4 4555211 10111 11 11222 346688888874 79999999999999999999877543322 Q ss_pred cccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCce---EEE Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGN---YQV 240 (535) Q Consensus 165 ~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~---y~v 240 (535) ... ....-| -|.++.|+.|=+= ....++ .|+.=+ +.+.+|. |+ T Consensus 157 ~~~------~g~~~~~~lqliepd~l~~~-~~~~~~-------~i~~GI------------------E~D~~Grp~aY~- 203 (548) T protein:vir:95 157 NYT------FATSVPFALELLEPDYLPFS-YNNLSK-------GIVQGI------------------ERDTWRRKRAYH- 203 (548) T ss_pred ccc------CCcccceEEEEechhhcCCC-CCCCCC-------ceeeee------------------EECCCCceEEEE- Confidence 100 011124 4678888887220 000111 111111 1222332 22 Q ss_pred EEEeeeccCCccccccceeeeccCCCccceeEE---E-EeccCCCcCCCCcchHHHHHHHHHHHHhh-HHHHHHHHHHhc Q lcl|Aclame:pro 241 ERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPF---Q-FIGPLDNNADIDHPPLLDLCEVNIGHYRN-SADYEEMAFVAG 315 (535) Q Consensus 241 ~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~---v-~~~~~~~~~~~~~ppL~dLA~ln~~hy~~-~sdl~~~l~~~~ 315 (535) +++.. .+..... .+...+.+||- + ++...+.+-.-|.|.|..+...-..+-.. .+.+..+ -+.+ T Consensus 204 -i~~~h-Pgd~~~~--------~~~~~~~rvpA~~VlHif~~~r~gQ~RGvs~lapvl~~l~~l~~y~dael~~a-ki~A 272 (548) T protein:vir:95 204 -LLKDH-PGNLQTL--------GGSLAVKRVEAERIIHIAYRKRIGQNRGVPMLHAVLIRLADLKDYEESERVAA-RISA 272 (548) T ss_pred -EeecC-CCccccc--------ccccceeeechhHheecccccCCccccCcchHHHHHHHHHHHhHHHHHHHHHH-HHhh Confidence 11111 1111000 01112333443 2 23455666677788776643221111111 1223333 3333 Q ss_pred CceeEeeC-CCCccc---hhccCcceeeecCcccc-cCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhcc Q lcl|Aclame:pro 316 QPTAFFTG-LTKDWV---EDVFKDFKVHLGSRAII-PLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVK 386 (535) Q Consensus 316 ~P~~~~~G-~~~~~~---~d~~~~~~i~iG~~~~~-~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~ 386 (535) .-..+++. ..+... .+......+.+++++++ .|++|-+++|++++-.+-.. ..+..+...|++ +....+.. T Consensus 273 ~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~pG~iv~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltg 352 (548) T protein:vir:95 273 ALAMYIKKGNPDSYTVEPGKDRKNRTIPIAPGMVFDDLEPGEDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSR 352 (548) T ss_pred hheeeeecCCCccccCCCCcccccccccccCCccccccCCCceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhc Confidence 33444442 221111 11222345778888877 58999999999887443333 344444444432 22334444 Q ss_pred ccc-ccchH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCCCCCc--eeEEEEecccCCcc---CCH-HHH Q lcl|Aclame:pro 387 SGG-NRTFG-EAQQEEASEQSILSAC--TKNVSMAFRKALRWANQFQTGIVNDE--TVEYNLNTDFPAAR---LTP-NER 456 (535) Q Consensus 387 ~~~-~~ta~-~a~~~~~~~~S~L~~~--a~~~~~a~~~~lr~~a~~~g~~~~~~--~~~v~~n~df~~~~---~d~-~~~ 456 (535) +.. +=++. .+.++.......++.. ..-|.-.++..|+.+. ..|...-+. ...-.++-+|.... +|+ .++ T Consensus 353 D~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~a~-l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea 431 (548) T protein:vir:95 353 AYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQMYL-LARKERLPADVDHRTLYAAVYQGPVMPWINPMHEA 431 (548) T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcCCCCCCCchhheeeeeecCCccccChHHHH Confidence 431 21111 1122222222222211 1122223333333221 123211111 01112223333222 344 489 Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhh-----cc---cCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 457 AELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIA-----KT---AAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 457 ~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) ++...++.+|..|++... .++| .+ ++++.+.+..|..- .+ .+...+...+.......+--.+.| T Consensus 432 ~A~~~~i~~Gl~T~~~~~---a~~G-~D----~~ev~~q~a~E~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (548) T protein:vir:95 432 NAWELLVKAGFADEAEVA---RARG-RD----PRELKKSRETEIKANRAAGLVFSSDAYHQLVKSGMDPVEAVQKVYLGV 503 (548) T ss_pred HHHHHHHHcCCCCHHHHH---HHhC-CC----HHHHHHHHHHHHHHHHHcCCCCCCcccccccccccCCCCchhhhcccc Confidence 999999999999999654 4445 33 44444444333211 10 011111111111111111122233 Q ss_pred CCCCCCC Q lcl|Aclame:pro 529 GGNQAGN 535 (535) Q Consensus 529 ~~~~~~~ 535 (535) +.|-.|- T Consensus 504 ~~~~~~~ 510 (548) T protein:vir:95 504 GKMLTAD 510 (548) T ss_pred ccccccc Confidence 3444443 No 99 >protein:vir:7017 Length: 515 # NCBI annotation: head portal protein # Family: family:all:481 # MgeID: mge:141 # MgeName: SP6 # Cross-refs: genbank:acc:NP_853590;genbank:gi:31711672;genbank:GeneID:1481798 Probab=97.85 E-value=1.5e-05 Score=47.04 Aligned_cols=443 Identities=11% Similarity=0.045 Sum_probs=175.4 Q ss_pred CCC-CCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH----H Q lcl|Aclame:pro 32 LPN-VGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD----G 105 (535) Q Consensus 32 M~~-v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~----~ 105 (535) |.| +=+.--+-.....+|+.++.--.- +..|++-..-.||-.-..+.+. . +.+| .|=+...+.++ + T Consensus 1 ~~~~~~~~~~~~~~l~~r~~~Lk~~R~~~e~~w~e~~~~tlP~~~~~~~~~----~---~~~~-~~dstg~~a~~~LAa~ 72 (515) T protein:vir:70 1 MQDTILEYGGQRSKIPKLWEKFSKKRSPYLDRAKHFAKLTLPYLMNNKGDN----E---TSQN-GWQGVGAQATNHLANK 72 (515) T ss_pred CcchhhhhcCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCCCCc----c---cccc-cccchHHHHHHHHHHH Confidence 664 112222234455555555222111 4455666666677432111111 1 1111 23333344444 4 Q ss_pred Hhhhhhcc-cc--ccccCH--------------HHHHHHhccC------CCCCCHHHHHHHHHHHHHhhCcEEEEEeecC Q lcl|Aclame:pro 106 MMGQVFSR-DP--IRQLPP--------------ALEAIVEDID------GEGVSLDQQAKKALGYTMGFGRAAIFTDYPN 162 (535) Q Consensus 106 l~G~lF~k-~p--~~~~p~--------------~l~~l~~d~d------~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~ 162 (535) |.+.+|.- .| .+++++ .++.+++.+. ...++++.-+..++.+...+|.+.+++|-+ T Consensus 73 l~~~ltpp~~~WF~l~~~d~~~~~l~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~d~~- 151 (515) T protein:vir:70 73 LAQVLFPAQRSFFRVDLTAKGEKVLDDRGLKKTQLATIFARVETTAMKALEQRQFRPAIVEVFKHLIVAGNCLLYKPSK- 151 (515) T ss_pred HHHhhcCCCCcccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHCeEEEEEeCC- Confidence 44444431 11 112221 1222322222 134578888888999999999999999722 Q ss_pred CCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCccc--------------ceeeE Q lcl|Aclame:pro 163 VGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFET--------------TYVQQ 226 (535) Q Consensus 163 ~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~--------------~~~~~ 226 (535) . + +..|+-.+. -..... ...+.-|+.++.+... ..+|+. ..++. T Consensus 152 ~---------------~-~~~~pl~~y---~v~~d~-~G~v~~i~rr~~~t~~~l~~~f~~~~~~~~~~~~~~~~~~v~i 211 (515) T protein:vir:70 152 G---------------A-MSAVPMHHY---VVNRDT-NGDLMDVILLQEKALRTFDPATRMAIEVGMKGKKCKEDDNVKL 211 (515) T ss_pred C---------------C-eEEEEcCeE---EEeeCC-CcCeeEEEeeeeccHHHHHHhhhhhhhhhhhhhhcCCCCceEE Confidence 1 1 233444442 222222 2233335555543222 122322 12233 Q ss_pred EEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCc---cceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhh Q lcl|Aclame:pro 227 WRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNP---FKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRN 303 (535) Q Consensus 227 ~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~---l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~ 303 (535) |-+..+..++.|. +| .+.++ .. ....++-+ +.+||+.|.... +...|.+|-.+-..=...+... T Consensus 212 ~~~v~~~~~~~~~--~~-~e~d~-------~~-~~~es~y~~~e~P~~~~Rw~~~~--ge~YGrgp~~~~l~D~k~L~~l 278 (515) T protein:vir:70 212 YTHAQYAGEGFWK--IN-QSADD-------IP-VGKESRIKSEKLPFIPLTWKRSY--GEDWGRPLAEDYSGDLFVIQFL 278 (515) T ss_pred EEEEEecCCCceE--EE-EecCc-------ee-eccccccccccCCceeeeeeecC--CCCcccchHHHhhHHHHHHHHH Confidence 3333343333321 11 11111 11 12334433 444444444333 3455666654433333333334 Q ss_pred HHHHHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecCc-chh--HHHHHHHHHHHHHH Q lcl|Aclame:pro 304 SADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITP-NSV--PFEAMTHKESQMIA 378 (535) Q Consensus 304 ~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~-~~l--~~~~l~~~e~qm~~ 378 (535) +-.+-...+.+..|.+.+. |. ..+..+.-|.+..+.-....+.+.++... ..+ ..+.++++++++.. T Consensus 279 ~~~~l~~~~~a~~p~~lv~~~g~--------~~~~~l~~~~~g~iv~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~ 350 (515) T protein:vir:70 279 SEAMARGAALMADIKYLIRPGSQ--------TDVDHFVNSGTGEVITGVAEDIHIVQLGKYADLTPISAVLEVYTRRIGV 350 (515) T ss_pred HHHHHHHHHHhcCCCeeeCcccc--------cchhhccccCCceeecCCcccceeeecCcccchhHHHHHHHHHHHHHHH Confidence 4444455566666665554 22 12223444444333222233455666543 233 34677888887755 Q ss_pred H--hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCceeEEEEecccCCc---cCC Q lcl|Aclame:pro 379 M--GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVNDETVEYNLNTDFPAA---RLT 452 (535) Q Consensus 379 l--ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~~~~~v~~n~df~~~---~~d 452 (535) . .-.+...++...||++...+..--...|.-+-.++..=+- -++.++..=++.....+.+.+.+ ..|... .-+ T Consensus 351 af~~~~l~~rd~~rvTAtEV~~r~~E~~~~LGpv~srL~~Ell~Pli~r~~~~~~p~~P~~~v~~~~-vs~l~~L~r~q~ 429 (515) T protein:vir:70 351 IFMMETMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFAMTMQTPIAMWGLQEAGDSFTSELVDPVI-VTGIEALGRMAE 429 (515) T ss_pred HHhhhhhhccCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhCCCCChhhcccce-ehhHHHHHHHHH Confidence 2 2223444555689999887665444444444444433222 22222222223322222233322 112211 112 Q ss_pred HHHHHHHHHHHh---c------CCCCHHHHHHHHHh-CCCCCccCCHHHHHHHHHhchhhcc---cCCCcCCCCCCCccc Q lcl|Aclame:pro 453 PNERAELILEWQ---Q------GAITFKEMRAGLRR-AGVASEDDAKAETEGKATVEFIAKT---AAAGKVGDAASGGTN 519 (535) Q Consensus 453 ~~~~~al~~l~~---~------G~is~et~~~~L~r-~gvl~~~~~~eee~~~i~~e~~~~~---~~~~~~~~~~~~~~~ 519 (535) .+.+..++.... . ..|....+.+.+.+ .|+-..-...+|+.+.+.++...+- .++...+.+ ..+-- T Consensus 430 ~~~i~~~~q~i~~~~~~~p~~~~~id~d~~~~~~a~~~g~p~~~~rs~eev~~~r~q~~~~~~~~~~~~~~~~a-~~~~~ 508 (515) T protein:vir:70 430 LDKLANFAQYMSLPQTWPEPAQRAIRWGDYMDWVRGQISAELPFLKSEEEMQQEMAQQAQAQQEAMLNEGVAKA-VPGVI 508 (515) T ss_pred HHHHHHHHHHHHHHhccChhHHhhCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHHHHHHHhhhhh-cccch Confidence 222322232221 1 22333333444433 3432222333444444433321110 001100110 00000 Q ss_pred ccccccc Q lcl|Aclame:pro 520 KAKLNNG 526 (535) Q Consensus 520 ~~~~~~~ 526 (535) +..++-| T Consensus 509 ~~~~~~~ 515 (515) T protein:vir:70 509 QQEMKEG 515 (515) T ss_pred hhhhccC Confidence 1111111 No 100 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=97.74 E-value=2.3e-05 Score=46.03 Aligned_cols=459 Identities=12% Similarity=0.057 Sum_probs=172.8 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |.+..--....+. .|....++ .+.. -.|.|.......-..|-|.. .+-+. T Consensus 1 m~~~~~r~~~~~a------------~~~~~~~~--------------~~~~--~~y~gA~~~~r~~~~w~~~~--~s~~~ 50 (553) T protein:vir:63 1 MTKVTVRKLSEVT------------SGRPEQSA--------------SLGG--GGLEGASRLSRETVSWNPSL--RSPDA 50 (553) T ss_pred Ccchhhhhhcccc------------cccchhhh--------------hhhc--ccccccccCCCcccccccCC--CChHH Confidence 3322111111111 11111010 0000 01222111100011122211 11111 Q ss_pred hhHHHHHHHHhhh----ccchhHHHHHHHHhhhhhccccccc------------------cCHHHHHHH----hc----c Q lcl|Aclame:pro 81 EQRRRYETYLQRA----IFYNVTARTLDGMMGQVFSRDPIRQ------------------LPPALEAIV----ED----I 130 (535) Q Consensus 81 E~~~~Y~~rl~rA----~~~n~~~~tv~~l~G~lF~k~p~~~------------------~p~~l~~l~----~d----~ 130 (535) +....-+.-..|| .=.++.+..|+.++..+-....+.+ +-..++.+| ++ | T Consensus 51 ~~~~~~~~lr~RaRdL~rNn~~a~~av~~~~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~ 130 (553) T protein:vir:63 51 LINPLKRIADARGRDMADNDGFTNGAVGYQRDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYI 130 (553) T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCcccee Confidence 1111111111111 1134555555555544433222211 112233333 22 4 Q ss_pred CCCC-CCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEE Q lcl|Aclame:pro 131 DGEG-VSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVI 208 (535) Q Consensus 131 d~~G-~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l 208 (535) |-.| .+++++...+++..+..|-|++..-+.+..+ +..| -+.+++|+.|=+..-...++ .| T Consensus 131 D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~~----------~~~~~~lq~ie~drl~~~~~~~~~~-------~i 193 (553) T protein:vir:63 131 DNAAISTFTGLIRLGVVGYVKTGEVLATAEWDRAAN----------RPYATCFQMVSTDRLSNPYQQLDTP-------TL 193 (553) T ss_pred eccccCCHHHHHHHHHHHHHhCCceEEEeeeccCCC----------CcccceEEEechhhcCCCCCCCCCC-------ee Confidence 6666 5899999999999999999999876543221 1112 46788998885543222111 11 Q ss_pred EEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccc---cccceeeec-cCCCccceeEEEEeccCCCcCC Q lcl|Aclame:pro 209 QENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYY---SYSKHVPTD-GNGNPFKEIPFQFIGPLDNNAD 284 (535) Q Consensus 209 ~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~---~~~~~~~~~-~~~~~l~~IP~v~~~~~~~~~~ 284 (535) +.=++-+ .++. ..-|.++.-. ++.... ....+..+. ....+-..| +-.+...+.+-. T Consensus 194 ~~GVE~d--~~Gr--~vaY~i~~~h--------------Pgd~~~~~~~~~~~~r~~~~~~v~a~~v-lH~f~~~r~gQ~ 254 (553) T protein:vir:63 194 RRGVQYD--KRGR--PQGYWIQVAH--------------PGDLYQMAPDMYKWKFVQQSKPWGRRQV-IHILEPREPDQS 254 (553) T ss_pred EeeeEEC--CCCc--eEEEEeeccC--------------CCccccccccccceeeeccccccChhHh-eecccccCCCcc Confidence 1111111 1111 1122222111 111000 000010000 000111111 112345566677 Q ss_pred CCcchHHHHHHHHHHHHh-hHHHHHHHHHHhcCceeEeeCCCCccc-------------------------hhccCccee Q lcl|Aclame:pro 285 IDHPPLLDLCEVNIGHYR-NSADYEEMAFVAGQPTAFFTGLTKDWV-------------------------EDVFKDFKV 338 (535) Q Consensus 285 ~~~ppL~dLA~ln~~hy~-~~sdl~~~l~~~~~P~~~~~G~~~~~~-------------------------~d~~~~~~i 338 (535) -|.|.|..+...-..+-. ..+.+..+.--+.+...+-++.+.+.. .+......+ T Consensus 255 RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (553) T protein:vir:63 255 RGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELPPEFIHSQMSGGSPNADMVGIFGKYMDALKAYVGGANNI 334 (553) T ss_pred cCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCChhhhhhhcccccccccccccccccccccccccccccce Confidence 778877665322211111 122333333334444333333211100 001112347 Q ss_pred eecCcccccCCCCCccceeecCc-chhHHHHHHHHHHHHHH---Hhhhhhccccc--ccchH-HHHHHHHHHHHHHHH-H Q lcl|Aclame:pro 339 HLGSRAIIPLPQGATAGILQITP-NSVPFEAMTHKESQMIA---MGANLLVKSGG--NRTFG-EAQQEEASEQSILSA-C 410 (535) Q Consensus 339 ~iG~~~~~~lp~~~~~~~~e~~~-~~l~~~~l~~~e~qm~~---lga~~l~~~~~--~~ta~-~a~~~~~~~~S~L~~-~ 410 (535) .+++.++..|++|.+++|+++.- .+-....++.+...|++ +....+..+.. |=++. ++.++........+. + T Consensus 335 ~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~ 414 (553) T protein:vir:63 335 QIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQAGIAMTRRFLEGRKKMC 414 (553) T ss_pred eecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHH Confidence 78899999999999999999874 33333445555555533 22344544432 22222 223333333222222 1 Q ss_pred HH-HHHHHHHHHHHHHHHHcCCC-CCCceeEEE----------EecccCCc---cCCH-HHHHHHHHHHhcCCCCHHHHH Q lcl|Aclame:pro 411 TK-NVSMAFRKALRWANQFQTGI-VNDETVEYN----------LNTDFPAA---RLTP-NERAELILEWQQGAITFKEMR 474 (535) Q Consensus 411 a~-~~~~a~~~~lr~~a~~~g~~-~~~~~~~v~----------~n~df~~~---~~d~-~~~~al~~l~~~G~is~et~~ 474 (535) +. -|.-.++..|+.+ -..|.. ..+....+. +.-+|... -+|+ .++++...++.+|..|++... T Consensus 415 ~~~~~~pi~~~wl~~a-~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~~~~i~~G~~t~~~~~ 493 (553) T protein:vir:63 415 ADRLATEFFTLWLEEA-IAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAAVMRIDAGLSTYEREI 493 (553) T ss_pred HHHHHHHHHHHHHHHH-HHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHH Confidence 11 2223333333322 222321 111110000 01112211 1233 489999999999999999654 Q ss_pred HHHHhCCCCCccCCHHHHHHHHHhchhh--cccCC--CcCCCCCCCcccccccccccCC----CCCCCC Q lcl|Aclame:pro 475 AGLRRAGVASEDDAKAETEGKATVEFIA--KTAAA--GKVGDAASGGTNKAKLNNGNGG----GNQAGN 535 (535) Q Consensus 475 ~~L~r~gvl~~~~~~eee~~~i~~e~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 535 (535) ..+| . ++++..+.+..|... ...+. ..+....+++ ..++..+...+ +.+.|- T Consensus 494 ---a~~G-~----D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e 553 (553) T protein:vir:63 494 ---ARLG-G----DFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDG-RDAATGIAEDPAAAQTSQQGE 553 (553) T ss_pred ---HHhC-C----CHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCC-cccCCCCCCCCCCCCcccccC Confidence 4445 3 355544444443221 11111 1111111111 11111111111 111111 No 101 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=97.72 E-value=2.5e-05 Score=45.77 Aligned_cols=422 Identities=15% Similarity=0.116 Sum_probs=195.5 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCC-CC-ccCHHHHHHHHHHHHH-HHHhcChHHHHHHHhhhCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPN-VG-YQRVEFGEMLPKWRKI-MDCLSGQEAIKAKREEYLPMPSVDS 77 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~-v~-~~hp~y~~~~~~w~~i-~d~~~G~~~~~~~g~~YLP~~~~~~ 77 (535) |++---.--|-++...+..||++-.+|+.-.++. +. .-.|. +|..+ +..-.| +++ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~------~l~~il~~a~~g----------d~~------ 58 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPA------KLAHILIEAEQG----------HLQ------ 58 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHH------HHHHHHHhhhCC----------CHH------ Confidence 7765555555666667777777666665433331 11 12232 23222 122222 111 Q ss_pred CChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCH-------H----HHHHHhccCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 78 RDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPP-------A----LEAIVEDIDGEGVSLDQQAKKALG 146 (535) Q Consensus 78 ~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~-------~----l~~l~~d~d~~G~~L~~~~~~~~~ 146 (535) ..-+-|+....| -.++...++.....|...++.+.-+. . ++.++.++ .+++.++..++. T Consensus 59 ---~~~~L~~~m~e~---D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~----~~f~~~i~~~ld 128 (528) T protein:vir:10 59 ---AQAELFMDMEER---DAHLFAEMSKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDL----EGIEDLMLDCMD 128 (528) T ss_pred ---HHHHHHHHHHhh---ChHHHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCC----ccHHHHHHHHHh Confidence 112345655544 45777777777777777777775321 1 22233332 247777766655 Q ss_pred HHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeE Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQ 226 (535) Q Consensus 147 ~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~ 226 (535) ++.+|.+.+=+- |+.+ +|.-.+..+.++ +...|. T Consensus 129 -a~~~G~s~~Ei~--------------------------------w~~~--~g~~~~~~~~~r-----~~~~f~------ 162 (528) T protein:vir:10 129 -GVGHGYSAIELD--------------------------------WSLQ--GREWLPQAFDHR-----PQSWFQ------ 162 (528) T ss_pred -hhhhcceeEEEE--------------------------------Eeec--CCceeEEEeeee-----ccccee------ Confidence 556776555332 2211 111111111111 000110 Q ss_pred EEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 227 WRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSAD 306 (535) Q Consensus 227 ~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sd 306 (535) .+.++..+++. .+ +. . ..++. .+.++| ++.+....+...+.+.|..++..-+--.....+ T Consensus 163 -----~~~~~~~~l~~--~~--~~-~----~g~~l----~~~k~i--v~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~ 222 (528) T protein:vir:10 163 -----LNPDDQDELRL--RD--NS-I----AGEVL----QPFGWI--MHKPRSRSGYVARSGLFRVLAWPYLFKHYSTAD 222 (528) T ss_pred -----eccCCCcEEec--cC--CC-C----Cceee----cCCCeE--EEeecCCCCCccccchHHHHHHHHHHHHhhHHH Confidence 00111101110 00 00 0 00000 111211 122333344455666676666655544456677 Q ss_pred HHHHHHHhcCceeEeeCCCCccch--hccCcceeeecCcccccCCCCCccceeecCcchhH-H-HHHHHHHHHHHH--Hh Q lcl|Aclame:pro 307 YEEMAFVAGQPTAFFTGLTKDWVE--DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-F-EAMTHKESQMIA--MG 380 (535) Q Consensus 307 l~~~l~~~~~P~~~~~G~~~~~~~--d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~-~~l~~~e~qm~~--lg 380 (535) ...-++.-|.|+++.+--.....+ +.+...--.+|..++..+|.+....|++..+.+.. + ..++...++|.. || T Consensus 223 w~~f~E~yG~P~~igky~~~a~~~ek~~L~~al~~i~~~~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLG 302 (528) T protein:vir:10 223 LAEMLEIYGLPIRLGKYPPGTPDEEKVTLLRAVTGLGHAAAGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAILG 302 (528) T ss_pred HHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHHhh Confidence 888888889999998743222222 22222224478889999999999999998765443 3 345555566543 45 Q ss_pred hhhhcccccccchHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCC-CCc-eeEEEEecccCCccCCHHH Q lcl|Aclame:pro 381 ANLLVKSGGNRTFGE--AQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIV-NDE-TVEYNLNTDFPAARLTPNE 455 (535) Q Consensus 381 a~~l~~~~~~~ta~~--a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~-~~~-~~~v~~n~df~~~~~d~~~ 455 (535) .-+.......++++. +..........+.+-+..++++++ +++++++.|-.... +.. -..|++ ++....-.... T Consensus 303 qtlTs~~~~g~~gS~Alg~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~--~~~e~eDl~~~ 380 (528) T protein:vir:10 303 GTLTSQTSESGGGAYALGQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVF--DLKDRADLAAM 380 (528) T ss_pred hhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEe--cCCCcccHHHH Confidence 433333222233332 334455556778889999999997 59999998864321 111 123332 22222111345 Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCC Q lcl|Aclame:pro 456 RAELILEWQQGA-ITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAG 534 (535) Q Consensus 456 ~~al~~l~~~G~-is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (535) ++++.++...|. |+.+.+.+ +.|+-.+. ..|++.. .+ ..++...... ..+...... ..+.+..... T Consensus 381 a~~~~~L~~~G~~i~~~~i~e---~~gip~p~-~~e~~~~---~~----~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 447 (528) T protein:vir:10 381 ATSLPPLVKLGVQVPVNWVQE---QLGIPLPA-NGEAVLG---DQ----AGAGIAQLSR-RPGPRIAAL-AQVIGPRYRD 447 (528) T ss_pred HHHHHHHHhCCCCCCHHHHHH---HhCCCCCC-CCccccc---CC----CcccccccCc-ccccccccc-cccccccccc Confidence 677778888888 78765543 44653222 2222211 01 0000000000 000000000 0011111111 Q ss_pred C Q lcl|Aclame:pro 535 N 535 (535) Q Consensus 535 ~ 535 (535) + T Consensus 448 ~ 448 (528) T protein:vir:10 448 Q 448 (528) T ss_pred c Confidence 1 No 102 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=97.61 E-value=3.8e-05 Score=44.80 Aligned_cols=449 Identities=12% Similarity=0.103 Sum_probs=189.8 Q ss_pred CCCCCccCHHHHHHHHHHHHHHH---HhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMD---CLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMG 108 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d---~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G 108 (535) |.- .+ -=+=.....+|+.+++ .+ ...|++-..-.||..-..+.+.... +..+ .|-+...+.++.++. T Consensus 1 ~~~-~~-~~~~~~~~~r~~~l~~~R~~~--e~~w~e~~~y~lP~~~~~~~~~~~~-----~~~~-~~dst~~~a~~~Las 70 (522) T protein:vir:94 1 MAE-RE-GFAAEGAKAVYDRLKNGRQPY--ETRAQNCAAVTIPSLFPKESDNSST-----EYTT-PWQAVGARCLNNLAA 70 (522) T ss_pred Ccc-cc-hhhHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhcccccCCCCCcccc-----cccc-cccccHHHHHHHHHH Confidence 662 11 1111233344444333 22 3445555555566543222221111 1111 344444555555444 Q ss_pred hh----hcccccc--ccC--------------HHHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecC Q lcl|Aclame:pro 109 QV----FSRDPIR--QLP--------------PALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPN 162 (535) Q Consensus 109 ~l----F~k~p~~--~~p--------------~~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~ 162 (535) .+ |-..|=+ .+. ..++.+++.|.. ..++++.-+..++.+...+|.+.++|+-+. T Consensus 71 ~l~~~ltP~~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~ 150 (522) T protein:vir:94 71 KLMLALFPQSPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVERVLMAYMETNSFRVPLFEALKQLIVSGNCLLYIPEPE 150 (522) T ss_pred HHHhhcCCCCcccccccchhhhhccCcccchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeeccC Confidence 44 4211211 111 123333333221 235688888889999999999999987554 Q ss_pred CCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCc----------ccceeeEEEEE Q lcl|Aclame:pro 163 VGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGF----------ETTYVQQWRVL 230 (535) Q Consensus 163 ~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f----------~~~~~~~~rvl 230 (535) .+.. ..+..|+-.+. -.... +..++.-|+.++.+..+. ..| ....++-|... T Consensus 151 ~~~~------------~~~~~~pl~~y---~v~~d-~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v 214 (522) T protein:vir:94 151 QGTY------------SPMRMYRLVSY---VVQRD-AFGNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHI 214 (522) T ss_pred CCce------------eeEEEEEcceE---EEeeC-CCcCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEE Confidence 4331 13455555543 22222 233444455555542210 111 12344444444 Q ss_pred eecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 231 QLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 231 ~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) ++..+ .|. |..+.. +..+....+..++..-||++... ...+...|..|..+...-...+...+-..-. T Consensus 215 ~~~~~-~~~---~~~~~~-------g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~ 283 (522) T protein:vir:94 215 YRQDD-EYL---RYEEVE-------GIEVTGTDGSYPLTACPYIPVRMVRLDGEDYGRSYCEEYLGDLNSLETITEAITK 283 (522) T ss_pred EeeCC-cee---EEeecc-------CceecccCCCCccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 45332 221 222211 11222223333455566654432 2344566777877666655666666666666 Q ss_pred HHHHhcCceeEee--CCCCccchhccCccee-eecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHHH-hhh Q lcl|Aclame:pro 310 MAFVAGQPTAFFT--GLTKDWVEDVFKDFKV-HLGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIAM-GAN 382 (535) Q Consensus 310 ~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i-~iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~l-ga~ 382 (535) ..+.+..|...+. |.. .+..+ ..|++.++. ....+.+.++.. +..+ ..+.++++++++... -.. T Consensus 284 ~~~~~~~p~~~v~~~g~~--------~~~~~~~~~~g~~v~-g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~ 354 (522) T protein:vir:94 284 MAKVASKVVGLVNPNGIT--------QPRRLNKAATGEFVA-GRVEDINFLQLTKGQDFTIAKSVADAIEQRLGWAFLLN 354 (522) T ss_pred HHHHHhCCceeecccccc--------cchheeccCCceeec-CCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhh Confidence 7777777776653 221 11223 233333332 222334555543 2233 356788888887552 122 Q ss_pred hh-cccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCC--CCCCceeEEEEecccCCccC--- Q lcl|Aclame:pro 383 LL-VKSGGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQTG--IVNDETVEYNLNTDFPAARL--- 451 (535) Q Consensus 383 ~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~g~--~~~~~~~~v~~n~df~~~~~--- 451 (535) ++ ..+....||++...+.......|.-+-.++.+ .+++++.++.+ .|. ....+.+++ +|.+.-- T Consensus 355 ~~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r-~g~lP~~p~~~v~v----~~~s~La~~q 429 (522) T protein:vir:94 355 SAVQRNAERVTAEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLMNQLQS-AGMIPDLPKEAVEP----TVSTGLEALG 429 (522) T ss_pred hhccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCcccEEe----eEecHHHHHH Confidence 22 34556789999887765555555555444432 33455555544 232 122222333 3332210 Q ss_pred CHHHHHHHHHHHh----------cCCCCHHHHHH-HHHhCCCCCc-c-CCHHHHHHHHHhchhhcccCCCcCCCCCCCcc Q lcl|Aclame:pro 452 TPNERAELILEWQ----------QGAITFKEMRA-GLRRAGVASE-D-DAKAETEGKATVEFIAKTAAAGKVGDAASGGT 518 (535) Q Consensus 452 d~~~~~al~~l~~----------~G~is~et~~~-~L~r~gvl~~-~-~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~ 518 (535) -.+.++.+....+ .-.|....+.+ .....||-++ - .+.+|.....+++...+...+..... +.. T Consensus 430 r~~~~~~l~~~~~~ia~l~P~~~~~~id~d~~~~~~a~~~Gv~~~~ivr~~ee~~~~~~q~~~~~~~~~~~~~~---~~~ 506 (522) T protein:vir:94 430 RGQDLEKLTQAVNMMTGLQPLSQDPDINLPTLKLRLLNALGIDTAGLLLTQDEKIQRMAEQSSQQAVVQGASAA---GAN 506 (522) T ss_pred HHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHcCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHH---HHH Confidence 1122333332222 11233333333 3355676333 2 23344433333322111111100000 000 Q ss_pred cccccccccCCCCCCC Q lcl|Aclame:pro 519 NKAKLNNGNGGGNQAG 534 (535) Q Consensus 519 ~~~~~~~~~~~~~~~~ 534 (535) ..+..-++++-.-.++ T Consensus 507 ~~a~~~~~~~~~~~~~ 522 (522) T protein:vir:94 507 MGAAVGQGAGEDMAQA 522 (522) T ss_pred hhhhhhcccchhhhcC Confidence 0011111111110011 No 103 >protein:vir:99672 Length: 532 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249587;genbank:gi:68299738;genbank:GeneID:3799987 Probab=97.60 E-value=3.9e-05 Score=44.75 Aligned_cols=458 Identities=10% Similarity=0.080 Sum_probs=186.3 Q ss_pred CCCCCccCHHHHHHHHHHHHHHH---HhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH---- Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMD---CLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD---- 104 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d---~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~---- 104 (535) |+...+.--.-.....+|+.+++ .+ ...|++-..-.||..-..+.. .+..+ ..+ .|-+...+.++ T Consensus 1 m~~~~~~~~~~~~~~~r~~~l~~~R~~~--e~~w~e~~~~~lP~~~~~~~~-~~~~~----~~~-~~dst~~~a~~~LAa 72 (532) T protein:vir:99 1 MAEVEKTGFAADGAAAAYNRLKNDRGAY--ETRAEDCATYTIPSVFPSATA-DGSTS----YTT-PWQSIGARGLNNLAS 72 (532) T ss_pred CcchhhccccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhhhcccCCCCC-cchhh----ccc-cccchHHHHHHHHHH Confidence 88655421112333344444333 33 445666666667764222211 11221 111 23333344444 Q ss_pred HHhhhhhc--ccc-ccccCH--------------HHHHHHhccC------CCCCCHHHHHHHHHHHHHhhCcEEEEEeec Q lcl|Aclame:pro 105 GMMGQVFS--RDP-IRQLPP--------------ALEAIVEDID------GEGVSLDQQAKKALGYTMGFGRAAIFTDYP 161 (535) Q Consensus 105 ~l~G~lF~--k~p-~~~~p~--------------~l~~l~~d~d------~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p 161 (535) +|.+.+|. +++ .+.+++ .++.+++.|. ...++++.-+..++.+...+|.+-++++-+ T Consensus 73 ~L~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~ 152 (532) T protein:vir:99 73 KLMLALFPVGSSFFKLNVSELEVKQSITSPEELTEIATGLAMVERICMNYMESNSFRPTLHAAIKQLLVAGNVLLYIPST 152 (532) T ss_pred HHHHhhcCCCCccccccCCHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCcEeEEeccc Confidence 44455543 111 112221 2344443321 134578888888999999999999999744 Q ss_pred CCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCc------------ccceeeEE Q lcl|Aclame:pro 162 NVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGF------------ETTYVQQW 227 (535) Q Consensus 162 ~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f------------~~~~~~~~ 227 (535) .... +....+..|+-.++ -+..+ +..++.-|+.|+.+..+. +.| -...++-| T Consensus 153 ~~~~----------~~~~~f~~~pl~~y-~v~~d---~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~p~~~v~v~ 218 (532) T protein:vir:99 153 EQVE----------GQSNAPKLYKLHNF-VVERD---AYDNVLQIVTEDKIARAALPEDVRKSLEDAQGDQNPSEEVTIY 218 (532) T ss_pred cccc----------CcccceEEEEcCeE-EEeeC---CCCCeeeEeeeeeecHHhcChHHHHHhhccccccCCCcceEEE Confidence 3221 11234555555543 22222 233444455565442111 111 11223333 Q ss_pred EEEeecCCce-EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 228 RVLQLNAEGN-YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 228 rvl~l~~~g~-y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) ...++..++. |.+..| .. +..+....++.++...||++... ...+...|.+|..+...-...+...+- T Consensus 219 ~~v~~~~~~~~~~~~~~---~~-------g~~~~~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~ 288 (532) T protein:vir:99 219 THVYRDPEAMVFRSYQE---ID-------GEIVAGTEGEYPLDSCPWIPVRLIKMPNEDYGRSFVEEYLGDLKSLENLYE 288 (532) T ss_pred EEEEecCCCCeeEEEEe---ec-------CceecccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHH Confidence 3334433332 222111 11 11122223444455556654432 233445666776544333333333344 Q ss_pred HHHHHHHHhcCceeEee-CCCCccchhccCccee-eecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHHH- Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKV-HLGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIAM- 379 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i-~iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~l- 379 (535) ..-...+.+..|.+.+. +.. ..+..+ ..|++.++. ....+.+.++.. +..+ ..+.++++++++... T Consensus 289 ~~l~~~~~a~~~~~lv~p~g~-------~~~~~~~~~~~g~~v~-g~~~~i~~~~~~~~~~~~~~~~~i~~~~~rI~~af 360 (532) T protein:vir:99 289 AIVKMSMISSKVLFFVNPNGV-------TQIRRVAKANTGDFVA-GRKQDVEVFQLEKYNDFQVAKATADDIEKRLSYAF 360 (532) T ss_pred HHHHHHHHHcCCCceeccccc-------cchhhhccCCCcceec-CCcccceeeecccccchhHHHHHHHHHHHHHHHHH Confidence 44444455555554432 211 111122 223333332 111234445433 2333 346788888877542 Q ss_pred -hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCceeEEEEecccCCccC Q lcl|Aclame:pro 380 -GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGI--VNDETVEYNLNTDFPAARL 451 (535) Q Consensus 380 -ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~--~~~~~~~v~~n~df~~~~~ 451 (535) .-.+...+....||++...+..-....|.-+-.++. -.+++++.++-+ .|.. ...+-+...+ ..+...=. T Consensus 361 ~~~~~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r-~g~lP~~p~~~~~~~i-v~~is~La 438 (532) T protein:vir:99 361 MLNSAVQRGGDRVTAEEIRYVAGELEDTLGGVYSLLSQELQLPLVKILLKELQA-TSKIPNLPKEAVEPAI-ATGLEALG 438 (532) T ss_pred hhhhcccCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCChhhcccce-eecchHHH Confidence 112223455668999988766555555555444433 233555555544 2221 1111112221 11211111 Q ss_pred CHHHHHHHHHHHh---------cCCCCHHHHHHHH-HhCCCCCc-cCCHHHHHHHHHhchhhc---ccCCCcCCCCCCCc Q lcl|Aclame:pro 452 TPNERAELILEWQ---------QGAITFKEMRAGL-RRAGVASE-DDAKAETEGKATVEFIAK---TAAAGKVGDAASGG 517 (535) Q Consensus 452 d~~~~~al~~l~~---------~G~is~et~~~~L-~r~gvl~~-~~~~eee~~~i~~e~~~~---~~~~~~~~~~~~~~ 517 (535) -+|.+..++...+ .-.|.-..+.+.+ ...||-++ -...+|+...+.++...+ ..+....+..+ + T Consensus 439 raq~~~~l~~~~~~laq~~p~~~d~id~d~~~~~~a~~~GV~~~~i~r~~ee~~~~~~q~~~~~~~~~a~~~~~~~~--~ 516 (532) T protein:vir:99 439 RGHDLNKLNVFIDYMIKLAGLQDDDINLLDVKMRLANSLGMDTTGLILTQQDKQAKMAEASTAAGMVTAGQQMGAAG--G 516 (532) T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhCCHHHHHHHHHHHhCCChhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H Confidence 1233333322211 1234344444444 44676332 334444444343321111 01111111111 1 Q ss_pred ccccccccccCCCCCC Q lcl|Aclame:pro 518 TNKAKLNNGNGGGNQA 533 (535) Q Consensus 518 ~~~~~~~~~~~~~~~~ 533 (535) ...++.+-.-.|-+|+ T Consensus 517 ~~~~~~~~~~~~~~~~ 532 (532) T protein:vir:99 517 QAAAAMMQQQAGMPTQ 532 (532) T ss_pred HhcchhHHhhcCCCCC Confidence 1111221111222333 No 104 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=97.59 E-value=4.1e-05 Score=44.66 Aligned_cols=432 Identities=12% Similarity=0.056 Sum_probs=185.7 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |. ++ .-||...+.+|=+.+-. ...-+..|.++... + .|.. . T Consensus 1 ~~-----------~~-~~~~~p~~~~g~~~~~~-~~~~~~~~~~~e~~-----~--------------~lr~-------~ 41 (469) T protein:vir:10 1 MT-----------ER-VKTAAPVSEAGYVFGSG-VVDGWTVWDPFEQT-----P--------------ELQW-------P 41 (469) T ss_pred CC-----------Cc-ccCCCCccchhhhhhcc-cccchhhccccccc-----c--------------cccc-------c Confidence 11 11 11222223444332221 00001111110000 0 0100 1 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhcccccccc---CHH----HHH-HHhccC-----------CCCCCHHHHH Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQL---PPA----LEA-IVEDID-----------GEGVSLDQQA 141 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~---p~~----l~~-l~~d~d-----------~~G~~L~~~~ 141 (535) ..-+.|+....| -.++...++.....|.+.++.++- ++. ++. |...+. ....+...++ T Consensus 42 ~~~~ly~~m~e~---D~~i~s~l~~rk~av~~~~w~v~p~~~~~e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l 118 (469) T protein:vir:10 42 QSVAVYSRMDNE---DSRVTSLLEAISLPIRSTPWRIRANGASDEVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHL 118 (469) T ss_pred cchHHHHHHHhh---ChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHH Confidence 123356665554 356667777777777777776642 222 111 111111 1134577788 Q ss_pred HHHHHHHHhhCcEEE-EEeecCCC--cccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCC Q lcl|Aclame:pro 142 KKALGYTMGFGRAAI-FTDYPNVG--RPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDD 217 (535) Q Consensus 142 ~~~~~~~l~~G~~~v-lVD~p~~~--~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d 217 (535) ......++.+|.+.+ +|+.+... .+. ..| .+...+++.|-.|.++..+|.. .++..-.. T Consensus 119 ~~~l~~a~~~G~s~~Eivw~~~~~~~dG~---------~~~~~l~~rp~~~i~~~~~~~~~~l~-----~~~~~~~~--- 181 (469) T protein:vir:10 119 EEVTSPTLQFGHAVFEQVYRPRNQSPDGR---------FWLRKLAPRPQWTISKFNVAPDGGLE-----SIEQIAPP--- 181 (469) T ss_pred HHHHHHhhhhCceeeeeeeecccccCCCc---------eeeeeeeecCcccceeeeeccCCcee-----eeeecCcc--- Confidence 888888888998887 45433211 000 011 2223333334344444433211 11110000 Q ss_pred CcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHH Q lcl|Aclame:pro 218 GFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVN 297 (535) Q Consensus 218 ~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln 297 (535) +..+...|. .. ....++ .+.++|=+ .+....+...+.+.|..++..- T Consensus 182 ------------------~~~~~~~~~----~~-----~~~~~l----p~~k~i~~--~~~~~~g~p~g~gLlr~~~~~~ 228 (469) T protein:vir:10 182 ------------------ARTRGSLYV----AN-----IAPPEI----PVNRLVVY--TRNKRPGQWQGKSILRSAYKHW 228 (469) T ss_pred ------------------ccccccccc----CC-----CCcccc----ccCcEEEE--EecCCCCCcccchhHHHHHHHH Confidence 000000000 00 000000 11122222 2333344455666676666554 Q ss_pred HHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhcc--C--cceeeecCcccccCCCCCccceeecCcchhHH-HHHHHH Q lcl|Aclame:pro 298 IGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVF--K--DFKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHK 372 (535) Q Consensus 298 ~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~--~--~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~ 372 (535) +---....+...-++.-+.|+++.+.-.....++.. . -..+..|.++++.+|.+.+..+++.++++... +.++.. T Consensus 229 ~fK~~~~~~w~~f~EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~~a~~iip~~~~ie~~ea~g~~~~~~~li~~~ 308 (469) T protein:vir:10 229 LLKDKLLRIEAATAERNGMGIPVGTASSATDEDEVRKMAALARSVRGGINAGVGLAQGQILELLGVSGNLPDIRRAIEGH 308 (469) T ss_pred HHHHHHHHHHHHHHHHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCCceEEEccCCceEEEeecCCCchHHHHHHHHH Confidence 433346667777778889999998854433322221 1 12244588888899999999999988876554 445555 Q ss_pred HHHHHH--HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCceeEEEEecccCCc Q lcl|Aclame:pro 373 ESQMIA--MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVNDETVEYNLNTDFPAA 449 (535) Q Consensus 373 e~qm~~--lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~~~~~v~~n~df~~~ 449 (535) .++|.. ||--+.. .....+-..+..........+.+.+..++++++ +++++++.+--. .+.....|.+.. . . T Consensus 309 d~~Isk~iLG~tlTs-~~~gGS~a~~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g-~~~~~P~~~~~~-~--e 383 (469) T protein:vir:10 309 DRSIALSGLAHFLNL-DGKGGSYALASVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFG-VDTPAPVLTFDP-I--G 383 (469) T ss_pred HHHHHHHHhcccccc-cCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCccEEEecC-C--C Confidence 566643 3433333 221233333444455556678899999999997 589988887532 122223454321 1 1 Q ss_pred cCCHHHHHHHHHHHhcCCCCH-HHHHHHH-HhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 450 RLTPNERAELILEWQQGAITF-KEMRAGL-RRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 450 ~~d~~~~~al~~l~~~G~is~-et~~~~L-~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (535) ..+...++++.++.+.|.+.. +....++ ++.|+-.+.+ .+......+........+++....++...+...+ T Consensus 384 ~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 457 (469) T protein:vir:10 384 SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELN-DTPSAEPEEPAAVPNQSAAPARTRSSGNADARAR----- 457 (469) T ss_pred CcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCC-CcccccchhcccCCCCCccccccCCCCCcccccc----- Confidence 222345667778888887431 1111222 4456532222 1222111111000000000000000000000000 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 528 GGGNQAGN 535 (535) Q Consensus 528 ~~~~~~~~ 535 (535) ...+..+= T Consensus 458 ~~~~~~~~ 465 (469) T protein:vir:10 458 APKADQGV 465 (469) T ss_pred cCCChHHh Confidence 00000000 No 105 >protein:vir:95315 Length: 559 # NCBI annotation: putative head-to-tail-joining protein # Family: family:all:481 # MgeID: mge:1564 # MgeName: phiV10 # Cross-refs: genbank:acc:YP_512261;genbank:gi:89152428;genbank:GeneID:3952984 Probab=97.58 E-value=4.2e-05 Score=44.59 Aligned_cols=457 Identities=9% Similarity=0.027 Sum_probs=184.6 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhh-HHHHHHHHhhhccchhHHHHHH----HH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQ-RRRYETYLQRAIFYNVTARTLD----GM 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~-~~~Y~~rl~rA~~~n~~~~tv~----~l 106 (535) |.+-+. -++.+.....+--|.-+ +..|++...-.||....+..+..+ ......+ .|-+...+.++ .| T Consensus 1 m~~~~~--~~l~~r~~~l~~~R~~~--e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~----~~dst~~~a~~~Las~l 72 (559) T protein:vir:95 1 MAETTK--ERLNKQFAQLESERQSF--EPHWRELSDYINPRGSRFLTSEVNRNDRRNTR----IIDSTGTMAARTLASGM 72 (559) T ss_pred CChhhH--HHHHHHHHHHHHHhhHH--HHHHHHHHHHhccccCCcCCCCCCcccccccc----cccchHHHHHHHHHHHH Confidence 874221 12333333333344445 556777767778876443222211 1111111 23344444444 44 Q ss_pred hhhhhc-ccccc--ccC-------HHHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchH Q lcl|Aclame:pro 107 MGQVFS-RDPIR--QLP-------PALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVL 170 (535) Q Consensus 107 ~G~lF~-k~p~~--~~p-------~~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~a 170 (535) .+.+|. ..|=+ .++ ..++.+++.|.. ...+++.-+..+.++.+.+|.+.+++|...... T Consensus 73 ~~~ltpp~~~WF~l~~~d~~~~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~Gta~l~~~~d~~~~----- 147 (559) T protein:vir:95 73 MSGITSPARPWFRLATPDPEMMDYGPVKLWLEAVQNRMNDMFNKSNLYQSLPQLYGSLGTYSTGAMAVLDDDEDI----- 147 (559) T ss_pred HHhhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeEeecCCCce----- Confidence 444443 11111 221 123333322211 234678878888999999999999998533221 Q ss_pred HHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCccc-----------------ceeeEEEEEe Q lcl|Aclame:pro 171 EQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFET-----------------TYVQQWRVLQ 231 (535) Q Consensus 171 d~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~-----------------~~~~~~rvl~ 231 (535) .++..|+..++ -....+..++.+ |..++.+... ...|+. +.++-|-..+ T Consensus 148 --------~r~~~~~l~~~---~v~~d~~G~vd~-i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~ 215 (559) T protein:vir:95 148 --------IRTMPFPIGSY---YLANSPRGSVDT-CFRKFSMTVRQLVQEFGLNNVSESVKSMWESGTYEKWIEVMHSVY 215 (559) T ss_pred --------eEEEEeecCeE---EEeeCCCCCeEE-EEEeEecCHHHHHHHcCcccCCHHHHHHHhcCCCCCeEEEEEEEe Confidence 34555665554 233333333333 3333322211 122221 1122221112 Q ss_pred ecCCce----------EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 232 LNAEGN----------YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 232 l~~~g~----------y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) +..++. |. .+|..... .+..+..+++=+.+.+||+.|....+...+.+. |..+...-...+. T Consensus 216 pr~~~~~~~~~~~~~pf~-s~~~e~~~------~~~~~l~esg~~e~P~~~~Rw~~~~ge~YGrg~-P~~~al~d~k~L~ 287 (559) T protein:vir:95 216 PNIDRDTSKLDSKNKPFK-SVYYEVGG------DNDKLLRESGFDEFPIMAPRWEVNGEDVYGSSC-PGMLALGPVKALQ 287 (559) T ss_pred ccccccccccccccceEE-EEEEEecC------CCceeeecCCcccCCccceeeeecCCccccccc-hHHHhhHHHHHHH Confidence 211110 11 11111100 011222233334566666666654444443332 3333323333333 Q ss_pred hhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCC---ccceeecCcchhH--HHHHHHHHHHH Q lcl|Aclame:pro 302 RNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGA---TAGILQITPNSVP--FEAMTHKESQM 376 (535) Q Consensus 302 ~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~---~~~~~e~~~~~l~--~~~l~~~e~qm 376 (535) ..+-..-..++.+..|.+.+..- . ...++.+.++.....+... ....+.....++. .+.+++++++| T Consensus 288 ~l~~~~l~~~~~~~~pp~~v~~~-------~-~~~~~~l~pgg~~~~~~~~~~~~i~p~~~~~~~~~~~~~~i~~~~~rI 359 (559) T protein:vir:95 288 LLQKRKSQLIDKATNPPMVAPTS-------L-KNQRASLLPGDITYIDQITGQDGFRPAYLVNPSTADLVADIQDTRQII 359 (559) T ss_pred HHHHHHHHHHHHHhcCceecccc-------c-cccceeeeccceeeeCCCCCcccceeecccccchHHHHHHHHHHHHHH Confidence 34444556667777776655421 0 1123555555555443322 1222222112222 34477777777 Q ss_pred HHH-hh---hhh-cccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCC------CCCceeEE Q lcl|Aclame:pro 377 IAM-GA---NLL-VKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGI------VNDETVEY 440 (535) Q Consensus 377 ~~l-ga---~~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~------~~~~~~~v 440 (535) ... -+ .++ ..+....||++...........|.-+-.++. -.+++++.++.+- |.. ..+..+++ T Consensus 360 ~~af~~d~~~~l~~r~~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r~-g~lP~~p~~l~~~~i~v 438 (559) T protein:vir:95 360 NSAYFVDLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDECLNPLIDRSFSMMVRK-NMLPPPPDVMEGMPLKV 438 (559) T ss_pred HHHhhhhhHHHhhcCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCcccccCcceEE Confidence 542 11 123 3456667999998766554445555544443 3345666666552 221 11122222 Q ss_pred EEecccCCccCCHH---HHH---HHHH----HHhc-----CCCCHHHHHHH-HHhCCCCCccCCHHHHHHHHHhchh--- Q lcl|Aclame:pro 441 NLNTDFPAARLTPN---ERA---ELIL----EWQQ-----GAITFKEMRAG-LRRAGVASEDDAKAETEGKATVEFI--- 501 (535) Q Consensus 441 ~~n~df~~~~~d~~---~~~---al~~----l~~~-----G~is~et~~~~-L~r~gvl~~~~~~eee~~~i~~e~~--- 501 (535) + |...-.-++ .+. .++. +.+. ..|....+.+. ....||-..-...+++.+.+.++.. T Consensus 439 ~----~is~La~aqk~~~~~~i~~~~~~~~~laq~~Pevld~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~rqqr~~~q 514 (559) T protein:vir:95 439 E----YISVMAQAQKSIGLSSLASTVNFIGQLAQVKPEALDKLNVDQAIDAFADMSGVSPTVIVPQEQVEQARQQRAQQQ 514 (559) T ss_pred E----eecHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhcCCHHHHHHHHHHHhCCchhhcCCHHHHHHHHHHHHHHH Confidence 2 332211111 111 1111 1111 12444444443 3556664333344454443322210 Q ss_pred -------h---cccCCCcCCCCCCCcccccc--cccccCCCCCCC Q lcl|Aclame:pro 502 -------A---KTAAAGKVGDAASGGTNKAK--LNNGNGGGNQAG 534 (535) Q Consensus 502 -------~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 534 (535) . ....+....++..++.+... .+-.+|++.++- T Consensus 515 q~~q~~~~~~~aa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 559 (559) T protein:vir:95 515 QQQQMMAMGMAAAQGVKTLSEAKTSDPSVLSAMANAVSGQGGQSQ 559 (559) T ss_pred HHHHHHHHHHHHHHhhhccccccCCChhHHHHHHHhhcCccccCC Confidence 0 01111111222111111111 122223333333 No 106 >protein:vir:7321 Length: 556 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:143 # MgeName: epsilon15 # Cross-refs: genbank:acc:NP_848212;genbank:gi:30387383;genbank:GeneID:2641872 Probab=97.55 E-value=4.6e-05 Score=44.34 Aligned_cols=456 Identities=10% Similarity=0.015 Sum_probs=184.6 Q ss_pred CCCCCccCHHHHHHHHHHHHH---HHHhcChHHHHHHHhhhCCCCCCCCCChh-hHHHHHHHHhhhccchhHHHHHH--- Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKI---MDCLSGQEAIKAKREEYLPMPSVDSRDEE-QRRRYETYLQRAIFYNVTARTLD--- 104 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i---~d~~~G~~~~~~~g~~YLP~~~~~~~~~E-~~~~Y~~rl~rA~~~n~~~~tv~--- 104 (535) |.+.+. .....+|+.+ |.-+ +..|++...-.||....+..+.. .......+ .|-+...+.++ T Consensus 1 m~~~~~-----~~l~~r~~~l~~~R~~~--e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~----~~dst~~~a~~~La 69 (556) T protein:vir:73 1 MAETEK-----ERLLKQLAQLKNERTSF--ESHWLDLSDFINPRGSRFLTSDVNRDDRRNTK----IVDPTGSMAQRILS 69 (556) T ss_pred CChhhH-----HHHHHHHHHHHHHhhHH--HHHHHHHHHHhccccCCcCCCCCCcchhhcCc----cccchHHHHHHHHH Confidence 875332 2333444433 3333 55567766667886544322222 11211111 23333444444 Q ss_pred -HHhhhhhc-ccc--ccccCH-------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCccc Q lcl|Aclame:pro 105 -GMMGQVFS-RDP--IRQLPP-------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPV 167 (535) Q Consensus 105 -~l~G~lF~-k~p--~~~~p~-------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~ 167 (535) .|.+.+|. ..| .+.+++ .++.+++.|.. ...+++.-+..+.++.+.+|.+.++||.+..+. T Consensus 70 s~l~~~ltpp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~~~-- 147 (556) T protein:vir:73 70 SGMMSGITSPARPWFKLATPDPDMMDYGPVKIWLEVVQRRMNEVFNKSNLYQSLPVMYASLGTFGTGAMAVMEDDQDV-- 147 (556) T ss_pred HHHHHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceeeeeeecCCce-- Confidence 44445543 111 112211 12333332221 235688888889999999999999998654332 Q ss_pred chHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCccc-------------ce-eeEEEEE- Q lcl|Aclame:pro 168 TVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFET-------------TY-VQQWRVL- 230 (535) Q Consensus 168 t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~-------------~~-~~~~rvl- 230 (535) ..+..|+..++ -....+...+.+ |..++..... ...|+. +. ...+.|+ T Consensus 148 -----------~r~~~~~l~~~---~~~~d~~G~vd~-i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~~v~~ 212 (556) T protein:vir:73 148 -----------IRTMPFPIGSY---YLANSPRGSVDT-CIRQFSMTVRQMVQEFGLDNVSTSVKGMWENGTYETWVEVNH 212 (556) T ss_pred -----------EEEEEeeccee---EEeeCCCCCeEE-EEEEEeccHHHHHHHcCcccCCHHHHHHHhcCCccceEEEEE Confidence 23444555444 223332223333 3222222111 012211 00 0112111 Q ss_pred --eecCCc----------eEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHH Q lcl|Aclame:pro 231 --QLNAEG----------NYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNI 298 (535) Q Consensus 231 --~l~~~g----------~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~ 298 (535) ++..++ .|. .+|..... .+..+..++|=+.+.+||+.|.-..+...+.+. |..+...-.. T Consensus 213 ~V~pr~~~~~~~~~~~~~p~~-s~~~~~~~------~~~~vl~esg~~e~P~~~~Rw~~~~ge~YGrg~-P~~~~lgD~k 284 (556) T protein:vir:73 213 CITPNVNRDSGKMDSKNKPYR-SVYFESGG------DSDKLLRESGFDEFPILAPRWEVNGEDVYASSC-PGMLALGQVK 284 (556) T ss_pred EEeccccccccccCcccceEE-EEEEEecC------CCceecccCCcccCCceeeeeeecCCcccccCc-cHHHhHHHHH Confidence 111110 011 11111100 111222233334566666666654444443332 4433322223 Q ss_pred HHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCCCC---ccceeecCcchh--HHHHHHHHH Q lcl|Aclame:pro 299 GHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQGA---TAGILQITPNSV--PFEAMTHKE 373 (535) Q Consensus 299 ~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~---~~~~~e~~~~~l--~~~~l~~~e 373 (535) .+...+-..-..++.+..|.+.+..- .....+.+.++.....+..+ ....++....++ ..+.+++++ T Consensus 285 ~L~~l~~~~l~~~~~~~~pp~~v~~~--------~~~~~~~~~pgg~~~~~~~~~~~~i~p~~~~~~d~~~~~~~i~~~~ 356 (556) T protein:vir:73 285 ALQVEQKRKAQLIDKATNPPMVAPTS--------LKNQRVSLLPGDVTYLDVISGQDGFKPAYLVNPNTADLLADIQDTR 356 (556) T ss_pred HHHHHHHHHHHHHHHHhcCceecccc--------ccccceeeccCccccccCCCCccceeeeccccccHHHHHHHHHHHH Confidence 34444444556667777776665421 12234666666554433221 234443222223 235677887 Q ss_pred HHHHHHh-h---hh-hcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCCC-Ccee-EEE Q lcl|Aclame:pro 374 SQMIAMG-A---NL-LVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGIVN-DETV-EYN 441 (535) Q Consensus 374 ~qm~~lg-a---~~-l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~~~-~~~~-~v~ 441 (535) ++|...= + .+ ...+..+.||++...........|.-+-.++. -.+++++.++.+ .|.... ++.+ .-. T Consensus 357 ~rI~~af~~d~~~~l~~~~~~r~TAtEv~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r-~g~lP~~P~~l~~~~ 435 (556) T protein:vir:73 357 QTINSAYFVDLFMMLQNINTRSMPVEAVIEMKEEKLLMLGPVLERLNDEALNPLIDRVFSIMAR-KNMLPEPPDVLQGMP 435 (556) T ss_pred HHHHHHhhcchhhhhccCCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCchhhcCce Confidence 7775421 1 12 23455668999998766544445555555543 334556666655 232111 1111 112 Q ss_pred EecccCCccCCHH---HHH---HHHHHH----hc-----CCCCHHHHHH-HHHhCCCCCccCCHHHHHHHHHhchhh--- Q lcl|Aclame:pro 442 LNTDFPAARLTPN---ERA---ELILEW----QQ-----GAITFKEMRA-GLRRAGVASEDDAKAETEGKATVEFIA--- 502 (535) Q Consensus 442 ~n~df~~~~~d~~---~~~---al~~l~----~~-----G~is~et~~~-~L~r~gvl~~~~~~eee~~~i~~e~~~--- 502 (535) ++.+|...---++ .+. .++..+ +. -.|....+.+ .....||-..-...+++.+.++++... T Consensus 436 i~v~yis~La~aqk~~~~~~i~~~~~~~~~laq~~Pe~~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~rq~r~~~qq 515 (556) T protein:vir:73 436 LRIEYISVMAQAQKSIGLTSLSQTVGFIGQLAQFKPEALDKLDVDQAIDAFSEMSGVSPTVIVPQEQVQGIREERAKQAQ 515 (556) T ss_pred eEEEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHhcCCHHHHHHHHHHHcCCChhhcCCHHHHHHHHHHHHHHHH Confidence 2233332211111 111 111111 11 1243444444 345566643333444544444322110 Q ss_pred ---cc-------cCCCcCCCCCC-CcccccccccccCCCCCC Q lcl|Aclame:pro 503 ---KT-------AAAGKVGDAAS-GGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 503 ---~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 533 (535) +. ..+....+.+. +.+..+..-++ .|.|++ T Consensus 516 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 556 (556) T protein:vir:73 516 AAQAMAMGQAAAQGAKTLSETQTSDPSALTAIANA-AGAPQQ 556 (556) T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHh-hcCCCC Confidence 00 00011111111 11112222233 344555 No 107 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=97.54 E-value=4.8e-05 Score=44.28 Aligned_cols=484 Identities=11% Similarity=0.036 Sum_probs=207.4 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~ 79 (535) |..--|||....+++ ...|---.-.+.+|+.+++.... ...|+++...|..+. T Consensus 1 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~r~~~~~~w~~~~~~~~~~~------ 54 (651) T protein:vir:80 1 MKLATTTTDKNRQTY--------------------DETHDVSSYVKKEYKRFCDARQVCEETWLEAWGMYLSTP------ 54 (651) T ss_pred Ccccccccchhhhhh--------------------hhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcccH------ Confidence 222222222222211 11222223345666666665432 345666666555431 Q ss_pred hhhHHHHHHH-----------HhhhccchhHHHHHHHHhhhhhc----cccccc------cCHH------HHHHHhccCC Q lcl|Aclame:pro 80 EEQRRRYETY-----------LQRAIFYNVTARTLDGMMGQVFS----RDPIRQ------LPPA------LEAIVEDIDG 132 (535) Q Consensus 80 ~E~~~~Y~~r-----------l~rA~~~n~~~~tv~~l~G~lF~----k~p~~~------~p~~------l~~l~~d~d~ 132 (535) +-...|.+. ...+++.|.++.+++.+...+++ .+..++ ..+. +..++.+- . T Consensus 55 -~~~~y~~~~~~~~~~~~~~~~rs~~~~~~v~~~ve~~~~~l~~~~~~~~~~~~~~p~~~~d~a~~~~~~~~~~~~~~-l 132 (651) T protein:vir:80 55 -EAQDYLRDQVLRSVGDVNADWRHKITTGKAFEAIETIHAYLMSATFPNKNWFDVVPAKPGQDNLLVSRLIKRYVQDK-L 132 (651) T ss_pred -HHHHhhccccccccCCCCCCCCccccChhHHHHHHHHHHHHHHhhcCCCceeEeccCCchhHHHHHHHHHHHHHHHH-h Confidence 111112111 12357889999999977776644 233232 1111 33344321 1 Q ss_pred CCCCHHHHHHHHHHHHHhhCcEEEEEeecCC-Cc--ccch---------------HHHHhccCCcEEEEechhhhhccee Q lcl|Aclame:pro 133 EGVSLDQQAKKALGYTMGFGRAAIFTDYPNV-GR--PVTV---------------LEQKLGLYRPTITLVHPTSIINWRT 194 (535) Q Consensus 133 ~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~-~~--~~t~---------------ad~~~~~~rPy~~~~~~~~Ii~w~~ 194 (535) .-.++......++..++.+|.+.+-|.+... .. ..+. -........|.+..++|.+++ |.- T Consensus 133 ~~~~~~~~~~~~~~d~l~~G~~i~kv~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~~-~dp 211 (651) T protein:vir:80 133 TEGKFRAAYANFLRQLLITGNSVLALPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDCF-YDP 211 (651) T ss_pred hccCcHHHHHHHHHhhcccCceEEEEeecceeeeeehheeccccccccccceeeeccceeeeceeEEEEecHHHee-ecC Confidence 2346888888999999999998886643211 00 0000 011111235777888888775 442 Q ss_pred eecCCccceeEEEEEEEEeecC--------------------------CCcccc--------------eeeEEEEEeecC Q lcl|Aclame:pro 195 KLVGGKSVISLVVIQENVLAQD--------------------------DGFETT--------------YVQQWRVLQLNA 234 (535) Q Consensus 195 ~~~~g~~~Lt~v~l~E~~~~~~--------------------------d~f~~~--------------~~~~~rvl~l~~ 234 (535) .- .+...-.++.-+ .....+ ..+... ....+.|++. T Consensus 212 ~a-~~~~d~~~v~~~-~~t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~-- 287 (651) T protein:vir:80 212 NV-TDPNRGAFIRKL-TKTKADILNLLSEGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEY-- 287 (651) T ss_pred CC-cCccccceeeee-eeeHHHHHHHHhcccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEE-- Confidence 21 122222222111 110000 000000 0011112211 Q ss_pred CceEEEEEEeeeccCCc--cccc-cceeeeccCCCc-cceeEEEEecc-CCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 235 EGNYQVERWRRETQEEM--YYSY-SKHVPTDGNGNP-FKEIPFQFIGP-LDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 235 ~g~y~v~~w~~~~~~~~--~~~~-~~~~~~~~~~~~-l~~IP~v~~~~-~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) | ..+..++.+-. .... +..+ .....++ +...||+.+.. ...+...|.++...+.+....+......+-+ T Consensus 288 ~-----~~~d~e~~~~~~~~v~~~g~~i-l~~~~~~~~~~~Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld 361 (651) T protein:vir:80 288 W-----GDIHLENKTYHDVVVTIMGNEV-LRFEQNPYWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHELNIITNQRLD 361 (651) T ss_pred E-----EEeeccCCceEEEEEEEcCcEE-ecccccCCCCCCCeeeecceecCccccCCChHHHHhHHHHHHHHHHHHHHH Confidence 0 00111110000 0000 1111 2222333 34568876543 3566778999999999999999999999999 Q ss_pred HHHHhcCceeEee-C-CCCccchhccCcceeeecCcccccCCCCCccceeecCcchh--HHHHHHHHHHHHHHH-hhhhh Q lcl|Aclame:pro 310 MAFVAGQPTAFFT-G-LTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSV--PFEAMTHKESQMIAM-GANLL 384 (535) Q Consensus 310 ~l~~~~~P~~~~~-G-~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l--~~~~l~~~e~qm~~l-ga~~l 384 (535) .+..+..|...+. + +.. +..+..+++.++......+..++++....+ ..+.++.++..|... |...+ T Consensus 362 ~~~~~~~~~~~v~~d~~~~--------~~~l~~~pg~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~gv~~~ 433 (651) T protein:vir:80 362 NLELAIDQMYTLRSDGLLQ--------PEDVYTEPGKVFLVSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFGTGNY 433 (651) T ss_pred HHHHHhCCcEEecCCcccc--------HHHhhcCCCceEEecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhcCChH Confidence 9999999997775 2 222 112444566666665555666676644332 345677776666443 33222 Q ss_pred c-----ccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCC----CCce-----------eE Q lcl|Aclame:pro 385 V-----KSGGNRTFGEAQQEEASEQSILSACTKNVSMA-----FRKALRWANQFQTGIV----NDET-----------VE 439 (535) Q Consensus 385 ~-----~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a-----~~~~lr~~a~~~g~~~----~~~~-----------~~ 439 (535) . ....+.||++.+.........|..+..++++. ++++|.++.++.-... .+.. -. T Consensus 434 ~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i~~~d 513 (651) T protein:vir:80 434 VGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYELDVED 513 (651) T ss_pred HhCCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccccccccccCccc Confidence 2 22345688887777666667788888888763 4567777776642100 0000 01 Q ss_pred EEEecccCCccC-----CHHHHHHHHHHHhcCC----CC-----HHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc Q lcl|Aclame:pro 440 YNLNTDFPAARL-----TPNERAELILEWQQGA----IT-----FKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA 505 (535) Q Consensus 440 v~~n~df~~~~~-----d~~~~~al~~l~~~G~----is-----~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~ 505 (535) ++.+-++..... ..+.+..++.+++.+. +. ...+...++..|+-+++ ......+++....+. T Consensus 514 l~~~~~iv~~g~~~~~~r~~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~~~~g~~~~~----~~l~~~~q~~~~~~~ 589 (651) T protein:vir:80 514 LQKEVRLVPIGSDHVIERKQYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLLQHWGFEEPE----AYLKQQDQQAPANPQ 589 (651) T ss_pred eeeeeeeeeccHHHHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHcCCCCcH----HhcCCCccchhhhhh Confidence 122222211111 1123344444443221 11 11222233344432211 000000000000000 Q ss_pred CCCcCCCCCCCccccccc-ccccCCC------C--------CCCC Q lcl|Aclame:pro 506 AAGKVGDAASGGTNKAKL-NNGNGGG------N--------QAGN 535 (535) Q Consensus 506 ~~~~~~~~~~~~~~~~~~-~~~~~~~------~--------~~~~ 535 (535) .+........+....+++ ....... - .+++ T Consensus 590 ~~~~~q~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (651) T protein:vir:80 590 EALLSQAKDVGGQAMSNMLQNQLQADGGTQMMSEMYGTPNADQMQ 634 (651) T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 000000000000000000 0000000 0 0000 No 108 >protein:vir:96988 Length: 516 # NCBI annotation: 29 # Family: family:all:481 # MgeID: mge:1644 # MgeName: K1-5 # Cross-refs: genbank:acc:YP_654130;genbank:gi:108862014;genbank:GeneID:5075937 Probab=97.54 E-value=4.8e-05 Score=44.26 Aligned_cols=441 Identities=10% Similarity=0.035 Sum_probs=168.5 Q ss_pred CCC-CCccCH-HHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh- Q lcl|Aclame:pro 32 LPN-VGYQRV-EFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM- 107 (535) Q Consensus 32 M~~-v~~~hp-~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~- 107 (535) |.+ .+.+.- +-......|+.+++--.- +..+++-.+-.||.. +..+. . ..+.+| .|=+...+.++.++ T Consensus 1 ~~~~~~~~~~~~~~~l~~r~~~L~~~R~~~e~~w~e~a~~~lP~~--~~~~~--~---~~~~~~-~~dstg~~a~~~LAa 72 (516) T protein:vir:96 1 MKQSIDLEYGGKRSKIPKLWEKFSNKRSSFLDRAKHYSKLTLPYL--MNDKG--D---NETSQN-GWQGVGAQATNHLAN 72 (516) T ss_pred CcchhhhhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcccc--cCCCC--C---ccccCC-cccchHHHHHHHHHH Confidence 664 211111 112334445544443322 445666666667743 21111 1 111122 33344444555444 Q ss_pred ---hhhhcc-cc--ccccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeec Q lcl|Aclame:pro 108 ---GQVFSR-DP--IRQLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYP 161 (535) Q Consensus 108 ---G~lF~k-~p--~~~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p 161 (535) +.+|.- .| .+.+.+ .++.+++.|.. ..++++.-+..+..+...+|.+.+++|.+ T Consensus 73 ~l~~~ltpp~~~WF~L~~~~~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~d~~ 152 (516) T protein:vir:96 73 KLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCMLYKPSK 152 (516) T ss_pred HHHhhhcCCCCcccccccChhHHhhccccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeEEecCC Confidence 444431 11 122222 13333333322 34578888888899999999998888732 Q ss_pred CCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCccc--------------ceee Q lcl|Aclame:pro 162 NVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFET--------------TYVQ 225 (535) Q Consensus 162 ~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~~--------------~~~~ 225 (535) . + +..|+-.+. -+..+. .+.+.-++.|+...... ..|.. ..++ T Consensus 153 ~----------------~-~~~~pl~~y-~v~~d~---~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~ 211 (516) T protein:vir:96 153 G----------------A-ISAIPMHHY-VVNRDT---NGDLLDIILLQEKALRTFDPATRAVVEVGLKGKKCKEDDSVK 211 (516) T ss_pred C----------------C-EEEEEcCeE-EEeeCC---CCCeeeehhhhHhhHHHHHHhhhhhhhhhhhhhhcCCCCceE Confidence 1 1 233443332 122221 22232244444221110 11100 1122 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCC---ccceeEEEEeccCCCcCCCCcchH----HHHHHHHH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN---PFKEIPFQFIGPLDNNADIDHPPL----LDLCEVNI 298 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~---~l~~IP~v~~~~~~~~~~~~~ppL----~dLA~ln~ 298 (535) -|-..++..++.|. |..+.++ .. ....++- .+.+||+.|.... +...|.+|- =|+..|| T Consensus 212 v~~~v~~~~~~~~~---~~~~~d~-------~~-~~~es~~~~~e~P~~~~Rw~~~~--ge~YGrgp~~~~L~D~k~L~- 277 (516) T protein:vir:96 212 LYTHAKYLGDGFWE---LKQSADD-------IP-VGKVSKIKSEKLPFIPLTWKRSY--GEDWGRPLAEDYSGDLFVIQ- 277 (516) T ss_pred EEEeeeeeCCceeE---EEEEeCc-------ee-eccccccccccCCeeeeeeeecC--CCCcccchHHHhhHHHHHHH- Confidence 22222222233221 1111111 11 1223343 3444555554333 345555564 3555554 Q ss_pred HHHhhHHHHHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecCc-chh--HHHHHHHHH Q lcl|Aclame:pro 299 GHYRNSADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITP-NSV--PFEAMTHKE 373 (535) Q Consensus 299 ~hy~~~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~-~~l--~~~~l~~~e 373 (535) ..+-.+-...+.+..|...+. |. ..+..+.-|....+.-......+.++... ..+ ..+.+++++ T Consensus 278 ---~l~~~~l~~~~~a~~~~~lv~p~g~--------~~~~~l~~~~~g~i~~g~~~~v~~~q~~~~~d~~~~~~~i~~~~ 346 (516) T protein:vir:96 278 ---FLSEAVARGAALMADIKYLIRPGAQ--------TDVDHFVNSGTGEVVTGVEEDIHIVQLGKYADLTPISAVLEVYT 346 (516) T ss_pred ---HHHHHHHHHHHHhcCCccccCcccc--------cchhhhccCCCceeecCCcccceeeecCcccchhHHHHHHHHHH Confidence 233334444455555555443 22 12223444444333222223455666543 233 346778888 Q ss_pred HHHHH--HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCceeEEEEecccCCcc Q lcl|Aclame:pro 374 SQMIA--MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-MAFRKALRWANQFQTGIVNDETVEYNLNTDFPAAR 450 (535) Q Consensus 374 ~qm~~--lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~ 450 (535) +++.. +...+...+....||++...+..-....|.-+-.++. +-+.-++..+..-++.......+.+.+-. +...- T Consensus 347 ~rI~~af~~~~l~~r~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~l~~~~p~lp~~~v~~~~vs-~l~~l 425 (516) T protein:vir:96 347 RRIGVVFMMETMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGESFTSDLVDPVIIT-GIEAL 425 (516) T ss_pred HHHHHHHhhhhhccCCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCCCccccccceeec-hHHHH Confidence 87755 2222334455568999988766544444444444433 22223333333334443333333332211 11110 Q ss_pred CCHHHHHHHHHHHh------------cCCCCHHHHHHHH-HhCCCCCccCCH-HHHHHHHHhchhhcccCCCcCCCCCCC Q lcl|Aclame:pro 451 LTPNERAELILEWQ------------QGAITFKEMRAGL-RRAGVASEDDAK-AETEGKATVEFIAKTAAAGKVGDAASG 516 (535) Q Consensus 451 ~d~~~~~al~~l~~------------~G~is~et~~~~L-~r~gvl~~~~~~-eee~~~i~~e~~~~~~~~~~~~~~~~~ 516 (535) .-++.+..+....+ .-.|....+.+.+ ...||-..-... ||.....+++...+.. ...-...++. T Consensus 426 ~r~~~~~~i~~~~~~i~~~~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~irs~eev~~~~~~~~~~q~~-~~~a~~~~~~ 504 (516) T protein:vir:96 426 GRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMAQEQEAQMQAQQA-QMLEEGVAKA 504 (516) T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHH-HHHHHHhhhh Confidence 01112222211111 0223334444433 445654333333 3333222222111100 0000000001 Q ss_pred cccccccccccC Q lcl|Aclame:pro 517 GTNKAKLNNGNG 528 (535) Q Consensus 517 ~~~~~~~~~~~~ 528 (535) -+..+++...-. T Consensus 505 ~~~~~~~~~~~~ 516 (516) T protein:vir:96 505 VPGVIQQELKEA 516 (516) T ss_pred hhHHhhcccccC Confidence 111111100000 No 109 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=97.51 E-value=5.3e-05 Score=44.01 Aligned_cols=384 Identities=12% Similarity=0.116 Sum_probs=157.7 Q ss_pred ccccCCCCCccCHH-HHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVE-FGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 28 ~~~~M~~v~~~hp~-y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) .|+| +...++.. ..-.-+.|- .....|. ...|+ . .+..+..+..+..+..+.+.+ T Consensus 1 M~~f--~~~~~~~~~~~~~~~~~~--~~~~~~~------~~~~v--------~------~~~al~~~~V~~~v~~ia~~i 56 (397) T protein:vir:38 1 MPLL--KLNKSHSQGFSLNDPDWV--NFLTGGE------AQKYV--------S------ADTALKNSDIFSLIMQLSGDL 56 (397) T ss_pred Ccch--hhhhcccCcccCCchhhh--hhhcCCc------CCcee--------c------hHHhhccHHHHHHHHHHHHHH Confidence 2222 11010000 000001121 1111110 01111 0 122344433344445555555 Q ss_pred hhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEech Q lcl|Aclame:pro 107 MGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHP 186 (535) Q Consensus 107 ~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~ 186 (535) +++.|+. + .+.+..|..+.+ ...+-.+|.+.+....+.+|.|++++.....|.+ --+..++| T Consensus 57 a~~p~~~----~-~~~~~~l~~~PN-~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~------------~~l~~l~~ 118 (397) T protein:vir:38 57 AMVRYTS----E-SDRSQSIISNPS-VTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVD------------LSWEYLRP 118 (397) T ss_pred hhCcccc----c-ccHHHHHHhcCC-CCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcE------------EEEEEEcC Confidence 5555532 2 223445655554 3578899999999999999999999987655432 14556666 Q ss_pred hhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCC Q lcl|Aclame:pro 187 TSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN 266 (535) Q Consensus 187 ~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 266 (535) ..|- +...+++ ... . |++.. ....... ....+ T Consensus 119 ~~v~---------------------i~~~~~~--~~~--~-----------y~~~~---~~~~~~~---~~~~~------ 150 (397) T protein:vir:38 119 SQVQ---------------------PMLLQDG--SGL--I-----------YNINF---DEPAIGY---MENVP------ 150 (397) T ss_pred ceeE---------------------EEEcCCC--ceE--E-----------EEEEe---ccccccc---eeEec------ Confidence 6541 0011111 000 0 11100 0000000 00000 Q ss_pred ccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCCccchhccC---c-ceeee Q lcl|Aclame:pro 267 PFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTKDWVEDVFK---D-FKVHL 340 (535) Q Consensus 267 ~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~~~~~d~~~---~-~~i~i 340 (535) +-. ++++ +....+...|.||+..+.. .+.......++.... ...+.|..+++--.....++... . +...- T Consensus 151 ~~e---iih~~~~~~~~~~~G~s~i~~~~~-~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~~~~~~~~~~~~ 226 (397) T protein:vir:38 151 AAD---VIHIRLLSKNGGKTGISPLSALIN-EQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAETRIARSKEISKQ 226 (397) T ss_pred Ccc---EEEecCCCCCCccccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhc Confidence 001 1222 2222334467888866543 445545555554443 44577887777322111111000 0 00111 Q ss_pred c--CcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH---hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 341 G--SRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM---GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNV 414 (535) Q Consensus 341 G--~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l---ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~ 414 (535) | +..++.++.+.++.-+..++.... .+..+....+++++ ...++.......+..+. .... -...|.-++..+ T Consensus 227 ~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~~~~~e~-~~~~-~~~~l~P~~~~i 304 (397) T protein:vir:38 227 IHNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQQSSITQ-ISGQ-YAKSLNRYVQAI 304 (397) T ss_pred ccccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHH-HHHH-HHHHHHHHHHHH Confidence 1 223455666655554544444433 23444444555442 23334322221111111 1111 123566666666 Q ss_pred HHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHH Q lcl|Aclame:pro 415 SMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEG 494 (535) Q Consensus 415 ~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~ 494 (535) ++++++.|- . ..++ +.+|.......+.++++-++++.|.++...+++.|-.-.+...+ ... T Consensus 305 e~~ln~~l~------~------~~~~--~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d-~~~---- 365 (397) T protein:vir:38 305 VGELNDKLH------A------NISA--NIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKD-LPD---- 365 (397) T ss_pred HHHHHHhcc------C------hhcc--cccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCc-ccc---- Confidence 666654321 1 0112 22333333334566777789999999999888766443332221 110 Q ss_pred HHHhchhhcccCCCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 495 KATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 495 ~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) .+. ............+++++.+..+-.++.|. T Consensus 366 ---~~~---~~~~~~~~~~~~~g~~~~~~~~e~~~~~~ 397 (397) T protein:vir:38 366 ---PEK---EPQQAIQLIQQEGGENDGNNSDERGSDPE 397 (397) T ss_pred ---ccc---cccccccccccccCCCCCCCCCCCCCCCC Confidence 000 01111111122233333333333444444 No 110 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=97.49 E-value=5.7e-05 Score=43.85 Aligned_cols=470 Identities=13% Similarity=0.018 Sum_probs=172.9 Q ss_pred CCcchh----------hhhhhhhcce--ecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhc----ChHHHHH Q lcl|Aclame:pro 1 MARKRT----------TIRRDVQSKV--LIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLS----GQEAIKA 64 (535) Q Consensus 1 ~~~~~~----------~~~~~~~~~~--~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~----G~~~~~~ 64 (535) |++.+. .+-|-+++-- -++-.++++.=+|-+++-.+...|.-.. .=.++.|-+. +...-++ T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~---~~~~~~Dgl~n~~~~lG~~~~ 115 (862) T protein:vir:99 39 LARTRQNWPVQKEKPNPIIRSVKDFPFVEISDSVNAKSVSGKNFAMDSAVRSAIKA---ITGFAMDDGGGAPVPIGAEGK 115 (862) T ss_pred HHhhcccCCcccccCCCCCCcccccccccccccccchhhhhhhhcchhhcchhhhh---hhhhhhhcchhhhhhcccccc Confidence 332221 1111111100 0111223333233333311222222111 1122333222 1111111 Q ss_pred HHhhhCCCCCCCCCChhhHHHH---HHHHhhhccchhHHHHHHHHhhhhhccccccccC--------HH---HHHHHhcc Q lcl|Aclame:pro 65 KREEYLPMPSVDSRDEEQRRRY---ETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP--------PA---LEAIVEDI 130 (535) Q Consensus 65 ~g~~YLP~~~~~~~~~E~~~~Y---~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p--------~~---l~~l~~d~ 130 (535) +..-++++.-...+..-.-..| ..|.. ...++.+|+..+.-+.|+.+.+... +. ++..++. T Consensus 116 ~s~y~~~~~~~~~~~~~~f~gyql~alY~~----~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~r- 190 (862) T protein:vir:99 116 QSSYAVPEALQDWYLSQGFIGHQACALIAQ----HWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDVE- 190 (862) T ss_pred ccccccchhccccccccCcccHHHHHHHHh----CchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHHH- Confidence 1111122110000000000112 22322 4567888888888888999888632 22 3333333 Q ss_pred CCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCc-----ccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeE Q lcl|Aclame:pro 131 DGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGR-----PVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISL 205 (535) Q Consensus 131 d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~-----~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~ 205 (535) ..+..-++.+.+.+-.+|+.++|+.-...+. +... +-...+..=+|..++|..+-.+. T Consensus 191 ----L~v~~~l~eair~~RLyGga~ililv~~~D~~~LsqPLn~-e~I~kG~lkgl~vlDp~w~~p~~------------ 253 (862) T protein:vir:99 191 ----FKVKENLIEFNRFKNVFGIRVAIFVVDSEDPDYYEKPFNP-DGITPGSYRGISQIDPYWMMPML------------ 253 (862) T ss_pred ----hhHHHHHHHHHHhcccccceEEEEEecCcCchhhhcCcCc-ccccccceeEEEEechhhhcccc------------ Confidence 2466667777777777888777654221111 1000 00000000123333332221000 Q ss_pred EEEEEEEeecC-CCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCC Q lcl|Aclame:pro 206 VVIQENVLAQD-DGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNAD 284 (535) Q Consensus 206 v~l~E~~~~~~-d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~ 284 (535) ..+...++. ..|+... .|...+.. ....-+. ...+.+ ||-.. . ..-.. T Consensus 254 --v~~~~~Dp~sp~yGkP~------------------~y~I~g~~----IH~SRli-if~g~~---vpd~l-k--~ay~f 302 (862) T protein:vir:99 254 --TAESTADPSSQFFYEPE------------------FWIISGQK----YHRSHLI-IARGPQ---PADIL-K--PTYIF 302 (862) T ss_pred --cccccccccccccCCce------------------eeeecCee----eccceeE-EecCCC---chhhh-h--ccCCc Confidence 001111111 2233221 12111000 0000000 001111 11110 0 11113 Q ss_pred CCcchHHHHHHHHHHHH-hhHHHHHHHHHHhcCceeEeeCCCCccchhccCc--ceee--ecCcccccCCCCCccceeec Q lcl|Aclame:pro 285 IDHPPLLDLCEVNIGHY-RNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKD--FKVH--LGSRAIIPLPQGATAGILQI 359 (535) Q Consensus 285 ~~~ppL~dLA~ln~~hy-~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~--~~i~--iG~~~~~~lp~~~~~~~~e~ 359 (535) .|.|.|.-+-+ -+..| +...--..+++-..+..+-+.++..-..++.... ..+. -+...++.++.+.++..+.. T Consensus 303 ~G~SvLe~iyd-~L~~~d~t~~saa~Ll~ka~l~v~ktd~l~~l~~ed~l~~r~~~~~~~rdN~Gi~liD~eEe~e~ls~ 381 (862) T protein:vir:99 303 GGIPLVQRIYE-RVYAAERTANEAPLLAMNKRTTAIHTDTAKAIANEDKFIQRLMFWVRYRDNHAVKVLGTDETMEQFDT 381 (862) T ss_pred cCccHHHHHHH-HHHHHHHHHHHHHHHHHHhccceeechhHhhhccHHHHHHHHHHHHhccCcceeEEecCCCceeEEec Confidence 46665543322 33333 3333334556666677666666543211111110 0111 13334566676667777776 Q ss_pred CcchhHHHHHHHHHHHHHHHhhhh---hccc--ccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCC Q lcl|Aclame:pro 360 TPNSVPFEAMTHKESQMIAMGANL---LVKS--GGNRTFGEAQQEEASEQSILSACT-KNVSMAFRKALRWANQFQTGIV 433 (535) Q Consensus 360 ~~~~l~~~~l~~~e~qm~~lga~~---l~~~--~~~~ta~~a~~~~~~~~S~L~~~a-~~~~~a~~~~lr~~a~~~g~~~ 433 (535) +-+++. ..+....++|+...... |... +|-.++++. +...=+..+.++. ..+...+++++.++..-+|. T Consensus 382 slSGL~-dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~--D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg~-- 456 (862) T protein:vir:99 382 SLADFD-AVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEF--ETISYHEELESIQEHVYMPFLQRHYLISRLSLGI-- 456 (862) T ss_pred ccCChH-HHHHHHHHHHHhhhCCCceeecccCcccccCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-- Confidence 666653 44555555555433222 2211 122111111 2222234455554 35778888888877554442 Q ss_pred CCceeEEEEecccCCccCCHHHH-------HHHHHHHhcCCCCHHHHHHHHHhCCCCC-ccCCHHHH----------HHH Q lcl|Aclame:pro 434 NDETVEYNLNTDFPAARLTPNER-------AELILEWQQGAITFKEMRAGLRRAGVAS-EDDAKAET----------EGK 495 (535) Q Consensus 434 ~~~~~~v~~n~df~~~~~d~~~~-------~al~~l~~~G~is~et~~~~L~r~gvl~-~~~~~eee----------~~~ 495 (535) +.+ +++.+.......+.+.+ ++...++++|.|+-++.+++|+..+... ...+.++. .+. T Consensus 457 -~~d--~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~ 533 (862) T protein:vir:99 457 -QHE--IDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAA 533 (862) T ss_pred -CCc--ceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccc Confidence 223 44444444444333332 4566788999999999999998755421 11111111 111 Q ss_pred HHhchhhcccCC------CcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 496 ATVEFIAKTAAA------GKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 496 i~~e~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ++.......... +.......+.....+....+.++.+.++ T Consensus 534 ~e~~g~a~~~ap~de~~aga~~~~~e~d~~~~p~~~~~~~g~~~~~ 579 (862) T protein:vir:99 534 YQKAGAAQETASAKETQAGAAVTTAEGDQPNVQMVPSMKPGQMVGP 579 (862) T ss_pred cccCCcccccccccccccccCCccccCCcccccccCCCCCCCcccc Confidence 111000000000 0000001111111222221112222222 No 111 >protein:vir:105619 Length: 772 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:1540 # MgeName: F116 # Cross-refs: genbank:acc:YP_164304;genbank:gi:56692922;genbank:GeneID:3197230 Probab=97.47 E-value=6e-05 Score=43.71 Aligned_cols=480 Identities=12% Similarity=0.047 Sum_probs=183.9 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhh---hCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREE---YLPMPSVDS 77 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~---YLP~~~~~~ 77 (535) |- -| -.|-|+--..|| .+. + ..|.+ .|..+.....+...+|+...+ |. .+.. T Consensus 1 ~~--~~--~~~~~~~~~~~~----------~~~-~-~~~~~------~~~~~~~~~~~q~~~r~~a~~d~~fy---~G~Q 55 (772) T protein:vir:10 1 MQ--IT--ENDRQYLNGLPP----------AGD-T-PLTVD------EYADINYEIEDQPAWRAVADKEMDYA---DGNQ 55 (772) T ss_pred CC--cc--hhhHHhhccCCc----------ccc-c-ccCHH------HHHHHHHHHhccHHHHHHHHHHHHhh---cCCC Confidence 10 00 011111111111 111 1 11222 355555556667777664444 43 3333 Q ss_pred CChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcccccccc-CH----------HHHHHHhccCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 78 RDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQL-PP----------ALEAIVEDIDGEGVSLDQQAKKALG 146 (535) Q Consensus 78 ~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~-p~----------~l~~l~~d~d~~G~~L~~~~~~~~~ 146 (535) -+.+-.+..+.+-...+.+|.++.+|+..+|.--++.+.+.+ |. .|..+++.+- +-++.+.-+..+|. T Consensus 56 W~~~~~~~l~~~g~p~~~~N~i~~~v~~v~g~~~~nr~d~~v~Pr~~~~d~~~Ae~l~~~~~~~~-~~~~~~~~~s~Af~ 134 (772) T protein:vir:10 56 LDTELLRRQQALGIPPAVEDLIGPALLSLQGYEAVTRTDWRVTPNGDVGGQEVADALNYRLNTAE-RQSGADRACSEAFR 134 (772) T ss_pred CCHHHHHHHHhcCCCcEEEcchHHHHHHHHHHHHhcCcceEEecCCCchHHHHHHHHHHHHHHHH-HhcChHHHHHHHHH Confidence 444444555666666777999999999999999877776642 31 1222222211 12567777899999 Q ss_pred HHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhh-cceeee--cCCccce-------------------- Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSII-NWRTKL--VGGKSVI-------------------- 203 (535) Q Consensus 147 ~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii-~w~~~~--~~g~~~L-------------------- 203 (535) .++.+|..|+=|++..... +-..++..++|.+|+ +|.... .+.+..+ T Consensus 135 ~~i~~G~Gw~e~~~~~d~~----------~~~i~i~~v~p~~v~~Dp~a~~D~sDar~~~~~~~~~~d~~~~~fp~~a~~ 204 (772) T protein:vir:10 135 PQIACGIGWVEVSRESDPF----------KFPYRCRPIRRDEIHWDMKCGDDWEACRFLRRQRWLSPDRIALVFPEHAEL 204 (772) T ss_pred HhhhcCceeEEeccccCCC----------CCCeEEEeeCcccceecCCCCCCHHHhhhhhhhccCCHHHHHHhCCCchhH Confidence 9999999988776542211 011344444444432 111110 0000000 Q ss_pred ---------eEEEEEE--------------------EEeecCCCcccceeeEEEEEeec------------CCceEEEEE Q lcl|Aclame:pro 204 ---------SLVVIQE--------------------NVLAQDDGFETTYVQQWRVLQLN------------AEGNYQVER 242 (535) Q Consensus 204 ---------t~v~l~E--------------------~~~~~~d~f~~~~~~~~rvl~l~------------~~g~y~v~~ 242 (535) +|....+ ......+.|......++||.+.. .+|. +.. T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rVrv~E~w~r~~~~~~~~~~~~g~--~~~ 282 (772) T protein:vir:10 205 IGMVGKYGSTWWGQPDLGMMEGGTSTGLHNAWNEARAWTVQEDHWYNPTSKEICLVELWYRRWVQVHVLKSPDGR--VVE 282 (772) T ss_pred HHhhhhhcccccCcccccccccccccccccccchhhccccccccccccCCceEEEEEEeeeeeeeeeeeccCCCc--eEe Confidence 0000000 00000112222223444444321 0000 000 Q ss_pred Eeeecc-------------------CC-ccccccceeeeccCC--CccceeEEEEeccC-CCcCCCCcchHHHHHHHHHH Q lcl|Aclame:pro 243 WRRETQ-------------------EE-MYYSYSKHVPTDGNG--NPFKEIPFQFIGPL-DNNADIDHPPLLDLCEVNIG 299 (535) Q Consensus 243 w~~~~~-------------------~~-~~~~~~~~~~~~~~~--~~l~~IP~v~~~~~-~~~~~~~~ppL~dLA~ln~~ 299 (535) +..... .- ...-.+..+ ...+. -+-+.+|||++... ........--+.++.+.+.. T Consensus 283 ~~~~~~~~~~~l~~g~~~~~~~~~~rv~~~~~~g~~~-L~~~~~p~~~~~fP~vP~~g~r~~~~g~~~G~vr~~kd~Qr~ 361 (772) T protein:vir:10 283 YDPNNLAHNIALASGRISPKKVTVSRVRRSYWLGPHC-LHDGPTPYTHRHFPYVPFFGFREDATGIPYGYVRGMKYAQDS 361 (772) T ss_pred eCcccHHHHHHHhhcccchheeeeeEEEEEEEeccee-eccCCCCCCCCccceEEEeeeEeccCCcccchhhhhhhHHHH Confidence 000000 00 000001111 11122 24446777755322 11111122346788899999 Q ss_pred HHhhHHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCC------CCccceeecCc-chhHHHHHHHH Q lcl|Aclame:pro 300 HYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQ------GATAGILQITP-NSVPFEAMTHK 372 (535) Q Consensus 300 hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~------~~~~~~~e~~~-~~l~~~~l~~~ 372 (535) ++...|-+.+++...+ +..-.|.-+..+....+. +.- +.+++.+.+ +.++.+.+... .....+.|+.. T Consensus 362 ~N~~~S~~~~~l~~~~--~~~~~gav~~~d~~~~e~--~ar-p~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~ 436 (772) T protein:vir:10 362 LNSGVSKLRWGMSVAR--VERTKGAVAMTDAQFRRQ--IAR-PDADIVLDENHMAKPGARFDVKRDYTLTDQHFQMLQDN 436 (772) T ss_pred HHHHHHHHHHHHhccc--ccccCCCccchhHHHHHh--ccC-CCCeEEeCCccccCCCCCccccCCccccHHHHHHHHHH Confidence 9998988888876443 333344333221111000 110 122333322 23343322221 11123455555 Q ss_pred HHHHHHHh-h--hhhcccccccchHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCC-----C--CCc- Q lcl|Aclame:pro 373 ESQMIAMG-A--NLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMA----FRKALRWANQFQTGI-----V--NDE- 436 (535) Q Consensus 373 e~qm~~lg-a--~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a----~~~~lr~~a~~~g~~-----~--~~~- 436 (535) .+.|..++ . .++.. .++.+++.+ ..+..+..-.|..+-.|+..+ -+.+|.++..|+... . ++. T Consensus 437 ~~~i~~vsGv~~~~lG~-~~na~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~y~~er~~RI~~~d~~~ 515 (772) T protein:vir:10 437 RATIERVSNITAGFQGR-KGTATSGIQEQQQIEQSNQSIGRIMDNFRAGRTLVGELLLAMIVEDIGQERTEVVIEGDAVT 515 (772) T ss_pred HHHHHHHhCCCHHHcCC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCC Confidence 55555543 2 22333 334455544 222223233445555555544 456777888888532 0 100 Q ss_pred -eeEEEEec--------------ccCCcc-------------CCHHHHHHHHHHHhcCCCCHHHHH---HHHHhCCCCCc Q lcl|Aclame:pro 437 -TVEYNLNT--------------DFPAAR-------------LTPNERAELILEWQQGAITFKEMR---AGLRRAGVASE 485 (535) Q Consensus 437 -~~~v~~n~--------------df~~~~-------------~d~~~~~al~~l~~~G~is~et~~---~~L~r~gvl~~ 485 (535) .-.+.+|. |..... ...+.+.+++++... ++-+..- ..+-.. . + T Consensus 516 ~~~~v~in~~~~d~~tg~~~~~NDi~~g~yDv~i~~~p~~~t~r~~~~~~m~ql~~~--~~P~~~~~~~~~~le~--~-D 590 (772) T protein:vir:10 516 ADRVVVLNEPQRDPQTGAAYLSNDLLRTRIKVALEDVPSTNSYRGQQLNAMSEAVKS--MPPQYQAAVLPFLVSL--M-D 590 (772) T ss_pred CCceEEeccceecccccccceeccceeeeEEEEeeccccchHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHhh--c-C Confidence 01122221 111111 123445556666543 2322111 111110 1 1 Q ss_pred cCCHHHHHHHHHhchhhcccCCCcCCCCCCCccc-c----ccccc-cc---------CCCCCCCC Q lcl|Aclame:pro 486 DDAKAETEGKATVEFIAKTAAAGKVGDAASGGTN-K----AKLNN-GN---------GGGNQAGN 535 (535) Q Consensus 486 ~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~-~----~~~~~-~~---------~~~~~~~~ 535 (535) .-..+|...++..-.... .+......-.. . ++... -. -....+.+ T Consensus 591 ~p~~~ei~~~ir~~~~~~-----~peq~~~~~~q~~qq~~~~~~~el~~~q~~a~~~~~~A~a~~ 650 (772) T protein:vir:10 591 VPFKRDVVEAIRAVDQQQ-----TPEQIQQQIDQAVQDALAKAGNDIKLRELEIKERKADSEISG 650 (772) T ss_pred CCChHHHHHHHHHHhccC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 112345555554321000 00000000000 0 00000 00 00000000 No 112 >protein:vir:100039 Length: 522 # NCBI annotation: T7-like head-to-tail connector # Family: family:all:481 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214201;genbank:gi:61806424;genbank:GeneID:3294719 Probab=97.46 E-value=6.3e-05 Score=43.63 Aligned_cols=442 Identities=12% Similarity=0.076 Sum_probs=175.8 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCC-ChhhHHHHHHHHhhhccchhHHHHHHH----H Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSR-DEEQRRRYETYLQRAIFYNVTARTLDG----M 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~-~~E~~~~Y~~rl~rA~~~n~~~~tv~~----l 106 (535) |. ... .|. .++--|.-+ ...+++-.+-.||..-.... ...... +..+ .|-+.-.+.++. | T Consensus 1 m~-~~~---r~~----~L~~~R~~~--e~~w~e~~~~tlP~~~~~~~~~~~~~~----~~~~-~~dstg~~a~~~LAa~l 65 (522) T protein:vir:10 1 MK-ARE---RYN----QLTTARQMF--LDKAVECSELTLPYLIDDDISSRPNHK----SLTV-PWQSVGAKCCVTLAAKL 65 (522) T ss_pred Cc-hHH---HHH----HHHHHhhHH--HHHHHHHHHHhhhcccCCCCCCCcccc----cccc-cccchHHHHHHHHHHHH Confidence 54 111 111 111112222 33344444555664322211 111111 1111 333444444444 4 Q ss_pred hhhhhc--ccc-ccccCH-------------HHHHHHhccC------CCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC Q lcl|Aclame:pro 107 MGQVFS--RDP-IRQLPP-------------ALEAIVEDID------GEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG 164 (535) Q Consensus 107 ~G~lF~--k~p-~~~~p~-------------~l~~l~~d~d------~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~ 164 (535) .+.+|. +++ .+.+++ .++.+++.|. ...++++.-+..++.+...+|.+.+++|.+. T Consensus 66 ~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~~~~-- 143 (522) T protein:vir:10 66 MLAVLPPQTSFFKLQVRDDKLGEELDPQIRSELDLSFSKMERMIMDYIAASNDRVAVHQALKHLIVGGNALIFMGKDG-- 143 (522) T ss_pred HHhhcCCCCccccccCChHHHhhhcChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCceeEEEcCCC-- Confidence 444443 111 112211 1333443333 2356788888999999999999999987431 Q ss_pred cccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccc--------------eeeEEE Q lcl|Aclame:pro 165 RPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETT--------------YVQQWR 228 (535) Q Consensus 165 ~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~--------------~~~~~r 228 (535) +..|+-.+ +-.... +.+.+.-|+.++.+... ..+|+.. .++-|- T Consensus 144 ----------------~~~~pl~~---y~v~~d-~~G~vd~i~r~~~~t~~ql~~~fg~~~~~~~~~~~~~~~~~v~v~~ 203 (522) T protein:vir:10 144 ----------------LKTFPLTR---YVINRD-GDGNVLEIVTKELISRKVLDIELPEPKPNTGIDESSTTNDDVTIYT 203 (522) T ss_pred ----------------ceEEEcce---EEEeeC-CCCCeeEEEeeeeccHHHHHHhcchhccchhhhcccCCCCceEEEE Confidence 22333333 222222 23344445555544311 1223321 122222 Q ss_pred EEeecCC-ceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 229 VLQLNAE-GNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLLDLCEVNIGHYRNSAD 306 (535) Q Consensus 229 vl~l~~~-g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~dLA~ln~~hy~~~sd 306 (535) +..+..+ +.| .|..+..+.. .....+..++...||++... ...+...|.+|..+...-...+...+-. T Consensus 204 ~v~p~~~~~~~---~~~~~~~~~~-------~~~~~s~~g~~~~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~ 273 (522) T protein:vir:10 204 YVKLDKSSGRW---VWHQEAFDKI-------IPDSRSTAPKNASPWLPLRFNTVDGEDYGRGRVEEFLGDLKSLDGLSQS 273 (522) T ss_pred EEEeeccCCce---EEEEccCCcc-------ccccccccccccCCceeeeeeecCCCccccchHHHHHHHHHHHHHHHHH Confidence 2222211 111 1221111111 11111122444445544322 2234456777766544444444445555 Q ss_pred HHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecC-cchh--HHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 307 YEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQIT-PNSV--PFEAMTHKESQMIAMGA 381 (535) Q Consensus 307 l~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~l~~~e~qm~~lga 381 (535) +-...+.+..|...+. |... ...+.-|....+.-...++...++.. +..+ ..+.++++++++...=. T Consensus 274 ~~~~~~~a~~p~~lv~~~~~~~--------~~~l~~~~~~~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ri~~aFl 345 (522) T protein:vir:10 274 LIEGAAAASKVVFLVSPSSTTK--------PATIAKAGNGAIVQGRPEDVAVIQVGKTADFSTAANMATAIEKRLLEAFL 345 (522) T ss_pred HHHHHHHhcCCceeeccccccc--------cccccCCCCcceecCCCccceeecccccccchHHHHHHHHHHHHHHHHHh Confidence 5566677777776653 2221 11232333333333333445555543 2333 24667888888766432 Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCCC-Ccee-EEEEecccCCccCCHH Q lcl|Aclame:pro 382 NLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGIVN-DETV-EYNLNTDFPAARLTPN 454 (535) Q Consensus 382 ~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~~~-~~~~-~v~~n~df~~~~~d~~ 454 (535) .+...+....||++...+..-....|.-+-.++. -.+++++.++.+ .|.... +.+. ... ...|...-.-+| T Consensus 346 ~~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r-~g~lP~~p~~~~~~~-~v~~is~Laraq 423 (522) T protein:vir:10 346 VMNVRNAERVTAEEVRLTQLELEQQLGGIFSLLVIEFLIPYLNRTLLVLQR-SNQIPKLPKDIVRPT-IVAGVNALGRGQ 423 (522) T ss_pred hccCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCccccccc-cccchhHHHHHH Confidence 3334556678999998776555555555444443 234556665554 332111 1111 111 112332211233 Q ss_pred HHHHHHHHHhc-----------CCCCHHHHHHHH-HhCCCCCcc-CCHHHHHHHHHhchhh------cccCCCcCCCC-- Q lcl|Aclame:pro 455 ERAELILEWQQ-----------GAITFKEMRAGL-RRAGVASED-DAKAETEGKATVEFIA------KTAAAGKVGDA-- 513 (535) Q Consensus 455 ~~~al~~l~~~-----------G~is~et~~~~L-~r~gvl~~~-~~~eee~~~i~~e~~~------~~~~~~~~~~~-- 513 (535) .++.++...+. ..|..+.+.+.+ ...||-.+. ...+|+...++++... ....+++.+++ T Consensus 424 ~~~~l~~~~~~i~~~~~p~~~~~~id~d~~~~~~a~~~Gvp~~~ivrt~eev~~~~q~~q~~~~~~~~~~~a~~~~~~~~ 503 (522) T protein:vir:10 424 DRESLTAFVGTIAQTLGPEALMQYLNPLEAIKRLAAAQGIDVLNLVKTEQQLAEEQQAAQQQAAQQSLVDQAGQMTGSPL 503 (522) T ss_pred HHHHHHHHHHHHHHhhCchhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc Confidence 33333222111 124334444444 345652122 2223332222221110 11111111110 Q ss_pred --CCCcccccccccccCCC Q lcl|Aclame:pro 514 --ASGGTNKAKLNNGNGGG 530 (535) Q Consensus 514 --~~~~~~~~~~~~~~~~~ 530 (535) .+...+..++.+..|-. T Consensus 504 ~~~~~~~~~~~~~~~~~~~ 522 (522) T protein:vir:10 504 MDPTKNPQLMDEEQPPMEE 522 (522) T ss_pred cCccccHHHHHHhCCCCCC Confidence 01111111122111111 No 113 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=97.41 E-value=7.2e-05 Score=43.28 Aligned_cols=450 Identities=10% Similarity=0.020 Sum_probs=173.5 Q ss_pred CCcchhh-----hhhhhhcceecCCCCCCCC-cccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCC Q lcl|Aclame:pro 1 MARKRTT-----IRRDVQSKVLIPPQAPPTS-GLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPS 74 (535) Q Consensus 1 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~ 74 (535) |-.||.| ..| +-++=.+-.+|++. ++--.|. ++. -+ |+..-++.+..| +-.. T Consensus 23 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a-~~~-----------------g~-~~~~~~~~~~~~-~~~~ 80 (532) T protein:vir:94 23 VDAKRATHTSLGLAT--AHEIDPTAYSPYERNAAQNAMA-MDY-----------------GL-QTGRNGRNALSF-VEAT 80 (532) T ss_pred hhhhhhhhhhhhhhh--hhhhcccccccccccccccccc-ccc-----------------cc-Cccccccccccc-cccc Confidence 3333333 111 11111111122210 1100010 000 00 111112221122 1111 Q ss_pred CCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcccccccc-------CHH---HHHHHhccCCCCCCHHHHHHHH Q lcl|Aclame:pro 75 VDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQL-------PPA---LEAIVEDIDGEGVSLDQQAKKA 144 (535) Q Consensus 75 ~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~-------p~~---l~~l~~d~d~~G~~L~~~~~~~ 144 (535) .+. . .+.+..|. ....++.+|+..+.-++++.+.+.. ++. ++..++. ..+.+-+..+ T Consensus 81 ~~~--~--~~l~a~Y~----~~~l~r~~Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~-----l~v~~~l~~a 147 (532) T protein:vir:94 81 SWP--G--FPTLALLA----QLPEYRTMHETPADECVRAWGKITCSSKDELAADKATRITQKLEQ-----YNVRTLVRTV 147 (532) T ss_pred ccc--h--HHHHHHHH----cCchhhhhhccchHHHhhCCceEeeCCccccchHHHHHHHHHHHh-----hhHHHHHHHH Confidence 111 0 01122222 2456688899999999999998843 122 2333333 3577888889 Q ss_pred HHHHHhhCcEEEEEeecCCCcccc------h-HHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEE-eec- Q lcl|Aclame:pro 145 LGYTMGFGRAAIFTDYPNVGRPVT------V-LEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENV-LAQ- 215 (535) Q Consensus 145 ~~~~l~~G~~~vlVD~p~~~~~~t------~-ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~-~~~- 215 (535) .+.+..+|.+++++.-...+...- + -+....|..-++..++|.+| .-.+.. .++ T Consensus 148 ~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g~~~~l~vld~~~v-----------------~p~~~~~~dp~ 210 (532) T protein:vir:94 148 VIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRGCLIGFATIEPMWL-----------------SPNAYNATDPT 210 (532) T ss_pred HHhhhcccceEEEEEeccCCccccccccccccccccccceeeEEEeechhee-----------------ccccccccccc Confidence 999999999998886532221000 0 00000001112222222111 000000 000 Q ss_pred CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHH Q lcl|Aclame:pro 216 DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCE 295 (535) Q Consensus 216 ~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ 295 (535) ...|+.- ..|......... ...+. .-.++++..++. ......|.|-|..+-+ T Consensus 211 sp~fg~P------------------~~y~v~~g~~iH---~SRli-~f~g~~~p~~~~------~~~~~~G~Svlq~~~~ 262 (532) T protein:vir:94 211 LPSFYKP------------------DSWIATSGKKIH---SSRIH-TVVGRPVGDMLK------AAYSFRGVSISQLAMP 262 (532) T ss_pred ccccCCc------------------eeEEEccCeeec---cceEE-EecCCCchhhhc------cccccccccHHHHHHH Confidence 0122211 112111000000 00000 011222222211 1112245665544433 Q ss_pred HHHHHHhhHHHHHHHHHHhcCceeEeeCCCCcc---chhccCc--ceee--ecCcccccCCC-CCccceeecCcchhHHH Q lcl|Aclame:pro 296 VNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDW---VEDVFKD--FKVH--LGSRAIIPLPQ-GATAGILQITPNSVPFE 367 (535) Q Consensus 296 ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~---~~d~~~~--~~i~--iG~~~~~~lp~-~~~~~~~e~~~~~l~~~ 367 (535) --...-+...--..+++...+..... ++.... ....... ..+. -+...++.++. +.++..+...-+++ .. T Consensus 263 ~l~~~~~t~~~~~~l~~~~~~~v~k~-~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~~~lsgl-~~ 340 (532) T protein:vir:94 263 YVDNWLRTRQSVSDTVKQFSMTNLAT-DMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQTNTPLSGL-DS 340 (532) T ss_pred HHHHHHHHHHHHHHHHHhcCCceeee-chHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCceeEEEecccCCH-HH Confidence 22222233333345566666666544 432211 1111000 0011 23445566664 34566555554554 34 Q ss_pred HHHHHHHHHHHHhhhhhcccccccchHH-H--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCceeEEEEe Q lcl|Aclame:pro 368 AMTHKESQMIAMGANLLVKSGGNRTFGE-A--QQEEASEQSILSACTKN-VSMAFRKALRWANQFQTGIVNDETVEYNLN 443 (535) Q Consensus 368 ~l~~~e~qm~~lga~~l~~~~~~~ta~~-a--~~~~~~~~S~L~~~a~~-~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n 443 (535) .++...++|+....-.+..=.+..+++- + ..+...=+..+.++..+ +...++++++++.+=.....++ ++.|. T Consensus 341 ~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~~~~-d~~~~-- 417 (532) T protein:vir:94 341 LQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQIDP-GLAWE-- 417 (532) T ss_pred HHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CceEE-- Confidence 5555556665433222221112222211 1 11233335556666644 5777888888775433222222 34444 Q ss_pred cccCCccCCHHH-------HHHHHHHHhcCCCCHHHHHHHHHhCCCC------CccC---CHHHHHHHHHhchhhcccCC Q lcl|Aclame:pro 444 TDFPAARLTPNE-------RAELILEWQQGAITFKEMRAGLRRAGVA------SEDD---AKAETEGKATVEFIAKTAAA 507 (535) Q Consensus 444 ~df~~~~~d~~~-------~~al~~l~~~G~is~et~~~~L~r~gvl------~~~~---~~eee~~~i~~e~~~~~~~~ 507 (535) +.......+.+. +++...++++|.|+.+.+++.|...... .... ..+++..+...+..+.+..+ T Consensus 418 f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (532) T protein:vir:94 418 WSPLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPATA 497 (532) T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCCC Confidence 333333322222 3456678999999999999988754321 1111 11222223333333333332 Q ss_pred CcCCCC-CCCccccccccccc-----CCCCCCCC Q lcl|Aclame:pro 508 GKVGDA-ASGGTNKAKLNNGN-----GGGNQAGN 535 (535) Q Consensus 508 ~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~ 535 (535) +....+ ..+..+.++-.+.. -+.-+-|| T Consensus 498 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 531 (532) T protein:vir:94 498 PQTPNPQPDSEDDQTDNQPDAQADPAQNDQPVGN 531 (532) T ss_pred CCCCCCCCCCCCCCCCCccCCCccccccCCCcCC Confidence 222222 12222222222222 22334456 No 114 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=97.40 E-value=7.5e-05 Score=43.19 Aligned_cols=457 Identities=9% Similarity=0.001 Sum_probs=175.5 Q ss_pred CCcchhhhhhh---hhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH-hhhCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRD---VQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR-EEYLPMPSVD 76 (535) Q Consensus 1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g-~~YLP~~~~~ 76 (535) |.|-..-.-.. .++.+.-+--.+|.-+..+.|-.+.-.+ ..+.+. +-+--.|..++.... .-|.|.- + T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--f 108 (765) T protein:vir:96 37 MIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDG-----PTPAAK-AAAGGQNPYVVPTMLQDWYNSQG--F 108 (765) T ss_pred chhHHHHhhcccccccCCCCCCCCcccCcccceecccccccc-----ccchHH-HhhhccCccchhhHHHhhhcccC--C Confidence 33222100000 1111110000111123334554321111 112221 111111222333322 2233321 1 Q ss_pred CCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC------H---HHHHHHhccCCCCCCHHHHHHHHHHH Q lcl|Aclame:pro 77 SRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP------P---ALEAIVEDIDGEGVSLDQQAKKALGY 147 (535) Q Consensus 77 ~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p------~---~l~~l~~d~d~~G~~L~~~~~~~~~~ 147 (535) . . .+.+..|.. ....+.+|+..+.-+.++...|+.. + .++..++. ..+.+.++.+++. T Consensus 109 ~-g---yql~alY~~----~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~r-----l~v~~~l~ea~~~ 175 (765) T protein:vir:96 109 I-G---YQACAIISQ----HWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDME-----FRVKDNLVELNRF 175 (765) T ss_pred c-c---HHHHHHHHh----CchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHH-----hhHHHHHHHHHHH Confidence 0 0 112333333 3556777877778888888877432 1 23334443 2578888888888 Q ss_pred HHhhCcEEEEEeecCCCc-----ccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec-CCCccc Q lcl|Aclame:pro 148 TMGFGRAAIFTDYPNVGR-----PVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ-DDGFET 221 (535) Q Consensus 148 ~l~~G~~~vlVD~p~~~~-----~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~ 221 (535) +-.||.+++++.-...+. +... +-...+..-+|..++|-.+.. ....|...++ ...|+. T Consensus 176 ~RlyGga~i~i~i~~~D~~~l~~PL~~-~~I~kg~~kgl~vldp~~~~~--------------~~v~e~~~Dp~sp~fg~ 240 (765) T protein:vir:96 176 KNVFGVRIALFVVESDDPDYYEKPFNP-DGIAPGSYKGISQIDPYWAMP--------------QLTAESTADPSAEHFYE 240 (765) T ss_pred hhhceeeEEEEEecccCcchhhccccc-cccccceeeEEEEechhhccc--------------ccchhccccccccccCc Confidence 888998888876432211 1000 000001111233332222100 0001111111 122332 Q ss_pred ceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEE----EeccCCCcCCCCcchHHHHHHHH Q lcl|Aclame:pro 222 TYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQ----FIGPLDNNADIDHPPLLDLCEVN 297 (535) Q Consensus 222 ~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v----~~~~~~~~~~~~~ppL~dLA~ln 297 (535) - ..|..... . -|+-..|.|. ...........|.|-|.- +.=. T Consensus 241 P------------------~~y~i~g~---------~------IH~SRli~~~g~~lpd~lk~~~~~~G~Svlq~-~yd~ 286 (765) T protein:vir:96 241 P------------------DFWIISGK---------K------YHRSHLVVVRGPQPPDILKPTYIFGGIPLTQR-IYER 286 (765) T ss_pred c------------------eeeeecCc---------e------eccceEEEecCCCchhhhccccCccCccHHHH-HHHH Confidence 2 11211100 0 0221122221 001111222345554433 3333 Q ss_pred HHHHh-hHHHHHHHHHHhcCceeEeeCCCCccchhccCc----ceeeecCcccccCCCCCccceeecCcchhHHHHHHHH Q lcl|Aclame:pro 298 IGHYR-NSADYEEMAFVAGQPTAFFTGLTKDWVEDVFKD----FKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHK 372 (535) Q Consensus 298 ~~hy~-~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~----~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~ 372 (535) +..|. ....-.++++-..+.++-+.++..-..++.... .....+...++.+..+.++..+...-+++. ..+... T Consensus 287 I~~~~~t~~~~a~Ll~k~~~~v~k~~~~~~l~~~~~l~~r~~~~~~~r~n~g~~~id~ee~~e~~s~~lsgl~-d~l~~~ 365 (765) T protein:vir:96 287 VYAAERTANEAPLLAMSKRTSTIHVDVEKAIANEDAFNARLAFWIANRDNHGVKVIGIDETMEQFDTNLSDFD-SVIMNQ 365 (765) T ss_pred HHHHHHHHHHHHHHHHHhccceeeechHhhhccHHHHHHHHHHHHHhcCCceeEEecCCcceeEEecccCCHH-HHHHHH Confidence 34443 333444566777777776666532111111100 001123445566777767666666555553 455555 Q ss_pred HHHHHHHhhhhh---ccc--ccccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCceeEEEEeccc Q lcl|Aclame:pro 373 ESQMIAMGANLL---VKS--GGNRTFGEAQQEEASEQSILSACTK-NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDF 446 (535) Q Consensus 373 e~qm~~lga~~l---~~~--~~~~ta~~a~~~~~~~~S~L~~~a~-~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df 446 (535) .++|.......+ ... +|-.++++. +...=+..+.++.. .+..+++++++++.+..+. ++ + +++.+.. T Consensus 366 ~~~iAaas~IP~t~LfGqsp~GlnATGe~--D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s~~i--~~-d--~~i~Fnp 438 (765) T protein:vir:96 366 YQLVAAIAKTPATKLLGTSPKGFNATGEH--ETISYHEELESIQEHIFDPLLERHYLLLAKSESI--DV-Q--LEIVWNP 438 (765) T ss_pred HHHHHhhhCCCeeeeccCCcccccCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-c--ceEEeCC Confidence 566654332222 221 121111121 22222345666664 4688899999999876432 22 2 4444444 Q ss_pred CCccCCHHH-------HHHHHHHHhcCCCCHHHHHHHHHhCCCCC-ccCCHHHHHH--HHHhchhh-cccCCCcCCCC-C Q lcl|Aclame:pro 447 PAARLTPNE-------RAELILEWQQGAITFKEMRAGLRRAGVAS-EDDAKAETEG--KATVEFIA-KTAAAGKVGDA-A 514 (535) Q Consensus 447 ~~~~~d~~~-------~~al~~l~~~G~is~et~~~~L~r~gvl~-~~~~~eee~~--~i~~e~~~-~~~~~~~~~~~-~ 514 (535) .....+.+. +++...++++|.|+-+..+++|+..+... .+.+.++++. -+..+... ...++....+. . T Consensus 439 L~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~pe~~~~~~~~~~~~~~~~~ 518 (765) T protein:vir:96 439 VDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSPENLAELEKAGAQSAKAKG 518 (765) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCccccccccCCCcccccccC Confidence 433333322 35677789999999999999987654321 1111111111 01000000 00000000000 0 Q ss_pred CCcccccccccccCCCCCCCC Q lcl|Aclame:pro 515 SGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~ 535 (535) .+..+.+.-....|++++.+- T Consensus 519 e~~~~~a~p~~~eg~~~~~~~ 539 (765) T protein:vir:96 519 EAERAEAQAGAVEGAGDPVPA 539 (765) T ss_pred ccccccCCCCccCCCCccccc Confidence 000000000001111111111 No 115 >protein:vir:102668 Length: 547 # NCBI annotation: Hypothetical protein # Family: family:all:481 # MgeID: mge:1624 # MgeName: VP2 # Cross-refs: genbank:acc:YP_024419;genbank:gi:48696640;genbank:GeneID:2948135 Probab=97.24 E-value=0.00012 Score=42.08 Aligned_cols=450 Identities=10% Similarity=0.045 Sum_probs=187.7 Q ss_pred CCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHH-HHhhhccchhHHHHHHHHhh---- Q lcl|Aclame:pro 35 VGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYET-YLQRAIFYNVTARTLDGMMG---- 108 (535) Q Consensus 35 v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~-rl~rA~~~n~~~~tv~~l~G---- 108 (535) |+ ......+|+.++.--.= +..|++...-.||....+..+.-+ ..+.. +...-.|-+...+.++.++. T Consensus 1 ~~-----~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~-~~~~~~~~~~~i~dst~~~a~~~Las~L~~ 74 (547) T protein:vir:10 1 ME-----NSKIVKRLDFLKTDRKNVEQIWDCIRKYIMPMRSDFFSDLRS-EGSINWNQNREVFDSTAGDGLETLSSSLHG 74 (547) T ss_pred CC-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccccccCCCC-CcccccccccccccchHHHHHHHHHHHHHH Confidence 22 24444444444332110 444555556667764332111100 01111 11111344445555554444 Q ss_pred hhhc-ccccc--ccC-------HHHHHHH--------hccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchH Q lcl|Aclame:pro 109 QVFS-RDPIR--QLP-------PALEAIV--------EDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVL 170 (535) Q Consensus 109 ~lF~-k~p~~--~~p-------~~l~~l~--------~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~a 170 (535) .+|. ..|=+ .++ ..++.++ +.++ ..+++.-+..+.++.+.+|.+-++++.++... T Consensus 75 ~ltPp~~~WF~l~~~d~~~~~~~~v~~~L~~ve~~i~~~l~--~snf~~~~~~~~~~L~~~G~a~l~~~~d~~~~----- 147 (547) T protein:vir:10 75 SLTSPATKWFELAFRDKELNSDDECRKWLENATHDVYSALQ--DSNFNLEANETYIDLCGYGNAIMVEEEDEDEE----- 147 (547) T ss_pred hhcCCCCcccccccCCccccchHHHHHHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHCcEeEEeccCCCCC----- Confidence 4443 11111 111 1233333 3333 24678888888999999999999887543211 Q ss_pred HHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccc-------------------eeeEEEE Q lcl|Aclame:pro 171 EQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETT-------------------YVQQWRV 229 (535) Q Consensus 171 d~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~-------------------~~~~~rv 229 (535) ..+++..|+..++. ....+..++.+ |.-++..... ...|+.. .++.|-. T Consensus 148 ------~~~r~~~~pl~~~~---v~~d~~G~v~~-i~r~~~~t~~qi~~~fg~~~l~~~v~~~~~~~~~~~~~~~~v~~~ 217 (547) T protein:vir:10 148 ------GSVVFQSSPIQDSY---FEEDSRGQVVN-FYRVFRWTPAQIYDRFGDEGTPEAIIKKAKEASNQAALKQEVVMC 217 (547) T ss_pred ------CceeEEEeecceEE---EeeCCCcCeee-eeeeeeccHHHHHHhcCcccCCHHHHHHHhcCCCcccceEEEEEE Confidence 01456777776642 22222223333 3222222111 0222211 1222211 Q ss_pred EeecCCce--E--E----------EEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHH Q lcl|Aclame:pro 230 LQLNAEGN--Y--Q----------VERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCE 295 (535) Q Consensus 230 l~l~~~g~--y--~----------v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ 295 (535) .++..++. . . ..+|... . ....+..+++-+.+.+||+.|... .+...|..|..+... T Consensus 218 v~~~~~~~~~~~~~~~~~~~~~p~~s~~~e~-~------~~~~~l~esg~~e~P~~~~Rw~~~--~ge~YGrgp~~~~l~ 288 (547) T protein:vir:10 218 VFTRYDKKQNRNAGTVLAPTERPFGKKWILK-E------GAVQLGEEGGYYEMPAYAIRWRKS--AGSQWGFGPSHLALP 288 (547) T ss_pred EeeccCCCCCccccceeeccccceeEEEEEe-c------CceeeeecCCcccCCeeeeeeeec--CCcccccchHHHHHH Confidence 11111110 0 0 0111110 0 011223333334454555555433 344556667665544 Q ss_pred HHHHHHhhHHHHHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecCcc-hhHHHHHHHH Q lcl|Aclame:pro 296 VNIGHYRNSADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPN-SVPFEAMTHK 372 (535) Q Consensus 296 ln~~hy~~~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~-~l~~~~l~~~ 372 (535) -...+...+-..-..++.+..|.+.+. |+. +++.++++.++........+.++..+. ....+.++++ T Consensus 289 D~k~L~~l~~~~l~~~~~~~~pp~~v~~~g~~----------~~~~~~pgg~~~~~~~~~v~pl~~~~~~~~~~~~i~~~ 358 (547) T protein:vir:10 289 DVLTANRYVELVLRSSEKVIDPAIMVTERGLI----------SDIDLGASGLTVVRDMESMKPFESRARFDVSSIQLTDL 358 (547) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeccccccc----------ccceecCCeeeecCCcccceeeecccchHHHHHHHHHH Confidence 445555555555566777777776543 221 246666766665444445665665542 2234677888 Q ss_pred HHHHHHH--hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCCCC-cee----EE Q lcl|Aclame:pro 373 ESQMIAM--GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGIVND-ETV----EY 440 (535) Q Consensus 373 e~qm~~l--ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~~~~-~~~----~v 440 (535) +++|... .-.+...+....||++...+.......|.-+-.++. -.+++++.++.+ .|..... .++ .. T Consensus 359 ~~rI~~af~~d~~~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r-~g~lP~~p~~l~~~~~~ 437 (547) T protein:vir:10 359 RSAVRRIYYVDQLQMKDSPAMTATEVQVRYELMQRLLGPTLGRLENDFLSPMIQRTFNIRFR-AGKLGELPSKLLESGKA 437 (547) T ss_pred HHHHHHHhhhhhhhcCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCchhhhccCcc Confidence 8877652 112334456678999998766554445554444443 344566666655 2321111 111 11 Q ss_pred EEecccCCccCCH---HHHH---HHHHHH----hc-----CCCCHHHHHHHH-HhCCCCCccCCHHHHHHHHHhch---- Q lcl|Aclame:pro 441 NLNTDFPAARLTP---NERA---ELILEW----QQ-----GAITFKEMRAGL-RRAGVASEDDAKAETEGKATVEF---- 500 (535) Q Consensus 441 ~~n~df~~~~~d~---~~~~---al~~l~----~~-----G~is~et~~~~L-~r~gvl~~~~~~eee~~~i~~e~---- 500 (535) .++-.|...-.-+ +.+. .++..+ +. ..|....+.+.+ ...||-..-...+++.+.+.++. T Consensus 438 ~~~v~~is~Laraq~~~~~~~i~~~~~~v~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~ 517 (547) T protein:vir:10 438 AMDIVYTGPLSRAQKIDQAASIERWAGSTAQLAEINPEVLDIPDWDEMVRMLGSLLGAPQTLMRPKAKVTSIRKNRSQTQ 517 (547) T ss_pred eEEEEeccHHHHHHHHHHHHHHHHHHHHHHHhhccChhhhhcCCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHH Confidence 2223343321111 1222 222222 11 124444444444 45665433333444433332221 Q ss_pred --hhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 501 --IAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 501 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+.+++...+ +..+ +-|+++..=.-| T Consensus 518 q~~~qaa~~~~~g------~~m~--~~~~~~a~~~~~ 546 (547) T protein:vir:10 518 QKAEQAAIAEAEG------NAME--AQGKGQAALKEN 546 (547) T ss_pred HHHHHHHHHHHHH------HHHH--hhcCcccchhcc Confidence 11111111000 0111 111222221122 No 116 >protein:vir:78696 Length: 542 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285446;genbank:gi:148724480;genbank:GeneID:5220167 Probab=97.18 E-value=0.00014 Score=41.70 Aligned_cols=445 Identities=13% Similarity=0.130 Sum_probs=176.3 Q ss_pred CCCCCccCHHHHHHHHHHHHHHH---HhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMD---CLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMG 108 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d---~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G 108 (535) |-.. ...+|+.+++ -+ ...|++-..-.||..-..+.+.. .. +..+ .|-+...+.++.++. T Consensus 1 mk~~---------a~~r~~~l~~~R~~~--e~~w~e~~~y~lP~~~~~~~~~~-~~----~~~~-~~dstg~~a~~~Laa 63 (542) T protein:vir:78 1 MKGL---------AQARYSAMRADREDF--LDMARRCAALTLPYLLTEDGHAS-GG----RLQQ-PYQSLGSKGVNALSS 63 (542) T ss_pred ChhH---------HHHHHHHHHHHhhHH--HHHHHHHHHHhccccCCCCCCcc-cc----cccc-cccchHHHHHHHHHH Confidence 4421 1123333322 22 33455555555775433322221 11 1111 234444455554444 Q ss_pred ----hhhc-ccc--ccccCH---------------HHHHHHhccC------CCCCCHHHHHHHHHHHHHhhCcEEEEEee Q lcl|Aclame:pro 109 ----QVFS-RDP--IRQLPP---------------ALEAIVEDID------GEGVSLDQQAKKALGYTMGFGRAAIFTDY 160 (535) Q Consensus 109 ----~lF~-k~p--~~~~p~---------------~l~~l~~d~d------~~G~~L~~~~~~~~~~~l~~G~~~vlVD~ 160 (535) .+|. ..| .+.+++ .++.+++.|. ...++++.-+..++.+...+|.+.+++|. T Consensus 64 ~l~~~ltpp~~~WF~l~~~d~~l~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~ 143 (542) T protein:vir:78 64 KLMLSLFPIQTSFFKLQINDAEIASVPELTPEVRSEIDMNLSKMEKMVMQQIAESSDRVQLTAAMKHLIVTGNVLVFAGK 143 (542) T ss_pred HHHHhhcCCCCccccccCCHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEecC Confidence 4443 111 112221 1233332221 12356788888899999999999988874 Q ss_pred cCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccceee------------- Q lcl|Aclame:pro 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETTYVQ------------- 225 (535) Q Consensus 161 p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~~~~------------- 225 (535) +. +..|+-.+ +-..... ...+.-|..++.+.-. ..+|+..... T Consensus 144 ~~------------------~~~~pl~~---y~v~~d~-~G~vd~v~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~ 201 (542) T protein:vir:78 144 KT------------------LKVYPLDR---YVIERDG-DGNVIEIITRELVDRSLLPAEFQKQSLLEGKDSNAVGEDGP 201 (542) T ss_pred CC------------------ceEEecce---eEEeeCC-CCCeEEEeeeeecCHHHHHHhhccccCchHHHhhccccCCC Confidence 31 22333333 2222222 2223334444433221 1234321111 Q ss_pred EEE---EEeecCCc-eEEE-------EEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHH Q lcl|Aclame:pro 226 QWR---VLQLNAEG-NYQV-------ERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLC 294 (535) Q Consensus 226 ~~r---vl~l~~~g-~y~v-------~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA 294 (535) .+. ...+..+. .|+. ..|..+..+.... ......+-+.+.+||+.|... .+...|.+|..+.. T Consensus 202 ~~~v~~~v~pr~~~~~~~~~~~~~~~~s~~~e~~g~~v~----~~~~e~g~~~~P~i~~Rw~~~--~ge~YGrgp~~~~l 275 (542) T protein:vir:78 202 KFGVAQGKGGRNDAEVFTCCKLVDGQHRWHQECDGKEIK----GSRSSSPLKHSPWLPLRFNVV--DGESYGRGRVEEFF 275 (542) T ss_pred eEEEEEEeecccCCccccccccCCCeEEEEEEecccccc----ccccccccccCCceeeeeeec--CCCccccchHHHHH Confidence 111 11121111 1110 0111111111000 001112223344444444433 34456777776655 Q ss_pred HHHHHHHhhHHHHHHHHHHhcCceeEee--CCCCccchhccCccee-eecCcccccCCCCCccceeecC-cchh--HHHH Q lcl|Aclame:pro 295 EVNIGHYRNSADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKV-HLGSRAIIPLPQGATAGILQIT-PNSV--PFEA 368 (535) Q Consensus 295 ~ln~~hy~~~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i-~iG~~~~~~lp~~~~~~~~e~~-~~~l--~~~~ 368 (535) .-...+...+-..-..++.+..|...+. |.. .+..+ ..|++.++. ....+.+.+++. +..+ ..+. T Consensus 276 ~D~k~L~~l~~~~l~~~~~a~~pp~lv~~~g~~--------~~~~~~~~~~g~iv~-g~~~~v~~~~~~~~~~~~~~~~~ 346 (542) T protein:vir:78 276 GDLSSLDALTRSLIEGSAAAAKVVFMVSPSATT--------KPQSLARAGTGAIIQ-GRAEDVSVVQANKGADFRTVQEM 346 (542) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceeecccccc--------chhhcccCCCceeec-CCccceeeeecccccchhHHHHH Confidence 5555555555556666677777775543 211 12223 233333332 222345556543 3334 3577 Q ss_pred HHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCceeEEE Q lcl|Aclame:pro 369 MTHKESQMIAMGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGI--VNDETVEYN 441 (535) Q Consensus 369 l~~~e~qm~~lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~--~~~~~~~v~ 441 (535) +++++++|...=.-+...+....||++...+..-....|.-+-.+++ -.+++++.++.+ .|.. ...+-+ T Consensus 347 i~~~~~rI~~aFl~~~~~d~~rvTAtEV~~r~~E~~~~LG~v~~rl~~E~L~Pli~R~~~il~r-~g~lP~~p~~lv--- 422 (542) T protein:vir:78 347 IRDLSQRISDAFLILNVRQSERTTATEVREVQMELDRQLSGIYGSLTVELLTPYLNRKLHLMQR-SKQLPSLPKGLV--- 422 (542) T ss_pred HHHHHHHHHHHhcccccCCcccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCchhce--- Confidence 88888888553111112344557999988766555555555555543 344556666555 2321 112223 Q ss_pred EecccCCccC---CHHHHHHHHH---HH-hc-------CCCCHHHHHHHH-HhCCCCCcc--CCHHHHHHHHHhch---- Q lcl|Aclame:pro 442 LNTDFPAARL---TPNERAELIL---EW-QQ-------GAITFKEMRAGL-RRAGVASED--DAKAETEGKATVEF---- 500 (535) Q Consensus 442 ~n~df~~~~~---d~~~~~al~~---l~-~~-------G~is~et~~~~L-~r~gvl~~~--~~~eee~~~i~~e~---- 500 (535) +.+|.+.-- -.+++..+.. .+ +. -.|....+.+.+ ...|+-... .+.|+...+.++.. T Consensus 423 -~~~~~s~La~~~r~~~~~~l~~~~~~i~~~~~p~~l~~~id~d~~~~~~a~~~Gvp~~~i~~s~e~~~~~~~q~q~~~~ 501 (542) T protein:vir:78 423 -MPTVVAGLGGVGRGEDRAALIEFMQTVGQAMGPEALQQFIDPTEFLKRLAAASGIDTLNLVKSPETMANEAQQAQQQQM 501 (542) T ss_pred -eeeeechHHHHHHHHHHHHHHHHHHHHHHhcCChhHHhcCCHHHHHHHHHHHcCCCHhhccCCHHHHHHHHHHHHHHHH Confidence 333332210 1112222221 11 11 123333344433 345653222 22343333222211 Q ss_pred -hhcccCCCcCCCCCCCccccccccccc---CCCCCCCC Q lcl|Aclame:pro 501 -IAKTAAAGKVGDAASGGTNKAKLNNGN---GGGNQAGN 535 (535) Q Consensus 501 -~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 535 (535) .+....++....+..++.-.++.+... ..+|..|. T Consensus 502 ~~al~~~a~~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 540 (542) T protein:vir:78 502 TASLMGQAGQLAKSPIGEKMMQQINAPGQEAPAGPQTGE 540 (542) T ss_pred HHHHHHhhhhccccccccchhhhcCCCCcCCCCCCcccc Confidence 111112222222112221122222212 23344444 No 117 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=97.17 E-value=0.00014 Score=41.65 Aligned_cols=418 Identities=15% Similarity=0.114 Sum_probs=185.4 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCC--CCccCHHHHHHHHHHHHH-HHHhcChHHHHHHHhhhCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPN--VGYQRVEFGEMLPKWRKI-MDCLSGQEAIKAKREEYLPMPSVDS 77 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~--v~~~hp~y~~~~~~w~~i-~d~~~G~~~~~~~g~~YLP~~~~~~ 77 (535) |++---.--|-+....|.-||++-.+|+.-.++. .+.-.|. +|..| +..-.| .++ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~------~l~~iLr~a~~g----------d~~------ 58 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPA------KLARILVEAEQG----------NLQ------ 58 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHH------HHHHHHHhhhCC----------CHH------ Confidence 5443222122222333333455444444333321 1111222 22211 112222 111 Q ss_pred CChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-------HH----HHHHHhccCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 78 RDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-------PA----LEAIVEDIDGEGVSLDQQAKKALG 146 (535) Q Consensus 78 ~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-------~~----l~~l~~d~d~~G~~L~~~~~~~~~ 146 (535) ..-+-|+..+.| -.++...++.....|.+.++.++-+ .. ++.++.+. .+++.++..++. T Consensus 59 ---~~~~L~e~m~e~---D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~----~~~~~~i~~~ld 128 (526) T protein:vir:99 59 ---AQAELFMDMEER---DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL----EGLEDLLLDALD 128 (526) T ss_pred ---HHHHHHHHHHhh---ChHHHHHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcc----cCHHHHHHHHHH Confidence 112345555544 3555666666666666666666432 11 23333322 258888887774 Q ss_pred HHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeE Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQ 226 (535) Q Consensus 147 ~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~ 226 (535) ++.+|.+.+=+- |+.+ +|.-.+..+..| +...|.. T Consensus 129 -a~~~G~s~~Eiv--------------------------------w~~~--~g~~~~~~l~~r-----~~~~f~~----- 163 (526) T protein:vir:99 129 -GIGHGYSCIELE--------------------------------WALQ--GREWMPLAFHHR-----PQSWFQL----- 163 (526) T ss_pred -hhhhcceeEEEE--------------------------------Eeec--CCceeEEEeeee-----cccceee----- Confidence 667776655332 2221 121111111111 0011100 Q ss_pred EEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 227 WRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSAD 306 (535) Q Consensus 227 ~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sd 306 (535) +.++..+++ .+.. .. +.++. .+.++|=+ .+....+...+.+.|..++..-+--.....+ T Consensus 164 ------~~~~~~~l~-~~~~-~~-------~g~~l----~~~k~i~~--~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~ 222 (526) T protein:vir:99 164 ------NPEDQNELR-LRDN-SP-------AGEAL----QPFGWIIH--RPRARSGYVARSGLFRVLAWPYLFRHYATSD 222 (526) T ss_pred ------ccCCCcEEE-ecCC-CC-------Cceee----cCCCeEEE--eecCCcCCccccchHHHHHHHHHHHHhhHHH Confidence 000000000 0100 00 00010 12222222 2333444556666666666555443346677 Q ss_pred HHHHHHHhcCceeEeeCCCCccchh--ccCcceeeecCcccccCCCCCccceeecCcchhH-H-HHHHHHHHHHHH--Hh Q lcl|Aclame:pro 307 YEEMAFVAGQPTAFFTGLTKDWVED--VFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-F-EAMTHKESQMIA--MG 380 (535) Q Consensus 307 l~~~l~~~~~P~~~~~G~~~~~~~d--~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~-~~l~~~e~qm~~--lg 380 (535) ...-++.-|.|+++.+-......++ .+...--.+|++++..+|.+....|++..+.+.. + ..++...++|.. || T Consensus 223 w~~f~E~yG~P~~igky~~~a~~~ek~~L~~av~~i~~d~~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLG 302 (526) T protein:vir:99 223 LAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLG 302 (526) T ss_pred HHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhh Confidence 7777888899999988432222222 2222224578899999999999999998655443 3 345555666644 44 Q ss_pred hhhhcccccccchH--HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCC-c-eeEEEEecccCCccCCHHH Q lcl|Aclame:pro 381 ANLLVKSGGNRTFG--EAQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVND-E-TVEYNLNTDFPAARLTPNE 455 (535) Q Consensus 381 a~~l~~~~~~~ta~--~a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~-~-~~~v~~n~df~~~~~d~~~ 455 (535) .-+........+++ .+..........+.+-+..++++++ +++++++.|-.....+ . ...+++ ++....-.... T Consensus 303 qtlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~--~~~e~eDl~~~ 380 (526) T protein:vir:99 303 GTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVF--DLREQADITSM 380 (526) T ss_pred hhhccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEe--CCCCcccHHHH Confidence 44333222222222 2334455556778889999999997 5999999986542211 1 123332 22211111345 Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCC---- Q lcl|Aclame:pro 456 RAELILEWQQGA-ITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGG---- 530 (535) Q Consensus 456 ~~al~~l~~~G~-is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 530 (535) ++.+.++...|. |+.+.+.+ +.|+-.+. ..|+... +...+.... .....+....+... T Consensus 381 a~~~~~L~~~G~~i~~~~i~e---~~Gip~~~-~~e~~l~---------~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 443 (526) T protein:vir:99 381 AQSIPALVNVGLEIPSAWVYD---KLGIPQPA-KNEPVLR---------SAAQPAILS----RQHGQRVAALATIVGPRY 443 (526) T ss_pred HHHHHHHHhCCCccCHHHHHH---HhCCCCCC-CcccccC---------CCCCCcccc----cccccccccccccccccC Confidence 677778888887 78765554 44652221 1122111 001110000 00011110011000 Q ss_pred CCCCC Q lcl|Aclame:pro 531 NQAGN 535 (535) Q Consensus 531 ~~~~~ 535 (535) +.+.. T Consensus 444 ~~~~~ 448 (526) T protein:vir:99 444 GDQQA 448 (526) T ss_pred cchhh Confidence 11101 No 118 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=97.15 E-value=0.00015 Score=41.56 Aligned_cols=309 Identities=11% Similarity=0.063 Sum_probs=123.1 Q ss_pred EEEEEeecCCC-cccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccc--eeE---EEEe-ccCC Q lcl|Aclame:pro 208 IQENVLAQDDG-FETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFK--EIP---FQFI-GPLD 280 (535) Q Consensus 208 l~E~~~~~~d~-f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~--~IP---~v~~-~~~~ 280 (535) +.|.+-+.+++ |....+ .+++.. ++..|.....+... .....+.+... .|| |+++ +... T Consensus 1 v~Eivw~~~~g~~~~~~l----~~r~~~----~~~~f~~~~~~~l~------~~~~~~~~g~~~~~lp~~kfi~~~~~~~ 66 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKL----AWRPPR----TISRFDVAPDGGLV------AIEQWGVFGKATVRIPVDRLVVFVNERE 66 (355) T ss_pred CeEEEEEeeCCeEEEeee----eecCcc----ceeeeeeccCCcee------EEEecCCCCCCcceeccCCEEEEEeCCC Confidence 22222111111 111000 000000 00111111111000 00000011111 122 2222 2233 Q ss_pred CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCcc--chhc-------------c--CcceeeecCc Q lcl|Aclame:pro 281 NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDW--VEDV-------------F--KDFKVHLGSR 343 (535) Q Consensus 281 ~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~--~~d~-------------~--~~~~i~iG~~ 343 (535) .+...+.+.|..++..-+=--....+...-++.-+.|+++..|-.... ++|. . --..|..|.. T Consensus 67 ~g~p~G~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~ 146 (355) T protein:vir:78 67 GANWLGQSLLRQAYKNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEA 146 (355) T ss_pred CCCccchhhHHHHHHHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcc Confidence 344455655555554433222333444444555566888888753211 1110 0 0123456888 Q ss_pred ccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH-Hhhhhhcccccc--cchHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 344 AIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA-MGANLLVKSGGN--RTFGEAQQEEASEQSILSACTKNVSMAFR 419 (535) Q Consensus 344 ~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~-lga~~l~~~~~~--~ta~~a~~~~~~~~S~L~~~a~~~~~a~~ 419 (535) ++..+|.+.++.|++..+.+... +.++...++|.. +.++++...... .|-..+..........+.+.+..+.++++ T Consensus 147 a~~iip~g~~ie~~ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~vh~~v~~~~~~aD~~~i~~~ln 226 (355) T protein:vir:78 147 AGGYIPHGANFTLTGVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDTFASFFTGSLNAVMKHIADVTQ 226 (355) T ss_pred eeEeecCCceEEEeecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 88899999999999988765443 455555566533 334444322211 22233344455557778888999999997 Q ss_pred -HHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCC-CHHHHHHHHH-hCCCCCccCCHHHHHHHH Q lcl|Aclame:pro 420 -KALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAI-TFKEMRAGLR-RAGVASEDDAKAETEGKA 496 (535) Q Consensus 420 -~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~i-s~et~~~~L~-r~gvl~~~~~~eee~~~i 496 (535) +++++++.|-... ...-..|++. .... -+...++.+.+++..|.+ +.+....+++ +.|+-.+....+ +.... T Consensus 227 ~~li~~l~~lN~~~-~~~~P~~~~~--~~~~-~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~-~~~~~ 301 (355) T protein:vir:78 227 QHVVEDLVDQNWGP-EEPAPRLVPA--QLGK-EQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDD-GADAA 301 (355) T ss_pred HHHHHHHHHhcCCC-CCCCCEEEec--CcCh-hHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCc-ccCCc Confidence 5899888876321 1112234432 1122 223346677788888875 4333333443 456532222221 11100 Q ss_pred HhchhhcccCCCcCCC-CCCCccccccc-cccc-----------CCCCCCCC Q lcl|Aclame:pro 497 TVEFIAKTAAAGKVGD-AASGGTNKAKL-NNGN-----------GGGNQAGN 535 (535) Q Consensus 497 ~~e~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~-----------~~~~~~~~ 535 (535) +.........+..++. .+...+...+. .+.+ -+.+-.|| T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 353 (355) T protein:vir:78 302 AAKAAGRRRAKRLPGQRQGAALPSRSPRADPPRRRGPLRRRPRHPAHRRCAP 353 (355) T ss_pred cccccccccccccCCccccccccccCCCCCChhhhHHHHHHhhccccCCCCC Confidence 0000000000000000 00000000000 0000 01111111 No 119 >protein:vir:104437 Length: 714 # NCBI annotation: putative phage portal protein # Family: family:all:487 # MgeID: mge:1471 # MgeName: 86 # Cross-refs: genbank:acc:YP_794061;genbank:gi:116222006;genbank:GeneID:4397502 Probab=97.13 E-value=0.00016 Score=41.43 Aligned_cols=474 Identities=11% Similarity=0.034 Sum_probs=184.4 Q ss_pred cCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhhCCCCCCCCCChhhHHHHHHHHhhhc Q lcl|Aclame:pro 18 IPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEYLPMPSVDSRDEEQRRRYETYLQRAI 94 (535) Q Consensus 18 ~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~YLP~~~~~~~~~E~~~~Y~~rl~rA~ 94 (535) +--+-++++..+.+..+....+-.|.. +.....+...+|+.. ..|. .+..-+++-...-+.+-...+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~r~~a~~d~~fy---~G~Qw~~~~~~~l~~~g~p~~ 70 (714) T protein:vir:10 1 MKNEINTTAMKNDHGSTPRFSQRQLLS-------LCSDIDSQPLWRDAANKACAYY---DGDQLAPEVIQVLKDRGQPMT 70 (714) T ss_pred CCcCcCcccCCCcchhhhhhhHHHHHH-------HHHHHhhhHHHHHHHHHHHHhh---cCCCCCHHHHHHHHhcCCCcE Confidence 444445555555555433222222222 222244555555322 2343 233333333334444444566 Q ss_pred cchhHHHHHHHHhhhhhcccccccc-C----H-------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEE--EEee Q lcl|Aclame:pro 95 FYNVTARTLDGMMGQVFSRDPIRQL-P----P-------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAI--FTDY 160 (535) Q Consensus 95 ~~n~~~~tv~~l~G~lF~k~p~~~~-p----~-------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~v--lVD~ 160 (535) .+|.++++|+..+|.-=++.+.+.+ | + .|..+++.+- +-++.+.-+..+|..++.+|..|+ .+|+ T Consensus 71 ~~N~i~~~v~~v~g~~~~nr~~~~v~pr~~~~~~~~~Ae~l~~~~~~~~-~~~~~~~~~s~af~~~~~~G~G~~~~~~d~ 149 (714) T protein:vir:10 71 IHNLIAPTVDGVLGMEAKTRTDLIVMSDDPNDETEKLAEAINAEFADAC-RLGNMNKARSDAYAEQIKAGLSWVEVRRNS 149 (714) T ss_pred EeccHHHHHHHHHHHHHhCCcceEEecCCCChhhHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHhhhcccceEEeeecc Confidence 6999999999999999777666642 2 1 1222222111 124567778899999999998887 4565 Q ss_pred cCCCcccchHHHHhccCCcEEEEechhhhhcceee--ecCCccceeEEEEEEEEe------------------------- Q lcl|Aclame:pro 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTK--LVGGKSVISLVVIQENVL------------------------- 213 (535) Q Consensus 161 p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~--~~~g~~~Lt~v~l~E~~~------------------------- 213 (535) ...+. .+++..++|.+|+ |+.. ..+. ..--|+..+..+. T Consensus 150 d~~~~------------~i~i~~v~p~~v~-~Dp~a~~~D~-sDar~~~~~~~~~~~~~~~~fp~~a~~i~~~~~~~~~~ 215 (714) T protein:vir:10 150 EPFGP------------EFKVSTVSRNEVF-WDWLSREADL-SDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGF 215 (714) T ss_pred CCCCC------------CeEEEecChhhee-eccccccCCh-hhhhhhhhhccCCHHHHHHhcCCchhhhhccchhhcCc Confidence 44332 3566666666653 3311 1100 0000000000000 Q ss_pred ------------------------ecCCCcccceeeEEEEEeec------------CCceEEEEEEeeecc-------C- Q lcl|Aclame:pro 214 ------------------------AQDDGFETTYVQQWRVLQLN------------AEGNYQVERWRRETQ-------E- 249 (535) Q Consensus 214 ------------------------~~~d~f~~~~~~~~rvl~l~------------~~g~y~v~~w~~~~~-------~- 249 (535) ...+.|......++||.+.. .+|.+ +..|..+-. + T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~v~E~w~k~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~g~ 294 (714) T protein:vir:10 216 VDTTVTEGQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVVYYRTFERLPVIELSNGRV-VAFDKNNLMQAVAVASGR 294 (714) T ss_pred ccchhhhhhcccccccchhhcccccccccccccCcceEEEEEEEEeEEEEEEeecCCCCCe-eeeCccCHHHHHHHHhcc Confidence 00011111222234443321 00000 000000000 0 Q ss_pred -----C------ccccccceeeeccCCC--ccceeEEEEeccCC-CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhc Q lcl|Aclame:pro 250 -----E------MYYSYSKHVPTDGNGN--PFKEIPFQFIGPLD-NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAG 315 (535) Q Consensus 250 -----~------~~~~~~~~~~~~~~~~--~l~~IP~v~~~~~~-~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~ 315 (535) . ..+-.+.+ ....+.. |-+.+|||++.... .......--+.++.+.+..++...|-+.+++. + T Consensus 295 ~~~~~~~~~rv~~~~~~g~~-~L~~~~~p~p~~~fp~vP~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~--~ 371 (714) T protein:vir:10 295 VQVKVGRVSRIREAWFVGPH-FIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ--A 371 (714) T ss_pred ceecccceeeEEEEEEecch-hhhcCCCCCCCCceeeEEecceeeeccCccceehhhhhhHHHHHHHHHHHHHHHHh--C Confidence 0 00000001 1112222 34567777653322 11122223456777888888877777777763 2 Q ss_pred CceeEeeCCCCccchhccCcceeeecCcccccCCCC----C-ccceeecCc-chh---HHHHHHHHHHHHHHHhh---hh Q lcl|Aclame:pro 316 QPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQG----A-TAGILQITP-NSV---PFEAMTHKESQMIAMGA---NL 383 (535) Q Consensus 316 ~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~~----~-~~~~~e~~~-~~l---~~~~l~~~e~qm~~lga---~~ 383 (535) .-.....|....++...... +.- ++.++.+-++ + ....+++.+ ..+ ..+.|+.....+..+.+ .+ T Consensus 372 ~~~~~~~gav~~~d~~~~e~--~~r-p~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~ 448 (714) T protein:vir:10 372 KRVIMDEDATQLSDNDLMEQ--LER-PDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAF 448 (714) T ss_pred CceeeccccccccHHHHHHh--ccC-CCCeEEecccccccCCccccccccCCCCCcHHHHHHHHHHHHHHHHhhCCCHHH Confidence 22333344333322211110 000 1122322111 1 111222222 222 23555555555544432 22 Q ss_pred hcccccccchHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC--------CC--ceeEEEEecc--- Q lcl|Aclame:pro 384 LVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMAF----RKALRWANQFQTGIV--------ND--ETVEYNLNTD--- 445 (535) Q Consensus 384 l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a~----~~~lr~~a~~~g~~~--------~~--~~~~v~~n~d--- 445 (535) +... ++.+++.+ .....+..-.|..+..|+..+. +.+|.++..|+.... +. ....+.+|.+ T Consensus 449 lG~~-~na~SGvAI~~r~~qg~~~l~~~~dnl~~~~~~~g~~ll~li~~~~~~~rv~RI~~e~~~~~~~~~~~~n~~~~~ 527 (714) T protein:vir:10 449 LGQD-SGATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDN 527 (714) T ss_pred cCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcccceeEeeccccCC Confidence 3333 34444444 2222333334555555555555 556777888774311 00 0111233321 Q ss_pred -----------cC--------CccCCHHHHHHHHHHHhcC--CCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcc Q lcl|Aclame:pro 446 -----------FP--------AARLTPNERAELILEWQQG--AITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKT 504 (535) Q Consensus 446 -----------f~--------~~~~d~~~~~al~~l~~~G--~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~ 504 (535) |. ......+.+.+|+++.+.. .+...++--.|.-. + .-..++...+|.....-.. T Consensus 528 ~~~~nDi~~~~~dv~i~~~p~~~s~r~~~~~~l~ql~~~~~p~~~~~~~~~~le~~---d-~p~~~ei~~~ir~~~~~~~ 603 (714) T protein:vir:10 528 GELTNDISRLNTHIALAPVQQTPAFKAQLAQRMSEVIQGLPPQVQAVVLDLWVNLL---D-VPQKQEFVERIRAALGTPK 603 (714) T ss_pred ccccccceeeeEEEEEeeccCcHHHHHHHHHHHHHHHhhcCchhhhhHHHHHHHhc---C-CcCHHHHHHHHHHHcCCCC Confidence 11 1111234456677776542 01111111111111 1 1124556666654321110 Q ss_pred cCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 505 AAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) . .+....... .....--.-..+.+ T Consensus 604 ~-----~~~~~~e~q--~~q~~~~~~~~~q~ 627 (714) T protein:vir:10 604 S-----PDEMTPEEQ--EVAAQQQALQQQQA 627 (714) T ss_pred C-----ccccCcchh--HHHHHHHHHHHHHH Confidence 0 000000000 00000000000001 No 120 >protein:vir:105641 Length: 516 # NCBI annotation: putative head-tail connector # Family: family:all:481 # MgeID: mge:1674 # MgeName: K1E # Cross-refs: genbank:acc:YP_425006;genbank:gi:83571754;uniprot:Q2WC46;genbank:GeneID:3837282 Probab=97.05 E-value=0.00019 Score=40.95 Aligned_cols=437 Identities=11% Similarity=0.035 Sum_probs=165.0 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH-- Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD-- 104 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~-- 104 (535) .-.+|-- +.-=.-......|+.++.--.- +..+++-..-.||-. +..+.. ..+.+| .|=+...+.++ T Consensus 1 ~~~~~~~--~~~~~~~~l~~r~~~L~~~R~~~e~~w~e~a~~~lP~~--~~~~~~-----~~~~~~-~~dstg~~a~~~L 70 (516) T protein:vir:10 1 MKQSTDL--EYGGKRSKIPKLWEKFSTKRSSFLDRAKHYSKLTLPYL--MNDKGD-----NETSQN-GWQGVGAQATNHL 70 (516) T ss_pred CCchhhH--hhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcccc--cCCCCC-----cccccc-cccchHHHHHHHH Confidence 1122220 0000012333344433211111 334555555566632 111110 011111 23333344444 Q ss_pred --HHhhhhhcc-cc--ccccCHH--------------HHHHHhccC------CCCCCHHHHHHHHHHHHHhhCcEEEEEe Q lcl|Aclame:pro 105 --GMMGQVFSR-DP--IRQLPPA--------------LEAIVEDID------GEGVSLDQQAKKALGYTMGFGRAAIFTD 159 (535) Q Consensus 105 --~l~G~lF~k-~p--~~~~p~~--------------l~~l~~d~d------~~G~~L~~~~~~~~~~~l~~G~~~vlVD 159 (535) +|.+.+|.- .| .+++++. ++.+++.|. ...++++.-+..+..+...+|.+.+++| T Consensus 71 Aa~l~~~ltpp~~~WF~L~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~d 150 (516) T protein:vir:10 71 ANKLAQVLFPAQRSFFRVDLTAQGEKVLNQRGLKKTELATIFAQVETRAMKELEQRQFRPAVVEAFKHLIVAGSCMLYKP 150 (516) T ss_pred HHHHHhhhcCCCCccccccCChhhHhhhhccCchhHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEeEEec Confidence 444444431 11 1233221 333444332 2346788888888999999999988886 Q ss_pred ecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCccc--------------ce Q lcl|Aclame:pro 160 YPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFET--------------TY 223 (535) Q Consensus 160 ~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~~--------------~~ 223 (535) .+. + +..|+-.+. -.... +.+.+.-++.|+.+.... ..|.. .. T Consensus 151 ~~~----------------~-~~~~pl~~y---~v~~d-~~G~v~~ivrr~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 209 (516) T protein:vir:10 151 SKG----------------A-ISAIPMHHY---VVNRD-TNGDLLDIILLQEKSLRTFDPATRAVVEVGLKGKKCKEDDS 209 (516) T ss_pred CCC----------------C-eEEEEcCeE---EEeeC-CCCCeEEEeeeecccHHHHHHHhhhhhhhhhhhhccCCCCc Confidence 321 1 334444332 22222 222344466666443221 12211 11 Q ss_pred eeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCC---CccceeEEEEeccCCCcCCCCcchH----HHHHHH Q lcl|Aclame:pro 224 VQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG---NPFKEIPFQFIGPLDNNADIDHPPL----LDLCEV 296 (535) Q Consensus 224 ~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~---~~l~~IP~v~~~~~~~~~~~~~ppL----~dLA~l 296 (535) ++-|....+..++.|. |+.+.++ ......++ +.+.+||+.|.... +...|.+|- =|+..| T Consensus 210 ~~i~t~v~~~~~~~~~---~~~~~d~--------~~~~~~s~~~~~e~P~~~~Rw~~~~--ge~YGrgp~~~~L~D~k~L 276 (516) T protein:vir:10 210 IKLYTHAKYLGEGFWE---LKQSADD--------IPVGKVSKIKSEKLPFIPLTWKRSY--GEDWGRPLAEDYSGDLFVI 276 (516) T ss_pred eEEEEEEEecCCCceE---EEEeeCc--------eeeccccccccccCCeeeeeeeecC--CCCcccchHHHhhHHHHHH Confidence 2222222232233221 1111111 11112233 33444555554333 345555564 355555 Q ss_pred HHHHHhhHHHHHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecCc-chh--HHHHHHH Q lcl|Aclame:pro 297 NIGHYRNSADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITP-NSV--PFEAMTH 371 (535) Q Consensus 297 n~~hy~~~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~-~~l--~~~~l~~ 371 (535) | ..+-.+-.....+..|.+.+. |.. .+..+.-|....+.-......+.++... ..+ ..+.+++ T Consensus 277 ~----~l~~~~l~~~~~a~~~~~lv~p~g~~--------~~~~l~~~~~g~~~~g~~~~v~~~q~~~~~d~~~~~~~i~~ 344 (516) T protein:vir:10 277 Q----FLSEAVARGAALMADIKYLIRPGAQT--------DVDHFVNSGTGEVVTGVEEDIHIVQLGKYADLTPISAVLEV 344 (516) T ss_pred H----HHHHHHHHHHHHhcCCCcccCccccc--------chhhhccCCCceeecCCcccceeeecCcccchHHHHHHHHH Confidence 4 233333333444555544442 221 1222333443333212223455666543 233 3467888 Q ss_pred HHHHHHHH--hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCCCceeEEEEecccCC Q lcl|Aclame:pro 372 KESQMIAM--GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMA-FRKALRWANQFQTGIVNDETVEYNLNTDFPA 448 (535) Q Consensus 372 ~e~qm~~l--ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a-~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~ 448 (535) +++++... .-.+...+....||++...+..-....|.-.-.++..= +.-++..+..-++.....+-+.+.+ ..|.. T Consensus 345 ~~~rI~~af~~~~l~~rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~~~p~~P~~lv~~~~-v~~i~ 423 (516) T protein:vir:10 345 YTRRIGVVFMMETMTRRDAERVTAVEIQRDALEIEQNMGGVYSLFATTMQSPVAMWGLLEAGDSFTSDLVDPVI-ITGIE 423 (516) T ss_pred HHHHHHHHHhhhhhhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCCChhhcCcce-ehhHH Confidence 88877552 22234445556899998876654444444444443322 2222333322223333333232232 22222 Q ss_pred ccCCHHHHHHHHHHHh-------c-----CCCCHHHHHH-HHHhCCCCCccCCHHHHHHHHHhchh-------hcccCCC Q lcl|Aclame:pro 449 ARLTPNERAELILEWQ-------Q-----GAITFKEMRA-GLRRAGVASEDDAKAETEGKATVEFI-------AKTAAAG 508 (535) Q Consensus 449 ~~~d~~~~~al~~l~~-------~-----G~is~et~~~-~L~r~gvl~~~~~~eee~~~i~~e~~-------~~~~~~~ 508 (535) .-.-++.+..+....+ . -.|....+.+ .....|+-..-...+|+...+.++.. ..+.++. T Consensus 424 ~L~raq~~~~i~~~~q~i~~~~q~~p~v~d~id~d~~~~~~a~~~gvp~~~irs~eev~~~r~~~~~~q~~~~~~~~~~~ 503 (516) T protein:vir:10 424 ALGRMAELDKLANFAQYMSLPLQWPEPVLAAVKWPDYMDWVRGQISAELPFLKSAEEMEQEQEAQMQAQQAQMLEEGVAK 503 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCHHHHHHHHHHHhCCChhccCCHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 1112222222222111 0 1122222233 33445543323333333333322211 1111111 Q ss_pred cCCCCCCCcccccccccc Q lcl|Aclame:pro 509 KVGDAASGGTNKAKLNNG 526 (535) Q Consensus 509 ~~~~~~~~~~~~~~~~~~ 526 (535) ..+. .-+.+++-. T Consensus 504 ~~~~-----~~~~~~~~~ 516 (516) T protein:vir:10 504 AVPG-----VIQQELKEA 516 (516) T ss_pred cccc-----hhhhhhhcC Confidence 1111 111111111 No 121 >protein:vir:8846 Length: 705 # NCBI annotation: putative portal protein # Family: family:all:1548 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775254;genbank:gi:27476052;genbank:GeneID:2700600 Probab=97.00 E-value=0.00022 Score=40.65 Aligned_cols=469 Identities=12% Similarity=0.036 Sum_probs=182.0 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChH--HHHHHHhhhCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQE--AIKAKREEYLPMPSVDSR 78 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~--~~~~~g~~YLP~~~~~~~ 78 (535) ||.++..-. -+.|-...-....++....-+.|.- .++++=.-|+=....... T Consensus 1 ~~k~~~~~~--------------------------~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~y~g~~~~~~~ 54 (705) T protein:vir:88 1 MAKRRKIKP--------------------------MDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNER 54 (705) T ss_pred CCccccccc--------------------------CCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCCccc Confidence 443322100 0112122222223333333333332 223333445432211111 Q ss_pred ChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh----cccccccc-C-----HHHH----HHHhccCCCCCCHHHHHHHH Q lcl|Aclame:pro 79 DEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF----SRDPIRQL-P-----PALE----AIVEDIDGEGVSLDQQAKKA 144 (535) Q Consensus 79 ~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF----~k~p~~~~-p-----~~l~----~l~~d~d~~G~~L~~~~~~~ 144 (535) .=...++.|.+..+|+.+...+. ..+..+.+ | ..+. .++..+=...++...++..+ T Consensus 55 ----------~~~s~~~~~~v~~~v~~~~~~l~~~~~~~~~~~~~~p~~~~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 124 (705) T protein:vir:88 55 ----------PGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDW 124 (705) T ss_pred ----------CCCCccccHHHHHHHHHHHHHHHHhhcCCCceEEEeeCChhHHHHHHHHHHHHhHHHhhccchhHHHHHH Confidence 11345668888888888877663 33333331 2 1111 22222222335567788999 Q ss_pred HHHHHhhCcEEEEEeecCCCccc----------ch----HHHH---------------------hccCCcEEEEechhhh Q lcl|Aclame:pro 145 LGYTMGFGRAAIFTDYPNVGRPV----------TV----LEQK---------------------LGLYRPTITLVHPTSI 189 (535) Q Consensus 145 ~~~~l~~G~~~vlVD~p~~~~~~----------t~----ad~~---------------------~~~~rPy~~~~~~~~I 189 (535) ++.+|.+|.+.|=|++...-... -+ .+.. ....++.+..++|+++ T Consensus 125 ~~dal~~g~gi~kv~we~~~~~~~e~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~V~p~d~ 204 (705) T protein:vir:88 125 FQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENF 204 (705) T ss_pred HHHHhhcCCeEEEeccccccchhhhhhccCChhhhhhhhhhhhhhcccccccccceeeeEEeeeeecCceeeeeccHHHc Confidence 99999999988877653210000 00 0000 0113466667777776 Q ss_pred hcceeeecCCccceeEEEEEEEEee-------------------------------cCCCcccceeeEEEEEeecC-Cce Q lcl|Aclame:pro 190 INWRTKLVGGKSVISLVVIQENVLA-------------------------------QDDGFETTYVQQWRVLQLNA-EGN 237 (535) Q Consensus 190 i~w~~~~~~g~~~Lt~v~l~E~~~~-------------------------------~~d~f~~~~~~~~rvl~l~~-~g~ 237 (535) + |.-+- .+...-.++..+-.... ..+.|+... .+.+..... ... T Consensus 205 ~-~dp~a-~~~~d~~~~~~~~~~t~~dl~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~--~~~~~~~~~~~~~ 280 (705) T protein:vir:88 205 L-VDRLA-TCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTG--QLQYNSGDDAEAN 280 (705) T ss_pred e-ecCCC-CCcccCcEEEEEEeccHHHHHhhcCChhHhhhhhcccccchhhhhhhcccccccccc--ccccccccccCCc Confidence 4 11100 00111122211111100 001111110 000000000 000 Q ss_pred EEE---EEEeeec-cCCccccccceeeecc-----CCCccceeEEEEeccC-CCcCCCCcchHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 238 YQV---ERWRRET-QEEMYYSYSKHVPTDG-----NGNPFKEIPFQFIGPL-DNNADIDHPPLLDLCEVNIGHYRNSADY 307 (535) Q Consensus 238 y~v---~~w~~~~-~~~~~~~~~~~~~~~~-----~~~~l~~IP~v~~~~~-~~~~~~~~ppL~dLA~ln~~hy~~~sdl 307 (535) ..| +.|..-. .+..... ....+-. ...+++.+||+.+... .....+|.+....+++++..++...+-+ T Consensus 281 r~v~~~E~y~~~d~~~d~~~~--~~~~~~~g~~il~~~~~~~~PF~~~~~~p~~~~~~G~g~~~~~~d~Q~~~n~~~~~~ 358 (705) T protein:vir:88 281 REVWASECYTLLDVDGDGISE--LRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNI 358 (705) T ss_pred eeEEEEEeeeEecccCCccee--eEEEEEeCccccccccCCCCCEEEecceeecCccccCChHHHHhHHHHHHHHHHHHH Confidence 011 1111100 0110000 0000001 1236788999976433 4455678888899999999999999999 Q ss_pred HHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCCCCCccceeecCcchh-HHHHHHHHHHHHHHH-hhhhh Q lcl|Aclame:pro 308 EEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSV-PFEAMTHKESQMIAM-GANLL 384 (535) Q Consensus 308 ~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l-~~~~l~~~e~qm~~l-ga~~l 384 (535) .+.++.+..|...+. |.-.. . ..+...++.++.+...+...++.+.+..- ....++.+...|..+ |.... T Consensus 359 ~d~~~~~~~~~~~~~~g~v~~--~-----d~~~~~pg~vv~~~~~~~i~~~~~~~~~~~~~~ll~~~~~~~~~~tGi~~~ 431 (705) T protein:vir:88 359 MDNIYRTNQGRSVVLDGQVNL--E-----DLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDR 431 (705) T ss_pred HHHHHhccCCceeccccccCc--c-----cccccCCCeeEEecCCCccccccCCcCcHHHHHHHHHHHHHHHHhhCCchH Confidence 999999999877664 21111 1 11222344455544444556655444322 234455555555443 22222 Q ss_pred ccc------ccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCCCCC----C-----------cee Q lcl|Aclame:pro 385 VKS------GGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQTGIVN----D-----------ETV 438 (535) Q Consensus 385 ~~~------~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~g~~~~----~-----------~~~ 438 (535) ..+ .++.|+++...........|..++.++.+ .++.++.++..|.....- + ... T Consensus 432 ~~G~~~~~~~~~~Ta~~i~~~~~~~~~r~~~~~r~~a~~~~~~l~~~~~~li~~~~~~~~~~ri~g~~v~v~~~~~~~~~ 511 (705) T protein:vir:88 432 TRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERS 511 (705) T ss_pred HcCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeeccchhccchHhhccCC Confidence 211 23567776665555555667777766643 346777788887642100 0 000 Q ss_pred EEEEecccCCccC--CHHHHHHHHHHHhc----C----CCCHHHHHHHH----HhCCCCCcc------CCHHHHHHHHHh Q lcl|Aclame:pro 439 EYNLNTDFPAARL--TPNERAELILEWQQ----G----AITFKEMRAGL----RRAGVASED------DAKAETEGKATV 498 (535) Q Consensus 439 ~v~~n~df~~~~~--d~~~~~al~~l~~~----G----~is~et~~~~L----~r~gvl~~~------~~~eee~~~i~~ 498 (535) .+.++........ ..+.+..++.+.+. + .++...+.+.+ +..++-... ...++...+... T Consensus 512 ~v~v~v~~~~~~~eq~~a~l~~ll~~~q~l~~~~~~~~~~~~~~~~~~~~el~e~~~~k~~~~~~~~~~~~e~~~~~~~~ 591 (705) T protein:vir:88 512 DLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIR 591 (705) T ss_pred ceEEeeccccchHHHHHHHHHHHHHHHHHhhcccchhhhcChHHHHHHHHHHHHhhhhhhHHHHhhhhhhHHHHHHHHhh Confidence 1111111111111 11122333333222 1 01111111111 111110000 000000000000 Q ss_pred chhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 499 EFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 499 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.. ...++..- .-.+-.+.. T Consensus 592 ~q~----------------e~~~~~~~-~~~q~e~~k 611 (705) T protein:vir:88 592 EQK----------------EAQPKPED-IKAQADAQR 611 (705) T ss_pred hhh----------------hhhHHHHH-HHHHHHHHH Confidence 000 00000000 000000000 No 122 >protein:vir:100920 Length: 725 # NCBI annotation: Gp1 # Family: family:all:487 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006406;genbank:gi:46358698;genbank:GeneID:2777070 Probab=96.96 E-value=0.00023 Score=40.48 Aligned_cols=472 Identities=9% Similarity=-0.018 Sum_probs=173.0 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMG 108 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G 108 (535) |+|-...|-+...+ ++.++.....+|+.. ..|. .+..=+++ ...+..-..|-+ +|.++++|+.++| T Consensus 1 m~d~~~~~~~~~~~------~~~~~~~~~~~R~~a~~d~~fy---~G~QW~~~-~~~~l~~q~rp~-~N~i~~~v~~v~g 69 (725) T protein:vir:10 1 MADNENRLESILSR------FDADWTASDEARREAKNDLFFS---RVSQWDDW-LSQYTTLQYRGQ-FDVVRPVVRKLVS 69 (725) T ss_pred CCchHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHhh---cCCCCCHH-HHHHHHhcCCCc-ccchHHHHHHHHh Confidence 99866555443322 223333334433322 2233 22222333 333333344545 5999999999999 Q ss_pred hhhcccccccc-C---------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccchHHHHhcc Q lcl|Aclame:pro 109 QVFSRDPIRQL-P---------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTVLEQKLGL 176 (535) Q Consensus 109 ~lF~k~p~~~~-p---------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ad~~~~~ 176 (535) .-=++.+.+.+ | +.|..+++.+ -+-++.+.-...+|..++.+|.+|+=| ||...+..- . ... T Consensus 70 ~e~~nr~d~~v~p~~~~d~~~Ae~l~~~~~~~-~~~~~~~~~~s~Af~~~i~~G~G~~ev~~d~~~~d~~~-~----~~~ 143 (725) T protein:vir:10 70 EMRQNPIDVLYRPKDGASPDAADVLMGMYRTD-MRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTS-N----NQV 143 (725) T ss_pred hHHhCCcceEEecCCcchHHHHHHHHHHHHHH-HHhcCcchHHhHHHHHHhhcCcceeeeeccccCCCCCC-C----cee Confidence 97665555532 2 2233333332 122456666789999999999999654 553221100 0 000 Q ss_pred CCcEEEEechhhh-hcceeeecCCccceeEEEEEEEEe-----------------------ecCCCcccceeeEEEEEee Q lcl|Aclame:pro 177 YRPTITLVHPTSI-INWRTKLVGGKSVISLVVIQENVL-----------------------AQDDGFETTYVQQWRVLQL 232 (535) Q Consensus 177 ~rPy~~~~~~~~I-i~w~~~~~~g~~~Lt~v~l~E~~~-----------------------~~~d~f~~~~~~~~rvl~l 232 (535) .+-+.+..++.+| +||.....+... --|+.+++.+. .....|++....++||.+. T Consensus 144 i~~~~i~~~~~~v~~Dp~a~~~D~sD-ar~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~vrv~E~ 222 (725) T protein:vir:10 144 IRREPIHSACSHVIWDSNSKLMDKSD-ARHCTVIHSMSQNGWDDFAEKYDLDADNIPSFQNPNDWVFPWLTQDTIQIAEF 222 (725) T ss_pred eeeeecccCHhHcccCchhhccChhh-hhhhhhhccCCHHHHHHHHHhCCCcccccccccccccccccccCCCeEEEEEE Confidence 0111111223333 222221111100 00000111000 0000112222233343331 Q ss_pred cCCceEEE--EEEeeecc--CCc------------------c----------------c-cccceeeeccCCCccceeEE Q lcl|Aclame:pro 233 NAEGNYQV--ERWRRETQ--EEM------------------Y----------------Y-SYSKHVPTDGNGNPFKEIPF 273 (535) Q Consensus 233 ~~~g~y~v--~~w~~~~~--~~~------------------~----------------~-~~~~~~~~~~~~~~l~~IP~ 273 (535) |....+ .++..... +.. + + ..+..++.+....+-++||| T Consensus 223 --~~r~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~fP~ 300 (725) T protein:vir:10 223 --YEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPI 300 (725) T ss_pred --EEEEEEeeEEEEeccCCCCceeecchhhhHHHHHHhhcccchhhhhccceeeEEEEEeecchhhhcCCCCCCCCceeE Confidence 100000 01100000 000 0 0 00111111112234466888 Q ss_pred EEeccCC---CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCC Q lcl|Aclame:pro 274 QFIGPLD---NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLP 349 (535) Q Consensus 274 v~~~~~~---~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp 349 (535) |+|.... .+-.....-+.++.+.+.-++...|-+.+++..++.-..... +-.+........+........+..... T Consensus 301 vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~~~~~~~~~ 380 (725) T protein:vir:10 301 VPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDEN 380 (725) T ss_pred EEEEeeeeccCCcceeeeeeccchhHHHHHHHHHHHHHHHHHhcCCccccccHhhhhHHHHHHhccCCceeeeccccccc Confidence 8653221 111111244677888888888888888888765443322222 111100000111111111111111111 Q ss_pred CCC----ccceeecCcchhH---HHHHHHHHHHHHHH-h--hhhhcccccccchHHH-HHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 350 QGA----TAGILQITPNSVP---FEAMTHKESQMIAM-G--ANLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMAF 418 (535) Q Consensus 350 ~~~----~~~~~e~~~~~l~---~~~l~~~e~qm~~l-g--a~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a~ 418 (535) .++ ...+.+ ...+. .+.|+.....|..+ | ..++...+ +.+++.+ .....+....|..+-.|+..+. T Consensus 381 ~g~~~~~~i~~~~--~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~-n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~~ 457 (725) T protein:vir:10 381 NGEMPTQPLAYYE--NPEVPQANAYMLEAATAAVKEVATLGVDAEAVNG-GQVAYDTVNQLNMRADLETYVFQDNLATAM 457 (725) T ss_pred CcccccccCcccC--CCCchHHHHHHHHHHHHHHHHHhCCCHHHhCcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 111 222222 22232 24455444444333 2 23344333 4444433 3333333334455555555554 Q ss_pred H----HHHHHHHHHcCCCC-------CCceeEEEEecc------------------cC--------CccCCHHHHHHHHH Q lcl|Aclame:pro 419 R----KALRWANQFQTGIV-------NDETVEYNLNTD------------------FP--------AARLTPNERAELIL 461 (535) Q Consensus 419 ~----~~lr~~a~~~g~~~-------~~~~~~v~~n~d------------------f~--------~~~~d~~~~~al~~ 461 (535) . .+|.++..+++..- ++..-.+.+|.. |. ......+.+.+|+. T Consensus 458 ~~~g~~lL~lI~~~~~~er~~RI~~edg~~~~v~in~~~~d~~~G~~v~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~~l~q 537 (725) T protein:vir:10 458 RRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRSEILE 537 (725) T ss_pred HHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeEeccccccccccchhhhhccccceeEEEeeccCcHHHHHHHHHHHHH Confidence 4 56777788874321 111111223321 11 11112344556666 Q ss_pred HHhcCC-C-C--HHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 462 EWQQGA-I-T--FKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 462 l~~~G~-i-s--~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +++.-- + + ..++...+ . +.+.-..++...++..+...+.... +.++ ....+.....-.-..++.. T Consensus 538 ll~~~~~~~~~~~~~l~~~~---~-~~d~~~~~e~~erirkq~~~~~~~~--~~~~---e~~q~~~e~qq~~~~q~~~ 606 (725) T protein:vir:10 538 LLGKTPQGTPEYQLLLLQYF---T-LLDGKGVEMMRDYANKQLIQMGVKK--PETP---EEQQWLVEAQQAKQGQQDP 606 (725) T ss_pred HHHhccccchhHHHHHHHHh---h-cCCchhHHHHHHHHHhhhhhhccCC--cccc---chhHHHHHHHHHHHhhhHH Confidence 654411 1 1 01111111 1 1112223555566654432211100 1100 0000000000000111111 No 123 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=96.96 E-value=0.00024 Score=40.44 Aligned_cols=386 Identities=13% Similarity=0.081 Sum_probs=177.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) |...+.-+. ++.+|.. +..|-..+. .... ...+..|.. ...++++|+..+.-++ T Consensus 1 ~~~~D~~~n-------------~~~gg~~-----~~~~~~~~~--~~~~--~~l~a~Y~~----~~l~~~~Vd~~aed~~ 54 (422) T protein:vir:10 1 MVKTDSYAN-------------IFLGGSD-----GSEIYGSLQ--NQAP--TILASLYAD----NALVRRIIDTIPETAL 54 (422) T ss_pred CccchhhHH-------------HHcCCCC-----CccccCccc--ccCH--HHHHHHHHh----ChhhHHHHhhhhHHHh Confidence 765554222 1223432 122322211 1111 122233322 4566778888888888 Q ss_pred ccccccccC---HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC---cccchHHHHhccCCcEEEEec Q lcl|Aclame:pro 112 SRDPIRQLP---PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG---RPVTVLEQKLGLYRPTITLVH 185 (535) Q Consensus 112 ~k~p~~~~p---~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~---~~~t~ad~~~~~~rPy~~~~~ 185 (535) |+...++-. ..++.-++. ..+.+-+..+.+.+..+|.++|++...... .+.+. .+...++..++ T Consensus 55 r~g~~i~~~~~~~~~~~~~~~-----l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~-----~g~~~~l~v~d 124 (422) T protein:vir:10 55 AAGFHIDGIDDEPAFWSRWDD-----LEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVRE-----GAELETVRVYD 124 (422) T ss_pred cCCccccCCCHHHHHHHHHHH-----hhHHHHHHHHHHhhccccceEEEEEecCCCCccccccc-----cCceeeEEeec Confidence 998888532 234333333 467888999999999999999999753211 11111 12334555555 Q ss_pred hhhhhcceeeecCCccceeEEEEEEEEeec-CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccC Q lcl|Aclame:pro 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQ-DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGN 264 (535) Q Consensus 186 ~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~ 264 (535) +.+|.- -+...++ ...|+.-.. |+....+.... .. T Consensus 125 ~~~i~~-----------------~~~~~dp~s~~fg~P~~------------------y~v~~~~~~~~---~~------ 160 (422) T protein:vir:10 125 RTQVKV-----------------QTREENPRNARFGEPLT------------------YRITTNESDMF---YD------ 160 (422) T ss_pred cccccc-----------------hhcccCccccccCcceE------------------EEEecCCCCcc---ee------ Confidence 543310 0011111 122332221 11111111000 00 Q ss_pred CCccceeEEEE----eccCCCcCCCCcchHHHHHHHHHHHHhhHHHH-HHHHHHhcCceeEeeCCCCccchhcc-----C Q lcl|Aclame:pro 265 GNPFKEIPFQF----IGPLDNNADIDHPPLLDLCEVNIGHYRNSADY-EEMAFVAGQPTAFFTGLTKDWVEDVF-----K 334 (535) Q Consensus 265 ~~~l~~IP~v~----~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl-~~~l~~~~~P~~~~~G~~~~~~~d~~-----~ 334 (535) -|+-..|.|.- ..........|.++|..++.=.+..|...+.- ..+++-..+...-+.|+...-..... . T Consensus 161 iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~l~~~~~~~~~~~~~~~ 240 (422) T protein:vir:10 161 VHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAKGLAELCDDSEGFGAARL 240 (422) T ss_pred eccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHhcCCccchHHHHH Confidence 12222333310 01112233467888887664445555444444 45667777777777764321110000 0 Q ss_pred c---ceeeecCcccccC-CCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHH--HH-HHHHHHHHHH Q lcl|Aclame:pro 335 D---FKVHLGSRAIIPL-PQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGE--AQ-QEEASEQSIL 407 (535) Q Consensus 335 ~---~~i~iG~~~~~~l-p~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~--a~-~~~~~~~S~L 407 (535) . ....-|.+..+.+ .++.++..+...-+++. +.++...++|.....-.+..=.+..+++- +. .+...=+..+ T Consensus 241 r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl~-~~~~~~~~~iaaa~~IP~t~L~G~s~~Glnatgd~d~~~yyd~i 319 (422) T protein:vir:10 241 RLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGGID-AFLDKKFDRIVALSGIHEIILKNKNVGGVSSSQNTALETFHKLV 319 (422) T ss_pred HHHHHHHhcCCccceeEecCCcceEEEecccCChH-HHHHHHHHHHHhhhCCCeeeeccCCcccccccchHHHHHHHHHH Confidence 0 0001133333333 44556666666666653 44555556665433322221122222221 11 1223335556 Q ss_pred HHHHH-HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHH-------HHHHHHHHHhcCCCCHHHHHHHHHh Q lcl|Aclame:pro 408 SACTK-NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPN-------ERAELILEWQQGAITFKEMRAGLRR 479 (535) Q Consensus 408 ~~~a~-~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~-------~~~al~~l~~~G~is~et~~~~L~r 479 (535) .++.. .+..+++++++++.+ .++.+|..| ......+.+ .+++...++++|.|+.+..++.|+. T Consensus 320 ~~~Qe~~l~p~l~~l~~~i~~-------s~~~~~~f~--pL~~~sekekaei~~~~a~a~~~~~~~g~i~~~e~r~~L~~ 390 (422) T protein:vir:10 320 DRKRNAELLPILEFLIPFIVN-------AEEWSVEFN--PLAQESSKDKAEILEKNVNSIAALIAAGAMDIDEARDTLRT 390 (422) T ss_pred HHHHHHHHHHHHHHHHHHhcc-------cCCcEEEeC--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhh Confidence 66665 478888888887753 123444433 333332222 2456677899999999999999976 Q ss_pred C----CCCCccCCHHHHHHHHHhchhhcccCCCcCCCC Q lcl|Aclame:pro 480 A----GVASEDDAKAETEGKATVEFIAKTAAAGKVGDA 513 (535) Q Consensus 480 ~----gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~ 513 (535) . ++. ++...+++. .. ...+.+...+.+. T Consensus 391 ~~~~~~~~-~~~~~~~~~-~~----~~~~~~~~~~~~d 422 (422) T protein:vir:10 391 IAPEVKIN-DGSVETEVT-IS----ETSNDPLEVPTDD 422 (422) T ss_pred hcccccCC-CCCCccccc-hh----hcCCCCCCCCCCC Confidence 2 222 222222211 11 1111122222221 No 124 >protein:vir:1785 Length: 555 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:38 # MgeName: P60 # Cross-refs: genbank:acc:NP_570351;genbank:gi:18640510;genbank:GeneID:932723 Probab=96.93 E-value=0.00025 Score=40.31 Aligned_cols=446 Identities=13% Similarity=0.106 Sum_probs=174.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHH---HhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMD---CLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMG 108 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d---~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G 108 (535) |-. ....+|+.+++ .+ ...|++-..-.||..-..+.+.. .. +.. -.|-+...+.++.++. T Consensus 1 m~~---------~~~~r~~~l~~~R~~~--e~~w~e~~~y~lP~~~~~~~~~~--~~---~~~-~~~dst~~~a~~~Laa 63 (555) T protein:vir:17 1 MKH---------SAQAKYMMLRADREDY--LDSGRQSARLTLPYILTDEGHVQ--GG---YLP-TPWQSVGSKGVNVLAS 63 (555) T ss_pred Chh---------HHHHHHHHHHHHhhHH--HHHHHHHHHHhcccccCCCCCcc--cc---ccc-ccccccHHHHHHHHHH Confidence 441 12233333332 22 34455555556775433322211 11 111 1344444455554444 Q ss_pred ----hhhc-ccc--ccccCHH--------------HHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeec Q lcl|Aclame:pro 109 ----QVFS-RDP--IRQLPPA--------------LEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYP 161 (535) Q Consensus 109 ----~lF~-k~p--~~~~p~~--------------l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p 161 (535) .+|. ..| .+.+++. ++.++..|.. ..++++.-+..++.+...+|.+.+++|.+ T Consensus 64 ~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly~~~~ 143 (555) T protein:vir:17 64 KLMLSLFPVNTSFFKLQINDAEIDNLGMDEQARSEIDLSLSRIERIVTQDIAESSDRVHLEMAMKHLIVTGNALLYQGKK 143 (555) T ss_pred HHHHhhcCCCCcccccccCHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEEecCC Confidence 4443 111 1122211 2222222211 13468888888999999999998888632 Q ss_pred CCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCccc------------------ Q lcl|Aclame:pro 162 NVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFET------------------ 221 (535) Q Consensus 162 ~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~~------------------ 221 (535) . +..|+-.+ +-..... .+.+.-|..++.+.... .+|+. T Consensus 144 ~------------------~~~~pl~~---y~v~~d~-~G~vd~v~rk~~~t~~ql~~~fg~~~l~~~~~~~~~~~~d~~ 201 (555) T protein:vir:17 144 N------------------LKLYPLDR---FVVSRDG-EGNVMEIVTEEQIDRSLLPEEFQKVGGLEGAPDSNAVGEDGP 201 (555) T ss_pred c------------------eeEEEcCe---EEEeeCC-CcCeeEEEeeeeecHHHHHHHhhhccccchhhhhhhccccch Confidence 1 12233222 2222222 22333344444433221 22321 Q ss_pred ---------------ceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCC Q lcl|Aclame:pro 222 ---------------TYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADID 286 (535) Q Consensus 222 ---------------~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~ 286 (535) ..++.|.+..+ .++.| .|..+..+.... ....+.+-+.+.+||+.|.. ..+...| T Consensus 202 ~~~~~~~~~~~~~~~~~~~v~t~~~~-~~~~~---~~~~e~~~~~v~----~~l~e~g~~e~P~i~~Rw~~--~~ge~YG 271 (555) T protein:vir:17 202 KMGVTAPGGRDKGKSNDALVYTYVCR-KDGQV---KWHQECDGKVIP----GSNSSAPYTHNPWIPLRFNI--VDGEAYG 271 (555) T ss_pred hhhhhhhcccccCCCcceeEeecccc-cCCee---EEEEecCceecc----ccccccCcccCCeeeeeeee--cCCCccc Confidence 11111111111 11211 111111111100 00112222333444444433 3344567 Q ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCCCCCccceeecC-cchh Q lcl|Aclame:pro 287 HPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQIT-PNSV 364 (535) Q Consensus 287 ~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~-~~~l 364 (535) .+|..+...-...+...+-..-..++.+..|...+. .. ...+..+.-|....+.-......+.++.. +..+ T Consensus 272 rgp~~~~l~D~k~L~~l~~~~l~~~~~~~~pp~lv~~~g-------~~~~~~l~~~~~g~v~~g~~~~v~~~~~~~~~~~ 344 (555) T protein:vir:17 272 RGRVEEFMGDLKSLEALSQAMVEGSAASAKVVFMVSPSA-------TTKPQNLALAANGAIIQGRPDDVSVVQANKAADF 344 (555) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccc-------ccCcceeecCCCceeecCCcccceeeeccccchh Confidence 777766555555555555555566666677765543 11 11222344455444432222345555543 2233 Q ss_pred --HHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCC--CCC Q lcl|Aclame:pro 365 --PFEAMTHKESQMIAMGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGI--VND 435 (535) Q Consensus 365 --~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~--~~~ 435 (535) ..+.+++++..|..+=.-+...+....||++...+.......|.-+-.++. -.+++++.++.+ .|.. ... T Consensus 345 ~~~~~~i~~~~~~I~~aFm~~~~~d~~r~TAtEV~~r~~E~~~~LGpv~~rl~~E~L~Pli~R~~~il~r-~g~lP~~p~ 423 (555) T protein:vir:17 345 RTVLEMIQKLEQRISDAFLMLQVRQSERTTATEVQATVQELNEQIGGIYSNLTTELLQPYLARKLHLLQK-QRKLPQLPK 423 (555) T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCH Confidence 346677777777543211233456678999988776555555555544443 344556666655 3321 111 Q ss_pred ceeEEEEecccCCccCCHHHHHHHHHHH----hcC-------CCCHHHHHHH-HHhCCCCCc-cCCHHHHHHHHHhchh- Q lcl|Aclame:pro 436 ETVEYNLNTDFPAARLTPNERAELILEW----QQG-------AITFKEMRAG-LRRAGVASE-DDAKAETEGKATVEFI- 501 (535) Q Consensus 436 ~~~~v~~n~df~~~~~d~~~~~al~~l~----~~G-------~is~et~~~~-L~r~gvl~~-~~~~eee~~~i~~e~~- 501 (535) +-+.+++...+.... -.+.+..++..+ +.+ .|....+.+. ....||-+. -...+|+.+.+.++.. T Consensus 424 ~~v~~~i~~~l~~l~-r~~~~~~l~~~~~~laq~~~~p~~~d~id~d~~~~~~a~~~Gv~p~~ivrs~eev~~~rq~~~~ 502 (555) T protein:vir:17 424 DLVQPTVVAGLWGVG-RGQDKQQLMEFITTLAQTMGPEIAMKYINPTEFIKRLAAAQGIDTLQLINSPETMKQLGDQQKQ 502 (555) T ss_pred hhhccceeehHHHHH-HHHHHHHHHHHHHHHHhhcCchhHhhcCCHHHHHHHHHHHcCCChhhhcCCHHHHHHHHHHHHH Confidence 222333332221110 112222222221 221 2433444443 344665322 2233444333322110 Q ss_pred -----hcccCCCcCCCCC------CCccc--------ccccccccCCCCCCCC Q lcl|Aclame:pro 502 -----AKTAAAGKVGDAA------SGGTN--------KAKLNNGNGGGNQAGN 535 (535) Q Consensus 502 -----~~~~~~~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~~ 535 (535) .+...+.+..... ...+. ++...-++.-...|+- T Consensus 503 ~~~q~~~~~qa~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~~~~~~ 555 (555) T protein:vir:17 503 DMVQASLINQAGQLAKTPMAEQAMQLIQQQQEGAQDAGAAESETSSAEAQAGA 555 (555) T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHhccccchhhhhHHHHHHhhcCCcccccCC Confidence 0000000000000 00000 0001111111111111 No 125 >protein:vir:94572 Length: 535 # NCBI annotation: Head-to-tail joining protein # Family: family:all:481 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919010;genbank:gi:119637774;genbank:GeneID:5179332 Probab=96.93 E-value=0.00025 Score=40.29 Aligned_cols=453 Identities=11% Similarity=0.093 Sum_probs=179.9 Q ss_pred CCCCCccC-HHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH----H Q lcl|Aclame:pro 32 LPNVGYQR-VEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD----G 105 (535) Q Consensus 32 M~~v~~~h-p~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~----~ 105 (535) |++-..+. =.=.....+|+.+++--.= ...|++-..-.||..-..+.+.+... ..+ .|-+...+.++ + T Consensus 1 ~~~~~~~~~~~~~~~~~r~~~l~~~R~~~e~~w~e~~~y~lP~~~~~~~~~~~~~-----~~~-~~dst~~~a~~~Laa~ 74 (535) T protein:vir:94 1 MASSQKREGFAENGAKAVYDALKNDRNSYETRAENCAKYTIPSLFPKDSDNASTD-----YTT-PWQAVGARGLNNLASK 74 (535) T ss_pred CCchhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccCCCCCCccccc-----cCC-cccccHHHHHHHHHHH Confidence 87322211 1112233445544442110 44566666666775433222221111 111 23333334444 4 Q ss_pred Hhhhhhcccccc--ccCH--------------HHHHHHhccC------CCCCCHHHHHHHHHHHHHhhCcEEEEEeecCC Q lcl|Aclame:pro 106 MMGQVFSRDPIR--QLPP--------------ALEAIVEDID------GEGVSLDQQAKKALGYTMGFGRAAIFTDYPNV 163 (535) Q Consensus 106 l~G~lF~k~p~~--~~p~--------------~l~~l~~d~d------~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~ 163 (535) |.+.+|--.|=+ .+++ .++.+++.|. ...++++.-+..++.+...+|.+.++++-+.. T Consensus 75 l~~~ltP~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~~~~snf~~~~~~~~~~L~~~G~a~l~~~~~~~ 154 (535) T protein:vir:94 75 LMLALFPMQTWMKLTISEFEAKQLVAQPAELAKVEEGLSMVERILMNYIESNSYRVTLFETLKQLVVAGNALLYIPEPEG 154 (535) T ss_pred HHhhhcCCCCccccccChhhhhccccchhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCcEeEeeccCcC Confidence 444444111111 2221 1333433321 13567888888899999999999999975432 Q ss_pred CcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCcc-----------cceeeEEEEE Q lcl|Aclame:pro 164 GRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFE-----------TTYVQQWRVL 230 (535) Q Consensus 164 ~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~-----------~~~~~~~rvl 230 (535) .. ..+..|+-.++ -.... +..++.-|+.++.+..+. ..|. ...++.|.+. T Consensus 155 ~~-------------~~f~~~pl~~y---~v~~d-~~G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~v~~~v 217 (535) T protein:vir:94 155 TY-------------NPMKLYRLSSY---VVQRD-AFGTVLQIVTLDKTAYAALPEDVRNSMDSSQEHKGDEMIDVYTHI 217 (535) T ss_pred cc-------------cceEEEEcCeE---EEeeC-CCCCeEEEEeeeeccHHHhhHHHHHHHHhccccCCCceeEEEEEE Confidence 11 12444554443 22222 233454455566443211 1121 1223333333 Q ss_pred eecCC-ceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 231 QLNAE-GNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 231 ~l~~~-g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) .+... +.|.+..| .++..... .....+-+.+.+||+.|... .+...|..|..+...-...+...+-..-. T Consensus 218 ~~~~~~~~~~~~~e---~~g~~~~~----~~~~~g~~~~P~~~~Rw~~~--~ge~YGrgp~~~~l~D~k~L~~l~~~~l~ 288 (535) T protein:vir:94 218 YLDEESGEYLKYEE---IDGVEVEG----TDASYPVDACPYIPVRMVRI--DGESYGRSYCEEYLGDLRSLENLQEAIVK 288 (535) T ss_pred EeeCCCCcEEEEEE---ecCeeecc----ccccCccccCCceeeeeeec--CCCccccchHHHHHHHHHHHHHHHHHHHH Confidence 34332 33432111 11111000 01112223344444444433 33455666655433333333333333444 Q ss_pred HHHHhcCceeEee--CCCCccchhccCcceeee-cCcccccCCCCCccceeecCc-chh--HHHHHHHHHHHHHH--Hhh Q lcl|Aclame:pro 310 MAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHL-GSRAIIPLPQGATAGILQITP-NSV--PFEAMTHKESQMIA--MGA 381 (535) Q Consensus 310 ~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~i-G~~~~~~lp~~~~~~~~e~~~-~~l--~~~~l~~~e~qm~~--lga 381 (535) ....+..|.+.+. |.. .+..+.- |++.++. ....+.++++... ..+ ..+.++++++++.. +-. T Consensus 289 ~~~~a~~~~~lv~p~g~~--------~~~~~~~~~~g~~v~-g~~~~v~~~~~~~~~~~~~~~~~i~~~~~rI~~af~~~ 359 (535) T protein:vir:94 289 MSMISAKVIGLVNPAGIT--------QVRRLTKAQTGDFVS-GRPEDISFLQLEKAADFSVARAVSEQIEGRLSYAFMLN 359 (535) T ss_pred HHHHhccCCccccccccc--------chhhcccCCCceeec-CCcccceeeecccccchhHHHHHHHHHHHHHHHHHhHh Confidence 4444445544432 221 1222322 3333332 1122334444432 223 34667788877754 222 Q ss_pred hhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCceeEEEEecccCCccC--- Q lcl|Aclame:pro 382 NLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGI--VNDETVEYNLNTDFPAARL--- 451 (535) Q Consensus 382 ~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~--~~~~~~~v~~n~df~~~~~--- 451 (535) .+...+....||++...+..-....|.-+-.++. -.+++++.++-+ .|.. ...+-+ +.+|.+ .+ T Consensus 360 ~~~~~d~~rvTAtEV~~r~~E~~~~LGpv~~rl~~ElL~Pli~r~~~il~r-~g~lP~~p~~~v----~~~~vs-~la~l 433 (535) T protein:vir:94 360 SAVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQLPMVRVLLKQLQA-TNQIPELPKEAV----EPTIST-GMEAL 433 (535) T ss_pred hhccCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCChhhc----cceEee-hHHHH Confidence 2233455668999998766555455555444433 233555555543 2321 122222 333322 11 Q ss_pred -CHHHHHHHHHHHh--c-------C-CCCHHHHHHHHH-hCCCCCc-cC-CHHHHHHHHHhchh------hcccCCCcCC Q lcl|Aclame:pro 452 -TPNERAELILEWQ--Q-------G-AITFKEMRAGLR-RAGVASE-DD-AKAETEGKATVEFI------AKTAAAGKVG 511 (535) Q Consensus 452 -d~~~~~al~~l~~--~-------G-~is~et~~~~L~-r~gvl~~-~~-~~eee~~~i~~e~~------~~~~~~~~~~ 511 (535) -.++++.++...+ + . .|....+.+.+. ..||-.. -. +.+|..... ++.. .....++... T Consensus 434 ~r~~~~~~l~~~~~~laq~~P~~ld~~id~d~~~~~~a~~~Gvp~~~i~rs~eev~~~~-~q~~~~~~~~~~~~~~g~~~ 512 (535) T protein:vir:94 434 GRGQDLDKLERCIAAWSALAPMQGDPDINIATIKLRIANAIGIDTSGILKTPEEKQQEM-AEAAQGTAMQNAAASAGAGA 512 (535) T ss_pred HHHHHHHHHHHHHHHHHhhChHHhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhh Confidence 1233333333222 1 1 244444455443 3554323 22 344433222 2211 1111111111 Q ss_pred CC--CCCcccccccccccCCCCC Q lcl|Aclame:pro 512 DA--ASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 512 ~~--~~~~~~~~~~~~~~~~~~~ 532 (535) .+ ..+..+.+..-+..|-.|- T Consensus 513 ~~~~~~~~~~~~~~~~~~g~~~~ 535 (535) T protein:vir:94 513 GTMATASPENMKAAAAQAGMAPN 535 (535) T ss_pred hcccccChHHHHHHHHHhccCCC Confidence 11 1111111111222333333 No 126 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=96.92 E-value=0.00026 Score=40.25 Aligned_cols=405 Identities=13% Similarity=0.065 Sum_probs=182.0 Q ss_pred hhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCC-CCChhhHHHHHHHH Q lcl|Aclame:pro 12 VQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVD-SRDEEQRRRYETYL 90 (535) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~-~~~~E~~~~Y~~rl 90 (535) ..+.++-|+--|-. .+ ...+........+...-|.+.+ ..++|..... +.-..+-..|+... T Consensus 1 ~~~~i~~~~g~~~~------~~---~~~~~~~~~ia~~~~~~~~~~~--------~~~~p~~~~il~~~~~~~~~y~~m~ 63 (491) T protein:vir:79 1 MSKGLWVSPTEFVK------FG---EPDKSLSSQIATRARSIDFFAL--------GMYLPNPDPVLKALGKDIRVYRELR 63 (491) T ss_pred CCCeeeCCCCCccc------cc---ccchhHHHHHhhhccccccccc--------cccCcchhHHHhhccCCHHHHHHHh Confidence 23334434333311 01 1111222222222222222211 1122221100 00001123566654 Q ss_pred hhhccchhHHHHHHHHhhhhhcccccccc---CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCccc Q lcl|Aclame:pro 91 QRAIFYNVTARTLDGMMGQVFSRDPIRQL---PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPV 167 (535) Q Consensus 91 ~rA~~~n~~~~tv~~l~G~lF~k~p~~~~---p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~ 167 (535) . -.++...++.....|.+.+..++- .+....++..+ .++.+++.++..++. ++.+|.+.+=+- T Consensus 64 ~----D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~a~~i~e~-l~~~~~~~~i~~~ld-a~~~G~s~~Ei~-------- 129 (491) T protein:vir:79 64 A----DAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADV-FADLDLSRIATEMLD-AVLYGYQPMEIT-------- 129 (491) T ss_pred h----ChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHH-HhcCCHHHHHHHHHH-hhhhcceeEEEE-------- Confidence 2 456666666666666666666642 22222222221 223478888888764 777887665332 Q ss_pred chHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeec Q lcl|Aclame:pro 168 TVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRET 247 (535) Q Consensus 168 t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~ 247 (535) |+.+ +|.-.+..+..+ +...|. .+.++..+ ++.. T Consensus 130 ------------------------w~~~--~g~~~~~~l~~r-----~~~~f~-----------~d~~~~l~---l~~~- 163 (491) T protein:vir:79 130 ------------------------WGKV--GNYIVPIDVVGK-----PADWFV-----------YDPENQLR---FRSK- 163 (491) T ss_pred ------------------------Eeec--CCeeeEEeeeee-----ccccee-----------eccCCceE---Eeec- Confidence 2211 222112111111 111111 01111111 1100 Q ss_pred cCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCc Q lcl|Aclame:pro 248 QEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKD 327 (535) Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~ 327 (535) +.. ...++. .+.++|=+ .+....+...+.+.|..++..-+---....+...-++.-|.|+++.+-.... T Consensus 164 -~~~----~~g~~l----p~~k~i~~--~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~~a 232 (491) T protein:vir:79 164 -EHW----VQGEEL----PARKFLVP--RQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRSA 232 (491) T ss_pred -CCC----CCceee----cCCCeEEE--EecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCCC Confidence 000 000111 12333322 2323334455666666666544443445667777788889999888843322 Q ss_pred cchhc--cCcceeeecCcccccCCCCCccceeecCcchh---HH-HHHHHHHHHHHH--HhhhhhcccccccchHHHHHH Q lcl|Aclame:pro 328 WVEDV--FKDFKVHLGSRAIIPLPQGATAGILQITPNSV---PF-EAMTHKESQMIA--MGANLLVKSGGNRTFGEAQQE 399 (535) Q Consensus 328 ~~~d~--~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l---~~-~~l~~~e~qm~~--lga~~l~~~~~~~ta~~a~~~ 399 (535) ..++. +...--.+|..++..+|.+.+..|+|..+.+. .+ +.++...++|.. ||--+....+ .|-..+... T Consensus 233 ~~~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~--gs~a~~~vh 310 (491) T protein:vir:79 233 SDAETNLLLDRLEDMVQDAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLGQNQTTEAT--STRASAQAG 310 (491) T ss_pred CHHHHHHHHHHHHHHhcCeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhhhhhccCcc--cchhhHHHH Confidence 22221 12222347888999999999999999875332 23 445555566544 4443333322 222233344 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCc-cCCHHHHHHHHHHHhcCC-CCHHHHHHHH Q lcl|Aclame:pro 400 EASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAA-RLTPNERAELILEWQQGA-ITFKEMRAGL 477 (535) Q Consensus 400 ~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~-~~d~~~~~al~~l~~~G~-is~et~~~~L 477 (535) .......+.+.+..++++++++++++..|.+.. .....|.+ ... ..+...++.+.++.+.|. ++.+.+. T Consensus 311 ~~v~~~i~~~D~~~i~~tln~li~~l~~~N~~~--~~~p~f~~----~e~ee~~~~~a~~~~~L~~~G~~i~~~~~~--- 381 (491) T protein:vir:79 311 LEVTDDIRDGDKAIVVEAMNMLIRWICDLNFDG--AARPVFDM----WEQEQVDEIQAGRDEKLTRAGARFTPAYFK--- 381 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcceEee----cCcCchhHHHHHHHHHHHhCCCccCHHHHH--- Confidence 555567788899999999999999999988742 22333332 222 222334566778888887 6655443 Q ss_pred HhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 478 RRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 478 ~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ++.|+-.+... ++. .+...+.....+ ..+....++... T Consensus 382 e~~Gip~~~~~-e~~----------~~~~~~~~~~~~---------~~~~~~~~~~~~ 419 (491) T protein:vir:79 382 RAYNLQDGDLD-ERP----------LPVSAVDAVGAA---------SFAEFEAPDQDA 419 (491) T ss_pred HHhCCCCCCCC-ccc----------cCcCcccccccc---------cccccCCCCCcc Confidence 45565332211 111 011111110000 001111111222 No 127 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=96.83 E-value=0.00031 Score=39.83 Aligned_cols=397 Identities=11% Similarity=0.037 Sum_probs=170.5 Q ss_pred CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccc Q lcl|Aclame:pro 35 VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRD 114 (535) Q Consensus 35 v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~ 114 (535) +...+.+-. .++++|.. .|..|-+- ..... -+.+..|.. ....+.+|+..+.-+.++. T Consensus 1 ~~~~~~d~~---------~~~~~~~~----~~~~~~~~---~~~~~--~~l~a~Y~~----~~l~~~~Vd~~aed~~r~g 58 (427) T protein:vir:10 1 MKIVKHDGY---------NDIFNGGA----DGSPKPFF---MSDAS--YHVGSFYND----NATAKRIVDVIPEEMVTAG 58 (427) T ss_pred CCccccchH---------HHHhhcCC----CCcccCcc---ccCch--HHHHHHHHc----CchhhhhhccchHHhhcCC Confidence 333333222 12344421 12223211 11111 112233333 3456777888888888888 Q ss_pred cccccCH---HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhc Q lcl|Aclame:pro 115 PIRQLPP---ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIIN 191 (535) Q Consensus 115 p~~~~p~---~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~ 191 (535) ..++-++ .++..++. ..+.+-++.+.+.+..+|.++|++....... .+. .-...+...++..+++.+|.- T Consensus 59 ~~i~g~~~~~~~~~~~~~-----l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~-l~~-p~~~~g~l~~l~v~d~~~~~~ 131 (427) T protein:vir:10 59 FKMSGVKDEKEFKSLWDS-----YKLDSSLVDLLCWARLYGGAAMVAIIKDNRM-LTS-QAKPGAKLEGVRVYDRFAITV 131 (427) T ss_pred ccccCccHHHHHHHHHHH-----hhHHHHHHHHHHhccccceeEEEEEecCCCc-ccc-ccCCCcceeEEEEechhcccc Confidence 8886443 34444443 3678889999999999999999986432111 000 000112233555555533310 Q ss_pred ceeeecCCccceeEEEEEEEEeec-CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccce Q lcl|Aclame:pro 192 WRTKLVGGKSVISLVVIQENVLAQ-DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKE 270 (535) Q Consensus 192 w~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~ 270 (535) -+...++ ...|+... .|+........ ... -|+-.. T Consensus 132 -----------------~~~~~dp~s~~fg~P~------------------~y~v~~~~~~~----~~~-----iH~SRl 167 (427) T protein:vir:10 132 -----------------EKRVTNARSPRYGEPE------------------IYKVSPGDNMQ----PYL-----IHHSRV 167 (427) T ss_pred -----------------cccccCccccccCcce------------------EEEEecCCCCc----ceE-----EccccE Confidence 0111111 12233222 12111111000 000 022222 Q ss_pred eEEE----EeccCCCcCCCCcchHHHHHHHHHHHH-hhHHHHHHHHHHhcCceeEeeCCCCc----cchhc-cCcc---e Q lcl|Aclame:pro 271 IPFQ----FIGPLDNNADIDHPPLLDLCEVNIGHY-RNSADYEEMAFVAGQPTAFFTGLTKD----WVEDV-FKDF---K 337 (535) Q Consensus 271 IP~v----~~~~~~~~~~~~~ppL~dLA~ln~~hy-~~~sdl~~~l~~~~~P~~~~~G~~~~----~~~d~-~~~~---~ 337 (535) |.|. +.........++.++|.....=.+..| +...--..+++-..+...-+.|+... ..... .... . T Consensus 168 i~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~l~~~~~~~~~~~~~~~r~~~~~ 247 (427) T protein:vir:10 168 FIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKGLAEMCDDDDAQYAARLRLAQVD 247 (427) T ss_pred EEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhcCccchHHHHHHHHHHH Confidence 3221 011122334567787766433334445 33344456677777777777665321 10000 0000 0 Q ss_pred eeecCcccccC-CCCCccceeecCcchhHHHHHHHHHHHHHHHhhhhhcccccccchHHH---HHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 338 VHLGSRAIIPL-PQGATAGILQITPNSVPFEAMTHKESQMIAMGANLLVKSGGNRTFGEA---QQEEASEQSILSACTK- 412 (535) Q Consensus 338 i~iG~~~~~~l-p~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~l~~~~~~~ta~~a---~~~~~~~~S~L~~~a~- 412 (535) -.-|.+..+.+ .++.++..+...-+++. ..+....++|+....-.+..=.+..+++-. ..+...=+..+.++.. T Consensus 248 ~~~~~~~~~~l~~~~e~~e~~~~~lsgl~-~~~~~~~~~iaaa~~IP~t~L~G~sp~Glnstgd~D~~nyyd~i~~~Qe~ 326 (427) T protein:vir:10 248 DNSGVGRAIGIDAETEEYDVLNSDISGVP-EFLSSKMDRIVSLSGIHEIIIKNKNVGGVSASQNTALETFYKLVDRKREE 326 (427) T ss_pred HhcCcccceeeecCCCceeEEecccCChH-HHHHHHHHHHHhhhCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHH Confidence 01133333443 34455555554445543 445555556654333222211222222211 1122333445566553 Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHH-------HHHHHHHHhcCCCCHHHHHHHHHhCCCCCc Q lcl|Aclame:pro 413 NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNE-------RAELILEWQQGAITFKEMRAGLRRAGVASE 485 (535) Q Consensus 413 ~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~-------~~al~~l~~~G~is~et~~~~L~r~gvl~~ 485 (535) .+..+++++++++.+ + .+.+|..| ......+.+. +++...++++|.|+.++.+++|+..+.... T Consensus 327 ~l~p~l~~l~~~i~~------s-~~~~~~f~--pL~~~s~kEkaei~~~~a~a~~~~~~~gvi~~~e~r~~L~~~~~~~~ 397 (427) T protein:vir:10 327 DYRPLLEFLLPFIVD------E-EEWSIEFE--PLSVPSKKEESEITKNNVESVTKAITEQIIDLEEARDTLRSIAPEFK 397 (427) T ss_pred HHHHHHHHHHHHhhc------C-CCcEEEeC--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhhcccc Confidence 467778888887642 1 23444433 3333322222 356677899999999999999976433322 Q ss_pred cCCHHHHH-HHHHhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 486 DDAKAETE-GKATVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 486 ~~~~eee~-~~i~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) .....++. ++.+++ .+.+++.+ .+.++.+ T Consensus 398 ~~~~~~~~~e~~~~~-~e~~p~~~-------e~~~d~~ 427 (427) T protein:vir:10 398 LKDGNNINIREPEET-TEPEPGLG-------EKLEDEN 427 (427) T ss_pred CCCCccccccccchh-cCCCCCCC-------CCCCCCC Confidence 11111111 011111 11111111 1111111 No 128 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=96.76 E-value=0.00036 Score=39.48 Aligned_cols=387 Identities=14% Similarity=0.105 Sum_probs=174.5 Q ss_pred CCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChh-hHHHHHHHHhhhccchhHHHHHHHHhhhhhcc Q lcl|Aclame:pro 35 VGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEE-QRRRYETYLQRAIFYNVTARTLDGMMGQVFSR 113 (535) Q Consensus 35 v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E-~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k 113 (535) |+ +|....-..-=..++|.+.+ +. +.-++|.+........ .-..|+..+. -.++...++.....|.+. T Consensus 1 v~--~~~l~~e~at~~~~~d~~~~---~~--~~l~~~~~~il~~a~~g~~~~y~~l~~----D~~i~s~l~~rk~av~~~ 69 (488) T protein:vir:99 1 ME--KPALGREIATSGDGRDITRP---FI--SGLQVPNDSILQRRGGNDLRVYEEILS----DAQVKTVWGQRQLAVVSR 69 (488) T ss_pred CC--ccchhHHHHHHHhhhhhhcc---cc--CCCCCCChHHHHhhccCCHHHHHHHhh----ChHHHHHHHHHHHHHhcC Confidence 22 12211111111111222111 00 0112222111100000 0134554432 457777788888888888 Q ss_pred ccccccCH------HHHH-HHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEech Q lcl|Aclame:pro 114 DPIRQLPP------ALEA-IVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHP 186 (535) Q Consensus 114 ~p~~~~p~------~l~~-l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~ 186 (535) ++.+.-+. .+.. +.+.+ .+.+++.++..++. ++.+|.+.+=+-| T Consensus 70 ~w~i~p~~~~~~~~~~ae~v~~~l--~~~~~~~~l~~~ld-a~~~G~s~~Ei~w-------------------------- 120 (488) T protein:vir:99 70 EWKVEAGGDRPIDQAAAEHLEQQL--QRVGWDRVTSKMLF-GVFYGYAVSELIY-------------------------- 120 (488) T ss_pred CceEEcCCCChHHHHHHHHHHHHH--hCCCHHHHHHHHHh-hhhhcceeEEEEE-------------------------- Confidence 87774211 1222 22222 23578999988874 7778876654322 Q ss_pred hhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCC Q lcl|Aclame:pro 187 TSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN 266 (535) Q Consensus 187 ~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 266 (535) +.+ +|.-.+..+..+ +...| ..+.++.. ++....... .+. T Consensus 121 ------~~~--~g~~~~~~l~~r-----~~~~f-----------~~d~~~~l--~~~~~~~~~--------------~g~ 160 (488) T protein:vir:99 121 ------GRD--DRYITLEAIKVR-----NRRRF-----------RYDQDGGL--RLLTPNNMF--------------EGE 160 (488) T ss_pred ------eec--CCeeeEeeeeee-----cccce-----------eecCCCce--EEeccCCCC--------------Ccc Confidence 211 221111111111 10011 00111111 111110000 011 Q ss_pred ccceeEE--EE-eccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCC-Cccc--hhccCcceeee Q lcl|Aclame:pro 267 PFKEIPF--QF-IGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLT-KDWV--EDVFKDFKVHL 340 (535) Q Consensus 267 ~l~~IP~--v~-~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~-~~~~--~d~~~~~~i~i 340 (535) ++. .|+ ++ .+....+...+.+.|..++..-+--.....+...-++.-|.|+++.+-.. .... ...+...-..+ T Consensus 161 ~lp-~~~~~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek~~l~~av~~~ 239 (488) T protein:vir:99 161 PCP-APYFWHFSTGADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDKAKLLAALHAI 239 (488) T ss_pred ccc-cCceEEEEeecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHHHHHHHHHHHH Confidence 111 122 22 23333444556666666665543333456667777888899999887432 1111 12222222446 Q ss_pred cCcccccCCCCCccceeecCcchhH--HHHHHHHHHHHHH--HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 341 GSRAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIA--MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSM 416 (535) Q Consensus 341 G~~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~--lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~ 416 (535) |+.++..+|.+.+..|++..+.+.. ...++...++|.. +|. ++....+..+-..+..........+.+.+..+++ T Consensus 240 ~~~~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~iLGq-tlts~~~~Gs~a~~~vh~~v~~d~~~aDa~~i~~ 318 (488) T protein:vir:99 240 QTDSAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKVGLGQ-VASTQGTPGRLGNDDLQADVRLDLVKADADLICE 318 (488) T ss_pred hcCcEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHHHhhh-hhcccccccchhhHHHHHHHHHHHHHHHHHHHHH Confidence 8899999999999999998665443 3455666666644 343 3432222223233344455557778889999999 Q ss_pred HHH-HHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhc-CC-CCHHHHHHHHHhCCCCCccCCHHHHH Q lcl|Aclame:pro 417 AFR-KALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQ-GA-ITFKEMRAGLRRAGVASEDDAKAETE 493 (535) Q Consensus 417 a~~-~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~-G~-is~et~~~~L~r~gvl~~~~~~eee~ 493 (535) +++ +++++++.|-.... ....+++ ++.........++.+.++++. |. |+.+.+. ++.|+-.+.. .++. T Consensus 319 tln~~li~~l~~~N~~~~--~~p~~~~--~~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~---e~~Gip~~~~-~~~~- 389 (488) T protein:vir:99 319 SFNLGPARWLTEWNFPGA--QPPRVYR--VIEEPEDITAKAERDEKVFRMSGFRPTRGYVQ---ETYGVEVEST-QAEA- 389 (488) T ss_pred HHHHHHHHHHHHhCcCCc--CCceeEe--cCCCcccHHHHHHHHHHHHhhcCCCCCHHHHH---HHcCCCCccc-cccc- Confidence 997 58998888864321 1122332 232222223456667778774 65 6655433 4556532221 1100 Q ss_pred HHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 494 GKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 494 ~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +++.+.. ..+.+..+...+ T Consensus 390 ------------~~~~~~~-----------~~~~~~~~~~~~ 408 (488) T protein:vir:99 390 ------------TAPTPST-----------EFAEGDQPSDPA 408 (488) T ss_pred ------------ccCCCcc-----------cCCCCCCCCCch Confidence 0000000 011111111111 No 129 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=96.74 E-value=0.00037 Score=39.38 Aligned_cols=405 Identities=13% Similarity=0.082 Sum_probs=185.9 Q ss_pred hhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCC-CCChhhHHHHHHHH Q lcl|Aclame:pro 12 VQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVD-SRDEEQRRRYETYL 90 (535) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~-~~~~E~~~~Y~~rl 90 (535) ..+.++-|+--|.. |+... -|........ ....|..+ +..++|++... +.-.-+-..|+... T Consensus 1 m~~~i~~~~g~p~~------~~~~~--~~~~~~ia~~-~~~~~~~~--------~~~~~~~~~~iLr~~~~~~~~y~~m~ 63 (491) T protein:vir:10 1 MSKGLWVSPTEFVT------FGEPD--KSLSSQIATR-ARSIDFFA--------LGMYLPNPDPVLKALGKDIRVYRELR 63 (491) T ss_pred CCCceeCCCCCccC------cccCC--hHHHHHHHhh-hccccccc--------ccCCccchHHHHHhcCCCHHHHHHHh Confidence 33444545444422 33211 1221111110 00001111 11122222110 00001234566654 Q ss_pred hhhccchhHHHHHHHHhhhhhcccccccc---CHHH-HHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcc Q lcl|Aclame:pro 91 QRAIFYNVTARTLDGMMGQVFSRDPIRQL---PPAL-EAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRP 166 (535) Q Consensus 91 ~rA~~~n~~~~tv~~l~G~lF~k~p~~~~---p~~l-~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~ 166 (535) + -.++...++.....+.+.+..++- .+.. +.+.+.+ .+.+++.++..++ .++.+|.+.+=+- T Consensus 64 -~---D~~i~s~l~~Rk~av~~~~w~i~~~~~~~~~~e~v~e~l--~~~~~~~~l~~~l-da~~~G~s~~Ei~------- 129 (491) T protein:vir:10 64 -A---DAHVGGCVRRRKAAVKALEWGLDRGKAKSRVAKSIADVF--ADLDLSRIVTEML-DAVLYGYQPMEIT------- 129 (491) T ss_pred -h---ChHHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHHH--hcCCHHHHHHHHH-HhhhhcceeEEEE------- Confidence 2 567777777777777777777742 2222 2233322 2357899998887 5777886655332 Q ss_pred cchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeee Q lcl|Aclame:pro 167 VTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRE 246 (535) Q Consensus 167 ~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~ 246 (535) |+.+ +|.-.+..+..+ +...|. .+.++..+ ++.. T Consensus 130 -------------------------w~~~--~g~~~~~~l~~r-----~~~~f~-----------~d~~~~l~---~~~~ 163 (491) T protein:vir:10 130 -------------------------WGKV--GNYIVPIDVVGK-----PADWFV-----------YDPENQLR---FRSK 163 (491) T ss_pred -------------------------Eeec--CCeeEEEEeeee-----ccccee-----------eccCCceE---EecC Confidence 2221 221112111111 111111 01111111 1100 Q ss_pred ccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCC Q lcl|Aclame:pro 247 TQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTK 326 (535) Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~ 326 (535) +.. ...++. .+.++|=+ .+....+...+.+.|..++..-+--.....+...-++.-+.|+++.+-... T Consensus 164 --~~~----~~g~~l----~~~k~i~~--~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~ 231 (491) T protein:vir:10 164 --DHW----MQGEEL----PARKFLVP--RQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRS 231 (491) T ss_pred --CCC----CCccee----cCCCEEEE--EecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC Confidence 000 000010 12333322 233333445566666666655554445666777778888999999885333 Q ss_pred ccchh--ccCcceeeecCcccccCCCCCccceeecCcchh---HH-HHHHHHHHHHHH--HhhhhhcccccccchHHHHH Q lcl|Aclame:pro 327 DWVED--VFKDFKVHLGSRAIIPLPQGATAGILQITPNSV---PF-EAMTHKESQMIA--MGANLLVKSGGNRTFGEAQQ 398 (535) Q Consensus 327 ~~~~d--~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l---~~-~~l~~~e~qm~~--lga~~l~~~~~~~ta~~a~~ 398 (535) ...++ .+...--.+|.+++..+|.+.+..|++..+.+. .+ +.++...++|.. +|--+....+ .+-..+.. T Consensus 232 a~~~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqtlTt~~~--gs~a~~~v 309 (491) T protein:vir:10 232 ASDGEKNLLLDCLEDMVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQNQTTEAT--STRASAQA 309 (491) T ss_pred CCHHHHHHHHHHHHHHhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhhhcccCcc--cchhHHHH Confidence 22222 222222447888999999999999999876432 23 445555566644 4543333222 22233334 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCC-CCHHHHHHHH Q lcl|Aclame:pro 399 EEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGA-ITFKEMRAGL 477 (535) Q Consensus 399 ~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~-is~et~~~~L 477 (535) ........+.+.+..+++++++++++++.|.+... ....|.+.. ....+...++.+.++.+.|. ++.+.+. T Consensus 310 h~~v~~di~~~D~~~i~~tln~li~~l~~~N~~~~--~~p~f~~~~---~~e~~~~~a~~~~~L~~~G~~i~~~~i~--- 381 (491) T protein:vir:10 310 GLEVTDDIRDGDKAVVSEAMNMLIRWICDLNFDGA--DRPVFDMWE---QEQVDEIQAGRDQKLTQAGARFTPAYFK--- 381 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CcceEEecC---cCchhHHHHHHHHHHHhCCCcCCHHHHH--- Confidence 44555667888899999999999999999886432 233444322 12223445666778888887 6655433 Q ss_pred HhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 478 RRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 478 ~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ++.|+-.+....+ . .+..++....+. ..... ..+.+.. T Consensus 382 e~~Gip~~~~~~~-----~------~~~~~~~~~~~~-------~~~~~--~~~~~~~ 419 (491) T protein:vir:10 382 RAYNLQDGDLDER-----P------LPVSAVDTVGAA-------SFAEF--EAPDQDA 419 (491) T ss_pred HHhCCCCCCcCcc-----c------cccCCCCCcccc-------ccccc--CCCCCCc Confidence 4556532222110 0 010111000000 00000 0011111 No 130 >protein:vir:103765 Length: 549 # NCBI annotation: hypothetical protein # Family: family:all:481 # MgeID: mge:1645 # MgeName: BcepC6B # Cross-refs: genbank:acc:YP_024925;genbank:gi:48697195;genbank:GeneID:2846089 Probab=96.69 E-value=0.00041 Score=39.18 Aligned_cols=456 Identities=11% Similarity=0.035 Sum_probs=181.0 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCC----CChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDS----RDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~----~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) |.+ ++ ..-..+...+|+.++.--.= +..|++-..--||....+. .+......+..+.--++=.-.+.....+| T Consensus 1 m~~-d~-~~~~~~l~~r~~~l~~~R~~~e~~w~e~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~dstg~~a~~~LAs~l 78 (549) T protein:vir:10 1 MTN-DD-AKILQALNADHGRMKEKRQSYEAVWNDVIDYLMPRLDKFGQLPRPDSEKGRERSQKMFDSTAPLALRNFVAAM 78 (549) T ss_pred CCc-ch-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccccccccCCCCCCcccccccccccchHHHHHHHHHHHH Confidence 774 22 22222223333333221110 3345555555567542221 01111111211211222222333334444 Q ss_pred hhhhhcc-cc--ccccCH-------HHHHHHhcc--------CCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccc Q lcl|Aclame:pro 107 MGQVFSR-DP--IRQLPP-------ALEAIVEDI--------DGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVT 168 (535) Q Consensus 107 ~G~lF~k-~p--~~~~p~-------~l~~l~~d~--------d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t 168 (535) .+.+|.- .| .+.+.+ ..+.+++.+ .....+++.-+..++.+...+|.+.+++|...... T Consensus 79 ~~~ltpp~~~wF~l~~~~~~~~e~~~v~~~l~~ve~~~~~~~~~~~snf~~~~~~~~~~L~~~Gta~l~~~~~~~~~--- 155 (549) T protein:vir:10 79 DSMITPATQLWHRLKTGNDALNEIASVKAYLQGVVRTLFAARYRWQGGFVTQMGATYQSIGLFGPGALMIEHDVGKG--- 155 (549) T ss_pred HhhccCCCCccccccCCccchhhhhHHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHHhhcceeeEEeecCCCe--- Confidence 4555431 11 122211 122333322 12346788888889999999999999998432211 Q ss_pred hHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCccc----------------ceeeEEEEE Q lcl|Aclame:pro 169 VLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFET----------------TYVQQWRVL 230 (535) Q Consensus 169 ~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~----------------~~~~~~rvl 230 (535) -.+..|+-.++. ........+.+ |.-++.+.-. ...|+. +.++-|-+. T Consensus 156 ----------~~f~~~pl~~~~---v~~d~~G~vd~-i~r~~~~t~~ql~~~fg~~~l~~~v~~~~~~~~~~~~~v~~~V 221 (549) T protein:vir:10 156 ----------IVYRNVPMQRLW---FAENNSGLIDK-THVQWELTLRQAAQRFGRENLSPSMQSTLEKDPEKSAIFYHAV 221 (549) T ss_pred ----------eEEEEEEcCeEE---EeeCCCCCeEE-EEEEeecCHHHHHHhcCcccCCHHHHHHhhcCCCceEEEEEEe Confidence 234445555542 22222223333 2222211110 012221 223333333 Q ss_pred eecCCce----------EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHH Q lcl|Aclame:pro 231 QLNAEGN----------YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGH 300 (535) Q Consensus 231 ~l~~~g~----------y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~h 300 (535) ++..++. |. .+|..+. ...+..++|=+.+.+||+.|....+ ...|.+|..+...-...+ T Consensus 222 ~pr~~~~~~~~~~~~~pf~-sv~~e~~--------~~~il~esg~~e~P~~~~Rw~~~~g--e~YGrgp~~~~l~D~k~L 290 (549) T protein:vir:10 222 EPRADRDPRKLDGRNMQFA-SYWLDEG--------RDRIVQNSGFRTFPFAIGRFYVGTD--DVYGGSPAYDAMPDVRMA 290 (549) T ss_pred ecCCCCCccccccccCceE-EEEEEec--------CCEeeccCCcccCCcceeeeeecCC--CccccchHHHHHHHHHHH Confidence 3322211 11 1222211 1122333333455566666654333 455667766555555555 Q ss_pred HhhHHHHHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCc--cceeecCcc-hhHHHHHHHHHHH Q lcl|Aclame:pro 301 YRNSADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGAT--AGILQITPN-SVPFEAMTHKESQ 375 (535) Q Consensus 301 y~~~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~--~~~~e~~~~-~l~~~~l~~~e~q 375 (535) ...+-.+-..++.+..|...+. |... +..+.-|.........+++ +..++..+. ....+.+++++++ T Consensus 291 ~~l~~~~l~~~~~~~~p~~~v~~~g~~~--------~~~l~pgg~~~~~~~~~~~~~~~pl~~~~~~~~~~~~i~~~~~r 362 (549) T protein:vir:10 291 NDMAKTNIRGAQKLVDPPLLANEDGVLD--------GFDLRSGALNWGGLNDKGEEMVKPLLTGKQAQIGIEFAQDTRQT 362 (549) T ss_pred HHHHHHHHHHHHHHhcCceeeccccccc--------cceeccCCccccccCCCCccceeeeccccchhHHHHHHHHHHHH Confidence 5555566667777777777754 2211 1122233333332222223 333332221 2234567777777 Q ss_pred HHHH-hhh-h-hcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCCC-Ccee---EEEEe Q lcl|Aclame:pro 376 MIAM-GAN-L-LVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGIVN-DETV---EYNLN 443 (535) Q Consensus 376 m~~l-ga~-~-l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~~~-~~~~---~v~~n 443 (535) +... -+. + ...+....||++...+.......|.-+-.++. -.+++++.++.+ .|.... +.+. .+.++ T Consensus 363 I~~af~~d~~~~~~~~~~~TAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~R~~~il~r-~g~lP~~p~~l~~~~~~~~ 441 (549) T protein:vir:10 363 INQWFYVTLFQILVDSGDMTATEVLQRAQEKGVLLAPTLGRTQSELLGPMIAREVDILAE-AGQLPDMPQELIDAGADVD 441 (549) T ss_pred HHHHHhhhhhhhhcCCCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCChhhhcCCceeE Confidence 7552 111 1 23356678999998766554445554444443 334566666555 333111 1111 23344 Q ss_pred cccCCccC---CHHHHHHHHHHH-------hcC-----CCCHHHHHHHH-HhCCCCCccCCHHHHHHHHHhch-----hh Q lcl|Aclame:pro 444 TDFPAARL---TPNERAELILEW-------QQG-----AITFKEMRAGL-RRAGVASEDDAKAETEGKATVEF-----IA 502 (535) Q Consensus 444 ~df~~~~~---d~~~~~al~~l~-------~~G-----~is~et~~~~L-~r~gvl~~~~~~eee~~~i~~e~-----~~ 502 (535) -+|...-. ..+.+.++.... +.+ .|..+.+.+.+ ...||-..-...+++.+.+.++. .. T Consensus 442 i~yis~La~aq~~~~~~~i~~~~~~~~~laq~~Pe~ld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~~~~~qqq~~ 521 (549) T protein:vir:10 442 VEYDSPLNKAMRAGEGAAILQWLQQLGIVSQFDPAAAKVPNGARIARLLADYGGVPVEAMSTDEELQAQQAAEAQAAQMQ 521 (549) T ss_pred EEeecHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHhcCCHHHHHHHHHHhcCCCccccCCHHHHHHHHHHHHHHHHHH Confidence 44433211 112222222211 111 24444444444 45665433233444433332211 11 Q ss_pred c-ccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 503 K-TAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 503 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) + ..++. .+++.. ++.+.+.-.+.+ T Consensus 522 ~~~~~a~---~a~~~a------~~~~~~~ta~~~ 546 (549) T protein:vir:10 522 QMLAAAP---VAAGAI------KDLSDAQTAAQT 546 (549) T ss_pred HHHHHHH---HHHHHH------HhhhhhcCCCcc Confidence 1 11111 000111 111111111122 No 131 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=96.63 E-value=0.00045 Score=38.91 Aligned_cols=449 Identities=15% Similarity=0.106 Sum_probs=152.5 Q ss_pred CCcch----------hhhhh--hhh--------cceecCCCC-CCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcCh Q lcl|Aclame:pro 1 MARKR----------TTIRR--DVQ--------SKVLIPPQA-PPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQ 59 (535) Q Consensus 1 ~~~~~----------~~~~~--~~~--------~~~~~~~~~-~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~ 59 (535) ||||- ...|. |+. ...--+|++ ||..|.+..- .+.|.+.+..-.=.-+.+.-+|. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~----~~d~~~~~~~r~g~~~~~~~~g~ 76 (648) T protein:vir:79 1 MARKVWGRGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSA----KRDPKMSLVKRIGLAIMDGGGGG 76 (648) T ss_pred CccchhcchhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccc----cccchhHHHHHhHHHHHhhcCCc Confidence 66652 11121 111 011122333 3333332221 23444333222212333333332 Q ss_pred HHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhcc-chhHHHHHHHHhhhhhccccccc------cCH-HHHHHHhccC Q lcl|Aclame:pro 60 EAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIF-YNVTARTLDGMMGQVFSRDPIRQ------LPP-ALEAIVEDID 131 (535) Q Consensus 60 ~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~-~n~~~~tv~~l~G~lF~k~p~~~------~p~-~l~~l~~d~d 131 (535) .. +. .++ + .|... .+++. .++..++|+.++..+.+-+..+. +.. ....++..- T Consensus 77 ~~-------~~-epp---~------d~~~l-~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~~~~~~~~~~ll~rP- 137 (648) T protein:vir:79 77 RD-------FE-EPE---F------DFNEI-TSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPNAVEYIRMRFTLMAE- 137 (648) T ss_pred cc-------cc-cCC---c------CHHHH-HHHHhcChHHHHHHHHHHHHHhhCcceEEecCCccchhhHHHHHhhcc- Confidence 22 21 111 1 14432 22222 45677777777777665543331 111 111222111 Q ss_pred CCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEE-echhhhhcceeeecCCccceeEEEEEE Q lcl|Aclame:pro 132 GEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITL-VHPTSIINWRTKLVGGKSVISLVVIQE 210 (535) Q Consensus 132 ~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~-~~~~~Ii~w~~~~~~g~~~Lt~v~l~E 210 (535) ....+.++|++.+....+.+|-+|+.+.....+.. |.... +....+. .+..++-++ T Consensus 138 n~~~t~~~f~~~l~~~lll~GNAYveiiRd~~G~~------------~~~l~~~~~~~~~----------~v~~l~pl~- 194 (648) T protein:vir:79 138 ATQIPTNQLFIEIAEDLVKYCNVVIAKSRAKDALP------------FQGMNVMGVGDSM----------PVAGYFPLN- 194 (648) T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEEecCCCcc------------chhhhhhhhcccc----------ceeeeEeec- Confidence 12467899999999999999999999987765531 21110 0000000 000000010 Q ss_pred EEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEec-cCCCcCCCCcch Q lcl|Aclame:pro 211 NVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIG-PLDNNADIDHPP 289 (535) Q Consensus 211 ~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~-~~~~~~~~~~pp 289 (535) . . +++++ .+.+|.....+|.....+. .+... .. -++.+. ....+...|.|| T Consensus 195 -----p-----~---~v~v~-~d~~g~~~~Y~y~~~g~~~-------~~~~~--~~-----dIIHik~~~~~d~~~GlSp 246 (648) T protein:vir:79 195 -----L-----A---SMKVK-RDKFGMIKGWQQEQEGQDK-------PQKFK--PE-----DIVHIYYKREKGRAFGTPW 246 (648) T ss_pred -----C-----c---eeEEE-EcCCCceeeeEEEecCCce-------eEEec--Cc-----cEEEEccCCCCCCceeccH Confidence 0 0 00000 0111111111111111000 00000 00 122221 222334568888 Q ss_pred HHHHHHHHHHHHhhHHHHHH-HHHHhcCceeEeeC-CCCccch-hccCcceeeecCcccccCCCCCccceeecCcchhH- Q lcl|Aclame:pro 290 LLDLCEVNIGHYRNSADYEE-MAFVAGQPTAFFTG-LTKDWVE-DVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP- 365 (535) Q Consensus 290 L~dLA~ln~~hy~~~sdl~~-~l~~~~~P~~~~~G-~~~~~~~-d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~- 365 (535) |..++. .+...+....+.. .....++|..+++- ......+ .......+.-+-+.+...+.......+.+...+.. T Consensus 247 i~~a~~-aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~~~~~e~~k~~~e~~~~~~~~~~i~gg~v~~~~~~i~~~~s~~ 325 (648) T protein:vir:79 247 LLPALD-DIRALRQVEENVLRLVYRNLHPLWHVKVGLEQEGFGAEEGEVDLVRGEVENMDVEGGMVTTERVNISSIASNQ 325 (648) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhccCCccEEEEeCCCccchHHHHHHHHHHHHhcccccccccccccceeeccccCCHH Confidence 866544 3333344443433 34556778777652 1111111 10000111112222222232233333333332111 Q ss_pred -HHHHH---HHHHHHHH---Hhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHcC Q lcl|Aclame:pro 366 -FEAMT---HKESQMIA---MGANLLVK-SGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALR-W------ANQFQT 430 (535) Q Consensus 366 -~~~l~---~~e~qm~~---lga~~l~~-~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr-~------~a~~~g 430 (535) .+.++ ...++|++ +...++.. .+.+.+..+... ..-...+..++..+...++..+- . +-.|+. T Consensus 326 dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~stae~~~--~~~~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~ 403 (648) T protein:vir:79 326 IIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTGDNLS--SDFKDRIKALQKVMATFINEFMVKEILMEGGFDPVLN 403 (648) T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc Confidence 12222 22233433 23333321 111111111111 11122233333333333332221 1 111221 Q ss_pred CCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcc---CCHHHHHH---HHHhch---h Q lcl|Aclame:pro 431 GIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASED---DAKAETEG---KATVEF---I 501 (535) Q Consensus 431 ~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~---~~~eee~~---~i~~e~---~ 501 (535) . ...++|..+ + .........++.+.+++++|.+|..++++.+ |+ ++. ........ ....+. . T Consensus 404 ~---d~~ieF~~~-~-Llr~D~~~~a~~~~~l~~~GilT~NEaR~~l---Gl-pPi~~g~~~~~l~~~~~~~~~~~~~~~ 474 (648) T protein:vir:79 404 P---DDKVEFRFN-E-IDMDSKIKLENQAVFLYEHNAISEDEMRELI---GR-DPVDDGEGRAKMHLQMVTIAQATALAA 474 (648) T ss_pred c---cceEEEeec-c-cchhhHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCCccccccccccchhcccccc Confidence 1 123344433 1 1111112345667789999999998887644 43 222 11111100 000000 0 Q ss_pred hcccCCCcCCCCCCCcccccccccccCCCCCCC-----C Q lcl|Aclame:pro 502 AKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAG-----N 535 (535) Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 535 (535) .++.+++....+++++......++.+.-.++.| + T Consensus 475 ~~~~~~~~~~~~a~~eg~~~e~~~~~~~~~~~g~~~~~~ 513 (648) T protein:vir:79 475 LAPTPAGGSSASASGDKKKKATDNKTKPTNQHGTKTSPK 513 (648) T ss_pred CCCCCCCCCCCCccccccccccCCCCCCCCCCCcCCCCc Confidence 011111111111111111111112221111111 1 No 132 >protein:vir:103330 Length: 517 # NCBI annotation: head portal-like protein # Family: family:all:481 # MgeID: mge:1609 # MgeName: Era103 # Cross-refs: genbank:acc:YP_001039666;genbank:gi:125999995;genbank:GeneID:4818406 Probab=96.59 E-value=0.00049 Score=38.73 Aligned_cols=439 Identities=10% Similarity=0.049 Sum_probs=165.1 Q ss_pred ccCC-CCCccCHHHHHHHHHHHHH---HHHhcChHHHHHHHhhhCCCCCC-CCCChhhHHHHHHHHhhhccchhHHHHHH Q lcl|Aclame:pro 30 PSLP-NVGYQRVEFGEMLPKWRKI---MDCLSGQEAIKAKREEYLPMPSV-DSRDEEQRRRYETYLQRAIFYNVTARTLD 104 (535) Q Consensus 30 ~~M~-~v~~~hp~y~~~~~~w~~i---~d~~~G~~~~~~~g~~YLP~~~~-~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~ 104 (535) -.|- -++. .....+|+.+ |.-+ +..+++-..-.||..-. ......+.. .|-+...+.++ T Consensus 1 ~~~~~~~e~-----~~l~~r~~~Lk~~R~~~--e~~w~e~~~~~lP~~~~~~~~~~~~~~---------~~dstg~~a~~ 64 (517) T protein:vir:10 1 MDMRFAGNK-----SKIPKLYEQLVGKRSPF--LSRAENYSRFTLPYLMADVNDDLSSQN---------AWQDDGASATN 64 (517) T ss_pred CcccccccH-----HHHHHHHHHHHHhhhHH--HHHHHHHHHHhccccccCCCCCccccc---------cccchHHHHHH Confidence 2222 1222 2333344433 2222 33455555555664311 111111111 23333344444 Q ss_pred ----HHhhhhhc-ccc--ccccCH--------------HHHHHHhccC------CCCCCHHHHHHHHHHHHHhhCcEEEE Q lcl|Aclame:pro 105 ----GMMGQVFS-RDP--IRQLPP--------------ALEAIVEDID------GEGVSLDQQAKKALGYTMGFGRAAIF 157 (535) Q Consensus 105 ----~l~G~lF~-k~p--~~~~p~--------------~l~~l~~d~d------~~G~~L~~~~~~~~~~~l~~G~~~vl 157 (535) +|.+.+|. ..| .+.+.+ .++.+++.|. ...++++.-+..++.+...+|.+.++ T Consensus 65 ~LAa~l~~~ltpp~~~WF~l~~~~~~l~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~ly 144 (517) T protein:vir:10 65 FLSNKLSQVLFPAQRSFFRIDLTPEGIKQLDNEAMTQSTAQKLLSDVEKAAMLYGESLQFRPAVVEAFKHLIVTGNVMMY 144 (517) T ss_pred HHHHHHHHhhcCCCCccccccCCHHHHHhhccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEE Confidence 44444443 111 112221 2343433331 13457888888999999999988777 Q ss_pred EeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCcccc------------- Q lcl|Aclame:pro 158 TDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFETT------------- 222 (535) Q Consensus 158 VD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~~~------------- 222 (535) ++ ... ..+..|+-.+. -.... +...+.-|+.|+.+.... ..|+.. T Consensus 145 ~~--~~~--------------~~~~~~pl~~y---~v~~d-~~G~v~~ivrr~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 204 (517) T protein:vir:10 145 HP--DKT--------------SPIQAVPLHHY---CVRRD-NNGTVLDIVFLQEKALETFEPSIRMAIQASRKGKQYKDK 204 (517) T ss_pred Ee--CCC--------------CcEEEEEcCeE---EEeeC-CCcCeEEEEeeeeccHHHHHHHhhhhcchhhhhhccCCc Confidence 64 111 12344554442 22222 233343466666543222 333321 Q ss_pred -eeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccc---eeEEEEeccCCCcCCCCcchHHHHHHHHH Q lcl|Aclame:pro 223 -YVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFK---EIPFQFIGPLDNNADIDHPPLLDLCEVNI 298 (535) Q Consensus 223 -~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~---~IP~v~~~~~~~~~~~~~ppL~dLA~ln~ 298 (535) .++-|-...+..+|.|.+ ..+.+ .......++-++. +||+.|.... +...|.+|-.+-..-.. T Consensus 205 ~~v~v~~~v~~~~~~~~~~---~~~~d--------~~~~~~~s~y~~~e~P~~~~Rw~~~~--ge~YGrgp~~~~L~D~k 271 (517) T protein:vir:10 205 DNVKLYTHAKRTKDGKYLI---RQSAD--------DVPVGKESTVTEDKSPFLILTWKRSY--GEDYGRGMAEDHAGAFF 271 (517) T ss_pred CceEEEEEEEEeCCCceEE---EEEeC--------ceeeccccccccccCCeeeeeeeecC--CCCcccchHHHhHHHHH Confidence 222233333333343321 11111 1111223343344 4444444333 34555666443322222 Q ss_pred HHHhhHHHHHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecCc-chh--HHHHHHHHH Q lcl|Aclame:pro 299 GHYRNSADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITP-NSV--PFEAMTHKE 373 (535) Q Consensus 299 ~hy~~~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~-~~l--~~~~l~~~e 373 (535) .+...+-.+-.....+..|.+.+. |.. .+..+.-|....+.-..-.+...+++.. ..+ ..+.+++++ T Consensus 272 ~L~~l~~~~~~~~~~a~~~~~lv~~~~~~--------~~~~l~~~~~g~~~~g~~~~v~~~~~~~~~d~~~~~~~i~~~~ 343 (517) T protein:vir:10 272 VIQFLSEALARGMALMADVKYLVKPGSYT--------DINQFVEGGSGAVLHGVEGDIHIVQLGKYADYTPIQAVLNDYR 343 (517) T ss_pred HHHHHHHHHHHHHHHhccCCcccCccccc--------chhhccCCCccccccCCcccceeeecccccchhHHHHHHHHHH Confidence 222232233333334444444332 221 1222333333222211122344555432 233 346677777 Q ss_pred HHHHHH--hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHcCCCCCCceeEEEEec-- Q lcl|Aclame:pro 374 SQMIAM--GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMA-----FRKALRWANQFQTGIVNDETVEYNLNT-- 444 (535) Q Consensus 374 ~qm~~l--ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a-----~~~~lr~~a~~~g~~~~~~~~~v~~n~-- 444 (535) +++... .-.+...+....||++...+..-....|.-+-.++..= +++++..+ +.......+.+++-. T Consensus 344 ~rI~~af~~~~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~~l----~~~l~~~~v~~~~~s~l 419 (517) T protein:vir:10 344 QRIGRVFMMEAMTRRDAERVTAYEIQRDAMLVEQSLGGVYSLFATTFQGPLARWFMNGI----SSILTSKNVSPTILTGI 419 (517) T ss_pred HHHHHHHhhhhhhccCCccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh----hhhcCCCCccceeeccH Confidence 777552 22233445556899998876654444444444443322 23333322 222222233333211 Q ss_pred ccCCccCCHHHHHHHHHHHhc---------CCCCHHHHHHHH-HhCCCCCccCCHHHHHHHHHhchhhcc---cCCCcCC Q lcl|Aclame:pro 445 DFPAARLTPNERAELILEWQQ---------GAITFKEMRAGL-RRAGVASEDDAKAETEGKATVEFIAKT---AAAGKVG 511 (535) Q Consensus 445 df~~~~~d~~~~~al~~l~~~---------G~is~et~~~~L-~r~gvl~~~~~~eee~~~i~~e~~~~~---~~~~~~~ 511 (535) .-.....+.+.+..++..+.. -.|-.+.+.+.+ ...|+-..-...+++.....++...+. ..+...+ T Consensus 420 a~l~r~~~~~~i~~~~~~i~~~a~~~~~~~~~id~d~~~~~~a~~~Gvp~~~irs~~ev~~~~~~~~~~~~~~~~~~~ag 499 (517) T protein:vir:10 420 EALGRMAELDKLGTFNGYVSMTAQWPEPLQQAIKWPDFTDWVQGQISANFPFFKTQDELNAEAQAQQEQEATKYAAEQAG 499 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChHHHhcCCHHHHHHHHHHHhCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 000011112222222221210 123333444433 445653322333333222222211110 0000000 Q ss_pred CCCCCcccccccccccCCC Q lcl|Aclame:pro 512 DAASGGTNKAKLNNGNGGG 530 (535) Q Consensus 512 ~~~~~~~~~~~~~~~~~~~ 530 (535) . +.++.-++++.+-.||+ T Consensus 500 ~-~~~~~~~~~~~~~~~~~ 517 (517) T protein:vir:10 500 K-AIPDMVKNGQINPQGGQ 517 (517) T ss_pred H-HHHHHHhCCCCCCCCCC Confidence 0 11112222233333333 No 133 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=96.53 E-value=0.00053 Score=38.52 Aligned_cols=397 Identities=12% Similarity=0.082 Sum_probs=159.3 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHh-h---------hC---CCCCCCCCChhhHHHHHHHHhhhccchh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKRE-E---------YL---PMPSVDSRDEEQRRRYETYLQRAIFYNV 98 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~-~---------YL---P~~~~~~~~~E~~~~Y~~rl~rA~~~n~ 98 (535) |||. .....|.++++.+.....+...+. . ++ |-..+... .....++.+..+-. T Consensus 1 ~~~~--------~~mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v------~~~~al~~~~V~~~ 66 (432) T protein:vir:81 1 MPDE--------KKLGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAV------NADAIMRLDAVAAC 66 (432) T ss_pred CCch--------hhcchhhhhhhhcccccccccccccccccCccchhhhcccccccCccc------chHhhhccHHHHHH Confidence 6653 234455555554433222211000 0 00 00000000 02334444444455 Q ss_pred HHHHHHHHhhhhhc---ccc--ccc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHH Q lcl|Aclame:pro 99 TARTLDGMMGQVFS---RDP--IRQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQ 172 (535) Q Consensus 99 ~~~tv~~l~G~lF~---k~p--~~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~ 172 (535) +..+-+.++.+.|. +.. ... ....+..++..-=....+-.+|.+.+....+.+|-+|+++.... |.+ T Consensus 67 i~~Ia~~ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~~-g~~------ 139 (432) T protein:vir:81 67 VKLVSQAIAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD-GRI------ 139 (432) T ss_pred HHHHHHhhhhCceeeEEecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcE------ Confidence 55566666666553 111 111 22334455432112346778999999999999999999986532 321 Q ss_pred HhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcc Q lcl|Aclame:pro 173 KLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMY 252 (535) Q Consensus 173 ~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~ 252 (535) .-+..++|..|. + ..+. ++ ...|++.. .+|... .+ T Consensus 140 ------~~L~~l~~~~v~-----------------v---~~~~-~g-----~~~y~~~~--~~g~~~--~~--------- 174 (432) T protein:vir:81 140 ------ESLQYLANDRLT-----------------I---TTDP-KG-----NTAYRYRR--TDGQMI--DI--------- 174 (432) T ss_pred ------EEEEEEcCCceE-----------------E---EECC-CC-----cEEEEEEe--cCceEE--EE--------- Confidence 134445554431 0 0011 11 01111111 011110 00 Q ss_pred ccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCCccchh Q lcl|Aclame:pro 253 YSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTKDWVED 331 (535) Q Consensus 253 ~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~~~~~d 331 (535) +.+ ..| .+.....+...|.+||.-++. .+........+...+ ...+.|-.++.- +....++ T Consensus 175 -------~~~------~ii---h~r~~~~dg~~G~spi~~~~~-~i~~~~~~~~~~~~~f~ng~~~~gil~~-~~~l~~e 236 (432) T protein:vir:81 175 -------PKQ------QIW---KIMGYSLDGENGLSAIRYGAQ-IFGTAIAAEAQAARAFRNGQLQSVYYQI-DRFLTDD 236 (432) T ss_pred -------ccc------cEE---EecCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcceEEec-CCCCCHH Confidence 000 011 111111223467888865543 344444444444333 334567556553 2111111 Q ss_pred ccC--cceee--ecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHH-- Q lcl|Aclame:pro 332 VFK--DFKVH--LGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEA-- 401 (535) Q Consensus 332 ~~~--~~~i~--iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~-- 401 (535) ..+ .+.+. ..+..++.++.+.++..+..++..... +..+-...++++ +...++.......++..+.++.+ T Consensus 237 ~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~ 316 (432) T protein:vir:81 237 QYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQL 316 (432) T ss_pred HHHHHHHHHhhhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHH Confidence 100 01111 122346677877776666655544321 222222233322 23344433222223333333222 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC Q lcl|Aclame:pro 402 -SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRA 480 (535) Q Consensus 402 -~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~ 480 (535) --...|.-++..+++++++.| +... ......|+++.+=.......+.+.++.+++++|.++.-+.++.+ T Consensus 317 ~f~~~tl~P~~~~ie~~l~~kL------l~~~-~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~--- 386 (432) T protein:vir:81 317 GFLTMTLSPWLRRIEQSIALNL------LSPA-ERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIE--- 386 (432) T ss_pred HHHHHHHHHHHHHHHHHHHhhc------cCcc-ccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHh--- Confidence 224456667777777776532 1111 11123455544322222234456777789999999988877654 Q ss_pred CCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 481 GVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 481 gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) |+ ++-...+ . .+... .+..+-+..+ ...+..++.|.++...| T Consensus 387 gl-pp~~g~~-~--~~~~~------~~~~pl~~~~---~~~~~~~~~~~~n~~~~ 428 (432) T protein:vir:81 387 GL-PKLGGNA-A--VLTVQ------SAMVPLDSIG---LQASPEPASGLGNQQQD 428 (432) T ss_pred CC-CCCCCCc-c--eEeec------Ccccchhhhc---cCCCCCCCCCCCCcccc Confidence 32 2211000 0 01000 0000000000 00011112222222222 No 134 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=96.48 E-value=0.00058 Score=38.32 Aligned_cols=403 Identities=12% Similarity=0.054 Sum_probs=161.3 Q ss_pred HHHHHHHHHHhcChHHHHHHHhhhCCCC-------CCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---ccc Q lcl|Aclame:pro 46 LPKWRKIMDCLSGQEAIKAKREEYLPMP-------SVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDP 115 (535) Q Consensus 46 ~~~w~~i~d~~~G~~~~~~~g~~YLP~~-------~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p 115 (535) ..-|.+++..+....+=. .-..++... -+...+...- .-+..++.+..+..+..+-+.++++.|. +.. T Consensus 1 M~~~~r~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~g~~~~~~~v-~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 78 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQT-SQVIELNKDDEKLLEWLGISPSTISV-KGKNALKVATVFACIKILSESVSKLPLKIYQEDE 78 (432) T ss_pred CChHHHHHHhcCccccCc-ccccccCCchHHHHHHhCCCcCcccc-chhhhhccHHHHHHHHHHHHhhccCceEEEEecC Confidence 456666666654321100 001111100 0000000000 0012233333334444555555555443 211 Q ss_pred c--cc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcc Q lcl|Aclame:pro 116 I--RQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINW 192 (535) Q Consensus 116 ~--~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w 192 (535) . .. ....+..++..-=....+-.+|.+.+....+.+|-+|+++.....|.+. -+..++|..|- T Consensus 79 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~------------~L~~i~~~~v~-- 144 (432) T protein:vir:10 79 YGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ------------ALWPIDASKVT-- 144 (432) T ss_pred CceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EEEEEcCceeE-- Confidence 1 11 2334555553222256788999999999999999999999876555321 45556665541 Q ss_pred eeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeE Q lcl|Aclame:pro 193 RTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIP 272 (535) Q Consensus 193 ~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP 272 (535) |+ .+++++.......+.... ..|.. .. .+.+ . T Consensus 145 -------------v~------~d~~~~~~~~~~~~y~~~--~~g~~--------------~~----~~~~-------e-- 176 (432) T protein:vir:10 145 -------------VY------IDDVGLLNSKTKMWYVVN--TGGQQ--------------RV----LKPE-------E-- 176 (432) T ss_pred -------------EE------EcCcccccccceEEEEEe--cCCeE--------------EE----Eccc-------c-- Confidence 11 111111111111111100 01110 00 0000 0 Q ss_pred EEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhccC--cc---eeeec---C Q lcl|Aclame:pro 273 FQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDVFK--DF---KVHLG---S 342 (535) Q Consensus 273 ~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~~~--~~---~i~iG---~ 342 (535) ++.+ +....+...|.+|+.-++.. +........+... ....+.|..+++.-.. ..++..+ .. ...-| . T Consensus 177 iih~r~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~p~gil~~~~~-l~~e~~~~~~~~~~~~~~g~~n~ 254 (432) T protein:vir:10 177 ILHFKNGITLDGLVGVPTMEYLKST-LENSASADKFINNFYKQGLQVKGLVQYVGD-LNEDAKKVFRENFESMSSGLQNS 254 (432) T ss_pred EEEecCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCccEEEEcCCC-CCHHHHHHHHHHHHHHhcccccC Confidence 1222 12223445678888766543 3333333333333 3455678877763221 1111100 00 11122 3 Q ss_pred cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 343 RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKS-GGNRTFGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 343 ~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~-~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) ..++.++.+.++..+..++..... +..+...++++. +...++... .++.+. .......-....|.-++..++++ T Consensus 255 ~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~-~e~~~~~~~~~~l~P~~~~ie~~ 333 (432) T protein:vir:10 255 HRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNN-IEQQQQQFYTDTLQATLTMYEQE 333 (432) T ss_pred CcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHH Confidence 356677877776666655544321 222222333332 333344221 111111 11111122344566677777776 Q ss_pred HHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKAT 497 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~ 497 (535) +++.|=.-..+. ....|+++.+-.........+.++.+++..|.++...+++.+ |+ ++...-++ .- T Consensus 334 ln~kLl~~~~~~------~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~---g~-~pi~ggD~----~~ 399 (432) T protein:vir:10 334 MTYKLFLDSELD------KGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKE---DL-PPEAGGDR----LL 399 (432) T ss_pred HHHhhcChhhcC------CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCe----Ee Confidence 665432111111 123344444333222234456777789999999988887654 43 22110000 00 Q ss_pred hchhhcccCCCcCCCCCCCc-ccccccccccCCCCCCCC Q lcl|Aclame:pro 498 VEFIAKTAAAGKVGDAASGG-TNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 498 ~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 535 (535) ...+..+-+..+.. ..+.+.|...+.+...|| T Consensus 400 ------~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 400 ------VNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred ------ecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 00011111100000 000001111122223334 No 135 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=96.48 E-value=0.00058 Score=38.32 Aligned_cols=403 Identities=12% Similarity=0.054 Sum_probs=161.3 Q ss_pred HHHHHHHHHHhcChHHHHHHHhhhCCCC-------CCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---ccc Q lcl|Aclame:pro 46 LPKWRKIMDCLSGQEAIKAKREEYLPMP-------SVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDP 115 (535) Q Consensus 46 ~~~w~~i~d~~~G~~~~~~~g~~YLP~~-------~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p 115 (535) ..-|.+++..+....+=. .-..++... -+...+...- .-+..++.+..+..+..+-+.++++.|. +.. T Consensus 1 M~~~~r~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~g~~~~~~~v-~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 78 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQT-SQVIELNKDDEKLLEWLGISPSTISV-KGKNALKVATVFACIKILSESVSKLPLKIYQEDE 78 (432) T ss_pred CChHHHHHHhcCccccCc-ccccccCCchHHHHHHhCCCcCcccc-chhhhhccHHHHHHHHHHHHhhccCceEEEEecC Confidence 456666666654321100 001111100 0000000000 0012233333334444555555555443 211 Q ss_pred c--cc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcc Q lcl|Aclame:pro 116 I--RQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINW 192 (535) Q Consensus 116 ~--~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w 192 (535) . .. ....+..++..-=....+-.+|.+.+....+.+|-+|+++.....|.+. -+..++|..|- T Consensus 79 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~------------~L~~i~~~~v~-- 144 (432) T protein:vir:10 79 YGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ------------ALWPIDASKVT-- 144 (432) T ss_pred CceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EEEEEcCceeE-- Confidence 1 11 2334555553222256788999999999999999999999876555321 45556665541 Q ss_pred eeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeE Q lcl|Aclame:pro 193 RTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIP 272 (535) Q Consensus 193 ~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP 272 (535) |+ .+++++.......+.... ..|.. .. .+.+ . T Consensus 145 -------------v~------~d~~~~~~~~~~~~y~~~--~~g~~--------------~~----~~~~-------e-- 176 (432) T protein:vir:10 145 -------------VY------IDDVGLLNSKTKMWYVVN--TGGQQ--------------RV----LKPE-------E-- 176 (432) T ss_pred -------------EE------EcCcccccccceEEEEEe--cCCeE--------------EE----Eccc-------c-- Confidence 11 111111111111111100 01110 00 0000 0 Q ss_pred EEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhccC--cc---eeeec---C Q lcl|Aclame:pro 273 FQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDVFK--DF---KVHLG---S 342 (535) Q Consensus 273 ~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~~~--~~---~i~iG---~ 342 (535) ++.+ +....+...|.+|+.-++.. +........+... ....+.|..+++.-.. ..++..+ .. ...-| . T Consensus 177 iih~r~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~p~gil~~~~~-l~~e~~~~~~~~~~~~~~g~~n~ 254 (432) T protein:vir:10 177 ILHFKNGITLDGLVGVPTMEYLKST-LENSASADKFINNFYKQGLQVKGLVQYVGD-LNEDAKKVFRENFESMSSGLQNS 254 (432) T ss_pred EEEecCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCccEEEEcCCC-CCHHHHHHHHHHHHHHhcccccC Confidence 1222 12223445678888766543 3333333333333 3455678877763221 1111100 00 11122 3 Q ss_pred cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 343 RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKS-GGNRTFGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 343 ~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~-~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) ..++.++.+.++..+..++..... +..+...++++. +...++... .++.+. .......-....|.-++..++++ T Consensus 255 ~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~-~e~~~~~~~~~~l~P~~~~ie~~ 333 (432) T protein:vir:10 255 HRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNN-IEQQQQQFYTDTLQATLTMYEQE 333 (432) T ss_pred CcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHH Confidence 356677877776666655544321 222222333332 333344221 111111 11111122344566677777776 Q ss_pred HHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKAT 497 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~ 497 (535) +++.|=.-..+. ....|+++.+-.........+.++.+++..|.++...+++.+ |+ ++...-++ .- T Consensus 334 ln~kLl~~~~~~------~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~---g~-~pi~ggD~----~~ 399 (432) T protein:vir:10 334 MTYKLFLDSELD------KGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKE---DL-PPEAGGDR----LL 399 (432) T ss_pred HHHhhcChhhcC------CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCe----Ee Confidence 665432111111 123344444333222234456777789999999988887654 43 22110000 00 Q ss_pred hchhhcccCCCcCCCCCCCc-ccccccccccCCCCCCCC Q lcl|Aclame:pro 498 VEFIAKTAAAGKVGDAASGG-TNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 498 ~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 535 (535) ...+..+-+..+.. ..+.+.|...+.+...|| T Consensus 400 ------~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 400 ------VNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred ------ecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 00011111100000 000001111122223334 No 136 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=96.48 E-value=0.00058 Score=38.32 Aligned_cols=403 Identities=12% Similarity=0.054 Sum_probs=161.3 Q ss_pred HHHHHHHHHHhcChHHHHHHHhhhCCCC-------CCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---ccc Q lcl|Aclame:pro 46 LPKWRKIMDCLSGQEAIKAKREEYLPMP-------SVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDP 115 (535) Q Consensus 46 ~~~w~~i~d~~~G~~~~~~~g~~YLP~~-------~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p 115 (535) ..-|.+++..+....+=. .-..++... -+...+...- .-+..++.+..+..+..+-+.++++.|. +.. T Consensus 1 M~~~~r~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~g~~~~~~~v-~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 78 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQT-SQVIELNKDDEKLLEWLGISPSTISV-KGKNALKVATVFACIKILSESVSKLPLKIYQEDE 78 (432) T ss_pred CChHHHHHHhcCccccCc-ccccccCCchHHHHHHhCCCcCcccc-chhhhhccHHHHHHHHHHHHhhccCceEEEEecC Confidence 456666666654321100 001111100 0000000000 0012233333334444555555555443 211 Q ss_pred c--cc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcc Q lcl|Aclame:pro 116 I--RQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINW 192 (535) Q Consensus 116 ~--~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w 192 (535) . .. ....+..++..-=....+-.+|.+.+....+.+|-+|+++.....|.+. -+..++|..|- T Consensus 79 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~------------~L~~i~~~~v~-- 144 (432) T protein:vir:10 79 YGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ------------ALWPIDASKVT-- 144 (432) T ss_pred CceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EEEEEcCceeE-- Confidence 1 11 2334555553222256788999999999999999999999876555321 45556665541 Q ss_pred eeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeE Q lcl|Aclame:pro 193 RTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIP 272 (535) Q Consensus 193 ~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP 272 (535) |+ .+++++.......+.... ..|.. .. .+.+ . T Consensus 145 -------------v~------~d~~~~~~~~~~~~y~~~--~~g~~--------------~~----~~~~-------e-- 176 (432) T protein:vir:10 145 -------------VY------IDDVGLLNSKTKMWYVVN--TGGQQ--------------RV----LKPE-------E-- 176 (432) T ss_pred -------------EE------EcCcccccccceEEEEEe--cCCeE--------------EE----Eccc-------c-- Confidence 11 111111111111111100 01110 00 0000 0 Q ss_pred EEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhccC--cc---eeeec---C Q lcl|Aclame:pro 273 FQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDVFK--DF---KVHLG---S 342 (535) Q Consensus 273 ~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~~~--~~---~i~iG---~ 342 (535) ++.+ +....+...|.+|+.-++.. +........+... ....+.|..+++.-.. ..++..+ .. ...-| . T Consensus 177 iih~r~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~p~gil~~~~~-l~~e~~~~~~~~~~~~~~g~~n~ 254 (432) T protein:vir:10 177 ILHFKNGITLDGLVGVPTMEYLKST-LENSASADKFINNFYKQGLQVKGLVQYVGD-LNEDAKKVFRENFESMSSGLQNS 254 (432) T ss_pred EEEecCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCccEEEEcCCC-CCHHHHHHHHHHHHHHhcccccC Confidence 1222 12223445678888766543 3333333333333 3455678877763221 1111100 00 11122 3 Q ss_pred cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 343 RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKS-GGNRTFGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 343 ~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~-~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) ..++.++.+.++..+..++..... +..+...++++. +...++... .++.+. .......-....|.-++..++++ T Consensus 255 ~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~-~e~~~~~~~~~~l~P~~~~ie~~ 333 (432) T protein:vir:10 255 HRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNN-IEQQQQQFYTDTLQATLTMYEQE 333 (432) T ss_pred CcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc-HHHHHHHHHHHHHHHHHHHHHHH Confidence 356677877776666655544321 222222333332 333344221 111111 11111122344566677777776 Q ss_pred HHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKAT 497 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~ 497 (535) +++.|=.-..+. ....|+++.+-.........+.++.+++..|.++...+++.+ |+ ++...-++ .- T Consensus 334 ln~kLl~~~~~~------~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~---g~-~pi~ggD~----~~ 399 (432) T protein:vir:10 334 MTYKLFLDSELD------KGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKE---DL-PPEAGGDR----LL 399 (432) T ss_pred HHHhhcChhhcC------CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCe----Ee Confidence 665432111111 123344444333222234456777789999999988887654 43 22110000 00 Q ss_pred hchhhcccCCCcCCCCCCCc-ccccccccccCCCCCCCC Q lcl|Aclame:pro 498 VEFIAKTAAAGKVGDAASGG-TNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 498 ~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 535 (535) ...+..+-+..+.. ..+.+.|...+.+...|| T Consensus 400 ------~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 400 ------VNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred ------ecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 00011111100000 000001111122223334 No 137 >protein:vir:77597 Length: 725 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063735;genbank:gi:51236726;genbank:GeneID:2944241 Probab=96.46 E-value=0.0006 Score=38.24 Aligned_cols=476 Identities=10% Similarity=0.006 Sum_probs=173.9 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMG 108 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G 108 (535) |||-...|-+...+ ++.++.....+|+.. ..|. .+..-+++-.+ +..-..|-+ +|.++++|+.++| T Consensus 1 m~d~~~~~~~~~~~------~~~~~~~~~~~r~~a~~d~~fy---~G~Qw~~~~~~-~l~~q~rp~-~N~i~~~i~~v~g 69 (725) T protein:vir:77 1 MADNENRLESILSR------FDADWTASDEARREAKNDLFFS---RVSQWDDWLSQ-YTTLQYRGQ-FDVVRPVVRKLVS 69 (725) T ss_pred CCchHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHhh---CCCCCCHHHHH-HHHhcCCCc-cccHHHHHHHHHh Confidence 99866555543322 223333334433322 2233 22222333333 333344555 4999999999999 Q ss_pred hhhcccccccc-C---------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccchHHHHhcc Q lcl|Aclame:pro 109 QVFSRDPIRQL-P---------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTVLEQKLGL 176 (535) Q Consensus 109 ~lF~k~p~~~~-p---------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ad~~~~~ 176 (535) .-=++.+.+.+ | +.+..+++.+- +-++.+.-...+|..++.+|.+|+=| ||...+..-. ... T Consensus 70 ~~~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~-~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~~-----~~~ 143 (725) T protein:vir:77 70 EMRQNPIDVLYRPKDGARPDAADVLMGMYRTDM-RHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSN-----NQV 143 (725) T ss_pred hHHhCCcceEEecCCccHHHHHHHHHHHHHHHH-HhhCchhHHHHHHHHHhhcCcceeeeeecccCCCCCCC-----cee Confidence 88666655532 2 12333333221 12456666889999999999999654 5532211000 000 Q ss_pred CCcEEEEechhh-hhcceeeecCC---ccc--eeEEE-----------------EEEEEeecCCCcccceeeEEEEEeec Q lcl|Aclame:pro 177 YRPTITLVHPTS-IINWRTKLVGG---KSV--ISLVV-----------------IQENVLAQDDGFETTYVQQWRVLQLN 233 (535) Q Consensus 177 ~rPy~~~~~~~~-Ii~w~~~~~~g---~~~--Lt~v~-----------------l~E~~~~~~d~f~~~~~~~~rvl~l~ 233 (535) .+.+.+..++.+ +++|.....+. +.. .-|+- +.+.....+..+.+-....+||.+. T Consensus 144 i~~~~~~~~~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv~E~- 222 (725) T protein:vir:77 144 IRREPIHSACSHVIWDSNSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEF- 222 (725) T ss_pred eEEeecccChhhceeCchhhccChhhHHHHHHHhcCCHHHHHHHHhhCCcchhhcccccccccccccccCCCeeEEEEE- Confidence 011111111221 12222111110 000 00000 0000000000011111122333221 Q ss_pred CCceEEEE--E--Eeee---------ccC----------Cc---------------cc-cccceeeeccCCCccceeEEE Q lcl|Aclame:pro 234 AEGNYQVE--R--WRRE---------TQE----------EM---------------YY-SYSKHVPTDGNGNPFKEIPFQ 274 (535) Q Consensus 234 ~~g~y~v~--~--w~~~---------~~~----------~~---------------~~-~~~~~~~~~~~~~~l~~IP~v 274 (535) |....+. + +... ... .. +. ..+.....+....+-+.|||| T Consensus 223 -~~r~~~~~~~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~rv~~~~~~g~~~l~~~~~~~~~~~P~v 301 (725) T protein:vir:77 223 -YEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIV 301 (725) T ss_pred -EEEEEEeeEEEEecCCCCcceeecChhhHHHHHHHhhhcCchhhhhcccceeeeeEeeecCceeeccCCcCCCCccceE Confidence 1110000 0 0000 000 00 00 001111112122344667888 Q ss_pred EeccCC---CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCcee-EeeCCCCccchhccCcceeeecCcccccCCC Q lcl|Aclame:pro 275 FIGPLD---NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTA-FFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQ 350 (535) Q Consensus 275 ~~~~~~---~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~-~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~ 350 (535) +|...+ .+-.....-+.++.+.+.-++...|-+.+++..+..-.. +..|-.+.........+.+.......+.... T Consensus 302 P~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (725) T protein:vir:77 302 PVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENS 381 (725) T ss_pred EEeeeeeccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHhccccccccchhhhhHHHHHHHhccCCceecccccccCC Confidence 653222 111222244678888899998888888887765443222 2222111111111111222222222232222 Q ss_pred CC----ccceeecCcchhH---HHHHHHHHHHHHHH-h--hhhhcccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 351 GA----TAGILQITPNSVP---FEAMTHKESQMIAM-G--ANLLVKSGGNRTFGEA-QQEEASEQSILSACTKNVSMAFR 419 (535) Q Consensus 351 ~~----~~~~~e~~~~~l~---~~~l~~~e~qm~~l-g--a~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~~~a~~ 419 (535) |+ .+...+ ...+. .+.|+.....|..+ | ..++...+ +.+++.+ .....+....|..+..|+..+.. T Consensus 382 g~~~~~~i~~~~--~~~lp~~~~~ll~~~~~~i~~~tGi~~~~lG~~~-n~~SG~ai~~rq~qg~~~~~~~~Dnl~~~~~ 458 (725) T protein:vir:77 382 GDLPTQPLAYYE--NPEVPQANAYMLEAATSAVKEVATLGVDTEAVNG-GQVAFDTVNQLNMRADLETYVFQDNLATAMR 458 (725) T ss_pred CcccccCccccC--CCCchHHHHHHHHHHHHHHHHHhCCCHHHhCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22 222222 33333 34455555555443 3 23343333 3444433 33333344445666666666655 Q ss_pred H----HHHHHHHHcCCC-------CCCceeEEEEecc------------------cC--------CccCCHHHHHHHHHH Q lcl|Aclame:pro 420 K----ALRWANQFQTGI-------VNDETVEYNLNTD------------------FP--------AARLTPNERAELILE 462 (535) Q Consensus 420 ~----~lr~~a~~~g~~-------~~~~~~~v~~n~d------------------f~--------~~~~d~~~~~al~~l 462 (535) . +|.++..++... .++..-.+.+|.. |. ......+.+.+|+.+ T Consensus 459 ~~g~~lL~lI~~~~~~~rv~RI~~ed~~~~~v~in~~~~~~~~G~~~~~NDi~g~~Dv~v~~~p~~~s~r~~~~~~l~ql 538 (725) T protein:vir:77 459 RDGEIYQSIVNDIYDVPRNVTITLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVGPSFQSMKQQNRAEILEL 538 (725) T ss_pred HHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecccccccccchhHhhhhhccceeeEEeeccchHHHHHHHHHHHHHH Confidence 4 577788887321 0111111233310 21 111123445556666 Q ss_pred HhcCCCCHHHHHHHH-HhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC-------- Q lcl|Aclame:pro 463 WQQGAITFKEMRAGL-RRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA-------- 533 (535) Q Consensus 463 ~~~G~is~et~~~~L-~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 533 (535) .+..--..+.....| +-...+ ..--.++..+++..+........ +.++ ....+.....-....++ T Consensus 539 l~~~~~~~~~~~~~l~~~~~l~-d~~~~~e~~erirkq~~~~~~~q--~~~~---~e~q~~~~~qq~~~~q~~~e~~q~q 612 (725) T protein:vir:77 539 LGKTPQGTPEYQLLLLQYFTLL-DGKGVEMMRDYANKQLIQMGVKK--PETP---EEQQWLVEAQQAKQGQQDPAMVQAQ 612 (725) T ss_pred HHhccccchhHHHHHHHhhccc-cchHHHHHHHHHHhhhhhhhccC--CCCh---hhHHHHHHHHHHHHHhHHHHHHHHH Confidence 554211101110101 111111 11112445555544322211100 0100 00000000000000000 Q ss_pred -------------CC Q lcl|Aclame:pro 534 -------------GN 535 (535) Q Consensus 534 -------------~~ 535 (535) .+ T Consensus 613 ~~~~~~qa~~~kaq~ 627 (725) T protein:vir:77 613 GVLLQGQAELAKAQN 627 (725) T ss_pred HHHHHHHHHHHHHHH Confidence 00 No 138 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=96.42 E-value=0.00064 Score=38.10 Aligned_cols=400 Identities=13% Similarity=0.107 Sum_probs=171.3 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHH-HhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAK-REEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQV 110 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~-g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~l 110 (535) |-.+.+ .-+..-...-|..+...+.|.+..... +...=|-.......... -.-+..++.+..+-.+..+-+.++++. T Consensus 1 ~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~al~~~~v~~cv~~Ia~~iA~lp 78 (424) T protein:vir:18 1 MEEPKY-TIDLRTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDSS-INDERILQISTVWRCVSLISTLTACLP 78 (424) T ss_pred CCCCcc-eEeecCCCchHHHHHhhhccccccccccccccccccccccccccc-ccHHHhhccHHHHHHHHHHHHhhccCc Confidence 443222 122234456788888777664332111 11000100000000000 001333444444445555555555555 Q ss_pred hc---ccc-----ccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEE Q lcl|Aclame:pro 111 FS---RDP-----IRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTIT 182 (535) Q Consensus 111 F~---k~p-----~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~ 182 (535) |. +.. .+.....+..++..-=....+-.+|.+.+....+.+|.+|++++....|.++ -+. T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~------------~L~ 146 (424) T protein:vir:18 79 LDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVI------------SLL 146 (424) T ss_pred eEEEEeecCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EEE Confidence 43 111 1123444666665433456888999999999999999999999876655421 345 Q ss_pred EechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeec Q lcl|Aclame:pro 183 LVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTD 262 (535) Q Consensus 183 ~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~ 262 (535) .++|..|. .. ..++ +...+|. .+|..+ ..+.+ T Consensus 147 pl~~~~V~---v~------------------~~~~----~~~y~~~-----~~g~~~------------------~~~~~ 178 (424) T protein:vir:18 147 PLQSANMD---VK------------------LVGK----KVVYRYQ-----RDSEYA------------------DFSQK 178 (424) T ss_pred EecCcceE---EE------------------EcCC----eEEEEEE-----eCCeEE------------------Eeccc Confidence 55555441 00 0111 1111110 011100 00000 Q ss_pred cCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhc---cCc--c Q lcl|Aclame:pro 263 GNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDV---FKD--F 336 (535) Q Consensus 263 ~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~---~~~--~ 336 (535) . ++.+.....+...|.+|+.-++. .+.......++... ....+.|-.+++.......++. .+. . T Consensus 179 -------e--Iih~r~~~~dg~~G~spi~~~~~-~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~ 248 (424) T protein:vir:18 179 -------E--IFHLKGFGFTGLVGLSPIAFACK-SAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENFK 248 (424) T ss_pred -------c--EEEecCcCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHHHHHHH Confidence 0 11121112234568888866543 34444444455444 3455678777763222111111 000 1 Q ss_pred eeeec--CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHH---HHHHHHHH Q lcl|Aclame:pro 337 KVHLG--SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQE---EASEQSIL 407 (535) Q Consensus 337 ~i~iG--~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~---~~~~~S~L 407 (535) ...-| +...+.++.+.++..+..++..... +..+-...+++. +...++.... ..|...+..+ ..--...| T Consensus 249 ~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~-~~t~~~sn~eq~~~~f~~~tl 327 (424) T protein:vir:18 249 EIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVE-KSTSWGSGIEQQNLGFLQYTL 327 (424) T ss_pred HHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CcccccccHHHHHHHHHHHHH Confidence 12222 2235667877777666665544321 222222233322 2333442211 1221111111 12224456 Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccC Q lcl|Aclame:pro 408 SACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDD 487 (535) Q Consensus 408 ~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~ 487 (535) .-++..+++++++.|- .. .......|+++.+=.......+.+.++.+++++|.++.-++++.+ | +++.. T Consensus 328 ~P~~~~ie~~l~~~L~--~~-----~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~---g-l~pi~ 396 (424) T protein:vir:18 328 QPYISRWENSIQRWLI--PA-----KDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTD---N-LPPLP 396 (424) T ss_pred HHHHHHHHHHHHhhcC--Cc-----cccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---C-CCCCC Confidence 7777777777765441 01 011123455544322222223456677789999999987776543 3 22211 Q ss_pred CHHHHHHHHHhchhhcccCCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 488 AKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 488 ~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (535) .- +++ ....+..+-+. -+.+..+.+||+ T Consensus 397 gG----D~~------~~~~n~~~l~~--~~~~~~p~~~ga 424 (424) T protein:vir:18 397 GG----DVA------MRQSQYVPITD--LGTNKEPRNNGA 424 (424) T ss_pred Cc----Cee------eeccCccchHh--hhccCCCccCCC Confidence 00 000 00111111111 112233444444 No 139 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=96.35 E-value=0.00072 Score=37.83 Aligned_cols=421 Identities=15% Similarity=0.123 Sum_probs=186.3 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCC-C-CccCHHHHHHHHHHH-HHHHHhcChHHHHHHHhhhCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPN-V-GYQRVEFGEMLPKWR-KIMDCLSGQEAIKAKREEYLPMPSVDS 77 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~-v-~~~hp~y~~~~~~w~-~i~d~~~G~~~~~~~g~~YLP~~~~~~ 77 (535) |++--..--|-++...|.-||.+-.+|+.--++. + +.-.|. +|. .++..-.|. +.+ T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~------~l~~il~~a~~gd--~~~------------- 59 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPA------KLARILVEAEQGN--LQA------------- 59 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHH------HHHHHHHHhhCCC--HHH------------- Confidence 6665444444445555544555444443332221 1 111222 221 222222221 111 Q ss_pred CChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC-------HH----HHHHHhccCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 78 RDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP-------PA----LEAIVEDIDGEGVSLDQQAKKALG 146 (535) Q Consensus 78 ~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p-------~~----l~~l~~d~d~~G~~L~~~~~~~~~ 146 (535) .-+-|+.-+.| -.++...++.....|...++.++.+ .. ++.++.+. .+++.++..++. T Consensus 60 ----~~~L~edm~e~---D~~i~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~----~~~~~~i~~~ld 128 (526) T protein:vir:79 60 ----QAELFMDMEER---DAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDL----EGLEDLLLDALD 128 (526) T ss_pred ----HHHHHHHHHhh---ChHHHHHHHHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcc----cCHHHHHHHHHh Confidence 11235554433 3455555666666666666666422 11 23333322 257888877776 Q ss_pred HHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeE Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQ 226 (535) Q Consensus 147 ~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~ 226 (535) ++.+|.+.+=+- |+.+ +|.-.+..+..| +...|.. T Consensus 129 -A~~~G~s~~Ei~--------------------------------w~~~--~g~~~~~~l~~r-----~~~~F~~----- 163 (526) T protein:vir:79 129 -GIGHGYSCIELE--------------------------------WALQ--GREWMPLAFHHR-----PQSWFQL----- 163 (526) T ss_pred -hhhhcceeEEEE--------------------------------Eeec--CCceeEEEeeee-----cccceEe----- Confidence 667776555332 3221 221111111111 1111100 Q ss_pred EEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 227 WRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSAD 306 (535) Q Consensus 227 ~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sd 306 (535) +.++..+++ .+.. .. ..++. .+.++|=+ .+....+...+.+.|..++..-+--.....+ T Consensus 164 ------~~~~~~~l~-~~~~-~~-------~g~~l----~~~k~iv~--~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~ 222 (526) T protein:vir:79 164 ------NPEDQNELR-LRDN-SP-------AGEAL----QPFGWIIH--RPRARSGYVARSGLFRVLAWPYLFRHYATSD 222 (526) T ss_pred ------ccCCCcEEE-ecCC-CC-------Cceee----cCCceEEE--eecCCcCCccccchHHHHHHHHHHHHhhHHH Confidence 001100110 0100 00 00010 12222222 2333344455566566665444433336667 Q ss_pred HHHHHHHhcCceeEeeCCCCccchh--ccCcceeeecCcccccCCCCCccceeecCcchhH-H-HHHHHHHHHHHH--Hh Q lcl|Aclame:pro 307 YEEMAFVAGQPTAFFTGLTKDWVED--VFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-F-EAMTHKESQMIA--MG 380 (535) Q Consensus 307 l~~~l~~~~~P~~~~~G~~~~~~~d--~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~-~~l~~~e~qm~~--lg 380 (535) ...-++.-|.|+++.+--.....++ .+...--.+|++++..+|.+....|++..+.+.. + ..++...++|.. || T Consensus 223 w~~F~E~yG~P~~igky~~~a~~~ek~~L~~av~~i~~da~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iLG 302 (526) T protein:vir:79 223 LAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAVLG 302 (526) T ss_pred HHHHHHHcCCceEEEecCCCCCHHHHHHHHHHHHHHhcCcEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHHhh Confidence 7777888899999988433222222 2222224578899999999999999998654433 3 344555566543 44 Q ss_pred hhhhcccccccch--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCC-c-eeEEEEecccCCccCCHHH Q lcl|Aclame:pro 381 ANLLVKSGGNRTF--GEAQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVND-E-TVEYNLNTDFPAARLTPNE 455 (535) Q Consensus 381 a~~l~~~~~~~ta--~~a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~-~-~~~v~~n~df~~~~~d~~~ 455 (535) .-+........++ ..+........-.+.+-+..++++++ +++++++.|-.....+ . ...+++ ++....-.... T Consensus 303 qtlTs~~~~g~~gS~a~g~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~--~~~e~eDl~~~ 380 (526) T protein:vir:79 303 GTLTSTTSQSGGGAFALGQVHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVF--DLREQADITSM 380 (526) T ss_pred hhhccccccCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEe--CCCCcccHHHH Confidence 4443322222222 23344455566778899999999997 5999999987543221 1 123332 22222111345 Q ss_pred HHHHHHHHhcCC-CCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCC Q lcl|Aclame:pro 456 RAELILEWQQGA-ITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAG 534 (535) Q Consensus 456 ~~al~~l~~~G~-is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (535) ++.+.++...|. |+.+.+. ++.|+- .-...++... +...+.....+. +...+.........+..- T Consensus 381 a~~~~~L~~~G~~i~~~~i~---e~~gip-~~~~~e~~l~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 446 (526) T protein:vir:79 381 AQSIPALVNVGLEIPSAWVY---DKLGIP-QPAKNEPVLR---------PAAQPAILSRQH-GQRVAALATIVGPRYGDQ 446 (526) T ss_pred HHHHHHHHhCCCcCCHHHHH---HHhCCC-CCCCchhhcc---------ccCCcccccccc-ccccccccccccccCchh Confidence 667778888887 7776444 345652 2222222221 101111000000 000000000000000000 Q ss_pred C Q lcl|Aclame:pro 535 N 535 (535) Q Consensus 535 ~ 535 (535) . T Consensus 447 ~ 447 (526) T protein:vir:79 447 Q 447 (526) T ss_pred h Confidence 0 No 140 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=96.25 E-value=0.00083 Score=37.48 Aligned_cols=393 Identities=13% Similarity=0.119 Sum_probs=146.5 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |-|+|.+... +. ...+..-.|+.++-.. .|+.. T Consensus 3 ~~~~~~~~~~---~~---~~~~~~~~~~~~~~~g---------------------------------~~~~~-------- 35 (417) T protein:vir:38 3 LFRGLATEVD---PH---WADHLLDSGVIPSFRG---------------------------------GYLGI-------- 35 (417) T ss_pred cccccccCCC---cc---chhhhcccccccccCC---------------------------------ceech-------- Confidence 2233222211 00 0111111111111110 01100 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---cc--cccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEE Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RD--PIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAA 155 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~--p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~ 155 (535) .+...-++| -.+..+-+.++++.|+ +. .+.+.+ .+..++..-=....+-.+|.+.+....+.+|.+| T Consensus 36 ------~Al~~~~V~-~cv~~ia~~iA~lp~~~~~~~~~~~~~~~-~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y 107 (417) T protein:vir:38 36 ------SALRNSDVL-TAVSIVSGDVSRFPLVITDSSTDEVIDLA-NIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAY 107 (417) T ss_pred ------hhcccHHHH-HHHHHHHHhhccCeeEEEEcCCcceeccc-hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeE Confidence 011111222 2223333333333331 11 111212 2334443222245678889999999999999999 Q ss_pred EEEeecCCCcccchHHHHhccCCcE-EEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecC Q lcl|Aclame:pro 156 IFTDYPNVGRPVTVLEQKLGLYRPT-ITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNA 234 (535) Q Consensus 156 vlVD~p~~~~~~t~ad~~~~~~rPy-~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~ 234 (535) ++|.....+. +|. +..+.|..|. + ...+++. -.|++-.. T Consensus 108 ~~i~r~~~g~------------~~~~l~~l~p~~v~-----------------v---~~~~~~~------~~y~~~~~-- 147 (417) T protein:vir:38 108 SRIVRDPITN------------EPAMFEFYAPSQTQ-----------------V---DTSDPDN------IIYRFTPY-- 147 (417) T ss_pred EEEEEcCCCC------------EEEEEEEeCCceEE-----------------E---EEcCCCe------EEEEEEEc-- Confidence 9998654332 132 3344554441 1 0011110 01111111 Q ss_pred CceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH-HHHH Q lcl|Aclame:pro 235 EGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE-MAFV 313 (535) Q Consensus 235 ~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~-~l~~ 313 (535) +|... + ..+.+ .+|-| .....+...|.+|+.-++.. +........+.. .... T Consensus 148 ~~~~~-~----------------~~~~~------dviH~---r~~~~d~~~G~s~l~~~~~~-i~~~~~~~~~~~~~f~n 200 (417) T protein:vir:38 148 NSSMQ-K----------------VCGFE------DVIHW---KFFSYDTIMGRSPLLSLGDE-IGLQESGVSTLQKFFKS 200 (417) T ss_pred CCcEE-E----------------EecCc------ceEEe---cCCCCCCccccCHHHHHHHH-HHHHHHHHHHHHHHHhc Confidence 01100 0 00000 11222 11122335688888766542 222222222222 2344 Q ss_pred hcCceeEeeCC--CCccchhccCc--ceeeec--CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhh Q lcl|Aclame:pro 314 AGQPTAFFTGL--TKDWVEDVFKD--FKVHLG--SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANL 383 (535) Q Consensus 314 ~~~P~~~~~G~--~~~~~~d~~~~--~~i~iG--~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~ 383 (535) .+.|-.+++-- -.++..+..+. +...-| +...+.++.+.++.-++.++..... +..+-...+++. +...+ T Consensus 201 g~~p~~il~~~~~l~~e~~~~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~ 280 (417) T protein:vir:38 201 GLKGSIIKAKESRLSAEARQKIREDFERAQAGADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYR 280 (417) T ss_pred cCCCcEEEEeCCCCCHHHHHHHHHHHHHHhcccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHH Confidence 46676665521 11111111110 011222 2345567877777766666654332 222222233322 23334 Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 384 LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEW 463 (535) Q Consensus 384 l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~ 463 (535) +.......+..+.. ..--...|.-++..+++++++.|- ... ......|. |....++.....++.+++ T Consensus 281 lg~~~~~s~~e~~~--~~~~~~tl~P~~~~ie~~l~~~Ll--~~~-----~~~~~~~~----fd~~~l~~~~~~~~~~~~ 347 (417) T protein:vir:38 281 LAQNSPNQSVKQLA--DDYIRNDLPFYFEPITSEFELKLL--DDA-----QRHQYCIG----FDTKSVNGLPIADVNTAV 347 (417) T ss_pred hCCCCcchhHHHHH--HHHHHHHHHHHHHHHHHHHHhhhc--Chh-----hcccceEE----echhhhhHHHHHHHHHHH Confidence 42211111111111 122245677777777777765441 110 01112333 333334444456677889 Q ss_pred hcCCCCHHHHHHHHHhCCCCC--ccCCHHHHHHHH---HhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 464 QQGAITFKEMRAGLRRAGVAS--EDDAKAETEGKA---TVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 464 ~~G~is~et~~~~L~r~gvl~--~~~~~eee~~~i---~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) ++|.++.-.+++.+ |+-+ ..+. ++..... ..+..+. ...+..++..+|.++.+..++++|.+.-+ T Consensus 348 ~~G~~T~NE~R~~~---gl~pi~~g~~-d~~~~~~n~~~~d~~~~-~~~~~~~~~kgg~~~~~~~~~~~~~~~~~ 417 (417) T protein:vir:38 348 NGGLWTGNEGRAEL---GKKPLKDPNM-DRIQSTLNTVFLDQKEA-YQAEHAAELKGGDTNAKGNQNGSGTNANS 417 (417) T ss_pred hCCCcCHHHHHHHh---CCCCCCCCCC-Ceeeecccccccccccc-cccccccccCCCCCCCCCCCcCCCCcCCC Confidence 99999998887654 3221 1110 1000000 0000000 00011122223333444444444333322 No 141 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=96.15 E-value=0.00094 Score=37.17 Aligned_cols=372 Identities=10% Similarity=0.028 Sum_probs=153.3 Q ss_pred ccCCCCCccCHHHHHHHHHHHHHHHHhcChHHH-H-HHHhhhCCCCCC------C-CCChhhHHHHHHHHhhhccchhHH Q lcl|Aclame:pro 30 PSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAI-K-AKREEYLPMPSV------D-SRDEEQRRRYETYLQRAIFYNVTA 100 (535) Q Consensus 30 ~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~-~-~~g~~YLP~~~~------~-~~~~E~~~~Y~~rl~rA~~~n~~~ 100 (535) -.|+ +-+.+.....- . .....+.+.... . ..+. ..+ .-..|.-.+.+. T Consensus 1 m~m~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~v--~~~~al~~~~v~ 57 (392) T protein:vir:74 1 MILP------------------ILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNN---EWV--SARAALRNSDLF 57 (392) T ss_pred Ccch------------------hhhhhhcccCcccccccccccccCchhhhhhhccCCCC---ccc--chhhhhcchHHH Confidence 1111 10100000000 0 000000000000 0 0000 000 001122234444 Q ss_pred HHHHHHhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcE Q lcl|Aclame:pro 101 RTLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPT 180 (535) Q Consensus 101 ~tv~~l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy 180 (535) ..|+.++..+-+-+..+. ......|.+..+ ...+-.+|.+.+....+.+|.+++++.....|.. -- T Consensus 58 ~~v~~ia~~ia~lp~~~~-~~~~~~l~~~PN-~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~------------~~ 123 (392) T protein:vir:74 58 SIILQLSSDLAIVKINAE-KKKNQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGAD------------MK 123 (392) T ss_pred HHHHHHHHhhccCceeec-cchhhhhhhhcC-CCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcE------------EE Confidence 555555555533332221 111233444443 3578899999999999999999999987655432 14 Q ss_pred EEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceee Q lcl|Aclame:pro 181 ITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVP 260 (535) Q Consensus 181 ~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~ 260 (535) +..++|..|- ++ .+.++ ... .|++..- ..... .... T Consensus 124 L~~i~~~~v~---------------v~-----~~~~~---~~~--~y~~~~~--------------~~~~~-----~~~~ 159 (392) T protein:vir:74 124 WEYLRPSQVN---------------TY-----YFEYE---NGM--YYNITFD--------------DPKIE-----PILQ 159 (392) T ss_pred EEEEcCceeE---------------EE-----EcCCC---ceE--EEEEEec--------------CCccc-----eeEE Confidence 4555555440 11 11111 111 1111100 00000 0000 Q ss_pred eccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH-HHHHhcCceeEeeCCCC--ccchhccC-c Q lcl|Aclame:pro 261 TDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE-MAFVAGQPTAFFTGLTK--DWVEDVFK-D 335 (535) Q Consensus 261 ~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~-~l~~~~~P~~~~~G~~~--~~~~d~~~-~ 335 (535) . +-.. ++++ +....+...|.+|+..+... +........+.. .....+.|..+++--.. ........ . T Consensus 160 ~-----~~~e--vih~~~~~~~~~~~G~s~i~~~~~~-i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~~~~~~~ 231 (392) T protein:vir:74 160 A-----PQSD--LIHMKLLSIDGGKTGISPLYSLRRE-SKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRS 231 (392) T ss_pred E-----cCcc--EEEecCCCCCCccccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHH Confidence 0 0011 1222 22223445688888766543 333333333333 34556777777652111 11110000 0 Q ss_pred ceee--ecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH---hhhhhcccccccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 336 FKVH--LGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM---GANLLVKSGGNRTFGEAQQEEASEQSILSA 409 (535) Q Consensus 336 ~~i~--iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l---ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~ 409 (535) ..+. ..+..++.++.+.++.-+..++.... .+..+....+++++ ...++.....+.+..+... +--...|.- T Consensus 232 ~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~e~~~--~~~~~~l~p 309 (392) T protein:vir:74 232 RSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQSSIQQIS--GMYASALNR 309 (392) T ss_pred HHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccHHHHHH--HHHHHHHHH Confidence 1111 12234566787777666665554433 23334444455442 3444432222122112211 122445666 Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCH Q lcl|Aclame:pro 410 CTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAK 489 (535) Q Consensus 410 ~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~ 489 (535) ++..+++++++.|- . .+++.+...|.. ........+-+++.+|.+++...++.+.+.|+.+.+. . T Consensus 310 ~~~~ie~~l~~~l~-------~-----~~~~~~~~~~~~--d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~pne~-r 374 (392) T protein:vir:74 310 YLRPAISELEYKLS-------D-----HISVNMRPAIDP--LGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDL-P 374 (392) T ss_pred HHHHHHHHHHHhcc-------c-----hhcccchhhhcC--CHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCcccc-c Confidence 77777777766541 1 122222222221 1234566777899999999999999999988874332 2 Q ss_pred HHHHHHHHhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 490 AETEGKATVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 490 eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) +. .+.++.. ++..++-.+ T Consensus 375 ~~---------enl~~~~------~Gd~~~p~p 392 (392) T protein:vir:74 375 AP---------ENTNKKT------TGQSNEPVP 392 (392) T ss_pred hh---------cCCCCCC------CCCCCCCCC Confidence 11 1122111 111122222 No 142 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=96.13 E-value=0.00097 Score=37.10 Aligned_cols=399 Identities=11% Similarity=0.064 Sum_probs=150.9 Q ss_pred CCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH-hh-----------hCC-CCCCCCCChhhHHHHHH Q lcl|Aclame:pro 22 APPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR-EE-----------YLP-MPSVDSRDEEQRRRYET 88 (535) Q Consensus 22 ~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g-~~-----------YLP-~~~~~~~~~E~~~~Y~~ 88 (535) -||--|+|++ .+++.++.....+...+ .. +.+ -..+.... -+. T Consensus 1 ~~~~~~~g~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~------~~~ 56 (432) T protein:vir:97 1 MPDEKKLGLL------------------GQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVN------ADA 56 (432) T ss_pred CCCcccCchh------------------hhhHhhcCCccccccccccccccCchhhhhhcccccccCcccc------hHh Confidence 3333334333 12222221111100000 00 000 00000001 122 Q ss_pred HHhhhccchhHHHHHHHHhhhhhc---ccc--ccc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecC Q lcl|Aclame:pro 89 YLQRAIFYNVTARTLDGMMGQVFS---RDP--IRQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPN 162 (535) Q Consensus 89 rl~rA~~~n~~~~tv~~l~G~lF~---k~p--~~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~ 162 (535) .++.+..+-....+-+.++.+.|. +.. ... ....+..++..-=....+-.+|.+.+....+.+|-||+++.... T Consensus 57 a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~~ 136 (432) T protein:vir:97 57 IMRLDAVAACVKLVSQAVAAMPLMMYMRTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVTD 136 (432) T ss_pred hhcchHHHHHHHHHHHhhccCceEEEEecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEecC Confidence 333333344445555555555442 211 111 22334444432112346788999999999999999999997542 Q ss_pred CCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEE Q lcl|Aclame:pro 163 VGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVER 242 (535) Q Consensus 163 ~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~ 242 (535) +.+ --+..+.|..|- + ..+.++ ...|++.. .+|... . T Consensus 137 -g~~------------~~L~~l~p~~v~-----------------v----~~~~~g-----~~~y~~~~--~~g~~~--~ 173 (432) T protein:vir:97 137 -GRI------------ESLQYLANDRLT-----------------I----TTDTKG-----NTAYRYRR--TDGQMI--D 173 (432) T ss_pred -CcE------------EEEEEEcCcceE-----------------E----EEcCCC-----cEEEEEEe--cCceEE--E Confidence 221 123344444330 0 011111 01122111 112110 0 Q ss_pred EeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEe Q lcl|Aclame:pro 243 WRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFF 321 (535) Q Consensus 243 w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~ 321 (535) ++. ..| +.+.....+...|.+||.-++. .+.......++... ....+.|-.++ T Consensus 174 ----------------~~~-------~~i--ih~r~~~~dg~~G~spi~~~~~-~i~~~~a~~~~~~~~f~ng~~~~gil 227 (432) T protein:vir:97 174 ----------------IPR-------QQI--WKIMGYSLDGENGLSAIRYGAQ-IFGTAIAAEAQAARAFRNGQLQSVYY 227 (432) T ss_pred ----------------Ecc-------ccE--EEecCcCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCcceeE Confidence 000 001 1111111223467888876653 34433334444333 34456776666 Q ss_pred eCCCC--ccchhccCcceee--ecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhcccccccch Q lcl|Aclame:pro 322 TGLTK--DWVEDVFKDFKVH--LGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTF 393 (535) Q Consensus 322 ~G~~~--~~~~d~~~~~~i~--iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta 393 (535) +--.. ++..+...+ .+. ..+..++.++.+.++..+..++..... +..+....+++. +...++.......++ T Consensus 228 ~~~~~l~~e~~~~~~~-~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~ 306 (432) T protein:vir:97 228 QIDRFLTDDQYDSFSK-KVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTS 306 (432) T ss_pred ecCCCCCHHHHHHHHH-HHhhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccc Confidence 53211 111111111 111 122346667877776666655544332 222333333333 334444322222222 Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCH Q lcl|Aclame:pro 394 GEAQQEEA---SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITF 470 (535) Q Consensus 394 ~~a~~~~~---~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~ 470 (535) ..+.++.+ --...|.-++..+++++++-| +.... .....|+++.+=.......+.+.++.+++++|.++. T Consensus 307 ~~s~~e~~~~~f~~~tl~P~~~~ie~~ln~kL------l~~~e-~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~ 379 (432) T protein:vir:97 307 WGSGIESQQLGFLTMTLSPWLRRIEQSIALNL------LTPAE-RRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTR 379 (432) T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCccc-cCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCH Confidence 22222222 123456666666666665432 11111 112334444332222222345677888999999999 Q ss_pred HHHHHHHHhCCCCCccCCHHHHHHHHHhchh--hcccCCCcCCCCCCCcccccccccccC Q lcl|Aclame:pro 471 KEMRAGLRRAGVASEDDAKAETEGKATVEFI--AKTAAAGKVGDAASGGTNKAKLNNGNG 528 (535) Q Consensus 471 et~~~~L~r~gvl~~~~~~eee~~~i~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (535) -+.++.+ |+ ++....++. --...... +.....+.+.+ +++++..+.|+-|. T Consensus 380 NE~R~~~---gl-pp~~g~~~~-~~~~~~~~pl~~~~~~~~~~~--~~~~~~~~~~~~~~ 432 (432) T protein:vir:97 380 DEAREIE---GL-PKLGGNAAV-LTVQSAMVPLDSIGLQASPEP--ASGLGNQQQDKVSK 432 (432) T ss_pred HHHHHHh---CC-CCCCCCcce-EeecccccchhhhcccCCCCC--CCCCCCcccccccC Confidence 8877644 32 221111000 00000000 00000011111 11111122222222 No 143 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=96.08 E-value=0.001 Score=36.95 Aligned_cols=399 Identities=14% Similarity=0.097 Sum_probs=170.6 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhh-CCC-CCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEY-LPM-PSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQ 109 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~Y-LP~-~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~ 109 (535) |-.++. .-+..-..--|..++..+.|.+......... -|- .... ...++-. =+..++.+..+-.+..+-+.++++ T Consensus 1 ~~~~~~-~~~~~~~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~-~~~al~~~~v~~cv~~Ia~~iA~l 77 (424) T protein:vir:18 1 MEEPKY-TIDLRTNNGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGY-LGDSSIN-DERILQISTVWRCVSLISTLTACL 77 (424) T ss_pred CCCCcc-ccccCCCCchHHHHHhhccccccccccchhhccccccccc-ccccccc-HHHhhccHHHHHHHHHHHHhhccC Confidence 442222 2233344566888887776643221110000 010 0000 0000000 023344444444455555555555 Q ss_pred hhc---ccc-----ccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEE Q lcl|Aclame:pro 110 VFS---RDP-----IRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTI 181 (535) Q Consensus 110 lF~---k~p-----~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~ 181 (535) .|. +.. .+.....+..++.+-=....+-.+|.+.+....+.+|.+|+++.....|.+ -.+ T Consensus 78 p~~vy~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~------------~~L 145 (424) T protein:vir:18 78 PLDVFETDQNDNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDV------------ISL 145 (424) T ss_pred ceEEEEeccCCceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcE------------EEE Confidence 442 111 112334455665443335678899999999999999999999987655532 145 Q ss_pred EEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeee Q lcl|Aclame:pro 182 TLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPT 261 (535) Q Consensus 182 ~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~ 261 (535) ..++|..|. .. ..++ +.. |++ . .+|.. . ..+. T Consensus 146 ~~l~~~~v~---v~------------------~~~~----~~~--y~~-~--~~g~~--------------~----~~~~ 177 (424) T protein:vir:18 146 LPLQSANMD---VK------------------LVGK----KVV--YRY-Q--RDSEY--------------A----DFSQ 177 (424) T ss_pred EEecCcceE---EE------------------EcCC----eEE--EEE-E--eCCeE--------------E----Eecc Confidence 555555541 00 0011 011 110 0 01110 0 0000 Q ss_pred ccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCCccchhc---cCc-- Q lcl|Aclame:pro 262 DGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTKDWVEDV---FKD-- 335 (535) Q Consensus 262 ~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~~~~~d~---~~~-- 335 (535) + . ++.+.....+...|.+|+.-+. -.+.......++...+ ...+.|..+++-......++. .+. T Consensus 178 ~-------e--Vihir~~~~dg~~G~spi~~~~-~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~ 247 (424) T protein:vir:18 178 K-------E--IFHLKGFGFTGLVGLSPIAFAC-KSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQVEENF 247 (424) T ss_pred c-------c--EEEecCcCCCCcccccHHHHHH-HHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHHHHHH Confidence 0 0 1222112233456788886554 3455555555555444 444578777763222111111 000 Q ss_pred ceeeecC--cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHH---HHHHHHH Q lcl|Aclame:pro 336 FKVHLGS--RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQE---EASEQSI 406 (535) Q Consensus 336 ~~i~iG~--~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~---~~~~~S~ 406 (535) ....-|. ...+.++.+.++..+..++..... +..+-...+++. +...++.... ..+...+..+ .+--... T Consensus 248 ~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~t~~~sn~eq~~~~f~~~t 326 (424) T protein:vir:18 248 KEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVE-KSTSWGSGIEQQNLGFLQYT 326 (424) T ss_pred HHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCC-CcccccccHHHHHHHHHHHH Confidence 0112222 235667877777666665544322 222222233322 2333442211 1222112111 1222445 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 407 LSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASED 486 (535) Q Consensus 407 L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~ 486 (535) |.-++.++++++++.|-- .. ......|+++.+=.......+.+.++.+++++|.++.-++++.+ | +++. T Consensus 327 l~P~~~~ie~~ln~~L~~-----~~--~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~---g-l~pi 395 (424) T protein:vir:18 327 LQPYISRWENSIQRWLIP-----SK--DVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTD---N-MPPL 395 (424) T ss_pred HHHHHHHHHHHHHhhcCC-----cc--ccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---C-CCCC Confidence 666677777766654411 10 11124455554323223234456677789999999988776543 3 2222 Q ss_pred CCHHHHHHHHHhchhhcccCCCcCCCCCCCccccccccccc Q lcl|Aclame:pro 487 DAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGN 527 (535) Q Consensus 487 ~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (535) ..-++ . ....+..+-+. -+.+..+.|||+ T Consensus 396 ~ggD~----~------~~~~n~~~l~~--~~~~~~~~~n~a 424 (424) T protein:vir:18 396 PGGDV----A------MRQAQYVPITD--LGTNKEPRNNGA 424 (424) T ss_pred CCcCe----e------eeccCccchhh--hhccCCccccCC Confidence 11000 0 00111111111 112233444444 No 144 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=96.08 E-value=0.001 Score=36.95 Aligned_cols=398 Identities=13% Similarity=0.098 Sum_probs=157.7 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |--+|--=||. +++. .....+..+.+.++|... .. ..++ . T Consensus 1 m~~~~~f~~~~------------~~~~----------------~~~~~~~~~~~~~~~~~~--~~-~~~v--------~- 40 (416) T protein:vir:12 1 MLLERMFEKRS------------GSSD----------------HEDGFNNILLNMFGGRKT--AS-GERV--------S- 40 (416) T ss_pred Cccchhccccc------------Cccc----------------cCccchhHHHHhhcCccc--cc-Ccee--------c- Confidence 21111100010 0000 000122334555555221 00 1111 1 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---cccc-c-cc--CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCc Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDPI-R-QL--PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGR 153 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p~-~-~~--p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~ 153 (535) ....++.+..+-....+-+.++++.|+ +... . .. .+...-|...-+ ...+-.+|.+.+....+.+|. T Consensus 41 -----~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~~~~~~~~~l~~~l~~~PN-~~~t~~~f~~~~v~~lll~Gn 114 (416) T protein:vir:12 41 -----ESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDGGIERKPEHKSAHAVYARPN-PYMTAFTWKKLMMTHVLTWGN 114 (416) T ss_pred -----hhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCccccccccHHHHHHHhhcc-cCCCHHHHHHHHHHHHhhcCC Confidence 123333333344555555555555442 2211 1 11 122233433333 346788999999999999999 Q ss_pred EEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeec Q lcl|Aclame:pro 154 AAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLN 233 (535) Q Consensus 154 ~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~ 233 (535) +++++.....|.+ .-+..++|..|- |. .+++++ .. .|++ . T Consensus 115 a~~~i~r~~~G~~------------~~L~~l~~~~v~---------------v~-----~~~~~~---~~--~~~~-~-- 154 (416) T protein:vir:12 115 AYSYIQFGSHGYP------------EALFPLRPDYTN---------------AY-----VHPTTG---ML--WYQT-V-- 154 (416) T ss_pred eEEEEEECCCCcE------------EEEEEECCcceE---------------EE-----EeCCCc---EE--EEEE-e-- Confidence 9999987655432 245566665541 10 111110 00 0000 0 Q ss_pred CCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH-HHHH Q lcl|Aclame:pro 234 AEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE-EMAF 312 (535) Q Consensus 234 ~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~-~~l~ 312 (535) .+|. . .. .+ +-..|-|- ....+...|.+|+.-++.. +........+. .... T Consensus 155 ~~g~-------------~-~~----~~------~~eiih~~---~~~~~~~~G~s~i~~~~~~-i~~~~~~~~~~~~~~~ 206 (416) T protein:vir:12 155 LNGK-------------A-IE----LY------DYEVLHFK---GLSTDGIHGKSPIGVVREH-IGAQAAATKYNAKLYK 206 (416) T ss_pred cCCe-------------E-EE----ec------CccEEEec---CcCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHh Confidence 0110 0 00 00 01111111 1122335678888666543 33333333343 3345 Q ss_pred HhcCceeEeeCCCCccchhcc---Cc--ceeeecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhh Q lcl|Aclame:pro 313 VAGQPTAFFTGLTKDWVEDVF---KD--FKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANL 383 (535) Q Consensus 313 ~~~~P~~~~~G~~~~~~~d~~---~~--~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~ 383 (535) ..+.|-.+++--.. ..++.. .. +.. .+...++.++.+.++..+..++..... +..+....+++. +...+ T Consensus 207 ng~~p~~il~~~~~-~~~e~~~~~~~~~~~~-~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~ 284 (416) T protein:vir:12 207 NEATPRGILKVPAF-LDEKPKENVRKEWKRV-NKVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHK 284 (416) T ss_pred cCCCCceEEecCCC-CCHHHHHHHHHHHHHH-hcCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHH Confidence 56778777763211 111100 00 011 134456677877777766665544332 222222333332 23344 Q ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 384 LVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEW 463 (535) Q Consensus 384 l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~ 463 (535) +.......-++.......--...|.-++..+++++++-|- ..+.. .....|+++.+=.......+.+.++-+++ T Consensus 285 lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~l~--~~~~~----~~g~~i~fd~~~l~~~d~~~~~~~~~~~~ 358 (416) T protein:vir:12 285 LNELDKATFSNIEHQSIEYVRNTLQPWIVNFEQELNVKLF--LDHDQ----KSGHYVKFNIDSELRGDSKTQAEYLKTLH 358 (416) T ss_pred hCCccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--Cchhh----cCCceEEeechhhhccCHHHHHHHHHHHH Confidence 4322111111111111122344566777777776654321 11110 11123444443222222344566777899 Q ss_pred hcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 464 QQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 464 ~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) .+|.++.-++++.+ |+ ++...-++.. . ..+..+.+.. +.....+...+.+||...++ T Consensus 359 ~~G~~T~NE~R~~~---gl-~Pi~ggd~~~-------~---~~n~~~~~~~-~~~~~~~~~~~~~gge~~~~ 415 (416) T protein:vir:12 359 ETGVLNKDEIRELL---ER-NPIENGDKYI-------S---SLNYVFLDFL-EEYQRLKAGGAMKGGDNKNE 415 (416) T ss_pred hCCCcCHHHHHHHh---CC-CCCCCcceee-------e---cccccccccc-chhhccccccccCCCCCcCC Confidence 99999998887654 32 2221111100 0 0111111100 00111111111222222222 No 145 >protein:vir:78942 Length: 510 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1860 # MgeName: LKD16 # Cross-refs: genbank:acc:YP_001522822;genbank:gi:158345057;genbank:GeneID:5687432 Probab=95.85 E-value=0.0014 Score=36.31 Aligned_cols=430 Identities=10% Similarity=0.011 Sum_probs=166.5 Q ss_pred CCCCCccCHHHHHHHHHHHHHHH-HhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh--- Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMD-CLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM--- 107 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d-~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~--- 107 (535) |- ......|...+. -+ +..+++-..-.||..-..+.+... .++.+ .|=+...+.++.++ T Consensus 1 mk---------~~~~~~~~~lkr~~~--e~~w~e~a~~tlP~~~~~~~~~~~-----~~~~~-~~dstg~~a~~~LAa~l 63 (510) T protein:vir:78 1 MK---------STAAMLWEKLRDGSV--EQRAIEFAKTTLPYLMVDPMSGSR-----GVVEH-DFQSAGALLVNNLAAKL 63 (510) T ss_pred Ch---------hHHHHHHHHHhccch--HHHHHHHHHhhccccccCCCCccc-----ccccC-cccchHHHHHHHHHHHH Confidence 43 122333433321 22 445555555567743322222111 11222 23334444455444 Q ss_pred -hhhhcc-cc--ccccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCC Q lcl|Aclame:pro 108 -GQVFSR-DP--IRQLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNV 163 (535) Q Consensus 108 -G~lF~k-~p--~~~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~ 163 (535) +.+|.- .| .+++.+ .++.+++.|.. ..++++.-+..+..+...+|.+.++++.+ T Consensus 64 ~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~~~~-- 141 (510) T protein:vir:78 64 ARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYRNSD-- 141 (510) T ss_pred HHhhcCCCCcccccCCChHHhhhcccCcchHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEEeCC-- Confidence 444431 11 122222 23334333321 34577888888889988999988888733 Q ss_pred CcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCccc------------ceeeEEEE Q lcl|Aclame:pro 164 GRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFET------------TYVQQWRV 229 (535) Q Consensus 164 ~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~------------~~~~~~rv 229 (535) +. .+..|+-.+. -.... +...+.-|+.++.+... ...|+. +.++.|.. T Consensus 142 ~~--------------~~~~~pl~~y---~v~~d-~~G~vd~i~rr~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~ 203 (510) T protein:vir:78 142 EA--------------TVVAWSLRSY---AVRRD-ATGRWMDIVLKQRYKSKDLDDVYKQDLMRAGRNLSGSGSVDLYTH 203 (510) T ss_pred CC--------------eEEEEEccee---EEeeC-CCcCeeEEEeeeeccHHHHHHHhhHHhhhhhhccCCCceEEEEEE Confidence 11 2445554442 22222 22233335555544311 122321 12222222 Q ss_pred EeecCCce-EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHH----HHHHHHHHHHhh Q lcl|Aclame:pro 230 LQLNAEGN-YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLL----DLCEVNIGHYRN 303 (535) Q Consensus 230 l~l~~~g~-y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~----dLA~ln~~hy~~ 303 (535) .++...+. ....+|. +.++ ..+ ...++.++..-||++... ...+...|..|-. |+..||.= . T Consensus 204 V~~~~~~~~~~~sv~~-e~dg-------~~i-~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l---~ 271 (510) T protein:vir:78 204 VQRRKGTAMDYAEMYH-EIDG-------VRV-GETGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLL---S 271 (510) T ss_pred EEeecCCCCcEEEEEE-EecC-------eee-ccccccccccCCeeeeeeeecCCCccccchHHHHHHHHHHHHHH---H Confidence 22221111 1111221 1111 111 123343444444443322 2233455555544 45444432 2 Q ss_pred HHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCC-CCccceeecCc-chh--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 SADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQ-GATAGILQITP-NSV--PFEAMTHKESQMIAM 379 (535) Q Consensus 304 ~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~-~~~~~~~e~~~-~~l--~~~~l~~~e~qm~~l 379 (535) .+.+..+......|.++-.+.. +.+..+.-|.+..+. |. ..+.+.++... ..+ ..+.++++++++... T Consensus 272 ~~~l~~a~~a~~~~~lv~p~g~-------~~~~~l~~~~~g~~v-~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~a 343 (510) T protein:vir:78 272 EKLGLYELESLEVLNLVDEAKG-------AVVDDYQDAEMGDYV-PGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQA 343 (510) T ss_pred HHHHHHHHHhhcCCcccCCccc-------cchhhhccCCCceee-cCCcccccccccCcccchHHHHHHHHHHHHHHHHH Confidence 2333334444445544443211 122233444433332 22 12344455432 223 346777887777653 Q ss_pred hhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCC-CCCceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GANLL-VKSGGNRTFGEAQQEEASEQSILSACTKNV-----SMAFRKALRWANQFQTGI-VNDETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~-----~~a~~~~lr~~a~~~g~~-~~~~~~~v~~n~df~~~~~d 452 (535) =.-.+ ..++...||++...+..-....|.-+-.++ .-.+++++.++.+- |.- ..++.+...+ ..|...-.- T Consensus 344 F~~~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r~-gl~p~p~~~~~~~~-v~~is~Lar 421 (510) T protein:vir:78 344 FMYGANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDDA-LLQGLITKQHKPAI-ETGLPALSR 421 (510) T ss_pred HhhccccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCccccccee-eecccHHHH Confidence 21112 334455799998876655444555544443 33445555555442 211 1222222111 223322112 Q ss_pred HHHHHHH---HHHHh--------cCCCCHHHHHHH-HHhCCCCCc-cCCHHHHHHHHHhchhh---cc-----cCCCcCC Q lcl|Aclame:pro 453 PNERAEL---ILEWQ--------QGAITFKEMRAG-LRRAGVASE-DDAKAETEGKATVEFIA---KT-----AAAGKVG 511 (535) Q Consensus 453 ~~~~~al---~~l~~--------~G~is~et~~~~-L~r~gvl~~-~~~~eee~~~i~~e~~~---~~-----~~~~~~~ 511 (535) +|.+..+ ...++ .-.|..+.+.+. ....||-+. -...+|+.+.+.++... +. .....-+ T Consensus 422 aq~~~~l~~~~q~l~~~~~~~q~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~~q~~~~~~~~~a~~~~~~ 501 (510) T protein:vir:78 422 SAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEEQRRQAAQAQAAQETLLEGAS 501 (510) T ss_pred HHHHHHHHHHHHHHHHhcChhhhhhcCCHHHHHHHHHHHhCCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh Confidence 2222222 11111 112334444443 345676333 22233333333222110 00 0011111 Q ss_pred CCCCCcccc Q lcl|Aclame:pro 512 DAASGGTNK 520 (535) Q Consensus 512 ~~~~~~~~~ 520 (535) +.++..... T Consensus 502 ~~~~~~~g~ 510 (510) T protein:vir:78 502 DMTNALAGV 510 (510) T ss_pred hhcccCCCC Confidence 111111111 No 146 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=95.63 E-value=0.0017 Score=35.74 Aligned_cols=402 Identities=13% Similarity=0.069 Sum_probs=159.7 Q ss_pred CcccccCCCCCcc-CHHHHH-HHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHH Q lcl|Aclame:pro 26 SGLGPSLPNVGYQ-RVEFGE-MLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTL 103 (535) Q Consensus 26 ~~~~~~M~~v~~~-hp~y~~-~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv 103 (535) -|+--.|.+..++ .+.... ..+.+.+ .+.+++.. +..... -+..++.+..+-.+..+- T Consensus 1 M~~~~~~f~~~~r~~~~~~~~~~~~~~~-~~~~g~~~-------------~~~~v~------~~~al~~~~v~~~i~~ia 60 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIELNKDDEKL-LEWLGISP-------------STISVK------GKNALKVATVFACIKILS 60 (429) T ss_pred CchhhhhhcccccCcccccccCCChHHH-HHHhcCCC-------------Ccceec------hhhhhccHHHHHHHHHHH Confidence 3332223222111 111000 0011111 11111100 000000 011223333344445555 Q ss_pred HHHhhhhhc---cc-cc--cccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccC Q lcl|Aclame:pro 104 DGMMGQVFS---RD-PI--RQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLY 177 (535) Q Consensus 104 ~~l~G~lF~---k~-p~--~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~ 177 (535) +.++++.|. +. .. ......+..++..-=..+.+-.+|.+.+....+.+|.+++++.....|.+. T Consensus 61 ~~ia~l~~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~---------- 130 (429) T protein:vir:10 61 ESVSKLPLKIYQEDEYGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQ---------- 130 (429) T ss_pred HhhccCceEEEEecCCceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE---------- Confidence 555555543 21 11 112334556553222256788999999999999999999999876555321 Q ss_pred CcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccc Q lcl|Aclame:pro 178 RPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSK 257 (535) Q Consensus 178 rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~ 257 (535) -+..++|..|- | ..+++++-......|.... ..|.. . T Consensus 131 --~L~~i~~~~v~---------------v------~~~~~~~~~~~~~~~~~~~--~~g~~--------------~---- 167 (429) T protein:vir:10 131 --ALWPIDASKVT---------------V------YIDDVGLLNSKTKMWYVVN--TGGQQ--------------R---- 167 (429) T ss_pred --EEEEEcCceeE---------------E------EEcCcccccccceEEEEEc--cCCeE--------------E---- Confidence 45556665541 1 1111111111111111110 01110 0 Q ss_pred eeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCC---Cccchhc Q lcl|Aclame:pro 258 HVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLT---KDWVEDV 332 (535) Q Consensus 258 ~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~---~~~~~d~ 332 (535) ..+.+ . ++.+ .....+...|.+|+.-++.. +........+... ....++|-.+++.-. ++..... T Consensus 168 ~~~~~------e---vih~~~~~~~~~~~G~s~i~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~ 237 (429) T protein:vir:10 168 VLKPE------E---ILHFKNGITLDGLVGVPTMEYLKST-LENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVF 237 (429) T ss_pred EEccc------c---EEEecCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHH Confidence 00000 0 2222 11233445678888776543 3443444444333 345567877766422 1111110 Q ss_pred cCc-ceeeec---CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHH Q lcl|Aclame:pro 333 FKD-FKVHLG---SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQ 404 (535) Q Consensus 333 ~~~-~~i~iG---~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~ 404 (535) ... +...-| ...++.++.+.++..+..++..... +..+....+++. +...++.......-++.......--+ T Consensus 238 ~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f~~ 317 (429) T protein:vir:10 238 RENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYT 317 (429) T ss_pred HHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHH Confidence 000 011122 3345667877776666655544332 222233333333 23334422111111111111112234 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC Q lcl|Aclame:pro 405 SILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVAS 484 (535) Q Consensus 405 S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~ 484 (535) ..|.-++..+++++++-|=--..+ .....|+++.+-.........+.++.+++.+|.++...+++.+ |+ + T Consensus 318 ~~l~P~~~~ie~~ln~kl~~~~~~------~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~---gl-~ 387 (429) T protein:vir:10 318 DTLQATLTMYEQEMTYKLFLDSEL------DKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKE---DL-P 387 (429) T ss_pred HHHHHHHHHHHHHHHHhhcChhhc------CCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-C Confidence 556667777777666433111111 1123355554433333334456777889999999988887654 42 2 Q ss_pred ccCCHHHHHHHHHhchhhcccCCCcCCCC------CCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 485 EDDAKAETEGKATVEFIAKTAAAGKVGDA------ASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 485 ~~~~~eee~~~i~~e~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +...-+ ++-. ..+..+-+. .+|.+++...+.|.- || T Consensus 388 p~~ggD----~~~~------~~n~~~~d~~~~~~~k~g~~~~~~~~~~~e-----~~ 429 (429) T protein:vir:10 388 PEAGGD----RLLV------NGNMLPIDMAGQAYLKGGDTNGEVSKEGNE-----GN 429 (429) T ss_pred CCCCcC----eeee------cccccchhhccccccCCCCCCCCCCCCCCC-----CC Confidence 211101 1100 011111111 112222222222221 12 No 147 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=95.55 E-value=0.0019 Score=35.55 Aligned_cols=375 Identities=10% Similarity=0.036 Sum_probs=152.5 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCC-CCCCChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPS-VDSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~-~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) .|+|=. ............+.|--+.+ ..+++... +...+. ...++. +.+..+|+.+ T Consensus 1 M~~f~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~v~~------~~al~~----~~v~~~i~~i 57 (386) T protein:vir:49 1 MPIFNI-TNLATESPPINQESFFDIAD------------SDFLASLNSSEWVSA------ENALKN----SDLFSIISQL 57 (386) T ss_pred Cchhhh-hccCCCCcccchhhhhhhhh------------ccccccccCCceech------hhhhcc----HHHHHHHHHH Confidence 222211 11111111111111111100 01111110 000110 111222 3334455555 Q ss_pred hhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEech Q lcl|Aclame:pro 107 MGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHP 186 (535) Q Consensus 107 ~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~ 186 (535) ++.+-+-+..+. -.....|.+..+ ...+-.+|.+.+....+.+|-+++++.....|.+ --+..++| T Consensus 58 a~~ia~~p~~~~-~~~~~~l~~~PN-~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~------------~~l~~i~~ 123 (386) T protein:vir:49 58 SNDLATAKITTS-RKQLQGIVDNPS-NNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRD------------MKWEYLRP 123 (386) T ss_pred HHHhhhCceeec-cchhhhhhhccC-CCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcE------------EEEEEecC Confidence 554444333332 112233444443 3568899999999999999999999987655432 14555566 Q ss_pred hhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCC Q lcl|Aclame:pro 187 TSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN 266 (535) Q Consensus 187 ~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 266 (535) .+|- | ...+++. .. . |++.. ........ ...+. T Consensus 124 ~~v~---------------v------~~~~~~~--~~--~-----------y~~~~--~~~~~~~~----~~~~~----- 156 (386) T protein:vir:49 124 SQVS---------------F------NRLDNQN--GL--Y-----------YNITF--DDPHIAPK----QHVPQ----- 156 (386) T ss_pred ceeE---------------E------EEcCCCc--eE--E-----------EEEEE--cCccccce----eEEcc----- Confidence 5541 0 0011110 00 1 11100 00000000 00000 Q ss_pred ccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeC--CCCccchhccCc--ceeee Q lcl|Aclame:pro 267 PFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTG--LTKDWVEDVFKD--FKVHL 340 (535) Q Consensus 267 ~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G--~~~~~~~d~~~~--~~i~i 340 (535) .. ++++ +....+...|.||+.-+.. .+........+... ....+.|..+++- -..++....... ....- T Consensus 157 --~e--vih~~~~~~~~~~~G~s~l~~~~~-~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 231 (386) T protein:vir:49 157 --ND--ILHFRLLSVDGGLTSVSPLMALGR-EFNIQKASDKLTISALKNALNANGILKIKGGGLLDFKTKVSRSRQAMKQ 231 (386) T ss_pred --cc--EEEecCCCCCCccccccHHHHHHH-HHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHHHHHHHHHHHhcc Confidence 01 1222 2222344567888766544 33333344444433 3445678777652 111111100000 11112 Q ss_pred cCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH---hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 341 GSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM---GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSM 416 (535) Q Consensus 341 G~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l---ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~ 416 (535) .+..++.++.+.++.-+..++.... .+..+....+++++ ...++.... ..+++....+. .-...|.-+...+++ T Consensus 232 n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~~~~~~~~-~~~~~i~~~l~~i~~ 309 (386) T protein:vir:49 232 MQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDG-DQQSSLEMIYN-IYFKSVSRYLRPFVS 309 (386) T ss_pred CCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CccchHHHHHH-HHHHHHHHHHHHHHH Confidence 3335566777776666655554433 23344444555442 344443222 22222222221 223345555555555 Q ss_pred HHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHH Q lcl|Aclame:pro 417 AFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKA 496 (535) Q Consensus 417 a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i 496 (535) .+++.| +. .+.+.+ +.............+-+++.+|.++.-.+++.|.+.|+.+.+...-+ T Consensus 310 ~~~~~l-------~~-----~~~~~~--~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~~~~~~~----- 370 (386) T protein:vir:49 310 EMSKKL-------SC-----EVDVDI--SPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPKELPDGK----- 370 (386) T ss_pred HHHHHh-------cc-----hhcccc--hhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCCcCcchh----- Confidence 555443 11 122222 11111111234455667899999999999998888887653321110 Q ss_pred HhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 497 TVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 497 ~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) + ... .+..+|.+|+++ T Consensus 371 --~-~~~-------~~~~gGd~~~~~ 386 (386) T protein:vir:49 371 --N-PNR-------TSLKGGEINEQD 386 (386) T ss_pred --c-cCC-------CCCCCCCCCCCC Confidence 0 001 112234444443 No 148 >protein:vir:6322 Length: 510 # NCBI annotation: head-tail connector protein # Family: family:all:481 # MgeID: mge:132 # MgeName: phiKMV # Cross-refs: genbank:acc:NP_877469;genbank:gi:33300841;uniprot:Q7Y2D5;genbank:GeneID:1482611 Probab=95.54 E-value=0.0019 Score=35.53 Aligned_cols=427 Identities=11% Similarity=0.024 Sum_probs=165.4 Q ss_pred CCCCCccCHHHHHHHHHHHHHHH-HhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh--- Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMD-CLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM--- 107 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d-~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~--- 107 (535) |. ......|...+. -+ +..+++-..-.||..-..+.+.+. .++.+ .|=+...+.++.++ T Consensus 1 mk---------~~~~~~~~~lkR~~~--e~~w~e~a~~tlP~~~~~~~~~~~-----~~~~~-~~dstg~~a~~~LAa~l 63 (510) T protein:vir:63 1 MK---------TTAAMLWEKLRDGSV--EQRAIEFAKTTLPYLMVDPMSGSR-----GVVEH-DFQSAGALLVNNLAAKL 63 (510) T ss_pred Ch---------hHHHHHHHHHhccch--HHHHHHHHHhhccccCCCCCCccc-----cccCC-CccchHHHHHHHHHHHH Confidence 44 223333433321 22 344555555557743222221111 11222 23344445555444 Q ss_pred -hhhhcc--cc-ccccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCC Q lcl|Aclame:pro 108 -GQVFSR--DP-IRQLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNV 163 (535) Q Consensus 108 -G~lF~k--~p-~~~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~ 163 (535) +.+|.- ++ .+++.+ .++.+++.+.. ..++++.-+..+..+...+|.+.+++|-. T Consensus 64 ~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Li~~G~a~l~~~~~-- 141 (510) T protein:vir:63 64 ARSLFPTGIPFFRSELTDAIRREADSRDTDITEVTAALARVDRKATQRLFQNASLAVLTQVIKLLIVTGNALLYRDSD-- 141 (510) T ss_pred HhhhcCCCCcccccCCChHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCeEEEEEcCC-- Confidence 444431 11 122221 23333322221 34578888888999999999998888721 Q ss_pred CcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCccc------------ceeeEEEE Q lcl|Aclame:pro 164 GRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGFET------------TYVQQWRV 229 (535) Q Consensus 164 ~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f~~------------~~~~~~rv 229 (535) +. .+..|+-.+. -.... +...+.-|+.++.+..+. .+|.. +.++.|.. T Consensus 142 ~~--------------~~~~~pl~~y---~v~~d-~~G~vd~i~rr~~~t~~~l~e~~~~~~~~~~~~~~~~~~v~v~~~ 203 (510) T protein:vir:63 142 AA--------------TVVAWSLRSY---AVRRD-ATGRWMDIVLKQRYKSKDLDEEYKQDLMRAGRNLSGSGSVDLYTH 203 (510) T ss_pred Cc--------------EEEEEEccee---EEeeC-CCcCeeEEEeeeeccHHHHhHHhhhhhhccccccCCCcceEEEEE Confidence 11 2445554442 22222 222333355555443211 12211 12222222 Q ss_pred EeecCCce-EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHH----HHHHHHHHHHhh Q lcl|Aclame:pro 230 LQLNAEGN-YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLL----DLCEVNIGHYRN 303 (535) Q Consensus 230 l~l~~~g~-y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~----dLA~ln~~hy~~ 303 (535) .++...+. ....+|.+ .++ ..+ ...++.++..-||++... ...+...|..|-. |+..||.- . T Consensus 204 V~~~~~~~~~~~sv~~e-~dg-------~~~-~~~~~~~~~e~P~~~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l---~ 271 (510) T protein:vir:63 204 VQRKKGTAMEYAELYHE-IDG-------VRV-GKEGRWPIHLCPYIVPTWNLAPGEHYGRGHVEDYIGDFAKLSLL---S 271 (510) T ss_pred EEeecCCCceEEEEEEE-ecC-------cee-ccccccccccCceeeeeeeecCCCccccchHHHHHHHHHHHHHH---H Confidence 22222111 11122211 111 111 122333344445543322 2233455555544 44444432 2 Q ss_pred HHHHHHHHHHhcCceeEeeCCCCccchhccCcceeeecCcccccCCC-CCccceeecCc-chh--HHHHHHHHHHHHHHH Q lcl|Aclame:pro 304 SADYEEMAFVAGQPTAFFTGLTKDWVEDVFKDFKVHLGSRAIIPLPQ-GATAGILQITP-NSV--PFEAMTHKESQMIAM 379 (535) Q Consensus 304 ~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~~~~i~iG~~~~~~lp~-~~~~~~~e~~~-~~l--~~~~l~~~e~qm~~l 379 (535) .+.+..+...+..|.++-.+.. ..+..+.-|....+. |. ....+.++... ..+ ..+.++++++++.+. T Consensus 272 ~~~l~~a~~a~~~~~lv~p~g~-------~~~~~~~~~~~g~~v-~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~rI~~a 343 (510) T protein:vir:63 272 EKLGLYELESLEVLNLVDEAKG-------AVVDDYQDAEMGDYV-PGGAEAVRAYERGDYNKMAAIQQSLQAVVVRLNQA 343 (510) T ss_pred HHHHHHHHHhccCCcccCcccc-------cchhhhccCCCceee-cCCcccceeeecCcccchHHHHHHHHHHHHHHHHH Confidence 2333334444445544433211 112223333333232 21 22345555543 233 246777888777653 Q ss_pred hhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHcCCC-CCCceeEEEEecccCCccCC Q lcl|Aclame:pro 380 GAN-LLVKSGGNRTFGEAQQEEASEQSILSACTKNV-----SMAFRKALRWANQFQTGI-VNDETVEYNLNTDFPAARLT 452 (535) Q Consensus 380 ga~-~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~-----~~a~~~~lr~~a~~~g~~-~~~~~~~v~~n~df~~~~~d 452 (535) =.- +...++...||++...+..-....|.-.-.++ .-.+++++.++.+ .|.- ..++.+...+ ..|...--- T Consensus 344 f~~~l~~~~~~rvTAtEV~~r~~E~~~~LGpv~~rl~~E~l~Pli~r~~~il~r-~gl~p~p~~~~~~~~-v~~is~Lar 421 (510) T protein:vir:63 344 FMYGANQRDAERVTAEEVRITAEEAENTLGGTYSLLAENLQSPLAYVCLSEVDD-ALLQGLITKQHKPAI-ETGLPALSR 421 (510) T ss_pred HHhhcccCCCCCcCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCchhcccce-ecchhHHHH Confidence 221 22334556799998876655444455544443 3344555555544 2211 1222222211 122222111 Q ss_pred HHHHH---HHHHHHh--------cCCCCHHHHHHHH-HhCCCCCccC--CHHHHHHHHHhchh----h------cccCCC Q lcl|Aclame:pro 453 PNERA---ELILEWQ--------QGAITFKEMRAGL-RRAGVASEDD--AKAETEGKATVEFI----A------KTAAAG 508 (535) Q Consensus 453 ~~~~~---al~~l~~--------~G~is~et~~~~L-~r~gvl~~~~--~~eee~~~i~~e~~----~------~~~~~~ 508 (535) ++.+. ++....+ .-.|....+.+.+ ...||-+... +.||..+..+++.. . ....++ T Consensus 422 aq~~~~l~~~~q~l~~~~~~aq~~~~id~d~~~~~~a~~~Gv~p~~ivrs~eev~a~~~~~~qq~~~~~~~~~~~~~~a~ 501 (510) T protein:vir:63 422 SAAVQSMLNASQVIAGLAPIAQLDPRISLPKMMDTIWAAFSVDTSQFYKSADELQAEAEQQRQQAAQAQAAQETLLEGAS 501 (510) T ss_pred HHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHhCCChhHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22222 2221111 1223344444433 4466533322 34443332222100 0 011111 Q ss_pred cCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 509 KVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+.+- +|= T Consensus 502 ~~~~~~------------------~g~ 510 (510) T protein:vir:63 502 DMTNAL------------------AGV 510 (510) T ss_pred hhcccc------------------cCC Confidence 111111 111 No 149 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=95.46 E-value=0.002 Score=35.36 Aligned_cols=402 Identities=14% Similarity=0.054 Sum_probs=152.6 Q ss_pred ccccC--CCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSL--PNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M--~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) .|++. ..-....++-... +.-..--+ ..+...+..-| ......... ..+ ++.+..+..+..+-+. T Consensus 1 MG~f~~lf~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~g-----~~~~~~v~~-----~~a-l~~~~v~~ci~~ia~~ 67 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSN-YDEDIGID-ISDSNFWEKFG-----IKLNFSVRG-----KRA-LKENTVYVCTKIRAES 67 (422) T ss_pred CchhhhhhhccCCccchhhh-hhhccccc-cCcchhhhhcc-----ccCCcccch-----hhh-hccHHHHHHHHHHHHh Confidence 33332 1100001110000 00000000 00000000000 000000000 111 2222222333344444 Q ss_pred Hhhhhhc---cccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEE Q lcl|Aclame:pro 106 MMGQVFS---RDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTIT 182 (535) Q Consensus 106 l~G~lF~---k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~ 182 (535) ++++.|. +.-.. ....+..++..-=....+-.+|.+.+....+.+|.+++++.+...|.+ --+. T Consensus 68 iA~lp~~~~~~~~~~-~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~------------~~L~ 134 (422) T protein:vir:13 68 IGKLSLKIYKDKEEY-KEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKI------------IGLY 134 (422) T ss_pred hhhCceEEEecCccc-ccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcE------------EEEE Confidence 4444332 11111 122344554321123467789999999999999999999987665532 2566 Q ss_pred EechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeec Q lcl|Aclame:pro 183 LVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTD 262 (535) Q Consensus 183 ~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~ 262 (535) .++|..|. +..+++++.......+.++.. .+|. . . ..+. T Consensus 135 ~i~~~~v~---------------------~~~~~~~~~~~~~~~~y~~~~-~~g~-------------~-~----~~~~- 173 (422) T protein:vir:13 135 PINSDNVT---------------------KIIDDDNFLSSLSKVWYVVTD-KNGK-------------E-H----KLLP- 173 (422) T ss_pred EECCcceE---------------------EEEcCCcceeccceEEEEEEe-CCCe-------------E-E----EEcc- Confidence 66776651 112233322111111111111 0110 0 0 0000 Q ss_pred cCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCCccch--hccCc--c Q lcl|Aclame:pro 263 GNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTKDWVE--DVFKD--F 336 (535) Q Consensus 263 ~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~~~~~--d~~~~--~ 336 (535) ..| +.+ .....+...|.+|+.-+... +........+...+ ...+.|-.+++.-..-..+ +...+ . T Consensus 174 ------~ei--ih~~~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~ 244 (422) T protein:vir:13 174 ------DEM--LHFIGDITLDGLIGIKPLDYLRCT-IENGRATQEFINKFFKNGLSIKGIVQYVGDLDEKAKKIFKKEFE 244 (422) T ss_pred ------cce--EEEcCCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHH Confidence 111 111 22233445678888766543 44444444444443 3446788777642211111 00000 0 Q ss_pred eeeec---CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccc-ccccchHHHHHHHHHHHHHHH Q lcl|Aclame:pro 337 KVHLG---SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKS-GGNRTFGEAQQEEASEQSILS 408 (535) Q Consensus 337 ~i~iG---~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~-~~~~ta~~a~~~~~~~~S~L~ 408 (535) ...-| ...++.++.+.++..+..++..... +..+-...+++. +...++... .++.+..+ .....--+..|. T Consensus 245 ~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e-~~~~~f~~~~l~ 323 (422) T protein:vir:13 245 SMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLT-EQQKDFYVTTLQ 323 (422) T ss_pred HHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHH-HHHHHHHHHHHH Confidence 01112 2345667877777766666654432 222222333332 334444321 11111111 111122244566 Q ss_pred HHHHHHHHHHHHHH-HHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccC Q lcl|Aclame:pro 409 ACTKNVSMAFRKAL-RWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDD 487 (535) Q Consensus 409 ~~a~~~~~a~~~~l-r~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~ 487 (535) -++.+++++++.-| .-.... ....|+++.+-.........+.++.+++++|.++.-.+++.+ |+ ++.. T Consensus 324 P~~~~ie~~l~~~Ll~~~~~~-------~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~---gl-~p~~ 392 (422) T protein:vir:13 324 SSLTVYEQEIQDKLFSQYETL-------QDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRE---NL-PPVE 392 (422) T ss_pred HHHHHHHHHHHHhhCChhhhc-------CCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCC Confidence 67777777766432 211111 113344443322222223456677789999999988877644 32 2211 Q ss_pred CHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCC Q lcl|Aclame:pro 488 AKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGG 530 (535) Q Consensus 488 ~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (535) .-+ ++- ...+..+-+..+. ..+...+.||. T Consensus 393 ggD----~~~------~~~n~~~l~~~~~---~~~~~g~~~g~ 422 (422) T protein:vir:13 393 GGD----RLL------VNGNMIPIEMAGE---QYKKGGEKGGK 422 (422) T ss_pred CcC----eee------eccCccchhhccc---ccccCCCcCCC Confidence 101 110 0011111111100 00000111111 No 150 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=95.37 E-value=0.0022 Score=35.15 Aligned_cols=376 Identities=13% Similarity=0.105 Sum_probs=156.0 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |.--+.. --.+++|+.+.-+++... .+.+. ..| .+ ..|+ . T Consensus 1 M~~f~~~---------~~~~~~~~~~~~~~~~~~----~~~~~---~~~-------~~--------~~~v--------~- 40 (386) T protein:vir:48 1 MPIFNIT---------NLATESPPISQGGFFDIT----DPDFL---STL-------NG--------SEWV--------S- 40 (386) T ss_pred Ccccccc---------cccccccccccccccccc----cchhc---ccc-------cC--------Ccee--------c- Confidence 3221110 001334444433332221 11110 000 01 1111 0 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEee Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDY 160 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~ 160 (535) ....++.+..+..+..+.+.++++.|. +- ......+.+..+ ...+-.+|.+.+....+.+|.+++++.. T Consensus 41 -----~~~~~~~~~v~~~i~~ia~~ia~~p~~----~~-~~~~~~l~~~pN-~~~t~~~f~~~~~~~lll~Gna~~~i~r 109 (386) T protein:vir:48 41 -----AESALRNSDLFSIINQLSNDLATVKLT----AS-RKQLQGIIDNPS-NNANRFNFYQSIFAQMLLGGEAFAYRWR 109 (386) T ss_pred -----hhhhhcchHHHHHHHHHHHhhccCcee----ec-cchhHHHhhcCC-CCCCHHHHHHHHHHHhhhcCcEEEEEEE Confidence 111233333334444444444444332 11 122334555444 3578889999999999999999999987 Q ss_pred cCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEE Q lcl|Aclame:pro 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQV 240 (535) Q Consensus 161 p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v 240 (535) ...|.+ --+..++|..| .+. ...++ ....|++.. T Consensus 110 ~~~g~~------------~~L~~l~~~~v-----------------~v~----~~~~~----~~~~y~~~~--------- 143 (386) T protein:vir:48 110 NENGRD------------MKWEYLRPSQV-----------------SFN----RLDNK----DGIYYNITF--------- 143 (386) T ss_pred CCCCcE------------EEEEEecCcee-----------------EEE----EcCCC----ceEEEEEEe--------- Confidence 654431 14445555544 110 01111 001111100 Q ss_pred EEEeeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH-HHHHHhcCce Q lcl|Aclame:pro 241 ERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYE-EMAFVAGQPT 318 (535) Q Consensus 241 ~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~-~~l~~~~~P~ 318 (535) ..... ......+. .. ++++ +...++...|.+|+.-++. .+.......++. ......+.|. T Consensus 144 -----~~~~~---~~~~~~~~-------~e--vih~~~~~~~~~~~G~s~i~~~~~-~i~~~~~~~~~~~~~~~ng~~~~ 205 (386) T protein:vir:48 144 -----DDPRI---PPKQHVPQ-------GD--VLHFKLLSVDGGLTSVSPLMALSR-ELNIQKASDKLTLNSLKNALNAN 205 (386) T ss_pred -----cCccc---cceeEecC-------cc--EEEecCCCCCCceeeccHHHHHHH-HHHHHHHHHHHHHHHHhccCCcc Confidence 00000 00000000 01 1222 2223344567888876543 333333333333 3345567788 Q ss_pred eEeeCCCCccchhcc---C-cceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH---hhhhhcccccc Q lcl|Aclame:pro 319 AFFTGLTKDWVEDVF---K-DFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM---GANLLVKSGGN 390 (535) Q Consensus 319 ~~~~G~~~~~~~d~~---~-~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l---ga~~l~~~~~~ 390 (535) .+++--.....+... + -....-.+..++.++.+.++.-+..++.... .+..+....+++++ ...++...+.. T Consensus 206 ~ii~~~~~~~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~ 285 (386) T protein:vir:48 206 GILKIKGGGLLDFKTKLSRSRQAMKQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGGQGDQ 285 (386) T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhhcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc Confidence 777742221111100 0 0011123334566777766665555554443 23333444444432 23334322212 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCH Q lcl|Aclame:pro 391 RTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITF 470 (535) Q Consensus 391 ~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~ 470 (535) .+..+...+ --...|.-+...+++++++.|-- ...+.+...+. .........+-+++.+|.++. T Consensus 286 ~~~e~~~~~--~~~~~l~P~~~~ie~~l~~~l~~------------~~~~~~~~~~~--~d~~~~~~~~~~l~~~g~~t~ 349 (386) T protein:vir:48 286 QSSLEMSLD--LYNKAVSRYLRPFLSELSQKLSC------------DVDADILPAVD--PTGSNSVSRINSMVKSGTLAQ 349 (386) T ss_pred ccHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcc------------hhhcchhhhhc--cChHHHHHHHHHHHhCCCcCH Confidence 222222222 23445666777777777655411 01111111111 111233455668889999999 Q ss_pred HHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 471 KEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 471 et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) -+.++.+-+.++.+.+ ..+ . +..+.++ ..+|.+|+++ T Consensus 350 nE~r~~lg~~~~~~~~-~~~-----~--~~~~~~~-------~~gGd~~~~~ 386 (386) T protein:vir:48 350 NQGLYILQQAEILPKE-LPE-----G--ENPNKTT-------LKGGEINGED 386 (386) T ss_pred HHHHHHhhcCCCCCcc-chh-----h--cCCCCCc-------cCCCCCCCCC Confidence 9999888777765432 111 0 1111111 1122222222 No 151 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=95.33 E-value=0.0023 Score=35.08 Aligned_cols=403 Identities=12% Similarity=-0.019 Sum_probs=161.1 Q ss_pred CCcchhhhhhhhhcceecCCCCCCC--------CcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPT--------SGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPM 72 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~ 72 (535) ||+|..-=++-+...-.+-+++.|+ ++.+.++....+..|.. .+ T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iL--------------r~-------------- 52 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELL--------------QG-------------- 52 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhh--------------cc-------------- Confidence 8876543111111100011111111 11111111111111111 00 Q ss_pred CCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccc---cCHH-------HHHHHhccCC--CCCCHHHH Q lcl|Aclame:pro 73 PSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQ---LPPA-------LEAIVEDIDG--EGVSLDQQ 140 (535) Q Consensus 73 ~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~---~p~~-------l~~l~~d~d~--~G~~L~~~ 140 (535) ...-+.|+.... =.++...++.....|.+.++.++ .++. +...++.-|. .-.+++.+ T Consensus 53 -------~~~~~ly~~m~~----D~hi~s~l~~Rk~av~~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~ 121 (448) T protein:vir:79 53 -------KDGLLVYHKMLS----DGTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRL 121 (448) T ss_pred -------ccchHHHHHHhh----ChHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHH Confidence 011234666543 25566666666666666777664 1111 1122221111 12356676 Q ss_pred HHHHHHHHHhhCcEEEE-EeecCCCcccchHHHHhccCC-cEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCC Q lcl|Aclame:pro 141 AKKALGYTMGFGRAAIF-TDYPNVGRPVTVLEQKLGLYR-PTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDG 218 (535) Q Consensus 141 ~~~~~~~~l~~G~~~vl-VD~p~~~~~~t~ad~~~~~~r-Py~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~ 218 (535) +..++. ++.+|.+.+= |+....++ . .. .-+..++++.+--|.++..++ | T Consensus 122 ~~~~ld-a~~~G~s~~Eivw~~~~~g-~---------~~~~~l~~r~~~~~~~f~~~~d~~---l--------------- 172 (448) T protein:vir:79 122 FAIYEN-AYIYGMAAGEIVLTLGADG-K---------LILDKIVPIHPFNIDEVLYDEEGG---P--------------- 172 (448) T ss_pred HHHHHH-hhhhcceeEEEEeeecCCC-c---------eecccccccCCccccceeeecCCc---e--------------- Confidence 666554 6677776653 33222111 0 00 112222233222223322221 0 Q ss_pred cccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeE---EEEeccCCCcCCCCcchHHHHHH Q lcl|Aclame:pro 219 FETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIP---FQFIGPLDNNADIDHPPLLDLCE 295 (535) Q Consensus 219 f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP---~v~~~~~~~~~~~~~ppL~dLA~ 295 (535) ++++. ....... .....+. .|| |+.+.....+...+.+.|.-++. T Consensus 173 ---------~~~~~-------------~~~~~~~-------~~~~~~~---~lP~~~~i~~~~~~~g~p~g~gLlr~~~w 220 (448) T protein:vir:79 173 ---------KALKL-------------SGEVKGG-------SQFVSGL---EIPIWKTVVFLHNDDGSFTGQSALRAAVP 220 (448) T ss_pred ---------EEeec-------------CCccccc-------ccCCCcc---ccccceEEEEecCccCCcccchhHHHHHH Confidence 00000 0000000 0000111 233 23222223334455555556555 Q ss_pred HHHHHHhhHHHHHHHHHHhcCceeEeeCCCCcc--chh--ccC--cceeeecCcccccCCCCCccceeecCcchhH-HHH Q lcl|Aclame:pro 296 VNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDW--VED--VFK--DFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEA 368 (535) Q Consensus 296 ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~--~~d--~~~--~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~ 368 (535) .-+---....+...-++.-+.|+++........ ..+ .+. -..|..|..++..+|.+.+..|++..+.+.. .+. T Consensus 221 ~~~fK~~~~~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~~~~ie~~ea~~~~~~~~~~ 300 (448) T protein:vir:79 221 HWLAKRALILLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPY 300 (448) T ss_pred HHHHHHHHHHHHHHHHHHcCCceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCcccHHHH Confidence 444434556677777888899999988533221 111 111 1224568888888999999999998876544 355 Q ss_pred HHHHHHHHHH-HhhhhhcccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCceeEEEEecc Q lcl|Aclame:pro 369 MTHKESQMIA-MGANLLVKSGGNRTFGEAQ-QEEASEQSILSACTKNVSMAFRK-ALRWANQFQTGIVNDETVEYNLNTD 445 (535) Q Consensus 369 l~~~e~qm~~-lga~~l~~~~~~~ta~~a~-~~~~~~~S~L~~~a~~~~~a~~~-~lr~~a~~~g~~~~~~~~~v~~n~d 445 (535) ++...++|.. +.++++..+.+..++..+. .........+.+-+..+++++++ ++++++.|--.. +..-..|++ + T Consensus 301 i~~~d~~Isk~iLGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~-~~~~P~~~f--~ 377 (448) T protein:vir:79 301 LTYHDAGIARALGIDFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPS-ATRFPRLTF--E 377 (448) T ss_pred HHHHHHHHHHHHhhhhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cCCCcEEEe--c Confidence 5655566533 3344443333222222222 11222334566788888898975 888888875211 111123332 2 Q ss_pred cCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccccccccc Q lcl|Aclame:pro 446 FPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNN 525 (535) Q Consensus 446 f~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (535) .. +++++.++....+. |. +-+...++.. .+....|.+.+.....+ ....... T Consensus 378 ~~----e~~Dl~~~a~~~~~-----------l~-----~~~~~~~~~~----~~~~~~p~~~~~~~~~a----~~~~~~~ 429 (448) T protein:vir:79 378 ME----ERNDFSAAANLMGM-----------LI-----NAVKDSEDIP----TELKALIDALPSKMRRA----LGVVDEV 429 (448) T ss_pred CC----ChHHHHHHHHHhhh-----------hh-----ccchhhHHHH----HHhhcCCCCCCCccccc----cCCCCcc Confidence 11 33444443322211 00 0001111111 11112222211111100 0011111 Q ss_pred ccCCCCCCCC Q lcl|Aclame:pro 526 GNGGGNQAGN 535 (535) Q Consensus 526 ~~~~~~~~~~ 535 (535) + .+.++.+| T Consensus 430 ~-~~~~~~~~ 438 (448) T protein:vir:79 430 R-EAVRQPAD 438 (448) T ss_pred c-ccccCCcc Confidence 1 12333333 No 152 >protein:vir:345 Length: 663 # NCBI annotation: virion structural protein # Family: family:all:3199 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203459;genbank:gi:15320615;genbank:GeneID:921720 Probab=94.77 E-value=0.0035 Score=34.02 Aligned_cols=437 Identities=11% Similarity=0.075 Sum_probs=179.8 Q ss_pred CCCC----CccCHHHHHHHHHHH-HHHHHhcChHHHHHHH----hhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHH Q lcl|Aclame:pro 32 LPNV----GYQRVEFGEMLPKWR-KIMDCLSGQEAIKAKR----EEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTART 102 (535) Q Consensus 32 M~~v----~~~hp~y~~~~~~w~-~i~d~~~G~~~~~~~g----~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~t 102 (535) |.+- =+-||+- ...+|. .|...-.+-..|+.++ +.|+= +.... . .+-.-+|.+-.+ T Consensus 1 m~~~~~~~~~~tpe~--la~~W~~~I~~a~~~~~~~h~r~~~~~k~y~~----~~~~~------~---~~~~r~nl~~sn 65 (663) T protein:vir:34 1 MNESQPTDFADTPQG--WAQRWQEEMSAAREPLEKWHTQGKEIVKRYRD----ERDSA------H---DAETRWNLFSTN 65 (663) T ss_pred CCccccccchhcchh--HHHHHHHHHHHHHhccchHHHHHHHHHHHhhc----cccCC------C---ccccccchhhhh Confidence 5531 1235654 455664 3555555555554433 33431 10000 0 001236999999 Q ss_pred HHHHhhhhhccccccccCH-----------HHHHHHh-----ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCC-- Q lcl|Aclame:pro 103 LDGMMGQVFSRDPIRQLPP-----------ALEAIVE-----DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVG-- 164 (535) Q Consensus 103 v~~l~G~lF~k~p~~~~p~-----------~l~~l~~-----d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~-- 164 (535) +..+.=-|++++|..++.. ....+++ .+..+-..|+.-|+.+.+.+|.+|+.-+-|=|-..- T Consensus 66 i~~i~P~iYar~P~p~V~~rf~d~d~~~~r~ase~leR~~~~~~~~D~~~l~~~~~~~v~d~ll~~rG~~~v~Ye~~~~~ 145 (663) T protein:vir:34 66 IQTQMASLYGQTPKVSVSRRFADADDDVARVASELLERLLNTDIEKDSDTFQQALEYALQDRLLPGFGLCRIRYEVEWEE 145 (663) T ss_pred HHHHhhhhhcCCCcceeeecccCcccchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccceEEEEeecccch Confidence 9999999999998874321 1222222 244444569999999999999999998888872210 Q ss_pred --c---cc-chHHHH-hccCCc---------EEEEechhhh-----hcceeeecCCccceeEEEEEEEEee--cCCCccc Q lcl|Aclame:pro 165 --R---PV-TVLEQK-LGLYRP---------TITLVHPTSI-----INWRTKLVGGKSVISLVVIQENVLA--QDDGFET 221 (535) Q Consensus 165 --~---~~-t~ad~~-~~~~rP---------y~~~~~~~~I-----i~w~~~~~~g~~~Lt~v~l~E~~~~--~~d~f~~ 221 (535) . .. ...++. +.+--| -+-.+.-+++ --|+ ...||..+=.... -.+.|+. T Consensus 146 ~~~~~~~~D~~~~~~~a~~~~~~e~~a~E~v~id~v~~~dfl~~pAr~W~--------ev~wva~r~~mtk~e~~~rf~~ 217 (663) T protein:vir:34 146 VAGVDAILDEATGAELAAAVPPTQRKAYECVETDYLHWQDVLWSPARVWH--------EVRWLAFRNLLDMREFNARFDA 217 (663) T ss_pred hccccccCCCccccchhcccccchhhcccceeeeeechhhcccchhhccc--------cccceeeeccCCHHHHHHhhcC Confidence 0 00 000110 001001 0111111111 1232 1122222110000 0011211 Q ss_pred ce-------------------------eeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCcc-----cee Q lcl|Aclame:pro 222 TY-------------------------VQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPF-----KEI 271 (535) Q Consensus 222 ~~-------------------------~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l-----~~I 271 (535) +. ..+..|| ++|.+....-.+...+-....+....+| -=+ T Consensus 218 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~Vw----------EIWdK~~~~V~w~~eg~~~~L~~~~p~lgl~~ffPc 287 (663) T protein:vir:34 218 DGSRNLWASVPKVGKPKDGKDGQSCHPWDRAEVW----------EIWDKGGRKVDWYVEGYSAVLDTQPDPLGLESFFPC 287 (663) T ss_pred ChhhhhhhhccCcCCccccCCCCCcchhcCccee----------EEEecCCcEEEEEEcCcceecccCCCCCCCCCCCCC Confidence 00 0123333 4444332221111111112222233333 335 Q ss_pred EEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCc-cc---hhccCcceeeecCccccc Q lcl|Aclame:pro 272 PFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKD-WV---EDVFKDFKVHLGSRAIIP 347 (535) Q Consensus 272 P~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~-~~---~d~~~~~~i~iG~~~~~~ 347 (535) |+..+....++..+..|++.=-..+..+|+. .++.-+.+.-.-.|.-+++.-..+ -. .+...+.-++|-+-..+ T Consensus 288 Prpl~~~~~~ds~ipvpd~~~y~~~~~E~n~-~t~Rin~l~d~ikv~gvy~~~~g~~i~~~l~~a~~n~lvpV~~~~~~- 365 (663) T protein:vir:34 288 PKPLLANWTTDKVVPRPDFVLAQDLYKEIDL-VSTRITLLERAIRVVGVYDKSSGLTIGRLLSEAAQNDLIPVENWLTF- 365 (663) T ss_pred cccccceecCCCeecCCcHHHHHHHHHHHHH-HHHHHHHHHhhhhhceeeccccchhHHHHHHHhhCCCceecchhhhh- Confidence 7776777777788888888744566666654 444555555555666665421111 11 11111222223111111 Q ss_pred CCCCCc---cceeecCcch--hH-----HHHHHHHHHHHHHHhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 348 LPQGAT---AGILQITPNS--VP-----FEAMTHKESQMIAMGANLL-VKSGGNRTFGEAQQEEASEQSILSACTKNVSM 416 (535) Q Consensus 348 lp~~~~---~~~~e~~~~~--l~-----~~~l~~~e~qm~~lga~~l-~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~ 416 (535) ...++- ..|+-+++.- |. +..+..-+.|+--+. ... .....++|+++..+..+..--.|+-+...+++ T Consensus 366 ~~~gg~~k~I~~~pi~~~~~aI~~l~~~r~qir~d~~qITGia-Di~Rga~~a~ETatAQ~IKsq~gS~RIqe~qdevqR 444 (663) T protein:vir:34 366 ADKGGLRGVVDWFPLEPVVAALTSLRDYRRELVDALHQVTGMA-DIMRGASDPRETAMAQGVKAKFGSIRLQRLQDEVAR 444 (663) T ss_pred hhhcCccchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHhHH-HHhhcccCcchhhHHHHHHHHHHhHHHHHHHHHHHH Confidence 111221 2233344422 11 112222233332222 222 23346789999988887777779999999999 Q ss_pred HHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCC------------CC Q lcl|Aclame:pro 417 AFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGV------------AS 484 (535) Q Consensus 417 a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gv------------l~ 484 (535) ....+.++.|+.+-..... +.+..++.+-.-....-+-.+.+|++..+ +- T Consensus 445 ~arDi~ql~AEIl~~~~~~------------------etl~~m~~~elp~~~ei~~~~~~L~n~~~r~~~ldIe~dsT~~ 506 (663) T protein:vir:34 445 FASDIQRLKAEVIAEHYDV------------------ASILAQANAEFTFDKELAPKAAELIKSRFSMYRVEVKPEAVSL 506 (663) T ss_pred HHHHHHHHHHHHHHHhcCH------------------HHHHHHhcCCCCcccchhHHHHHHhcCCCcceeeeeccCCCCc Confidence 9999999998877533322 22222111000000111112222222211 00 Q ss_pred ccCCHHHHHH-HHHhchhhcccCCCcCCCCCCCccccccc-ccccCCCCCCCC Q lcl|Aclame:pro 485 EDDAKAETEG-KATVEFIAKTAAAGKVGDAASGGTNKAKL-NNGNGGGNQAGN 535 (535) Q Consensus 485 ~~~~~eee~~-~i~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 535 (535) +| ..+++. ..+.. +..++.... ..+. .-+-+-.|...+ T Consensus 507 ~D--~~~eK~~~~E~l----~~i~~~~qq-------~~pl~~q~p~~~p~l~E 546 (663) T protein:vir:34 507 QD--FAALRNEKMEVL----SGIASFMQG-------VAPLAQQVPGSAPFLLQ 546 (663) T ss_pred CC--hHHHHHHHHHHH----HHHHHHHHH-------HHHHHHhhhhhHHHHHH Confidence 00 011111 11000 000000000 0000 000001111111 No 153 >protein:vir:9263 Length: 725 # NCBI annotation: 1 # Family: family:all:487 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720327;genbank:gi:24371585;genbank:GeneID:955785 Probab=94.61 E-value=0.0039 Score=33.77 Aligned_cols=474 Identities=9% Similarity=0.002 Sum_probs=169.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMG 108 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G 108 (535) |+|-...|-+ .+..|. .++.....+|+.. ..|. .+..-+.+ ...+..-..|-+ +|.++++|+.++| T Consensus 1 m~d~~~~~~~---~~~~~~---~~~~~~~~~r~~a~~d~~fy---~G~Qw~~~-~~~~l~~q~rp~-~N~i~~~i~~v~g 69 (725) T protein:vir:92 1 MADNENRLES---ILSRFD---ADWTASDEARREAKNDLFFS---RISQWDDW-LSQYTTLQYRGQ-FDVVRPVVRKLVS 69 (725) T ss_pred CCchHHHHHH---HHHHHH---HHHHhhHHHHHHHHHHHHhh---cCCCCCHH-HHHHHHhcCCCc-ccchHHHHHHHHh Confidence 9975444433 332222 3333444444322 2233 22222333 333333344555 5999999999999 Q ss_pred hhhcccccccc-C---------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccchHHHHhcc Q lcl|Aclame:pro 109 QVFSRDPIRQL-P---------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTVLEQKLGL 176 (535) Q Consensus 109 ~lF~k~p~~~~-p---------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ad~~~~~ 176 (535) .-=++.+.+.+ | +.+..+++.+- +-++.+.-...+|..++.+|.+|+=| ||...+..- .. T Consensus 70 ~e~~nr~d~~v~P~~~~d~~~Ae~l~~~~~~~~-~~~~~~~a~s~Af~~~i~~G~G~~ev~~d~~~~d~~~-------~~ 141 (725) T protein:vir:92 70 EMRQNPIDVLYRPKDGASPDAADVLMGMYRTDM-RHNTAKIAVNVAVREQIESGVGAWRLVTDYEDQSPTS-------NN 141 (725) T ss_pred hHHhCCcceEEecCCccHHHHHHHHHHHHHHHH-HhhCchHHHHHHHHHHhhcCcceeeeeecccCCCCCC-------Cc Confidence 87555555432 2 22333333321 22466777889999999999999654 553211100 00 Q ss_pred CCcEEE-Eec-hhhh-hcceeeecCC---ccc--eeEEEE-----------------EEEEeecCCCcccceeeEEEEEe Q lcl|Aclame:pro 177 YRPTIT-LVH-PTSI-INWRTKLVGG---KSV--ISLVVI-----------------QENVLAQDDGFETTYVQQWRVLQ 231 (535) Q Consensus 177 ~rPy~~-~~~-~~~I-i~w~~~~~~g---~~~--Lt~v~l-----------------~E~~~~~~d~f~~~~~~~~rvl~ 231 (535) .+.-+. +++ ..+| ++|.....+. +.. .-|+-. .+.....+..+++.....+||.+ T Consensus 142 ~~i~~~~i~~~~~~V~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vrv~e 221 (725) T protein:vir:92 142 QVIRREPIHSACSHVIWDSNSKLMDKSDSRHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAE 221 (725) T ss_pred eeeEEeeccCChhhcccCchhhccChhhHHHHHHHhcCCHHHHHHHHhhcCcchhhhhhcccCCcccccccCCCeEEEEE Confidence 000000 111 2222 3333222111 000 000100 00000000011111222333332 Q ss_pred ecCCceEEEE--EEeeec--cCCc----------------------------------cc-cccceeeeccCCCccceeE Q lcl|Aclame:pro 232 LNAEGNYQVE--RWRRET--QEEM----------------------------------YY-SYSKHVPTDGNGNPFKEIP 272 (535) Q Consensus 232 l~~~g~y~v~--~w~~~~--~~~~----------------------------------~~-~~~~~~~~~~~~~~l~~IP 272 (535) . |....+. ++.... .+.. ++ ..+..++.+....+-++|| T Consensus 222 ~--~~r~~~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~~~kv~~~~~~g~~~l~~~~~~~~~~~P 299 (725) T protein:vir:92 222 F--YEVVEKKETAFIYQDPVTGEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIP 299 (725) T ss_pred E--EEEEEEeeeEEeecCCCCCceeecChhhHHHHHHHHhccCchhhhhccceeeeEeeeeecchhhhcCCCCCCCCcee Confidence 1 1000000 000000 0000 00 0011111111223446688 Q ss_pred EEEeccCC---CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccC Q lcl|Aclame:pro 273 FQFIGPLD---NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPL 348 (535) Q Consensus 273 ~v~~~~~~---~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~l 348 (535) ||+|.... .+-.....-+.++.+.+.-++...|-+.+++..+..-..... +-.+........++.......+.... T Consensus 300 ~vP~~g~r~~~~g~~~~~G~vr~~kd~Q~~~N~~~S~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 379 (725) T protein:vir:92 300 IVPVFGEWGFVEDKEVYEGVVRLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDE 379 (725) T ss_pred eEEEEeeeeccCCcccccceeccchhHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHhccCccceeecccccc Confidence 88653222 111222244678888899999888888888765444222221 11110000001111111111111111 Q ss_pred CCCC----ccceeecCcchhH---HHHHHHHHHHHHHH-h--hhhhcccccccchHHHH-HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 349 PQGA----TAGILQITPNSVP---FEAMTHKESQMIAM-G--ANLLVKSGGNRTFGEAQ-QEEASEQSILSACTKNVSMA 417 (535) Q Consensus 349 p~~~----~~~~~e~~~~~l~---~~~l~~~e~qm~~l-g--a~~l~~~~~~~ta~~a~-~~~~~~~S~L~~~a~~~~~a 417 (535) ..++ .+.+.+ ...+. .+.|+...+.|..+ | ..++...+ +.+++.+- ....+..-.|..+-.|+..+ T Consensus 380 ~~g~~~~~~i~~~~--~~~~p~~~~~ll~~~~~~i~~~tGi~~~~lG~~~-n~~SG~ai~~rq~qg~~~l~~~~Dnl~~~ 456 (725) T protein:vir:92 380 NNGEMPTQPLAYYE--NPEVPQANAYMLEAATAAVKEVATLGVDAEAVNG-GQVAYDTVNQLNMRADLETYVFQDNLATA 456 (725) T ss_pred ccccccccCCcccC--CCCchHHHHHHHHHHHHHHHHHhCCCHHHhccCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 1111 222222 22332 24455444444333 2 22343333 44554433 33333333455555555554 Q ss_pred H----HHHHHHHHHHcCCCC-------CCceeEEEEecc------------------cCC--------ccCCHHHHHHHH Q lcl|Aclame:pro 418 F----RKALRWANQFQTGIV-------NDETVEYNLNTD------------------FPA--------ARLTPNERAELI 460 (535) Q Consensus 418 ~----~~~lr~~a~~~g~~~-------~~~~~~v~~n~d------------------f~~--------~~~d~~~~~al~ 460 (535) . +.+|.++..++...- ++..-.+.+|.. |.. .....+.+.+|+ T Consensus 457 ~~~~g~~lL~lI~~~~~~~r~~RI~~edg~~~~v~in~~~~~~~~G~~~~~Ndi~g~~Dv~v~~~p~~~s~r~~~~~~l~ 536 (725) T protein:vir:92 457 MRRDGEIYQSIVNDIYDVPRNVTITLEDGSEKEVQLMAEVVDLATGERQVLNDIRGRYECYTDVGPSFQSMKQQNRAEIL 536 (725) T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCCCcceEEeccccccccccchhhhhccccceeeEEeeccChHHHHHHHHHHHH Confidence 4 456777788874310 111111223321 111 111223445555 Q ss_pred HHHhcCCCCHHHHHH-HHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 461 LEWQQGAITFKEMRA-GLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 461 ~l~~~G~is~et~~~-~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) .+.+.---....... .++-... .+..-.+|+..++..+...... ..+.++.. ..+...-...-...+.+ T Consensus 537 ql~~~~~~~~~~~~~~l~~~~~~-~d~~~~~e~~erirkq~~~~~~--~~~~~~e~---~q~~~~~qqa~~~q~~~ 606 (725) T protein:vir:92 537 ELLGKTPQGTPEYQLLLLQYFTL-LDGKGVEMMRDYANKQLIQMGV--KKPETPEE---QQWLVEAQQAKQGQQDP 606 (725) T ss_pred HHHHhcccchhHHHHHHHHHhhc-ccchHHHHHHHHHHhhhchhcc--CCccchhh---hHHHHHHHHHHHhhhHH Confidence 555431100011000 0111110 1111234455555443221110 11111000 00000000000001111 No 154 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=94.47 E-value=0.0043 Score=33.55 Aligned_cols=379 Identities=10% Similarity=0.014 Sum_probs=151.4 Q ss_pred ccccCCC-CCcc-CHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPN-VGYQ-RVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~-v~~~-hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) +=..+.+ +.+. .+.-.+....|.. .|.... .++...... ...|.. ..|.-.+.....|+. T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~-----~~~~~~------~~~~~~~~~-----~~~v~~--~~al~~~~v~~~i~~ 62 (392) T protein:vir:10 1 MILPILNFINQTNDPPEVGSVQSYFP-----DGNDAQ------IMESLLGDN-----NEWVSA--RAALRNSDLFSIILQ 62 (392) T ss_pred Ccchhhhhhhcccccccccccccccc-----cCchhh------hhhhhcCCC-----Cceech--HHhhccHHHHHHHHH Confidence 0000001 0000 0000000000000 000000 000000000 000100 111112344455555 Q ss_pred HhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEec Q lcl|Aclame:pro 106 MMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVH 185 (535) Q Consensus 106 l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~ 185 (535) +++.+-+-+..+. -.....|.+.-+ ...+-.+|.+.+....+.+|.+++++.....|... -+..++ T Consensus 63 ia~~ia~lp~~~~-~~~~~~l~~~PN-~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~------------~L~~l~ 128 (392) T protein:vir:10 63 LSSDLAIVKINAE-KKKNQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM------------KWEYLR 128 (392) T ss_pred HHHhhccCceeec-cchhhhHhhcCC-CCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEE------------EEEEEc Confidence 5555433333221 111233444443 35788999999999999999999999876554321 344455 Q ss_pred hhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCC Q lcl|Aclame:pro 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG 265 (535) Q Consensus 186 ~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~ 265 (535) |..|- ++ .+.++ ... .|++. . ....... ....+ T Consensus 129 ~~~v~---------------~~-----~~~~~---~~~--~y~~~-----------~---~~~~~~~---~~~~~----- 161 (392) T protein:vir:10 129 PSQVN---------------TY-----YFEYE---NGM--YYNIT-----------F---DDPKIEP---ILQAP----- 161 (392) T ss_pred CceeE---------------EE-----EcCCC---ceE--EEEEE-----------e---cCcccce---eEEEc----- Confidence 54440 10 11111 011 11111 0 0000000 00000 Q ss_pred CccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCC--ccchhccC-ccee-- Q lcl|Aclame:pro 266 NPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTK--DWVEDVFK-DFKV-- 338 (535) Q Consensus 266 ~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~--~~~~d~~~-~~~i-- 338 (535) -.. ++++ +....+...|.+|+..+... +........+... ....++|-.+++=-.. ........ ...+ T Consensus 162 --~~e--iih~~~~~~~~~~~G~s~i~~~~~~-i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~ 236 (392) T protein:vir:10 162 --QSD--LIHMKLLSIDGGKTGISPLYSLRRE-SKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMK 236 (392) T ss_pred --ccc--EEEecCCCCCCccccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhc Confidence 011 1222 22233445688888765443 3333333333333 3455677766652111 11110000 0011 Q ss_pred eecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH---hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 339 HLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM---GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNV 414 (535) Q Consensus 339 ~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l---ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~ 414 (535) ...+..++.+|.+.++.-+..++.... .+..+...++++++ ...++.... ..++.... ..+--...|.-++..+ T Consensus 237 ~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~-~~~~~~~~-~~~f~~~~l~P~~~~i 314 (392) T protein:vir:10 237 RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG-DQQSSIQQ-ISGMYASALNRYLRPA 314 (392) T ss_pred cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CcccHHHH-HHHHHHHHHHHHHHHH Confidence 112334566777766666655554433 23344444555443 333443222 22222111 1122244566677777 Q ss_pred HHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHH Q lcl|Aclame:pro 415 SMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEG 494 (535) Q Consensus 415 ~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~ 494 (535) +++++..|- . .+++.+..-|.. ........+.+++.+|.+++..+++.+.+.|+.+.+.. + T Consensus 315 e~~l~~~L~-------~-----~~~~d~~~~~~~--d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~r-~---- 375 (392) T protein:vir:10 315 ISELEYKLS-------D-----HISVNMRPAIDP--LGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP-A---- 375 (392) T ss_pred HHHHHHhcc-------c-----cccccchhhhcc--CHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccccc-h---- Confidence 777665441 1 122222222221 11334566778999999999999999999998743221 1 Q ss_pred HHHhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 495 KATVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 495 ~i~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) ..+.++. +++.+++-.+ T Consensus 376 -----~e~l~~~------~~Gd~~~p~p 392 (392) T protein:vir:10 376 -----PENTNKK------TTGQSNEPVP 392 (392) T ss_pred -----hcCCCCC------CCCCCCCCCC Confidence 0112211 1111222222 No 155 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=94.47 E-value=0.0043 Score=33.55 Aligned_cols=379 Identities=10% Similarity=0.014 Sum_probs=151.4 Q ss_pred ccccCCC-CCcc-CHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPN-VGYQ-RVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~-v~~~-hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) +=..+.+ +.+. .+.-.+....|.. .|.... .++...... ...|.. ..|.-.+.....|+. T Consensus 1 m~m~~f~~~~~~~~~~~~~~~~~~~~-----~~~~~~------~~~~~~~~~-----~~~v~~--~~al~~~~v~~~i~~ 62 (392) T protein:vir:39 1 MILPILNFINQTNDPPEVGSVQSYFP-----DGNDAQ------IMESLLGDN-----NEWVSA--RAALRNSDLFSIILQ 62 (392) T ss_pred Ccchhhhhhhcccccccccccccccc-----cCchhh------hhhhhcCCC-----Cceech--HHhhccHHHHHHHHH Confidence 0000001 0000 0000000000000 000000 000000000 000100 111112344455555 Q ss_pred HhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEec Q lcl|Aclame:pro 106 MMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVH 185 (535) Q Consensus 106 l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~ 185 (535) +++.+-+-+..+. -.....|.+.-+ ...+-.+|.+.+....+.+|.+++++.....|... -+..++ T Consensus 63 ia~~ia~lp~~~~-~~~~~~l~~~PN-~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~------------~L~~l~ 128 (392) T protein:vir:39 63 LSSDLAIVKINAE-KKKNQGIIDNPS-TNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADM------------KWEYLR 128 (392) T ss_pred HHHhhccCceeec-cchhhhHhhcCC-CCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEE------------EEEEEc Confidence 5555433333221 111233444443 35788999999999999999999999876554321 344455 Q ss_pred hhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCC Q lcl|Aclame:pro 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG 265 (535) Q Consensus 186 ~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~ 265 (535) |..|- ++ .+.++ ... .|++. . ....... ....+ T Consensus 129 ~~~v~---------------~~-----~~~~~---~~~--~y~~~-----------~---~~~~~~~---~~~~~----- 161 (392) T protein:vir:39 129 PSQVN---------------TY-----YFEYE---NGM--YYNIT-----------F---DDPKIEP---ILQAP----- 161 (392) T ss_pred CceeE---------------EE-----EcCCC---ceE--EEEEE-----------e---cCcccce---eEEEc----- Confidence 54440 10 11111 011 11111 0 0000000 00000 Q ss_pred CccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCC--ccchhccC-ccee-- Q lcl|Aclame:pro 266 NPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTK--DWVEDVFK-DFKV-- 338 (535) Q Consensus 266 ~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~--~~~~d~~~-~~~i-- 338 (535) -.. ++++ +....+...|.+|+..+... +........+... ....++|-.+++=-.. ........ ...+ T Consensus 162 --~~e--iih~~~~~~~~~~~G~s~i~~~~~~-i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~ 236 (392) T protein:vir:39 162 --QSD--LIHMKLLSIDGGKTGISPLYSLRRE-SKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFMK 236 (392) T ss_pred --ccc--EEEecCCCCCCccccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHhc Confidence 011 1222 22233445688888765443 3333333333333 3455677766652111 11110000 0011 Q ss_pred eecCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHHH---hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 339 HLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM---GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNV 414 (535) Q Consensus 339 ~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~l---ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~ 414 (535) ...+..++.+|.+.++.-+..++.... .+..+...++++++ ...++.... ..++.... ..+--...|.-++..+ T Consensus 237 ~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~-~~~~~~~~-~~~f~~~~l~P~~~~i 314 (392) T protein:vir:39 237 RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG-DQQSSIQQ-ISGMYASALNRYLRPA 314 (392) T ss_pred cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CcccHHHH-HHHHHHHHHHHHHHHH Confidence 112334566777766666655554433 23344444555443 333443222 22222111 1122244566677777 Q ss_pred HHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHH Q lcl|Aclame:pro 415 SMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEG 494 (535) Q Consensus 415 ~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~ 494 (535) +++++..|- . .+++.+..-|.. ........+.+++.+|.+++..+++.+.+.|+.+.+.. + T Consensus 315 e~~l~~~L~-------~-----~~~~d~~~~~~~--d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e~r-~---- 375 (392) T protein:vir:39 315 ISELEYKLS-------D-----HISVNMRPAIDP--LGDNYLSTISTATRWGALAENQATFVLQEAGYIPKDLP-A---- 375 (392) T ss_pred HHHHHHhcc-------c-----cccccchhhhcc--CHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccccc-h---- Confidence 777665441 1 122222222221 11334566778999999999999999999998743221 1 Q ss_pred HHHhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 495 KATVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 495 ~i~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) ..+.++. +++.+++-.+ T Consensus 376 -----~e~l~~~------~~Gd~~~p~p 392 (392) T protein:vir:39 376 -----PENTNKK------TTGQSNEPVP 392 (392) T ss_pred -----hcCCCCC------CCCCCCCCCC Confidence 0112211 1111222222 No 156 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=94.44 E-value=0.0044 Score=33.50 Aligned_cols=389 Identities=11% Similarity=0.040 Sum_probs=148.3 Q ss_pred CcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 26 SGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 26 ~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) -||.-+-. ..|. . ....|.-+. +|. .-++...+.... .+..++-+..+-....+-+. T Consensus 1 m~~~~~~~----~~~~-~-~~~~~~~~~---~~~--------~~~~~~~g~~v~------~~~al~~~~v~~~i~~ia~~ 57 (419) T protein:vir:57 1 MFIPQFWK----GRPS-E-NRVNWQVVP---GGM--------RSSSSQAGVIIT------PETALALSAVRACVTLLAES 57 (419) T ss_pred Ccchhhhc----cCCc-c-ccccccccc---ccc--------ccccccCCceec------hHHhhccHHHHHHHHHHHHh Confidence 11111100 0000 0 011111110 000 001111111111 12223333333444444444 Q ss_pred Hhhhhhc---ccc--ccc--cCHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccC Q lcl|Aclame:pro 106 MMGQVFS---RDP--IRQ--LPPALEAIVE-DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLY 177 (535) Q Consensus 106 l~G~lF~---k~p--~~~--~p~~l~~l~~-d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~ 177 (535) ++++.|. +.. ..+ ....+..++. ..+ ...+-.+|.+.+....+.+|.+|++|.....|.+ T Consensus 58 ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN-~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~----------- 125 (419) T protein:vir:57 58 VAQLPCVLYRRTENGGREIAFDHPLHDLIRYQPN-RKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDI----------- 125 (419) T ss_pred hccCceEEEEEcCCCceeccccchHHHHHhhccc-cCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcE----------- Confidence 4444332 111 111 2233555553 333 4578889999999999999999999987655532 Q ss_pred CcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccc Q lcl|Aclame:pro 178 RPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSK 257 (535) Q Consensus 178 rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~ 257 (535) --+..++|..|. + ...++++ ..| ++ ...+. T Consensus 126 -~~L~pl~~~~v~-----------------v----~~~~~g~-----~~y-----------~~-----~~~~~------- 155 (419) T protein:vir:57 126 -TELIPINPHKVI-----------------V----LKGPDGM-----PYY-----------DI-----PSIGE------- 155 (419) T ss_pred -EEEEEEcCcceE-----------------E----EECCCce-----EEE-----------EE-----cCCce------- Confidence 255556665541 1 1111110 001 10 00000 Q ss_pred eeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCC---CCccchh-- Q lcl|Aclame:pro 258 HVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGL---TKDWVED-- 331 (535) Q Consensus 258 ~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~---~~~~~~d-- 331 (535) .++. ..| +++.....+...|.||+.-++.. +........+... ....+.|-.+++-- .....++ T Consensus 156 ~~~~-------~~v--ih~r~~~~d~~~G~s~i~~~~~~-i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~ 225 (419) T protein:vir:57 156 ILPM-------RMV--HHIKSFSLDGYIGTSPIQTNPDV-LGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAV 225 (419) T ss_pred EEch-------hhE--EEecCcCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHH Confidence 0110 011 11211122345688888765543 3333333444433 34557787666531 1100000 Q ss_pred -ccCc--ceeeec---CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHH Q lcl|Aclame:pro 332 -VFKD--FKVHLG---SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEA 401 (535) Q Consensus 332 -~~~~--~~i~iG---~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~ 401 (535) .... ....-| ...++.++.+.++.-+..++..... +..+....+++. +...++.......-++....... T Consensus 226 ~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~ 305 (419) T protein:vir:57 226 DAILAKWTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQGLQ 305 (419) T ss_pred HHHHHHHHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHHHH Confidence 0000 001122 2345567776666555555544332 333333344433 23334432111101111111112 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCC Q lcl|Aclame:pro 402 SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAG 481 (535) Q Consensus 402 ~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~g 481 (535) --...|.-++..+++++++.|=.-.. .....|+++.+=.........+.++-.++++|.++.-++++.+ | T Consensus 306 f~~~~l~P~~~~ie~~l~~~ll~~~~-------~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~---g 375 (419) T protein:vir:57 306 YVIYTMLAILKRHESAMMRDLLLPSE-------RRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRME---N 375 (419) T ss_pred HHHHHHHHHHHHHHHHHHhhccCccc-------cCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---C Confidence 23455666777777666543211111 1123445444322222223456667789999999998887654 3 Q ss_pred CCCccCCHHHHHHHHHhch------hhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 482 VASEDDAKAETEGKATVEF------IAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 482 vl~~~~~~eee~~~i~~e~------~~~~~~~~~~~~~~~~~~~~~~ 522 (535) + ++...-++.. +.... .+...+.++......+.+..+| T Consensus 376 l-~p~~ggD~~~--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (419) T protein:vir:57 376 L-TPIPGGDKYL--TPLNMVDSKALTGIGKATPQQLKDIEAILCTRN 419 (419) T ss_pred C-CCCCCcCeee--eccccccccccccccCCCcccCcchhhhhhccC Confidence 2 2211001000 00000 0000001111111111111111 No 157 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=94.26 E-value=0.0049 Score=33.24 Aligned_cols=411 Identities=14% Similarity=0.081 Sum_probs=153.5 Q ss_pred CCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHH-HHHhhhccchhHH Q lcl|Aclame:pro 22 APPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYE-TYLQRAIFYNVTA 100 (535) Q Consensus 22 ~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~-~rl~rA~~~n~~~ 100 (535) ---.-|= .++ .|+-.+..+. +.+++.+.... | .-+ +.. ...|- .+.+.+..+..+. T Consensus 1 ~~~~~~~-----~~~--~p~~~e~~~~---~~~~~~~~~~~---~-~~~--------~~~-~~~~~~~a~~~~~V~acV~ 57 (518) T protein:vir:10 1 MLLANGQ-----TLS--APAMAELSPQ---MQDSYYYAPAV---G-MQL--------ERQ-FSLYGGIYKNQPWVRTVIA 57 (518) T ss_pred CcccCce-----eec--Cchhhhhhhh---hhccccccccc---c-eec--------ccc-cchhhHHHhhhHHHHHHHH Confidence 0000011 122 2222222211 44444442211 0 000 000 00111 1222222233334 Q ss_pred HHHHHHhhhhh---cccccc--c-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHh Q lcl|Aclame:pro 101 RTLDGMMGQVF---SRDPIR--Q-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKL 174 (535) Q Consensus 101 ~tv~~l~G~lF---~k~p~~--~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~ 174 (535) .+-+.++++.| ++.... + ....+..|...-+ ...+-.+|.+.+....+.+|.+|+++.....|.++ T Consensus 58 ~IA~~iA~lpl~l~~~~~~~~~~~~~~~~~~Ll~~PN-~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~------- 129 (518) T protein:vir:10 58 KRAQALARLPVKCMFTSGDTETEESDTGYAKLLADPC-EYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPE------- 129 (518) T ss_pred HHHHhhccCceEEEEEcCCCceeccchHHHHHHcCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------- Confidence 44444444333 322211 1 2233445665543 55788899999999999999999999876555321 Q ss_pred ccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccc Q lcl|Aclame:pro 175 GLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYS 254 (535) Q Consensus 175 ~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~ 254 (535) -+..++|..|. +. .+.+++ .. .|+ +... .+... T Consensus 130 -----~L~~l~p~~v~-----------------v~---~~~~~~---~~--~y~--------------~~~~-~~~~~-- 162 (518) T protein:vir:10 130 -----KLMPMHPSRVA-----------------IK---RNSRTG---RY--EYY--------------FQAG-AGVGT-- 162 (518) T ss_pred -----EEEEECCCceE-----------------EE---EcCCCC---EE--EEE--------------EEec-CCccc-- Confidence 35555555441 00 000000 00 010 0000 00000 Q ss_pred ccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhc Q lcl|Aclame:pro 255 YSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDV 332 (535) Q Consensus 255 ~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~ 332 (535) ..+.. +-.. ++++ +....+...|.+|+.-++. .+.......++... ....+.|-.+++.-.. ..++. T Consensus 163 --~~~~~-----~~~e--ViHir~~s~dg~~~G~spi~~a~~-~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~-ls~e~ 231 (518) T protein:vir:10 163 --QLVSF-----ADDE--VVPIRFFNPDGLERGLSLMESLKS-TIFSEDSSRNATAAMWKNAGRPNLVLRHEKR-LSEAA 231 (518) T ss_pred --eEEEe-----cCCc--EEEecCCCCCcccccccHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccEEEecCCC-CCHHH Confidence 00000 0001 1112 1122233467888865543 34444444444433 3455778777764221 11111 Q ss_pred c---Cc--ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHH Q lcl|Aclame:pro 333 F---KD--FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEE 400 (535) Q Consensus 333 ~---~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~ 400 (535) . .. +...-|. ..++.++.+.++.-+..++..... +..+....++++ +...++..... . +-+.++. T Consensus 232 ~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~-~--t~sn~eq 308 (518) T protein:vir:10 232 QQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDR-A--TFSNISA 308 (518) T ss_pred HHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCC-C--CchhHHH Confidence 0 00 0011232 235567777666655555443321 222222233322 23334422111 1 1122221 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHH Q lcl|Aclame:pro 401 ---ASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGL 477 (535) Q Consensus 401 ---~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L 477 (535) .--+..|.-+...+++++++.|- .. .+ ....|+++.+-.......+.+.++.+++++|.++.-.+++.+ T Consensus 309 ~~~~f~~~tL~P~l~~ie~~ln~~L~--~~-~~-----~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~ 380 (518) T protein:vir:10 309 QMRAFYRDTMAIPIARIQSAMDKYVG--QY-WV-----RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIM 380 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--cc-cc-----CCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 22244567777777777766541 11 11 123455554333333334567778899999999988777544 Q ss_pred HhCCCCCccCCHHHHH------HHHHhc--hhhcccCCCcCCCCCCCcc-cccccccccCCCCCCCC Q lcl|Aclame:pro 478 RRAGVASEDDAKAETE------GKATVE--FIAKTAAAGKVGDAASGGT-NKAKLNNGNGGGNQAGN 535 (535) Q Consensus 478 ~r~gvl~~~~~~eee~------~~i~~e--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 535 (535) |+-+-+...-++. ..+... .......++.+.+++.... ...+..++..++...-+ T Consensus 381 ---Gl~pie~~~gD~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (518) T protein:vir:10 381 ---GLPRSDDPKADELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGLSPTN 444 (518) T ss_pred ---CCCCCCCCCCCeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCCCCCccc Confidence 4222111111100 000000 0000000000000000000 00000011111000000 No 158 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=94.21 E-value=0.0051 Score=33.17 Aligned_cols=411 Identities=14% Similarity=0.085 Sum_probs=157.4 Q ss_pred CCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHH-HHHHhhhccchhHH Q lcl|Aclame:pro 22 APPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRY-ETYLQRAIFYNVTA 100 (535) Q Consensus 22 ~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y-~~rl~rA~~~n~~~ 100 (535) ---.-|= .|+ .|+-.+..+ -++|.+.|.... ..+- +... ..| ..+.+.+..+..+. T Consensus 1 ~~~~~~~-----~~~--~p~~~~~~~---~~~~~~~~~~~~------g~~~------~~~~-~~~~~~~~~~~~V~acV~ 57 (518) T protein:vir:78 1 MLLANGQ-----TLS--APAMAELSP---QMQDSYYYAPAV------GMQL------ERQF-SLYGGIYKNQPWVRTVIA 57 (518) T ss_pred CcccCce-----eec--cchhhhhhh---hhhhccccccee------ceec------cccc-chhhHHhhhhHHHHHHHH Confidence 0000011 122 233222222 256666553221 0110 0000 011 11222222233444 Q ss_pred HHHHHHhhhhh---cccccc--c-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHh Q lcl|Aclame:pro 101 RTLDGMMGQVF---SRDPIR--Q-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKL 174 (535) Q Consensus 101 ~tv~~l~G~lF---~k~p~~--~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~ 174 (535) .+-+.++++.| ++.... + ....+..|+..-+ ...+-.+|.+.+....+.+|.+|+++.....|.++ T Consensus 58 ~IA~~iA~lp~~l~~~~~~~~~~~~~~~~~~Ll~~PN-~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~------- 129 (518) T protein:vir:78 58 KRAQALARLPVKCMFTSGDTETEEHDTGYAKLLADPC-EYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPE------- 129 (518) T ss_pred HHHHhhccCceEEEEEcCCccccccchHHHHHHhCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEE------- Confidence 44444444433 222111 1 2233455665544 45678899999999999999999999876554321 Q ss_pred ccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccc Q lcl|Aclame:pro 175 GLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYS 254 (535) Q Consensus 175 ~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~ 254 (535) -+..++|..|. +.. +.++. ....+|+ .. ..... T Consensus 130 -----~L~~l~p~~Vt-----------------v~~---~~~~~---~~~y~~~----------------~~-~~~~~-- 162 (518) T protein:vir:78 130 -----KLMPMHPSRVA-----------------IKR---NSRTG---RYEYYFQ----------------AG-AGVGT-- 162 (518) T ss_pred -----EEEEECCCceE-----------------EEE---cCCCC---EEEEEEE----------------ec-CCccc-- Confidence 34555554441 100 00000 0000000 00 00000 Q ss_pred ccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhc Q lcl|Aclame:pro 255 YSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDV 332 (535) Q Consensus 255 ~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~ 332 (535) ..+.. +-..| +++ +....+...|.+|+.-++.. +.......++... ....+.|..+++.-.. ..++. T Consensus 163 --~~~~~-----~~~eI--iHir~~~~dg~~~G~Spi~~~~~~-i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~-ls~e~ 231 (518) T protein:vir:78 163 --QLVSF-----ADDEV--VPIRFFNPDGLERGLSLMESLKST-IFSEDSSRNATAAMWKNAGRPNLVLRHEKR-LSPEA 231 (518) T ss_pred --eeEEe-----cCCcE--EEecCCCCCcccccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCCccEEEecCCC-CCHHH Confidence 00000 00111 111 11122334677888765543 3443444444433 4556788777764221 11111 Q ss_pred cC--cc---eeeecC---cccccCCCCCccceeecCcchhHHHHHHHHH---HHHHH---HhhhhhcccccccchHHHHH Q lcl|Aclame:pro 333 FK--DF---KVHLGS---RAIIPLPQGATAGILQITPNSVPFEAMTHKE---SQMIA---MGANLLVKSGGNRTFGEAQQ 398 (535) Q Consensus 333 ~~--~~---~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e---~qm~~---lga~~l~~~~~~~ta~~a~~ 398 (535) .+ .. ...-|. ..++.++.+.++.-+..++... +.++... .+++. +...++.......-++.... T Consensus 232 ~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~--q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~ 309 (518) T protein:vir:78 232 QQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEM--QFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQ 309 (518) T ss_pred HHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHH--HHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHH Confidence 00 00 011232 2356677766666555544432 3333222 33322 22333322111111111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHH Q lcl|Aclame:pro 399 EEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLR 478 (535) Q Consensus 399 ~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~ 478 (535) ...--+..|.-++.++++++++.| +.. .+ ....|+++.+-.........+.++.+++++|.++.-.+++.+ T Consensus 310 ~~~f~~~tL~P~~~~ie~eln~~L--~~~-~~-----~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~- 380 (518) T protein:vir:78 310 MRAFYRDTMAIPIARIQSAMDKYV--GQY-WV-----RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIM- 380 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--ccc-cc-----CcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh- Confidence 122234457777778887777654 111 11 123455554433333334567788899999999998877654 Q ss_pred hCCCCCccCCHHHHHHHHHhchh--hcc-------cCCCcCCCCCCCcc-cccccccccCCCCCCCC Q lcl|Aclame:pro 479 RAGVASEDDAKAETEGKATVEFI--AKT-------AAAGKVGDAASGGT-NKAKLNNGNGGGNQAGN 535 (535) Q Consensus 479 r~gvl~~~~~~eee~~~i~~e~~--~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 535 (535) |+-+-++..-++. -+..... +.. ..++.+.+++.... ...+..++..++...-+ T Consensus 381 --gl~pie~~~gD~~-~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (518) T protein:vir:78 381 --GLPRSDDPKADEL-YANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPASVPGLSPTN 444 (518) T ss_pred --CCCCCCCCCCcee-eecccceecccccccccCCCCCCCCCCCCcccccccccCccccCCCCCccc Confidence 3322111111000 0000000 000 00000000000000 00000111111111111 No 159 >protein:vir:108295 Length: 711 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:2007 # MgeName: BA3 # Cross-refs: genbank:acc:YP_001552284;genbank:gi:160700609;genbank:GeneID:5758811 Probab=94.09 E-value=0.0054 Score=33.00 Aligned_cols=487 Identities=10% Similarity=-0.000 Sum_probs=185.9 Q ss_pred CCcchhhhhhhhhcceecCCCCCC-CCcccccCC-CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhhCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPP-TSGLGPSLP-NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEYLPMPSV 75 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~M~-~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~YLP~~~~ 75 (535) ||.||.. |.| | |.|- .+=+-+.-. +-.. .+.... ..++.+......+++.. ..|. .+ T Consensus 1 ~~~~~~~------~~~--~-~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~r~~a~~d~~fy---~G 62 (711) T protein:vir:10 1 MAKKQKK------SRV--E-QLYAKKAKVYAKNNDDDRA---LLATAR---ERARDGATYWKDNWEAAEDDLKFL---GG 62 (711) T ss_pred CCccccc------ccc--c-chhHHHHHhcccCcchHHH---HHHHHH---HHHHHHHhhhHHHHHHHHHHHHHh---CC Confidence 8888742 222 1 1110 000001101 0111 111112 22223333343333222 3344 33 Q ss_pred CCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcccccccc-C-------------------------------HHH Q lcl|Aclame:pro 76 DSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQL-P-------------------------------PAL 123 (535) Q Consensus 76 ~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~-p-------------------------------~~l 123 (535) ..-+.+....-+.+-...+.+|.++++|+..+|.-=.+.+.+.+ | +.+ T Consensus 63 ~Qw~~~~~~~l~~~g~p~~~~N~i~~~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Ae~l 142 (711) T protein:vir:10 63 EQWPSQVRTERELEQRPCLVNNVLPTFVDQVLGDQRQNRPAIKVSSTEVTRVPDAESGEDTTLKISNVAGKNDYELAEVF 142 (711) T ss_pred CCCCHHHHHHHHhcCCCcEEEcchHHHHHHHhhhHhhCCcceEEecccccchhhhhhhhccccccccCCChhHHHHHHHH Confidence 33333333434444455667999999999999999877776643 3 112 Q ss_pred HHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccchHHHHhccCCcEEEEe-chhhhh-cceeeecCC Q lcl|Aclame:pro 124 EAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTVLEQKLGLYRPTITLV-HPTSII-NWRTKLVGG 199 (535) Q Consensus 124 ~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ad~~~~~~rPy~~~~-~~~~Ii-~w~~~~~~g 199 (535) ..+++.+- +-++.+.-...++..++.+|.+|+=| ||-..+.. ...+-+..+ +|.+|+ ++.....+. T Consensus 143 ~~~~~~~~-~~~~~~~~~s~af~d~~~~G~G~~ev~~d~~~~d~~---------~~e~~i~~v~~p~~v~~Dp~a~~~D~ 212 (711) T protein:vir:10 143 TGLIKNIE-YNCDAETEYDIAFQGAVESGMGYLRVRSDYLADDSF---------EQDLIIEAIQNQFSVTIDPDAKKRDR 212 (711) T ss_pred HHHHHHHH-HhcChhHHHHHHHHHhhhcCcceEEEEecccCCCCC---------CCCeEEeeecChhheeeCccccccCh Confidence 22222211 22466777889999999999888644 44221110 001344444 466543 222211111 Q ss_pred ccceeEEEEEEEEe---------e---------c-CCCcccceeeEEEEEeecC--CceEEEEEEe-------ee-cc-- Q lcl|Aclame:pro 200 KSVISLVVIQENVL---------A---------Q-DDGFETTYVQQWRVLQLNA--EGNYQVERWR-------RE-TQ-- 248 (535) Q Consensus 200 ~~~Lt~v~l~E~~~---------~---------~-~d~f~~~~~~~~rvl~l~~--~g~y~v~~w~-------~~-~~-- 248 (535) . .--|+..+..+. + . .+.+.+-...++||.+... +..+++..+. .. .. T Consensus 213 s-Dar~~~~~~~~~~~~~~~~yp~~a~~~~~~~~~~~~~~~~~~~~vrv~E~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (711) T protein:vir:10 213 S-DMNWCLIDDTMSKEKFKALYPDATAEPVYEDSVADYDTWFTEKSVRVSEYFTREPVIREIALLSDGRSFWLDALEDIV 291 (711) T ss_pred h-hhcceeeeecCCHHHHHHhCCchhhhhhhcccccccCcccCcceeeEEEEEeeeeeeeEEEeecCCceeccCcchhHH Confidence 0 011111111110 0 0 0111111122334332210 1111111000 00 00 Q ss_pred -----C-------------Cc--cccccceeeeccCCCccceeEEEEeccCC---CcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 249 -----E-------------EM--YYSYSKHVPTDGNGNPFKEIPFQFIGPLD---NNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 249 -----~-------------~~--~~~~~~~~~~~~~~~~l~~IP~v~~~~~~---~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) . .. ....+..++......+.++||||+|.... .+......-+.++.+.+..++...| T Consensus 292 ~~~~~~g~~~~~~~~~~~~~v~~~~~~G~~~L~~~~p~~~~~~P~vp~~g~r~~~d~~~~~~G~vr~~~d~Qr~~N~~~s 371 (711) T protein:vir:10 292 DELLEAGISIVRTRKVKTFKTYWRKITGANVLEGPVEIPSTTIPVIPVWGKSLIIKKKEIFRSIIRHSKDAQRMANYWDS 371 (711) T ss_pred HHHHhcCchhhhhhhhceeeEEEEEEecceeecCCCCCCCCcccEEEEeeeeeccccccccchhhhhhhhhHHHHHHHHH Confidence 0 00 00011122212122344779998764332 1222223346788999999999999 Q ss_pred HHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCCCCC----ccceeecCcc-hhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLPQGA----TAGILQITPN-SVPFEAMTHKESQMIAM 379 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~----~~~~~e~~~~-~l~~~~l~~~e~qm~~l 379 (535) -+.+++..++.+..++. |.-...++..... + .-++.++.+-+++ .+.+....+- ....+.|+.....|..+ T Consensus 372 ~~~~~l~~~~~~~~~~~~gai~~~~~~~~e~--~-~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~i~~~ 448 (711) T protein:vir:10 372 AATETVALAPKAPFIGSEGNVEGREDEWEQA--N-TKNFSLLTYIPQYQGDPGPRRQPPAAVPAAELTLGQNSVEKIKST 448 (711) T ss_pred HHHHHHHhcCCCceeecCcccCChHHHHHhc--c-ccCCCeeEecccccCcCCccccCCCCCCHHHHHHHHHHHHHHHHH Confidence 99999988888766653 4322211111110 0 1123334332222 3444332222 12234455554444333 Q ss_pred -hh--hhhcccccccchHHH-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCC-------CCCceeEEEEec Q lcl|Aclame:pro 380 -GA--NLLVKSGGNRTFGEA-QQEEASEQSILSACTKNV----SMAFRKALRWANQFQTGI-------VNDETVEYNLNT 444 (535) Q Consensus 380 -ga--~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~~----~~a~~~~lr~~a~~~g~~-------~~~~~~~v~~n~ 444 (535) |. .++...+ +.+++.+ .....+..-.|..+..|+ ....+.+|.++..|+... .++..-.|.+|. T Consensus 449 tGi~~~~~G~~~-n~~Sg~ai~~~q~qg~~~l~~~~dn~~~~~~~~g~~ll~li~~~~~~er~~rI~ged~~~~~v~ln~ 527 (711) T protein:vir:10 449 MGMYDASLGAMG-NETSGRAIIARQRQGDRGSFAFIDNLTKSIRRVGKILVEMIPHIYDTERVVRLKFPDETEDFVKLNE 527 (711) T ss_pred hCCChHHcCCCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCCCcceEEecc Confidence 32 2233333 3344433 333333333344444444 455566777888877321 000000112221 Q ss_pred ---------------------------ccCCccCCHHHHHHHHHHHhcCCCCHH--HHHHHHHhCCCCCccCCHHHHHHH Q lcl|Aclame:pro 445 ---------------------------DFPAARLTPNERAELILEWQQGAITFK--EMRAGLRRAGVASEDDAKAETEGK 495 (535) Q Consensus 445 ---------------------------df~~~~~d~~~~~al~~l~~~G~is~e--t~~~~L~r~gvl~~~~~~eee~~~ 495 (535) -........+.+.+|+.+.+. ++.- .+...+-+ +.+.-..++...+ T Consensus 528 ~~~~~~~G~~~~~nDi~~g~~Dv~i~~~p~~~s~r~~~~~~l~ql~~~--~p~~~~~~~~~il~---~~d~p~~~el~e~ 602 (711) T protein:vir:10 528 QIFDEESGEWVTIHDLNVQKYDVVVTTGPAFATQRIEAAEAMIQFAQA--VPSAAAVMADLIAQ---NMDWPGADVIAER 602 (711) T ss_pred cccccccccceeeeccceeeeEEEEeeccCchhHHHHHHHHHHHHHhh--cchhhhHHHHHHHH---hcCCCCHHHHHHH Confidence 111111123334445554432 2210 11111111 0111123344444 Q ss_pred HHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 496 ATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 496 i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.... .+.....+............ ..+++ T Consensus 603 lr~~~----~~~~~~~~~~~~~qq~~~e~------qq~~~ 632 (711) T protein:vir:10 603 LKKIV----PPNVLSKDEREAIEEDMPEQ------TEPTP 632 (711) T ss_pred HHhhc----CcccCcchhhhHHHHHHHHH------HHHHH Confidence 43221 11110000000000000000 00111 No 160 >protein:vir:2764 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:59 # MgeName: Stx2 converting bacteriophage I # Cross-refs: genbank:acc:NP_612881;genbank:gi:20065798;genbank:GeneID:935623 Probab=94.03 E-value=0.0056 Score=32.92 Aligned_cols=465 Identities=11% Similarity=0.021 Sum_probs=178.3 Q ss_pred CCCCCc--cCH-----HHHHHHHHHHHHHHHhcChHHHHHHHh---hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHH Q lcl|Aclame:pro 32 LPNVGY--QRV-----EFGEMLPKWRKIMDCLSGQEAIKAKRE---EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTAR 101 (535) Q Consensus 32 M~~v~~--~hp-----~y~~~~~~w~~i~d~~~G~~~~~~~g~---~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~ 101 (535) |.|=.. .|+ ........+..+...+.....+|+... .|. .+..-+++-...-+.+-...+.+|.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy---~G~Qw~~~~~~~l~~~g~p~~~~N~i~~ 77 (714) T protein:vir:27 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYY---DGDQLPPEVLQVLKDRGQPMTIHNLIAP 77 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---cCCCCCHHHHHHHHhcCCCcEEeccHHH Confidence 553110 011 112222233333333444555654322 343 2333333333334444445666999999 Q ss_pred HHHHHhhhhhcccccccc-CH-----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCccc Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQL-PP-----------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPV 167 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~-p~-----------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~ 167 (535) +|+..+|.-=++.+.+.+ |. .|..+++.+- +-++.+.-...+|..++.+|.+|+=| |+.+.+. T Consensus 78 ~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~-~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~-- 154 (714) T protein:vir:27 78 TVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADAC-RLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGP-- 154 (714) T ss_pred HHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHhhhcCcceEEeccccCCCCC-- Confidence 999999999777666542 21 1222222211 12456777889999999999988544 3333222 Q ss_pred chHHHHhccCCcEEEEechhhhhcceee--ecCCccceeEEEEEEEEe---------e---------------------- Q lcl|Aclame:pro 168 TVLEQKLGLYRPTITLVHPTSIINWRTK--LVGGKSVISLVVIQENVL---------A---------------------- 214 (535) Q Consensus 168 t~ad~~~~~~rPy~~~~~~~~Ii~w~~~--~~~g~~~Lt~v~l~E~~~---------~---------------------- 214 (535) .+++..++|.+|+ |+-. ..+. ..--|+..+..+. + T Consensus 155 ----------~i~i~~v~p~~v~-~Dp~a~~~D~-sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~ 222 (714) T protein:vir:27 155 ----------EFKVSTVSRNEVF-WDWLSREADL-SDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTE 222 (714) T ss_pred ----------CeEEEecchhhee-eccccccCCh-hhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccc Confidence 2566666666653 3311 0000 0011111111000 0 Q ss_pred ------------------cCCCcccceeeEEEEEeecCCce-EEEEEEeeeccCCc-c---------------------- Q lcl|Aclame:pro 215 ------------------QDDGFETTYVQQWRVLQLNAEGN-YQVERWRRETQEEM-Y---------------------- 252 (535) Q Consensus 215 ------------------~~d~f~~~~~~~~rvl~l~~~g~-y~v~~w~~~~~~~~-~---------------------- 252 (535) ..+.|......++||.+. |.. +....+.....+.. . T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~--w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~ 300 (714) T protein:vir:27 223 GQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVV--YYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVG 300 (714) T ss_pred ccccccccchhhhccccccccccccccccEEEEEEE--EEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhcc Confidence 000111122223443332 100 00000000000000 0 Q ss_pred -------ccccceeeeccCCC--ccceeEEEEeccCC-CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee Q lcl|Aclame:pro 253 -------YSYSKHVPTDGNGN--PFKEIPFQFIGPLD-NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT 322 (535) Q Consensus 253 -------~~~~~~~~~~~~~~--~l~~IP~v~~~~~~-~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~ 322 (535) ..+........+.. |-+.+|||++.... .....-.--+.++.+.+..++...|-+.+++. +.-..... T Consensus 301 ~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~--~~~~~~~~ 378 (714) T protein:vir:27 301 RVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ--AKRVIMDE 378 (714) T ss_pred ccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhhc--CCceeeec Confidence 00000001111222 34568887653322 11111123456677778878777777777763 33333444 Q ss_pred CCCCccchhccCcceeeecCcccccCCCCCc-----cceeecCc-chh---HHHHHHHHHHHHHHHh-h--hhhcccccc Q lcl|Aclame:pro 323 GLTKDWVEDVFKDFKVHLGSRAIIPLPQGAT-----AGILQITP-NSV---PFEAMTHKESQMIAMG-A--NLLVKSGGN 390 (535) Q Consensus 323 G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~-----~~~~e~~~-~~l---~~~~l~~~e~qm~~lg-a--~~l~~~~~~ 390 (535) |....+++...+. +. =+++++.+-++.+ ...+++.+ ..+ ..+.|+...+.+..++ . .++... ++ T Consensus 379 ~a~~~~d~~~~e~--~a-rp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~-~n 454 (714) T protein:vir:27 379 DATQLSDNDLMEQ--IE-RPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQD-SG 454 (714) T ss_pred CcccccHHHHHHh--cc-CCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCC-cc Confidence 4333322221110 00 0123333321111 12223322 222 2355555555554443 2 233333 34 Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC--------CCc--eeEEEEecc---------- Q lcl|Aclame:pro 391 RTFGEA-QQEEASEQSILSACTKNVSMAF----RKALRWANQFQTGIV--------NDE--TVEYNLNTD---------- 445 (535) Q Consensus 391 ~ta~~a-~~~~~~~~S~L~~~a~~~~~a~----~~~lr~~a~~~g~~~--------~~~--~~~v~~n~d---------- 445 (535) .+++.+ .....+..-.|..+..|+..+. +.+|.++..|+...- ++. .-.+.+|.+ T Consensus 455 a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi 534 (714) T protein:vir:27 455 ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDI 534 (714) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccc Confidence 455543 2222333334455555555554 456667878775310 000 011222211 Q ss_pred ------cC------CccCCHHHHHHHHHHHhcCCCCHHHH---HH-HHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc Q lcl|Aclame:pro 446 ------FP------AARLTPNERAELILEWQQGAITFKEM---RA-GLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK 509 (535) Q Consensus 446 ------f~------~~~~d~~~~~al~~l~~~G~is~et~---~~-~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~ 509 (535) +. ....-.+.+.+|+++.+. ++-+.. .. .|.-.. --..++..++|.....-. . T Consensus 535 ~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d----~p~~~el~~~ir~~~~~~-~---- 603 (714) T protein:vir:27 535 SRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLD----VPQKQEFVERIRAALGTP-K---- 603 (714) T ss_pred eeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcC----CCCHHHHHHHHHHHcCCC-C---- Confidence 11 001114556677777754 222211 11 111111 123455666665432111 0 Q ss_pred CCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 510 VGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.+.-+.....+... ----..+.+ T Consensus 604 ~~~~~~~e~q~~~~~--~q~~~~~q~ 627 (714) T protein:vir:27 604 SPDEMTPEEQEVAAQ--QQALQQQQA 627 (714) T ss_pred CccccchhhHHHHHH--HHHHHHHHH Confidence 000000000000000 000000000 No 161 >protein:vir:9950 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:179 # MgeName: Stx1 converting bacteriophage # Cross-refs: genbank:acc:NP_859080;genbank:gi:32170835;genbank:GeneID:2653184 Probab=94.03 E-value=0.0056 Score=32.92 Aligned_cols=465 Identities=11% Similarity=0.021 Sum_probs=178.3 Q ss_pred CCCCCc--cCH-----HHHHHHHHHHHHHHHhcChHHHHHHHh---hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHH Q lcl|Aclame:pro 32 LPNVGY--QRV-----EFGEMLPKWRKIMDCLSGQEAIKAKRE---EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTAR 101 (535) Q Consensus 32 M~~v~~--~hp-----~y~~~~~~w~~i~d~~~G~~~~~~~g~---~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~ 101 (535) |.|=.. .|+ ........+..+...+.....+|+... .|. .+..-+++-...-+.+-...+.+|.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy---~G~Qw~~~~~~~l~~~g~p~~~~N~i~~ 77 (714) T protein:vir:99 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYY---DGDQLPPEVLQVLKDRGQPMTIHNLIAP 77 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---cCCCCCHHHHHHHHhcCCCcEEeccHHH Confidence 553110 011 112222233333333444555654322 343 2333333333334444445666999999 Q ss_pred HHHHHhhhhhcccccccc-CH-----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCccc Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQL-PP-----------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPV 167 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~-p~-----------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~ 167 (535) +|+..+|.-=++.+.+.+ |. .|..+++.+- +-++.+.-...+|..++.+|.+|+=| |+.+.+. T Consensus 78 ~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~-~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~-- 154 (714) T protein:vir:99 78 TVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADAC-RLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGP-- 154 (714) T ss_pred HHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHhhhcCcceEEeccccCCCCC-- Confidence 999999999777666542 21 1222222211 12456777889999999999988544 3333222 Q ss_pred chHHHHhccCCcEEEEechhhhhcceee--ecCCccceeEEEEEEEEe---------e---------------------- Q lcl|Aclame:pro 168 TVLEQKLGLYRPTITLVHPTSIINWRTK--LVGGKSVISLVVIQENVL---------A---------------------- 214 (535) Q Consensus 168 t~ad~~~~~~rPy~~~~~~~~Ii~w~~~--~~~g~~~Lt~v~l~E~~~---------~---------------------- 214 (535) .+++..++|.+|+ |+-. ..+. ..--|+..+..+. + T Consensus 155 ----------~i~i~~v~p~~v~-~Dp~a~~~D~-sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~ 222 (714) T protein:vir:99 155 ----------EFKVSTVSRNEVF-WDWLSREADL-SDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTE 222 (714) T ss_pred ----------CeEEEecchhhee-eccccccCCh-hhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccc Confidence 2566666666653 3311 0000 0011111111000 0 Q ss_pred ------------------cCCCcccceeeEEEEEeecCCce-EEEEEEeeeccCCc-c---------------------- Q lcl|Aclame:pro 215 ------------------QDDGFETTYVQQWRVLQLNAEGN-YQVERWRRETQEEM-Y---------------------- 252 (535) Q Consensus 215 ------------------~~d~f~~~~~~~~rvl~l~~~g~-y~v~~w~~~~~~~~-~---------------------- 252 (535) ..+.|......++||.+. |.. +....+.....+.. . T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~--w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~ 300 (714) T protein:vir:99 223 GQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVV--YYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVG 300 (714) T ss_pred ccccccccchhhhccccccccccccccccEEEEEEE--EEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhcc Confidence 000111122223443332 100 00000000000000 0 Q ss_pred -------ccccceeeeccCCC--ccceeEEEEeccCC-CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee Q lcl|Aclame:pro 253 -------YSYSKHVPTDGNGN--PFKEIPFQFIGPLD-NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT 322 (535) Q Consensus 253 -------~~~~~~~~~~~~~~--~l~~IP~v~~~~~~-~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~ 322 (535) ..+........+.. |-+.+|||++.... .....-.--+.++.+.+..++...|-+.+++. +.-..... T Consensus 301 ~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~--~~~~~~~~ 378 (714) T protein:vir:99 301 RVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ--AKRVIMDE 378 (714) T ss_pred ccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhhc--CCceeeec Confidence 00000001111222 34568887653322 11111123456677778878777777777763 33333444 Q ss_pred CCCCccchhccCcceeeecCcccccCCCCCc-----cceeecCc-chh---HHHHHHHHHHHHHHHh-h--hhhcccccc Q lcl|Aclame:pro 323 GLTKDWVEDVFKDFKVHLGSRAIIPLPQGAT-----AGILQITP-NSV---PFEAMTHKESQMIAMG-A--NLLVKSGGN 390 (535) Q Consensus 323 G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~-----~~~~e~~~-~~l---~~~~l~~~e~qm~~lg-a--~~l~~~~~~ 390 (535) |....+++...+. +. =+++++.+-++.+ ...+++.+ ..+ ..+.|+...+.+..++ . .++... ++ T Consensus 379 ~a~~~~d~~~~e~--~a-rp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~-~n 454 (714) T protein:vir:99 379 DATQLSDNDLMEQ--IE-RPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQD-SG 454 (714) T ss_pred CcccccHHHHHHh--cc-CCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCC-cc Confidence 4333322221110 00 0123333321111 12223322 222 2355555555554443 2 233333 34 Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC--------CCc--eeEEEEecc---------- Q lcl|Aclame:pro 391 RTFGEA-QQEEASEQSILSACTKNVSMAF----RKALRWANQFQTGIV--------NDE--TVEYNLNTD---------- 445 (535) Q Consensus 391 ~ta~~a-~~~~~~~~S~L~~~a~~~~~a~----~~~lr~~a~~~g~~~--------~~~--~~~v~~n~d---------- 445 (535) .+++.+ .....+..-.|..+..|+..+. +.+|.++..|+...- ++. .-.+.+|.+ T Consensus 455 a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi 534 (714) T protein:vir:99 455 ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDI 534 (714) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccc Confidence 455543 2222333334455555555554 456667878775310 000 011222211 Q ss_pred ------cC------CccCCHHHHHHHHHHHhcCCCCHHHH---HH-HHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc Q lcl|Aclame:pro 446 ------FP------AARLTPNERAELILEWQQGAITFKEM---RA-GLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK 509 (535) Q Consensus 446 ------f~------~~~~d~~~~~al~~l~~~G~is~et~---~~-~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~ 509 (535) +. ....-.+.+.+|+++.+. ++-+.. .. .|.-.. --..++..++|.....-. . T Consensus 535 ~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d----~p~~~el~~~ir~~~~~~-~---- 603 (714) T protein:vir:99 535 SRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLD----VPQKQEFVERIRAALGTP-K---- 603 (714) T ss_pred eeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcC----CCCHHHHHHHHHHHcCCC-C---- Confidence 11 001114556677777754 222211 11 111111 123455666665432111 0 Q ss_pred CCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 510 VGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.+.-+.....+... ----..+.+ T Consensus 604 ~~~~~~~e~q~~~~~--~q~~~~~q~ 627 (714) T protein:vir:99 604 SPDEMTPEEQEVAAQ--QQALQQQQA 627 (714) T ss_pred CccccchhhHHHHHH--HHHHHHHHH Confidence 000000000000000 000000000 No 162 >protein:vir:817 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:16 # MgeName: VT2-Sa # Cross-refs: genbank:acc:NP_050550;genbank:gi:9633447;genbank:GeneID:1262279 Probab=94.03 E-value=0.0056 Score=32.92 Aligned_cols=465 Identities=11% Similarity=0.021 Sum_probs=178.3 Q ss_pred CCCCCc--cCH-----HHHHHHHHHHHHHHHhcChHHHHHHHh---hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHH Q lcl|Aclame:pro 32 LPNVGY--QRV-----EFGEMLPKWRKIMDCLSGQEAIKAKRE---EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTAR 101 (535) Q Consensus 32 M~~v~~--~hp-----~y~~~~~~w~~i~d~~~G~~~~~~~g~---~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~ 101 (535) |.|=.. .|+ ........+..+...+.....+|+... .|. .+..-+++-...-+.+-...+.+|.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy---~G~Qw~~~~~~~l~~~g~p~~~~N~i~~ 77 (714) T protein:vir:81 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYY---DGDQLPPEVLQVLKDRGQPMTIHNLIAP 77 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---cCCCCCHHHHHHHHhcCCCcEEeccHHH Confidence 553110 011 112222233333333444555654322 343 2333333333334444445666999999 Q ss_pred HHHHHhhhhhcccccccc-CH-----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCccc Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQL-PP-----------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPV 167 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~-p~-----------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~ 167 (535) +|+..+|.-=++.+.+.+ |. .|..+++.+- +-++.+.-...+|..++.+|.+|+=| |+.+.+. T Consensus 78 ~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~-~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~-- 154 (714) T protein:vir:81 78 TVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADAC-RLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGP-- 154 (714) T ss_pred HHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHhhhcCcceEEeccccCCCCC-- Confidence 999999999777666542 21 1222222211 12456777889999999999988544 3333222 Q ss_pred chHHHHhccCCcEEEEechhhhhcceee--ecCCccceeEEEEEEEEe---------e---------------------- Q lcl|Aclame:pro 168 TVLEQKLGLYRPTITLVHPTSIINWRTK--LVGGKSVISLVVIQENVL---------A---------------------- 214 (535) Q Consensus 168 t~ad~~~~~~rPy~~~~~~~~Ii~w~~~--~~~g~~~Lt~v~l~E~~~---------~---------------------- 214 (535) .+++..++|.+|+ |+-. ..+. ..--|+..+..+. + T Consensus 155 ----------~i~i~~v~p~~v~-~Dp~a~~~D~-sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~ 222 (714) T protein:vir:81 155 ----------EFKVSTVSRNEVF-WDWLSREADL-SDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTE 222 (714) T ss_pred ----------CeEEEecchhhee-eccccccCCh-hhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccc Confidence 2566666666653 3311 0000 0011111111000 0 Q ss_pred ------------------cCCCcccceeeEEEEEeecCCce-EEEEEEeeeccCCc-c---------------------- Q lcl|Aclame:pro 215 ------------------QDDGFETTYVQQWRVLQLNAEGN-YQVERWRRETQEEM-Y---------------------- 252 (535) Q Consensus 215 ------------------~~d~f~~~~~~~~rvl~l~~~g~-y~v~~w~~~~~~~~-~---------------------- 252 (535) ..+.|......++||.+. |.. +....+.....+.. . T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~--w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~ 300 (714) T protein:vir:81 223 GQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVV--YYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVG 300 (714) T ss_pred ccccccccchhhhccccccccccccccccEEEEEEE--EEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhcc Confidence 000111122223443332 100 00000000000000 0 Q ss_pred -------ccccceeeeccCCC--ccceeEEEEeccCC-CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee Q lcl|Aclame:pro 253 -------YSYSKHVPTDGNGN--PFKEIPFQFIGPLD-NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT 322 (535) Q Consensus 253 -------~~~~~~~~~~~~~~--~l~~IP~v~~~~~~-~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~ 322 (535) ..+........+.. |-+.+|||++.... .....-.--+.++.+.+..++...|-+.+++. +.-..... T Consensus 301 ~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~--~~~~~~~~ 378 (714) T protein:vir:81 301 RVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ--AKRVIMDE 378 (714) T ss_pred ccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhhc--CCceeeec Confidence 00000001111222 34568887653322 11111123456677778878777777777763 33333444 Q ss_pred CCCCccchhccCcceeeecCcccccCCCCCc-----cceeecCc-chh---HHHHHHHHHHHHHHHh-h--hhhcccccc Q lcl|Aclame:pro 323 GLTKDWVEDVFKDFKVHLGSRAIIPLPQGAT-----AGILQITP-NSV---PFEAMTHKESQMIAMG-A--NLLVKSGGN 390 (535) Q Consensus 323 G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~-----~~~~e~~~-~~l---~~~~l~~~e~qm~~lg-a--~~l~~~~~~ 390 (535) |....+++...+. +. =+++++.+-++.+ ...+++.+ ..+ ..+.|+...+.+..++ . .++... ++ T Consensus 379 ~a~~~~d~~~~e~--~a-rp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~-~n 454 (714) T protein:vir:81 379 DATQLSDNDLMEQ--IE-RPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQD-SG 454 (714) T ss_pred CcccccHHHHHHh--cc-CCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCC-cc Confidence 4333322221110 00 0123333321111 12223322 222 2355555555554443 2 233333 34 Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC--------CCc--eeEEEEecc---------- Q lcl|Aclame:pro 391 RTFGEA-QQEEASEQSILSACTKNVSMAF----RKALRWANQFQTGIV--------NDE--TVEYNLNTD---------- 445 (535) Q Consensus 391 ~ta~~a-~~~~~~~~S~L~~~a~~~~~a~----~~~lr~~a~~~g~~~--------~~~--~~~v~~n~d---------- 445 (535) .+++.+ .....+..-.|..+..|+..+. +.+|.++..|+...- ++. .-.+.+|.+ T Consensus 455 a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi 534 (714) T protein:vir:81 455 ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDI 534 (714) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccc Confidence 455543 2222333334455555555554 456667878775310 000 011222211 Q ss_pred ------cC------CccCCHHHHHHHHHHHhcCCCCHHHH---HH-HHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc Q lcl|Aclame:pro 446 ------FP------AARLTPNERAELILEWQQGAITFKEM---RA-GLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK 509 (535) Q Consensus 446 ------f~------~~~~d~~~~~al~~l~~~G~is~et~---~~-~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~ 509 (535) +. ....-.+.+.+|+++.+. ++-+.. .. .|.-.. --..++..++|.....-. . T Consensus 535 ~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d----~p~~~el~~~ir~~~~~~-~---- 603 (714) T protein:vir:81 535 SRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLD----VPQKQEFVERIRAALGTP-K---- 603 (714) T ss_pred eeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcC----CCCHHHHHHHHHHHcCCC-C---- Confidence 11 001114556677777754 222211 11 111111 123455666665432111 0 Q ss_pred CCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 510 VGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.+.-+.....+... ----..+.+ T Consensus 604 ~~~~~~~e~q~~~~~--~q~~~~~q~ 627 (714) T protein:vir:81 604 SPDEMTPEEQEVAAQ--QQALQQQQA 627 (714) T ss_pred CccccchhhHHHHHH--HHHHHHHHH Confidence 000000000000000 000000000 No 163 >protein:vir:3296 Length: 714 # NCBI annotation: putative portal protein # Family: family:all:487 # MgeID: mge:66 # MgeName: 933W # Cross-refs: genbank:acc:NP_049512;genbank:gi:9632518;genbank:GeneID:1262005 Probab=94.03 E-value=0.0056 Score=32.92 Aligned_cols=465 Identities=11% Similarity=0.021 Sum_probs=178.3 Q ss_pred CCCCCc--cCH-----HHHHHHHHHHHHHHHhcChHHHHHHHh---hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHH Q lcl|Aclame:pro 32 LPNVGY--QRV-----EFGEMLPKWRKIMDCLSGQEAIKAKRE---EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTAR 101 (535) Q Consensus 32 M~~v~~--~hp-----~y~~~~~~w~~i~d~~~G~~~~~~~g~---~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~ 101 (535) |.|=.. .|+ ........+..+...+.....+|+... .|. .+..-+++-...-+.+-...+.+|.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy---~G~Qw~~~~~~~l~~~g~p~~~~N~i~~ 77 (714) T protein:vir:32 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYY---DGDQLPPEVLQVLKDRGQPMTIHNLIAP 77 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---cCCCCCHHHHHHHHhcCCCcEEeccHHH Confidence 553110 011 112222233333333444555654322 343 2333333333334444445666999999 Q ss_pred HHHHHhhhhhcccccccc-CH-----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCccc Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQL-PP-----------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPV 167 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~-p~-----------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~ 167 (535) +|+..+|.-=++.+.+.+ |. .|..+++.+- +-++.+.-...+|..++.+|.+|+=| |+.+.+. T Consensus 78 ~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~-~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~-- 154 (714) T protein:vir:32 78 TVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADAC-RLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGP-- 154 (714) T ss_pred HHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHhhhcCcceEEeccccCCCCC-- Confidence 999999999777666542 21 1222222211 12456777889999999999988544 3333222 Q ss_pred chHHHHhccCCcEEEEechhhhhcceee--ecCCccceeEEEEEEEEe---------e---------------------- Q lcl|Aclame:pro 168 TVLEQKLGLYRPTITLVHPTSIINWRTK--LVGGKSVISLVVIQENVL---------A---------------------- 214 (535) Q Consensus 168 t~ad~~~~~~rPy~~~~~~~~Ii~w~~~--~~~g~~~Lt~v~l~E~~~---------~---------------------- 214 (535) .+++..++|.+|+ |+-. ..+. ..--|+..+..+. + T Consensus 155 ----------~i~i~~v~p~~v~-~Dp~a~~~D~-sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~ 222 (714) T protein:vir:32 155 ----------EFKVSTVSRNEVF-WDWLSREADL-SDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTE 222 (714) T ss_pred ----------CeEEEecchhhee-eccccccCCh-hhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccc Confidence 2566666666653 3311 0000 0011111111000 0 Q ss_pred ------------------cCCCcccceeeEEEEEeecCCce-EEEEEEeeeccCCc-c---------------------- Q lcl|Aclame:pro 215 ------------------QDDGFETTYVQQWRVLQLNAEGN-YQVERWRRETQEEM-Y---------------------- 252 (535) Q Consensus 215 ------------------~~d~f~~~~~~~~rvl~l~~~g~-y~v~~w~~~~~~~~-~---------------------- 252 (535) ..+.|......++||.+. |.. +....+.....+.. . T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~--w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~ 300 (714) T protein:vir:32 223 GQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVV--YYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVG 300 (714) T ss_pred ccccccccchhhhccccccccccccccccEEEEEEE--EEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhcc Confidence 000111122223443332 100 00000000000000 0 Q ss_pred -------ccccceeeeccCCC--ccceeEEEEeccCC-CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee Q lcl|Aclame:pro 253 -------YSYSKHVPTDGNGN--PFKEIPFQFIGPLD-NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT 322 (535) Q Consensus 253 -------~~~~~~~~~~~~~~--~l~~IP~v~~~~~~-~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~ 322 (535) ..+........+.. |-+.+|||++.... .....-.--+.++.+.+..++...|-+.+++. +.-..... T Consensus 301 ~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~--~~~~~~~~ 378 (714) T protein:vir:32 301 RVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ--AKRVIMDE 378 (714) T ss_pred ccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhhc--CCceeeec Confidence 00000001111222 34568887653322 11111123456677778878777777777763 33333444 Q ss_pred CCCCccchhccCcceeeecCcccccCCCCCc-----cceeecCc-chh---HHHHHHHHHHHHHHHh-h--hhhcccccc Q lcl|Aclame:pro 323 GLTKDWVEDVFKDFKVHLGSRAIIPLPQGAT-----AGILQITP-NSV---PFEAMTHKESQMIAMG-A--NLLVKSGGN 390 (535) Q Consensus 323 G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~-----~~~~e~~~-~~l---~~~~l~~~e~qm~~lg-a--~~l~~~~~~ 390 (535) |....+++...+. +. =+++++.+-++.+ ...+++.+ ..+ ..+.|+...+.+..++ . .++... ++ T Consensus 379 ~a~~~~d~~~~e~--~a-rp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~-~n 454 (714) T protein:vir:32 379 DATQLSDNDLMEQ--IE-RPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQD-SG 454 (714) T ss_pred CcccccHHHHHHh--cc-CCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCC-cc Confidence 4333322221110 00 0123333321111 12223322 222 2355555555554443 2 233333 34 Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC--------CCc--eeEEEEecc---------- Q lcl|Aclame:pro 391 RTFGEA-QQEEASEQSILSACTKNVSMAF----RKALRWANQFQTGIV--------NDE--TVEYNLNTD---------- 445 (535) Q Consensus 391 ~ta~~a-~~~~~~~~S~L~~~a~~~~~a~----~~~lr~~a~~~g~~~--------~~~--~~~v~~n~d---------- 445 (535) .+++.+ .....+..-.|..+..|+..+. +.+|.++..|+...- ++. .-.+.+|.+ T Consensus 455 a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi 534 (714) T protein:vir:32 455 ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDI 534 (714) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccc Confidence 455543 2222333334455555555554 456667878775310 000 011222211 Q ss_pred ------cC------CccCCHHHHHHHHHHHhcCCCCHHHH---HH-HHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc Q lcl|Aclame:pro 446 ------FP------AARLTPNERAELILEWQQGAITFKEM---RA-GLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK 509 (535) Q Consensus 446 ------f~------~~~~d~~~~~al~~l~~~G~is~et~---~~-~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~ 509 (535) +. ....-.+.+.+|+++.+. ++-+.. .. .|.-.. --..++..++|.....-. . T Consensus 535 ~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d----~p~~~el~~~ir~~~~~~-~---- 603 (714) T protein:vir:32 535 SRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLD----VPQKQEFVERIRAALGTP-K---- 603 (714) T ss_pred eeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcC----CCCHHHHHHHHHHHcCCC-C---- Confidence 11 001114556677777754 222211 11 111111 123455666665432111 0 Q ss_pred CCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 510 VGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.+.-+.....+... ----..+.+ T Consensus 604 ~~~~~~~e~q~~~~~--~q~~~~~q~ 627 (714) T protein:vir:32 604 SPDEMTPEEQEVAAQ--QQALQQQQA 627 (714) T ss_pred CccccchhhHHHHHH--HHHHHHHHH Confidence 000000000000000 000000000 No 164 >protein:vir:10117 Length: 714 # NCBI annotation: hypothetical protein # Family: family:all:487 # MgeID: mge:180 # MgeName: Stx2 converting bacteriophage II # Cross-refs: genbank:acc:NP_859247;genbank:gi:32171003;genbank:GeneID:2653343 Probab=94.03 E-value=0.0056 Score=32.92 Aligned_cols=465 Identities=11% Similarity=0.021 Sum_probs=178.3 Q ss_pred CCCCCc--cCH-----HHHHHHHHHHHHHHHhcChHHHHHHHh---hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHH Q lcl|Aclame:pro 32 LPNVGY--QRV-----EFGEMLPKWRKIMDCLSGQEAIKAKRE---EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTAR 101 (535) Q Consensus 32 M~~v~~--~hp-----~y~~~~~~w~~i~d~~~G~~~~~~~g~---~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~ 101 (535) |.|=.. .|+ ........+..+...+.....+|+... .|. .+..-+++-...-+.+-...+.+|.+++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~a~~d~~fy---~G~Qw~~~~~~~l~~~g~p~~~~N~i~~ 77 (714) T protein:vir:10 1 MKNETNTMATKNDNGATPRFSQRQLQALCSDIDSQPKWRDAANKACAYY---DGDQLPPEVLQVLKDRGQPMTIHNLIAP 77 (714) T ss_pred CCcccccccCCCCcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh---cCCCCCHHHHHHHHhcCCCcEEeccHHH Confidence 553110 011 112222233333333444555654322 343 2333333333334444445666999999 Q ss_pred HHHHHhhhhhcccccccc-CH-----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCccc Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQL-PP-----------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPV 167 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~-p~-----------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~ 167 (535) +|+..+|.-=++.+.+.+ |. .|..+++.+- +-++.+.-...+|..++.+|.+|+=| |+.+.+. T Consensus 78 ~v~~v~g~~~~nr~~~~v~p~~~~~~~~~~Ae~l~~~~~~~~-~~~~~~~~~s~af~~~~~~G~G~~~~~~~~d~~~~-- 154 (714) T protein:vir:10 78 TVDGVLGMEAKTRTDLVVMSDEPDDETEKLAEAINAEFADAC-RLGNMNKARSDAYAEQIKAGLSWVEVRRNSDPFGP-- 154 (714) T ss_pred HHHHHHhHHHhCCcceEEecCCCCchhHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHhhhcCcceEEeccccCCCCC-- Confidence 999999999777666542 21 1222222211 12456777889999999999988544 3333222 Q ss_pred chHHHHhccCCcEEEEechhhhhcceee--ecCCccceeEEEEEEEEe---------e---------------------- Q lcl|Aclame:pro 168 TVLEQKLGLYRPTITLVHPTSIINWRTK--LVGGKSVISLVVIQENVL---------A---------------------- 214 (535) Q Consensus 168 t~ad~~~~~~rPy~~~~~~~~Ii~w~~~--~~~g~~~Lt~v~l~E~~~---------~---------------------- 214 (535) .+++..++|.+|+ |+-. ..+. ..--|+..+..+. + T Consensus 155 ----------~i~i~~v~p~~v~-~Dp~a~~~D~-sDar~~~~~~~~~~~~~~~~fP~~a~~i~~~~~~~~~~~d~~~~~ 222 (714) T protein:vir:10 155 ----------EFKVSTVSRNEVF-WDWLSREADL-SDCRWLMRRRWMDTDEAKATFPGMAQVIDYAIDDWRGFVDTTVTE 222 (714) T ss_pred ----------CeEEEecchhhee-eccccccCCh-hhccceeeeecCCHHHHHHhcCCchhhhhhhhhhhcccccccccc Confidence 2566666666653 3311 0000 0011111111000 0 Q ss_pred ------------------cCCCcccceeeEEEEEeecCCce-EEEEEEeeeccCCc-c---------------------- Q lcl|Aclame:pro 215 ------------------QDDGFETTYVQQWRVLQLNAEGN-YQVERWRRETQEEM-Y---------------------- 252 (535) Q Consensus 215 ------------------~~d~f~~~~~~~~rvl~l~~~g~-y~v~~w~~~~~~~~-~---------------------- 252 (535) ..+.|......++||.+. |.. +....+.....+.. . T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~v~E~--w~k~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~g~~~~~~~ 300 (714) T protein:vir:10 223 GQPSPLMSAWEEYQSWDRQQNEWLQRERRRVLLQVV--YYRTFERLPVIELSNGRVVAFDKNNLMQAVAVASGRVQVKVG 300 (714) T ss_pred ccccccccchhhhccccccccccccccccEEEEEEE--EEEEEEEEEeeccCCCceEEeCccCHHHHHHHhhcchhhhcc Confidence 000111122223443332 100 00000000000000 0 Q ss_pred -------ccccceeeeccCCC--ccceeEEEEeccCC-CcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee Q lcl|Aclame:pro 253 -------YSYSKHVPTDGNGN--PFKEIPFQFIGPLD-NNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT 322 (535) Q Consensus 253 -------~~~~~~~~~~~~~~--~l~~IP~v~~~~~~-~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~ 322 (535) ..+........+.. |-+.+|||++.... .....-.--+.++.+.+..++...|-+.+++. +.-..... T Consensus 301 ~~~rv~~~~~~g~~~L~~~~~p~p~~~fp~vp~~g~~~~~~g~~~G~vr~~~d~Qr~~N~~~s~~~~~l~--~~~~~~~~ 378 (714) T protein:vir:10 301 RVSRIREAWFVGPHFIVDRPCSAPQGMFPLVPFWGYRKDKTGEPYGLISRAIPAQDEVNFRRIKLTWLLQ--AKRVIMDE 378 (714) T ss_pred ccceEEEEEEecCcccccCCCCCCCCceeEEEEeeeeeeccCceeehhhhchhHHHHHHHHHHHHHHhhc--CCceeeec Confidence 00000001111222 34568887653322 11111123456677778878777777777763 33333444 Q ss_pred CCCCccchhccCcceeeecCcccccCCCCCc-----cceeecCc-chh---HHHHHHHHHHHHHHHh-h--hhhcccccc Q lcl|Aclame:pro 323 GLTKDWVEDVFKDFKVHLGSRAIIPLPQGAT-----AGILQITP-NSV---PFEAMTHKESQMIAMG-A--NLLVKSGGN 390 (535) Q Consensus 323 G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~-----~~~~e~~~-~~l---~~~~l~~~e~qm~~lg-a--~~l~~~~~~ 390 (535) |....+++...+. +. =+++++.+-++.+ ...+++.+ ..+ ..+.|+...+.+..++ . .++... ++ T Consensus 379 ~a~~~~d~~~~e~--~a-rp~~vi~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGv~~~~lG~~-~n 454 (714) T protein:vir:10 379 DATQLSDNDLMEQ--IE-RPDGIIKLNPVRKNQKSVADVFRVEQDFQVASQQFQVMQESEKLIQDTMGVYSAFLGQD-SG 454 (714) T ss_pred CcccccHHHHHHh--cc-CCCCceeecccccccCCCCccccccCCCCccHHHHHHHHHHHHHHHHhhCCChHHcCCC-cc Confidence 4333322221110 00 0123333321111 12223322 222 2355555555554443 2 233333 34 Q ss_pred cchHHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC--------CCc--eeEEEEecc---------- Q lcl|Aclame:pro 391 RTFGEA-QQEEASEQSILSACTKNVSMAF----RKALRWANQFQTGIV--------NDE--TVEYNLNTD---------- 445 (535) Q Consensus 391 ~ta~~a-~~~~~~~~S~L~~~a~~~~~a~----~~~lr~~a~~~g~~~--------~~~--~~~v~~n~d---------- 445 (535) .+++.+ .....+..-.|..+..|+..+. +.+|.++..|+...- ++. .-.+.+|.+ T Consensus 455 a~SGvAi~~rq~qg~~~l~~~~Dnl~~~~~~~g~~lL~li~~~~~~erv~RI~~e~~~~~~~~~v~in~~~~~~~~~nDi 534 (714) T protein:vir:10 455 ATSGVAISNLVEQGATTLAEINDNYQFACQQVGRLLLAYLLDDLKKRRNHAVVINRDDRQRRQTIVLNAEGDNGELTNDI 534 (714) T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEeccCCCcCcceEEeeccccCcceecccc Confidence 455543 2222333334455555555554 456667878775310 000 011222211 Q ss_pred ------cC------CccCCHHHHHHHHHHHhcCCCCHHHH---HH-HHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc Q lcl|Aclame:pro 446 ------FP------AARLTPNERAELILEWQQGAITFKEM---RA-GLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK 509 (535) Q Consensus 446 ------f~------~~~~d~~~~~al~~l~~~G~is~et~---~~-~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~ 509 (535) +. ....-.+.+.+|+++.+. ++-+.. .. .|.-.. --..++..++|.....-. . T Consensus 535 ~~~~~Dv~i~~~p~~~t~r~~~~~~l~~l~~~--~~p~~~~~~~~~~l~~~d----~p~~~el~~~ir~~~~~~-~---- 603 (714) T protein:vir:10 535 SRLNTHIALAPVQQTPAFKAQLAQRMSEVIQG--LPPQVQAVVLDLWVNLLD----VPQKQEFVERIRAALGTP-K---- 603 (714) T ss_pred eeeeEEEEEeeccCchHHHHHHHHHHHHHHhh--cCchhhhhHHHHHHHhcC----CCCHHHHHHHHHHHcCCC-C---- Confidence 11 001114556677777754 222211 11 111111 123455666665432111 0 Q ss_pred CCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 510 VGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +.+.-+.....+... ----..+.+ T Consensus 604 ~~~~~~~e~q~~~~~--~q~~~~~q~ 627 (714) T protein:vir:10 604 SPDEMTPEEQEVAAQ--QQALQQQQA 627 (714) T ss_pred CccccchhhHHHHHH--HHHHHHHHH Confidence 000000000000000 000000000 No 165 >protein:vir:80211 Length: 514 # NCBI annotation: putative head-tail connector protein # Family: family:all:481 # MgeID: mge:1879 # MgeName: LKA1 # Cross-refs: genbank:acc:YP_001522882;genbank:gi:158345175;genbank:GeneID:5687474 Probab=93.57 E-value=0.0071 Score=32.37 Aligned_cols=430 Identities=10% Similarity=0.048 Sum_probs=159.2 Q ss_pred CCCCCccCHHHH------HHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH- Q lcl|Aclame:pro 32 LPNVGYQRVEFG------EMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD- 104 (535) Q Consensus 32 M~~v~~~hp~y~------~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~- 104 (535) |- .++...- ...++|+-|.+. .||..-.+..+..+.. .++.+ .|=+...+.++ T Consensus 1 m~---~~~~~l~~k~~R~~~e~~w~e~a~~-------------~lP~~~~~~~~~~~~~---~~~~~-~~dstg~~a~~~ 60 (514) T protein:vir:80 1 MR---QQASAMWAEYRDSTAIRKAEDFAKF-------------TIASLMVDPLDKTHQA---EVVEY-DFQSAGAFLVNN 60 (514) T ss_pred Cc---cchHHHHHHhhcchHHHHHHHHHHH-------------hcccccCCCCCCcccc---ccccc-ccchhHHHHHHH Confidence 44 3333321 134455444444 4563211111110000 11111 12222234444 Q ss_pred ---HHhhhhhcc-cc--ccccCH--------------HHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEE Q lcl|Aclame:pro 105 ---GMMGQVFSR-DP--IRQLPP--------------ALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFT 158 (535) Q Consensus 105 ---~l~G~lF~k-~p--~~~~p~--------------~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlV 158 (535) +|.+.+|.- .| .+.+.+ .++.+++.|+. ..++++.-+..+..+...+|.+.+++ T Consensus 61 LAa~l~~~ltpp~~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~L~~~G~a~l~~ 140 (514) T protein:vir:80 61 LTAKLALTLFPPGRPSFQIELDDTLQELAAANGIDQSELHSRTADLERRATRRLFVNASLSKLHRILKLLVVTGNALFYR 140 (514) T ss_pred HHHHHHhhhcCCCCcccccccCchhhhhccccchhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHCeEEEEE Confidence 444444431 11 111111 13334333322 34678888889999999999999988 Q ss_pred eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecC--CCc------------cccee Q lcl|Aclame:pro 159 DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQD--DGF------------ETTYV 224 (535) Q Consensus 159 D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~--d~f------------~~~~~ 224 (535) | |..+ + +..|+-.+. -.... +.+.+.-|+.|+.+..+. .+| ....+ T Consensus 141 ~-~~~~--------------~-~~~~pl~~y---~v~~d-~~G~v~~i~rr~~~~~~~l~~~~~~~~~~~~~~~~~~~~v 200 (514) T protein:vir:80 141 E-PGTG--------------K-MLVWTMQSY---TVRRT-SHGDPAVVVLRQQMPFRELTPEIQADAQAKQIAKRDSDKC 200 (514) T ss_pred e-cCCC--------------c-EEEEEcCeE---EEeeC-CCcCeEEEEeeeeecHHHhhhhhhhhhhhhhccCCCCCce Confidence 6 2211 1 344554442 22222 223343455666443221 111 11122 Q ss_pred eEEEEEee--cCCceEEEEEEeeeccCCccccccceeeeccCCCc---cceeEEEEeccCCCcCCCCcchHHHHHHHHHH Q lcl|Aclame:pro 225 QQWRVLQL--NAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNP---FKEIPFQFIGPLDNNADIDHPPLLDLCEVNIG 299 (535) Q Consensus 225 ~~~rvl~l--~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~---l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~ 299 (535) +.|-+..+ +..+.+ ..+|. +.++ ..+ ...++-+ +.+||+.|.... +...|.+|-.+-..=... T Consensus 201 ~v~~~v~~~~~~~~~~-~sv~~-e~~g-------~~i-~~es~y~~~e~P~i~~Rw~~~~--ge~YGrgp~~~al~D~k~ 268 (514) T protein:vir:80 201 DLYTVIEWQPTPNGKR-CAVWH-ELEG-------KRV-GPESSYPAHLCPYVPVAWNVPD--GEHYGRGYVEEYSGDFAR 268 (514) T ss_pred EEEEEEEeecCCCCeE-EEEEE-eccc-------eee-cccCccccccCCeeeeeeEecC--CCCcccchHHHHHHHHHH Confidence 22222222 222211 12221 1111 111 2223333 445555554333 344566664433222222 Q ss_pred HHhhHHHHHHHHHHhcCceeEee--CCCCccchhccCcceeeecCcccccCCCCCccceeecCc-chhH--HHHHHHHHH Q lcl|Aclame:pro 300 HYRNSADYEEMAFVAGQPTAFFT--GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITP-NSVP--FEAMTHKES 374 (535) Q Consensus 300 hy~~~sdl~~~l~~~~~P~~~~~--G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~-~~l~--~~~l~~~e~ 374 (535) +...+-.+-...+.+..|...+. |. +.+..+.-|.+..+.-......+.++... ..+. .+.++++++ T Consensus 269 L~~l~~~~l~~~~~a~~~~~~v~~~g~--------~~~~~l~~~~~g~~v~g~~~~v~~~~~~~~~d~~~~~~~i~~~~~ 340 (514) T protein:vir:80 269 LSILSERLGLYEFEALSLLNLVDEAKG--------GAVDDYRDAETGDFVPGQVGSVASYERGDYNKIAQASASVESIVM 340 (514) T ss_pred HHHHHHHHHHHHHHhcCCCceeCcccc--------cchhhhcccCCceeecCCCccceeeecCcccchHHHHHHHHHHHH Confidence 22333334444455555554432 22 12223344443333211223455666542 3343 467888888 Q ss_pred HHHHH--hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHc-CCC--CCCceeEEEEec Q lcl|Aclame:pro 375 QMIAM--GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSM-----AFRKALRWANQFQ-TGI--VNDETVEYNLNT 444 (535) Q Consensus 375 qm~~l--ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~-----a~~~~lr~~a~~~-g~~--~~~~~~~v~~n~ 444 (535) ++... ....+ .+....||++...+..--...|.-.-.++.. .+.+++.++-+-. |.. ...+.+++++-. T Consensus 341 rI~~aFml~~~~-rd~~rvTAtEV~~r~~E~~~~LGpv~~rl~~Ell~Pli~r~~~il~r~~~g~lP~~p~~l~~~~~vs 419 (514) T protein:vir:80 341 RLNRAFMYTGQV-RDAERVTVEEIRTVAEEAENLLGGVYSLLAETLQAPLAYLTMYEASRGNGGMLLGIAQGVYRPSIIT 419 (514) T ss_pred HHHHHHhhhccC-CCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCchhhcceeee Confidence 87542 11122 3445579999887665444444444444332 2334444443221 211 111222222211 Q ss_pred --ccCCccCCHHHHHHHHHHHhc---------CCCCHHHHHHHH-HhCCCCCc-cCCHHHHHHHHHhc----hhhcccCC Q lcl|Aclame:pro 445 --DFPAARLTPNERAELILEWQQ---------GAITFKEMRAGL-RRAGVASE-DDAKAETEGKATVE----FIAKTAAA 507 (535) Q Consensus 445 --df~~~~~d~~~~~al~~l~~~---------G~is~et~~~~L-~r~gvl~~-~~~~eee~~~i~~e----~~~~~~~~ 507 (535) .......+.+.+...+..++. ..|..+.+.+.+ ...||-.. -...+|+....+++ ...+-.. T Consensus 420 ~la~l~r~~~~~~l~~~~~~i~~l~~~~p~v~d~id~d~~~~~~a~~~Gvp~~~i~~~~e~~~~~~~~~~~~~~~~~~~- 498 (514) T protein:vir:80 420 GIPALTRNIETANILRATQEASAIVPALVQLSKRFDPEKLVERIFANNSVDLSTLSKDPDVVAAEAEQEAALAQQQLDV- 498 (514) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhcCCHHHHHHHHHHHhCCCHhhccCCHHHHHHHHHHHHHHHHHHHHH- Confidence 111111122222222222211 123344444443 44565322 22233322211111 1111000 Q ss_pred CcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 508 GKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) .+.+..+..+- |--|. T Consensus 499 ~~~~~~~~~~~---------~~~~~ 514 (514) T protein:vir:80 499 ASGALAAETSA---------GVLTS 514 (514) T ss_pred HHHHHHHhhhc---------cccCC Confidence 00000000000 00000 No 166 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=93.56 E-value=0.0071 Score=32.35 Aligned_cols=388 Identities=14% Similarity=0.131 Sum_probs=150.6 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |.--..-.++-...+ ...+.+|+.... ..|. +.| .+. T Consensus 1 Mgl~~~~f~~~~~~~-----~~~~~~~~~~~~--------------~~~~-----~~g---------~~v---------- 37 (409) T protein:vir:84 1 MSLFTRIFSGPSEER-----TLTKISGIPSPA--------------EDWA-----MHG---------DRP---------- 37 (409) T ss_pred CchhhhhhcCCCccc-----cccccccccccc--------------chhh-----ccC---------ccc---------- Confidence 221110011100000 000111110000 0000 001 000 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---ccccccc-CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEE Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDPIRQL-PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAI 156 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p~~~~-p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~v 156 (535) .++..++.+..+-.+..+-+.++++.|. +.-.... ...+..++..-=....+-.+|.+.+....+.+|-+|+ T Consensus 38 ----~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~ 113 (409) T protein:vir:84 38 ----GANSAMTLGAFYACVTLLADTVASLSIDAYRKKDNVRIPVSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFG 113 (409) T ss_pred ----chhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEE Confidence 0222233333344445555555555443 1111111 1234444433233678899999999999999999999 Q ss_pred EEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCC Q lcl|Aclame:pro 157 FTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAE 235 (535) Q Consensus 157 lVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~ 235 (535) ++.....++ +| -+..++|..| .+ ....+.+ T Consensus 114 ~i~~~~~~g------------~~~~L~~l~p~~v-----------------~v----~~~~~~~---------------- 144 (409) T protein:vir:84 114 YISARDEAN------------RPTAIMPIHPDCI-----------------HV----TDAKDED---------------- 144 (409) T ss_pred EEEEECCCC------------ceEEEEEEcCcee-----------------EE----EEcCCCc---------------- Confidence 886433221 12 3445555443 11 0001111 Q ss_pred ceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHH Q lcl|Aclame:pro 236 GNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFV 313 (535) Q Consensus 236 g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~ 313 (535) +.+....|... +. .++.+ . ++++ +....+...|.+|+.-+... +.......++... ... T Consensus 145 ~~~~~~~~~~~--g~-------~~~~~------d---vih~~~~~~~~~~~G~s~i~~~~~~-i~~~~~~~~~~~~~f~n 205 (409) T protein:vir:84 145 GDWIEPVYRID--GK-------VVPNH------R---IMHIKRYPVAGCALGMSPIEKAASA-IGLGLAAERYGLRWFRD 205 (409) T ss_pred ceEEEEEecCC--ce-------EEchh------h---EEEecCCCCCcccccccHHHHHHHH-HHHHHHHHHHHHHHHhc Confidence 11111111110 00 00100 0 1222 12223344678888755543 3333333334333 344 Q ss_pred hcCceeEeeCCCCccch--hccCc--ceeeecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhc Q lcl|Aclame:pro 314 AGQPTAFFTGLTKDWVE--DVFKD--FKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLV 385 (535) Q Consensus 314 ~~~P~~~~~G~~~~~~~--d~~~~--~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~ 385 (535) .+.|-.+++.-..-..+ +.... ....-++...+.++.+.++.-+..++..... +..+....+++. +...++. T Consensus 206 g~~p~gil~~~~~l~~e~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg 285 (409) T protein:vir:84 206 SANPSGILSSDADLTPDQVKQTQKQWIQSHHNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIG 285 (409) T ss_pred CCCccEEEecCCCCCHHHHHHHHHHHHHHhccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhC Confidence 56787777632111111 00000 0111244456668877766655555544332 333333344433 3444443 Q ss_pred ccccccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHH Q lcl|Aclame:pro 386 KSGGNRTFGEAQQEEA---SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILE 462 (535) Q Consensus 386 ~~~~~~ta~~a~~~~~---~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l 462 (535) ... ..+...+.++.. --...|.-++..+++++++.| . .+-. |+.+.+=.........+.++-++ T Consensus 286 ~~~-~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L-------~---~g~~--i~fd~~~l~~~d~~~~~~~~~~~ 352 (409) T protein:vir:84 286 DVE-KSTSWGTGIEEQGINFVRHTLLPWLRCIEQALDTFL-------P---RGQF--VKFNVDGLMRGDVTARFTAYQMG 352 (409) T ss_pred CCC-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------c---CCCe--EEEechhhhccCHHHHHHHHHHH Confidence 211 112111222221 124446666777777776543 1 1222 33333222222234556778889 Q ss_pred HhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCC--CCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 463 WQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGD--AASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 463 ~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +++|.++.-++++.+ |+ ++...-++.. . +.+..+.+ +..+...+ ....+.+-|| T Consensus 353 ~~~G~~t~NE~R~~~---g~-~p~~ggD~~~-------~---~~n~~~~~~~~~~~~~~~-----~~~~~~~~gn 408 (409) T protein:vir:84 353 LQNGIWSVNEVRAWE---DA-PPIPEGDIHL-------Q---PMNFVPLGYVPPEEPAQE-----PQPNSATEGN 408 (409) T ss_pred HhCCCcCHHHHHHHh---CC-CCCCCcceee-------e---cccccccccCCccccCcC-----CCCCCccCCC Confidence 999999988877654 32 2211111100 0 00111100 00111111 1112222233 No 167 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=93.54 E-value=0.0072 Score=32.33 Aligned_cols=436 Identities=10% Similarity=0.016 Sum_probs=166.4 Q ss_pred CCCCCcc----CHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh Q lcl|Aclame:pro 32 LPNVGYQ----RVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM 107 (535) Q Consensus 32 M~~v~~~----hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~ 107 (535) |++.+.+ .|...+-. ...|+ +.....|+..+..+-.-...-+-|+.-+. -.++...++... T Consensus 1 ~~~~~~~~~gl~p~rl~~i--------~~~~~---~~~~~~~~~~~~~~Lr~~~~~~ly~~m~~----D~hi~s~l~~Rk 65 (488) T protein:vir:95 1 MADITETQESLPPFRMGEV--------GSLGL---KVKNGRIYEEPRQALRFPESIKTFQLMMR----DPAVAASVNIIK 65 (488) T ss_pred CCCccccCCCCCHHHHHHH--------HHHhh---ccccchhhccchhhhcccchHHHHHHHhh----ChHHHHHHHHHH Confidence 6654432 23222211 11121 11223344322111011123345666542 367777777777 Q ss_pred hhhhcccccccc----CHH-----HHHHHhccCCC-CCCHHHHHHHHHHHHHhhCcEEE-EEeecCCCcccchHHHHhcc Q lcl|Aclame:pro 108 GQVFSRDPIRQL----PPA-----LEAIVEDIDGE-GVSLDQQAKKALGYTMGFGRAAI-FTDYPNVGRPVTVLEQKLGL 176 (535) Q Consensus 108 G~lF~k~p~~~~----p~~-----l~~l~~d~d~~-G~~L~~~~~~~~~~~l~~G~~~v-lVD~p~~~~~~t~ad~~~~~ 176 (535) ..|...++.+.- ++. ...+++.+-.. -.++..++..++ .++.+|.+.+ +||.+..+.. T Consensus 66 ~av~~~~w~v~p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~---------- 134 (488) T protein:vir:95 66 MFVRKVNWRFVPPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKK---------- 134 (488) T ss_pred HHHhcCCceEecCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-Hhhcccceeeeeeeecccccc---------- Confidence 777777777742 211 11233322222 245788888886 5788887766 4443322210 Q ss_pred CCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccccc Q lcl|Aclame:pro 177 YRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYS 256 (535) Q Consensus 177 ~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~ 256 (535) +++...| .+|+-.+..+..|-.. .-..| ..+.++.-++... .. ......... T Consensus 135 -~~~~~~~------------~dg~~~~~~i~~Rpq~--~~~~f-----------~~d~d~~l~~~~~-~~-~~~~~~~~~ 186 (488) T protein:vir:95 135 -GKYQSKF------------DDGLIGWAKLPIRNQS--TLDKW-----------YFDEDFRRVTGVR-QN-LRNVSHIAG 186 (488) T ss_pred -ccccccc------------cCCeeeeeeeeecCcc--cccce-----------eeccCCCceeecc-cc-ccccccccc Confidence 0111110 1111111111110000 00000 0000110000000 00 000000000 Q ss_pred ceeeeccCC-CccceeE---EE-EeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCC----c Q lcl|Aclame:pro 257 KHVPTDGNG-NPFKEIP---FQ-FIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTK----D 327 (535) Q Consensus 257 ~~~~~~~~~-~~l~~IP---~v-~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~----~ 327 (535) ....+. ..=..|| |+ +.+....+...+...|.-++..-+---....+...-++.-+.|+++..|... + T Consensus 187 ---~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~ 263 (488) T protein:vir:95 187 ---AINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPWKYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDEN 263 (488) T ss_pred ---ccccccccccccccccceEEEeecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeEeeccCCCCCc Confidence 000000 0001244 23 2233333444455555555443322112233333334444678888887421 1 Q ss_pred cchhc--cCc------ceeeecCcccccCCCCCccce---------eecCcchhH-H-HHHHHHHHHHHH-Hhhhhhccc Q lcl|Aclame:pro 328 WVEDV--FKD------FKVHLGSRAIIPLPQGATAGI---------LQITPNSVP-F-EAMTHKESQMIA-MGANLLVKS 387 (535) Q Consensus 328 ~~~d~--~~~------~~i~iG~~~~~~lp~~~~~~~---------~e~~~~~l~-~-~~l~~~e~qm~~-lga~~l~~~ 387 (535) ..++. .-. ..+..|..+.+.+|.+....+ +...+.+.. . ..++...++|.. +-++++..+ T Consensus 264 ~~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~ 343 (488) T protein:vir:95 264 AEPEKKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMG 343 (488) T ss_pred ccHHHHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccCCchhHHHHHHHHHHHHHHHHhccccccc Confidence 11111 000 112234556666776654332 233333222 2 344555555533 233333322 Q ss_pred ccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhc Q lcl|Aclame:pro 388 GGN-RTFGEAQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQ 465 (535) Q Consensus 388 ~~~-~ta~~a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~ 465 (535) .+. .+-..+..........+.+-+..+.++++ +++++++.|-... ......|++... ...++ ...+.++.+|++. T Consensus 344 ~~~~Gs~Al~~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~~Nfg~-~~~~P~~~~~~~-e~~Dl-~~~ae~~~~L~~~ 420 (488) T protein:vir:95 344 QSKYGSFSLADSKTSLLAMSVDILLKQIKNVINRDLVAQTYALNMWD-DEEHVQITYDDI-ETPDL-EAIGSYIQKTVAV 420 (488) T ss_pred cCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCccEEEecCc-ChhhH-HHHHHHHHHHHhC Confidence 221 22223344455557778888999999997 5899888876321 222233442211 11111 2345567778888 Q ss_pred CCC-CHHHHHHHHH-hCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 466 GAI-TFKEMRAGLR-RAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 466 G~i-s~et~~~~L~-r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) |.+ +.....++++ +.||-.+. ..+++.... .+...+..++...+..+.+. +.-+.-.+...| T Consensus 421 G~~i~~~~~~~~i~e~~gip~~~-~~e~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~ 484 (488) T protein:vir:95 421 GALEVDKELSNKLREHIGLPPAD-ESQPVSEKL------SPNSQSRSGDGYKTAGEGTA-KTPSAKDPSTAN 484 (488) T ss_pred CCccccHHHHHHHHHHhCCCCCC-CCccccccC------CCCCCCCCCcccCCCcccCC-cccccccchhhh Confidence 885 4333334443 45653222 222221111 01111111111111111111 111111122222 No 168 >protein:vir:105520 Length: 706 # NCBI annotation: phage portal protein # Family: family:all:487 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516189;genbank:gi:89885992;genbank:GeneID:3964380 Probab=93.50 E-value=0.0073 Score=32.29 Aligned_cols=481 Identities=9% Similarity=-0.003 Sum_probs=176.8 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhhCCCCCCCCCChhhHHHHHHHHh----hhccchhHHHHHH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEYLPMPSVDSRDEEQRRRYETYLQ----RAIFYNVTARTLD 104 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~YLP~~~~~~~~~E~~~~Y~~rl~----rA~~~n~~~~tv~ 104 (535) |++ ++-+.. ...+..++.+......+++.. ..|. .-.+..-+.+..+..+.+-+ -.+.+|.++.+|+ T Consensus 1 m~e---~~~~~~--~~~~~~~~~~~~~~~~~r~~~~~d~~f~-~~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i~~~v~ 74 (706) T protein:vir:10 1 MAE---SRQKQH--ERVMLRFDRAWSPQQVVREKCIEATRFV-RVPGGQWEGATVAGTKLDEQFEKYPKFEINKVATELN 74 (706) T ss_pred CCc---chHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCccCCHHHHHHHHhhhhhcCCCceEecchHHHHH Confidence 886 233222 223344444444444444332 2233 11122233333333333322 2566899999999 Q ss_pred HHhhhhhcccccccc-C----------HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccchHH Q lcl|Aclame:pro 105 GMMGQVFSRDPIRQL-P----------PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTVLE 171 (535) Q Consensus 105 ~l~G~lF~k~p~~~~-p----------~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ad 171 (535) ..+|.--++.+.+.+ | +.+..+++.+- +-++.+.-...++..++.+|.+|+=| ||.....+.+.- T Consensus 75 ~v~g~~~~nr~~~~v~P~~~~~d~~~Ae~l~~l~~~~~-~~~~~~~a~s~Af~d~i~~G~G~~ev~~d~~~~~d~~~~~- 152 (706) T protein:vir:10 75 RIISEYRNNRISVKFRPGDNAASEELANKLNGLFRADY-EETDGGEACDNAFDDAATGGFGCFRLTTSFVNEYDPMDER- 152 (706) T ss_pred HHhhHHHhCCCceEEecCCCCchHHHHHHHHHHHHHHH-HhcCchHHHHHHHHHHhhcCcceEEeeeccccccCCCCCC- Confidence 999998777666542 2 11233333331 22467777899999999999999644 543322211110 Q ss_pred HHhccCCcEE-EEechh-hh-hcceeeecCCccceeEEEEEEE---------EeecC-------------CC-------- Q lcl|Aclame:pro 172 QKLGLYRPTI-TLVHPT-SI-INWRTKLVGGKSVISLVVIQEN---------VLAQD-------------DG-------- 218 (535) Q Consensus 172 ~~~~~~rPy~-~~~~~~-~I-i~w~~~~~~g~~~Lt~v~l~E~---------~~~~~-------------d~-------- 218 (535) -++-+ ..+.|- .| +||.....+... -.|+..+.. +.+.. +. T Consensus 153 -----~~i~i~~v~~p~~~v~~Dp~a~~~D~sD-ar~~~~~~~~~~d~~~~~fp~~~~~~~~~~~~~~~~d~~~~d~~~~ 226 (706) T protein:vir:10 153 -----QRIAVEPIYDPARSVWFDPDAKKYDKSD-ALWAFCMYSVSLEKYQSEYDKAPTSLDRVGSVSWQYDWFTPDVVYI 226 (706) T ss_pred -----ccceeeeeccchhceecCchhcccChhh-cceEeeeecCCHHHHHHhcCCChhhhhhhccccccccccCCCccee Confidence 01111 122332 33 344322222110 001111100 00000 00 Q ss_pred ---cccceeeEEEEEeecCCceEEEEEEeeeccCCccc------------------------cccceeeeccCCCcccee Q lcl|Aclame:pro 219 ---FETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYY------------------------SYSKHVPTDGNGNPFKEI 271 (535) Q Consensus 219 ---f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~I 271 (535) |....+....++.. .+..-.+..|..+....... ..+..+..+...-+.+.+ T Consensus 227 ~eyy~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~~g~~~l~~~~p~~~~~~ 305 (706) T protein:vir:10 227 AKYYEVRKESVDVISYR-QPLTQEIATYDSEQIADIQDELEQAGFEEIGRRSVKRRRIYVAVVDGDGFLEKPRRIPGEHI 305 (706) T ss_pred cccccccceeEEEEEee-ccccCCceeeccchhhhhHHHHhhCCchhhhhcccceeeEEEEeeccccccccCCCCCCCcc Confidence 00000000001100 00000011111100000000 000011111122344888 Q ss_pred EEEEeccCCC-cCCCC--cchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCC------ccchhccC-ccee--- Q lcl|Aclame:pro 272 PFQFIGPLDN-NADID--HPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTK------DWVEDVFK-DFKV--- 338 (535) Q Consensus 272 P~v~~~~~~~-~~~~~--~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~------~~~~d~~~-~~~i--- 338 (535) |||+|...+. ....+ .--+.++.+.+..++...|-+.+++-.++.-..+.. +++ .|...... ...+ T Consensus 306 P~vP~~g~r~~~d~~~~~~G~vr~~~d~Q~~~N~~~s~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~l~~~ 384 (706) T protein:vir:10 306 PLIPVYGKRWFIDDVERVEGHIAKAMDPQRLYNLQVSMLADAAAQDPGQTPIVD-MEQIRGLEQHWEGRNRKRPAFLPLR 384 (706) T ss_pred ceEEEeeccccccccCcccceeccchhhHHHHHHHHHHHHHHHHhcCCcccccc-hhHHHHHHHHhhhcccccccchhcc Confidence 8887643322 11111 223567788888888777777776643333222221 111 11100000 0000 Q ss_pred eecCcccccCCCCCccceeecCcc-hhHHHHHHHHHHHHHHHh---hhhhcccccccchHHH-HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 339 HLGSRAIIPLPQGATAGILQITPN-SVPFEAMTHKESQMIAMG---ANLLVKSGGNRTFGEA-QQEEASEQSILSACTKN 413 (535) Q Consensus 339 ~iG~~~~~~lp~~~~~~~~e~~~~-~l~~~~l~~~e~qm~~lg---a~~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~ 413 (535) .+|.......+....+++.++..- ....+.|+.....|..++ ..++...+ + +++.+ .....+..-.|..+-.| T Consensus 385 ~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~vsGi~~~~lG~~s-n-~SG~Ai~~rq~qg~~~~~~~~Dn 462 (706) T protein:vir:10 385 TVTDKTGNVVAPANVAGYTQAPVLNQALAALLQQTSADIQEVTGSSQAMQQMPS-N-VARETVNSLLNRSDMASFIYLDN 462 (706) T ss_pred cccCCCCcccccccccccCCCcchHHHHHHHHHHHHHHHHHHhCCCHHHcCCcc-c-hHHHHHHHHHHHHHHHHHHHHHH Confidence 223322222222234444443221 111234444444444432 22333323 3 34433 33333333335666666 Q ss_pred HHHHHHHH----HHHHHHHcCCC-------CCCceeEEEEe---------------------------cccCCccCCHHH Q lcl|Aclame:pro 414 VSMAFRKA----LRWANQFQTGI-------VNDETVEYNLN---------------------------TDFPAARLTPNE 455 (535) Q Consensus 414 ~~~a~~~~----lr~~a~~~g~~-------~~~~~~~v~~n---------------------------~df~~~~~d~~~ 455 (535) +..+..++ |.++..|+... .++..-.+.+| .-........+. T Consensus 463 l~~~~~~~g~~lL~li~~~y~~~R~~RI~~ed~~~~~v~in~~~~d~~~G~~~~~nDi~~g~yDv~i~~~p~~~t~r~~~ 542 (706) T protein:vir:10 463 MAKSLKRAGEIWLSMAREIYGSDREVRIVHEDGTDDIALMNAAVLDNQTGRVVALNDLSTGRYDVSVDVGPSYSARRDAT 542 (706) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCccceeeccceeccccCceeeeecceeeeEEEEEecccCcchHHHHH Confidence 66666654 77888887431 00110011111 111112223455 Q ss_pred HHHHHHHHhcCCCCH-HH--HHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 456 RAELILEWQQGAITF-KE--MRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 456 ~~al~~l~~~G~is~-et--~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) +.+++++.+++.-.. .+ +...+-. .+ +.--.+|..+++......+....+. ++.......+.+.-...-... T Consensus 543 ~~~m~el~~~~~p~~~~~~~l~~~~~~--~~-d~p~~~e~~e~irk~~~~q~~~~~~--~~~eq~~~~q~qq~q~~q~~~ 617 (706) T protein:vir:10 543 VNALTQLLQGMLPQDPMRPALMGIIID--NM-EGEGLDDFKAFNRRQLLTQGIVKPR--NQQEQAIVQQAQQAQATQPDP 617 (706) T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHh--hc-CccchHHHHHHHHHhhcccCCcccc--chhHHHHHHHHHHHHHHHHHH Confidence 667777777643211 11 1111111 11 1112355555665443222111111 000000000000000000000 Q ss_pred CCC Q lcl|Aclame:pro 533 AGN 535 (535) Q Consensus 533 ~~~ 535 (535) +-+ T Consensus 618 ~~~ 620 (706) T protein:vir:10 618 NML 620 (706) T ss_pred HHH Confidence 000 No 169 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=93.48 E-value=0.0074 Score=32.27 Aligned_cols=424 Identities=10% Similarity=0.020 Sum_probs=172.5 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCC--CCccCHHHHHHHHHHHHH-HHHhcChHHHHHHHhhhCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPN--VGYQRVEFGEMLPKWRKI-MDCLSGQEAIKAKREEYLPMPSVDS 77 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~--v~~~hp~y~~~~~~w~~i-~d~~~G~~~~~~~g~~YLP~~~~~~ 77 (535) |++---.-=|-+....+.-|+.+-.+|+.--+++ .+.-.|. +|..| +..-.|. +.+. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~------~l~~iL~~a~~gd--~~~~------------ 60 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPN------RAAQMLRDAERGD--LTAQ------------ 60 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHH------HHHHHHHHhhCCC--HHHH------------ Confidence 5443221112222222222333333333221111 1111122 22211 1111221 1100 Q ss_pred CChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccC----H---H----HHHHHhccCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 78 RDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLP----P---A----LEAIVEDIDGEGVSLDQQAKKALG 146 (535) Q Consensus 78 ~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p----~---~----l~~l~~d~d~~G~~L~~~~~~~~~ 146 (535) -+-|.....| -.++...++..-..|...++.|+.+ + . ++.++.+. -+++.++..++. T Consensus 61 -----~~L~~dm~~~---D~hi~s~l~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~----~~f~~~~~~lld 128 (512) T protein:vir:19 61 -----ADLAFDMEEK---DTHLFSELSKRRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDA----AWFEDALFDAGD 128 (512) T ss_pred -----HHHHHHHHhh---ChHHHHHHHHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcC----CCHHHHHHHHHh Confidence 0112222222 3556666666666666667666422 1 1 22233321 147888877764 Q ss_pred HHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeE Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQ 226 (535) Q Consensus 147 ~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~ 226 (535) ++.+|.+.+=+- |+.+ +|.-.+..+..+. ...|. T Consensus 129 -A~~~G~s~~Ei~--------------------------------w~~~--~g~~~~~~~~~r~-----~~~f~------ 162 (512) T protein:vir:19 129 -AILKGYSMQEIE--------------------------------WGWL--GKMRVPVALHHRD-----PALFC------ 162 (512) T ss_pred -hhhhcceeeeeE--------------------------------eeee--CCceeeeeeeeec-----cccce------ Confidence 667776554332 3221 2222222111111 01110 Q ss_pred EEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 227 WRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 227 ~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) .+.++..+++ .+. .. ....+. .+.+ |+++ +....+...+...|.-++..-+--..... T Consensus 163 -----~~~~~~~~lr-~~~---~~-----~~G~~l----~~~k---~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~ 221 (512) T protein:vir:19 163 -----ANPDNLNELR-LRD---AS-----YHGLEL----QPFG---WFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVR 221 (512) T ss_pred -----eccCCCcEEE-ecC---CC-----CCceee----cCCc---eEEEeccCCCCCcccccHHHHHHHHHHHHHHHHH Confidence 0011111111 010 00 000000 1122 2222 22333445556666666655554445666 Q ss_pred HHHHHHHHhcCceeEeeCCCCccchh--ccCcceeeecCcccccCCCCCccceeecCcchhH-H-HHHHHHHHHHHH--H Q lcl|Aclame:pro 306 DYEEMAFVAGQPTAFFTGLTKDWVED--VFKDFKVHLGSRAIIPLPQGATAGILQITPNSVP-F-EAMTHKESQMIA--M 379 (535) Q Consensus 306 dl~~~l~~~~~P~~~~~G~~~~~~~d--~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~-~~l~~~e~qm~~--l 379 (535) +...-++.-|.|+++.+--.....++ .+...-..+|+.++..+|.+....|++..+.+.. + ..++...++|.. + T Consensus 222 ~w~~f~E~yG~P~~igky~~~a~~~ek~~L~~al~~~~~~a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~iL 301 (512) T protein:vir:19 222 DFAEFLEIYGLPMRVGKYPTGSTNREKATLMQAVMDIGRRAGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAIL 301 (512) T ss_pred HHHHHHHHcCCCeeEEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHHh Confidence 77777888899998887433222222 2222234468899999999999999998654433 3 345555566643 4 Q ss_pred hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCce--eEEEEecccCCccCC-HHH Q lcl|Aclame:pro 380 GANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVNDET--VEYNLNTDFPAARLT-PNE 455 (535) Q Consensus 380 ga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~~~--~~v~~n~df~~~~~d-~~~ 455 (535) |.-+.....+..+-..+........-.+.+.+..++++++ +++++++.|-.....+.. ..+++ +... ..| ... T Consensus 302 GqtlTs~~g~~Gs~a~~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f--~~~e-~eDl~~~ 378 (512) T protein:vir:19 302 GGTLTTEAGDKGARSLGEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVF--DTSE-AGDITAL 378 (512) T ss_pred hhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEe--cCCC-hhhHHHH Confidence 4443333222222233344555567778899999999997 599999988753222211 22332 2111 112 223 Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 456 RAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 456 ~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ++.+.++...-.|+.+.+. ++.|+-.+. ..++.... . ...+.... ....+........+..-......+++ T Consensus 379 a~~~~~l~~G~~i~~~~i~---e~~Gip~~~-~~e~~~~~---~-~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~~ 449 (512) T protein:vir:19 379 SDAIPKLAAGMRIPVSWIQ---EKLHIPQPV-GDEAVFTI---Q-PVVPDNGS-QKEAALSAEDIPQEDDIDRMGVSPED 449 (512) T ss_pred HHHHHHHhcCCCCCHHHHH---HHhCCCCCC-CccccccC---C-Cccccccc-cccccccccCCCchhhHhHHhhhHHH Confidence 3333344433336765444 344652221 11111110 0 00000000 00000000000000000000001111 No 170 >protein:vir:105429 Length: 708 # NCBI annotation: gene 3 protein # Family: family:all:487 # MgeID: mge:1556 # MgeName: Sf6 # Cross-refs: genbank:acc:NP_958179;genbank:gi:41057281;genbank:GeneID:2716676 Probab=93.46 E-value=0.0075 Score=32.24 Aligned_cols=477 Identities=9% Similarity=0.008 Sum_probs=177.4 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhhCCCCCCCCCChhhHHHHHHHHh----hhccchhHHHHHH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEYLPMPSVDSRDEEQRRRYETYLQ----RAIFYNVTARTLD 104 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~YLP~~~~~~~~~E~~~~Y~~rl~----rA~~~n~~~~tv~ 104 (535) |++... -.+...+..+ +.+......+++.. ..|- .-.+..=+.+.....+.+.+ -.+-+|.++.+|+ T Consensus 1 m~~~~~--~~~~~~~~~~---~~~~~~~~~~r~~~~~D~~f~-~~~G~QW~~~~~~~l~~~~q~~grP~~~~N~i~~~v~ 74 (708) T protein:vir:10 1 MAETLE--KKHERIMLRF---DRAYSPQKEVREKCIEATRFA-RVPGGQWEGATAAGTKLDEQFEKYPKFEINKVATELN 74 (708) T ss_pred CchhHH--HHHHHHHHHH---HHHHHhhHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHhhhhcCCCceEEcchHHHHH Confidence 886432 1223333333 33333333333322 1232 11122223333333444433 1445799999999 Q ss_pred HHhhhhhcccccccc-CH----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccchHH Q lcl|Aclame:pro 105 GMMGQVFSRDPIRQL-PP----------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTVLE 171 (535) Q Consensus 105 ~l~G~lF~k~p~~~~-p~----------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ad 171 (535) ..+|.-=++.+.+.+ |. .|..+++.+- +-++.+.-+..+|..++.+|.+|+=| ||-...++.+.- T Consensus 75 ~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~-~~~~~~~~~s~Af~d~i~~G~Gw~~~~~d~~~e~d~~~~~- 152 (708) T protein:vir:10 75 RIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADY-EETDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDDR- 152 (708) T ss_pred HHHHHHHhCCcceEEEcCCCCchHHHHHHHHHHHHHHH-HhcCchHHHHHHHHhhhhcccceeeeeeccccccCCCCCc- Confidence 999998766665532 11 1222322221 12456777899999999999999855 432111111000 Q ss_pred HHhccCCcEEEEech-hhh-hcceeeecCCccceeEEEEEE---------EEee--------c---CCCcccceeeEEEE Q lcl|Aclame:pro 172 QKLGLYRPTITLVHP-TSI-INWRTKLVGGKSVISLVVIQE---------NVLA--------Q---DDGFETTYVQQWRV 229 (535) Q Consensus 172 ~~~~~~rPy~~~~~~-~~I-i~w~~~~~~g~~~Lt~v~l~E---------~~~~--------~---~d~f~~~~~~~~rv 229 (535) .+. |+...+.| .+| +||.....+... --|+..+. .+.+ + +.++.+.....+|| T Consensus 153 ---~~i-~i~~~~~p~~~v~~Dp~a~~~D~sD-ar~~~~~~~~~~d~~~~~~p~~a~~~~d~~~~~~~~~~~~~~d~v~v 227 (708) T protein:vir:10 153 ---QRI-AIEPIYDPSRSVWFDPDAKKYDKSD-ALWAFCMYSLSPEKYEAEYGKKPPTSLDVTSMTSWEYNWFGADVIYI 227 (708) T ss_pred ---ccc-ceEEeecchhhcccCccccccChhh-hhhhhhccCCCHHHHHHhCCCCcccccccccCCCccccccCCCceEE Confidence 011 22333333 334 444432222110 00111111 0000 0 00010000011111 Q ss_pred Eee--------------cC-CceEEEEEEeeeccCC-----------------------cccc-ccceeeeccCCCccce Q lcl|Aclame:pro 230 LQL--------------NA-EGNYQVERWRRETQEE-----------------------MYYS-YSKHVPTDGNGNPFKE 270 (535) Q Consensus 230 l~l--------------~~-~g~y~v~~w~~~~~~~-----------------------~~~~-~~~~~~~~~~~~~l~~ 270 (535) -+. +. .|. +..|..+..+. .+.. .+..+......-|.+. T Consensus 228 ~ey~~r~~~~~~~~~~~~~~tg~--~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~le~~~~~p~~~ 305 (708) T protein:vir:10 228 AKYYEVRKESVDVISYRHPITGE--IATYDSDQVEDIEDELAIAGFHEVARRSVKRRRVYVSVVDGDGFLEKPRRIPGEH 305 (708) T ss_pred EEeeeEEEEEEEEEEEecCCCCc--eeeecchhhhhHHHHHHhcccchhheeeeeeEEEEEEeecchhhhccCCCCCCCc Confidence 110 00 010 01111110000 0000 0111111223457778 Q ss_pred eEEEEeccCCC---cCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee-----CCCCccchhccCcceee--- Q lcl|Aclame:pro 271 IPFQFIGPLDN---NADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT-----GLTKDWVEDVFKDFKVH--- 339 (535) Q Consensus 271 IP~v~~~~~~~---~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~-----G~~~~~~~d~~~~~~i~--- 339 (535) +|+|+|...+. +-....--+.++.+.+..++...|-+.+++-.++..+.++. |+...|..-......+. T Consensus 306 fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 385 (708) T protein:vir:10 306 IPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLPLR 385 (708) T ss_pred eeeEEEeeeeeccCCCcccceeecccchhHHHHHHHHHHHHHHHHhcCCcccccChhhhhhHHHHHhhccccchhhhccc Confidence 88887643221 11111223567788899998888888888777766655543 22222211000000000 Q ss_pred -ecCcccccCCCCCccceeecCcch-hHHHHHHHHHHHHHHH-hhh--hhcccccccchHHH-HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 340 -LGSRAIIPLPQGATAGILQITPNS-VPFEAMTHKESQMIAM-GAN--LLVKSGGNRTFGEA-QQEEASEQSILSACTKN 413 (535) Q Consensus 340 -iG~~~~~~lp~~~~~~~~e~~~~~-l~~~~l~~~e~qm~~l-ga~--~l~~~~~~~ta~~a-~~~~~~~~S~L~~~a~~ 413 (535) ++.......+....++.+++.... ...+.++.....|..+ |.. ++.. .++ +++.+ .....+..-.|..+-.| T Consensus 386 ~~~~~~G~~~~~~~~~~~~q~~~~~~~~~~l~q~~~~~i~~vsG~~~~~lG~-~sn-~SG~aI~~rq~qg~~~l~~~~Dn 463 (708) T protein:vir:10 386 EVRDKSGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQM-PSN-IAQETVNNLMNRADMASFIYLDN 463 (708) T ss_pred cccccccccccccCCccccCCccchHHHHHHHHHHHHHHHHHhCcChhHccC-ccc-hHHHHHHHHHHHHHHHHHHHHHH Confidence 111111111111123333432211 1124444444444444 222 2332 223 34433 33333333345555555 Q ss_pred HHHHH----HHHHHHHHHHcCCC-----C--CCc---------------------------eeEEEEecccCCccCCHHH Q lcl|Aclame:pro 414 VSMAF----RKALRWANQFQTGI-----V--NDE---------------------------TVEYNLNTDFPAARLTPNE 455 (535) Q Consensus 414 ~~~a~----~~~lr~~a~~~g~~-----~--~~~---------------------------~~~v~~n~df~~~~~d~~~ 455 (535) +..+. +.+|.++..|++.. . ++. .+.|.+..-........+. T Consensus 464 l~~~~~~~g~~lL~li~~~y~~er~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~yDv~i~~~p~~~s~r~~~ 543 (708) T protein:vir:10 464 MAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRDAT 543 (708) T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEEecceeccCCCcceeeeeccceeeEEEEEecccCchhHHHHH Confidence 55544 45677788877421 0 000 0011111111222234466 Q ss_pred HHHHHHHHhcCCCCH---HHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 456 RAELILEWQQGAITF---KEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 456 ~~al~~l~~~G~is~---et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) +.+|+++.++..... ..+...+-. .+ +.-..+|..+++.....-. +...+.. .+.+++....--... T Consensus 544 ~~~l~qll~~~~p~~~~~~~~~~~~l~--~~-D~p~~~ei~erir~~~~~~----~~~~~~~---~ee~q~~~~~q~~~q 613 (708) T protein:vir:10 544 VSVLTNVLSSMLPTDPMRPAIQGIILD--NI-DGEGLDDFKEYNRNQLLIS----GIAKPRN---EKEQQIVQQAQMAAQ 613 (708) T ss_pred HHHHHHHHHhcCCCchhhHHHHHHHHH--hc-CCcChHHHHHHHHHhhccc----ccccccc---hhhHHHHHHHHHHHH Confidence 777888877643221 111111111 01 1112344455554332111 0000000 000000000000000 Q ss_pred CCC Q lcl|Aclame:pro 533 AGN 535 (535) Q Consensus 533 ~~~ 535 (535) +.. T Consensus 614 ~q~ 616 (708) T protein:vir:10 614 SQP 616 (708) T ss_pred HHH Confidence 000 No 171 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=93.25 E-value=0.0082 Score=32.01 Aligned_cols=396 Identities=11% Similarity=0.059 Sum_probs=154.6 Q ss_pred CCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhh--CC------------CCCCCCCChhhHHHHH Q lcl|Aclame:pro 22 APPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEY--LP------------MPSVDSRDEEQRRRYE 87 (535) Q Consensus 22 ~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~Y--LP------------~~~~~~~~~E~~~~Y~ 87 (535) -||--|+|+ +.+++.++.....+.. +... .| -..+...+ -. T Consensus 1 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~v~------~~ 55 (432) T protein:vir:10 1 MPDEKKLGL------------------LGQLKAMFVPPDPVDI-GGGQTFTPVNATARDLGIIISDTGAAVN------AD 55 (432) T ss_pred CCCCcccch------------------hhhhHhhcCCcccccc-ccccccccCcchhhhhcccccccCcccc------hh Confidence 222333332 2222222222111100 0000 00 00000000 12 Q ss_pred HHHhhhccchhHHHHHHHHhhhhhc---cccc--cc-cCHHHHHHH-hccCCCCCCHHHHHHHHHHHHHhhCcEEEEEee Q lcl|Aclame:pro 88 TYLQRAIFYNVTARTLDGMMGQVFS---RDPI--RQ-LPPALEAIV-EDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDY 160 (535) Q Consensus 88 ~rl~rA~~~n~~~~tv~~l~G~lF~---k~p~--~~-~p~~l~~l~-~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~ 160 (535) ..++-+..+-....+-+.++++.|. +... .. ....+-.++ ..-+ ...+-.+|.+.+....+.+|-+|+++.. T Consensus 56 ~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~~g~~~~~~~~l~~lL~~~PN-~~~t~~~f~~~l~~~lll~Gnay~~~~~ 134 (432) T protein:vir:10 56 AIMRLDAVAACVKLVSQAIAAMPLTMYMRTPDGRKEAVNHPLYTLLLDGPN-STQTAFDFWQVVVTRLLLDGTAYVRKVV 134 (432) T ss_pred hhhcchHHHHHHHHHHHhhhhCceeEEEecCCCcccccccHHHHHHHhccc-ccCCHHHHHHHHHHHHhhcCCeEEEEEe Confidence 2333344445555555566666553 2111 11 223344444 2222 3477889999999999999999999865 Q ss_pred cCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEE Q lcl|Aclame:pro 161 PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQV 240 (535) Q Consensus 161 p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v 240 (535) . .|.+ --+..+.|..|- |+ .+. ++ ...|++.. .+|... T Consensus 135 ~-~g~~------------~~L~~l~~~~v~---------------v~-----~~~-~g-----~~~y~~~~--~~g~~~- 172 (432) T protein:vir:10 135 T-DGRI------------ESLQYLANDRLT---------------IT-----TDT-KG-----NTAYRYRR--TDGQMI- 172 (432) T ss_pred c-CCcE------------EEEEEEcCCceE---------------EE-----EcC-CC-----cEEEEEEe--cCceEE- Confidence 3 2321 123344454431 10 111 11 01122111 111110 Q ss_pred EEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCcee Q lcl|Aclame:pro 241 ERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTA 319 (535) Q Consensus 241 ~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~ 319 (535) . ++ +=..|-|-.+ ..+...|.+|+.-++. .+.+.....++... ....+.|-. T Consensus 173 -~----------------~~------~~~iih~~~~---~~dg~~G~spi~~~~~-~i~~~~~~~~~~~~~f~ng~~~~g 225 (432) T protein:vir:10 173 -D----------------IP------KQQIWKIMGY---SLDGENGLSAIRYGAQ-IFGTAIAAEAQAARAFRNGQLQSV 225 (432) T ss_pred -E----------------Ec------CccEEEecCC---CCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcce Confidence 0 00 0011211111 1223467788876553 34544444444433 344567777 Q ss_pred EeeCCCCccchhccC-cceee--ecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhcccccccc Q lcl|Aclame:pro 320 FFTGLTKDWVEDVFK-DFKVH--LGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRT 392 (535) Q Consensus 320 ~~~G~~~~~~~d~~~-~~~i~--iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~t 392 (535) +++.-..-..+.... ...+. ..+..++.++.+.++..+..++..... +..+....+++. +...++.......+ T Consensus 226 il~~~~~l~~e~~~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~ 305 (432) T protein:vir:10 226 YYQIDRFLTDDQYDSFAKKVSGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTT 305 (432) T ss_pred EEecCCCCCHHHHHHHHHHHhhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcc Confidence 776322111111000 00111 122345667877777666665544332 222333333333 23344432222222 Q ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 393 FGEAQQEEA---SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAIT 469 (535) Q Consensus 393 a~~a~~~~~---~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is 469 (535) +..+.++.+ --...|.-++.++++++++.|- ... ......|+++.+=.......+.+.++.+++++|.++ T Consensus 306 ~~~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~------~~~-~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T 378 (432) T protein:vir:10 306 SWGSGIESQQLGFLSMTLSPWLRRIEQSIALNLL------SPA-ERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMT 378 (432) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------Ccc-ccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCC Confidence 222222222 2234566677777777665331 110 111234444443222222234566777899999999 Q ss_pred HHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 470 FKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 470 ~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) .-+.++.+ |+ ++-...++ .+... .+..+-+.. +... ..+++.|.++.+.| T Consensus 379 ~NE~R~~~---gl-ppi~g~~~---~~~~~------~~~~pl~~~--~~~~-~~~~~~~~~~~~~~ 428 (432) T protein:vir:10 379 RDEAREIE---GL-PKLGGNAA---VLTVQ------SAMVPLDSI--GLQA-SPEPASGLGNQQQD 428 (432) T ss_pred HHHHHHHh---CC-CCCCCCcc---eEeec------Ccccchhhh--cccC-CCCCCCCCCCcccc Confidence 98877654 33 22111110 01000 000000000 0000 01111111122222 No 172 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=93.14 E-value=0.0086 Score=31.90 Aligned_cols=391 Identities=13% Similarity=0.022 Sum_probs=158.9 Q ss_pred ccCCCCCc-cCHHHHHHHHH----HHHHHHHhcChHHH-HHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHH Q lcl|Aclame:pro 30 PSLPNVGY-QRVEFGEMLPK----WRKIMDCLSGQEAI-KAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTL 103 (535) Q Consensus 30 ~~M~~v~~-~hp~y~~~~~~----w~~i~d~~~G~~~~-~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv 103 (535) .+|- |.+ +.|+..+.... +.+.+- |...+.+ |++|. ...+.-+.|+.-..+ -.++...+ T Consensus 1 ~~~~-~~~~p~~~~~~~~~~~~~~~~~~~g-~~~~D~~lr~~gg----------~~~~~~~l~~~m~e~---D~~v~s~l 65 (446) T protein:vir:98 1 MNME-VRNAPTPAIRRRTIYAMEHLGLATS-YLSEDGGYKRAGK----------PTYQQLSAWDEAAQT---EPIIAQGL 65 (446) T ss_pred Cccc-ccCCCchhhhhhhhhccccchhhcc-cCCcchHhhhcCC----------ChHHHHHHHHHHHhc---chHHHHHH Confidence 2232 222 34433222211 111000 0011111 11110 001112334443332 35666777 Q ss_pred HHHhhhhhcccccccc-CHH----HHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEee-cCCCcccchHHHHhccC Q lcl|Aclame:pro 104 DGMMGQVFSRDPIRQL-PPA----LEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDY-PNVGRPVTVLEQKLGLY 177 (535) Q Consensus 104 ~~l~G~lF~k~p~~~~-p~~----l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~-p~~~~~~t~ad~~~~~~ 177 (535) +..-..|.+.++.++- .+. ++.++++. .++.+... ...++.+|-+.+=+.+ ...+.. T Consensus 66 ~~Rk~av~~~~w~V~p~~~~~a~~v~~~l~~~-----~~~~~~~~-~ldai~~G~s~~Eivw~~~~g~~----------- 128 (446) T protein:vir:98 66 DSIALSVLNKVGPYQHGDKRIKKFIDDQLRNR-----AKTWISHC-VKSIMTYGFSLSEQIYAHGARDN----------- 128 (446) T ss_pred HHHHHHhhcCCceecCccHHHHHHHHHHHhhc-----CchhHHHH-HHHHHhhCceeeeEEEeeccccc----------- Confidence 7777777777877762 222 33444443 23333333 4677788987774443 322221 Q ss_pred CcEE-----EEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcc Q lcl|Aclame:pro 178 RPTI-----TLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMY 252 (535) Q Consensus 178 rPy~-----~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~ 252 (535) +|-- ..+.|..+ -|.++..+. + + ++ ......++..... ...|........ T Consensus 129 ~p~~~~d~~~~~~~~~~-r~~~~~~~~---~----~-------~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~- 183 (446) T protein:vir:98 129 MPATVLDDIVNYHPLQV-MLIANDNGR---I----V-------DG--DTVTASQYKSGYW-------VPLPPYRIGDPP- 183 (446) T ss_pred ccchhhccccccccccc-eeeeccCCc---c----c-------cc--cccchhhcccccc-------cCcccchhhhhh- Confidence 1110 01111111 132222110 0 0 00 0001111100000 000000000000 Q ss_pred ccccceeeeccCCCccceeEE---E-EeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCcc Q lcl|Aclame:pro 253 YSYSKHVPTDGNGNPFKEIPF---Q-FIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDW 328 (535) Q Consensus 253 ~~~~~~~~~~~~~~~l~~IP~---v-~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~ 328 (535) .. ....++. -.||+ + +......+...+.+.|.-++..-+=-....-+...-++.-+.|+++.+-..... T Consensus 184 ----~~--~~~~g~~-~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~vGkyp~ga~ 256 (446) T protein:vir:98 184 ----KK--VDVVGSH-VRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFKRAFRDMMLIALDRYGTPLIYVIVPPGNT 256 (446) T ss_pred ----hh--cccCccc-ccccccceEEEEecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHhHcCCceeEEeecCCCC Confidence 00 0000111 12443 3 233333444555555555544333323344456666788889999887432211 Q ss_pred chhc---------------cCcceeeecCcccccC-----CCCCccceeecCcchh-HH-HHHHHHHHHHHH-Hhhhhhc Q lcl|Aclame:pro 329 VEDV---------------FKDFKVHLGSRAIIPL-----PQGATAGILQITPNSV-PF-EAMTHKESQMIA-MGANLLV 385 (535) Q Consensus 329 ~~d~---------------~~~~~i~iG~~~~~~l-----p~~~~~~~~e~~~~~l-~~-~~l~~~e~qm~~-lga~~l~ 385 (535) ..+. +...-..+|..++..+ |++..+.+++..+++- .. ..++...+||.. +.+.++. T Consensus 257 ~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~~~~~~~~~~~i~~~d~~IskaiLg~~Lt 336 (446) T protein:vir:98 257 GVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTGNNFSDSFERAISLCDNNMLMGMGIPNLL 336 (446) T ss_pred cccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccccCChhhHHHHHHHHHHHHHHHHhccccc Confidence 1110 1111112344444444 9999999999987643 23 445656667644 3344332 Q ss_pred cc---ccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCceeEEEE-----ecccCCccCCHHHH Q lcl|Aclame:pro 386 KS---GGNRTFGEAQQEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVNDETVEYNL-----NTDFPAARLTPNER 456 (535) Q Consensus 386 ~~---~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~~~~~v~~-----n~df~~~~~d~~~~ 456 (535) -+ +...|-..+......-.-.+.+-+..++++++ +++++++.|-..... ..+.+ ..+|....-....+ T Consensus 337 l~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~~~---~~~~~~~~~~~~~~~e~eDl~~~a 413 (446) T protein:vir:98 337 VQNRETTFGTGRASEIQLELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDPAL---YPLASNTGYITRLPGRATDLAALV 413 (446) T ss_pred ccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cccccccccceeccCChhhHHHHH Confidence 11 11122222333333445567788889999997 699999988754221 11111 12222211112235 Q ss_pred HHHHHHHhcCCCCH--HHHHHHHHhCCCCCccCCH Q lcl|Aclame:pro 457 AELILEWQQGAITF--KEMRAGLRRAGVASEDDAK 489 (535) Q Consensus 457 ~al~~l~~~G~is~--et~~~~L~r~gvl~~~~~~ 489 (535) +++.++++.|.+.. +.++ .++.|+-+.+.+. T Consensus 414 ~~~~~L~~~G~~~p~~~~~i--re~~giP~~~~~~ 446 (446) T protein:vir:98 414 EAIKQMHDMGFLVDGDKDHI--RSITGLPDAISST 446 (446) T ss_pred HHHHHHHhCCccccccHHHH--HHHhCcCCCCCCC Confidence 55666777776432 2222 2345543222111 No 173 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=93.06 E-value=0.0089 Score=31.82 Aligned_cols=410 Identities=13% Similarity=0.015 Sum_probs=161.5 Q ss_pred CCcchhhhhhhhhc-ceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQS-KVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~ 79 (535) ||+|...=+.-+.. -.+.|. +.||-| ..+..+. .||- .-+.+. ..+.++.+ T Consensus 1 m~kk~~k~~~~~~~~~~~~~~-~~~~~~--~~~~~~~-~~~~-~g~~~~--~~~~iLr~--------------------- 52 (448) T protein:vir:77 1 MAKRGRKPKELVPGPGSIDPS-DVPKLE--GASVPVM-STSY-DVVVDR--EFDELLQG--------------------- 52 (448) T ss_pred CCCCCCCCcccCCcccccchh-hhhhhc--cchhhhc-cccc-cccccc--chhHhhcc--------------------- Confidence 99886442221111 111222 222211 1111000 0111 111000 00001101 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccc---c-CH--HH----HHHHhccC--CCCCCHHHHHHHHHHH Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQ---L-PP--AL----EAIVEDID--GEGVSLDQQAKKALGY 147 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~---~-p~--~l----~~l~~d~d--~~G~~L~~~~~~~~~~ 147 (535) ...-+.|+..+.- .++...++..-..|...++.++ - +. .+ +.++.+-+ ....+++.++..++ . T Consensus 53 ~~~~~ly~~m~~D----~hi~s~l~~Rk~av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~l-d 127 (448) T protein:vir:77 53 KDGLLVYHKMLSD----GTVKNALNYIFGRIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYE-N 127 (448) T ss_pred ccchHHHHHHhhC----hHHHHHHHHHHHHHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHH-H Confidence 0011346665443 4455555555555555565553 1 11 12 22222211 12346888888874 6 Q ss_pred HHhhCcEEE-EEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceee Q lcl|Aclame:pro 148 TMGFGRAAI-FTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQ 225 (535) Q Consensus 148 ~l~~G~~~v-lVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~ 225 (535) ++.+|.+.+ +|+....++. ..| -+..++++.+--|.++..++ T Consensus 128 a~~~G~s~~Eivw~~~~dg~----------~~~~~l~~r~~~~~~~f~~~~~~~-------------------------- 171 (448) T protein:vir:77 128 AYIYGMAAGEIVLTLGADGK----------LILDKIVPIHPFNIDEVLYDEEGG-------------------------- 171 (448) T ss_pred hhhhcceeEEEEEeecCCCc----------eeeccccccCCCccceeeeecCCc-------------------------- Confidence 888887776 3443321110 001 11222222222222222211 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEe---ccCCCcCCCCcchHHHHHHHHHHHHh Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI---GPLDNNADIDHPPLLDLCEVNIGHYR 302 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~---~~~~~~~~~~~ppL~dLA~ln~~hy~ 302 (535) .+++.. .+.+ .+. .....+ -.||+-++ .....+...+.+.|.-++..-+--.. T Consensus 172 -l~~~~~--~~~~---------~~~---------~~~~~~---~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~ 227 (448) T protein:vir:77 172 -PKALKL--SGEV---------KGG---------SQFVNG---LEIPIWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRA 227 (448) T ss_pred -eEEEec--CCcc---------ccc---------ccCCCc---cccccceEEEEecCCcCCcccchHHHHHHHHHHHHHh Confidence 000000 0000 000 000011 12343221 11222333445555555544443344 Q ss_pred hHHHHHHHHHHhcCceeEeeCCCCc--cchhc--cC--cceeeecCcccccCCCCCccceeecCcchhH-HHHHHHHHHH Q lcl|Aclame:pro 303 NSADYEEMAFVAGQPTAFFTGLTKD--WVEDV--FK--DFKVHLGSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQ 375 (535) Q Consensus 303 ~~sdl~~~l~~~~~P~~~~~G~~~~--~~~d~--~~--~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~q 375 (535) ...+...-++.-+.|+++.+.-... +..+. +. -..|..|+.++..+|.+.+..|++..+.+.. .+.++...++ T Consensus 228 ~~~~w~~f~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~ 307 (448) T protein:vir:77 228 LILLINHGLERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAG 307 (448) T ss_pred hHHHHHHHHHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCccCHHHHHHHHHHH Confidence 5567777788889999998843221 11111 11 1224568888889999999999998775543 3455555555 Q ss_pred HHH-HhhhhhcccccccchHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCceeEEEEecccCCccCC Q lcl|Aclame:pro 376 MIA-MGANLLVKSGGNRTFGEAQ-QEEASEQSILSACTKNVSMAFR-KALRWANQFQTGIVNDETVEYNLNTDFPAARLT 452 (535) Q Consensus 376 m~~-lga~~l~~~~~~~ta~~a~-~~~~~~~S~L~~~a~~~~~a~~-~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d 452 (535) |.. +.++++..+.+..+++.+. .........+.+-+..++++++ +++++++.+-... +..-..|.+. +. + T Consensus 308 Isk~iLGqtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~-~~~~P~~~f~--~~----e 380 (448) T protein:vir:77 308 IARALGIDFNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPG-ATRFPRLTFE--ME----E 380 (448) T ss_pred HHHHHhccccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCEEEec--CC----C Confidence 533 3344443322222222221 1112233445677788888887 4888777765321 1112234432 11 3 Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHH-hCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCC Q lcl|Aclame:pro 453 PNERAELILEWQQGAITFKEMRAGLR-RAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGN 531 (535) Q Consensus 453 ~~~~~al~~l~~~G~is~et~~~~L~-r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (535) +++++++.+..+. +..+++ +.|| +.... ..+.+.+...+...+.++... + ...- T Consensus 381 ~eDl~~~a~~~~~-------l~~~~~~~~~i-p~~~~-------------~~~~~~~~~~~~~~~~~~~~~--~--~~~~ 435 (448) T protein:vir:77 381 RNDFSAAANLMGM-------LINAVKDSEDI-PTELK-------------ALIDALPSKMRRALGVVDEVR--E--AVRQ 435 (448) T ss_pred hhhHHHHHHHhHH-------HHHHHHHHhcC-CccCC-------------cCCCCCchhcccccCCCCCCC--c--hhhc Confidence 4455544433221 111122 2233 21110 001111000001111111000 0 0111 Q ss_pred CCCC Q lcl|Aclame:pro 532 QAGN 535 (535) Q Consensus 532 ~~~~ 535 (535) ++.+ T Consensus 436 ~~~~ 439 (448) T protein:vir:77 436 PADS 439 (448) T ss_pred chhh Confidence 2222 No 174 >protein:vir:3139 Length: 599 # NCBI annotation: hypothetical protein # Family: family:all:1548 # MgeID: mge:64 # MgeName: VpV262 # Cross-refs: genbank:acc:NP_640321;genbank:gi:21234402;genbank:GeneID:956054 Probab=92.86 E-value=0.0097 Score=31.62 Aligned_cols=466 Identities=9% Similarity=0.054 Sum_probs=195.4 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcC-hHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSG-QEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G-~~~~~~~g~~YLP~~~~~~~~ 79 (535) |.-+-+|.-.-.++ -+..|-=-......|+...|.-.= .+.|++. ..|+-.-..- .. T Consensus 1 m~~~~~~~~~~~~~--------------------~~~~~~~~~~v~~~~~~~~~~r~~~~~~w~e~-~~yi~~~~tr-~t 58 (599) T protein:vir:31 1 MSTDIKTLQKMLEG--------------------RDDDRAFIDELVVLFTNMENARAQKDREDKEL-MDYIDATDTR-KT 58 (599) T ss_pred CccchHHHHHHhhc--------------------cCchHHHHHHHHHHHHhhhhhhhhhhcccHHH-HHHHhhhccc-cc Confidence 44444443332222 233455545566777777665432 3334442 3343211100 00 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhh----hccccccc----cCH--------HHHHHHhccCCCCCCHHHHHHH Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQV----FSRDPIRQ----LPP--------ALEAIVEDIDGEGVSLDQQAKK 143 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~l----F~k~p~~~----~p~--------~l~~l~~d~d~~G~~L~~~~~~ 143 (535) ..++..|+ .++..|.+-.+++.+.... |-..-=++ .|+ .++.+..|= ..-.++..-... T Consensus 59 ~~~~~~w~----~s~t~~k~~~~~~~l~a~~~~~~fp~~~w~d~~~~~~~~~~~~~~~~i~~yi~~K-l~e~~~~~~~~~ 133 (599) T protein:vir:31 59 SNSKLPFK----NSTTINKLAHLHLMITTSYMEHLLPNRNWVDFVGFDNDSVNAEKREIARSYVRGK-VEASNLEGVIER 133 (599) T ss_pred ccCCCCcc----cccchHHHHHHHHHHHHHHHhhhcCCccceEeeecCCchhHHHHHHHHHHHhhhh-hhhcchHHHHHH Confidence 00111122 2445566666666555444 43221121 122 233343221 112356677888 Q ss_pred HHHHHHhhCcEEEEEeecC----CCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEE------- Q lcl|Aclame:pro 144 ALGYTMGFGRAAIFTDYPN----VGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENV------- 212 (535) Q Consensus 144 ~~~~~l~~G~~~vlVD~p~----~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~------- 212 (535) .+..-+.+|-|+.-|++-. ..+. .....-..|-+..++|.+|+ |+..-..-.....-||...+. T Consensus 134 ~v~d~i~~G~~vat~~~er~~~~~~d~----~v~~~~~~P~~ervsP~Di~-~Dp~A~si~d~~fivRs~~Tk~~L~~l~ 208 (599) T protein:vir:31 134 MVDDFAVRGFCVAHTRHVKRMTVTAEN----QVIKNYSGTVTERLSPSDVF-WDVTADSLPKAAKCIRQLYTLGSLKREI 208 (599) T ss_pred HHhhhcccCceeEeeeEEEcceeeccc----ccccccccceEEeeccccee-eCCCCCCCCcceeeeehhhhHHHHHHHh Confidence 8999999999988888422 1111 12233456999999998774 332111111111112222210 Q ss_pred eec------------------------CCCccc---ce----eeEEEEEe---------ecCCceEEEEEEeeeccCCc- Q lcl|Aclame:pro 213 LAQ------------------------DDGFET---TY----VQQWRVLQ---------LNAEGNYQVERWRRETQEEM- 251 (535) Q Consensus 213 ~~~------------------------~d~f~~---~~----~~~~rvl~---------l~~~g~y~v~~w~~~~~~~~- 251 (535) .++ .|+|.. .. ..++++++ |.-||-| |.+++++.. T Consensus 209 ~~~~~~~y~~d~~~~~~~~~~~~~~~~~d~~~~~~g~D~~~~d~~~~~~eY~~~~~VevLeywGd~----ydee~d~~~~ 284 (599) T protein:vir:31 209 EEGTFPLMSMEDFQKLREERRTIREALADGYNGRRKFDSLHKKGYGSMMNYINEGVVEVLTFMGDF----YDEENDELWN 284 (599) T ss_pred ccCCccccchHHHHHHHhhccCCCccccchhhhhhhccccccccccchhhhcccchhhhhhhhhhh----hcccCCcccc Confidence 000 011100 00 00111110 0012211 111111100 Q ss_pred -----cccccceeeeccCCCccceeEEEEecc-CCCcCCCCcchHHHHHHHHHHH---HhhHHHHHHHHHHhcCceeEee Q lcl|Aclame:pro 252 -----YYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNNADIDHPPLLDLCEVNIGH---YRNSADYEEMAFVAGQPTAFFT 322 (535) Q Consensus 252 -----~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~~~~~~ppL~dLA~ln~~h---y~~~sdl~~~l~~~~~P~~~~~ 322 (535) +.+....+.......+.+.+||++.+- ......++..||..+..+...+ +|...|. +-....|++... T Consensus 285 ~~ViTi~g~~~liR~e~np~~~g~~Pyvv~~~~P~~~~~yG~G~l~~~~gaQ~~lN~~~Ng~iD~---~~~~l~p~l~~~ 361 (599) T protein:vir:31 285 NYEITVIDRKIIGRKQSKDTWDGSQNLHIAVYEFQKDTLCPIGPLHRLTGMQYKLDKRENFREDL---HDRFLHPSLKKV 361 (599) T ss_pred ceEEEEecCcEEeecccCCCCCCCCCeEEEEeeeeccccCCCCCchhcchHHHHHHHHHHHhhhh---hhhhhccccccc Confidence 001011112334446778899997643 3344556666665555444443 3444443 333446777766 Q ss_pred CCCCccchhccCcceeeecCcccccCCCCCccceeecCcchhHHHH-HHHHHHHHHHH-hhhhhc---ccccccchHHHH Q lcl|Aclame:pro 323 GLTKDWVEDVFKDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEA-MTHKESQMIAM-GANLLV---KSGGNRTFGEAQ 397 (535) Q Consensus 323 G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~-l~~~e~qm~~l-ga~~l~---~~~~~~ta~~a~ 397 (535) |.-. +..+.-+++.+|.....+.+.+..+..+.+.++. +...+.+|-.+ |+.+.. .+.+.+||++.+ T Consensus 362 ~dl~--------~eD~~~~P~~v~~~~d~~~vq~~~p~s~~~~a~~~is~~e~~mee~sGvp~~~~G~~~ag~~TA~~is 433 (599) T protein:vir:31 362 GDVR--------EKGMRGGPNHVFEVEETGDVQYMTPPAEVLQPDNQLSITLQLMEDLSGAPKESIGQRTAGEKTKFEVQ 433 (599) T ss_pred cccc--------ccCccCCCCcceeecCCCccccccCchhhhhHHHHHHHHHHHHHHhhccchhhcCCcccchhhHHHHH Confidence 6321 1224556788888777777776666655555543 45555666554 443332 234556777766 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHcCCCCCCceeE-----------EEEecccCCc-----cC----- Q lcl|Aclame:pro 398 QEEASEQSILSACTKNVSMAFR-----KALRWANQFQTGIVNDETVE-----------YNLNTDFPAA-----RL----- 451 (535) Q Consensus 398 ~~~~~~~S~L~~~a~~~~~a~~-----~~lr~~a~~~g~~~~~~~~~-----------v~~n~df~~~-----~~----- 451 (535) .-....+.....+...+++.+- +++.+..+|+. +++.+. +++.+++... .+ T Consensus 434 ~l~naa~~~~~~~vr~~e~~~lepll~~l~e~~~~f~D---~~~tiri~~~e~~~~~f~~i~redl~~~~~~v~~Ga~~v 510 (599) T protein:vir:31 434 LLDQGQNKVFRRKVKKFERELLTPVLNDYLEQGRNHLD---ASDTIKTFNSELGTATFLDITADDLNLNGQMVAQGATLF 510 (599) T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cccceeeecccccceeeEEeehhhhhCCeeeeechhhHH Confidence 5444555566666666665543 34444444432 112221 2222332221 11 Q ss_pred --CHHHHHHHHHHHh-------cCCCCHHHHHHHHHh------CCCCCccCCHHHHHH--H-----HHhchhhccc--CC Q lcl|Aclame:pro 452 --TPNERAELILEWQ-------QGAITFKEMRAGLRR------AGVASEDDAKAETEG--K-----ATVEFIAKTA--AA 507 (535) Q Consensus 452 --d~~~~~al~~l~~-------~G~is~et~~~~L~r------~gvl~~~~~~eee~~--~-----i~~e~~~~~~--~~ 507 (535) -++.++-|+...+ .+.+++..+.+.|.. -++-.+.....|-+. + ++++-..+.. .- T Consensus 511 ~ere~~~q~l~~il~~~~~q~~~P~~~~k~l~~~l~~~~~l~~~~~~~~~va~~eqq~~~~m~Q~~lq~~~~~~~~~~~~ 590 (599) T protein:vir:31 511 AEKANTLQNLNAILGGPLGAALAPHMSRTKLFNAVEYLGDLDAYGIFTFGIGVQEDQQLARMAQKSTQQTEETALTQEEV 590 (599) T ss_pred HHHHHHHHHHHHHhcccCCCccchhhHHHHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHHHHHHHhHhhhhhhhhc Confidence 1222333444442 244555555444433 222222222222111 1 1111000100 00 Q ss_pred CcCCCCCCC Q lcl|Aclame:pro 508 GKVGDAASG 516 (535) Q Consensus 508 ~~~~~~~~~ 516 (535) +.|+....+ T Consensus 591 ~~~~~~~~~ 599 (599) T protein:vir:31 591 GGPTTDTGQ 599 (599) T ss_pred CCCCcccCC Confidence 111111111 No 175 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=92.23 E-value=0.012 Score=31.06 Aligned_cols=407 Identities=12% Similarity=0.043 Sum_probs=154.5 Q ss_pred CCCCCccCHHH---------HHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHH Q lcl|Aclame:pro 32 LPNVGYQRVEF---------GEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTART 102 (535) Q Consensus 32 M~~v~~~hp~y---------~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~t 102 (535) |.|.=++...- ....+....+.+.++|. ...|. ..+ .+.-++.+..+-....+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~g~---------~v~------~~~al~~~~V~~~v~~I 62 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGA---WQQGV---------KAD------PEAVLSFHAVFACISLI 62 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcch---hhcCc---------ccC------hHHhhccHHHHHHHHHH Confidence 44433221110 01111122233344441 11111 011 11122222222334444 Q ss_pred HHHHhhhhhc---cccc---cccC-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhc Q lcl|Aclame:pro 103 LDGMMGQVFS---RDPI---RQLP-PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLG 175 (535) Q Consensus 103 v~~l~G~lF~---k~p~---~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~ 175 (535) -+.++++.|. +... .... ..+..|+..-+ ...+-.+|.+.+....+.+|.+++++.....|.+. T Consensus 63 a~~iA~lp~~~~~~~~~g~~~~~~~~~~~~L~~~PN-~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~-------- 133 (454) T protein:vir:93 63 SQDIAKMRLRLMQTDAQGIRRETRRGDIARLCRRPN-AQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIK-------- 133 (454) T ss_pred HHhhccCceEEEEeccCCccchhhhHHHHHHHhcCC-CCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEE-------- Confidence 4444444442 2211 0111 12334444333 34678899999999999999999999876554321 Q ss_pred cCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccc Q lcl|Aclame:pro 176 LYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSY 255 (535) Q Consensus 176 ~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~ 255 (535) -+..++|..|- + +.. +++ . -.|++......+.+. T Consensus 134 ----~L~~i~~~~v~---------------v-----~~~-~~g---~--~~y~~~~~~~~~~~~---------------- 167 (454) T protein:vir:93 134 ----ELRILDWNRVE---------------P-----LVA-DDG---E--VFYRITPDRNCGITE---------------- 167 (454) T ss_pred ----EEEEEcCcceE---------------E-----EEc-CCC---c--EEEEEEeccccccce---------------- Confidence 45566666551 0 011 111 0 011111000000000 Q ss_pred cceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCC---Cccch Q lcl|Aclame:pro 256 SKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLT---KDWVE 330 (535) Q Consensus 256 ~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~---~~~~~ 330 (535) ....+.+ . ++.+ .....+...|.+|+.-+.. .+.......++...+ ...+.|-.+++--. ++... T Consensus 168 ~~~~~~~----e-----ViH~k~~~~~~~~~G~sp~~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~ 237 (454) T protein:vir:93 168 AVTVPAR----E-----VIHDRFNCFFHPLIGLPPVYAAGL-AATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAK 237 (454) T ss_pred eEEecCc----c-----eEEeccCCCCCCceeccHHHHHHH-HHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHH Confidence 0000000 0 1111 1122344567888865543 344444444454433 34456766665321 11111 Q ss_pred hccCc-ceeeec--CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHH Q lcl|Aclame:pro 331 DVFKD-FKVHLG--SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASE 403 (535) Q Consensus 331 d~~~~-~~i~iG--~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~ 403 (535) ...+. +...-| ...++.++.+.++..+..++..... +..+....+++. +...++........++.......-. T Consensus 238 ~~~~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~ 317 (454) T protein:vir:93 238 KLKSNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYY 317 (454) T ss_pred HHHHHHHHHhcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHHHHH Confidence 00000 011123 2235667777777666665544321 222222333333 2333332221111111111122234 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC Q lcl|Aclame:pro 404 QSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVA 483 (535) Q Consensus 404 ~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl 483 (535) +..|.-++..++++++..|- .+ .+ ..|+++.+=.........+.++.++++.|.++.-.+++.+ |.- T Consensus 318 ~~~l~P~~~~ie~~ln~~L~-----~~---~~--~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~---gl~ 384 (454) T protein:vir:93 318 SQCLQTLIESIELLLDEALE-----TG---EN--ESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRE---NLP 384 (454) T ss_pred HHHHHHHHHHHHHHHHHhhc-----CC---CC--cEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCC Confidence 56677788888877765441 11 11 2344443322222224456778899999999988887654 321 Q ss_pred C--ccCCHHH-----HHHHHHhchhhcccCCCcCCCCCCCcccccccccc-c--CCCCCCCC Q lcl|Aclame:pro 484 S--EDDAKAE-----TEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNG-N--GGGNQAGN 535 (535) Q Consensus 484 ~--~~~~~ee-----e~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~ 535 (535) + ..+..-- -.+.+... .+...+....+.+++...+....+.+ + -....+++ T Consensus 385 pi~ggD~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~e~~~d~~~ 445 (454) T protein:vir:93 385 PLAGGDALYLQQQNYSLEALSRR-DAREDPFASSGKTASVPQAVAASDGNKAITETEHDAVK 445 (454) T ss_pred CCCCCCeeeeccCccchHhhhcc-CcccCCCCCCccCCCCCCCCCCCCCCCCccCCccchhh Confidence 1 1111000 00000000 00000000000000000000000000 0 00111222 No 176 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=91.87 E-value=0.014 Score=30.77 Aligned_cols=401 Identities=10% Similarity=0.087 Sum_probs=150.5 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM 107 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~ 107 (535) +|.|-..-.+ ...+. .-..+.++..+.++.. . .+..|- . ...+.-+..+..+..+-+.++ T Consensus 1 Mg~f~~~~~r-~~~~~-~~~~~~~~~~~~~~~~-~--~~~~~~---------~------~~al~~~~v~~cv~~Ia~~iA 60 (416) T protein:vir:81 1 MGIFYKNEKR-DLQYN-EDDLQMMVQTLPGFQG-T--KLRQYK---------D------IEAIRHSDIFTAVMMIASDLA 60 (416) T ss_pred CCcccccccc-cccCC-CcchhHHHHHhccccc-c--Cccccc---------h------hhhhcchHHHHHHHHHHHhhc Confidence 2222110000 00000 0000111111111100 0 001110 0 111222222233444444555 Q ss_pred hhhhccc--cccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEec Q lcl|Aclame:pro 108 GQVFSRD--PIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVH 185 (535) Q Consensus 108 G~lF~k~--p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~ 185 (535) ++.|+-. -.....+.+..++..-=....+-.+|.+.+....+.+|.+|+++.....|.++ -+..++ T Consensus 61 ~~p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~------------~L~~i~ 128 (416) T protein:vir:81 61 RMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPM------------NLTFRK 128 (416) T ss_pred cCceEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EEEEEc Confidence 5444311 11122233444443222235678899999999999999999999876554321 355556 Q ss_pred hhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCC Q lcl|Aclame:pro 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG 265 (535) Q Consensus 186 ~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~ 265 (535) |.+|- +..++++ . ..|+....+..+.... ...+ T Consensus 129 ~~~v~---------------------v~~~~~g---~--~~~~~~~~~~~~~~~~----------------~~~~----- 161 (416) T protein:vir:81 129 TSEIE---------------------LKSDARG---R--LYYFHQRIDSNGNNIE----------------RNVK----- 161 (416) T ss_pred CceeE---------------------EEECCCc---c--EEEEEEEecCCCceeE----------------EEEc----- Confidence 65541 0111111 0 0111111111110000 0000 Q ss_pred CccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEee--CC-CCccchhccCc--ceee Q lcl|Aclame:pro 266 NPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFT--GL-TKDWVEDVFKD--FKVH 339 (535) Q Consensus 266 ~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~--G~-~~~~~~d~~~~--~~i~ 339 (535) -..| +++.....+...|.+|+.-++. .+.......++...+ ...+.|..++. |. .++...+.... +... T Consensus 162 --~~ev--ihir~~~~d~~~G~s~i~~~~~-~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~ 236 (416) T protein:vir:81 162 --FEDM--LDIKFYSLDGINGLSLLDTLSR-TIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSF 236 (416) T ss_pred --cccE--EEeccCCCCCccccCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 1111 1111112233467788766553 445555555555444 44567777765 22 11111111000 0111 Q ss_pred ecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 340 LGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTK 412 (535) Q Consensus 340 iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~ 412 (535) -|. ..++.++.+.++..+..++..+.. +..+....+++. +...++.......+..+.... ..+ .|.-++. T Consensus 237 ~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~--~~~-~l~P~~~ 313 (416) T protein:vir:81 237 SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--YLS-TLKPYIT 313 (416) T ss_pred cCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--HHH-HHHHHHH Confidence 232 234567766666555555443321 222222233332 233344322221121222222 222 4666777 Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHH Q lcl|Aclame:pro 413 NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAET 492 (535) Q Consensus 413 ~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee 492 (535) +++++++..| ..++ . ...|+++.+=.........+.++-++++.|.++.-.+++.+ |+ ++....+.. T Consensus 314 ~ie~~ln~~l--~~~~-----~--~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~---gl-~p~~~gd~~ 380 (416) T protein:vir:81 314 CVCAELNFKF--NDEY-----V--NREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRD---GL-APIPGGNGS 380 (416) T ss_pred HHHHHHhhhc--cccc-----c--CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCcc Confidence 7777776554 1111 1 12344443322222234456677789999999998887654 43 222111110 Q ss_pred HHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 493 EGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 493 ~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) .-.+... ...-+..+.-+....++..+++-||..-- T Consensus 381 ~~~~~~n-----~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 381 IHRVDLN-----HVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred eEeeccc-----ccccccccccCcccccccccccCCCCCCC Confidence 0000000 00000011101111111112222222111 No 177 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=91.87 E-value=0.014 Score=30.77 Aligned_cols=401 Identities=10% Similarity=0.087 Sum_probs=150.5 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM 107 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~ 107 (535) +|.|-..-.+ ...+. .-..+.++..+.++.. . .+..|- . ...+.-+..+..+..+-+.++ T Consensus 1 Mg~f~~~~~r-~~~~~-~~~~~~~~~~~~~~~~-~--~~~~~~---------~------~~al~~~~v~~cv~~Ia~~iA 60 (416) T protein:vir:45 1 MGIFYKNEKR-DLQYN-EDDLQMMVQTLPGFQG-T--KLRQYK---------D------IEAIRHSDIFTAVMMIASDLA 60 (416) T ss_pred CCcccccccc-cccCC-CcchhHHHHHhccccc-c--Cccccc---------h------hhhhcchHHHHHHHHHHHhhc Confidence 2222110000 00000 0000111111111100 0 001110 0 111222222233444444555 Q ss_pred hhhhccc--cccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEec Q lcl|Aclame:pro 108 GQVFSRD--PIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVH 185 (535) Q Consensus 108 G~lF~k~--p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~ 185 (535) ++.|+-. -.....+.+..++..-=....+-.+|.+.+....+.+|.+|+++.....|.++ -+..++ T Consensus 61 ~~p~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~------------~L~~i~ 128 (416) T protein:vir:45 61 RMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPM------------NLTFRK 128 (416) T ss_pred cCceEEecCccccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EEEEEc Confidence 5444311 11122233444443222235678899999999999999999999876554321 355556 Q ss_pred hhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCC Q lcl|Aclame:pro 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG 265 (535) Q Consensus 186 ~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~ 265 (535) |.+|- +..++++ . ..|+....+..+.... ...+ T Consensus 129 ~~~v~---------------------v~~~~~g---~--~~~~~~~~~~~~~~~~----------------~~~~----- 161 (416) T protein:vir:45 129 TSEIE---------------------LKSDARG---R--LYYFHQRIDSNGNNIE----------------RNVK----- 161 (416) T ss_pred CceeE---------------------EEECCCc---c--EEEEEEEecCCCceeE----------------EEEc----- Confidence 65541 0111111 0 0111111111110000 0000 Q ss_pred CccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEee--CC-CCccchhccCc--ceee Q lcl|Aclame:pro 266 NPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFT--GL-TKDWVEDVFKD--FKVH 339 (535) Q Consensus 266 ~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~--G~-~~~~~~d~~~~--~~i~ 339 (535) -..| +++.....+...|.+|+.-++. .+.......++...+ ...+.|..++. |. .++...+.... +... T Consensus 162 --~~ev--ihir~~~~d~~~G~s~i~~~~~-~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~ 236 (416) T protein:vir:45 162 --FEDM--LDIKFYSLDGINGLSLLDTLSR-TIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSF 236 (416) T ss_pred --cccE--EEeccCCCCCccccCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 1111 1111112233467788766553 445555555555444 44567777765 22 11111111000 0111 Q ss_pred ecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 340 LGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTK 412 (535) Q Consensus 340 iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~ 412 (535) -|. ..++.++.+.++..+..++..+.. +..+....+++. +...++.......+..+.... ..+ .|.-++. T Consensus 237 ~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~~~--~~~-~l~P~~~ 313 (416) T protein:vir:45 237 SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLD--YLS-TLKPYIT 313 (416) T ss_pred cCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccHHHHHHH--HHH-HHHHHHH Confidence 232 234567766666555555443321 222222233332 233344322221121222222 222 4666777 Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHH Q lcl|Aclame:pro 413 NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAET 492 (535) Q Consensus 413 ~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee 492 (535) +++++++..| ..++ . ...|+++.+=.........+.++-++++.|.++.-.+++.+ |+ ++....+.. T Consensus 314 ~ie~~ln~~l--~~~~-----~--~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~---gl-~p~~~gd~~ 380 (416) T protein:vir:45 314 CVCAELNFKF--NDEY-----V--NREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRD---GL-APIPGGNGS 380 (416) T ss_pred HHHHHHhhhc--cccc-----c--CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCcc Confidence 7777776554 1111 1 12344443322222234456677789999999998887654 43 222111110 Q ss_pred HHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 493 EGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 493 ~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) .-.+... ...-+..+.-+....++..+++-||..-- T Consensus 381 ~~~~~~n-----~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 381 IHRVDLN-----HVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred eEeeccc-----ccccccccccCcccccccccccCCCCCCC Confidence 0000000 00000011101111111112222222111 No 178 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=91.56 E-value=0.015 Score=30.54 Aligned_cols=366 Identities=12% Similarity=0.080 Sum_probs=142.4 Q ss_pred ccccCCCCCccCHHHHHHHHHH--HHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKW--RKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w--~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) .|.+-. ......+.......| ..+....+|.. ..|+ .. +.+++ .+.+..+|+. T Consensus 1 Mg~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~~~~------~~~v--------~~------~~~l~----~~~v~~~i~~ 55 (383) T protein:vir:10 1 MGLLTP-KNFSKRNAKNMVYPSNPAFFTTTVGGMQ------LSYV--------SA------LSALQ----NTNVYSVINR 55 (383) T ss_pred CCcccc-cccccccccccccccchhhhhhhccCcc------cccc--------ch------hHhhc----chHHHHHHHH Confidence 111110 000000000000000 00011111110 0011 00 11122 2233344444 Q ss_pred HhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEec Q lcl|Aclame:pro 106 MMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVH 185 (535) Q Consensus 106 l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~ 185 (535) +++.+-+-+..+. -.....+++..+ ...+-.+|.+.+....+.+|.++++++-. + +.+++ T Consensus 56 ia~~ia~~~~~~~-~~~~~~ll~~PN-~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~-----------------~-~~~~p 115 (383) T protein:vir:10 56 IASDVSSAHFKTE-NTATLNRLESPS-SLIGRFSFWQGALMQLCLSGNDYIPLVGQ-----------------N-LEHIP 115 (383) T ss_pred HHHhhccCceeec-ccchhhhhhCCC-CCCCHHHHHHHHHHHhhhcCCeEEEEEcC-----------------c-eeEee Confidence 4444333332222 122334555444 45788999999999999999999999621 1 11122 Q ss_pred hhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCC Q lcl|Aclame:pro 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG 265 (535) Q Consensus 186 ~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~ 265 (535) +..+ .|.+ ....++ .. |++... ..+. .. ..+ T Consensus 116 ~~~~---------------~v~~----~~~~~~----~~--~~~~~~--------------~~~~-~~----~~~----- 146 (383) T protein:vir:10 116 NSDV---------------QINY----LPGNMG----IV--YTVLES--------------NDRP-KM----VLR----- 146 (383) T ss_pred cCcc---------------eEEE----EEcCCc----eE--EEEEEc--------------CCce-EE----EEc----- Confidence 1111 1111 001110 00 111100 0000 00 000 Q ss_pred CccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH-HHHHHhcCceeEeeCCC---CccchhccCc--ceee Q lcl|Aclame:pro 266 NPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE-EMAFVAGQPTAFFTGLT---KDWVEDVFKD--FKVH 339 (535) Q Consensus 266 ~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~-~~l~~~~~P~~~~~G~~---~~~~~d~~~~--~~i~ 339 (535) +-.+|=|-.++........|.||+.-+...- ........+. ......+.|-.+++--. ++...+.... +... T Consensus 147 -~~evih~r~~~~~~~~~~~G~s~l~~~~~~i-~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~ 224 (383) T protein:vir:10 147 -QDQMLHFRLMPDPQYRYLIGRSPLESLQNAL-NLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKAN 224 (383) T ss_pred -ccceEEeccCCCCcccccccccHHHHHHHHH-HHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 0011111111222233456888887655433 3223333333 33444567776666321 1111110000 1111 Q ss_pred ecC--cccccCCCCCccceeecCcchhH--HHHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHH--HHHHHHHHH Q lcl|Aclame:pro 340 LGS--RAIIPLPQGATAGILQITPNSVP--FEAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEA--SEQSILSAC 410 (535) Q Consensus 340 iG~--~~~~~lp~~~~~~~~e~~~~~l~--~~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~--~~~S~L~~~ 410 (535) -|. ..++.++.+.++..+..++.... .+..+....+++. +...++.... ..+++.+.++.. .-...|.-+ T Consensus 225 ~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~-~~~~~~sn~eq~~~~~~~~l~P~ 303 (383) T protein:vir:10 225 TGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGT-STESQHSNIDQIKATYLANLNSY 303 (383) T ss_pred CccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcc-CCCCccccHHHHHHHHHHHHHHH Confidence 232 24566787777776666655443 1333433444443 2333343211 111111111111 112246666 Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHH Q lcl|Aclame:pro 411 TKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKA 490 (535) Q Consensus 411 a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~e 490 (535) +..++++++..| .+ .. ++++.+-.........+.++-+++++|.++..++++.|-.-++.+.+ . T Consensus 304 ~~~ie~~l~~~l------~~-----~~--~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d-~-- 367 (383) T protein:vir:10 304 VNPIVDELRLKM------NA-----PD--LELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDN-L-- 367 (383) T ss_pred HHHHHHHHHHhh------CC-----ce--EEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCc-c-- Confidence 666666665432 12 12 34443333333335567778899999999999888776444432222 1 Q ss_pred HHHHHHHhchhhcccCCCcCCCCCCCcccc Q lcl|Aclame:pro 491 ETEGKATVEFIAKTAAAGKVGDAASGGTNK 520 (535) Q Consensus 491 ee~~~i~~e~~~~~~~~~~~~~~~~~~~~~ 520 (535) +......+ +..|++|+ T Consensus 368 -------------~~~~~~~~-~~~gGd~e 383 (383) T protein:vir:10 368 -------------PEFKPLTN-ETKGGDDK 383 (383) T ss_pred -------------cccCCCcc-cCCCCCCC Confidence 11111111 22234444 No 179 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=91.42 E-value=0.016 Score=30.44 Aligned_cols=420 Identities=12% Similarity=0.071 Sum_probs=154.7 Q ss_pred cccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHH-H-HhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH Q lcl|Aclame:pro 27 GLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKA-K-REEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD 104 (535) Q Consensus 27 ~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~-~-g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~ 104 (535) =..+.|+-++. .+|..+...-. ...+.. . ++-|-|. ++ +....+-+.-.++....|+ T Consensus 1 ~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~~~~~~~pp-----~~------~~~La~~~~~n~~v~scI~ 59 (540) T protein:vir:41 1 MFNYHLSIKSL---------EKYRAIKGDTD-SQALKEDRFEEYVEPK-----VH------PLVLLSLLQVNPYHASACS 59 (540) T ss_pred CCCcccChhhc---------cchhhhhcccc-ccccccCCCCccccCC-----CC------HHHHHHHHHhcHHHHHHHH Confidence 22334442222 12332222211 111111 1 1122222 11 2222222222345567777 Q ss_pred HHhhhhhccccccccC-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEE Q lcl|Aclame:pro 105 GMMGQVFSRDPIRQLP-PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITL 183 (535) Q Consensus 105 ~l~G~lF~k~p~~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~ 183 (535) .++..+-+-+..+... ..+..++.|.. .+-.+|.+.+....+.+|.+|+++-....|.+ -.+.. T Consensus 60 ~ia~~ia~~~~~i~~~~~~~~~~lpN~~---~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~------------~~L~~ 124 (540) T protein:vir:41 60 IKANDILRTGYLIDGDDGGVEELLRACR---PSFEFILLQALEDLQVFNYCTLEVVRDDQGEP------------VRLDY 124 (540) T ss_pred HHHHHHhcCCceEecCccchhhhccCCC---CCHHHHHHHHHHHHHhcCCeEEEEEECCCCcE------------EEEEE Confidence 7777665555444322 23444555543 46789999999999999999999987665542 14556 Q ss_pred echhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeecc Q lcl|Aclame:pro 184 VHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDG 263 (535) Q Consensus 184 ~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~ 263 (535) ++|..| +... +.+.| + ...+.++.+....|..... .....+.. T Consensus 125 i~~~~V---~v~~------------------~~~~~-------~--~~~d~~~~~~~~~~~~~~~--~~~~~g~~----- 167 (540) T protein:vir:41 125 IPAHTV---RVHR------------------DGSRY-------M--QTWDGIHVTYFKDYRYEGE--VNPDNGED----- 167 (540) T ss_pred eCCcce---EEeE------------------cCcee-------E--eeecCceeeeeecccccce--eecccccc----- Confidence 666655 1111 11110 0 0000011110011100000 00000000 Q ss_pred CCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEee--CC-CCccch--h----- Q lcl|Aclame:pro 264 NGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFT--GL-TKDWVE--D----- 331 (535) Q Consensus 264 ~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~--G~-~~~~~~--d----- 331 (535) ...+..=-++++ .....+...|.||+..++. .+..-....++... ....++|-.+++ |. .++... + T Consensus 168 -~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~-~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~e~~~~~~~~~~~ 245 (540) T protein:vir:41 168 -QDGVGANEIIFIHLPSPICSYYGVPRYLSAAP-SILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDEMELGSDGEPTG 245 (540) T ss_pred -ceeecccceEEecCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceEEEeCcccCchhccchHHHHHH Confidence 000111112333 2233455678899876543 33333333334333 334667877665 21 111100 0 Q ss_pred ------ccCc--ceee--ecCcccccCCC--CCccceeec--CcchhHH-HHHHHHHHHHHH---Hhhhhhcc---cccc Q lcl|Aclame:pro 332 ------VFKD--FKVH--LGSRAIIPLPQ--GATAGILQI--TPNSVPF-EAMTHKESQMIA---MGANLLVK---SGGN 390 (535) Q Consensus 332 ------~~~~--~~i~--iG~~~~~~lp~--~~~~~~~e~--~~~~l~~-~~l~~~e~qm~~---lga~~l~~---~~~~ 390 (535) .... .++. -|.-.++..|. +.+.+|..+ .+..... +..+....++++ +...++.. ++.+ T Consensus 246 ~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp~~lG~~~~~~~n 325 (540) T protein:vir:41 246 RTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDPYRLGITDVGPLG 325 (540) T ss_pred HHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccCCCCC Confidence 0000 0000 01111222221 123333333 3332221 222233333333 23334321 1111 Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCH Q lcl|Aclame:pro 391 RTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITF 470 (535) Q Consensus 391 ~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~ 470 (535) .+ +.......-....|.-+...+++++++.|. .. . +....|+++.+= -+..+....+..++++|.++. T Consensus 326 ~s-n~eq~~~~f~~~tL~P~~~~ie~~ln~~L~--~~-~-----~~~~~i~f~~~~---ll~~D~~~~~~~lv~~G~lT~ 393 (540) T protein:vir:41 326 GN-FAEVARRTYYESVVRPQQEIVSSVLTDFIQ--LK-L-----DPGARFVFNEEI---LMESEFVHNYALLVQCGVLTP 393 (540) T ss_pred cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hc-c-----CCceEEEecchh---hcchHHHHHHHHHHhCCCCCH Confidence 11 111112223355678888888888887542 11 1 122445444321 122344455667889999998 Q ss_pred HHHHHHHHhCCCCCccCCH--------HHHHHHHHhchhhcccC---CCcCCCCCCCc-ccccccccccCCCCCCCC Q lcl|Aclame:pro 471 KEMRAGLRRAGVASEDDAK--------AETEGKATVEFIAKTAA---AGKVGDAASGG-TNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 471 et~~~~L~r~gvl~~~~~~--------eee~~~i~~e~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 535 (535) -..++.| .++-+.++.. .+....-..+-.+++.. .....+.+.++ -+....-..++++..-+. T Consensus 394 NE~Re~L--~g~e~gdd~~l~p~n~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (540) T protein:vir:41 394 SEVREKL--FGLDGGPDMFMVPSSIGKSAMKRQKRNYEKNQINEIKRTYAKYKPRIQEIISSESPLEDKKKKIDEVL 468 (540) T ss_pred HHHHHHh--CcCcCCCcccccccccccccccccccccCCCCccccccccchhcccccCccccccccccccccccccc Confidence 8887655 2322211111 00000000000000000 00000000000 000000000011110000 No 180 >protein:vir:98506 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1592 # MgeName: BMP-1 # Cross-refs: genbank:acc:NP_996583;genbank:gi:45569514;genbank:GeneID:2767834 Probab=91.28 E-value=0.017 Score=30.34 Aligned_cols=457 Identities=9% Similarity=0.032 Sum_probs=175.9 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCC-CCChhhHHHHHHHHhhhccchhHHHHHHHH---- Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVD-SRDEEQRRRYETYLQRAIFYNVTARTLDGM---- 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~-~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l---- 106 (535) |.+-. .+..+.+.....+--|.-+ +..|++...-.||....+ ..+..+... +..+ .|-+...+.++.+ T Consensus 1 M~~~~-~~~~l~~r~~~l~~~R~~~--e~~w~e~~~~~lP~~~~~~~~~~~~~~~---~~~~-~~dst~~~a~~~LAa~L 73 (555) T protein:vir:98 1 MAEQT-ERKLLLSRWGQLRTERESW--MSHWKEISDYLLPRAGRFFVQDRNRGEK---RHNN-ILDNTGTRALRVLAAGM 73 (555) T ss_pred CCCcc-cHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhCcccccccCCCCCcchh---cccc-cccccHHHHHHHHHHHH Confidence 87433 2223333322222223334 555666666678863221 111111111 1111 3344444455544 Q ss_pred hhhhhc-ccccc--ccC-------HHHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchH Q lcl|Aclame:pro 107 MGQVFS-RDPIR--QLP-------PALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVL 170 (535) Q Consensus 107 ~G~lF~-k~p~~--~~p-------~~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~a 170 (535) .+.+|. ..|=+ ++. ..++.+++.|.. ...+++.-+..+.++...+|.+-++++.+..+. T Consensus 74 ~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~----- 148 (555) T protein:vir:98 74 MAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAV----- 148 (555) T ss_pred HHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCce----- Confidence 444443 11111 111 123333333221 246788888889999999999999988543221 Q ss_pred HHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccc-----------------eeeEEEEEe Q lcl|Aclame:pro 171 EQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETT-----------------YVQQWRVLQ 231 (535) Q Consensus 171 d~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~-----------------~~~~~rvl~ 231 (535) -.+..|+..+. -....+ ...+.-|..++.+... ...|+.. .++.|-+.+ T Consensus 149 --------~rf~~~pl~~~---~v~~d~-~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~ 216 (555) T protein:vir:98 149 --------VYHHSLTAGEY---AIAADN-QGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIE 216 (555) T ss_pred --------EEEEEeeccee---EEeeCC-CCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEe Confidence 23445555554 233222 2233323322222111 1223211 112111112 Q ss_pred ecCCce----------EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 232 LNAEGN----------YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 232 l~~~g~----------y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) +..++. |.-..|....+ +..+..++|=+.+.+||+.|.-..+ ...|..|..+...-...+. T Consensus 217 pr~~~~~~~~~~~~~p~~s~~~~~~~d-------~~~vl~esgy~e~P~i~~Rw~~~~g--e~YGrgp~~~~lgD~k~L~ 287 (555) T protein:vir:98 217 PRADRDPSKRDDRNMAWKSVYFEPGAD-------ETRTLRESGYRSFRALCPRWALVGG--DIYGNSPAMEALGDVRQLQ 287 (555) T ss_pred eccCcCcCCCCccccceEEEEEEeccC-------CccccccCCcccCCceeeeeeecCC--CccccchHHHHHHHHHHHH Confidence 211110 11011111000 1112222332445555555554333 3445566544333333333 Q ss_pred hhHHHHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCCCC--Cc--cceeecCcchh--HHHHHHHHHH Q lcl|Aclame:pro 302 RNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLPQG--AT--AGILQITPNSV--PFEAMTHKES 374 (535) Q Consensus 302 ~~~sdl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp~~--~~--~~~~e~~~~~l--~~~~l~~~e~ 374 (535) ..+-..-..++.+..|.+.+. +.. ..++.+-++.....+.+ .+ .-.++.. ..+ ..+.++++++ T Consensus 288 ~l~~~~l~~~~~~~~pp~~v~~~~~---------~~~~~~~pgg~~~v~~g~~~d~~~~~~~~~-~d~~~~~~~i~~~~~ 357 (555) T protein:vir:98 288 HEQLRKAQAIDYKSNPPLQLPVSAK---------NQDISTVPGGLSYVDAAAPNGGIRTAFEVN-LDLSHLLADIVDVRE 357 (555) T ss_pred HHHHHHHHHHHHHhcCceeeccccc---------cccceeccccccccccCCCCcceecccccc-cchHHHHHHHHHHHH Confidence 333334455566666655543 211 11233333333222221 11 1112222 223 3456888888 Q ss_pred HHHHHhh-----hhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCCC-Ccee-EEEE Q lcl|Aclame:pro 375 QMIAMGA-----NLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGIVN-DETV-EYNL 442 (535) Q Consensus 375 qm~~lga-----~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~~~-~~~~-~v~~ 442 (535) ++...-. .+...+....||++...+..-....|.-+-.++. -.+++++.++.+ .|.... +..+ .-.+ T Consensus 358 rI~~af~~dlf~~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r-~g~lP~~P~~l~~~~i 436 (555) T protein:vir:98 358 RIKASFYADLFLMLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVE-ANILPPPPQEMQGVDL 436 (555) T ss_pred HHHHHhhcchhhhccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCchhhcCcee Confidence 8765321 1223455678999998766554555555554443 234455565554 222111 1111 1123 Q ss_pred ecccCCccCCH---HHHHH---HHHH----Hhc-----CCCCHHHHHHHH-HhCCCCCccCCHHHHHHHHHhchhhc--- Q lcl|Aclame:pro 443 NTDFPAARLTP---NERAE---LILE----WQQ-----GAITFKEMRAGL-RRAGVASEDDAKAETEGKATVEFIAK--- 503 (535) Q Consensus 443 n~df~~~~~d~---~~~~a---l~~l----~~~-----G~is~et~~~~L-~r~gvl~~~~~~eee~~~i~~e~~~~--- 503 (535) +-+|...-.-+ +.+.+ ++.. .+. ..|....+.+.+ ...||-..-...+|+.+.+.++...+ T Consensus 437 ~v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~ 516 (555) T protein:vir:98 437 NVEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQA 516 (555) T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHH Confidence 33343321111 11111 1111 121 124444444443 44666433334444444333321110 Q ss_pred ---ccC-------CCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 504 ---TAA-------AGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 504 ---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) .++ +-..+++..+..+.-...-|.=||-| T Consensus 517 ~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:98 517 AQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred HHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhccCC Confidence 000 01111111111111111111222222 No 181 >protein:vir:107822 Length: 555 # NCBI annotation: hypothetical protein predicted by GeneMark # Family: family:all:481 # MgeID: mge:1673 # MgeName: BIP-1 # Cross-refs: genbank:acc:NP_996631;genbank:gi:45580765;genbank:GeneID:2767898 Probab=91.28 E-value=0.017 Score=30.34 Aligned_cols=457 Identities=9% Similarity=0.032 Sum_probs=175.9 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCC-CCChhhHHHHHHHHhhhccchhHHHHHHHH---- Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVD-SRDEEQRRRYETYLQRAIFYNVTARTLDGM---- 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~-~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l---- 106 (535) |.+-. .+..+.+.....+--|.-+ +..|++...-.||....+ ..+..+... +..+ .|-+...+.++.+ T Consensus 1 M~~~~-~~~~l~~r~~~l~~~R~~~--e~~w~e~~~~~lP~~~~~~~~~~~~~~~---~~~~-~~dst~~~a~~~LAa~L 73 (555) T protein:vir:10 1 MAEQT-ERKLLLSRWGQLRTERESW--MSHWKEISDYLLPRAGRFFVQDRNRGEK---RHNN-ILDNTGTRALRVLAAGM 73 (555) T ss_pred CCCcc-cHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhCcccccccCCCCCcchh---cccc-cccccHHHHHHHHHHHH Confidence 87433 2223333322222223334 555666666678863221 111111111 1111 3344444455544 Q ss_pred hhhhhc-ccccc--ccC-------HHHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchH Q lcl|Aclame:pro 107 MGQVFS-RDPIR--QLP-------PALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVL 170 (535) Q Consensus 107 ~G~lF~-k~p~~--~~p-------~~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~a 170 (535) .+.+|. ..|=+ ++. ..++.+++.|.. ...+++.-+..+.++...+|.+-++++.+..+. T Consensus 74 ~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~----- 148 (555) T protein:vir:10 74 MAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAV----- 148 (555) T ss_pred HHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCce----- Confidence 444443 11111 111 123333333221 246788888889999999999999988543221 Q ss_pred HHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccc-----------------eeeEEEEEe Q lcl|Aclame:pro 171 EQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETT-----------------YVQQWRVLQ 231 (535) Q Consensus 171 d~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~-----------------~~~~~rvl~ 231 (535) -.+..|+..+. -....+ ...+.-|..++.+... ...|+.. .++.|-+.+ T Consensus 149 --------~rf~~~pl~~~---~v~~d~-~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~ 216 (555) T protein:vir:10 149 --------VYHHSLTAGEY---AIAADN-QGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIE 216 (555) T ss_pred --------EEEEEeeccee---EEeeCC-CCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEe Confidence 23445555554 233222 2233323322222111 1223211 112111112 Q ss_pred ecCCce----------EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 232 LNAEGN----------YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 232 l~~~g~----------y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) +..++. |.-..|....+ +..+..++|=+.+.+||+.|.-..+ ...|..|..+...-...+. T Consensus 217 pr~~~~~~~~~~~~~p~~s~~~~~~~d-------~~~vl~esgy~e~P~i~~Rw~~~~g--e~YGrgp~~~~lgD~k~L~ 287 (555) T protein:vir:10 217 PRADRDPSKRDDRNMAWKSVYFEPGAD-------ETRTLRESGYRSFRALCPRWALVGG--DIYGNSPAMEALGDVRQLQ 287 (555) T ss_pred eccCcCcCCCCccccceEEEEEEeccC-------CccccccCCcccCCceeeeeeecCC--CccccchHHHHHHHHHHHH Confidence 211110 11011111000 1112222332445555555554333 3445566544333333333 Q ss_pred hhHHHHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCCCC--Cc--cceeecCcchh--HHHHHHHHHH Q lcl|Aclame:pro 302 RNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLPQG--AT--AGILQITPNSV--PFEAMTHKES 374 (535) Q Consensus 302 ~~~sdl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp~~--~~--~~~~e~~~~~l--~~~~l~~~e~ 374 (535) ..+-..-..++.+..|.+.+. +.. ..++.+-++.....+.+ .+ .-.++.. ..+ ..+.++++++ T Consensus 288 ~l~~~~l~~~~~~~~pp~~v~~~~~---------~~~~~~~pgg~~~v~~g~~~d~~~~~~~~~-~d~~~~~~~i~~~~~ 357 (555) T protein:vir:10 288 HEQLRKAQAIDYKSNPPLQLPVSAK---------NQDISTVPGGLSYVDAAAPNGGIRTAFEVN-LDLSHLLADIVDVRE 357 (555) T ss_pred HHHHHHHHHHHHHhcCceeeccccc---------cccceeccccccccccCCCCcceecccccc-cchHHHHHHHHHHHH Confidence 333334455566666655543 211 11233333333222221 11 1112222 223 3456888888 Q ss_pred HHHHHhh-----hhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCCC-Ccee-EEEE Q lcl|Aclame:pro 375 QMIAMGA-----NLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGIVN-DETV-EYNL 442 (535) Q Consensus 375 qm~~lga-----~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~~~-~~~~-~v~~ 442 (535) ++...-. .+...+....||++...+..-....|.-+-.++. -.+++++.++.+ .|.... +..+ .-.+ T Consensus 358 rI~~af~~dlf~~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r-~g~lP~~P~~l~~~~i 436 (555) T protein:vir:10 358 RIKASFYADLFLMLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVE-ANILPPPPQEMQGVDL 436 (555) T ss_pred HHHHHhhcchhhhccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCchhhcCcee Confidence 8765321 1223455678999998766554555555554443 234455565554 222111 1111 1123 Q ss_pred ecccCCccCCH---HHHHH---HHHH----Hhc-----CCCCHHHHHHHH-HhCCCCCccCCHHHHHHHHHhchhhc--- Q lcl|Aclame:pro 443 NTDFPAARLTP---NERAE---LILE----WQQ-----GAITFKEMRAGL-RRAGVASEDDAKAETEGKATVEFIAK--- 503 (535) Q Consensus 443 n~df~~~~~d~---~~~~a---l~~l----~~~-----G~is~et~~~~L-~r~gvl~~~~~~eee~~~i~~e~~~~--- 503 (535) +-+|...-.-+ +.+.+ ++.. .+. ..|....+.+.+ ...||-..-...+|+.+.+.++...+ T Consensus 437 ~v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~ 516 (555) T protein:vir:10 437 NVEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQA 516 (555) T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHH Confidence 33343321111 11111 1111 121 124444444443 44666433334444444333321110 Q ss_pred ---ccC-------CCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 504 ---TAA-------AGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 504 ---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) .++ +-..+++..+..+.-...-|.=||-| T Consensus 517 ~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:10 517 AQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred HHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhccCC Confidence 000 01111111111111111111222222 No 182 >protein:vir:107404 Length: 555 # NCBI annotation: Bbp21 # Family: family:all:481 # MgeID: mge:1537 # MgeName: BPP-1 # Cross-refs: genbank:acc:NP_958690;genbank:gi:41179382;genbank:GeneID:2717198 Probab=91.28 E-value=0.017 Score=30.34 Aligned_cols=457 Identities=9% Similarity=0.032 Sum_probs=175.9 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCC-CCChhhHHHHHHHHhhhccchhHHHHHHHH---- Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVD-SRDEEQRRRYETYLQRAIFYNVTARTLDGM---- 106 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~-~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l---- 106 (535) |.+-. .+..+.+.....+--|.-+ +..|++...-.||....+ ..+..+... +..+ .|-+...+.++.+ T Consensus 1 M~~~~-~~~~l~~r~~~l~~~R~~~--e~~w~e~~~~~lP~~~~~~~~~~~~~~~---~~~~-~~dst~~~a~~~LAa~L 73 (555) T protein:vir:10 1 MAEQT-ERKLLLSRWGQLRTERESW--MSHWKEISDYLLPRAGRFFVQDRNRGEK---RHNN-ILDNTGTRALRVLAAGM 73 (555) T ss_pred CCCcc-cHHHHHHHHHHHHHHhhHH--HHHHHHHHHHhCcccccccCCCCCcchh---cccc-cccccHHHHHHHHHHHH Confidence 87433 2223333322222223334 555666666678863221 111111111 1111 3344444455544 Q ss_pred hhhhhc-ccccc--ccC-------HHHHHHHhccCC------CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchH Q lcl|Aclame:pro 107 MGQVFS-RDPIR--QLP-------PALEAIVEDIDG------EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVL 170 (535) Q Consensus 107 ~G~lF~-k~p~~--~~p-------~~l~~l~~d~d~------~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~a 170 (535) .+.+|. ..|=+ ++. ..++.+++.|.. ...+++.-+..+.++...+|.+-++++.+..+. T Consensus 74 ~~~ltpp~~~WF~l~~~d~~l~e~~~v~~~L~~ve~~~~~~l~~snf~~~~~~~~~~Lv~~G~a~l~~~~d~~~~----- 148 (555) T protein:vir:10 74 MAGMTSPARPWFRLTTSIPELDESAAVKAWLANVTRLMLMIFAKSNTYRALHSMYEELGAFGTASSIVLPDFDAV----- 148 (555) T ss_pred HHhhcCCCCcccccccCcccccchHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhCceEEEEecCCCce----- Confidence 444443 11111 111 123333333221 246788888889999999999999988543221 Q ss_pred HHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec--CCCcccc-----------------eeeEEEEEe Q lcl|Aclame:pro 171 EQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ--DDGFETT-----------------YVQQWRVLQ 231 (535) Q Consensus 171 d~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~--~d~f~~~-----------------~~~~~rvl~ 231 (535) -.+..|+..+. -....+ ...+.-|..++.+... ...|+.. .++.|-+.+ T Consensus 149 --------~rf~~~pl~~~---~v~~d~-~G~vd~i~r~~~~t~~ql~~~fg~~~l~~~~~~~~~~~~~~~~v~v~~~V~ 216 (555) T protein:vir:10 149 --------VYHHSLTAGEY---AIAADN-QGRVNTLYREFQITVAQMVREFGKDKCSTTVQSLFDRGALEQWVTVIHAIE 216 (555) T ss_pred --------EEEEEeeccee---EEeeCC-CCCEEEEEEEEeccHHHHHHhcCcccCCHHHHHHHhcCCCCceEEEEEEEe Confidence 23445555554 233222 2233323322222111 1223211 112111112 Q ss_pred ecCCce----------EEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 232 LNAEGN----------YQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 232 l~~~g~----------y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) +..++. |.-..|....+ +..+..++|=+.+.+||+.|.-..+ ...|..|..+...-...+. T Consensus 217 pr~~~~~~~~~~~~~p~~s~~~~~~~d-------~~~vl~esgy~e~P~i~~Rw~~~~g--e~YGrgp~~~~lgD~k~L~ 287 (555) T protein:vir:10 217 PRADRDPSKRDDRNMAWKSVYFEPGAD-------ETRTLRESGYRSFRALCPRWALVGG--DIYGNSPAMEALGDVRQLQ 287 (555) T ss_pred eccCcCcCCCCccccceEEEEEEeccC-------CccccccCCcccCCceeeeeeecCC--CccccchHHHHHHHHHHHH Confidence 211110 11011111000 1112222332445555555554333 3445566544333333333 Q ss_pred hhHHHHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCCCC--Cc--cceeecCcchh--HHHHHHHHHH Q lcl|Aclame:pro 302 RNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLPQG--AT--AGILQITPNSV--PFEAMTHKES 374 (535) Q Consensus 302 ~~~sdl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp~~--~~--~~~~e~~~~~l--~~~~l~~~e~ 374 (535) ..+-..-..++.+..|.+.+. +.. ..++.+-++.....+.+ .+ .-.++.. ..+ ..+.++++++ T Consensus 288 ~l~~~~l~~~~~~~~pp~~v~~~~~---------~~~~~~~pgg~~~v~~g~~~d~~~~~~~~~-~d~~~~~~~i~~~~~ 357 (555) T protein:vir:10 288 HEQLRKAQAIDYKSNPPLQLPVSAK---------NQDISTVPGGLSYVDAAAPNGGIRTAFEVN-LDLSHLLADIVDVRE 357 (555) T ss_pred HHHHHHHHHHHHHhcCceeeccccc---------cccceeccccccccccCCCCcceecccccc-cchHHHHHHHHHHHH Confidence 333334455566666655543 211 11233333333222221 11 1112222 223 3456888888 Q ss_pred HHHHHhh-----hhhcccccccchHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHcCCCCC-Ccee-EEEE Q lcl|Aclame:pro 375 QMIAMGA-----NLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS-----MAFRKALRWANQFQTGIVN-DETV-EYNL 442 (535) Q Consensus 375 qm~~lga-----~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~-----~a~~~~lr~~a~~~g~~~~-~~~~-~v~~ 442 (535) ++...-. .+...+....||++...+..-....|.-+-.++. -.+++++.++.+ .|.... +..+ .-.+ T Consensus 358 rI~~af~~dlf~~l~~~~~~~~TAtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~~il~r-~g~lP~~P~~l~~~~i 436 (555) T protein:vir:10 358 RIKASFYADLFLMLANGTNPQMTATEVAERHEEKLLMLGPVLERMHNEILDPLIELTFQRMVE-ANILPPPPQEMQGVDL 436 (555) T ss_pred HHHHHhhcchhhhccCCCCCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCchhhcCcee Confidence 8765321 1223455678999998766554555555554443 234455565554 222111 1111 1123 Q ss_pred ecccCCccCCH---HHHHH---HHHH----Hhc-----CCCCHHHHHHHH-HhCCCCCccCCHHHHHHHHHhchhhc--- Q lcl|Aclame:pro 443 NTDFPAARLTP---NERAE---LILE----WQQ-----GAITFKEMRAGL-RRAGVASEDDAKAETEGKATVEFIAK--- 503 (535) Q Consensus 443 n~df~~~~~d~---~~~~a---l~~l----~~~-----G~is~et~~~~L-~r~gvl~~~~~~eee~~~i~~e~~~~--- 503 (535) +-+|...-.-+ +.+.+ ++.. .+. ..|....+.+.+ ...||-..-...+|+.+.+.++...+ T Consensus 437 ~v~yis~La~aq~~~~~~~i~~~l~~i~~laq~~P~vld~id~d~~~~~~a~~~Gvp~~~irs~eev~~~r~qr~~~~q~ 516 (555) T protein:vir:10 437 NVEFVSMLAQAQRAIATNSVDRFVGNLGAVAGIKPEVLDKFDADRWADTYADMLGIDPELIVPGNQVALIRKQRADQQQA 516 (555) T ss_pred EEEeccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhcCCHHHHHHHHHHHhCCCccccCCHHHHHHHHHHHHHHHHH Confidence 33343321111 11111 1111 121 124444444443 44666433334444444333321110 Q ss_pred ---ccC-------CCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 504 ---TAA-------AGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 504 ---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) .++ +-..+++..+..+.-...-|.=||-| T Consensus 517 ~~~a~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (555) T protein:vir:10 517 AQQAALLNQGADTAAKLGSVDTSKQNALTDVTRAFSGYT 555 (555) T ss_pred HHHHHHHHHHHHHHHHhcccccCcchhHHHHHhhhccCC Confidence 000 01111111111111111111222222 No 183 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=90.82 E-value=0.019 Score=30.03 Aligned_cols=408 Identities=14% Similarity=0.094 Sum_probs=153.6 Q ss_pred CCcchhhhhhhhhcceecCCCCCC-CCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPP-TSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~ 79 (535) |+|.-..|. -+--+.| .+..+..=+.++-..+.+ |.. .+++... . ..++ + T Consensus 1 ~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~g~~~~---~-g~~v--------~ 51 (434) T protein:vir:43 1 MSKSLGKVL--------SSATSAPRSSLFGWGGKTIRLTDGAF------WSQ---FLGRESS---S-GKKV--------T 51 (434) T ss_pred Cccchhhhh--------hhcccccchhhhcccccccccCchHH------HHH---HhcCCcc---C-Ccee--------c Confidence 766543222 1111111 111111111121112221 221 2222100 0 0111 0 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhhh---cccc--c-cc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhC Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVF---SRDP--I-RQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFG 152 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF---~k~p--~-~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G 152 (535) .+..++.+..+-....+-+.++.+.| ++.. . .. ....+..++..-=....+-.+|.+.+....+.+| T Consensus 52 ------~~~al~~~~V~~~i~~ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~G 125 (434) T protein:vir:43 52 ------VDKAMKLSAVWACVRLISTSVAGLPLGVYERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWG 125 (434) T ss_pred ------hhhhhccHHHHHHHHHHHHhhhhCceEEEEEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcC Confidence 12223333333334444444454443 2221 1 11 2234555554323345778999999999999999 Q ss_pred cEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEee Q lcl|Aclame:pro 153 RAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQL 232 (535) Q Consensus 153 ~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l 232 (535) -+|++|... .|.++ .+..+.|..|- + ..+ +++ ...|++.. T Consensus 126 nay~~i~~~-~G~~~------------~L~~l~p~~v~-----------------~---~~~-~~g-----~~~y~~~~- 165 (434) T protein:vir:43 126 NAYAEIRRA-AGRPA------------ALDFLLPSRVD-----------------L---ECD-ENG-----RLKYFYTT- 165 (434) T ss_pred CeEEEEEeC-CCcEE------------EEEEEcCcceE-----------------E---EEc-CCC-----eEEEEEEe- Confidence 999999754 23211 34455555541 0 001 111 00111110 Q ss_pred cCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-H Q lcl|Aclame:pro 233 NAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-A 311 (535) Q Consensus 233 ~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l 311 (535) .+|.. +. .+. .. ++++.....+...|.+|+.-++.. +.......++... . T Consensus 166 -~~g~~--~~----------------~~~-------~e--Vih~~~~~~dg~~G~spi~~~~~~-i~~~~~~~~~~~~~f 216 (434) T protein:vir:43 166 -KKGAR--RE----------------IER-------TN--MLHIPAFTLDGRIGLSAIRYGVDV-FGSVMSAEDAANGTF 216 (434) T ss_pred -cCceE--EE----------------Ecc-------cc--EEEecCcCCCCccccCHHHHHHHH-HHHHHHHHHHHHHHH Confidence 01110 00 000 00 111211122335678887665543 3333333344333 3 Q ss_pred HHhcCceeEeeCCCCccchh--ccCc--ceeeec--CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhh Q lcl|Aclame:pro 312 FVAGQPTAFFTGLTKDWVED--VFKD--FKVHLG--SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGA 381 (535) Q Consensus 312 ~~~~~P~~~~~G~~~~~~~d--~~~~--~~i~iG--~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga 381 (535) ...+.|-.+++.-..-..+. ..+. +.+.-+ ....+.++.+.++.-+..++..... +..+....+++. +.. T Consensus 217 ~ng~~~~gil~~~~~l~~e~~~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp 296 (434) T protein:vir:43 217 KNGLLPTVAFKVDRILQPAQREEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPP 296 (434) T ss_pred hccCCcceEEecCCCCCHHHHHHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 44567877776422111110 0000 111111 2235557766665555544433321 222222333332 223 Q ss_pred hhhcccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHH Q lcl|Aclame:pro 382 NLLVKSGGNRTFGEAQQEE---ASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAE 458 (535) Q Consensus 382 ~~l~~~~~~~ta~~a~~~~---~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~a 458 (535) .++.... ..+...+..+. +--...|.-++.+++++++.-|---..+ ....|+++.+=.........+++ T Consensus 297 ~~lg~~~-~~~~~~s~~e~~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~-------~~~~~~fd~~~llr~d~~~r~~~ 368 (434) T protein:vir:43 297 WMIGQTD-KGSNWGTGLEQQMLAFLTFSISSITNQIQQCVNKRLLTAPER-------IRYYAEFSLEGFLKADSAGRAAW 368 (434) T ss_pred HHhCCCc-CCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhh-------cCceEEEechhhhccCHHHHHHH Confidence 3332211 11211122211 2224447777777777776543111111 11234444332222223345677 Q ss_pred HHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCC----CCcccccccccccCCCCCCC Q lcl|Aclame:pro 459 LILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAA----SGGTNKAKLNNGNGGGNQAG 534 (535) Q Consensus 459 l~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 534 (535) +.++++.|.++.-++++.+ |+ ++...-+ ++-. ..+..+-+.. .........++.++..+++= T Consensus 369 ~~~~~~~G~~T~NE~R~~~---gl-~p~~ggD----~~~~------~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 369 YSTMAQNGFMTRNEGRRKE---NL-PELPGGD----ILTV------QSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred HHHHHhCCCcCHHHHHHHh---CC-CCCCCCC----eEee------ccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 7889999999998887644 32 2211000 0000 0000010000 00000111111111111111 No 184 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=90.77 E-value=0.019 Score=30.01 Aligned_cols=389 Identities=14% Similarity=0.114 Sum_probs=154.8 Q ss_pred HHHHHHHHHHHhcChHHHHHH--HhhhCCCCCCCCCChhhH----------H-HHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 45 MLPKWRKIMDCLSGQEAIKAK--REEYLPMPSVDSRDEEQR----------R-RYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 45 ~~~~w~~i~d~~~G~~~~~~~--g~~YLP~~~~~~~~~E~~----------~-~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) |+-.|-.-.-.-+|...+..+ ..+=+..+. ...+.... . .-+..++.+..+-.+..+-+.++++.| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~ 79 (424) T protein:vir:45 1 MLYCWWAHWLWPEGGRVLLDALFRSKSLENPS-TPITGDAVDTDGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPL 79 (424) T ss_pred CeeEeeeceecCcchhHHHHhhccccCCCCCc-cccchhhhhhhccccCCceechHHhhccHHHHHHHHHHHHHHhhCce Confidence 111111000000233332211 000000000 00000000 0 012333343444445555555555554 Q ss_pred c---ccc-cc-cc-CHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEe Q lcl|Aclame:pro 112 S---RDP-IR-QL-PPALEAIVE-DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLV 184 (535) Q Consensus 112 ~---k~p-~~-~~-p~~l~~l~~-d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~ 184 (535) + +.. .. .+ ...+..++. .-+ ...+-.+|.+.+....+.+|.+|++|.....|.+ -.+..+ T Consensus 80 ~v~~~~~~~~~~~~~~~l~~lL~~~PN-~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~------------~~L~~l 146 (424) T protein:vir:45 80 HVMRRHKGKVEPARDHPAFYLVHDEPN-TWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEV------------ISLDCC 146 (424) T ss_pred EEEEecCCceeecccchHHHHHHhhcc-cCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcE------------EEEEEe Confidence 2 211 11 11 223444443 232 4578899999999999999999999987655542 145555 Q ss_pred chhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccC Q lcl|Aclame:pro 185 HPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGN 264 (535) Q Consensus 185 ~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~ 264 (535) .|..|. + ....++ ..|++ +. .... ..++.+ T Consensus 147 ~~~~v~-----------------i----~~~~~~------~~y~~-------------~~---~~~~-----~~~~~~-- 176 (424) T protein:vir:45 147 MPWETT-----------------L----MNTGGR------YTYGL-------------YN---EYGA-----FAISPD-- 176 (424) T ss_pred cCceEE-----------------E----EEcCCe------EEEEE-------------Ee---cCce-----EEECcc-- Confidence 554431 1 011110 11111 10 0000 001110 Q ss_pred CCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchh--ccCc--ceee Q lcl|Aclame:pro 265 GNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVED--VFKD--FKVH 339 (535) Q Consensus 265 ~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d--~~~~--~~i~ 339 (535) .+|-|- ....+...|.+|+.-++ -.+.......++... ....++|..+++--..-..+. .... .... T Consensus 177 ----eVih~r---~~~~d~~~G~spi~~~~-~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~ 248 (424) T protein:vir:45 177 ----DMIHIR---ALGNNQKMGLSPIMQHA-ETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESWGWLKDQWQKAS 248 (424) T ss_pred ----cEEEec---CcCCCCcccccHHHHHH-HHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHh Confidence 122221 12233456888887544 445555555555544 345677877777322111111 0000 0011 Q ss_pred ec----CcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 340 LG----SRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACT 411 (535) Q Consensus 340 iG----~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a 411 (535) -| +..++.++.+.++.-+..++..... +..+-...+++. +...++.......-++.......-.+..|.-+. T Consensus 249 ~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~ 328 (424) T protein:vir:45 249 QALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVRYTMMPWV 328 (424) T ss_pred ccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHH Confidence 12 2345667877777766665544321 222222233322 333344321111111111122223355677777 Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHH Q lcl|Aclame:pro 412 KNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAE 491 (535) Q Consensus 412 ~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~ee 491 (535) ..++++++.-|---.++. ....|+.+.+-.........+.++-+++++|.++..+.++.+ |+ ++...-++ T Consensus 329 ~~ie~~ln~kLl~~~e~~------~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~---gl-~pi~ggD~ 398 (424) T protein:vir:45 329 TNWEQELNRRLFTRAELA------AGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFE---DM-NPVEGLDE 398 (424) T ss_pred HHHHHHHHHhcCChhhhc------CCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCcce Confidence 777777765432222211 112344444333223234456777789999999988776543 32 22111111 Q ss_pred HHHHHHhchhhcccCCCcCC--CCCCCcccc Q lcl|Aclame:pro 492 TEGKATVEFIAKTAAAGKVG--DAASGGTNK 520 (535) Q Consensus 492 e~~~i~~e~~~~~~~~~~~~--~~~~~~~~~ 520 (535) ... . .+...+.+... ....+.+|+ T Consensus 399 ~~~----~-~n~~~~~~~~~~~~~~~~~~~~ 424 (424) T protein:vir:45 399 MLV----S-VNAANPAGDFKPPKNDEGKTNE 424 (424) T ss_pred eee----c-ccccccccccCCCCCCCCCCCC Confidence 000 0 00000000000 000011111 No 185 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=90.58 E-value=0.02 Score=29.88 Aligned_cols=377 Identities=12% Similarity=0.047 Sum_probs=138.7 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHh Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMM 107 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~ 107 (535) +|+.-==++...| |.+.+++ +-|-....+ ......=+.++..++.+..++-+-+.++ T Consensus 1 mg~~~~~~~~~~~-----------------~~~~~~~----~~~~~~~~~--~~~~~t~~~~~~~~~v~~cv~~Ia~~ia 57 (403) T protein:vir:10 1 MGFKSWITEKLNP-----------------GQRIIRD----MEPVSHRTN--RKPFTTGQAYSKIEILNRTANMVIDSAA 57 (403) T ss_pred Ccchhhhhhccch-----------------hhhhhhc----ccccccccC--CcccccHHHHHHHHHHHHHHHHHHHHHh Confidence 2211100111111 1222111 111111000 0000011333444443344444444444 Q ss_pred hhhhc---cccccc-----cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 108 GQVFS---RDPIRQ-----LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 108 G~lF~---k~p~~~-----~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) .+.|+ +..... ....+..++..-=....+-.+|.+.+....+.+|.+||+++. . . T Consensus 58 ~~p~~v~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~----~-------------~ 120 (403) T protein:vir:10 58 ECSYTVGDKYNIVTYANGVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG----T-------------S 120 (403) T ss_pred hCceeEeecccccccccccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC----c-------------e Confidence 44442 111000 122344555432335678899999999999999999998751 0 0 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccccccee Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHV 259 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~ 259 (535) +..+++..+ .+ ..+.+. .+....+. ........+. T Consensus 121 -l~~l~~~~~-----------------~v----~~~~~~------------------~~~~~~~~----~~~~~~~~ei- 155 (403) T protein:vir:10 121 -LYHVPAALM-----------------QV----EADANK------------------FIKKFIFN----NQINYRVDEI- 155 (403) T ss_pred -eEeecCcce-----------------EE----EEcCCc------------------eEEEEEec----Cceeecccce- Confidence 122222221 00 001111 00000000 0000000000 Q ss_pred eeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHH-HHHHHhcCceeEeeCCC---CccchhccCc Q lcl|Aclame:pro 260 PTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYE-EMAFVAGQPTAFFTGLT---KDWVEDVFKD 335 (535) Q Consensus 260 ~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~-~~l~~~~~P~~~~~G~~---~~~~~d~~~~ 335 (535) -.+....+.....+...|.+|+.-++..- ........+. ......+.|-.++..-. ++..+...+. T Consensus 156 ---------ih~~~~~~~~~~~~~~~G~s~i~~~~~~i-~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~ 225 (403) T protein:vir:10 156 ---------IFIKDNSYVCGTNSQISGQSRVATVIDSL-EKRSKMLNFKEKFLDNGTVIGLILETDEILNKKLRERKQEE 225 (403) T ss_pred ---------EEecccccccCCCCCcccccHHHHHHHHH-HHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHH Confidence 00111100001123345677776554433 2222332333 33344567777776421 1111100000 Q ss_pred -ceeeecC---cccccCCCCCccceeecCcchhHHHHHHHHH---HHHHH---HhhhhhcccccccchHHHHHHHHHHHH Q lcl|Aclame:pro 336 -FKVHLGS---RAIIPLPQGATAGILQITPNSVPFEAMTHKE---SQMIA---MGANLLVKSGGNRTFGEAQQEEASEQS 405 (535) Q Consensus 336 -~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e---~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S 405 (535) +...-|. ..++.++.+.++..+..+...-..+.++.+. .+++. +...++.... .....+... .--.. T Consensus 226 ~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~sn~e~~~~--~f~~~ 302 (403) T protein:vir:10 226 LQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDGGN-NANIRPNIE--LFYYM 302 (403) T ss_pred HHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC-CcCHHHHHH--HHHHH Confidence 0111232 2356677766666665433222223333332 23322 3344442211 111112221 12244 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEec-ccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC Q lcl|Aclame:pro 406 ILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNT-DFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVAS 484 (535) Q Consensus 406 ~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~-df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~ 484 (535) .|.-++..++++++..| +. .+.+..+. ++...+. ...++++-++++.|.++.-.+++.+ |+ + T Consensus 303 tl~P~~~~ie~~l~~~L-------~~-----~~~~d~~~~~~l~~D~-~~~~~~~~~~~~~G~lT~NE~R~~~---gl-~ 365 (403) T protein:vir:10 303 TIIPMLNKLTSSLTFFF-------GY-----KITPNTKEVAALTPDK-EAEAKHLTSLVNNGIITGNEARSEL---NL-E 365 (403) T ss_pred HHHHHHHHHHHHHHHhc-------Cc-----eeeeccchhhhcccCH-HHHHHHHHHHHhCCCcCHHHHHHHh---CC-C Confidence 56777777777777654 21 12222221 1111111 2345667789999999988777654 43 2 Q ss_pred ccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCC---CCCCCC Q lcl|Aclame:pro 485 EDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGG---GNQAGN 535 (535) Q Consensus 485 ~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 535 (535) +... +..++. ..+..+... ..+.+.|-|| +++.|| T Consensus 366 pi~~--~~~d~~------~~p~n~~~~--------~~~~~~~e~~~~~~~~~g~ 403 (403) T protein:vir:10 366 PLDD--EQMNKI------RIPANVAGS--------ATGVSGQEGGRPKGSTEGD 403 (403) T ss_pred CCCc--cccccc------ccccccccc--------cccCCCCcCCCCCCCcCCC Confidence 3211 111000 001111100 1111111122 223333 No 186 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=90.57 E-value=0.02 Score=29.88 Aligned_cols=333 Identities=10% Similarity=0.046 Sum_probs=126.4 Q ss_pred Hhhhhh---ccccccccCHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEE Q lcl|Aclame:pro 106 MMGQVF---SRDPIRQLPPALEAIVE-DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTI 181 (535) Q Consensus 106 l~G~lF---~k~p~~~~p~~l~~l~~-d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~ 181 (535) ++.+.| ++.-. .-..+..++. .-+ .-.+-.+|.+.+....+.+|-+++++.....|.+. -+ T Consensus 1 ia~lp~~~~~~~~~--~~~~l~~lL~~~PN-~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~------------~L 65 (348) T protein:vir:93 1 MASLPLKMYEDYKV--VNTEVSDLLTVSPN-NSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPS------------KL 65 (348) T ss_pred CcccceEeEecCcC--cccHHHHHHHhCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EE Confidence 333332 22211 1223444443 222 24577899999999999999999999876554321 23 Q ss_pred EEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeee Q lcl|Aclame:pro 182 TLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPT 261 (535) Q Consensus 182 ~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~ 261 (535) ..+.|..|- +.+ +.++. .-.|++.. ...... ..+ T Consensus 66 ~~l~~~~v~---------------~~~-----~~~~~-----~~~y~~~~----------------~~g~~~----~~~- 99 (348) T protein:vir:93 66 FLLNPDVVE---------------MLI-----ENQSR-----ELYYSIHA----------------ATGNKL----IVH- 99 (348) T ss_pred EEEcCCceE---------------EEE-----eCCCc-----EEEEEEEc----------------CCCeEE----EEc- Confidence 344443330 111 11100 00111100 000000 000 Q ss_pred ccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhcc---Cc-- Q lcl|Aclame:pro 262 DGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVF---KD-- 335 (535) Q Consensus 262 ~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~---~~-- 335 (535) -.. ++++ +....+...|.+|+.-++. .+........ ..+...+.|-.++.-.+....++.. .. T Consensus 100 ------~~e--iih~r~~~~~~~~~G~s~~~~~~~-~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~ 168 (348) T protein:vir:93 100 ------NMD--MLHFKHIVASNMVQGISPIDVLKN-TTDFDNAVRT--FNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDF 168 (348) T ss_pred ------ccc--EEEecCCCCCCceeeccHHHHHHH-HHHHHHHHHH--HHHHhcCCCceeEEecCCCCCHHHHHHHHHHH Confidence 011 1222 2223344567788765543 2332222222 2233333332222211111111100 00 Q ss_pred ceeeecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccc-ccccchHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 336 FKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKS-GGNRTFGEAQQEEASEQSILSAC 410 (535) Q Consensus 336 ~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~-~~~~ta~~a~~~~~~~~S~L~~~ 410 (535) ....-++..++.++.+.++.-+..++..+.. +..+....+++. +...++... .++.+..+. ....--...|.-+ T Consensus 169 ~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~e~-~~~~~~~~~l~P~ 247 (348) T protein:vir:93 169 KQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE-LNRFYLQHTLLPI 247 (348) T ss_pred HHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHH-HHHHHHHHHHHHH Confidence 0111234445667766666555544443321 222222223322 233344321 111111111 1112224456666 Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHH Q lcl|Aclame:pro 411 TKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKA 490 (535) Q Consensus 411 a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~e 490 (535) +..++++++..|---..+. ....|+++.+=.......+.+.++.+++++|.++.-.+++.+ |+- +-..-+ T Consensus 248 ~~~ie~~l~~~l~~~~~~~------~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~---g~~-p~~ggD 317 (348) T protein:vir:93 248 VKQYEEEFNRKLLTKTDRE------KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE---DLP-PVEGGD 317 (348) T ss_pred HHHHHHHHHHhhCCccccc------CcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHh---CCC-CCCCcC Confidence 6676666654332111111 112344333222222223456677889999999998888755 332 111001 Q ss_pred HHHHHHHhchhhcccCCCcCCCCCCCcccccccc Q lcl|Aclame:pro 491 ETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLN 524 (535) Q Consensus 491 ee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (535) +.. +...... .....+......|+++..+.. T Consensus 318 ~~~--~~~n~~~-~~~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 318 KPL--ISGDLYP-IDTPLELRKSLKGGDKNVNES 348 (348) T ss_pred eEe--ecccccc-cccchhhcccccCCCCCcCCC Confidence 000 0000000 000000000111111111111 No 187 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=89.86 E-value=0.024 Score=29.47 Aligned_cols=447 Identities=11% Similarity=0.080 Sum_probs=162.5 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) .-|-|+..| + |--+--...-+..+.+.|.++....-+=.+....-..-....+... ...-|-+++... T Consensus 4 ~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~---- 71 (547) T protein:vir:63 4 FESIRLAGV-N---KSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMS----ANPGFKTKPSIR---- 71 (547) T ss_pred hhhhhhhcC-C---ccccccccccccccchhhhhhhHHHHHHhhcccchhhhchhhheee----cccccccCCccC---- Confidence 111111110 0 0000011233556667777654321110000000000011111111 112244443221 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhc--cc-------c---------ccc-cC------HHHHHHHhccCCCC- Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFS--RD-------P---------IRQ-LP------PALEAIVEDIDGEG- 134 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~--k~-------p---------~~~-~p------~~l~~l~~d~d~~G- 134 (535) +-....+.+....-.++.+.+|+.++..+.. .+ + ... .+ ..++.|+.+..... T Consensus 72 -~~~~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~~pn~~~~ 150 (547) T protein:vir:63 72 -NNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIEKTGVDND 150 (547) T ss_pred -ChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHHhhCCCCC Confidence 1112233333222346777777766554421 10 0 001 11 12455666554433 Q ss_pred ---CCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEE Q lcl|Aclame:pro 135 ---VSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQEN 211 (535) Q Consensus 135 ---~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~ 211 (535) .+..+|++.+....|.+|.+++.+-....|.++ -|..++|..| .+ T Consensus 151 p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~------------~L~~l~p~~V-----------------~~--- 198 (547) T protein:vir:63 151 INRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMV------------RFVAKDPTTI-----------------FF--- 198 (547) T ss_pred CccchHHHHHHHHHHHHHhhCCEEEEEEECCCCcEE------------EEEEecCcee-----------------EE--- Confidence 267789999999999999999999776555321 2344455443 11 Q ss_pred EeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc--CCCcCCCCcch Q lcl|Aclame:pro 212 VLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP--LDNNADIDHPP 289 (535) Q Consensus 212 ~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~--~~~~~~~~~pp 289 (535) ..+.+++..+...+| ++.. .+..... .+.+ ..|=|. .++ .......|.|| T Consensus 199 -~~~~~g~~~~~~~~y------------~~~~----~~~~~~~----~~~~------eiih~r-~n~~~~~~~~~~G~Sp 250 (547) T protein:vir:63 199 -ATTADGKIPDNGNRF------------VQVI----DQKIVAT----FNAR------EMAFAV-RNPRSDIYATGYGYPE 250 (547) T ss_pred -EECCccccccCceEE------------EEEc----CCcEEEE----eccc------cEEEec-ccCCCCcccccccccH Confidence 111111100000011 0100 0000000 0000 001111 111 11223458899 Q ss_pred HHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEe--eCC---CCccchhccCc-ceeeecCcccc--cCCCCCccceeecC Q lcl|Aclame:pro 290 LLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFF--TGL---TKDWVEDVFKD-FKVHLGSRAII--PLPQGATAGILQIT 360 (535) Q Consensus 290 L~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~--~G~---~~~~~~d~~~~-~~i~iG~~~~~--~lp~~~~~~~~e~~ 360 (535) |..++. .+...+....+.... ...++|..++ .|- +++......+. ....-|..+.. .+..+.+++|.++. T Consensus 251 i~~~~~-~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~~~g~~~~~l~ 329 (547) T protein:vir:63 251 LEIALK-QFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMT 329 (547) T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEEcC Confidence 876653 333334444444443 3345777554 342 22111111000 01122332221 12223345555554 Q ss_pred cchhHHHHHHHH---HHHHHH---Hhhhhhcccc-------cccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 361 PNSVPFEAMTHK---ESQMIA---MGANLLVKSG-------GNRTFGEAQQEEA---SEQSILSACTKNVSMAFRKALRW 424 (535) Q Consensus 361 ~~~l~~~~l~~~---e~qm~~---lga~~l~~~~-------~~~ta~~a~~~~~---~~~S~L~~~a~~~~~a~~~~lr~ 424 (535) ...-..+.++.+ ..+++. +...++.... ...+.+.+.++.+ -....|.-+...++++++..|- T Consensus 330 ~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~- 408 (547) T protein:vir:63 330 PSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIV- 408 (547) T ss_pred CChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc- Confidence 433333333333 333332 2233332111 1112233333322 2345577777777777766441 Q ss_pred HHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC---ccCCHH----------- Q lcl|Aclame:pro 425 ANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVAS---EDDAKA----------- 490 (535) Q Consensus 425 ~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~---~~~~~e----------- 490 (535) .. . +..+.|.++ .... .+..+...+.+++.+|.++.-++++.+ |+-+ ..+..- T Consensus 409 -~~-~-----~~~~~~~f~--~~~~-~~~~~~~~~~~~~~~g~lT~NE~R~~~---gl~P~~egGD~~~~~~~~~~~~~~ 475 (547) T protein:vir:63 409 -AE-F-----GDKYTFQFV--GGDI-KSELESVKILAEKAKVAMTVNEVRKEL---NLPGDVIGGDIPLNGVIVQRIGQL 475 (547) T ss_pred -cc-c-----CCceEEEee--cccc-ccHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCceeeccccccccccc Confidence 11 1 123344433 2222 233444456778889999988887644 3211 111110 Q ss_pred -------HH--HHHHHh--chh---hcccCCCcC----CCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 491 -------ET--EGKATV--EFI---AKTAAAGKV----GDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 491 -------ee--~~~i~~--e~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) .+ +.++.. +.. ..+.+...+ .++..+.+...+...++..+.+.++ T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 538 (547) T protein:vir:63 476 MQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAGKQGMK 538 (547) T ss_pred ccccCCccccchhhccccccccCCCCCCCCCCCCCCcccCCCcCccccccCccccchhhhhcC Confidence 00 000000 000 000000000 0111111222222222233333333 No 188 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=89.07 E-value=0.028 Score=29.06 Aligned_cols=417 Identities=11% Similarity=0.064 Sum_probs=155.8 Q ss_pred CCcchh-------hhhhhhhcc--eecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCC Q lcl|Aclame:pro 1 MARKRT-------TIRRDVQSK--VLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLP 71 (535) Q Consensus 1 ~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP 71 (535) |.---| .-|++-+.+ +.=+=..+.+-++.. |... ....+..+.++... .+..|-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~---------~~~~----~~~~~~~~~~~~~~---~~~~~~~ 64 (441) T protein:vir:79 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQY---------NEDD----LQMMVQTLPGFQGT---KLRQYKD 64 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccC---------CCcc----hHHHHHHhcccCcc---cccccch Confidence 111111 011222211 110000011111100 0000 00111111111100 0111111 Q ss_pred CCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcc--ccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 72 MPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSR--DPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTM 149 (535) Q Consensus 72 ~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k--~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l 149 (535) ...++-+..+-.+..+-++++++.|+- .-.......+-.++..-=....+-.+|.+.+....+ T Consensus 65 ---------------~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~ll 129 (441) T protein:vir:79 65 ---------------IEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSAL 129 (441) T ss_pred ---------------hhhhccHHHHHHHHHHHHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHh Confidence 111232222334455555555554431 111122333444543222244677899999999999 Q ss_pred hhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEE Q lcl|Aclame:pro 150 GFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRV 229 (535) Q Consensus 150 ~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rv 229 (535) .+|-+|+++.....|.+. -+..++|..|. +..++++ ...|++ T Consensus 130 l~Gnay~~i~r~~~G~~~------------~L~~i~~~~v~---------------------v~~d~~g-----~~~~~~ 171 (441) T protein:vir:79 130 LTSHGYIEITRDKTGEPM------------NLTFRKTSEIE---------------------LKSDARG-----RLYYFH 171 (441) T ss_pred hcCCeEEEEEECCCCcEE------------EEEEEcCceeE---------------------EEECCCc-----cEEEEE Confidence 999999999876554321 35556665541 1111111 001111 Q ss_pred EeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 230 LQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 230 l~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) ...+..+....+ ..+. ..| +.+.....+...|.+||.-++. .+.......++.. T Consensus 172 ~~~~~~~~~~~~----------------~~~~-------~dv--ih~k~~~~dg~~G~spl~~~~~-~i~~~~~~~~~~~ 225 (441) T protein:vir:79 172 QRIDSNGNNIER----------------NVKF-------EDM--LDIKFYSLDGINGLSLLDTLSR-TIESDNNGKDFLN 225 (441) T ss_pred EEeccCCceeEE----------------EEcc-------ccE--EEeccCCCCCccccCHHHHHHH-HHHHHHHHHHHHH Confidence 111000000000 0000 011 1121112233467888776653 4455555555554 Q ss_pred HH-HHhcCceeEee--CC-CCccchhccCc--ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH- Q lcl|Aclame:pro 310 MA-FVAGQPTAFFT--GL-TKDWVEDVFKD--FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA- 378 (535) Q Consensus 310 ~l-~~~~~P~~~~~--G~-~~~~~~d~~~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~- 378 (535) .+ ...+.|..++. |. .++...+.... ....-|. ..++.++.+.++.-+..++..+.. +..+....+++. T Consensus 226 ~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~ 305 (441) T protein:vir:79 226 NFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGV 305 (441) T ss_pred HHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHH Confidence 43 45567887776 22 11111111010 0111232 235667777666666555544322 222222233332 Q ss_pred --HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHH Q lcl|Aclame:pro 379 --MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNER 456 (535) Q Consensus 379 --lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~ 456 (535) +...++.....+.+..+..... .+ .|.-++.+++++++..| ..++ ....|+++.+=.........+ T Consensus 306 fgVPp~~lg~~~~~~s~~q~~~~~--~~-tl~P~~~~ie~eln~kl--~~~~-------~~~~~~fd~~~llr~D~~~~~ 373 (441) T protein:vir:79 306 FGIPLHKFGIETANMSITDANLDY--LS-TLKPYITCVCAELNFKF--NDEY-------VNREFKFDTTEIRVVDEKTQA 373 (441) T ss_pred hCCCHHHcCCCCCCccHHHHHHHH--HH-HHHHHHHHHHHHHhhhc--cccc-------cCceEEeechhhhccCHHHHH Confidence 3334443222222222322222 22 46677777777776553 1111 122344443322222223456 Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 457 AELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 457 ~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) .++..++++|.++..+.++.+ |+ ++-..-+...-.. .....+-+..+.-+....+...+++-||.... T Consensus 374 ~~~~~~i~~G~~T~NE~R~~~---gl-~Pi~ggd~~~~~~-----~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 374 EIDKINIDSGKMNIDEIRQRD---GL-APIPGGNGSIHRV-----DLNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred HHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCcceEee-----cccccccccccccccccccccccccCCCCCCC Confidence 667788999999998877643 33 2211111100000 00000000000000011111112222222222 No 189 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=89.07 E-value=0.028 Score=29.06 Aligned_cols=417 Identities=11% Similarity=0.064 Sum_probs=155.8 Q ss_pred CCcchh-------hhhhhhhcc--eecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCC Q lcl|Aclame:pro 1 MARKRT-------TIRRDVQSK--VLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLP 71 (535) Q Consensus 1 ~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP 71 (535) |.---| .-|++-+.+ +.=+=..+.+-++.. |... ....+..+.++... .+..|-+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~e~R~~~~---------~~~~----~~~~~~~~~~~~~~---~~~~~~~ 64 (441) T protein:vir:94 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQY---------NEDD----LQMMVQTLPGFQGT---KLRQYKD 64 (441) T ss_pred CccccCccccccccccccchhhhhccccccccccccccC---------CCcc----hHHHHHHhcccCcc---cccccch Confidence 111111 011222211 110000011111100 0000 00111111111100 0111111 Q ss_pred CCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhcc--ccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 72 MPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSR--DPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTM 149 (535) Q Consensus 72 ~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k--~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l 149 (535) ...++-+..+-.+..+-++++++.|+- .-.......+-.++..-=....+-.+|.+.+....+ T Consensus 65 ---------------~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~ll 129 (441) T protein:vir:94 65 ---------------IEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSAL 129 (441) T ss_pred ---------------hhhhccHHHHHHHHHHHHhhccCceeeecCccccccchHHHHHhcccCcCCCHHHHHHHHHHHHh Confidence 111232222334455555555554431 111122333444543222244677899999999999 Q ss_pred hhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEE Q lcl|Aclame:pro 150 GFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRV 229 (535) Q Consensus 150 ~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rv 229 (535) .+|-+|+++.....|.+. -+..++|..|. +..++++ ...|++ T Consensus 130 l~Gnay~~i~r~~~G~~~------------~L~~i~~~~v~---------------------v~~d~~g-----~~~~~~ 171 (441) T protein:vir:94 130 LTSHGYIEITRDKTGEPM------------NLTFRKTSEIE---------------------LKSDARG-----RLYYFH 171 (441) T ss_pred hcCCeEEEEEECCCCcEE------------EEEEEcCceeE---------------------EEECCCc-----cEEEEE Confidence 999999999876554321 35556665541 1111111 001111 Q ss_pred EeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 230 LQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 230 l~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) ...+..+....+ ..+. ..| +.+.....+...|.+||.-++. .+.......++.. T Consensus 172 ~~~~~~~~~~~~----------------~~~~-------~dv--ih~k~~~~dg~~G~spl~~~~~-~i~~~~~~~~~~~ 225 (441) T protein:vir:94 172 QRIDSNGNNIER----------------NVKF-------EDM--LDIKFYSLDGINGLSLLDTLSR-TIESDNNGKDFLN 225 (441) T ss_pred EEeccCCceeEE----------------EEcc-------ccE--EEeccCCCCCccccCHHHHHHH-HHHHHHHHHHHHH Confidence 111000000000 0000 011 1121112233467888776653 4455555555554 Q ss_pred HH-HHhcCceeEee--CC-CCccchhccCc--ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH- Q lcl|Aclame:pro 310 MA-FVAGQPTAFFT--GL-TKDWVEDVFKD--FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA- 378 (535) Q Consensus 310 ~l-~~~~~P~~~~~--G~-~~~~~~d~~~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~- 378 (535) .+ ...+.|..++. |. .++...+.... ....-|. ..++.++.+.++.-+..++..+.. +..+....+++. T Consensus 226 ~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~ 305 (441) T protein:vir:94 226 NFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGV 305 (441) T ss_pred HHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHH Confidence 43 45567887776 22 11111111010 0111232 235667777666666555544322 222222233332 Q ss_pred --HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHH Q lcl|Aclame:pro 379 --MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNER 456 (535) Q Consensus 379 --lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~ 456 (535) +...++.....+.+..+..... .+ .|.-++.+++++++..| ..++ ....|+++.+=.........+ T Consensus 306 fgVPp~~lg~~~~~~s~~q~~~~~--~~-tl~P~~~~ie~eln~kl--~~~~-------~~~~~~fd~~~llr~D~~~~~ 373 (441) T protein:vir:94 306 FGIPLHKFGIETANMSITDANLDY--LS-TLKPYITCVCAELNFKF--NDEY-------VNREFKFDTTEIRVVDEKTQA 373 (441) T ss_pred hCCCHHHcCCCCCCccHHHHHHHH--HH-HHHHHHHHHHHHHhhhc--cccc-------cCceEEeechhhhccCHHHHH Confidence 3334443222222222322222 22 46677777777776553 1111 122344443322222223456 Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 457 AELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 457 ~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) .++..++++|.++..+.++.+ |+ ++-..-+...-.. .....+-+..+.-+....+...+++-||.... T Consensus 374 ~~~~~~i~~G~~T~NE~R~~~---gl-~Pi~ggd~~~~~~-----~~n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 374 EIDKINIDSGKMNIDEIRQRD---GL-APIPGGNGSIHRV-----DLNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred HHHHHHHhCCCcCHHHHHHHh---CC-CCCCCCCcceEee-----cccccccccccccccccccccccccCCCCCCC Confidence 667788999999998877643 33 2211111100000 00000000000000011111112222222222 No 190 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=89.05 E-value=0.029 Score=29.05 Aligned_cols=397 Identities=11% Similarity=0.072 Sum_probs=151.0 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |-..+-.-+ .+.+ ..--..|..+ ++|..........++ .. T Consensus 1 m~~~~~~~~---------------------------~~~~--~s~~~~w~~~---~~~~~~~~~~~g~~v--------t~ 40 (421) T protein:vir:10 1 MFIPQMFEG---------------------------KKRS--VSGGGFWEAM---LGGVRSSHSKAGVMI--------TP 40 (421) T ss_pred CCCcchhcc---------------------------cccc--cCcchhhHHH---hhhhccCcccCCcee--------ch Confidence 111110000 0000 0111233332 222111110011111 11 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---cc--cccc-c-CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCc Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RD--PIRQ-L-PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGR 153 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~--p~~~-~-p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~ 153 (535) +..++-+..+-....+-+.++++.|+ +. .... + ...+..++..-=....+-.+|.+.+....+.+|. T Consensus 41 ------~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn 114 (421) T protein:vir:10 41 ------ETALALSAVRACVTLLAESVAQLPVELYRRDKNGGRQRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGN 114 (421) T ss_pred ------HHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCceeecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCC Confidence 12233333344445555555555543 21 1111 1 2234444432122457788999999999999999 Q ss_pred EEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeec Q lcl|Aclame:pro 154 AAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLN 233 (535) Q Consensus 154 ~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~ 233 (535) +|+++.....|.+ -.+..++|..|. +...+++ ...|++ T Consensus 115 a~~~i~r~~~G~~------------~~L~~l~~~~v~---------------------v~~~~~g-----~~~y~~---- 152 (421) T protein:vir:10 115 CYSIIDRDGKGYP------------KELIPINPKKVI---------------------VLKGPDG-----MPYYEI---- 152 (421) T ss_pred eEEEEEEcCCCcE------------EEEEEecCceEE---------------------EEECCCc-----eEEEEE---- Confidence 9999987665432 134455555441 0011111 001111 Q ss_pred CCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-H Q lcl|Aclame:pro 234 AEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-F 312 (535) Q Consensus 234 ~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~ 312 (535) ...+. .++. ..| +++.....+...|.+|+.-++ -.+.......++...+ . T Consensus 153 ------------~~~g~-------~~~~-------~ei--ih~~~~~~d~~~G~spi~~~~-~~i~~~~~~~~~~~~~f~ 203 (421) T protein:vir:10 153 ------------PEIGE-------TLPM-------RMM--HHVKVFSLDGYIGSSPIQTNA-DVLGLNLAVEEHASAVFR 203 (421) T ss_pred ------------cCCCc-------EEch-------hhE--EEecCcCCCCcccccHHHHHH-HHHHHHHHHHHHHHHHHh Confidence 00010 1111 111 112112233456888887554 3444444444444443 4 Q ss_pred HhcCceeEeeCCC---Cccchhc---cCc--ceeeecC---cccccCCCCCccceeecCcchhH-HHHHHHHHHHHHH-- Q lcl|Aclame:pro 313 VAGQPTAFFTGLT---KDWVEDV---FKD--FKVHLGS---RAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIA-- 378 (535) Q Consensus 313 ~~~~P~~~~~G~~---~~~~~d~---~~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~-- 378 (535) ..+.|-.+++--. ....++. ... ....-|. ..++.++.+.++.-+..++.... .+..+-...+++. T Consensus 204 ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~f 283 (421) T protein:vir:10 204 RGATMSGVIERPKEAPAIKSQEKIDQLLAKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLY 283 (421) T ss_pred cCCCccEEEEecCccCccCCHHHHHHHHHHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHh Confidence 4567877776311 1001110 000 0111222 23566777666655555444433 1333333334433 Q ss_pred -HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHH Q lcl|Aclame:pro 379 -MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERA 457 (535) Q Consensus 379 -lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~ 457 (535) +...++........++.......--...|.-++..++++++..|=.-.. .....|+++.+=.........+. T Consensus 284 gVPp~~lg~~~~~t~sn~e~~~~~f~~~tl~P~~~~ie~~ln~kL~~~~~-------~~~~~v~fd~~~l~~~d~~~~~~ 356 (421) T protein:vir:10 284 KIPPHMVQMLAKATNNNIEHQGLQFVMYTLLAWLKRHEGALQRDLLLPSE-------RRDLYIEFNVSGLLRGDQKSRYE 356 (421) T ss_pred CCCHHHcCCCcCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccc-------cCCeEEEEechhhhccCHHHHHH Confidence 2333332211111111111111223445666777777766653211110 11233444443222222234566 Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhccc-CCCcCCCCCCCcccccccccccCCC Q lcl|Aclame:pro 458 ELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTA-AAGKVGDAASGGTNKAKLNNGNGGG 530 (535) Q Consensus 458 al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (535) ++-+++++|.++.-.+++.+ |. ++...-++.. +......... ..+...+.+....+ .++-.+-+ T Consensus 357 ~~~~~~~~G~~T~NE~R~~~---gl-~p~~ggD~~~--~~~n~~~~~~~~~~~~~~~~~~~~e---~d~~~~~~ 421 (421) T protein:vir:10 357 SYALGRQWGWLSVNDIRRME---NL-PPIAGGDKYL--TPLNMVDSAQIIPGDKKPTAQQMAE---IDTILSRT 421 (421) T ss_pred HHHHHHhCCCcCHHHHHHHh---CC-CCCCCcceee--eccccccccccccCCCCcccccCcc---cccccccC Confidence 77789999999998887654 32 2211111100 0000000000 00000000000000 00000000 No 191 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=88.23 E-value=0.034 Score=28.66 Aligned_cols=408 Identities=13% Similarity=0.079 Sum_probs=147.9 Q ss_pred CCC-----CCccCHHHHHHHHHHHHHHHHhcChHHHH-HHHhhhCCCCCCCCCChhhHHHHHHHHhhhcc-chhHHHHHH Q lcl|Aclame:pro 32 LPN-----VGYQRVEFGEMLPKWRKIMDCLSGQEAIK-AKREEYLPMPSVDSRDEEQRRRYETYLQRAIF-YNVTARTLD 104 (535) Q Consensus 32 M~~-----v~~~hp~y~~~~~~w~~i~d~~~G~~~~~-~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~-~n~~~~tv~ 104 (535) |.+ ++...|. +.... -.+...+. .....|+ .+| .+ +.. +.+... .++....|+ T Consensus 1 ~~~~~~~i~s~~~~~--~i~~~-------~~~s~~~~~~~~~~~~-~pp---~~------~~~-la~l~~~n~~v~scI~ 60 (542) T protein:vir:41 1 MFNYHLSIRSLEKYK--AIKRE-------EVESQALGETRFEEYV-EPK---VN------PLV-LLSLLQVNPYHASACS 60 (542) T ss_pred Cccccccccccccch--hhhhc-------cccccccccccCCccc-cCC---CC------HHH-HHHHHhhcHHHHHHHH Confidence 543 1111111 11100 00111110 0111222 111 11 222 222222 345567777 Q ss_pred HHhhhhhccccccc--cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEE Q lcl|Aclame:pro 105 GMMGQVFSRDPIRQ--LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTIT 182 (535) Q Consensus 105 ~l~G~lF~k~p~~~--~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~ 182 (535) .++..+.+-+..+. -...+..++.|. ..+..+|.+.+....+.+|-+|+.+.....|.+. -+. T Consensus 61 ~ia~~IA~l~~~~~~~~~~~l~~~lpN~---~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~------------~L~ 125 (542) T protein:vir:41 61 IKANDIIRTGYILEGDDEGVVDEFIRAC---KPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPI------------RFE 125 (542) T ss_pred HHHHHHhhCceeeecccchhhhhhcCCC---CCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEE------------EEE Confidence 77776655554442 122344455554 3678999999999999999999999877655421 345 Q ss_pred EechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeec Q lcl|Aclame:pro 183 LVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTD 262 (535) Q Consensus 183 ~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~ 262 (535) .++|..|. .... .+.| +.+.-+....| ...+..... .....+... T Consensus 126 ~l~~~~v~---v~~d------------------~~~~--------~~~~~~~~~~~-~~~y~~~~~--~~~~~g~~~--- 170 (542) T protein:vir:41 126 YIPSHTIR---VHKD------------------GSRY--------RQTWDGVNITH-FKDYRYEGE--INPETGEDQ--- 170 (542) T ss_pred EEcCcceE---EEEc------------------CCee--------EeeecCCccee-EEeeccccc--ccccccccc--- Confidence 55555441 1111 1110 00000000011 011110000 000000000 Q ss_pred cCCCccceeEEEEec-cCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEee--CCCCccc-hhc----- Q lcl|Aclame:pro 263 GNGNPFKEIPFQFIG-PLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFT--GLTKDWV-EDV----- 332 (535) Q Consensus 263 ~~~~~l~~IP~v~~~-~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~--G~~~~~~-~d~----- 332 (535) ...+-.. ++++. ....+...|.||+..++. .+........+... ....+.|..+++ |...+.. .+. T Consensus 171 -~~~~~~e--IiHir~~~~~~~~~Glspi~~~~~-~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~de~~~~~~~~~e 246 (542) T protein:vir:41 171 -DSVGANE--LVFIHIPSPVCSYYGVPRYVSAAP-AILAMQKIDEYNYAFFDNYTIPSYVITVTGEFEDELEEDPDGNPT 246 (542) T ss_pred -cccCccc--EEEecCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCccEEEEeCCccccccccccccCHH Confidence 0001111 22232 223445678888876553 33333333334333 344566765553 3211100 000 Q ss_pred -----cC--cceeee--c-CcccccC--CC--CCccceeecCcchhHHHHH---HHHHHHHHH---Hhhhhhccc---cc Q lcl|Aclame:pro 333 -----FK--DFKVHL--G-SRAIIPL--PQ--GATAGILQITPNSVPFEAM---THKESQMIA---MGANLLVKS---GG 389 (535) Q Consensus 333 -----~~--~~~i~i--G-~~~~~~l--p~--~~~~~~~e~~~~~l~~~~l---~~~e~qm~~---lga~~l~~~---~~ 389 (535) .. ...+.- + ....+.+ |. +.+..|..++-..-..+.+ +....+++. +...++... +. T Consensus 247 ~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~ 326 (542) T protein:vir:41 247 GRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMIDPYRLGIADTGPL 326 (542) T ss_pred HHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCcCCCccc Confidence 00 000110 0 1122222 22 2233444433222222222 333344433 223333211 11 Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCC Q lcl|Aclame:pro 390 NRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAIT 469 (535) Q Consensus 390 ~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is 469 (535) +.+..+ .....-....|.-+...+++++++.|- .. . +..+.|+++.+-. +......++-.++++|.++ T Consensus 327 n~sn~E-q~~~~f~~~tL~P~~~~ie~~ln~~L~--~~-----~-~~~~~~~f~~~~l---l~~d~~~~~~~~v~~GilT 394 (542) T protein:vir:41 327 GGNFAE-VTRRTYYESVVRPQQNIISSILTDFFQ--VK-----F-NPKTRFKFNDETL---LESDSVRNCALLVQSGVLT 394 (542) T ss_pred ccccHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc--cc-----c-CCceEEEecchhh---cchHHHHHHHHHHhCCCCC Confidence 111111 112223345566777777777765331 11 1 1223444443211 1223455566789999999 Q ss_pred HHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccc-cccccccCCCC---CCC----------- Q lcl|Aclame:pro 470 FKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNK-AKLNNGNGGGN---QAG----------- 534 (535) Q Consensus 470 ~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~----------- 534 (535) ...++++|. ++ ++.++. .. ..... ...+....+.+.+.+.. +..++-+.++| +-+ T Consensus 395 ~NE~Re~L~--g~-~pgdd~--~l--~p~~~---~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~ 464 (542) T protein:vir:41 395 PAEARERLF--GL-DGGPDI--FM--VPSKG---AAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSKLSAEEKKK 464 (542) T ss_pred HHHHHHhhC--CC-CCCCcc--cc--ccccc---cccccccCCcCCCCCchhhhhhcccccCccccccccccccchhhcc Confidence 888876552 32 222211 00 00000 00000000011110000 00011111111 111 Q ss_pred --------C Q lcl|Aclame:pro 535 --------N 535 (535) Q Consensus 535 --------~ 535 (535) + T Consensus 465 ~~~~~~~~~ 473 (542) T protein:vir:41 465 KIDESLAEF 473 (542) T ss_pred cccchhhhh Confidence 1 No 192 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=87.31 E-value=0.04 Score=28.27 Aligned_cols=407 Identities=11% Similarity=0.072 Sum_probs=149.0 Q ss_pred CC--CCCccCHHHHHHHHHHH---------HH--HHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHH--HHHHhhhccc Q lcl|Aclame:pro 32 LP--NVGYQRVEFGEMLPKWR---------KI--MDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRY--ETYLQRAIFY 96 (535) Q Consensus 32 M~--~v~~~hp~y~~~~~~w~---------~i--~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y--~~rl~rA~~~ 96 (535) |- |.+-..-++.....-=+ +. |+.-...... ..-...||-..+... ..| ...++.+..+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~e~r~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~al~~~~V~ 74 (441) T protein:vir:98 1 MHWYNTDCYFVDFKSRKQSRKELVVVGIFYKNEKRDLQYNEDDL-QMMVQTLPGFQGTKL-----RQYKDIEAIRHSDIF 74 (441) T ss_pred CceecCccceeccccccchhhhhhccccccccccccccCCCcch-HHHHHHhhcccccCc-----cccchhhhhccHHHH Confidence 32 11100011111100000 00 0000000000 000000111000000 001 1112222222 Q ss_pred hhHHHHHHHHhhhhhccc--cccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHh Q lcl|Aclame:pro 97 NVTARTLDGMMGQVFSRD--PIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKL 174 (535) Q Consensus 97 n~~~~tv~~l~G~lF~k~--p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~ 174 (535) -.+..+-+.++++.|+-. -.......+-.++..-=....+-.+|.+.+....+.+|.+|+++.....|.+ T Consensus 75 acv~~Ia~~iA~lpl~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~-------- 146 (441) T protein:vir:98 75 TAVMMIASDLARMPIRVTVNGQINYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEP-------- 146 (441) T ss_pred HHHHHHHHhhccCceEEecCCcccccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcE-------- Confidence 334444444444433311 1112223344444322224567889999999999999999999987655432 Q ss_pred ccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccc Q lcl|Aclame:pro 175 GLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYS 254 (535) Q Consensus 175 ~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~ 254 (535) --+..++|..|. +..++++ . ..|++...+..+ ... T Consensus 147 ----~~L~~i~~~~v~---------------------v~~~~~g---~--~~~~~~~~~~~~-------------~~~-- 181 (441) T protein:vir:98 147 ----MNLTFRKTSEIE---------------------LKLDARG---R--LYYFHQRIDSNG-------------NNI-- 181 (441) T ss_pred ----EEEEEEcCceeE---------------------EEECCCC---c--EEEEEEEeccCc-------------cee-- Confidence 135566665541 0011111 0 001100000000 000 Q ss_pred ccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEee--CC-CCccch Q lcl|Aclame:pro 255 YSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFT--GL-TKDWVE 330 (535) Q Consensus 255 ~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~--G~-~~~~~~ 330 (535) ....+. .. ++.+.....+...|.+|+.-++. .+.......++... ....+.|..+++ +. .++... T Consensus 182 -~~~~~~-------~d--viHir~~~~dg~~G~spi~~~~~-~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~ 250 (441) T protein:vir:98 182 -ERNVKF-------ED--MLDIKFYSLDGINGLSLLDTLSR-TIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKAR 250 (441) T ss_pred -eEEEcc-------cc--EEEeccCCCCCccccCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHH Confidence 000000 00 11121112233567888766543 44444444444443 344567777765 22 111111 Q ss_pred hccCc--ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHH Q lcl|Aclame:pro 331 DVFKD--FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEA 401 (535) Q Consensus 331 d~~~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~ 401 (535) +.... ....-|. ..++.++.+.++..+..++..+.. +..+....+++. +...++.....+.+..+..+.. T Consensus 251 ~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~s~~q~~~~y- 329 (441) T protein:vir:98 251 DRAREEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETANMSITDANLDY- 329 (441) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCCCccHHHHHHHH- Confidence 11110 0111232 235667777766666555544321 222222233332 3344443222222222332222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCC Q lcl|Aclame:pro 402 SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAG 481 (535) Q Consensus 402 ~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~g 481 (535) .+ .|.-+..+++++++..| .... ....|+++.+=.........+.++-.++++|.++..++++.+ | T Consensus 330 -~~-tl~P~~~~ie~~ln~~L-------~~~~--~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~---g 395 (441) T protein:vir:98 330 -LS-TLKPYITCVCAELNFKF-------NDEY--VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRD---G 395 (441) T ss_pred -HH-HHHHHHHHHHHHHHhhc-------cccc--cCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---C Confidence 22 46677777777776543 1111 122344443322222234456677789999999998777544 3 Q ss_pred CCCccCCHHHHHHHHHhchhhcccCCCcCCC---CCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 482 VASEDDAKAETEGKATVEFIAKTAAAGKVGD---AASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 482 vl~~~~~~eee~~~i~~e~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) + ++-..-++..-.+ ..++.+-+ .-+-...+...++.-||. .| T Consensus 396 l-~pi~gGd~~~~~~--------~~n~~~~~~~~~~q~~~~~~~~~~~kgGe---~n 440 (441) T protein:vir:98 396 L-APIPGGNGSIHRV--------DLNHVNIELVDEYQMNKSRATDKKLKGGE---EN 440 (441) T ss_pred C-CCCCCCCcceEee--------cccccccccccccccccccccccccCCCC---CC Confidence 2 2211111000000 00111100 000000001111111221 11 No 193 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=87.01 E-value=0.042 Score=28.15 Aligned_cols=392 Identities=12% Similarity=0.060 Sum_probs=154.5 Q ss_pred eecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhcc Q lcl|Aclame:pro 16 VLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIF 95 (535) Q Consensus 16 ~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~ 95 (535) ++.-. .+.+..+.. .+.. ..| +.++++|... ....++ + .+..++.+.. T Consensus 1 ~~~~r--~~~~~~~~~-------~~~~----~~~--~~~~~g~~~s---~~~~~v--------t------~~~al~~~~v 48 (419) T protein:vir:14 1 MFFSR--QLLSNLGQT-------QMSA----GGW--VSALLGSSRS---DSGQVV--------T------PASALALTVL 48 (419) T ss_pred Ccccc--ccccccccc-------ccCc----chh--hHHhhcCCCc---cCCccc--------c------hHHhhccHHH Confidence 11110 001111100 0000 111 1123322110 001111 1 1223445555 Q ss_pred chhHHHHHHHHhhhhhc---cccc--cc-cCHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccc Q lcl|Aclame:pro 96 YNVTARTLDGMMGQVFS---RDPI--RQ-LPPALEAIVE-DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVT 168 (535) Q Consensus 96 ~n~~~~tv~~l~G~lF~---k~p~--~~-~p~~l~~l~~-d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t 168 (535) +..+..+-+.++++.|. +... .. ....+..++. .-+ ...+-.+|.+.+....+.+|.+++++.....|.+. T Consensus 49 ~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN-~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~- 126 (419) T protein:vir:14 49 QNCVTLLAESIAQLPIELYERSGEDRKPATDHPLYSILKYEPN-SWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQ- 126 (419) T ss_pred HHHHHHHHHhhccCceEEEEecCCccccccccHHHHHHHhhcc-cCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE- Confidence 56666666666666553 1111 11 1233444443 222 34678899999999999999999999876554321 Q ss_pred hHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeecc Q lcl|Aclame:pro 169 VLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQ 248 (535) Q Consensus 169 ~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~ 248 (535) -+..++|..|- + ....+ +.+..++. .. T Consensus 127 -----------~l~pl~~~~v~-----------------v----~~~~~------------------~~~~y~~~---~~ 153 (419) T protein:vir:14 127 -----------GLYPLDNEAVT-----------------V----MRGSD------------------LKPVYRVR---GS 153 (419) T ss_pred -----------EEEEecCceEE-----------------E----EECCC------------------ceEEEEEc---cC Confidence 35555555441 0 00111 11100110 00 Q ss_pred CCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCC--- Q lcl|Aclame:pro 249 EEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGL--- 324 (535) Q Consensus 249 ~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~--- 324 (535) .. . +. .. ++++.....+...|.+|+.-++. .+.......++.... ...+.|-.+++-- T Consensus 154 ~~--~------~~-------~~--i~h~~~~~~dg~~G~s~i~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~ 215 (419) T protein:vir:14 154 DP--M------PQ-------RL--VHHVRWMSINGYTGLSPVLLHAN-AIGHAQAIQQYAGKSFMNGTALSGVIERPKDA 215 (419) T ss_pred cc--c------ch-------hh--eeEecCcCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCccEEEEecCCC Confidence 00 0 00 01 11222222234567888876654 344444444444433 4456787666521 Q ss_pred CCccchhc---cCc--ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccc-cccc Q lcl|Aclame:pro 325 TKDWVEDV---FKD--FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKS-GGNR 391 (535) Q Consensus 325 ~~~~~~d~---~~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~-~~~~ 391 (535) .....++. ... +...-|+ ..++.++.+.++..+..++..... +..+-...+++. +...++... .++- T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~ 295 (419) T protein:vir:14 216 PALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF 295 (419) T ss_pred CcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCc Confidence 11101110 000 0111232 235667777666655555543321 222222233322 233333221 1111 Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHH Q lcl|Aclame:pro 392 TFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFK 471 (535) Q Consensus 392 ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~e 471 (535) +..+ .....--+..|.-++.+++++++..| + .. .......|+++.+=.........+.++.+++++|.++.- T Consensus 296 s~~E-~~~~~f~~~~L~P~~~~ie~~l~~kl--l---~~--~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~N 367 (419) T protein:vir:14 296 SNIE-HQSLQFVIYTLLPWVKRHEQAKTRDL--L---LP--SERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSIN 367 (419) T ss_pred ccHH-HHHHHHHHHHHHHHHHHHHHHHhhhc--c---Cc--cccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHH Confidence 1111 11112224456677777777776543 1 11 011123344443322222234456677789999999988 Q ss_pred HHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 472 EMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 472 t~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..++.+ |+ ++...-++.. .+.+....+ ..+.....+.++..++..++|- T Consensus 368 E~R~~~---gl-~p~~gGD~~~----------~~~n~~~~~-~~~~~~~~~~~~~~~~~~e~~~ 416 (419) T protein:vir:14 368 DIRRLE---NM-PPVKGGDIYL----------SPMNMVDAS-KPQQLPVGKSEPTKAAIDEIGR 416 (419) T ss_pred HHHHHh---CC-CCCCCcCeee----------ecccccccc-ccccccCCCCCCccccccchhc Confidence 777543 32 2211000000 001111100 0011111111222222222222 No 194 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=86.42 E-value=0.046 Score=27.93 Aligned_cols=381 Identities=14% Similarity=0.077 Sum_probs=148.2 Q ss_pred cccc-----CC-----CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccch Q lcl|Aclame:pro 28 LGPS-----LP-----NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYN 97 (535) Q Consensus 28 ~~~~-----M~-----~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n 97 (535) .|++ +. .++...|.. -.| .+| . .| .. ...++.+..+- T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~----~~~------~g~-~-------~~---------~~------~~al~~~~V~~ 47 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLL----LQW------LGV-D-------PD---------TP------RNQLSEATYFA 47 (411) T ss_pred CchHHHHHhhccCcccccccchHHH----HHH------hcC-c-------cc---------Ch------hhhhccHHHHH Confidence 3322 00 011111111 011 111 0 00 00 11122222233 Q ss_pred hHHHHHHHHhhhhhc---ccc--ccc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHH Q lcl|Aclame:pro 98 VTARTLDGMMGQVFS---RDP--IRQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLE 171 (535) Q Consensus 98 ~~~~tv~~l~G~lF~---k~p--~~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad 171 (535) .+..+-+.++++.|. +.. ... ....+..++..==....+-.+|.+.+....+.+|-+|+++... .+.+. T Consensus 48 ~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~---- 122 (411) T protein:vir:81 48 CLKILSESLGKLPLKMYQKTERGIVKSDREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQ---- 122 (411) T ss_pred HHHHHHHhHhhCceeEEEecCCceeeecccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceE---- Confidence 344444444444432 111 111 1233455543222256789999999999999999999999764 22211 Q ss_pred HHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCc-ccceeeEEEEEeecCCceEEEEEEeeeccCC Q lcl|Aclame:pro 172 QKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGF-ETTYVQQWRVLQLNAEGNYQVERWRRETQEE 250 (535) Q Consensus 172 ~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f-~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~ 250 (535) -+..++|..|- ++ .++++. ..+....|++ .....+. T Consensus 123 --------~l~~l~~~~v~---------------~~------~~~~~~~~~~~~~~~~~--------------~~~~~g~ 159 (411) T protein:vir:81 123 --------ALWILPSQYVT---------------IV------VDDRGLLGEKNAIWYRY--------------NDPYDGK 159 (411) T ss_pred --------EEEEECCceEE---------------EE------EcCcccccccceEEEEE--------------EecCCce Confidence 23445554431 11 111111 1111111111 0000000 Q ss_pred ccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCCcc Q lcl|Aclame:pro 251 MYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTKDW 328 (535) Q Consensus 251 ~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~~~ 328 (535) . . ..+. +. ++.+ .....+...|.+|+.-++. .+........+.... ...+.|..+++.-..-. T Consensus 160 ~-~----~~~~-------~e--iih~k~~~~~~~~~G~s~~~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~ 224 (411) T protein:vir:81 160 M-Y----VFRN-------DE--ILHFKTSVTFDGITGLSVRDVLKH-TVDGALESQKFMNNLYKTGLTGKAVLEYTGDLN 224 (411) T ss_pred E-E----EEcc-------cc--EEEEcCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC Confidence 0 0 0000 00 1222 1222334567888877654 344444555555444 45567888876522111 Q ss_pred chhccC-ccee---eecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHH Q lcl|Aclame:pro 329 VEDVFK-DFKV---HLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQ 397 (535) Q Consensus 329 ~~d~~~-~~~i---~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~ 397 (535) .+.... ...+ .-|. ..++.++.+.++..+..++..... +..+....+++. +...++.......-++... T Consensus 225 ~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~ 304 (411) T protein:vir:81 225 QEARDRLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEA 304 (411) T ss_pred HHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHH Confidence 111000 0001 1232 235667777666656555543321 222233334433 3444442221111111111 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHH Q lcl|Aclame:pro 398 QEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGL 477 (535) Q Consensus 398 ~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L 477 (535) ....--...|.-++..++++++.-|---..+ .....|+++.+=.........++++.+++++|.++.-.+++.+ T Consensus 305 ~~~~f~~~~l~P~~~~ie~~l~~~ll~~~~~------~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~ 378 (411) T protein:vir:81 305 QNLAFYVDTLLYVLKQYEEEITYKILSNDLI------SQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYL 378 (411) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhc------CCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 1112224446667777777665433111111 1123344443322222234457778889999999988776543 Q ss_pred HhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCC Q lcl|Aclame:pro 478 RRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGN 531 (535) Q Consensus 478 ~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (535) |+ ++...-++.. ...+..+-+. ...+.+.||.+ T Consensus 379 ---gl-~p~~ggD~~~----------~~~n~~pl~~-------~~~~~~kgGd~ 411 (411) T protein:vir:81 379 ---DM-PADDYGNNLM----------ANGNYIPLSM-------LGANYGKGGDS 411 (411) T ss_pred ---CC-CCCCCCCeee----------eccCccchhh-------hhhhhccCCCC Confidence 43 2221101000 0011111110 00011112222 No 195 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=84.78 E-value=0.058 Score=27.37 Aligned_cols=372 Identities=10% Similarity=0.060 Sum_probs=150.9 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCC-CCCChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSV-DSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~-~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) .|++=. ...+.+. ....|..+-+ ..+++.... .... -...++.+..+-.+..+-+.+ T Consensus 1 Mg~f~~-~~~~~~~---~~~~~~~~~~------------~~~~~~~~~~~~v~------~~~~l~~~~v~~~i~~ia~~i 58 (382) T protein:vir:48 1 MPIFNL-ATESPPD---NQGGFFDVVD------------SDFLASLKGNEWVS------AETALRNSDLFSIINQLSNDL 58 (382) T ss_pred Cccccc-cccCCcc---cccccccchh------------hhccccccCCcccc------hHhhhccHHHHHHHHHHHHhh Confidence 444311 1111111 0001111000 011111000 0000 122334433333333333333 Q ss_pred hhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEech Q lcl|Aclame:pro 107 MGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHP 186 (535) Q Consensus 107 ~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~ 186 (535) +++.|. +-- ..-..|.+..+ ...+-.+|.+.+....+.+|.+++++.....|.. --+..++| T Consensus 59 a~~~~~----~~~-~~~~~L~~~PN-~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~------------~~l~~i~~ 120 (382) T protein:vir:48 59 ATVKLI----TSR-KKLQGIVDNPS-NNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRD------------MKWEYLRP 120 (382) T ss_pred ccCcee----eec-chhhhhhhhcC-CCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcE------------EEEEEEcC Confidence 333332 210 11122444333 3468899999999999999999999987654431 14555566 Q ss_pred hhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCC Q lcl|Aclame:pro 187 TSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN 266 (535) Q Consensus 187 ~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 266 (535) ..|- +...+++ .. ..|++.. ...... .....+. . T Consensus 121 ~~v~---------------------v~~~~~~--~~--~~y~~~~--------------~~~~~~---~~~~~~~----~ 154 (382) T protein:vir:48 121 SQVS---------------------FNRLDNK--DG--IYYNITF--------------DDPRIP---PKQHVPQ----N 154 (382) T ss_pred ceeE---------------------EEEcCCC--Ce--EEEEEEe--------------cCcccc---ceeEEcC----c Confidence 5541 1111111 00 1111100 000000 0000000 0 Q ss_pred ccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCC--ccchhccCc--ceeeec Q lcl|Aclame:pro 267 PFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTK--DWVEDVFKD--FKVHLG 341 (535) Q Consensus 267 ~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~--~~~~d~~~~--~~i~iG 341 (535) .+|-|. +....+...|.+|+.-+.. .+...+....+.... ...+.|..+++--.. ++....... ....-. T Consensus 155 --evih~~--~~~~~~~~~G~s~l~~~~~-~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~~~~~~~n 229 (382) T protein:vir:48 155 --DVLHFR--LLSVDGGMTSVSPLMALSR-ELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFKTKLSRSRQAMKQM 229 (382) T ss_pred --cEEEec--CCCCCCccccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhhccC Confidence 112221 2233445678888876554 334444444444443 445788777753111 111100000 011112 Q ss_pred CcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 342 SRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 342 ~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) +..++.++.+.++.-+..++.... .+..+....+++. +...++.. +...+..+.. ..+--+..|.-++..+++. T Consensus 230 ~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~-~~~~~~~~~~-~~~~~~~~l~p~~~~i~~~ 307 (382) T protein:vir:48 230 QGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGG-QGDQQSSLEM-SSDLYSKAVSRYLRPFLSE 307 (382) T ss_pred CCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCCcccHHHH-HHHHHHHHHHHHHHHHHHH Confidence 344566777666655555554433 2334444445443 23333422 2222221111 1122345566667777776 Q ss_pred HHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKAT 497 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~ 497 (535) +++.|- . +. .+.+...+.... ......+-+++.+|.+++-.+++.|.+.|+++.+....+ T Consensus 308 l~~~l~--~-~~---------~~~~~~~~~~~~--~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~~~~~~------ 367 (382) T protein:vir:48 308 LSQKLS--C-DV---------DADIFPAVDPTG--SNYISRINSLVKTGTLAQNQGLYILQQAEILPKELPNGE------ 367 (382) T ss_pred HHHHhc--C-hh---------hhhhhhhhccch--hHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcchhhhh------ Confidence 665441 1 11 111111111111 223334557788899999999998988887753221110 Q ss_pred hchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 498 VEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 498 ~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) .+.+. ..+|.+++.+ T Consensus 368 -----~~~~~-----~~GGd~~~~~ 382 (382) T protein:vir:48 368 -----NPNST-----LKGGEEDGQD 382 (382) T ss_pred -----cCCCC-----CCCCCCCCCC Confidence 00000 1122222222 No 196 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=83.83 E-value=0.065 Score=27.08 Aligned_cols=384 Identities=12% Similarity=0.078 Sum_probs=146.1 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |.-||+--+=+.-++.--+....-...-.++-+.+... .+.| ..+. T Consensus 4 ~~~~~~~~~m~~F~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--~~~~------------------------- 49 (413) T protein:vir:96 4 VSEIRKDKNLKFFNNKRSPTEESKAKDEIPKAPQVVMT-------LPNF--FKEL------------------------- 49 (413) T ss_pred cchhhhhhcCCccccCCCcchhhhhhcccccccccccc-------chhh--Hhhh------------------------- Confidence 44444221112211110000000000000000000000 0111 0000 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhcccccc---------ccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIR---------QLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGF 151 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~---------~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~ 151 (535) |-....++.-.+++...|+.+++.+-+-+..+ .....+..++..--....+-.+|.+.+....+.+ T Consensus 50 -----~~~~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~ 124 (413) T protein:vir:96 50 -----ISDGYTKLSDSPEVRMAVDCIADLVSNMTIQLMQNGETGDKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLE 124 (413) T ss_pred -----ccchhHHHhhchHHHHHHHHHHHhhccCceEEEEecCCCccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhc Confidence 11111111113444555555554443322221 2233455555433335678899999999999999 Q ss_pred CcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEE Q lcl|Aclame:pro 152 GRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVL 230 (535) Q Consensus 152 G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl 230 (535) |.+++++..+..|. +| -+..++|..|. + ....+. ..| T Consensus 125 Gn~~~~i~r~~~g~------------~~~~L~~l~~~~v~-----------------~----~~~~~~------~~y--- 162 (413) T protein:vir:96 125 GNGNAVVKPQVSGD------------KIIGLTPISPYKVT-----------------F----NVSDDD------LDY--- 162 (413) T ss_pred CCeEEEEEEcCCCC------------ceEEEEEecCceeE-----------------E----EEcCCe------EEE--- Confidence 99999998765543 23 35555565441 0 000110 011 Q ss_pred eecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 231 QLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM 310 (535) Q Consensus 231 ~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~ 310 (535) .+.. .+. .. . +=.+|=|. .+....+...|.+|+.-+.. .+.......++... T Consensus 163 --------~~~~-----~~~-~~------~------~~evih~k-~~~~~~~~~~G~s~~~~~~~-~i~~~~~~~~~~~~ 214 (413) T protein:vir:96 163 --------SITF-----DNK-EY------D------PSTLLHFV-LNPSIERPFIGTGYKVALKD-IVGNLKQASVTKKG 214 (413) T ss_pred --------EEee-----cCc-EE------c------hhhEEEEe-ccCCCCCccccccHHHHHHH-HHHHHHHHHHHHHH Confidence 1100 000 00 0 00111111 12222344567888766543 33333444444433 Q ss_pred -HHHhcCceeEeeCCCCccchhccC---c--ceeeecC---cccccCCCCCccceeecCcchh-HHHHHH---HHHHHHH Q lcl|Aclame:pro 311 -AFVAGQPTAFFTGLTKDWVEDVFK---D--FKVHLGS---RAIIPLPQGATAGILQITPNSV-PFEAMT---HKESQMI 377 (535) Q Consensus 311 -l~~~~~P~~~~~G~~~~~~~d~~~---~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l-~~~~l~---~~e~qm~ 377 (535) ....+.|..+++. +....++..+ . +...-|. ...+.++.+.. .+-++.+-+. ..+.++ ....+++ T Consensus 215 ~~~ng~~p~gil~~-~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~~~~-~~~~~~~~~~~d~q~~e~~~~~~~~Ia 292 (413) T protein:vir:96 215 FMASEYMPNLIVSV-DSDSDELSDEEGRENFEEMYLKRKEAGKPWIIPEGMV-NVQQIKPLTLNDLAINDAVTLDKKTVA 292 (413) T ss_pred HHhccCCccEEEEe-CCCCCHHHHHHHHHHHHHHhcCccccCceeeecCCcc-cccccccCChhHHHHHHHHHHHHHHHH Confidence 4456678877773 2211111100 0 0111222 22344454432 2223322111 122233 2223333 Q ss_pred H---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHH Q lcl|Aclame:pro 378 A---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPN 454 (535) Q Consensus 378 ~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~ 454 (535) . +...++... +.+++... .--+..|.-++.++++++++.| +. + ...|+++.+=.......+ T Consensus 293 ~~fgVP~~~lg~~----~~~~~~~~-~~~~~~l~P~~~~ie~~ln~~l------l~---~--~~~~~fd~~~ll~~d~~~ 356 (413) T protein:vir:96 293 GIFGVPAFLLGVG----TYNKDEFN-NFINTKIMSIAQVIQQTYNKLI------VE---E--DMYFSLNPRSLYNYSLTE 356 (413) T ss_pred HHhCCCHHHcCCC----cchHHHHH-HHHHHHHHHHHHHHHHHHHHhh------CC---C--CcEEEEechhhhccCHHH Confidence 2 233344221 11221111 1123346666666666665433 11 1 234444433222222244 Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 455 ERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 455 ~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) .+.++.+++.+|.++.-++++.+ |. ++... -+++- ...+..+-+. ......+++++| T Consensus 357 ~~~~~~~~~~~G~~t~NE~R~~~---g~-~p~~~----gd~~~------~~~n~~~~~~-------~~~~~~~~~~dt 413 (413) T protein:vir:96 357 MVSAGAQMTQLNALRRNEFRNWV---GM-PPDAE----MDDLL------VLENYLQQKD-------LVNQKKLIQDET 413 (413) T ss_pred HHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCC----cceee------ecccccchhh-------cccccCCCCCCC Confidence 57778899999999988877644 42 23211 00110 0011111110 001111244444 No 197 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=81.96 E-value=0.081 Score=26.57 Aligned_cols=397 Identities=11% Similarity=0.065 Sum_probs=153.5 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCC-------------CCChhhHHHHHHHHhhhccchh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVD-------------SRDEEQRRRYETYLQRAIFYNV 98 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~-------------~~~~E~~~~Y~~rl~rA~~~n~ 98 (535) |-.-..+. ..+ ++.+-..|+-.+-.. ....+. -..+..+..+..+-. T Consensus 1 ~~~~~~~~---------~~~----------~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~g~~-v~~~~al~~~~v~~c 60 (437) T protein:vir:10 1 MKQGKQRA---------LGR----------IKSSFLKWLGVPISLTDGSFWSAWGGMGSSSGET-VTADSALQLSAVWSC 60 (437) T ss_pred CCcchhhh---------hhh----------hHHhhhhhcCCcccCCchhHHHhhcccccCCCce-echHhhhccHHHHHH Confidence 43211000 000 011111121111000 000000 001223333333344 Q ss_pred HHHHHHHHhhhhhc---ccc----ccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHH Q lcl|Aclame:pro 99 TARTLDGMMGQVFS---RDP----IRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLE 171 (535) Q Consensus 99 ~~~tv~~l~G~lF~---k~p----~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad 171 (535) ...+-+.++++.|. +.. .+.....+..++..-=....+-.+|.+.+....+.+|-+|+++.... |.++ T Consensus 61 i~~Ia~~ia~lp~~~~~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-g~~~---- 135 (437) T protein:vir:10 61 VRLIAETIATLPLNLYQTKPDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA-GVLI---- 135 (437) T ss_pred HHHHHHHHhhCceeEEEEcCCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEE---- Confidence 44444455544432 211 11223445555543333457889999999999999999999997642 3321 Q ss_pred HHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCc Q lcl|Aclame:pro 172 QKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEM 251 (535) Q Consensus 172 ~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~ 251 (535) -+..+.|..|- + ....++ ...|++... .|.. .. T Consensus 136 --------~L~~l~p~~v~-----------------i----~~~~~g-----~~~y~~~~~--~g~~--~~--------- 168 (437) T protein:vir:10 136 --------GLELMLPQRTT-----------------V----KRLTSG-----ALQYTYRNV--DGTV--ST--------- 168 (437) T ss_pred --------EEEEEcCcceE-----------------E----EECCCC-----eEEEEEEec--CceE--EE--------- Confidence 24455554431 0 001111 001111110 1110 00 Q ss_pred cccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCC---c Q lcl|Aclame:pro 252 YYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTK---D 327 (535) Q Consensus 252 ~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~---~ 327 (535) .+.+ .. +.+.....+...|.+|+.-++. .+.......++... ....+.|..+++.-.. + T Consensus 169 -------~~~~------dI---ih~r~~~~d~~~G~spi~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e 231 (437) T protein:vir:10 169 -------LAED------DV---FHVRGFSLDGLMGLTPIQYARE-VLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKE 231 (437) T ss_pred -------Eccc------cE---EEecCcCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHH Confidence 0000 01 1121112234567888765543 33333333344333 3455678888774221 1 Q ss_pred cchhccCc-ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHH Q lcl|Aclame:pro 328 WVEDVFKD-FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQE 399 (535) Q Consensus 328 ~~~d~~~~-~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~ 399 (535) ......+. ....-|. ..++.++.+.++.-+..++..... +..+....+++. +...++.... ..+...+.++ T Consensus 232 ~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~t~~~sn~e 310 (437) T protein:vir:10 232 KRAEIRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSE-KSTSWGTGIE 310 (437) T ss_pred HHHHHHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CcccccchHH Confidence 11110000 0011222 235667777666655555544432 222222333332 2344442222 1122112221 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHH Q lcl|Aclame:pro 400 ---EASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAG 476 (535) Q Consensus 400 ---~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~ 476 (535) ..--...|.-+...+++++++-|= ... ......|+++.+=.......+.+.++-.++.+|.++.-.+++. T Consensus 311 ~~~~~f~~~tl~P~~~~ie~~l~~kll------~~~-e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~ 383 (437) T protein:vir:10 311 QQTLGFLTFTLRPWLTRIEQAARRSLL------RPG-ERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAK 383 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc------Ccc-ccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHH Confidence 122344566677777777665441 110 1112234444332222222445667778999999999888765 Q ss_pred HHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 477 LRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 477 L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) + |+- +-.-.++.. ....... +-...+.....++..+.+.++.+++..++ T Consensus 384 ~---gl~-pi~gg~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (437) T protein:vir:10 384 E---NLP-PMGGNAAVL-TVQSALL-----PIDKLGEHTTATAAQDALKAWLYQEEKTR 432 (437) T ss_pred h---CCC-CCCCCcceE-eecCccc-----chhhccCcCCCcchhccccccCCCCCCCC Confidence 4 332 211111100 0000000 00000000111122223333333333333 No 198 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=81.44 E-value=0.086 Score=26.44 Aligned_cols=447 Identities=11% Similarity=0.111 Sum_probs=152.7 Q ss_pred CCcchhhh----h--hhhhcceecCCCCCCCCcccccCCCCCc-----cCHHHHHHHHHHHHHHHHhcChHHHHHHHhhh Q lcl|Aclame:pro 1 MARKRTTI----R--RDVQSKVLIPPQAPPTSGLGPSLPNVGY-----QRVEFGEMLPKWRKIMDCLSGQEAIKAKREEY 69 (535) Q Consensus 1 ~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~M~~v~~-----~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~Y 69 (535) |..+-..| | ++-..-..+-|+ .-+|--+|..+.. .|+.+..-.+.=+-+...+.|.+.++.. ..| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~-p~~ 76 (576) T protein:vir:96 1 MVTRLADIFKRLRLGRDYEDIIDTVPI---DDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTK-RSY 76 (576) T ss_pred ChhhHHHHHHHHhccCccccchhhhhc---ccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCcccc-Ccc Confidence 22111111 1 111111112222 2355555554432 2222222222212121223444333321 111 Q ss_pred CCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc------------------cccccccC--H-----HHH Q lcl|Aclame:pro 70 LPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS------------------RDPIRQLP--P-----ALE 124 (535) Q Consensus 70 LP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~------------------k~p~~~~p--~-----~l~ 124 (535) + ..-..+..++..---.+++..+|+.++..+-. +....+.. + .++ T Consensus 77 ~----------~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~ 146 (576) T protein:vir:96 77 M----------KNSDNLHDVLKQFGNNPILNAIILTRSNQVAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIE 146 (576) T ss_pred h----------hhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHH Confidence 1 01112223332211134455555554433311 11111110 0 122 Q ss_pred HHHhccCC----CCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCC Q lcl|Aclame:pro 125 AIVEDIDG----EGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGG 199 (535) Q Consensus 125 ~l~~d~d~----~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g 199 (535) .++.++.- .-.+..+|.+.+....+.+|.+++++-....+.+ +| -+..++|..| T Consensus 147 ~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd~~g-----------~~~~L~pl~p~~V---------- 205 (576) T protein:vir:96 147 NFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKKNAT-----------TMDKFIAVDPSTI---------- 205 (576) T ss_pred hhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecCCCC-----------ceEEEEEeCCcee---------- Confidence 23322211 1246889999999999999999998765433221 12 3444555443 Q ss_pred ccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccC Q lcl|Aclame:pro 200 KSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPL 279 (535) Q Consensus 200 ~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~ 279 (535) .+ ..+.++.-..... .|.....+... ... +-..| +.++... T Consensus 206 -------~v----~~~~dg~~~~~~~----------------~~~~~~~~~~~------~~~-----~~~di-i~~~~~~ 246 (576) T protein:vir:96 206 -------FY----ATDKNGKIIKGGK----------------RFVQVINKKVV------ASF-----TSREM-AMGIRNP 246 (576) T ss_pred -------EE----EECCCCceeeeee----------------EEEEecCCceE------EEe-----cccce-EEEeecC Confidence 11 1112221101111 11111111000 000 00111 1122111 Q ss_pred ---CCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEee--CC---CCccchhccCc-ceeeecCcc----c Q lcl|Aclame:pro 280 ---DNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFT--GL---TKDWVEDVFKD-FKVHLGSRA----I 345 (535) Q Consensus 280 ---~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~--G~---~~~~~~d~~~~-~~i~iG~~~----~ 345 (535) ......|.|||.-++.. +........+... ....++|-.++. |. +++..+..... ....-|..+ . T Consensus 247 ~~d~~~~~~G~Spi~~a~~~-i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p 325 (576) T protein:vir:96 247 RTELSSSGYGLSEVEIAMKQ-FIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVP 325 (576) T ss_pred CCCcccCcccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccce Confidence 12245688998766543 3333334444433 344567876654 32 11111110000 011123322 2 Q ss_pred ccCCCCCccceeecCcchhH-HHHHHHHHHHHHH---Hhhhhhcccc-cc-------cchHHHHHHH---HHHHHHHHHH Q lcl|Aclame:pro 346 IPLPQGATAGILQITPNSVP-FEAMTHKESQMIA---MGANLLVKSG-GN-------RTFGEAQQEE---ASEQSILSAC 410 (535) Q Consensus 346 ~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~---lga~~l~~~~-~~-------~ta~~a~~~~---~~~~S~L~~~ 410 (535) +.++.+.++.-+..++.... .+..+....+++. +...++.... +. .+.+.+..+. +-....|.-+ T Consensus 326 ~vl~~G~~~~~ls~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~ 405 (576) T protein:vir:96 326 VVMADDIKFVNMTPTANDMQFEKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPL 405 (576) T ss_pred eecCCCceEEeccCChhhHHHHHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHH Confidence 44666655555544444333 2333333344433 2333342211 11 1112222222 2234456677 Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCH-HHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCH Q lcl|Aclame:pro 411 TKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTP-NERAELILEWQQGAITFKEMRAGLRRAGVASEDDAK 489 (535) Q Consensus 411 a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~-~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~ 489 (535) ...++++++..| +..+ +....+. |.-.+... .+..++..++.+|.++.-.+++.+-. .-++..+.. T Consensus 406 ~~~ie~~ln~~L--l~~~------~~~~~~~----f~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl-~piegGD~~ 472 (576) T protein:vir:96 406 LRFIEDLINTHI--ISEY------SDKYVFQ----FVGGDTKSELDKIKILQEEVKTYKTVNEARKEKGL-KPIEGGDVL 472 (576) T ss_pred HHHHHHHHHhhh--chhc------cCceEEE----eccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCC-CCCCCccee Confidence 777777776533 1221 1223333 33222211 12224445566799998877764411 111111110 Q ss_pred --------------------HHHHHHHHhchh--hcccC-CC------cCCCCCCCccccccc----ccccCCCCCCCC Q lcl|Aclame:pro 490 --------------------AETEGKATVEFI--AKTAA-AG------KVGDAASGGTNKAKL----NNGNGGGNQAGN 535 (535) Q Consensus 490 --------------------eee~~~i~~e~~--~~~~~-~~------~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 535 (535) +..++++..-.. ..+.+ .+ +..++..+.++..+. ++|.==.+..+| T Consensus 473 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (576) T protein:vir:96 473 LDGSFIQSMSLNTQKEQYEDTKQKERFDMIQQFLNSPDDEEPQQESTEDKVDGRESNDPTKIDSPVGTDGQLKDQDNVK 551 (576) T ss_pred ccccccccccccccCCCCCCccccccccccccccCCCCCCCCCCCCCCCcccccccccCCCCCCccccccccCCCCccc Confidence 000000000000 00000 00 000000000111111 111111112222 No 199 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=81.42 E-value=0.086 Score=26.43 Aligned_cols=383 Identities=13% Similarity=0.030 Sum_probs=147.7 Q ss_pred hcChHHHHHHHhh-hCCC-----CCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh---cc-cccccc-CHHHH Q lcl|Aclame:pro 56 LSGQEAIKAKREE-YLPM-----PSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF---SR-DPIRQL-PPALE 124 (535) Q Consensus 56 ~~G~~~~~~~g~~-YLP~-----~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF---~k-~p~~~~-p~~l~ 124 (535) |--....+.+.+. .++. +-+...+... -..+..++-+..+-.+..+-+.++++.| ++ .-...+ ...+. T Consensus 1 m~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~l~ 79 (409) T protein:vir:10 1 MLFRKGFKNQSQEISIDDKKILEWLGINPSETY-VNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKDGIKRVPDHYLE 79 (409) T ss_pred CcccccccCcCCCCCCChHHHHHHhcCCcCcce-echhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCeeeccCchHH Confidence 1111111111000 0000 0000000000 0011122222222333333334444333 11 111111 22345 Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCcccee Q lcl|Aclame:pro 125 AIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVIS 204 (535) Q Consensus 125 ~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt 204 (535) .++..-=....+-.+|.+.+....+.+|-+|+++.....|.+ -.+..++|..|- T Consensus 80 ~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~------------~~L~~i~~~~V~-------------- 133 (409) T protein:vir:10 80 YLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEI------------KGLYPLKSDGMK-------------- 133 (409) T ss_pred HHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcE------------EEEEEEcCCceE-------------- Confidence 554322335678899999999999999999999987665542 256666666551 Q ss_pred EEEEEEEEeecCCCcccce-eeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcC Q lcl|Aclame:pro 205 LVVIQENVLAQDDGFETTY-VQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNA 283 (535) Q Consensus 205 ~v~l~E~~~~~~d~f~~~~-~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~ 283 (535) +..+++++.... ...|+ +.... + ... ..+. =..|-|- ....+. T Consensus 134 -------v~~~~~~~~~~~~~~~y~--------------~~~~~-g-~~~----~~~~------~evih~r---~~~~d~ 177 (409) T protein:vir:10 134 -------IFVDDTGLLNSENNVWYL--------------YTDDL-G-QRH----KFMS------DEILHFK---GLTADG 177 (409) T ss_pred -------EEEcCCccccccceEEEE--------------EEeCC-c-eeE----Eecc------ccEEEec---CcCCCC Confidence 111112211111 01111 11000 0 000 0000 0112221 111233 Q ss_pred CCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhccC---c--ceeeec---CcccccCCCCCcc Q lcl|Aclame:pro 284 DIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDVFK---D--FKVHLG---SRAIIPLPQGATA 354 (535) Q Consensus 284 ~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~~~---~--~~i~iG---~~~~~~lp~~~~~ 354 (535) ..|.+||..+... +.......++... +...+.|-.+++.- ....++..+ . ....-| ...++.++.+.++ T Consensus 178 ~~G~s~i~~~~~~-i~~~~~~~~~~~~~f~ng~~~~gil~~~-~~l~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~ 255 (409) T protein:vir:10 178 LAGLSVIELLNHL-IENGKSSETYLNNFFKNGLQVKGLVQYA-GDLNPEAEEVFKENFERMSSGLKNAHRIAMLPIGYKF 255 (409) T ss_pred cccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCCcEEEEcC-CCCCHHHHHHHHHHHHHHhccccccCCceecCCCceE Confidence 5678888766543 4444444444433 34456777776632 111111100 0 011223 2345667777666 Q ss_pred ceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 355 GILQITPNSVPF-EAMTHKESQMIA---MGANLLVKS-GGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQ 429 (535) Q Consensus 355 ~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~-~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~ 429 (535) .-+..++..... +..+....+++. +...++... .++.+..+ ....+--+..|.-++..+++++++-|=.-.. T Consensus 256 ~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e-~~~~~f~~~~l~P~~~~ie~~ln~kL~~~~~-- 332 (409) T protein:vir:10 256 EPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNIT-EQNREFYIDTLQSILNMYELEINYKLFLISE-- 332 (409) T ss_pred EEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCchh-- Confidence 655555544321 222222333332 233344211 11111111 1111223445666777777766544311111 Q ss_pred CCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc Q lcl|Aclame:pro 430 TGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK 509 (535) Q Consensus 430 g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~ 509 (535) -.....|+++.+=.........+.++.+++++|.++.-.+++.+ |+- +-..-+ ++- ...+.. T Consensus 333 ----~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~l---gl~-p~~ggD----~~~------~~~n~~ 394 (409) T protein:vir:10 333 ----IKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELE---EDE-PLEGGD----VLL------INGNMI 394 (409) T ss_pred ----ccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCC-CCCCcC----eee------eccCcc Confidence 01123344443322222224456678889999999988877654 322 211000 000 011111 Q ss_pred CCCCCCCcccccccccccCCCCC Q lcl|Aclame:pro 510 VGDAASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~ 532 (535) +-+..+ . +..+||.- T Consensus 395 ~~~~~~-------~-~~~kgGe~ 409 (409) T protein:vir:10 395 PVKMAG-------E-QYSKGGEK 409 (409) T ss_pred chhhcc-------c-cccccCCC Confidence 111100 0 00111111 No 200 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=79.71 E-value=0.1 Score=26.02 Aligned_cols=417 Identities=14% Similarity=0.120 Sum_probs=154.1 Q ss_pred ccccCCCCCccCHHHH--HHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFG--EMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~--~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) .|++-.=..+.++... .....|.-..-...+-.....+|. ... -+..++.+..+-.+..+-+. T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~v~------~~~al~~~~v~~~i~~ia~~ 65 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGE---------RVT------PHDALQVSAVFASVRLLSET 65 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCc---------eec------hHHhhccHHHHHHHHHHHHh Confidence 1211100001111000 000001100000000000000000 000 12233433334445555555 Q ss_pred Hhhhhhc---ccc-c-cccC-HHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 106 MMGQVFS---RDP-I-RQLP-PALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 106 l~G~lF~---k~p-~-~~~p-~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) ++++.|. +.- . ..+. ..+..++..-. ...+-.+|.+.+....+.+|-+|++|... .+... T Consensus 66 iA~lp~~~~~~~~~~~~~~~~~~~~~ll~~pn-~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~------------ 131 (457) T protein:vir:62 66 IATLPLSTYSKRGGTRKEIDTPEWLDFPNAEP-GGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIA------------ 131 (457) T ss_pred HhhCceEEEEecCCccccccchHHHHhccccC-CCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEE------------ Confidence 5555543 111 0 1121 22333433222 35789999999999999999999998543 22211 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceE-EEEEEeeeccCCccccccce Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNY-QVERWRRETQEEMYYSYSKH 258 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y-~v~~w~~~~~~~~~~~~~~~ 258 (535) -+..+.|.+|. + ....++++. ...|+.+.....|.. .+..+ T Consensus 132 ~l~~l~p~~v~-----------------v---~~~~~~~~~---~~~~~~y~~~~~g~~~~~~~~--------------- 173 (457) T protein:vir:62 132 GLDVLDPTKIH-----------------V---HMVMVDGLR---RKVFEAYDIDADGNEVLLGWF--------------- 173 (457) T ss_pred EEEEEcCcceE-----------------E---EEeccCCcc---ceeEEEEEEccCCceeEEEee--------------- Confidence 23334444431 1 011112111 111211111111110 00000 Q ss_pred eeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhccCc- Q lcl|Aclame:pro 259 VPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDVFKD- 335 (535) Q Consensus 259 ~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~~~~- 335 (535) + -.. ++++ +....+...|.+|+.-++. .+...+...++... ....+.|-.++.--. ...++..+. T Consensus 174 -~-------~~e--iih~r~~~~~~~~~G~sp~~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gil~~~~-~ls~e~~~~~ 241 (457) T protein:vir:62 174 -T-------PRD--VLHIPGMMLPGDFVGCSPISYARE-SIGLALAAQKYGAHFFRNGAMPGAVVEVPG-TMSEEGLARA 241 (457) T ss_pred -C-------ccc--eEEecCCCCCCceecccHHHHHHH-HHHHHHHHHHHHHHHHhccCCcceEEEcCC-CCCHHHHHHH Confidence 0 011 1222 2222233578888865543 34554545555444 344567776666321 111111100 Q ss_pred ----ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHH---HH Q lcl|Aclame:pro 336 ----FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQE---EA 401 (535) Q Consensus 336 ----~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~---~~ 401 (535) +...-|. ..++.++.+.++..+..++..... +..+....++++ +...++.... ..+...+..+ .+ T Consensus 242 ~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~~~sn~eq~~~~ 320 (457) T protein:vir:62 242 REAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT-NSTSWGSGLAEQNIA 320 (457) T ss_pred HHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC-CcccccchHHHHHHH Confidence 0011232 335667877777666665544332 222222333322 3344442222 2222112221 12 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCC Q lcl|Aclame:pro 402 SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAG 481 (535) Q Consensus 402 ~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~g 481 (535) --...|.-++.++++++++.|- .+.. .....|+++.+=.......+.+.++-++++.|.++.-++++.+ | T Consensus 321 f~~~~l~P~~~~ie~~ln~~L~--~~~~-----~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~---g 390 (457) T protein:vir:62 321 FTMFSLRPWLERIEAGFNRLLF--AETA-----DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE---D 390 (457) T ss_pred HHHHHHHHHHHHHHHHHHhhhc--Cccc-----cCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---C Confidence 2244567777777777764442 1111 1112344443322222224456677789999999998877644 3 Q ss_pred CCCccCCH--HHHH-----HHHHhchhhcccCCCcCCCCCCCcccccccccccCCCC-----CCCC Q lcl|Aclame:pro 482 VASEDDAK--AETE-----GKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGN-----QAGN 535 (535) Q Consensus 482 vl~~~~~~--eee~-----~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 535 (535) + ++.... ++.. ..+..+...++..++...++..+..+..+...++.|.| ++|- T Consensus 391 l-~pi~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 455 (457) T protein:vir:62 391 M-TPLPDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGETEDDD 455 (457) T ss_pred C-CCCCCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccccccccc Confidence 2 221111 1111 01111101111111111111111111111112222222 1222 No 201 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=78.88 E-value=0.11 Score=25.84 Aligned_cols=382 Identities=14% Similarity=0.072 Sum_probs=148.1 Q ss_pred CCcchhhhhhhhhcceec---CCCCCCCCccccc------CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLI---PPQAPPTSGLGPS------LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLP 71 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP 71 (535) |. .-|.+.= +|.-||.+|+.-+ |.....+..+..+....|...... +|-. ..+.+ T Consensus 1 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~------~~~~~ 64 (409) T protein:vir:83 1 MG---------FWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAW-SGYP------ESWAT 64 (409) T ss_pred Cc---------hhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhccccccccc-cccc------ccccc Confidence 32 1122221 5556667775432 222344444445555555444332 1110 11111 Q ss_pred CCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhh Q lcl|Aclame:pro 72 MPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGF 151 (535) Q Consensus 72 ~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~ 151 (535) .. ..... . +..+.-++.+-.+..+-+.++++.|..--.-..-+.+..++..-=....+-.+|.+.+....+. T Consensus 65 ~~-~~~~t---~---~~~~~~~~v~acV~~Ia~~iA~lpl~~~~~~~~~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll- 136 (409) T protein:vir:83 65 PS-WGSAQ---D---KLRTLIDVAWACIDLNASVLSSMPIYRMRNGRIIDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL- 136 (409) T ss_pred cC-ccccc---h---hhHhhhHHHHHHHHHHHHhhccCceEEeeCCccccchhhhcccCCCCCCCHHHHHHHHHHHHhh- Confidence 11 11111 1 2222333333334444444444433210000112233333332222346788999988877655 Q ss_pred CcEEEEE-eecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEE Q lcl|Aclame:pro 152 GRAAIFT-DYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVL 230 (535) Q Consensus 152 G~~~vlV-D~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl 230 (535) |-+|+++ .....|.++ -+..++|..| ++...+ T Consensus 137 Gnay~~~i~r~~~G~~~------------~L~pl~p~~v---------------------~v~~~~-------------- 169 (409) T protein:vir:83 137 GEAFVLPMAHGSDGYPI------------RFRVVPPWLV---------------------NVELKK-------------- 169 (409) T ss_pred CCcEEEEEEECCCCcEE------------EEEEECCcce---------------------EEEEcC-------------- Confidence 8888764 333333211 2333444322 010111 Q ss_pred eecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 231 QLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEE 309 (535) Q Consensus 231 ~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~ 309 (535) +|.+..++ . +... .. .++.+ +....+...|.+||.-++..-.-+... .++.. T Consensus 170 ----~g~~~y~~---~--~~~~------------~~-----eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~-~~~~~ 222 (409) T protein:vir:83 170 ----GARREYRI---G--GLNV------------TD-----EILHIRYQGNTADAHGHGPLESAAPRQVVIGLL-QKYVQ 222 (409) T ss_pred ----CceEEEEE---c--cccC------------cc-----ceEEeCCCCCCCCcccccHHHHHHHHHHHHHHH-HHHHH Confidence 11111111 0 0000 00 12333 222334557889987776655444433 33333 Q ss_pred -HHHHhcCceeEeeCC---CCccchhccCc-ceeeec-CcccccCCCCCcc-ceeecCcchhHHHHHHHHH---HHHHH- Q lcl|Aclame:pro 310 -MAFVAGQPTAFFTGL---TKDWVEDVFKD-FKVHLG-SRAIIPLPQGATA-GILQITPNSVPFEAMTHKE---SQMIA- 378 (535) Q Consensus 310 -~l~~~~~P~~~~~G~---~~~~~~d~~~~-~~i~iG-~~~~~~lp~~~~~-~~~e~~~~~l~~~~l~~~e---~qm~~- 378 (535) .....+.|..+++-- +++..+...+. +....| +...+.+..+.+. ..+.+++..+ +.++.+. .+|+. T Consensus 223 ~~f~nga~p~gil~~~~~ls~e~~~~~~~~~~~~~~~nag~~~il~~g~~~~~~~~~s~~d~--q~le~r~~~~~eIa~~ 300 (409) T protein:vir:83 223 NLAETGGVPLYWLGVERRLSETEAVDLMDRWIESRSKYAGHPALVTGGATLNQAKSMSAQDL--SLMELTQFNEARIAIL 300 (409) T ss_pred HHHhcCCCcceEeecCCCCCHHHHHHHHHHHHHhhCCccCccceecCCcccccccCCCHHHH--HHHHHHHhhHHHHHHH Confidence 334567888887632 11111111000 001112 1222344444443 2344444433 2333222 22322 Q ss_pred --HhhhhhcccccccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCH Q lcl|Aclame:pro 379 --MGANLLVKSGGNRTFGEAQQEEA---SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTP 453 (535) Q Consensus 379 --lga~~l~~~~~~~ta~~a~~~~~---~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~ 453 (535) +...++........++-+.++.+ --...|.-++..+++++++-| +. .+. .|+++.+=....... T Consensus 301 fgVPp~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~L------l~---~~~--~~~f~~~~llr~d~~ 369 (409) T protein:vir:83 301 LGVPPFLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWA------LP---SPQ--HLELNRDDYTRPSLV 369 (409) T ss_pred hCCCHHHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh------CC---CCc--EEEeehhhhhccCHH Confidence 33434432211222232332222 224456666677777665422 11 122 344444322222223 Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccc Q lcl|Aclame:pro 454 NERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNK 520 (535) Q Consensus 454 ~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~ 520 (535) +...++..++++|.++.-+.++.+ | +++.. +++.-. +.+. T Consensus 370 ~r~~~~~~~~~~G~lT~NE~R~~~---g-lpp~~-------------------ggd~l~----~~gv 409 (409) T protein:vir:83 370 ERATAYKIMIEAGVMEPNEARAME---R-LHSEA-------------------AAVRLS----GGGV 409 (409) T ss_pred HHHHHHHHHHhCCCcCHHHHHHHh---C-CCCCC-------------------CCcccC----CCCC Confidence 445666678888888877665422 2 11110 110000 0001 No 202 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=78.05 E-value=0.12 Score=25.66 Aligned_cols=393 Identities=12% Similarity=0.053 Sum_probs=145.5 Q ss_pred CCc-chhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCC Q lcl|Aclame:pro 1 MAR-KRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRD 79 (535) Q Consensus 1 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~ 79 (535) |.- ++.-+.+.+.+++.-+--..+++++--+.+ |+++ ...... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~-~~~~v~ 44 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSP-----------------------------------WKNR-SFWGVI 44 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccccccc-----------------------------------cCCc-cccccc Confidence 110 011222222222222222222222211111 0100 000000 Q ss_pred hhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---cccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEE Q lcl|Aclame:pro 80 EEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAI 156 (535) Q Consensus 80 ~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~v 156 (535) ....++.+..+..+..+-+.++.+.|. +.. .....+..++..-=....+-.+|.+.+....+.+|-+|+ T Consensus 45 ------~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~--~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~ 116 (412) T protein:vir:26 45 ------NNTLETNETIFSAITKLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYV 116 (412) T ss_pred ------hhhhhccHHHHHHHHHHHHhHhhCceeEeeccc--cccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEE Confidence 123333333344445555555555443 111 123334454432122457889999999999999999999 Q ss_pred EEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCc Q lcl|Aclame:pro 157 FTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEG 236 (535) Q Consensus 157 lVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g 236 (535) ++.....|.+. -+.+++|..|- + ..+.++. ...|++ .. .+| T Consensus 117 ~i~r~~~G~~~------------~L~~l~~~~v~---------------v-----~~~~~~~-----~~~y~~-~~-~~g 157 (412) T protein:vir:26 117 LIERDIYHQPS------------KLFLLNPDVVE---------------M-----LIENQSR-----ELYYSI-HA-ATG 157 (412) T ss_pred EEEECCCCcEE------------EEEEEcCceeE---------------E-----EEeCCCc-----EEEEEE-Ec-CCc Confidence 99876554321 34455555441 0 0111110 001111 00 001 Q ss_pred eEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhc Q lcl|Aclame:pro 237 NYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAG 315 (535) Q Consensus 237 ~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~ 315 (535) . ... .+. ..| +.+ +....+...|.+|+.-++. .+........+ .+...+ T Consensus 158 ~--~~~----------------~~~-------~ev--ih~~~~~~~~~~~G~s~i~~~~~-~i~~~~a~~~~--~~~~~~ 207 (412) T protein:vir:26 158 N--KLI----------------VHN-------MDM--LHFKHIVASNMVQGISPIDVLKN-TTDFDNAVRTF--NLTEMQ 207 (412) T ss_pred e--EEE----------------Ecc-------ccE--EEeCCCCCCCCcccccHHHHHHH-HHHHHHHHHHH--HHHhcC Confidence 0 000 000 001 111 1122344567888765543 23332222222 233333 Q ss_pred Cc-eeEeeCCCCccchhc--cCc--ceeeecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhcc Q lcl|Aclame:pro 316 QP-TAFFTGLTKDWVEDV--FKD--FKVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVK 386 (535) Q Consensus 316 ~P-~~~~~G~~~~~~~d~--~~~--~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~ 386 (535) .+ -.+++.-..-..+.. ... ....-++..++.++.+.++..+..++..... +..+-...+++. +...++.. T Consensus 208 ~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~ 287 (412) T protein:vir:26 208 KPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNA 287 (412) T ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC Confidence 33 333322111111100 000 0011234456667776666655555544321 222222233332 22333322 Q ss_pred cccccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHH Q lcl|Aclame:pro 387 SGGNRTFGEAQQE---EASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEW 463 (535) Q Consensus 387 ~~~~~ta~~a~~~---~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~ 463 (535) .. +++-+..+ ..--...|.-+...+++++++-|=--..+ .....|+.+.+=.......+.+.++-+++ T Consensus 288 ~~---~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kLl~~~~~------~~~~~~~fd~~~l~~~d~~~~~~~~~~~~ 358 (412) T protein:vir:26 288 RS---NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR------EKNRYFKFNVKSYLRADSATQAEVYFKAV 358 (412) T ss_pred CC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc------cCcceEEeechhhhccCHHHHHHHHHHHH Confidence 11 11111111 12223446666666666665432111111 11123444433222222345567778899 Q ss_pred hcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 464 QQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 464 ~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) .+|.++.-..++.+ |. ++...-+ ++- . ..+..+-+. ..... ...+||..-+| T Consensus 359 ~~G~~t~NE~R~~~---gl-~p~~ggD----~~~---~---~~n~~~~~~-----~~~~~-~~~~gG~~n~~ 410 (412) T protein:vir:26 359 RSGYYTINDIREWE---DL-PPVEGGD----KPL---I---SGDLYPIDT-----PLELR-KSLKGGDKNVN 410 (412) T ss_pred hCCCcCHHHHHHHh---CC-CCCCCcC----eee---e---ccccccccc-----chhhc-ccccCCCCCcC Confidence 99999988887654 32 2221101 100 0 000000000 00000 00111111112 No 203 >protein:vir:3520 Length: 720 # NCBI annotation: P19 # Family: family:all:487 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050980;genbank:gi:9633566;genbank:GeneID:1262313 Probab=77.04 E-value=0.13 Score=25.46 Aligned_cols=476 Identities=9% Similarity=0.009 Sum_probs=161.0 Q ss_pred CCCCC-ccCHHHHHHHHHHHHHHHHhcChHHHHHHH---hhh--CCCCCCCCCChhhHHHHH---HHHhhh-ccchhHHH Q lcl|Aclame:pro 32 LPNVG-YQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---EEY--LPMPSVDSRDEEQRRRYE---TYLQRA-IFYNVTAR 101 (535) Q Consensus 32 M~~v~-~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~~Y--LP~~~~~~~~~E~~~~Y~---~rl~rA-~~~n~~~~ 101 (535) |++.. ..|-++ +..++.+......+|++. ..| .+ +..=+++..+..+ .+..|- +-+|.++. T Consensus 1 ma~~~~~~l~~~------~~~~~~~~~~~~~~r~~~~~d~~f~~~~---G~QW~~~~~~~~~~~l~~~~~P~~~~N~i~~ 71 (720) T protein:vir:35 1 MAETLQKRHEQI------MRKFDRAHSPQEAVREKCLEATRFARVP---GGQWEGATAAGSELGKHFEKYPKFEINKIST 71 (720) T ss_pred CchHHHHHHHHH------HHHHHHHHhhhHHHHHHHHHHHhhhccC---CCCCCHHHHHHHHHHHhhCCCCeEEEccHHH Confidence 99643 333332 222333333334444322 112 12 1111122212111 122233 55799999 Q ss_pred HHHHHhhhhhcccccccc-CH----------HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccc Q lcl|Aclame:pro 102 TLDGMMGQVFSRDPIRQL-PP----------ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVT 168 (535) Q Consensus 102 tv~~l~G~lF~k~p~~~~-p~----------~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t 168 (535) +|+..+|.-=.+.+.+.+ |. .|..+++.+-- -++.+.-...+|..++.+|.+|+=| ||....++-. T Consensus 72 ~v~~v~g~~~~nr~d~~v~P~~~~~d~~~Ae~l~~~~~~~~~-~~~~~~~~s~Af~~~i~~G~G~~~v~~d~~~~~d~~~ 150 (720) T protein:vir:35 72 ELNRIISEYRHNRITVKFRPGDKTASEALANKLNGLFRADYE-ETDGGEACDNAFDDGSTGGFGCFRLTTNLVNALDPMD 150 (720) T ss_pred HHHHHHhHHHhCCCceEEEcCCCcchHHHHHHHHHHHHHHHH-hcCchHHHhHHHHHhhhccceeEEeeecccccCCCCc Confidence 999999998666555532 21 12223322211 1356666789999999999999977 3432221100 Q ss_pred hHHHHhccCCcEEEEechhhh-hcceeeecC---Cccce--eEEEE---EEEEe----------ecC---CCcccceeeE Q lcl|Aclame:pro 169 VLEQKLGLYRPTITLVHPTSI-INWRTKLVG---GKSVI--SLVVI---QENVL----------AQD---DGFETTYVQQ 226 (535) Q Consensus 169 ~ad~~~~~~rPy~~~~~~~~I-i~w~~~~~~---g~~~L--t~v~l---~E~~~----------~~~---d~f~~~~~~~ 226 (535) . ......+|- ..++.+| ++|.....+ .+..+ .|+-. +..+. ..+ +.|.... T Consensus 151 ~--~~~i~i~~v--~~~~~~v~~Dp~a~~~D~sDar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~d~~~~~~--- 223 (720) T protein:vir:35 151 E--RQRICLEPI--YDPARSVWFDPDAKKYDKSDAEWAFCMYSLSAEKYKAEYNKDPATLMSGIERSWDYDWYDVDV--- 223 (720) T ss_pred c--cceeeEecc--cCchhheeecccccccChhhhhhhhhhcCCCHHHHHHhCCCccccccccccccccccccCCCc--- Confidence 0 000000000 0001111 122211111 11000 00000 00000 000 0111111 Q ss_pred EEEEee--------------cCC-ceEEEEEEeeecc---------------------CC-c-ccc-ccceeeeccCCCc Q lcl|Aclame:pro 227 WRVLQL--------------NAE-GNYQVERWRRETQ---------------------EE-M-YYS-YSKHVPTDGNGNP 267 (535) Q Consensus 227 ~rvl~l--------------~~~-g~y~v~~w~~~~~---------------------~~-~-~~~-~~~~~~~~~~~~~ 267 (535) +|+.+- +.. |.+ ..|..+.- .. . ++. .+..+......-| T Consensus 224 v~i~E~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~v~~~~~~g~~~l~~~~~~p 301 (720) T protein:vir:35 224 VYIAKYYEVKKESVDVVSFQNPLTSET--VTYDSDQLELVEDELADIGFIEAARRTIKRRRVYVSVVDGEGFLEKAQRIP 301 (720) T ss_pred eEEEEeeEEEEEEEEEEEeecCCCCCe--eecCCccHHHHHHHHhhhccccccccceeEEEEEEEeeccchhcccCCCCC Confidence 111110 000 000 00000000 00 0 000 0111111112246 Q ss_pred cceeEEEEeccCCC---cCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccch---hccCccee--- Q lcl|Aclame:pro 268 FKEIPFQFIGPLDN---NADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVE---DVFKDFKV--- 338 (535) Q Consensus 268 l~~IP~v~~~~~~~---~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~---d~~~~~~i--- 338 (535) .+.||||+|...+. +-....--+.++.+.+..++...|-+.+++- ..+...-.|-.+.+.. ....++.. T Consensus 302 ~~~fP~vP~~g~r~~~d~~~~~~G~vr~~kd~Q~~~N~~~s~~~~~~~--~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~ 379 (720) T protein:vir:35 302 GEHIPLIPVYGKRWFIDDIERVEGHIAKAMDAQRLYNLQVSMLADSAT--QDTGSIPIVGKSQIKTLEKYWANRNKNRPA 379 (720) T ss_pred CCccceEEEEeeeeccCCCcccceeeecchhHHHHHHHHHHHHHHHHH--cCCccccccCcchHHHHHHHhhcccccccc Confidence 67788886643221 1111122345677888888888887777764 3444333332111110 00000000 Q ss_pred -----eecCcccccCCCCCccceeecCc-chhHHHHHHHHHHHHHHHhh---hhhcccccccchHHHH-HHHHHHHHHHH Q lcl|Aclame:pro 339 -----HLGSRAIIPLPQGATAGILQITP-NSVPFEAMTHKESQMIAMGA---NLLVKSGGNRTFGEAQ-QEEASEQSILS 408 (535) Q Consensus 339 -----~iG~~~~~~lp~~~~~~~~e~~~-~~l~~~~l~~~e~qm~~lga---~~l~~~~~~~ta~~a~-~~~~~~~S~L~ 408 (535) .++.......+...++++.+..+ .....+.|+.-...|..+++ .++...+ + +++.+- .+..+..-.|. T Consensus 380 ~l~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~llq~~~~~i~~vsGi~~~~lG~~s-n-~SG~Ai~~rq~qg~~~~~ 457 (720) T protein:vir:35 380 FLPLNEIVDKQGNIIAPPTPVGYTQPQPLNQAMAALLQQTGADIQEVTGSSQAMQPMPS-N-IAKETVNHLMHRSDMSSF 457 (720) T ss_pred ccccccccccCcccccCCCcccccCCCCCchHHHHHHHHHHHHHHHHhCCChHHcCccc-c-hHHHHHHHHHHHHHHHHH Confidence 01111111111112444444322 12223444444444433322 2333333 4 444432 22223233344 Q ss_pred HHHHHHH----HHHHHHHHHHHHHcCCC-----CC--Cce---------------------------eEEEEecccCCcc Q lcl|Aclame:pro 409 ACTKNVS----MAFRKALRWANQFQTGI-----VN--DET---------------------------VEYNLNTDFPAAR 450 (535) Q Consensus 409 ~~a~~~~----~a~~~~lr~~a~~~g~~-----~~--~~~---------------------------~~v~~n~df~~~~ 450 (535) .+-.|+. ..-+.+|.++..|++.. .. +.. +.|.+........ T Consensus 458 ~~~Dnl~~~~~~~g~~lL~lI~~~y~~er~~RI~~ed~~~~~v~~n~~~~d~~~g~~v~~NDi~~g~yDv~v~~~p~~~s 537 (720) T protein:vir:35 458 IYLDNMAKSLKRAGEVWLSMAREVYGSDRQVRIVNADGTDDIALMSVVINDNQTGQVVAMNDLSSGRYDVTVDVGPSYTA 537 (720) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceEeechhhhccCCCceeeeecceeeeeEEEEecccCccc Confidence 4444544 44556777888887521 11 111 1112221112222 Q ss_pred CCHHHHHHHHHHHhcCCCCHHH----HHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccc-- Q lcl|Aclame:pro 451 LTPNERAELILEWQQGAITFKE----MRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLN-- 524 (535) Q Consensus 451 ~d~~~~~al~~l~~~G~is~et----~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~-- 524 (535) ...+.+++++++..+ ..+... +...+-+. .+.-..+|..+++......+....+.. +........+.+. T Consensus 538 ~req~~~~m~qll~~-~~p~~~~~~~~~~~ile~---~d~p~~~e~~erirk~~~~~~~~~~~~-~e~qq~~a~~qq~~q 612 (720) T protein:vir:35 538 RRDATVSVLTNLLAG-MLPQDPMRQVLQGIILDN---MEGEGLDEFKEYNRKQLLTQGVVKPRN-TEEEQMVAQMIQQAQ 612 (720) T ss_pred HHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHh---cCchhHHHHHHHHHhhcchhcccCccC-hhHHHHHHHHHHHHH Confidence 234556666666643 111111 11111110 011112334444433321111000000 0000000000000 Q ss_pred -cc-----cCCCCCCCC Q lcl|Aclame:pro 525 -NG-----NGGGNQAGN 535 (535) Q Consensus 525 -~~-----~~~~~~~~~ 535 (535) .. ..+.-.+.. T Consensus 613 q~~~e~~~aqa~l~qaq 629 (720) T protein:vir:35 613 QPNAELVAAQGVLMQGQ 629 (720) T ss_pred hHhHHHHHHHHHHHHHH Confidence 00 000000000 No 204 >protein:vir:172 Length: 708 # NCBI annotation: portal protein # Family: family:all:487 # MgeID: mge:5 # MgeName: HK620 # Cross-refs: genbank:acc:NP_112077;genbank:gi:13559867;genbank:GeneID:920970 Probab=75.89 E-value=0.14 Score=25.24 Aligned_cols=478 Identities=9% Similarity=-0.025 Sum_probs=171.6 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHH---h--hhCCCCCCCCCChhhHHHHHHHHh---h-hccchhHHHH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKR---E--EYLPMPSVDSRDEEQRRRYETYLQ---R-AIFYNVTART 102 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g---~--~YLP~~~~~~~~~E~~~~Y~~rl~---r-A~~~n~~~~t 102 (535) |++... + .+...+.+++.++.....+++.. . .|.. +..=+++..+..+.|-+ | .+-+|.++.+ T Consensus 1 ma~~~~---~--~~~~~~~r~~~~~~~~~~~r~~~~~d~~f~~y~---G~Qw~~~~~~~l~~~~q~~~rP~~~~N~i~~~ 72 (708) T protein:vir:17 1 MAETLE---K--KHERIMLRFDRAYSPQQEVREKCIEATRFARVP---GGQWEGATAAGTKLDEQFEKYPKFEINKVATE 72 (708) T ss_pred CchhHH---H--HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccC---CCCCCHHHHHHHHhhhhhcCCCceEEcchHHH Confidence 986432 1 22333444555555554444322 1 2432 22223333344444332 2 4457999999 Q ss_pred HHHHhhhhhcccccccc-----------CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEE--eecCCCcccch Q lcl|Aclame:pro 103 LDGMMGQVFSRDPIRQL-----------PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFT--DYPNVGRPVTV 169 (535) Q Consensus 103 v~~l~G~lF~k~p~~~~-----------p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlV--D~p~~~~~~t~ 169 (535) |+.++|.==++.+.+.+ .+.|..+++.+--. ++.+.-...+|..++.+|.+|+=| ||-...++... T Consensus 73 i~~v~g~e~~nr~d~~v~p~~~~~d~~~Ae~l~~l~~~~~~~-~~~~~~~s~Af~~~i~~G~G~~~~~~d~~~e~d~~~~ 151 (708) T protein:vir:17 73 LNRIIAEYRNNRITVKFRPGDREASEELANKLNGLFRADYEE-TDGGEACDNAFDDAATGGFGCFRLTSMLVNEYDPMDD 151 (708) T ss_pred HHHHHhhHhhCCcceEEecCCCcchHHHHHHHHHHHHHHHHh-cCchhHHhHHHHHhhhcccceeeeeecccccCCCCCC Confidence 99999996555444421 12233333322211 346666889999999999999844 33111000000 Q ss_pred HHHHhccCCcEEEEe-chhhh-hcceeeecCCccceeEEEEEE---------EEeec-----------CCCcccceeeEE Q lcl|Aclame:pro 170 LEQKLGLYRPTITLV-HPTSI-INWRTKLVGGKSVISLVVIQE---------NVLAQ-----------DDGFETTYVQQW 227 (535) Q Consensus 170 ad~~~~~~rPy~~~~-~~~~I-i~w~~~~~~g~~~Lt~v~l~E---------~~~~~-----------~d~f~~~~~~~~ 227 (535) -.+. ++-..+ ++.+| +||.....+... --|+..+. .+.+. +.++.+-...++ T Consensus 152 ----~~~i-~i~~~~~~~~~v~~Dp~a~~~D~sD-ar~~~~~~~~~~d~~~~~yp~~a~~~~~~~~~~~~~~~~~~~d~v 225 (708) T protein:vir:17 152 ----RQRI-AIEPIYDPSRSVWFDPDAKKYDKSD-ALWAFCMYSLSPEKYEAEYGKKPPASLDVTSMTSWEYDWFDADVI 225 (708) T ss_pred ----cccc-ceEeeccchhheecCccccccChhh-hhhhhhhccCCHHHHHHhCccccchhhhhhhhccccccccCCCeE Confidence 0001 111112 23344 333322211100 00000000 00000 000111111222 Q ss_pred EEEeec---------------CCceEEEEEEeeeccC-----------------------Ccccc-ccceeeeccCCCcc Q lcl|Aclame:pro 228 RVLQLN---------------AEGNYQVERWRRETQE-----------------------EMYYS-YSKHVPTDGNGNPF 268 (535) Q Consensus 228 rvl~l~---------------~~g~y~v~~w~~~~~~-----------------------~~~~~-~~~~~~~~~~~~~l 268 (535) ||.+.. .-|. +..|..+... ..+.. .+..+......-|. T Consensus 226 rv~e~~~r~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~g~~~~~~r~~~r~~v~~~~~~g~~~l~~~~~~p~ 303 (708) T protein:vir:17 226 YIAKYYEVRKESVDVISYRHPITGE--IATYDSDQVEDIEDELAIAGFQEVARRSVKRRRVYVSVVDGDGFLEKPRRIPG 303 (708) T ss_pred EEEEEEEEeeeeeEEEEEecCccCc--eeeeCccchhhHHHHHHhcccccceeeeeeEEEEEEEeecccccccCCCCCCC Confidence 222110 0000 0011100000 00000 01111112233466 Q ss_pred ceeEEEEeccCCCc-CCCC--cchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeE-----eeCCCCccchhccCcce--- Q lcl|Aclame:pro 269 KEIPFQFIGPLDNN-ADID--HPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAF-----FTGLTKDWVEDVFKDFK--- 337 (535) Q Consensus 269 ~~IP~v~~~~~~~~-~~~~--~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~-----~~G~~~~~~~d~~~~~~--- 337 (535) +.+|+|+|...+.. .... .--+.++.+.+..++...|-+.+.+-.+..-+++ +.|+...|......... T Consensus 304 ~~fP~vP~~g~r~~~d~~~~~yG~vr~~kd~Q~~~N~~~S~~~~~~a~~~~~~~i~~~~a~~g~~~~~~~~~~~~~~~~~ 383 (708) T protein:vir:17 304 EHIPLIPVYGKRWFIDDIERVEGHIAKAMDPQRLYNLQVSMLADTAAQDPGQIPIVGMEQIRGLEKHWEARNKKRPAFLP 383 (708) T ss_pred CccceEEEecccccccCCCcccchhhhchhHHHHHHHHHHHHHHHHHhcCCcceeechhhhhhhHHhhhhcccchhhhhh Confidence 77888876433221 1111 1224577888888887777776665444333332 22333333221111100 Q ss_pred -eeecCcccccCCCCCccceeecCc-chhHHHHHHHHHHHHHHHhh-h--hhcccccccchHHH-HHHHHHHHHHHHHH- Q lcl|Aclame:pro 338 -VHLGSRAIIPLPQGATAGILQITP-NSVPFEAMTHKESQMIAMGA-N--LLVKSGGNRTFGEA-QQEEASEQSILSAC- 410 (535) Q Consensus 338 -i~iG~~~~~~lp~~~~~~~~e~~~-~~l~~~~l~~~e~qm~~lga-~--~l~~~~~~~ta~~a-~~~~~~~~S~L~~~- 410 (535) ..+.....+..+.....+..++.. .....+.++.....|..+++ . ++.. ..+ |++.+ .....+..-.+..+ T Consensus 384 ~~~~~~~~g~v~~~a~~~~~~~~~~~~~~~~~llq~~~~~i~~~tGi~d~~~G~-~sn-~SG~Ai~~rq~qg~~~~~~~~ 461 (708) T protein:vir:17 384 LREVRDKYGNIIAGATPAGYTQPAVMNQALAALLQQTSADIQEVTGGSQAMQQM-PSN-IAQETVNNLMNRADMASFIYL 461 (708) T ss_pred hhccCCcccccccccCCcccCCCccccHHHHHHHHHHHHHHHHhcCCChHHccC-ccc-hHHHHHHHHHHHHHHHHHHHH Confidence 111111111111111222222211 12223445555555544422 1 2222 223 44433 22222222333444 Q ss_pred ---HHHHHHHHHHHHHHHHHHcCCC-------CCCceeEEEEec---------------------------ccCCccCCH Q lcl|Aclame:pro 411 ---TKNVSMAFRKALRWANQFQTGI-------VNDETVEYNLNT---------------------------DFPAARLTP 453 (535) Q Consensus 411 ---a~~~~~a~~~~lr~~a~~~g~~-------~~~~~~~v~~n~---------------------------df~~~~~d~ 453 (535) ...+...-+.+|.++.++++.. .++..-.+.+|. -........ T Consensus 462 Dnl~~~~~~~g~~lL~lI~~~y~~~R~~RI~~edg~~~~v~in~~~~d~~~g~~~~~nDi~~g~~Dv~v~~~p~~~t~r~ 541 (708) T protein:vir:17 462 DNMAKSLKRAGEVWLSMAREVYGSEREVRIVNEDGSDDIAVLSAQVVDRQTGAVVALNDLSVGRYDVTVDVGPSYTARRD 541 (708) T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcEEEEecCCCCcceeeecceeccCCCccceeeccceeeeeeEEEecccCchhHHH Confidence 4444455566778888887421 011111111221 111112233 Q ss_pred HHHHHHHHHHhcCCCC---HHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCccccccc-ccccCC Q lcl|Aclame:pro 454 NERAELILEWQQGAIT---FKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKL-NNGNGG 529 (535) Q Consensus 454 ~~~~al~~l~~~G~is---~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 529 (535) +.+.+|+++++..... ...+...|-.. . +--..++..+++....... +...+..........+ ...--. T Consensus 542 ~~~~~l~qll~~~~~~~~~~~~~~~l~l~~--~-D~p~~~ei~e~ir~~~~~~----~~~~~~~~e~~q~~~q~qq~~q~ 614 (708) T protein:vir:17 542 ATVSVLTNVLSSMLPADPMRPAIQGIILDN--I-DGEGLDDFKEYNRNQLLIS----GIAKPRNEKEQQIVQQAQMAAQS 614 (708) T ss_pred HHHHHHHHHHHhcCCccchhHHHHHHHHHh--c-CCCChHHHHHHHHHHhhcc----ccccCcchhhHHHHHHHHHHHHH Confidence 4556667666653221 11111111110 1 1112344555554432111 0000000000000000 000000 Q ss_pred CCCCCC Q lcl|Aclame:pro 530 GNQAGN 535 (535) Q Consensus 530 ~~~~~~ 535 (535) +..+=. T Consensus 615 q~~~~~ 620 (708) T protein:vir:17 615 QPNPEM 620 (708) T ss_pred HHHHHH Confidence 000000 No 205 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=73.56 E-value=0.17 Score=24.82 Aligned_cols=385 Identities=15% Similarity=0.107 Sum_probs=141.6 Q ss_pred HHhhhccchhHHHHHHHHhhhhhcccccc------cc----CH---HHHHHHhccCC---------CCCCHHHHHHHHHH Q lcl|Aclame:pro 89 YLQRAIFYNVTARTLDGMMGQVFSRDPIR------QL----PP---ALEAIVEDIDG---------EGVSLDQQAKKALG 146 (535) Q Consensus 89 rl~rA~~~n~~~~tv~~l~G~lF~k~p~~------~~----p~---~l~~l~~d~d~---------~G~~L~~~~~~~~~ 146 (535) ..+.+--.++....|+.++..+-+-+..+ .. .. .+..++....- .-.+...|++.+.. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 11112224555555655555553333222 01 11 12222222111 11367789999999 Q ss_pred HHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEe-ecCCCcccceee Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVL-AQDDGFETTYVQ 225 (535) Q Consensus 147 ~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~-~~~d~f~~~~~~ 225 (535) ..+.+|.+|+.+-....|.++ -+..++|..|.-.+ ++......+-..+.+. ...+. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~------------~l~~l~~~~v~~~~----d~~~~~~~~~~~~~~~~~~~~~------- 137 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPT------------GLAYVPGHTIRKRM----DERGFVQLLEEKEKYFGVAGDR------- 137 (467) T ss_pred HHHhcCCeEEEEEECCCCcEE------------EEEEeCCceeEeee----ecceeEeecCCceeeEEecccc------- Confidence 999999999988766555421 35555555542100 0000000000000000 00000 Q ss_pred EEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhH Q lcl|Aclame:pro 226 QWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNS 304 (535) Q Consensus 226 ~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~ 304 (535) +. ....|.+............ +.... .+-..| +++ .....+...|.||+.-+... +...... T Consensus 138 -~~---~~~~~~~~~~~~~~~~~~~-----~~~~~-----~~~~di--ih~r~~~~~~~~~G~s~~~~~~~~-i~~~~~~ 200 (467) T protein:vir:31 138 -YQ---TNGNGDLDPVFVDADDGST-----GTSVS-----NPANEL--IFKRNHSPLYPHYGAPDIIPAVKT-IRGDSAA 200 (467) T ss_pred -ce---eecccceeeeeeeeccccc-----cceeE-----eccccE--EEecCCCCCCCcccccHHHHHHHH-HHHHHHH Confidence 00 0001111000000000000 00000 011111 222 22334556788888765543 3333334 Q ss_pred HHHHHH-HHHhcCceeEe--eCC--CCccchhccC------cc----------eeeecCcccccCCCCCccceeecC--c Q lcl|Aclame:pro 305 ADYEEM-AFVAGQPTAFF--TGL--TKDWVEDVFK------DF----------KVHLGSRAIIPLPQGATAGILQIT--P 361 (535) Q Consensus 305 sdl~~~-l~~~~~P~~~~--~G~--~~~~~~d~~~------~~----------~i~iG~~~~~~lp~~~~~~~~e~~--~ 361 (535) ..+... ....+.|-.++ +|- +++....... .. +.. .....+.++.+.++..++++ + T Consensus 201 ~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~g~~-n~~~~~~l~~g~~~~~~~~~~~~ 279 (467) T protein:vir:31 201 QDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDNNEDNHRTAFIETEKIV-QNEDYLNLADGADRSDVEIRLEP 279 (467) T ss_pred HHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhhhcchhhhhhhhhcccc-cccccccccCCCcccccceeEEe Confidence 444433 34456776655 332 2111100000 00 000 11233455666666555432 2 Q ss_pred c----hhHHHHHH---HHHHHHHH---Hhhhhhccc-cccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 362 N----SVPFEAMT---HKESQMIA---MGANLLVKS-GGNR-TFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQ 429 (535) Q Consensus 362 ~----~l~~~~l~---~~e~qm~~---lga~~l~~~-~~~~-ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~ 429 (535) - .-..+.++ ....++++ +...++... .++. +..+. ....-.+..|.-+...++++++..| +..+. T Consensus 280 ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~~s~~e~-~~~~f~~~~l~P~~~~ie~~ln~~l--~~~~~ 356 (467) T protein:vir:31 280 LTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAFSTDAEE-QRKEFAEETIQPKQHDFGELLYELV--HKQGL 356 (467) T ss_pred ccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcccCHHH-HHHHHHHHHHHHHHHHHHHHHHHhh--cchhh Confidence 1 11122222 22333333 233333211 1111 11111 1112234557777777787777643 22222 Q ss_pred CCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCc Q lcl|Aclame:pro 430 TGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGK 509 (535) Q Consensus 430 g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~ 509 (535) . .. ...|+++.+-.........+.++..+++.|.++.-.+++.+ |+ ++. .+++.. ......+...+. T Consensus 357 ~--~~--~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~---Gl-~pi--~d~~~~---~~~~~~~~~~~~ 423 (467) T protein:vir:31 357 D--AP--DWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEF---GF-EPF--PEEHVY---GGETLVAEVTGG 423 (467) T ss_pred c--cC--CceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCC--Cccccc---CCcccccccccc Confidence 1 11 22344444333333334566778889999999998777544 43 222 111100 000000000000 Q ss_pred CCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 510 VGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+....++ ++..++..++-+ T Consensus 424 ~~~~~~~~~-----~~~~~~~~~~~~ 444 (467) T protein:vir:31 424 SGPGGGIGD-----QIEQLVEDRADE 444 (467) T ss_pred cCCCCcccC-----cCCCCCCCcccc Confidence 000000000 000001111111 No 206 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=72.05 E-value=0.19 Score=24.57 Aligned_cols=423 Identities=14% Similarity=0.106 Sum_probs=147.6 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHH--hcChHHHHHHHhhhCCCCCCCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDC--LSGQEAIKAKREEYLPMPSVDSR 78 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~--~~G~~~~~~~g~~YLP~~~~~~~ 78 (535) .-|+-.-||. .|.+.| |....+.|.. +. +.|+ ...|+|.+...+. T Consensus 64 ~~~~~~~~kk---~~i~~p----------------------fkkk~~~~~~--d~f~~s~e------s~s~vtsls~pda 110 (945) T protein:vir:10 64 IFRKNQVLKK---EKIIVP----------------------YNHQEPPFKF--NLFEYSPE------SLMYLPSISDPDA 110 (945) T ss_pred eehhhhHHHh---hccccc----------------------ccccccchhh--hhhhccCc------cceecccccCccc Confidence 1122111121 112212 1111111111 11 1111 1223333211000 Q ss_pred -ChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---cc--ccc-------ccCHHHHHHHh--ccCCCCCC-HHHHHH Q lcl|Aclame:pro 79 -DEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RD--PIR-------QLPPALEAIVE--DIDGEGVS-LDQQAK 142 (535) Q Consensus 79 -~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~--p~~-------~~p~~l~~l~~--d~d~~G~~-L~~~~~ 142 (535) ..-+ ...+..+.-+..+-....+-+.++++.|+ +. ... .-...+..|+. |....+.. ...|.+ T Consensus 111 f~~vn-Vs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~edG~~~~~~kk~~~~hpL~~LL~rPNp~mT~~eFwqsFl~ 189 (945) T protein:vir:10 111 FFLIN-LFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIEDKHVNYYLKRIRDARNILEFLERPDPYFSEVNSWEYLLG 189 (945) T ss_pred eeeeh-hhhhhhhccHHHHHHHHHHHhhhccCceEEEEecccCcccccccccccchHHHHHHhCCCcccChhHHHHHHHH Confidence 0000 00011112222233444444555555543 11 100 01123455655 33333322 334778 Q ss_pred HHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccc Q lcl|Aclame:pro 143 KALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETT 222 (535) Q Consensus 143 ~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~ 222 (535) .+....+.+|.+++++.....|.+ --+..++|.+|- + ..+++++ T Consensus 190 ~Lv~dLLL~GNAYieIiRd~~G~i------------i~L~pLdPs~Vt-----------------i---~~ddDG~---- 233 (945) T protein:vir:10 190 MVLDDILTIDRGAIVKIRDEQGNL------------VAITPVDGTTIK-----------------P---ILSEDTG---- 233 (945) T ss_pred HHHHHHhhcCCeEEEEEECCCCcE------------EEEEEECCcceE-----------------E---EEcCCCc---- Confidence 888999999999999976655431 145556665441 1 0111111 Q ss_pred eeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEE-eccCCCcCCCCcchHHHHHHHHHHHH Q lcl|Aclame:pro 223 YVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQF-IGPLDNNADIDHPPLLDLCEVNIGHY 301 (535) Q Consensus 223 ~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~-~~~~~~~~~~~~ppL~dLA~ln~~hy 301 (535) ...+|+ ....+.... ..+ +-..|=++. +...+.....|.||+.-++. .+... T Consensus 234 ~~y~Yv----------------~~idG~~~~----~v~------a~DvIlhirn~s~DG~~~GyGlSPIeaa~~-aI~~a 286 (945) T protein:vir:10 234 IVVGYV----------------QEVDGAIVA----HFD------KRDVVLFRQNLTPDVYMYGYSLPPIEILYK-VILSD 286 (945) T ss_pred EEEEEE----------------EecCCceEE----Eec------CCceEEEeccCCCCcccccCCchHHHHHHH-HHHHH Confidence 011111 000010000 000 001111111 12222233457888876653 33333 Q ss_pred hhHHHHHHHHH--HhcCceeEee--CCC-----------CccchhccCc-ceeeecCcc--cccCCCCCccceeecCcch Q lcl|Aclame:pro 302 RNSADYEEMAF--VAGQPTAFFT--GLT-----------KDWVEDVFKD-FKVHLGSRA--IIPLPQGATAGILQITPNS 363 (535) Q Consensus 302 ~~~sdl~~~l~--~~~~P~~~~~--G~~-----------~~~~~d~~~~-~~i~iG~~~--~~~lp~~~~~~~~e~~~~~ 363 (535) .....+..-.+ ..+.|..++. |.. .+..+..... ....-|.++ .+.++.+.++.-+..++.. T Consensus 287 lAaek~aar~FskNGa~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~D 366 (945) T protein:vir:10 287 IFIDKGNLDYYRKGGSIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRD 366 (945) T ss_pred HHHHHHHHHHHHhCCCccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhH Confidence 33333333332 3457755553 211 1000000000 001123222 2345665555544444333 Q ss_pred hH-HHHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeE Q lcl|Aclame:pro 364 VP-FEAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVE 439 (535) Q Consensus 364 l~-~~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~ 439 (535) .. .+..+....++++ +...++....+..-++.......-.+..|.-++..+++++++.|. ... .+..+. T Consensus 367 aQfLEsrkfs~eeIArAFGVPP~lLG~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl---~~~----eg~~i~ 439 (945) T protein:vir:10 367 MQFKELAEFVARKICAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVS---EFR----NEKDIK 439 (945) T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccc----cCceeE Confidence 22 1223333334433 223333222211111111122233355688888888888876552 111 223344 Q ss_pred EEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC--ccCCHHHHHHHHHhchhhcccC--CCcCCCCCC Q lcl|Aclame:pro 440 YNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVAS--EDDAKAETEGKATVEFIAKTAA--AGKVGDAAS 515 (535) Q Consensus 440 v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~--~~~~~eee~~~i~~e~~~~~~~--~~~~~~~~~ 515 (535) |..+.+ ......+.+.++.+++++|.++.-.+++.+ |.-+ ..|..---..... ..+.... .+...+... T Consensus 440 fdFd~l--dl~D~ksraEal~kli~sGiLTiNEvRe~l---GLpPIeGGD~lli~~nn~~--P~d~~~ka~~ga~p~q~a 512 (945) T protein:vir:10 440 LWFKED--DLEKERDWWNIIQGQLNTGFRSINEARMEK---GLEPVPWGDVPFSGLRNWK--PEDEQAKAQQGAMPPQLA 512 (945) T ss_pred EEecch--hccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCcceeeecccccc--ccccccccccCCCCcccc Confidence 554433 221123456677789999999998877644 3221 1111100000000 0000000 000000000 Q ss_pred CcccccccccccCCCCCCCC Q lcl|Aclame:pro 516 GGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~ 535 (535) +...+++...| |+.++.++ T Consensus 513 q~~~dqp~~kG-Ge~dEns~ 531 (945) T protein:vir:10 513 QAMADQPSQQG-GGVDENSS 531 (945) T ss_pred cCCCCCCCCCC-CCCCCCCC Confidence 00001111110 11111111 No 207 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=71.50 E-value=0.19 Score=24.48 Aligned_cols=392 Identities=11% Similarity=0.064 Sum_probs=143.7 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) |.. |--...... .++....+..-. . .-.+.+. .+.....-+ ...+++.+..+-.+..+-+.++.+.| T Consensus 1 ~~~----~~~~~~~k~--~~~~~~~~~~~~-~--~~~~~~~-~~~~~~~v~---~~~a~~~~~V~~ci~~ia~~ia~lp~ 67 (409) T protein:vir:96 1 MAK----ENIVTRIKK--KLIDNWIDQSAS-K--LYDFSPW-KNKSFWGVI---NNTLETNETIFSAITKLSNSMASLPL 67 (409) T ss_pred Ccc----ccchhhhhh--HHhhhhhccccc-c--ccccccc-cCccccccc---hhhHhhhHHHHHHHHHHHHhhhhCce Confidence 651 111111111 111122211100 0 0001110 000111000 12234433333444444444444433 Q ss_pred c---cccccccCHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechh Q lcl|Aclame:pro 112 S---RDPIRQLPPALEAIVE-DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPT 187 (535) Q Consensus 112 ~---k~p~~~~p~~l~~l~~-d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~ 187 (535) . +... ....+..++. ... ...+-.+|.+.+....+.+|.+|+++.....|.+ --++.++|. T Consensus 68 ~~~~~~~~--~~~~l~~lL~~~PN-~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~------------~~L~~l~~~ 132 (409) T protein:vir:96 68 KMYEDYKV--VNTEVSDLLTVSPN-NSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP------------SKLFLLNPD 132 (409) T ss_pred EEeecccc--cchhHHHHHhhhcc-cCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcE------------EEEEEEcCc Confidence 2 2221 2233444443 232 4578899999999999999999999987655532 145555665 Q ss_pred hhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCc Q lcl|Aclame:pro 188 SIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNP 267 (535) Q Consensus 188 ~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 267 (535) .|- ++ .++++. ...|++.. ..|.. .. .+.+ T Consensus 133 ~v~---------------v~-----~~~~~~-----~~~y~~~~--~~g~~--~~----------------~~~~----- 162 (409) T protein:vir:96 133 VVE---------------ML-----IENQSR-----ELYYSIHA--ATGNK--LI----------------VHNM----- 162 (409) T ss_pred eeE---------------EE-----EeCCCc-----EEEEEEEc--CCceE--EE----------------Eccc----- Confidence 541 11 111110 00111110 01110 00 0000 Q ss_pred cceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhcc---Cc--ceeeecC Q lcl|Aclame:pro 268 FKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVF---KD--FKVHLGS 342 (535) Q Consensus 268 l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~---~~--~~i~iG~ 342 (535) ..|-|- +....+...|.+||.-++.. +....... ...+...+.+-.++.-.+....++.. .+ ....-++ T Consensus 163 -evih~r--~~~~~~~~~G~s~l~~~~~~-i~~~~~~~--~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~n~ 236 (409) T protein:vir:96 163 -DMLHFK--HIVASNMVQGISPIDVLKNT-TDFDNAVR--TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEEN 236 (409) T ss_pred -cEEEeC--CCCCCCccccccHHHHHHHH-HHHHHHHH--HHHHHhcCCCceeEEecCCCCCHHHHHHHHHHHHHHhhcC Confidence 111111 11123345678888665443 22222222 22333334433222211111111100 00 0001134 Q ss_pred cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhcccc-ccc-chHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 343 RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSG-GNR-TFGEAQQEEASEQSILSACTKNVSM 416 (535) Q Consensus 343 ~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~-~~~-ta~~a~~~~~~~~S~L~~~a~~~~~ 416 (535) ..++.++.+.++..+..++..... +..+....+++. +...++.... ++. +..+.. ..--+..|.-++.++++ T Consensus 237 g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~--~~f~~~~l~P~~~~ie~ 314 (409) T protein:vir:96 237 GGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELN--RFYLQHTLLPIVKQYEE 314 (409) T ss_pred CCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHH--HHHHHHHHHHHHHHHHH Confidence 456667777676666555544332 222222233322 2333332211 111 111111 12224446666666666 Q ss_pred HHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHH Q lcl|Aclame:pro 417 AFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKA 496 (535) Q Consensus 417 a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i 496 (535) ++++-|=--.. ......|+.+.+=.......+.+.++.+++++|.++.-+.++.+ |. ++...-+ ++ T Consensus 315 ~l~~~Ll~~~~------~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~---g~-~pi~ggD----~~ 380 (409) T protein:vir:96 315 EFNRKLLTKTD------REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE---DL-PPVEGGD----KP 380 (409) T ss_pred HHHhhcCCccc------ccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHh---CC-CCCCCcc----ee Confidence 66543211100 11123344443322222224456677789999999988777654 32 2211001 00 Q ss_pred HhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 497 TVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 497 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) - . ..+..+-+ ...++.. ..+|+.+-+| T Consensus 381 ~---~---~~n~~~~~--~~~~~~~----~~~gG~~n~~ 407 (409) T protein:vir:96 381 L---I---SGDLYPID--TPLELRK----SLKGGDKNVN 407 (409) T ss_pred e---e---cccccccc--cchhhcc----cccCCCCCcC Confidence 0 0 00000000 0000000 0122222222 No 208 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=70.19 E-value=0.21 Score=24.27 Aligned_cols=373 Identities=10% Similarity=0.037 Sum_probs=145.9 Q ss_pred cccc-CCCCCccCHHHHHHHHHHH-HHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPS-LPNVGYQRVEFGEMLPKWR-KIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~-M~~v~~~hp~y~~~~~~w~-~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) .|+| .-...+.-|. .....|- .....+.|. + .+..|. +. ...++.+..+.....+.+. T Consensus 1 Mglf~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~--~~~~~v-----------~~---~~al~~~~V~~~i~~Ia~~ 60 (384) T protein:vir:49 1 MPIFNITNLATESPP--SNQDSFFDITDPEFLDA--L--NGSEWV-----------SA---ETALKNSDLFSIISQLSND 60 (384) T ss_pred CccccccccCccccc--ccchhhccccchhhccc--c--cCCcee-----------ch---hhhhccHHHHHHHHHHHHH Confidence 3433 2111111111 1112221 111111110 0 001111 11 1223333333334444444 Q ss_pred HhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEec Q lcl|Aclame:pro 106 MMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVH 185 (535) Q Consensus 106 l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~ 185 (535) +++..|+ +. -.....+.+..+ ...+-.+|.+.+....+.+|.+++++.....|.+ --+..++ T Consensus 61 ia~l~~~----~~-~~~~~~l~~~PN-~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~------------~~L~~l~ 122 (384) T protein:vir:49 61 LATAKIT----TS-RKQLQGIVDNPS-NNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRD------------MKWEYLR 122 (384) T ss_pred HhhCcee----ee-cchhhhhhhccC-CCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcE------------EEEEEEc Confidence 4444332 21 011123444333 3467899999999999999999999987655431 1455566 Q ss_pred hhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCC Q lcl|Aclame:pro 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG 265 (535) Q Consensus 186 ~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~ 265 (535) |..|- | ...++.+ .. .|++...+ .... ...... T Consensus 123 ~~~v~---------------v-----~~~~~~~---~~--~y~~~~~~--------------~~~~-----~~~~~~--- 155 (384) T protein:vir:49 123 PSQVS---------------F-----NRLDNQN---GL--YYNITFDD--------------PRIP-----PKQHVP--- 155 (384) T ss_pred CceeE---------------E-----EEcCCCc---eE--EEEEEecC--------------cccc-----ceeEec--- Confidence 65541 0 0011110 01 11111000 0000 000000 Q ss_pred CccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeCCCCccchhccC----cceeee Q lcl|Aclame:pro 266 NPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTGLTKDWVEDVFK----DFKVHL 340 (535) Q Consensus 266 ~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G~~~~~~~d~~~----~~~i~i 340 (535) +=.+|-|- +....+...|.+|+..+.. .+........+... ....+.|-.+++--.....++..+ ...-.- T Consensus 156 -~~eVih~~--~~~~~~~~~G~s~i~~~~~-~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 231 (384) T protein:vir:49 156 -QGDILHFR--LLSVDGGLTSVSPLMALGR-ELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKTKQSRSRQAMKQ 231 (384) T ss_pred -CccEEEec--CCCCCCceeeccHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhccc Confidence 00112221 2222334567888866544 33333344444433 345677877776311111111000 000112 Q ss_pred cCcccccCCCCCccceeecCcchhH-HHHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 341 GSRAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSM 416 (535) Q Consensus 341 G~~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~ 416 (535) ....++.++.+.++.-+..++.... .+..+...++++. +...++... ...+++....+.. ..+.+..+..-+.+ T Consensus 232 n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-~~~~~~~~~~~~~-~~~~i~~~l~pi~~ 309 (384) T protein:vir:49 232 MQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGE-GDKQSSLEMIYNI-YFKAVSRFLRPFVS 309 (384) T ss_pred CCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCC-CCccccHHHHHHH-HHHHHHHHHHHHHH Confidence 2334566776666555555554433 2334444455544 334444332 2223333322222 12233333333333 Q ss_pred HHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHH Q lcl|Aclame:pro 417 AFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKA 496 (535) Q Consensus 417 a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i 496 (535) .+++.|.. .+. +.+...+.... ......+-.++.+|.+++..+++.|.+.|+++ + |. .++ T Consensus 310 ~i~~~l~~---~l~---------~~~~~~~~~~~--~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-n----e~-r~~ 369 (384) T protein:vir:49 310 ELSKKLSC---EVD---------ADILPAVDPTG--SNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-K----DL-PEG 369 (384) T ss_pred HHHHHhch---hhh---------hhhhhhhhccc--hHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-h----hH-HHH Confidence 33333321 110 00001100000 11112233567789999999999998888764 2 22 111 Q ss_pred HhchhhcccCCCcCCCCCCCcccccc Q lcl|Aclame:pro 497 TVEFIAKTAAAGKVGDAASGGTNKAK 522 (535) Q Consensus 497 ~~e~~~~~~~~~~~~~~~~~~~~~~~ 522 (535) .+.++.. +|.+|+.= T Consensus 370 ----~~~~p~~-------gGd~~~~~ 384 (384) T protein:vir:49 370 ----ETDSTLK-------GGETNEQY 384 (384) T ss_pred ----cCCCCCC-------CCCCCCCC Confidence 1233222 12222222 No 209 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=70.09 E-value=0.21 Score=24.26 Aligned_cols=382 Identities=11% Similarity=0.029 Sum_probs=144.0 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) |+=-+.+.......-+.|.. .++|.. ...|.. . .+.+.-++| -.+..+-+.++.+.| T Consensus 1 m~~f~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~---------~-----~Al~~~~V~-~~i~~Ia~~iA~lp~ 57 (406) T protein:vir:97 1 MSFFQPLGTSKVSYDDYISS---VLAGDV-----SQKYLG---------V-----SALKNSDIL-TATSIIAGDIARFPL 57 (406) T ss_pred CccccccCCCCCCcchHHHH---HhcCCC-----Cccccc---------c-----hhhccHHHH-HHHHHHHHhhhhCee Confidence 66222222222222222322 222211 111221 1 122223443 234444444444444 Q ss_pred c---cccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCC-CcccchHHHHhccCCcEEEEechh Q lcl|Aclame:pro 112 S---RDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNV-GRPVTVLEQKLGLYRPTITLVHPT 187 (535) Q Consensus 112 ~---k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~-~~~~t~ad~~~~~~rPy~~~~~~~ 187 (535) . +...+.....+..++..-=....+-.+|.+.+....+.+|-+|++|..... +.+ --+..+.|. T Consensus 58 ~~~~~~g~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~------------~~L~~i~p~ 125 (406) T protein:vir:97 58 VKKDVNGDIIHDEDINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQA------------LQFQFYRPS 125 (406) T ss_pred EEEecCccccccchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeE------------EEEEEECCC Confidence 2 111111223355555432335678999999999999999999999976532 221 145555665 Q ss_pred hhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCc Q lcl|Aclame:pro 188 SIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNP 267 (535) Q Consensus 188 ~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 267 (535) +|. + ...+++ .-.|++-... .|.. . ..+. . T Consensus 126 ~v~-----------------v----~~~~~~-----~~~y~~~~~~-~~~~--------------~----~~~~----~- 155 (406) T protein:vir:97 126 ETT-----------------V----EETDNH-----EIVYTFTDML-TAKQ--------------V----KCFA----H- 155 (406) T ss_pred eeE-----------------E----EEcCCc-----eEEEEEEecC-CceE--------------E----EEcc----c- Confidence 541 0 000110 0011111110 0000 0 0000 0 Q ss_pred cceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHH-HhcCceeEeeC---CCCccchhccCc-ceeeecC Q lcl|Aclame:pro 268 FKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAF-VAGQPTAFFTG---LTKDWVEDVFKD-FKVHLGS 342 (535) Q Consensus 268 l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~-~~~~P~~~~~G---~~~~~~~d~~~~-~~i~iG~ 342 (535) ..| .+.....+...|.+|+.-++. .+.......++....+ ..+.|-.++.- ++++..+..... +...-|. T Consensus 156 -evi---h~r~~~~dg~~G~spi~~~~~-~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~ 230 (406) T protein:vir:97 156 -DVI---HWKFFSHDTILGRSPLLSLGD-EIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDARQRARQEFEKMREGS 230 (406) T ss_pred -cEE---EecCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHHHHHHHHHHHHHhccc Confidence 011 111111223457888765443 2333333333333322 22344333221 111110000000 0111233 Q ss_pred c--ccccCCCCCccceeecCcchhHHHHHHHHH---HHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 343 R--AIIPLPQGATAGILQITPNSVPFEAMTHKE---SQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNV 414 (535) Q Consensus 343 ~--~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e---~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~ 414 (535) + ..+.++.+.++..+..++..+ +.++... .+++. +...++..+.......+... .--...|.-++..+ T Consensus 231 n~g~~~vl~~g~~~~~l~~~~~d~--q~le~~~~~~~~Ia~afgVPp~~lg~~~~~~~~e~~~~--~f~~~~l~P~~~~i 306 (406) T protein:vir:97 231 VGGSPLVFDSTMEYTPLEIDTNVL--QLITSNNFSTAQIAKALRVPSYKLGVNSPNQSVAQLME--DYVTNDLPFYFDAI 306 (406) T ss_pred ccCceeecCCCceEEEccCCHHHH--HHHHHHHhhHHHHHHHhCCCHHHcCCCCCcchHHHHHH--HHHHHHHHHHHHHH Confidence 2 345567666666665554433 3333322 23322 22333321111111111111 12234466677777 Q ss_pred HHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCH-HHHH Q lcl|Aclame:pro 415 SMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAK-AETE 493 (535) Q Consensus 415 ~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~-eee~ 493 (535) ++++++-|---..+ ....|+ |....+....++++.++++.|.++....++.+ |.-+-+... ++.. T Consensus 307 e~~l~~kll~~~~~-------~~~~i~----fd~~~~~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~~~gD~~~ 372 (406) T protein:vir:97 307 TSELGLKTLNDKDR-------RLYHIE----FDTRSVTGRNVDEIVKLVNNQILTPNQGLVEL---GKQKSTDPNMDRYQ 372 (406) T ss_pred HHHHhhhhcChhhc-------cceeEE----EecCccchhhHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCCCCeEe Confidence 77766533111100 112233 33333445567888899999999998887765 322111100 1000 Q ss_pred HHHHhchhhcccCCCcCCCCC------CCcccccccccccCCCC Q lcl|Aclame:pro 494 GKATVEFIAKTAAAGKVGDAA------SGGTNKAKLNNGNGGGN 531 (535) Q Consensus 494 ~~i~~e~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 531 (535) ...+..+.+.. .+++.+...+|+.+.+. T Consensus 373 ----------~~~n~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 373 ----------SSLNYVFLDKKEEYQDKVGIKGKGGEVNAEEDKS 406 (406) T ss_pred ----------eccCccchhcccccccccccccCCCCCCCCCCCC Confidence 00111111110 00000111111111111 No 210 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=69.90 E-value=0.22 Score=24.23 Aligned_cols=393 Identities=11% Similarity=0.080 Sum_probs=142.0 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF 111 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF 111 (535) |.-=+-....=.+.+..|..- ...+. ..|-+. ....+.. -....++..+..+-....+-+.++.+.| T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~--~~~~~-------~~~~~~-~~~~~~~---v~~~~a~~~~~v~~~i~~Ia~~ia~lp~ 67 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQ--SASKL-------YDFSPW-KNKSFWG---VINNTLETNETIFSAITKLSNSMASLPL 67 (409) T ss_pred CcccccchhhhhHHhhhhhcC--Ccccc-------cccccc-cCccccc---cchhhhhccHHHHHHHHHHHHhhhhCce Confidence 762111111111222222200 00000 001110 0000000 0012334433333333444444444433 Q ss_pred c---cccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhh Q lcl|Aclame:pro 112 S---RDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTS 188 (535) Q Consensus 112 ~---k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~ 188 (535) . +... ....+..++..==..-.+-.+|.+.+....+.+|.+|+++.....|.+. -+..++|.. T Consensus 68 ~~~~~~~~--~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~------------~L~~l~~~~ 133 (409) T protein:vir:94 68 KMYEDYKV--VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPS------------KLFLLNPDV 133 (409) T ss_pred eEeecccc--cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEE------------EEEEEcCce Confidence 2 2211 2233445443211245688999999999999999999999876544321 344555554 Q ss_pred hhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCcc Q lcl|Aclame:pro 189 IINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPF 268 (535) Q Consensus 189 Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l 268 (535) |- ++ .+.++. . ..|++- . ..|. .. ..+.+ T Consensus 134 v~---------------v~-----~~~~~~---~--~~y~~~-~-~~g~--------------~~----~~~~~------ 162 (409) T protein:vir:94 134 VE---------------ML-----IENQSR---E--LYYSIH-A-ATGN--------------KL----IVHNM------ 162 (409) T ss_pred eE---------------EE-----EeCCCc---E--EEEEEE-c-CCce--------------EE----EEccc------ Confidence 41 10 011110 0 001110 0 0010 00 00000 Q ss_pred ceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCc-eeEee-C--CCCccchhccCc-ceeeecC Q lcl|Aclame:pro 269 KEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQP-TAFFT-G--LTKDWVEDVFKD-FKVHLGS 342 (535) Q Consensus 269 ~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P-~~~~~-G--~~~~~~~d~~~~-~~i~iG~ 342 (535) . ++.+ +....+...|.+||.-++. .+........+ .+...+.+ ..++. + ++++..+...+. ....-++ T Consensus 163 d---vih~r~~~~~~~~~G~s~l~~~~~-~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~ 236 (409) T protein:vir:94 163 D---MLHFKHIVASNMVQGISPIDVLKN-TTDFDNAVRTF--NLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEEN 236 (409) T ss_pred c---EEEecCCCCCCccccccHHHHHHH-HHHHHHHHHHH--HHHhcCCCCeeEEecCCCCCHHHHHHHHHHHHHHhhcC Confidence 0 1112 1122334567888765543 22222222222 23333333 33332 1 111111100000 0011233 Q ss_pred cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhcccccccc-hHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 343 RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRT-FGEAQQEEASEQSILSACTKNVSMA 417 (535) Q Consensus 343 ~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~t-a~~a~~~~~~~~S~L~~~a~~~~~a 417 (535) ..++.++.+.++..+..++..... +..+....+++. +...++.... ..+ ++.......--+..|.-++..++++ T Consensus 237 g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ 315 (409) T protein:vir:94 237 GGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARS-NTNFAKNEELNRFYLQHTLLPIVKQYEEE 315 (409) T ss_pred CCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CCCcccHHHHHHHHHHHHHHHHHHHHHHH Confidence 445567776666655555443321 222222233322 2333332211 111 1111111122344466666666666 Q ss_pred HHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHH Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKAT 497 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~ 497 (535) ++.-|=--..+ .....|+.+.+=.......+.+.++.+++++|.++.-..++.+ |. ++...-++ +- T Consensus 316 ln~~Ll~~~~~------~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~---g~-~p~~ggD~----~~ 381 (409) T protein:vir:94 316 FNRKLLTKTDR------EKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE---DL-PPVEGGDK----PL 381 (409) T ss_pred HHHhhCCcccc------cCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCcCe----Ee Confidence 65433111111 1122344443222222234456777889999999988777654 32 22211010 00 Q ss_pred hchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 498 VEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 498 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) . ..+..+-+. ..+.. ...+|+..-+| T Consensus 382 ~------~~n~~~~~~--~~~~~----~~~kGG~~n~~ 407 (409) T protein:vir:94 382 I------SGDLYPIDT--PLELR----KSLKGGDKNVN 407 (409) T ss_pred e------ccccccccc--chhhc----ccccCCCCCcC Confidence 0 001111110 00000 01222222223 No 211 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=69.86 E-value=0.22 Score=24.22 Aligned_cols=393 Identities=11% Similarity=0.072 Sum_probs=144.4 Q ss_pred CCCCCc-cCHHHHHHHHHHHHHHHHhcC-hHHHH-HHHhhhCCCCCCCCCChhhHHHHHHHHh-hhccchhHHHHHHHHh Q lcl|Aclame:pro 32 LPNVGY-QRVEFGEMLPKWRKIMDCLSG-QEAIK-AKREEYLPMPSVDSRDEEQRRRYETYLQ-RAIFYNVTARTLDGMM 107 (535) Q Consensus 32 M~~v~~-~hp~y~~~~~~w~~i~d~~~G-~~~~~-~~g~~YLP~~~~~~~~~E~~~~Y~~rl~-rA~~~n~~~~tv~~l~ 107 (535) |+++=. --++- +..-.+ ...+. --|..+=+.+ .. +..... .|.-.+.+-..|+.++ T Consensus 1 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~----~~------~~~~~~~~a~~~~~v~~~v~~ia 60 (460) T protein:vir:10 1 MANRIIRALREL----------TGLDNKFNDAFIKYIGQTFTKYD----NN------GKTYLEQGYNINPDVYSCISQMA 60 (460) T ss_pred CchhHHHHHhhh----------hccCCCchHHHHHhhccccCCCc----cc------hhhhhHHHHhcchHHHHHHHHHH Confidence 665221 10000 000000 01111 0111111110 11 111111 1122233334444444 Q ss_pred hhhhcccccc-------c-------------------------------cCHHHHHHHhccCCCCCCHHHHHHHHHHHHH Q lcl|Aclame:pro 108 GQVFSRDPIR-------Q-------------------------------LPPALEAIVEDIDGEGVSLDQQAKKALGYTM 149 (535) Q Consensus 108 G~lF~k~p~~-------~-------------------------------~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l 149 (535) +.+.+-|..+ . .......|+..-+ .-.+-.+|.+.+....+ T Consensus 61 ~~iA~lp~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN-~~~t~~~f~~~~~~~ll 139 (460) T protein:vir:10 61 AKTVAVPYTIKVVKDTKAYQQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPN-PTQTWADIYSLYKTYMR 139 (460) T ss_pred HhhhhCceEEEeccCCccchhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCC-CCCCHHHHHHHHHHHHh Confidence 4433222211 0 0011112333222 34678999999999999 Q ss_pred hhCcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEE Q lcl|Aclame:pro 150 GFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWR 228 (535) Q Consensus 150 ~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~r 228 (535) .+|.+|+++..+..+.. ..+| -+..++|..|. +..+++++.......++ T Consensus 140 l~Gnay~~i~r~~~~~~---------~G~~~~L~~l~~~~v~---------------------v~~~~~~~~~~~~~~~~ 189 (460) T protein:vir:10 140 LNGNCYFYLMSPDDGIN---------AGVPSQMYVLPAHLIK---------------------IVLKDDINLLSTDSPIK 189 (460) T ss_pred hcCCeEEEEEecCCCcc---------CceeEEEEEEcCceEE---------------------EEEcCCCceeeeeeeee Confidence 99999999987654321 0112 24445554441 11112222111111110 Q ss_pred EEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc---CCCcCCCCcchHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 229 VLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP---LDNNADIDHPPLLDLCEVNIGHYRNSA 305 (535) Q Consensus 229 vl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~---~~~~~~~~~ppL~dLA~ln~~hy~~~s 305 (535) - |. ....+. .. ..+ +=..|-|-..+. .+.+...|.+|+.-++ -.+....... T Consensus 190 ~--------~~-----~~~~g~-~~----~~~------~~evih~r~~~~~~~~~~~~~~G~sp~~~~~-~~i~~~~~~~ 244 (460) T protein:vir:10 190 S--------YM-----LIQGDQ-FI----EFN------EDEVIHTKYANPNFDLQGSHLYGMSPIRAIL-RNINSQNSTI 244 (460) T ss_pred E--------EE-----EecCce-eE----Eec------ccceEEEecCCCCcccccCccccccHHHHHH-HHHHHHHHHH Confidence 0 10 000000 00 000 001122211111 1123456788886654 3344444445 Q ss_pred HHHHHHHHh-cCceeEeeCCCCccchhcc---Cc--ceeeecC---cccccCCCCCccceeecCcchhH-HHHHHHHHHH Q lcl|Aclame:pro 306 DYEEMAFVA-GQPTAFFTGLTKDWVEDVF---KD--FKVHLGS---RAIIPLPQGATAGILQITPNSVP-FEAMTHKESQ 375 (535) Q Consensus 306 dl~~~l~~~-~~P~~~~~G~~~~~~~d~~---~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~-~~~l~~~e~q 375 (535) ++....+.. +.|-.+++. +....++.. .. +...-|. ..++.++.+.++.-+..++.... .+..+....+ T Consensus 245 ~~~~~~f~ng~~~~~i~~~-~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~ 323 (460) T protein:vir:10 245 DNNVKTMQNGGVFGFIHGG-STGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYDQKA 323 (460) T ss_pred HHHHHHHhcCCCcceeeec-CCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 555444443 445444442 221111110 00 0011122 23556776666655555444332 1333333344 Q ss_pred HHH---HhhhhhcccccccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCc Q lcl|Aclame:pro 376 MIA---MGANLLVKSGGNRTFGEAQQE---EASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAA 449 (535) Q Consensus 376 m~~---lga~~l~~~~~~~ta~~a~~~---~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~ 449 (535) ++. +...++.... ..+.+-+..+ ..-....|.-++..++++++.-| +..+.. .....|++ ||... T Consensus 324 Ia~~fgVPp~~lg~~~-~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl--~~~~~~----~~~~~i~~--d~~~l 394 (460) T protein:vir:10 324 ICNALGWSDKLLNNNE-GGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKF--IKRFKG----YENAVIEW--DISEL 394 (460) T ss_pred HHHHhCCCHHHhCCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCcccc----cCCceEEe--ecchh Confidence 433 2333343211 1121112221 12234457777777777776533 122111 11222333 34333 Q ss_pred cCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCC-----CCCCcccccc Q lcl|Aclame:pro 450 RLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGD-----AASGGTNKAK 522 (535) Q Consensus 450 ~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~-----~~~~~~~~~~ 522 (535) ........++.+++++|.++...+++.+ |+-+-++..-+ ++- .+.+..+-+ ...+++|..+ T Consensus 395 ~~l~~d~~~~~~~~~~g~~T~NE~R~~~---g~~pi~~~~gD---~~~------~~~n~~~~~~~~~~~~~~~~nq~~ 460 (460) T protein:vir:10 395 PEMQTDMVAMASWLNTIPVTPNEIRIAM---KYETLNQDGMD---IVF------MPSNKVRIDDVSNNLIDSAFNQNQ 460 (460) T ss_pred hhHHHHHHHHHHHHhCCCCCHHHHHHHh---CCCCCCCCCCC---eee------ecccccchhhcccccCCCcccCCC Confidence 2223456777888999999988776544 32211111111 000 001111111 0011111111 No 212 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=67.50 E-value=0.25 Score=23.87 Aligned_cols=343 Identities=14% Similarity=0.135 Sum_probs=138.7 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHH--HHHHhhhccchhHHHHHHHHhhh Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRY--ETYLQRAIFYNVTARTLDGMMGQ 109 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y--~~rl~rA~~~n~~~~tv~~l~G~ 109 (535) |.=.+ | + +++- .. ....|.|......... ..... +.-++. +.+-..|+.+++. T Consensus 1 M~~~~---~-f------~~r~--~~--------~~~~~~~~~~~~~~~~-~~~~v~~~~al~~----~av~~cv~~ia~~ 55 (359) T protein:vir:10 1 MSILN---P-F------ERRS--SI--------TPNNYYPFMVQNGSIV-PNSLVDATEALKN----SDLYAVTSLISSD 55 (359) T ss_pred Ccccc---h-h------hccc--cC--------CCCcchhhhhcccccc-CCcccCHHHhhcc----hHHHHHHHHHHHh Confidence 55111 1 0 0000 00 0011111110000000 00000 111222 2223344444444 Q ss_pred hhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhh Q lcl|Aclame:pro 110 VFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSI 189 (535) Q Consensus 110 lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~I 189 (535) +-+.+ -.+ .+.+..|...-+. -.+-.+|.+.+....+.+|-+|++|.....|.+. -+..++|..| T Consensus 56 ia~~p-~~~-~~~~~~L~~~PN~-~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~------------~l~~l~~~~v 120 (359) T protein:vir:10 56 IAGTR-FIG-NQVFTSVLNNPSH-LTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMK------------ELRLIPSNAI 120 (359) T ss_pred hhcCc-ccc-chHHHHHhhcccc-cCCHHHHHHHHHHhccccCceEEEEEECCCCeEE------------EEEEeCCceE Confidence 43322 222 2234445554443 3677899999999999999999999765544211 1333344332 Q ss_pred hcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccc Q lcl|Aclame:pro 190 INWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFK 269 (535) Q Consensus 190 i~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 269 (535) .+ ...+++ -.|++...+ .+ ..+.+ + +=. T Consensus 121 -----------------~i----~~~~~~------~~y~~~~~~-~~--~~~~~----------------~------~~e 148 (359) T protein:vir:10 121 -----------------TI----DLTDDT------LTYEVNQFD-DY--PSAKY----------------N------ASE 148 (359) T ss_pred -----------------EE----EEcCCe------EEEEEEecC-Cc--eEEEE----------------c------ccc Confidence 11 111111 112211110 00 00000 0 001 Q ss_pred eeEEEEe--ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCC---CccchhccCc--ceeeec Q lcl|Aclame:pro 270 EIPFQFI--GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLT---KDWVEDVFKD--FKVHLG 341 (535) Q Consensus 270 ~IP~v~~--~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~---~~~~~d~~~~--~~i~iG 341 (535) .|-|-.+ +....+...|.+|+.-++. .+...+....+.... ...+.|-.+++--. +++..+..+. +...-| T Consensus 149 vih~~~~~~~~~~~dg~~G~spi~~~~~-~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~~~ 227 (359) T protein:vir:10 149 MIHVKIMAYGVDTLHNLVGHSPLESLTS-EIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKANGG 227 (359) T ss_pred eEEeccCCCCCCccCccccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCc Confidence 2222211 1112244568888876544 333333333444333 44456777775311 1111010000 112223 Q ss_pred Cc--ccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 342 SR--AIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVS 415 (535) Q Consensus 342 ~~--~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~ 415 (535) .+ .++.++.+.++..++.++..... +..+....+++. +...++.. .+...++.+.++... ...|..+...+. T Consensus 228 ~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~-~~~~~~~~~~~e~~~-~~~l~~~l~p~~ 305 (359) T protein:vir:10 228 NNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNG-TGDQQSSLDQIKDLY-VNALNRFIEPLI 305 (359) T ss_pred cccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCC-CCcccccHHHHHHHH-HHHHHHHHHHHH Confidence 22 35667877777766665544322 222222333332 23334422 222223333333222 223444444444 Q ss_pred HHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC Q lcl|Aclame:pro 416 MAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVA 483 (535) Q Consensus 416 ~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl 483 (535) +.+++.|.-- +. .+. ..-.+|. +......+.+++++|.++.-+.++.|-.-.|+ T Consensus 306 ~~l~~~l~~~---~~--~~~-----~~~~~~d----~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 306 SELRIKCDSS---IG--VDM-----SPITDYS----NSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHHhhhh---hc--ccc-----hhhhhcC----HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 4444433211 10 111 1111222 23345567789999999999998888777776 No 213 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=64.38 E-value=0.3 Score=23.44 Aligned_cols=373 Identities=9% Similarity=0.016 Sum_probs=138.2 Q ss_pred Cccc-ccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHH Q lcl|Aclame:pro 26 SGLG-PSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLD 104 (535) Q Consensus 26 ~~~~-~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~ 104 (535) -||= .+++ -..+.++... | +.+.+++.... .| .+ ... ... ++-+..+-.+..+-+ T Consensus 1 MGl~~~~~~-~~~~~~~~~~----~--~~~~~~~~~~~--~~-~~--------vt~--~~a----l~~~~v~~~i~~Ia~ 56 (394) T protein:vir:62 1 MGLRDRFSN-YLFKKAEKRG----Y--LDNVLGKSIRY--SG-VY--------VTD--SNI----LQSSDVYELLQDISN 56 (394) T ss_pred Cchhhhhhh-hccCCCCchh----h--hhhhhhccccc--Cc-cc--------cCh--hhh----hccHHHHHHHHHHHH Confidence 1110 0000 0001111000 1 22333332110 00 00 000 001 112222233333333 Q ss_pred HHhhhhh---ccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEE Q lcl|Aclame:pro 105 GMMGQVF---SRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTI 181 (535) Q Consensus 105 ~l~G~lF---~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~ 181 (535) .++.+.| ++.-.......+..|+..-+ ...+-.+|.+.+....+.+|-++++++....+ T Consensus 57 ~iA~lp~~v~~~~g~~~~~~~~~~Ll~~PN-~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~----------------- 118 (394) T protein:vir:62 57 QMVLADIVVEDEFGNEIKDDIALQILRNPN-NYLTQSEFIKLMTNTYLLEGETFPILNGAQIH----------------- 118 (394) T ss_pred hhcccceEEEcCCCcccchhhHHHHhccCC-CCCCHHHHHHHHHHHHHhcCCeEEEEecceee----------------- Confidence 3333322 11111111122334555443 44678889999999999999999998632111 Q ss_pred EEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeee Q lcl|Aclame:pro 182 TLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPT 261 (535) Q Consensus 182 ~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~ 261 (535) . |. + +.. .. ++ .+.|. |+. +.. ..+. T Consensus 119 -~--------~~-----~------~~~---~~-~~------------------~~~~~---~~~---~~~------~~~~ 144 (394) T protein:vir:62 119 -L--------AS-----N------VFT---EL-DD------------------NLVEH---FNI---GGH------EIPP 144 (394) T ss_pred -c--------cc-----c------ceE---EE-CC------------------ceEEE---Eee---CCE------Eech Confidence 0 00 0 000 00 00 00010 100 000 0000 Q ss_pred ccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEee--CCCCccch--hccCc- Q lcl|Aclame:pro 262 DGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFT--GLTKDWVE--DVFKD- 335 (535) Q Consensus 262 ~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~--G~~~~~~~--d~~~~- 335 (535) + . ++.+.....+...|.+|+..+... +........+...+ ...+.|..+++ +....+.. +.... T Consensus 145 ~-------e--iih~r~~~~d~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~ 214 (394) T protein:vir:62 145 C-------M--IRHVKNIGADHLRGKGILDLGRDT-LEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINA 214 (394) T ss_pred h-------h--eEEecCcCCCCccccChHHHHHHH-HHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHH Confidence 0 0 122221122335677887766543 44444444444443 44568877665 22111111 00000 Q ss_pred --ceeeecC---cccccCCCCCccceeecCcchhHHHHHHHHH---HHHHH---HhhhhhcccccccchHHHHHHHHHHH Q lcl|Aclame:pro 336 --FKVHLGS---RAIIPLPQGATAGILQITPNSVPFEAMTHKE---SQMIA---MGANLLVKSGGNRTFGEAQQEEASEQ 404 (535) Q Consensus 336 --~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e---~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~ 404 (535) ..+ -|. ..++.++.+.++++.++.......+.++... .+++. +...++.... .+ ........--+ T Consensus 215 ~~~~~-~g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~--~s-n~e~~~~~~~~ 290 (394) T protein:vir:62 215 ILDQL-ESIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTELI--KE-DIEKAMMYIHN 290 (394) T ss_pred HHHHh-ccccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCCC--Cc-CHHHHHHHHHH Confidence 001 122 2334567777777777664433333343332 22322 2233342211 11 11111122234 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC Q lcl|Aclame:pro 405 SILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVAS 484 (535) Q Consensus 405 S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~ 484 (535) ..|.-++.+++++++..| ++.. ....+.|+++.+-. .+.+ ....++.+++.+|.++-..+++.+ |+-+ T Consensus 291 ~~l~P~~~~ie~~l~~kl------l~~~-~~~~~~~~fd~~~~-~~~~-~~~~~~~~~~~~g~~T~NE~R~~~---gl~p 358 (394) T protein:vir:62 291 KAVRPIMKNFEDHLSLLF------YAQN-SGKRIKFKINILDF-VTYS-NKTNIGYNLVRTAITSPDNVADML---GFPK 358 (394) T ss_pred HHHHHHHHHHHHHHhhhh------cCcc-ccCceEEEechhhh-cCHH-HHHHHHHHHHhCCCcCHHHHHHHh---CCCC Confidence 557777777777776433 2211 12234444443211 1222 345667789999999988776644 3221 Q ss_pred ccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 485 EDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 485 ~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) -+...- +++-. ..+..+-+. . .++ +..+.|+....| T Consensus 359 ~~~~~g---d~~~~------~~n~~~~~~----~-~~~-~~~~kgge~~en 394 (394) T protein:vir:62 359 QNTKES---QAIYI------SNDVTEIGK----K-EAT-DGSLGGGEENEN 394 (394) T ss_pred CCCCCC---Ceeec------ccccccccc----c-ccc-cccCCCCCCCCC Confidence 111000 00000 000011000 0 000 112233333333 No 214 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=59.14 E-value=0.4 Score=22.77 Aligned_cols=447 Identities=12% Similarity=0.083 Sum_probs=154.2 Q ss_pred CCcchhhhhhhhhcceecCCCC-----CCCCcccccCCCCCccCHHHHHHHHH---HHHHHHHhcChHHHHHHHhhhCCC Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQA-----PPTSGLGPSLPNVGYQRVEFGEMLPK---WRKIMDCLSGQEAIKAKREEYLPM 72 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~M~~v~~~hp~y~~~~~~---w~~i~d~~~G~~~~~~~g~~YLP~ 72 (535) |-.+ --|-.+.. ++-+++.. .-+.++.++.- .+.++-...... =...+...++... ..-|-++ T Consensus 1 ~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~k~~~~~~~a~~~~~~~~~~~----~~~~~~r 71 (551) T protein:vir:80 1 MKNK-LGLFESIR-LVGVNKSDAVKHIEVDDNYSIAIQ---QREQEQISKAMNNKEVAYSQPVIGSMSA----NPGFKTK 71 (551) T ss_pred Cchh-hhhHHHhh-hccCChhhcccccccccceeeecc---cccHHHHHHhhccCcceeecccccceec----CcccccC Confidence 2111 11111111 11111111 11122222221 111221111000 0001111111110 1112222 Q ss_pred CCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc------------------ccccccc-CH------HHHHHH Q lcl|Aclame:pro 73 PSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS------------------RDPIRQL-PP------ALEAIV 127 (535) Q Consensus 73 ~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~------------------k~p~~~~-p~------~l~~l~ 127 (535) +... +.. .-.+.+...--.++++.+|+.++..+.. ++..... +. .++.|+ T Consensus 72 ~~~~--~~~---~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l 146 (551) T protein:vir:80 72 PSIR--NNQ---DLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFI 146 (551) T ss_pred cccc--Chh---HHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHHHH Confidence 2111 010 1111122222246666776666554421 0111111 11 244555 Q ss_pred hccCCCC----CCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccce Q lcl|Aclame:pro 128 EDIDGEG----VSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVI 203 (535) Q Consensus 128 ~d~d~~G----~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~L 203 (535) ....... .+..+|++.+....|.+|.+++++-....|.++ -+..++|..| T Consensus 147 ~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~------------~L~~l~p~~V-------------- 200 (551) T protein:vir:80 147 EKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMV------------RFVAKDPTTI-------------- 200 (551) T ss_pred HhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEE------------EEEEeCCcee-------------- Confidence 5444332 377899999999999999999998776555321 2444555444 Q ss_pred eEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc-CCCc Q lcl|Aclame:pro 204 SLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP-LDNN 282 (535) Q Consensus 204 t~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~-~~~~ 282 (535) .+ ..+.+++..+....|. +.. .+.... ..+.+ ..|=|..... .... T Consensus 201 ---~v----~~~~~g~~~~~~~~y~------------~~~----~g~~~~----~~~~~------eiiH~~~n~~~~~~~ 247 (551) T protein:vir:80 201 ---FF----ATTADGKIPDNGNRFV------------QVI----DQKIVA----TFNAR------EMAFAVRNPRSDIYA 247 (551) T ss_pred ---EE----EECCccccccCceEEE------------EEe----CCcEEE----EEccc------ceEEecccCCCCccc Confidence 11 1111221100000110 000 010000 00000 0111111011 1122 Q ss_pred CCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEe--eCC---CCccchhccCc-ceeeecCccc---ccC-CCC Q lcl|Aclame:pro 283 ADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFF--TGL---TKDWVEDVFKD-FKVHLGSRAI---IPL-PQG 351 (535) Q Consensus 283 ~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~--~G~---~~~~~~d~~~~-~~i~iG~~~~---~~l-p~~ 351 (535) ...|.||+.-++..-..+ +....+... ....++|..++ .|- +++..+..... ....-|..+. +.+ +++ T Consensus 248 ~~~G~spi~~a~~~i~~~-~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g 326 (551) T protein:vir:80 248 TGYGYPELEIALKQFIAH-ENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVSAED 326 (551) T ss_pred ccccccHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCccccccCCC Confidence 345889987655443333 333444433 34456787555 332 22111110000 0112233222 223 333 Q ss_pred CccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhccccc-------ccchHHHHHHH---HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 352 ATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGG-------NRTFGEAQQEE---ASEQSILSACTKNVSMA 417 (535) Q Consensus 352 ~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~-------~~ta~~a~~~~---~~~~S~L~~~a~~~~~a 417 (535) .++.-+..++..... +..+....+++. +...++..... ..+.+.+.++. .-....|.-++..++.+ T Consensus 327 ~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ 406 (551) T protein:vir:80 327 VKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDF 406 (551) T ss_pred ceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH Confidence 344433333333321 222323333332 23333321111 11112233322 23355677777788877 Q ss_pred HHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCC---ccCCH----- Q lcl|Aclame:pro 418 FRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVAS---EDDAK----- 489 (535) Q Consensus 418 ~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~---~~~~~----- 489 (535) +++.|- -. . +..+.|.++. .. ..+..+...+.+++.+|.++.-++++.+ |+-+ ..|.. T Consensus 407 ln~~L~--~~-~-----~~~~~f~f~~--~~-~~~~~~~~~~~~~~~~g~lT~NE~R~~~---gl~P~~egGD~~~~~~~ 472 (551) T protein:vir:80 407 INKHIV--AE-F-----GDKYTFQFVG--GD-IKSELESVKILAEKAKVAMTVNEVRKEL---NLPGDVIGGDIPLNGVI 472 (551) T ss_pred HHhhhc--cc-c-----CCceEEEeec--cC-hhhHHHHHHHHHHHhcCCcCHHHHHHHh---CCCCCCCCCceeecccc Confidence 776542 11 1 1234444331 11 1223344456678888999988887644 3311 11111 Q ss_pred -------------H--HHHHHHHh--chh---hcccCCCcCCCCCCCcc----cccccccccCCCCCCCC Q lcl|Aclame:pro 490 -------------A--ETEGKATV--EFI---AKTAAAGKVGDAASGGT----NKAKLNNGNGGGNQAGN 535 (535) Q Consensus 490 -------------e--ee~~~i~~--e~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 535 (535) + ..++++.. +.. ..+++...+.+....++ ...+...++..+.+.++ T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (551) T protein:vir:80 473 VQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDTTGDIGKDGQRKDKDNANAGKQGMK 542 (551) T ss_pred cccccccccccCcchhhhhhccccccCcCCCCCCCCCCCCCCccccCCCccccccccCccccchhhhhcC Confidence 0 00011000 000 00111111111111111 11112222222223333 No 215 >protein:vir:95821 Length: 763 # NCBI annotation: 94 kDa protein # Family: family:all:1548 # MgeID: mge:1586 # MgeName: N4 # Cross-refs: genbank:acc:YP_950537;genbank:gi:119952228;genbank:GeneID:5075648 Probab=55.98 E-value=0.47 Score=22.40 Aligned_cols=465 Identities=9% Similarity=0.047 Sum_probs=173.7 Q ss_pred hhhhhhcceecCCCCCCCCccc-ccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHH Q lcl|Aclame:pro 8 IRRDVQSKVLIPPQAPPTSGLG-PSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRY 86 (535) Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y 86 (535) .-..-++. +|||-|. +-+- +.-+| |+....+..+....++ .....+.+...+|-....+-..+ - T Consensus 1 ~~~~~~~~--~~~~~~~-~~~~~~~~~~----~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~ 65 (763) T protein:vir:95 1 MEQNTDSM--VPLPDPS-QATKLTSWKN----ELSLQALKADLDAAKP---SHTAMMIKVKEWNDLMRIEGKAK-----P 65 (763) T ss_pred CCcCccCc--CCCcccc-chhcCCCCCC----hHHHHHHHHHHHhhhc---chhHHHHHHHHHHHhhhccccCc-----c Confidence 22222332 4555442 2221 33333 5555544444332222 23333333333332111110000 0 Q ss_pred HHHH-hhhccchhHHHHHHHHhhhhhc----ccccccc-C---HH----------HHH-HHhccCCCCCCHHHHHHHHHH Q lcl|Aclame:pro 87 ETYL-QRAIFYNVTARTLDGMMGQVFS----RDPIRQL-P---PA----------LEA-IVEDIDGEGVSLDQQAKKALG 146 (535) Q Consensus 87 ~~rl-~rA~~~n~~~~tv~~l~G~lF~----k~p~~~~-p---~~----------l~~-l~~d~d~~G~~L~~~~~~~~~ 146 (535) ..-. ..++.++-++++++.+.+.+.+ .+..+++ | +. +.. |.+. ++=..++..+++ T Consensus 66 ~~~~grs~vv~~~v~~~ve~~~~~l~~~f~~~~~~~~~~P~~~~D~~~A~q~t~~~n~~~~~~-----~~~~~~~~~~~~ 140 (763) T protein:vir:95 66 PKVKGRSQVQPKLVRRQAEWRYSALTEPFLGSNKLFKVTPVTWEDVQGARQNELVLNYQFRTK-----LNRVSFIDNYVR 140 (763) T ss_pred cccCCCccccCHHHHHHHHHHHHHHHHhhcCCCcEEEEecCCcchHHHHHHHHHHHHHHHhhc-----CchhhHHHHHHH Confidence 0000 3467789999999999888743 3333332 1 10 112 2222 223566778899 Q ss_pred HHHhhCcEEEEEeec----CCCcccch---------------HH---------------------H-------------- Q lcl|Aclame:pro 147 YTMGFGRAAIFTDYP----NVGRPVTV---------------LE---------------------Q-------------- 172 (535) Q Consensus 147 ~~l~~G~~~vlVD~p----~~~~~~t~---------------ad---------------------~-------------- 172 (535) .+|..|...|=|+.. ........ ++ + T Consensus 141 ~~l~~~~gv~k~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (763) T protein:vir:95 141 SVVDDGTGIVRVGWNREIRKEKQEVPVFSLFPIQTQEQADALQQALQLRTDNPRGYEENVDEAIKESVRFFDETGQATYA 220 (763) T ss_pred HHhhcCcceEEEeeeeeeeeeeeeehhhhhccccchhHHHHHHHHHHhhhhhhccccccccchhhhhhhhccccCcceee Confidence 999999887776432 10000000 00 0 Q ss_pred -----------HhccCCcEEEEechhhhhcceeeecCCccceeEEEEE------------EEE------eecCC------ Q lcl|Aclame:pro 173 -----------KLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQ------------ENV------LAQDD------ 217 (535) Q Consensus 173 -----------~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~------------E~~------~~~~d------ 217 (535) .....+|.+..++|++++ |.-.-..-...-.++..+ +.+ .+..+ T Consensus 221 ~~~~~~~~~~~~~~k~~p~ie~V~p~d~~-iDp~a~sD~~Da~~~~~~~~~t~~dL~~~~~~y~~~~~~~~~~~~~~~~~ 299 (763) T protein:vir:95 221 VQTGTTTTEVEVPLANHPTVEMLNPENII-IDPSCQGDINKAMFAIVSFETCKADLLKEKDRYHNLNKIDWQSSAPVNEP 299 (763) T ss_pred ecccceeEEEEEEecCceEEEeecHHHhe-ecCCCCCchhhCceEeeEEeccHHHHHhccCCccccchhcchhccccccc Confidence 001247888888888876 322110000111111110 000 00000 Q ss_pred ----------CcccceeeEEEEEee------cCCceEEEEEEeeeccCCccccccceeeeccCCC--ccceeEEEEeccC Q lcl|Aclame:pro 218 ----------GFETTYVQQWRVLQL------NAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGN--PFKEIPFQFIGPL 279 (535) Q Consensus 218 ----------~f~~~~~~~~rvl~l------~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~--~l~~IP~v~~~~~ 279 (535) .|..+...+++|++. +.+|..+.++-. .......+...+ +.+.+||+.+... T Consensus 300 ~~~~~~~~~~~~~d~~~~~V~v~E~y~~~d~~gdg~~~~~~v~----------~~g~~iL~~~~~p~~~~~~PFv~~~~~ 369 (763) T protein:vir:95 300 DHATTTPQEFQISDPMRKRVVAYEYWGFWDIEGNGVLEPIVAT----------WIGSTLIRLEKNPYPDGKLPFVLIPYM 369 (763) T ss_pred cccccchhhccCCCcccceEEEEEeeeeeccCCcceeEEEEEE----------EEcCeeeecccccccCCCcCEEEecce Confidence 111111122333221 112222111100 001111222333 4477899865432 Q ss_pred -CCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEee-CCCCccchhccCcceeeecCcccccCCCCCc---- Q lcl|Aclame:pro 280 -DNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFT-GLTKDWVEDVFKDFKVHLGSRAIIPLPQGAT---- 353 (535) Q Consensus 280 -~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~-G~~~~~~~d~~~~~~i~iG~~~~~~lp~~~~---- 353 (535) .....+|.+.+..+.+++..++...+-+.+++..+..|...+. |.-+. .+. +...+...+.+-.++. T Consensus 370 p~~~~~~G~gi~~~~~d~Qr~~N~~~~~~~d~l~~~~~~~~~v~~gav~~--~d~-----~~~~pg~v~~v~~g~~~~~~ 442 (763) T protein:vir:95 370 PVKRDMYGEPDAELLGDNQAVLGAVMRGMIDLLGRSANGQRGMPKGMLDA--LNS-----RRYREGEDYEYNPTQNPAQM 442 (763) T ss_pred eecCcccCCchHHHhhHHHHHHHHHHHHHHHHHHhhcCCcEEeecccccc--hhh-----hcccCCceEEeeCCCChhhh Confidence 3344667888889999999999999999999998888865443 22111 111 1111222222221211 Q ss_pred cceeecCcchhHHH-HHHHHHHHHHHH-hhhhh----cccccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH Q lcl|Aclame:pro 354 AGILQITPNSVPFE-AMTHKESQMIAM-GANLL----VKSGGNRTFGEAQQEEASEQSILSACTKNVSMA----FRKALR 423 (535) Q Consensus 354 ~~~~e~~~~~l~~~-~l~~~e~qm~~l-ga~~l----~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a----~~~~lr 423 (535) ..+..+....-... .+...+..+..+ |..-. .....+.|++............+..++.++.++ .+++|. T Consensus 443 ~~~~~~p~~~~~~~~~l~~~~~~~e~~TGv~~~~~G~~~~~~~~tat~v~~l~qa~~~~~~~~~r~~~~~~k~l~~~~l~ 522 (763) T protein:vir:95 443 IIEHKFPELPQSALTMATLQNQEAESLTGVKAFAGGVTGESYGDVAAGIRGVLDAASKREMAILRRLAKGMSEIGNKIIA 522 (763) T ss_pred cccccCCCCcchHHHHHHHHHHHHHHhhCcchhhcCcCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 12222222211112 222222222222 22211 112224566554433333334455566666655 455666 Q ss_pred HHHHHcCCCCCCceeEE------EEe-----cccCC------ccCCHHHHHHHHHHHhc--CCCCHHHHHHHHHh-CCCC Q lcl|Aclame:pro 424 WANQFQTGIVNDETVEY------NLN-----TDFPA------ARLTPNERAELILEWQQ--GAITFKEMRAGLRR-AGVA 483 (535) Q Consensus 424 ~~a~~~g~~~~~~~~~v------~~n-----~df~~------~~~d~~~~~al~~l~~~--G~is~et~~~~L~r-~gvl 483 (535) ++..|.... .-+.| .++ .+|.. ...+.+.+..+..|.+. ..++......-|.+ .++. T Consensus 523 Li~q~~d~~---rviRI~g~e~v~v~~~~~~~~~DV~V~~~~as~~~q~~~~l~~ll~~l~~~~~~~~~~~il~~~~d~~ 599 (763) T protein:vir:95 523 MNAVFLAEH---EVVRITNEEFVTIKREDLKGNFDLEVDISTAEVDNQKSQDLGFMLQTIGPNVDQQITLNILAEIADLK 599 (763) T ss_pred HHHhhCCCC---cEEEEeCCccccccHHHhcCCcceEEecccchHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHhhh Confidence 777776421 11111 111 12221 11122223333333222 12222111111111 0100 Q ss_pred CccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 484 SEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 484 ~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) . ..+....++.. ++. +.. .++. -.+.++-. T Consensus 600 ~----~~~~~~~lr~~---q~~----~d~-------~~q~----qaqle~~~ 629 (763) T protein:vir:95 600 R----MPKLAHDLRTW---QPQ----PDP-------VQEQ----LKQLAVEK 629 (763) T ss_pred c----hhhhHHHHHhc---CCC----ccc-------hhhh----HHHHHHHH Confidence 0 00111111110 000 000 0000 00000000 No 216 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=54.84 E-value=0.49 Score=22.26 Aligned_cols=387 Identities=12% Similarity=0.055 Sum_probs=149.4 Q ss_pred CCcchhhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCCh Q lcl|Aclame:pro 1 MARKRTTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDE 80 (535) Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~ 80 (535) |--+|.-.| . +|.+-| .-. .| +.++++|... ..| .|. + T Consensus 1 m~~~~~~~~---------------~--~~~~~~-------~~~----~~--~~~~~g~~~s--~~~-~~v--------~- 38 (419) T protein:vir:80 1 MFFSRQLLS---------------N--LGQTQP-------GSG----GW--VSALLGSARS--EAG-QVV--------T- 38 (419) T ss_pred CCccccccc---------------c--cCcCCC-------Ccc----hh--hHHhhccccc--ccC-ccc--------C- Confidence 221111111 1 111111 000 11 0122222111 011 111 1 Q ss_pred hhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---ccc--ccc-cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcE Q lcl|Aclame:pro 81 EQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDP--IRQ-LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRA 154 (535) Q Consensus 81 E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p--~~~-~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~ 154 (535) -+.-++.+..+-.+..+-+.++++.|. +.. .-. ....+..++..-=....+-.+|.+.+....+.+|.+ T Consensus 39 -----~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna 113 (419) T protein:vir:80 39 -----PASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNS 113 (419) T ss_pred -----hHHhhccHHHHHHHHHHHHhhccCceEEEEecCCCcccccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCe Confidence 112223333344555555555555553 111 111 122355554322224567889999999999999999 Q ss_pred EEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecC Q lcl|Aclame:pro 155 AIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNA 234 (535) Q Consensus 155 ~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~ 234 (535) |+++.....|.+ --+..++|..|- +.... T Consensus 114 ~~~i~r~~~G~~------------~~L~~i~~~~v~---------------------i~~~~------------------ 142 (419) T protein:vir:80 114 YSFIDRDQDGVI------------QGLYPLDNEAVT---------------------VMKGP------------------ 142 (419) T ss_pred EEEEEECCCCcE------------EEEEEecCceEE---------------------EEECC------------------ Confidence 999987654431 135555555541 00011 Q ss_pred CceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHH Q lcl|Aclame:pro 235 EGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFV 313 (535) Q Consensus 235 ~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~ 313 (535) ++.+. |+..... . .+. .. ++++.....+...|.+|+.-++. .+.+.....++... ... T Consensus 143 ~~~~~---y~~~~~~--~------~~~-------~~--i~h~~~~~~d~~~G~s~i~~~~~-~i~~~~~~~~~~~~~f~n 201 (419) T protein:vir:80 143 DLKPM---YRVAGAD--P------LPQ-------RL--VHHVRWMSINGYTGLSPVLLHAN-AIGHAQAIQQYAGKSFMN 201 (419) T ss_pred CceEE---EEEcCcc--c------cch-------hh--eEEecCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhc Confidence 11111 1111000 0 000 01 11122122234567888766553 34444444444433 344 Q ss_pred hcCceeEeeCC---CCccchhc---cCc--ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH--- Q lcl|Aclame:pro 314 AGQPTAFFTGL---TKDWVEDV---FKD--FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA--- 378 (535) Q Consensus 314 ~~~P~~~~~G~---~~~~~~d~---~~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~--- 378 (535) .+.|-.+++-- .....++. ... +...-|. ..++.++.+.++.-+..++..... +..+...++++. T Consensus 202 g~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fg 281 (419) T protein:vir:80 202 GTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYK 281 (419) T ss_pred CCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhC Confidence 57787776521 11101110 000 0111232 235667777666655555544322 222222333332 Q ss_pred Hhhhhhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHH Q lcl|Aclame:pro 379 MGANLLVKS-GGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERA 457 (535) Q Consensus 379 lga~~l~~~-~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~ 457 (535) +...++... .++.+..+ .....--...|.-+..++++++++.| +.. .......|+++.+=.........+. T Consensus 282 VPp~llg~~~~~t~~n~e-~~~~~f~~~~l~P~~~~ie~~l~~kl--l~~-----~~~~~~~i~fd~~~l~~~d~~~~~~ 353 (419) T protein:vir:80 282 IPAHMVNELERATFSNIE-HQSLQFVIYTLLPWVKRHEQAKTRDL--LLP-----SERKQYFIEYNLAGLLRGDQSSRYA 353 (419) T ss_pred CCHHHhcCCCCCCcccHH-HHHHHHHHHHHHHHHHHHHHHHhhhc--cCc-----cccCCeEEEEechhhhccCHHHHHH Confidence 233333221 11111111 11112234456777777777776533 111 0111233444432222222234456 Q ss_pred HHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 458 ELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 458 al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ++-+++++|.++.-+.++.+ |. ++...-++.. + +.+... .+..+...+...+|+..+ T Consensus 354 ~~~~~~~~G~~T~NE~R~~~---g~-~p~~gGD~~~--~--------~~n~~~-------~~~~~~~~~~~~~~~~~~ 410 (419) T protein:vir:80 354 AYAVGRQWGWLSINDIRRLE---NM-PPVKGGDIYL--S--------PMNMVD-------ASKPQPIPMGKTEPTKAA 410 (419) T ss_pred HHHHHHhCCCcCHHHHHHHh---CC-CCCCCcceee--e--------cccccc-------ccccccccCCCCCchhhh Confidence 67778899999988777543 32 1110000000 0 000000 000000011111112222 No 217 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=54.44 E-value=0.5 Score=22.22 Aligned_cols=393 Identities=8% Similarity=0.005 Sum_probs=149.7 Q ss_pred ccccCCCCCcc-CHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQ-RVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 28 ~~~~M~~v~~~-hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) .|++= .+-.+ .+. ....+.-+.+.+++... ...+.... .+..++.+..+-....+-+.+ T Consensus 1 Mg~f~-~lf~r~~~~---~~~~~~~~~~~~~~~~~----------~~~g~~v~------~~~al~~~~v~~~i~~Ia~~i 60 (414) T protein:vir:44 1 MVFFS-GLFQRKSDA---PVTTPAELADAIGLSYD----------TYTGKQIS------SQRAMRLTAVFSCVRVLAESV 60 (414) T ss_pred Cchhh-hhhccCccC---cccchhhHhHhhccCcc----------ccCCceec------hhhhhccHHHHHHHHHHHHHh Confidence 33321 11111 111 11111112222222110 00000111 122344444344444455555 Q ss_pred hhhhhc---cccc---cccCHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 107 MGQVFS---RDPI---RQLPPALEAIVE-DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 107 ~G~lF~---k~p~---~~~p~~l~~l~~-d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) ++..|. +... ......+..++. ..+ ...+-.+|.+.+....+.+|.+++++... .+. | T Consensus 61 a~~p~~~~~~~~~~~~~~~~~~~~~lL~~~PN-~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~-------------~ 125 (414) T protein:vir:44 61 GMLPCNLYHLNGSLKQRATGERLHKLISTHPN-GYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGE-------------V 125 (414) T ss_pred ccCceEEEEecCCceeecccchHHHHHHhhcc-cCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCc-------------E Confidence 555442 2211 111233445443 333 45788899999999999999999998543 232 2 Q ss_pred -EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccce Q lcl|Aclame:pro 180 -TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKH 258 (535) Q Consensus 180 -y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~ 258 (535) -+..++|..|. +++ .+++ . ..|++... +|.. + . T Consensus 126 ~~L~~l~~~~v~---------------~~~------~~~~---~--~~y~~~~~--~g~~--~----------------~ 159 (414) T protein:vir:44 126 AELLPVDPGCVV---------------PKL------NSSW---E--PVYQVTFP--DGST--D----------------V 159 (414) T ss_pred EEEEEEcCceEE---------------EEE------CCCC---c--EEEEEEec--CceE--E----------------E Confidence 34555555541 111 1110 0 01111110 1110 0 0 Q ss_pred eeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCC---CCccchhccC Q lcl|Aclame:pro 259 VPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGL---TKDWVEDVFK 334 (535) Q Consensus 259 ~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~---~~~~~~d~~~ 334 (535) ++.+ ..|- +.....+...|.+|+.-++. .+.......++...+ ...+.|..++..- +++......+ T Consensus 160 ~~~~------evih---~~~~~~d~~~G~s~i~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~ 229 (414) T protein:vir:44 160 LSQE------DIWH---VRTLTLDGLVGLNPIAYARE-AISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERLKK 229 (414) T ss_pred Eccc------cEEE---ecCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHH Confidence 0000 1111 11111223467888766543 344444444444443 3456677776642 2211111100 Q ss_pred c-ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 335 D-FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSI 406 (535) Q Consensus 335 ~-~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~ 406 (535) . ....-|. ..++.++.+.++..+..++..... +..+-...+++. +...++.......-++.......--+.. T Consensus 230 ~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~ 309 (414) T protein:vir:44 230 DFEERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYS 309 (414) T ss_pred HHHHHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHH Confidence 0 0011122 235567777666655554443322 222222233322 2333333211111111111111222445 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 407 LSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASED 486 (535) Q Consensus 407 L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~ 486 (535) |.-++.+++++++..|- .. . ......|+++.+=.........+.++-+++++|.++.-..++.+ |+ ++. T Consensus 310 l~P~~~~ie~~ln~~L~-----~~-~-~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~---gl-~p~ 378 (414) T protein:vir:44 310 LVPYLTRIEQRINTGLV-----RK-S-KQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLE---DM-NPR 378 (414) T ss_pred HHHHHHHHHHHHHhhcC-----Cc-c-ccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCC Confidence 66677777776665331 11 1 11123344444322222223456677789999999988777543 42 221 Q ss_pred CCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 487 DAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 487 ~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) .--++. .+....... +....+.+.++++.. ..++++ T Consensus 379 ~ggD~~--~~~~n~~~~---~~~~~~~~~~~~~~~------~d~~~~ 414 (414) T protein:vir:44 379 PGGDVY--LTPMNMTTK---PSDGSKAGKQKDNAN------ADETTS 414 (414) T ss_pred CCccee--ccccccccc---CCccccCCCCCCCCC------CCCCCC Confidence 110100 000000000 001111111222222 222222 No 218 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=52.84 E-value=0.54 Score=22.03 Aligned_cols=385 Identities=11% Similarity=0.058 Sum_probs=134.7 Q ss_pred HHHHHHHHHHHhcC-hHHHHHHHh----hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhh---ccccc Q lcl|Aclame:pro 45 MLPKWRKIMDCLSG-QEAIKAKRE----EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVF---SRDPI 116 (535) Q Consensus 45 ~~~~w~~i~d~~~G-~~~~~~~g~----~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF---~k~p~ 116 (535) |.+.= ++.-.-.+ ...+.++.. .+.|... .... + -....+++.+..+-.+..+-+.++.+.| ++... T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~-v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~~ 75 (409) T protein:vir:93 1 MAKEN-IVTRIKKKLIDNWIDQSTSKLYDFSPWKN-RSFW--G-VINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) T ss_pred CCccc-hhhhhhhhhhhhhhccccccccccccccC-cccc--c-cchhhhhccHHHHHHHHHHHHhhhhCceeEeecccc Confidence 22210 00000000 000000000 0111000 0000 0 0012233333333333333334443333 22221 Q ss_pred cccCHHHHHHHh-ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceee Q lcl|Aclame:pro 117 RQLPPALEAIVE-DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTK 195 (535) Q Consensus 117 ~~~p~~l~~l~~-d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~ 195 (535) ....+..++. ..+ ...+-.+|.+.+....+.+|-+|+++.....|.+. -+..++|..|- T Consensus 76 --~~~~~~~lL~~~PN-~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~------------~L~~l~~~~v~----- 135 (409) T protein:vir:93 76 --VNTEVSDLLTVSPN-NSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPS------------KLFLLNPDVVE----- 135 (409) T ss_pred --ccchHHHHHhhhcc-cCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEE------------EEEEEcCceeE----- Confidence 2334555543 222 45788999999999999999999999876554321 34445554441 Q ss_pred ecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEE Q lcl|Aclame:pro 196 LVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQF 275 (535) Q Consensus 196 ~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~ 275 (535) + ..++++. ...|++- . .+|. .. ..+.+ . +++ T Consensus 136 ----------~-----~~~~~~~-----~~~y~~~-~-~~g~--------------~~----~~~~~-------e--Vih 166 (409) T protein:vir:93 136 ----------M-----LIENQSR-----ELYYSIH-A-ATGN--------------KL----IVHNM-------D--MLH 166 (409) T ss_pred ----------E-----EEeCCCc-----EEEEEEE-c-CCce--------------EE----EEccc-------c--EEE Confidence 1 0111110 0011110 0 0010 00 00000 0 111 Q ss_pred e-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCCCccchhccC--ccee---eecCcccccCC Q lcl|Aclame:pro 276 I-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLTKDWVEDVFK--DFKV---HLGSRAIIPLP 349 (535) Q Consensus 276 ~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~~~~~~d~~~--~~~i---~iG~~~~~~lp 349 (535) + +....+...|.+|+.-++. .+........+ .+...+.|-.++.-......++... ...+ .-++..++.++ T Consensus 167 ~r~~~~~~~~~G~s~i~~~~~-~i~~~~~~~~~--~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~vl~ 243 (409) T protein:vir:93 167 FKHIVASNMVQGISPIDVLKN-TTDFDNAVRTF--NLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGILFQE 243 (409) T ss_pred eCCCCCCCccccccHHHHHHH-HHHHHHHHHHH--HHHhcCCCCceEEecCCCCCHHHHHHHHHHHHHHhhcCCCeeecC Confidence 1 1122234567888765543 22222222222 2333444432222111111111000 0001 11334455677 Q ss_pred CCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 350 QGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQE---EASEQSILSACTKNVSMAFRKAL 422 (535) Q Consensus 350 ~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~---~~~~~S~L~~~a~~~~~a~~~~l 422 (535) .+.++.-+..++..... +..+....+++. +...++.... +++-+..+ ..--...|.-++..++++++.-| T Consensus 244 ~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~---~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L 320 (409) T protein:vir:93 244 PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARS---NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) T ss_pred CCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC---CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 66666655544443321 222222233322 2233332211 11111111 11223345566666665554322 Q ss_pred HHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhh Q lcl|Aclame:pro 423 RWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIA 502 (535) Q Consensus 423 r~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~ 502 (535) =--..+ .....|+.+.+=.......+.+.++-+++.+|.++.-++++.+ |. ++..--+ ++-. T Consensus 321 l~~~~~------~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~---g~-~p~~ggD----~~~~---- 382 (409) T protein:vir:93 321 LTKTDR------EKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE---DL-PPVEGGD----KPLI---- 382 (409) T ss_pred CCcccc------cCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCcC----eeee---- Confidence 110000 1123344443322222224456677789999999988877654 32 2211000 1000 Q ss_pred cccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 503 KTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+..+-+. ..... ...+||..-+| T Consensus 383 --~~n~~~~~~-----~~~~~-~~~~gG~~n~~ 407 (409) T protein:vir:93 383 --SGDLYPIDT-----PLELR-KSLKGGDKNVN 407 (409) T ss_pred --ccccccccc-----chhhc-ccccCCCCCcC Confidence 001111100 00000 00111111112 No 219 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=49.32 E-value=0.64 Score=21.64 Aligned_cols=391 Identities=8% Similarity=0.001 Sum_probs=151.4 Q ss_pred CC--CCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhh Q lcl|Aclame:pro 32 LP--NVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQ 109 (535) Q Consensus 32 M~--~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~ 109 (535) |- .+=.++.+-. ...+.-+.+.+++...- ..|. + .+ -+.+++.+..+-....+-+.++++ T Consensus 1 ~~f~~~f~r~~~~~--~~~~~~~~~~~~~~~~~-~~g~-~--------v~------~~~~l~~~~v~~~i~~Ia~~iA~~ 62 (413) T protein:vir:48 1 MFFSGLFQRKSDAP--VTTPAELAEAIGLSYDT-YTGK-R--------IS------SQRAMRLTAVYSCVRVLAESVGML 62 (413) T ss_pred CccchhhccCccCC--ccchHHHHHhhhcCccc-ccCc-e--------ec------hhhhhccHHHHHHHHHHHHhhhhC Confidence 22 1211111110 11122233333331100 0010 0 11 123344444445555555555654 Q ss_pred hh---ccccccc---cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc-EEE Q lcl|Aclame:pro 110 VF---SRDPIRQ---LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TIT 182 (535) Q Consensus 110 lF---~k~p~~~---~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~ 182 (535) .| ++..... ....+..++..-=....+-.+|.+.+....+.+|.+++++... .|. | .+. T Consensus 63 p~~~~~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~-------------~~~L~ 128 (413) T protein:vir:48 63 PCSLYKISGTLKTRVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGE-------------VVELL 128 (413) T ss_pred ceEEEEecCCcceeecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCc-------------EEEEE Confidence 43 3322211 2334566654222245788899999999999999999998632 222 2 344 Q ss_pred EechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeec Q lcl|Aclame:pro 183 LVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTD 262 (535) Q Consensus 183 ~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~ 262 (535) .++|..|. + ..+.+. ...|++... +|..+ .+ +. T Consensus 129 ~l~~~~v~-----------------~----~~~~~~-----~~~y~~~~~--~g~~~--~~----------------~~- 161 (413) T protein:vir:48 129 PIDPGCVE-----------------P----KLNSQW-----QPVYQVTFP--DGSVD--VL----------------TQ- 161 (413) T ss_pred EEcCceEE-----------------E----EEcCCc-----eEEEEEEec--CceEE--EE----------------cc- Confidence 45554431 0 001111 011211110 11100 00 00 Q ss_pred cCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCC---ccchhccCc-ce Q lcl|Aclame:pro 263 GNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTK---DWVEDVFKD-FK 337 (535) Q Consensus 263 ~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~---~~~~d~~~~-~~ 337 (535) -..|-| .....+...|.+|+.-++.. +.......++...+ ...+.|-.+++.-.. +..+...+. +. T Consensus 162 -----~evih~---~~~~~d~~~G~s~i~~~~~~-i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~~~~~~~~ 232 (413) T protein:vir:48 162 -----DEIWHV---RTLTLDGLVGLNPIAYAREA-ISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERLKKDFEE 232 (413) T ss_pred -----ccEEEe---cCcCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHH Confidence 011111 11112335678887776643 44444445555444 445778777774221 111111000 01 Q ss_pred eeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---Hhhhhhcccc-cccchHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 338 VHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSG-GNRTFGEAQQEEASEQSILSA 409 (535) Q Consensus 338 i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~-~~~ta~~a~~~~~~~~S~L~~ 409 (535) ..-|. ..++.++.+.++.-+..++..... +..+....+++. +...++.... ++.+. .......--...|.- T Consensus 233 ~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n-~e~~~~~f~~~~i~P 311 (413) T protein:vir:48 233 RHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNN-IEELGLGFINYSLVP 311 (413) T ss_pred HhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCccc-HHHHHHHHHHHHHHH Confidence 11232 234567777666655555443321 222222233322 3334443211 11111 111111122334556 Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCH Q lcl|Aclame:pro 410 CTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAK 489 (535) Q Consensus 410 ~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~ 489 (535) ++.++++++++-|= .. .......|+++.+=.........+.++.+++++|.++--.+++.+ |. ++..-- T Consensus 312 ~~~~ie~~l~~~L~--~~-----~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~-~p~~gg 380 (413) T protein:vir:48 312 YLTRIEQRINTGLV--RE-----SKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLE---DM-NPRPGG 380 (413) T ss_pred HHHHHHHHHHhhcc--Cc-----cccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---CC-CCCCCc Confidence 66666666654221 00 011123444443322222223456677789999999988877654 32 221100 Q ss_pred HHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 490 AETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 490 eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) ++.. +..... .....++..+..++.++.+-.+ + T Consensus 381 D~~~--~~~n~~----~~~~~~~~~~~~~~~~~~~~~~-----~ 413 (413) T protein:vir:48 381 DVYL--TPMNMT----TSPSAGDDNGKKKESGDADKTA-----S 413 (413) T ss_pred ceee--cccccc----ccccccccCCCCCCCCCccccC-----C Confidence 0000 000000 0011111111111111111111 1 No 220 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=47.05 E-value=0.71 Score=21.38 Aligned_cols=418 Identities=15% Similarity=0.138 Sum_probs=150.4 Q ss_pred ccccCCCCCccCHHH-HHH-HHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEF-GEM-LPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 28 ~~~~M~~v~~~hp~y-~~~-~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) .|+.-.=..+.+..- ... ...|..+......-..... .+.... -...++.+..+-....+-+. T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~V~------~~~al~~~~V~~~v~~Ia~~ 65 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAA---------SGETVT------PHDALQVSAVFASVRLLSET 65 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhccccc---------CCceec------hHHhhccHHHHHHHHHHHHh Confidence 221100000000000 000 0001111111000000000 000000 12233333334445555556 Q ss_pred Hhhhhhc---ccc-c-ccc-CHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 106 MMGQVFS---RDP-I-RQL-PPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 106 l~G~lF~---k~p-~-~~~-p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) ++++.|. +.. . .++ ...+-.++. ..-...+-.+|.+.+....+.+|-+|++|-.. .+.++ T Consensus 66 iA~lp~~~~~~~~~~~~~~~~~~l~~~ln-~~~n~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~------------ 131 (457) T protein:vir:13 66 IATLPLSTYSKRGGSRKEIVTPEWLDYPN-AEPGGMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIV------------ 131 (457) T ss_pred hccCceEEEEecCCcccccccchHHHhcc-ccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEE------------ Confidence 6665543 111 0 011 122333332 22225678899999999999999999988543 23221 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceE-EEEEEeeeccCCccccccce Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNY-QVERWRRETQEEMYYSYSKH 258 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y-~v~~w~~~~~~~~~~~~~~~ 258 (535) -+..+.|.+|.-+ ...++.+. ...|+.+.....|.- .+..+ T Consensus 132 ~l~~l~p~~v~v~--------------------~~~~~~~~---~~~~~~y~~~~~~~~~~~~~~--------------- 173 (457) T protein:vir:13 132 GLDVLDPTKIHVH--------------------MVMVDGLR---RKVFEAYDIDADGNEVLLGWF--------------- 173 (457) T ss_pred EEEEEccCceEEE--------------------EecCCCcc---ceeEEEEEEecCCceeeEEee--------------- Confidence 2344444443111 11111111 111222221111110 00000 Q ss_pred eeeccCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCCccchhcc--- Q lcl|Aclame:pro 259 VPTDGNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTKDWVEDVF--- 333 (535) Q Consensus 259 ~~~~~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~~~~~d~~--- 333 (535) + +=. ++.+ +....+...|.+|+.-++. .+.......++...+ ...+.|-.+++-- ....++.. T Consensus 174 -~------~~d---iih~~~~~~~~~~~G~s~i~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gil~~~-~~ls~e~~~~~ 241 (457) T protein:vir:13 174 -T------PRD---VLHIPGMMLPGDFVGCSPISYARE-SIGLALAAQKYGSKFFANGAMPGAVVEVP-GTMSEEGLARA 241 (457) T ss_pred -C------ccc---eEEecCCCCCCccccccHHHHHHH-HHHHHHHHHHHHHHHHhcCCCcceEEEcC-CCCCHHHHHHH Confidence 0 001 1111 1122233578888865553 455555555555443 4456787777632 11111110 Q ss_pred Cc--ceeeecC---cccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHH---HH Q lcl|Aclame:pro 334 KD--FKVHLGS---RAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQE---EA 401 (535) Q Consensus 334 ~~--~~i~iG~---~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~---~~ 401 (535) .. ....-|. ..++.++.+.++..+..++..... +..+....++++ +...++.... ..+...+..+ .+ T Consensus 242 ~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~~~sn~eq~~~~ 320 (457) T protein:vir:13 242 REAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDAT-NSTSWGSGLAEQNIA 320 (457) T ss_pred HHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC-CcccccchHHHHHHH Confidence 00 0011232 345678877777777666544321 222222233322 3344443222 1222112111 12 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCC Q lcl|Aclame:pro 402 SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAG 481 (535) Q Consensus 402 ~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~g 481 (535) --...|.-++..++++++..|- .+.. .....|+++.+=.........+.++.+++++|.++.-++++.+ | T Consensus 321 f~~~tl~P~~~~ie~~ln~~L~--~~~~-----~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~---g 390 (457) T protein:vir:13 321 FTMFSLRPWLERIEAGFNRLLF--AETA-----DRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAE---D 390 (457) T ss_pred HHHHHHHHHHHHHHHHHHHhhc--Cccc-----cCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh---C Confidence 2244466677777766654332 1111 1112234433322222223456677789999999988776544 3 Q ss_pred CCCccCCH-HHHHH-----HHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 482 VASEDDAK-AETEG-----KATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 482 vl~~~~~~-eee~~-----~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +-+-..-. ++... .+......++...+....+..+..+....+.|......++- T Consensus 391 l~Pi~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~ 450 (457) T protein:vir:13 391 MTPLPDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATE 450 (457) T ss_pred CCCCCCCcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccCCC Confidence 22111100 11100 00000000110011000101111111111111110001010 No 221 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=44.40 E-value=0.81 Score=21.09 Aligned_cols=396 Identities=10% Similarity=0.030 Sum_probs=138.3 Q ss_pred ccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHH-HHhhhccchhHHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYET-YLQRAIFYNVTARTLDGM 106 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~-rl~rA~~~n~~~~tv~~l 106 (535) .|+.=. +..+-+.+...-..| + .|..+++... ... ...+.. ++..+..+..+..+-+.+ T Consensus 1 Mg~~~~-~~~~~~~~~~~~~~~--~------------~~~~~~~~~~---~~~--~~~~~~~~~~~~~v~~~i~~ia~~i 60 (423) T protein:vir:81 1 MGFLQK-LGLAPSVVATPEPIE--L------------VGPIFESLKL---STK--NMTVEQIWEDQPHLRTVTTFIARNV 60 (423) T ss_pred CchhHh-hccccccccCccccc--c------------cccccccccc---ccc--hhhHHHHHHhhhHHHHHHHHHHHhH Confidence 111100 111111111111111 0 1111111100 000 001121 122222233333334444 Q ss_pred hhhhh---ccc--cccc--cCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc Q lcl|Aclame:pro 107 MGQVF---SRD--PIRQ--LPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) Q Consensus 107 ~G~lF---~k~--p~~~--~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP 179 (535) +++.| ++. -..+ ....+..|+..-+ ...+-.+|.+.+....+.+|.+|++|.....+... . - T Consensus 61 a~lp~~~~~~~~dg~~~~~~~~~~~~ll~~PN-~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~---------~-~ 129 (423) T protein:vir:81 61 ASLQLQAFERVEDGGRERVREGHLARVCKLAN-SDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTP---------T-L 129 (423) T ss_pred hhCceEEEEEecCCceeeeccchHHHHhhcCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcc---------e-E Confidence 44333 221 1111 1223556666543 45789999999999999999999999754322110 0 0 Q ss_pred EEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccccccee Q lcl|Aclame:pro 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHV 259 (535) Q Consensus 180 y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~ 259 (535) .+..+++.. |..+. ..++++ .-.| ++.....+ .+ ..+ T Consensus 130 ~l~p~~~~~-----------------v~~~~----~~~~~~---~~~Y-----------~~~~~~~~-~g-------~~~ 166 (423) T protein:vir:81 130 DIRPIPVSW-----------------VQRRA----YKDGWG---SLDY-----------IIIESGDN-DG-------RSV 166 (423) T ss_pred EEeecccce-----------------eeeee----ccCCCc---ceEE-----------EEEEecCC-Cc-------eEE Confidence 111122211 11110 111110 0111 11111000 00 000 Q ss_pred eeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCC--------CCccch Q lcl|Aclame:pro 260 PTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGL--------TKDWVE 330 (535) Q Consensus 260 ~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~--------~~~~~~ 330 (535) ... +-.+|=|- +....+...|.+|+.-++. .+........+...+ ...+.|-.++.-- +++..+ T Consensus 167 ~~~----~~evih~r--~~~~~~~~~G~spi~~~~~-~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~ 239 (423) T protein:vir:81 167 KVP----GERVIHRH--GYNPKTMKRGKSPVQSLRD-ILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRT 239 (423) T ss_pred EEc----ccceEEec--CCCCCCccccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHHHH Confidence 000 00111111 2222334467888876553 344444444444333 3456787777521 111100 Q ss_pred hccC--cceee---ecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHH Q lcl|Aclame:pro 331 DVFK--DFKVH---LGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEA 401 (535) Q Consensus 331 d~~~--~~~i~---iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~ 401 (535) ...+ ...+. -.+..++.++.+.++..+..++..... +..+-...+++. +...++.......-++......+ T Consensus 240 ~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn~e~~~~~ 319 (423) T protein:vir:81 240 RFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSNVREFRKA 319 (423) T ss_pred HHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHH Confidence 0000 00111 123356678887777766655543321 111222223322 23334422111111111111112 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHH-hcCCCCHHHHHHHHHhC Q lcl|Aclame:pro 402 SEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEW-QQGAITFKEMRAGLRRA 480 (535) Q Consensus 402 ~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~-~~G~is~et~~~~L~r~ 480 (535) --...|.-++..+++++++.|- .++ + .+.....|+++.+-...........++.+++ .+|.++.-++++.+ T Consensus 320 f~~~~L~P~~~~ie~~l~~~L~--~~~-~--~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~--- 391 (423) T protein:vir:81 320 LYGDNLGSWIRIIQDVMNLFLL--PRV-G--IDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMD--- 391 (423) T ss_pred HHHHHHHHHHHHHHHHHhhhhc--Ccc-c--cccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHh--- Confidence 2234466666677776655441 111 1 1112234554443322221222344444554 45888877666543 Q ss_pred CCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccc Q lcl|Aclame:pro 481 GVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLN 524 (535) Q Consensus 481 gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (535) |+ ++..--++.. .+.+..+++.... .++...+ T Consensus 392 gl-~p~~gGD~~~----------~p~n~~~~~~~~~-~~~~~~t 423 (423) T protein:vir:81 392 NL-PSIDGGDDLA----------RPLNTEFGDSEDA-PGEEVET 423 (423) T ss_pred CC-CCCCCcceee----------cccccccCccCCC-CCCCCCC Confidence 32 2221101000 0111111111000 0000001 No 222 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=39.47 E-value=1 Score=20.55 Aligned_cols=364 Identities=13% Similarity=0.072 Sum_probs=143.9 Q ss_pred ccccCCCCC----ccCHHHHHHHHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHH Q lcl|Aclame:pro 28 LGPSLPNVG----YQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTL 103 (535) Q Consensus 28 ~~~~M~~v~----~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv 103 (535) .|.+-. .. .....+...-+.| ......|. +..... . +.+++. ..+..+| T Consensus 1 Mg~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~--------------~~~~v~---~---~~al~~----~~v~~~i 53 (385) T protein:vir:10 1 MGLLTP-RNFNKRKAKNMVYPSNPAF--FTTTVGGM--------------QLSYVS---A---LSALQN----TNVYSVI 53 (385) T ss_pred Cccccc-hhcccccccccccccchhh--hhhhcccc--------------CccccC---H---HHhhcc----HHHHHHH Confidence 332211 11 1111111111111 01111110 000011 1 112222 3344566 Q ss_pred HHHhhhhhccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEE Q lcl|Aclame:pro 104 DGMMGQVFSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITL 183 (535) Q Consensus 104 ~~l~G~lF~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~ 183 (535) +.+++.+.+-+..+. ......+++..+ ...+-.+|.+.+....+.+|.+++++... + +.+ T Consensus 54 ~~ia~~ia~~p~~v~-~~~~~~ll~~PN-~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~-----------------~-~~~ 113 (385) T protein:vir:10 54 NRIASDVASAHFKTE-NTATLNRLESPS-SLIGRFSFWQGALMQLCLSGNDYIPLVGQ-----------------N-LEH 113 (385) T ss_pred HHHHHHHhhCceeee-ccchhhhhhcCC-CCCCHHHHHHHHHHHhhhcCCeEEEEEcC-----------------c-eeE Confidence 666666555444442 223445555443 34688999999999999999999998621 1 111 Q ss_pred echhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeecc Q lcl|Aclame:pro 184 VHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDG 263 (535) Q Consensus 184 ~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~ 263 (535) +++... .+.. . .+.++ ..|++... . +.... ..+. T Consensus 114 ~p~~~~-----------------~v~~-~-~~~~~------~~~~~~~~--------------~-~~~~~----~~~~-- 147 (385) T protein:vir:10 114 IPNSDV-----------------QINY-L-PGNMG------IVYTVLES--------------N-DRPQM----VLRQ-- 147 (385) T ss_pred eecCCc-----------------eEEE-E-EcCCc------eEEEEEEc--------------C-CceEE----EEcc-- Confidence 111111 1100 0 00010 01111110 0 00000 0000 Q ss_pred CCCccceeEEEEe-c--cCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeCCCC---ccchhccCc- Q lcl|Aclame:pro 264 NGNPFKEIPFQFI-G--PLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTGLTK---DWVEDVFKD- 335 (535) Q Consensus 264 ~~~~l~~IP~v~~-~--~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G~~~---~~~~d~~~~- 335 (535) .. ++++ + ....+...|.||+.-++. .+...+....+.... ...++|..+++--.. +...+.... T Consensus 148 -----~e--iihik~~~~~~~~~~~G~s~i~~~~~-~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~ 219 (385) T protein:vir:10 148 -----DQ--MLHFRLMPDPQYRYLIGRSPLESLQN-ALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREE 219 (385) T ss_pred -----cc--EEEeccCCCCcccccccccHHHHHHH-HHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHH Confidence 01 1222 1 222334567888866544 333334444444333 334578777763211 111111000 Q ss_pred -ceeeecCc--ccccCCCCCccceeecCcchhHH--HHHHHHHHHHHH---Hhhhhhccc-ccccchHHHHHHHHHHHHH Q lcl|Aclame:pro 336 -FKVHLGSR--AIIPLPQGATAGILQITPNSVPF--EAMTHKESQMIA---MGANLLVKS-GGNRTFGEAQQEEASEQSI 406 (535) Q Consensus 336 -~~i~iG~~--~~~~lp~~~~~~~~e~~~~~l~~--~~l~~~e~qm~~---lga~~l~~~-~~~~ta~~a~~~~~~~~S~ 406 (535) +...-|.+ .++.++.+.++..+..++..... +..+....+++. +...++... .++.+.+........-... T Consensus 220 ~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~~~~~~ 299 (385) T protein:vir:10 220 FEKANTGDNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATYLAN 299 (385) T ss_pred HHHHhCccccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHHHHHHH Confidence 11222322 35667777776666665544331 223333344433 233444321 1111111111111111124 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcc Q lcl|Aclame:pro 407 LSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASED 486 (535) Q Consensus 407 L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~ 486 (535) |.-+...++++++..| .+ .. |+++.+-.........+.++-++++.|.++.-+.++.+..-++.+.+ T Consensus 300 l~P~~~~ie~~l~~~l------~~-----~~--~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~ 366 (385) T protein:vir:10 300 LNSYVNPIVDELRLKM------NA-----PD--LELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDN 366 (385) T ss_pred HHHHHHHHHHHHHHhh------CC-----ce--EEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCC Confidence 6666677777666433 11 12 33333222222234456777789999999988888766554432211 Q ss_pred CCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 487 DAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 487 ~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+ . .+..+. ..|+..-.| T Consensus 367 -~~~-----~------~~~~~~------------------~~~g~~~dn 385 (385) T protein:vir:10 367 -LPE-----F------KPLTTQ------------------VKGGDEGDN 385 (385) T ss_pred -Ccc-----c------cCcccc------------------cCCCCCCCC Confidence 100 0 000000 011111111 No 223 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=34.58 E-value=1.3 Score=19.99 Aligned_cols=265 Identities=11% Similarity=0.049 Sum_probs=108.0 Q ss_pred Hhhhh---hccccccccCHHHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEE Q lcl|Aclame:pro 106 MMGQV---FSRDPIRQLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTIT 182 (535) Q Consensus 106 l~G~l---F~k~p~~~~p~~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~ 182 (535) ++++. +++.... -..+..++..-=....+-.+|.+.+....+.+|.+++++..+..|.+ --+. T Consensus 1 ia~l~~~~~~~~~~~--~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~------------~~l~ 66 (278) T protein:vir:78 1 MASLPLKMYEDYKVV--NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP------------SKLF 66 (278) T ss_pred CccceeEEEecCccc--ccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcE------------EEEE Confidence 33332 2222222 22344444322224567888999999999999999999987655432 2455 Q ss_pred EechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeec Q lcl|Aclame:pro 183 LVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTD 262 (535) Q Consensus 183 ~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~ 262 (535) .++|..|. | ...+++. . .++.++.. +|. .. ..+ T Consensus 67 ~l~~~~v~---------------v------~~~~~~~--~---~~y~~~~~-~g~--------------~~----~~~-- 99 (278) T protein:vir:78 67 LLNPDVVE---------------M------LIENQSR--E---LYYSIHAA-TGN--------------KL----IVH-- 99 (278) T ss_pred EECCceeE---------------E------EEcCCCc--e---EEEEEEcC-Cce--------------EE----EEc-- Confidence 55565541 0 0111110 0 01111110 010 00 000 Q ss_pred cCCCccceeEEEEe-ccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHHHHhcCceeEeeCCC---CccchhccC--cc Q lcl|Aclame:pro 263 GNGNPFKEIPFQFI-GPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQPTAFFTGLT---KDWVEDVFK--DF 336 (535) Q Consensus 263 ~~~~~l~~IP~v~~-~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~~P~~~~~G~~---~~~~~d~~~--~~ 336 (535) -.. ++++ +....+...|.||+.-+...-. ..+....+ ....+...|..++..-. ++......+ .. T Consensus 100 -----~~e--vih~~~~~~~~~~~G~s~~~~~~~~i~-~~~~~~~~-~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~ 170 (278) T protein:vir:78 100 -----NMD--MLHFKHIVASNMVQGISPIDVLKNTTD-FDNAVRTF-NLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQ 170 (278) T ss_pred -----ccc--EEEECCCCCCCCeeeccHHHHHHHHHH-HHHHHHHH-HHHHhcCCCcEEEEeCCCCCHHHHHHHHHHHHH Confidence 011 1222 2222344567788766543222 11222222 23344444544444211 111110000 01 Q ss_pred eeeecCcccccCCCCCccceeecCcchhHH-HHHHHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 337 KVHLGSRAIIPLPQGATAGILQITPNSVPF-EAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTK 412 (535) Q Consensus 337 ~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~-~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~ 412 (535) .+ -++..++.++.+.++..+..++..... +..+....+++. +...++....+..-++.......-....|.-++. T Consensus 171 ~~-~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~~~~~~~~~~~~l~P~~~ 249 (278) T protein:vir:78 171 YY-EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVK 249 (278) T ss_pred Hh-ccCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHH Confidence 11 234456667777666655555444332 333333344332 2233332221111111111122233455777777 Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccC Q lcl|Aclame:pro 413 NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARL 451 (535) Q Consensus 413 ~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~ 451 (535) .++++++..|--=.++. .+ ..|+.+ ...+ T Consensus 250 ~i~~~ln~~L~~~~e~~----~g--~~~~f~----~~~l 278 (278) T protein:vir:78 250 QYEEEFNRKLLTKTDRE----KI--GILNLT----LNLI 278 (278) T ss_pred HHHHHHHhhcCChhHhc----CC--ceEEEe----cccC Confidence 77777766541101111 11 223333 2233 No 224 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=33.07 E-value=1.4 Score=19.81 Aligned_cols=376 Identities=9% Similarity=-0.009 Sum_probs=134.1 Q ss_pred HHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhccccc-cccCHHHH Q lcl|Aclame:pro 46 LPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFSRDPI-RQLPPALE 124 (535) Q Consensus 46 ~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~k~p~-~~~p~~l~ 124 (535) ..-|..+......... ..++..+....... ....+.+++.+..+..+..+-+.++...|+-.-. -.....+. T Consensus 1 Mg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~~~~~~~~ 73 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQR-----TLNLTDTVWCSIPS--EKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGEEVRKKNW 73 (395) T ss_pred CchHHHHHhhhccccc-----ccccccchhhcccc--ccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCccccchHH Confidence 2233344443322110 11111111111111 1112345566655566666666666555542110 01223344 Q ss_pred HHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCcccee Q lcl|Aclame:pro 125 AIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVIS 204 (535) Q Consensus 125 ~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt 204 (535) .++..-=..-.+-.+|.+.+....+.+|-||+++.... .|+ +. .|.....+ T Consensus 74 ~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~----------------~~~----~~---~~~~~~~~------ 124 (395) T protein:vir:40 74 YMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEY----------------IYV----AD---SFTKNDKS------ 124 (395) T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCc----------------eee----cC---Cccccccc------ Confidence 44432222346789999999999999999999885221 111 11 11110000 Q ss_pred EEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEeccCCCcCC Q lcl|Aclame:pro 205 LVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGPLDNNAD 284 (535) Q Consensus 205 ~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~ 284 (535) .. +..| ..+ ..+ + |... . ..+. ..|=.+.++. ..... T Consensus 125 --------~~-~~~~-----~~v---~~~--~-~~~~---~------------~~~~-------~evih~r~~~-~~~~~ 161 (395) T protein:vir:40 125 --------LY-ENTY-----TEV---TLK--D-LTLK---K------------EFKE-------SEVLHLTLNN-ESIKS 161 (395) T ss_pred --------cc-ccee-----eee---eec--C-ceee---e------------eecc-------ccEEEeecCC-CCccc Confidence 00 0000 000 000 0 0000 0 0000 0000011111 11111 Q ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHhc--CceeEeeCCCCccch--hccCc------ceeeecCcccccCCCCCcc Q lcl|Aclame:pro 285 IDHPPLLDLCEVNIGHYRNSADYEEMAFVAG--QPTAFFTGLTKDWVE--DVFKD------FKVHLGSRAIIPLPQGATA 354 (535) Q Consensus 285 ~~~ppL~dLA~ln~~hy~~~sdl~~~l~~~~--~P~~~~~G~~~~~~~--d~~~~------~~i~iG~~~~~~lp~~~~~ 354 (535) ...+.+.....+ ++ .......+.+ .|.+.+........+ ...+. .+..-....++.++.+.++ T Consensus 162 ~~~~l~~~~~~~-~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~ 234 (395) T protein:vir:40 162 IIDGFYLLYGDL-LT------AAVNKYKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEI 234 (395) T ss_pred cchhHHHHHHHH-HH------HHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHHHHhhccCCceeecCCCceE Confidence 111111111111 11 1112222233 344444322111111 00000 0111123345667777776 Q ss_pred ceeecCcchhHHHHH----HHHHHHHHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 355 GILQITPNSVPFEAM----THKESQMIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKALRWANQ 427 (535) Q Consensus 355 ~~~e~~~~~l~~~~l----~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~ 427 (535) ..+..+........+ ++...+++. +...++..+.+ ...+.. ..--...|.-++..+++++++-|=--.. T Consensus 235 ~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~~~~s--n~e~~~--~~f~~~~L~P~~~~ie~~l~~kLl~~~~ 310 (395) T protein:vir:40 235 DELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAKGDTV--GLSEQV--NSFLMFSINPIAEMFTDEGNRKFYGRDS 310 (395) T ss_pred EeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhcCCCc--CHHHHH--HHHHHHHHHHHHHHHHHHHHHhcCChhh Confidence 666655544332111 122234433 33444422111 111111 1223455667777777777654411112 Q ss_pred HcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCC Q lcl|Aclame:pro 428 FQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAA 507 (535) Q Consensus 428 ~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~ 507 (535) |. ....|+++.+-.......+.+.++-+++..|.++.-.+++.+ |+- +....+ -+++- ...+ T Consensus 311 ~~------~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~---g~~-pi~~~~--gD~~~------~~~n 372 (395) T protein:vir:40 311 VL------ERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMI---GRE-PVMSPE--TQERF------VTKN 372 (395) T ss_pred hc------CCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHh---CCC-CCCCCC--Cceee------eccc Confidence 21 112344444323222234456667789999999988777644 432 221100 00000 0001 Q ss_pred CcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 508 GKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) ..+.+. ...+.+.|.+.++. || T Consensus 373 ~~~~~~-----~~~~~kgge~~~~~-~~ 394 (395) T protein:vir:40 373 YAPLGE-----NEEDLKGGDINENK-GD 394 (395) T ss_pred cccccc-----cccccCCCCCCCCc-CC Confidence 111110 00111111111111 11 No 225 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=32.40 E-value=1.4 Score=19.74 Aligned_cols=401 Identities=11% Similarity=0.007 Sum_probs=134.8 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhc------ChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLS------GQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDG 105 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~------G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~ 105 (535) |++-=..---....-.+=.+.||.+. |+...+...+-+.|+.- +. .+-|..|..- ...+.+|+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~~----~~--~~l~~~Yr~~----~ia~~iVd~ 70 (449) T protein:vir:10 1 MTDKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELV----TY--ENLYSLYRRG----GIAHGAVEK 70 (449) T ss_pred CchhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCcccC----CH--HHHHHHHhcC----chhHHHHHh Confidence 55310000000111112233444332 44444544333344321 10 1123333322 234566776 Q ss_pred Hhhhhhcccccc----ccCH-----HHHHHHhccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccch-HHHHhc Q lcl|Aclame:pro 106 MMGQVFSRDPIR----QLPP-----ALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTV-LEQKLG 175 (535) Q Consensus 106 l~G~lF~k~p~~----~~p~-----~l~~l~~d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~-ad~~~~ 175 (535) .+....++.|.+ +..+ .++..++.... +.+..-+..+.+-++.+|.++|++.... +...+. .+ .. T Consensus 71 ~~d~~~~~~~~i~~g~~~~~~~~~~~~e~~~~~l~~--~~~~~~l~ea~~~~rl~Gga~i~i~v~d-~~~l~~Pl~--~~ 145 (449) T protein:vir:10 71 LVGKCWQTNPEIIEGDDADDSEDETSWEKKSKQVFT--NRLWRSFAEADRRRLVGRYAGILLHIRD-EKDWNLPAT--KG 145 (449) T ss_pred hhhhhhhcCcccccCccccchhhhHHHHHHHHHHHH--HHHHHHHHHHHHhhhccCcEEEEEEecC-CCCCCcccc--cC Confidence 666666665544 1111 12221111100 1233335556666777898888876421 111110 00 00 Q ss_pred cCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeec-CCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccc Q lcl|Aclame:pro 176 LYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQ-DDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYS 254 (535) Q Consensus 176 ~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~-~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~ 254 (535) +...+|..+...+|. ..+...++ ...|+.-...+|+.-.. +.... T Consensus 146 ~~i~~i~v~~~~~i~-----------------~~~~~~dp~sp~yg~P~~y~v~~~~~----------------g~~~~- 191 (449) T protein:vir:10 146 RGLQKVSVSWAGSLK-----------------VAEWDTGINSKTYGQPKLWKYTERLP----------------NGSSR- 191 (449) T ss_pred cceeeEEeeccccCC-----------------hhhhhcCCCCCCCCCceEEEEeeecc----------------CCCcc- Confidence 112222222222110 00111111 12344322222211100 00000 Q ss_pred ccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHH-------HHHHH----HHHHhhHHHHHHH-----HHHhcCce Q lcl|Aclame:pro 255 YSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLD-------LCEVN----IGHYRNSADYEEM-----AFVAGQPT 318 (535) Q Consensus 255 ~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~d-------LA~ln----~~hy~~~sdl~~~-----l~~~~~P~ 318 (535) .. --|+-..|.|. + .+..+.|-|.. +.... ..+++...-...+ +-+.+.+. T Consensus 192 --~~-----~iH~SRl~~~~--~----~~~~g~~~L~~~yn~l~~~~~~~~~~a~~~l~~~~rq~~~~~~~~~~~~~l~~ 258 (449) T protein:vir:10 192 --RV-----DIHPDRVFILG--D----YSEDAIGFLEPAYNAFVSLEKVEGGSGESFLKNAARQLNVNFEKEIDFTNLAS 258 (449) T ss_pred --ce-----eeccceeEeec--C----CCCCChhHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhH Confidence 00 01333334331 1 01112222221 11111 1111211111111 11111121 Q ss_pred eEeeCCCCccchhcc-CcceeeecCcccccCCCCCccceeecCcchhHHHHHHHHHHHHHHHhhhh---h-cccccccch Q lcl|Aclame:pro 319 AFFTGLTKDWVEDVF-KDFKVHLGSRAIIPLPQGATAGILQITPNSVPFEAMTHKESQMIAMGANL---L-VKSGGNRTF 393 (535) Q Consensus 319 ~~~~G~~~~~~~d~~-~~~~i~iG~~~~~~lp~~~~~~~~e~~~~~l~~~~l~~~e~qm~~lga~~---l-~~~~~~~ta 393 (535) ....|++... +... .-..+.-|.+. +.+.++.++..+..+..++.. .+....++++....-. | ..+.+--.+ T Consensus 259 ~~~~~~e~~~-~~~~~~~~~~~~~~~~-~~i~~~~d~~~~~~~~sgl~d-~l~~~~q~iaaa~~IP~t~L~Gqsp~glns 335 (449) T protein:vir:10 259 LYGVSIDELQ-DKFNEVAGEINRGNDV-LMTTQGATVTPLVTSVADPTA-TYNVNLQTAAAGVDIPTRILIGNQQAERSS 335 (449) T ss_pred HhhCCchHHH-HHHHHHHHHHhccchh-eeecCCcceEEEecccCChhH-HHHHHHHHHHHHhCCCeeeeeccCcccccc Confidence 1111221100 0000 00011113333 234555566666666666643 3555555554432221 2 222221222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHH-------HHHHHHhcC Q lcl|Aclame:pro 394 GEAQQEEASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERA-------ELILEWQQG 466 (535) Q Consensus 394 ~~a~~~~~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~-------al~~l~~~G 466 (535) ++ +...=+..+++....+...++++++++.+-..... +. .+++.+.......+.+.++ +...++++| T Consensus 336 t~---D~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~-~~--d~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag 409 (449) T protein:vir:10 336 TE---DQKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDA-VA--KKAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSG 409 (449) T ss_pred ch---hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCC-CC--ceeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcc Confidence 22 22333455666666788899999987765432222 22 4566666666655544433 222333333 Q ss_pred ---CCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCC Q lcl|Aclame:pro 467 ---AITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQA 533 (535) Q Consensus 467 ---~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (535) .++.+.+++.+ |. +.....+......+ .++ .+.-+-| T Consensus 410 ~~~~~~~~EiR~~~---~~----------------~~~~~~~~~~e~~d--------e~~---~~~d~~a 449 (449) T protein:vir:10 410 DNPAFSREEIRTAA---GY----------------DNDDEEPLGEEDGD--------EED---KATDSAA 449 (449) T ss_pred ccCCcCHHHHHHHh---cc----------------cCCCCCCCCCCCCc--------ccc---ccCCcCC Confidence 44444443322 11 11000000000011 111 1111111 No 226 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=31.59 E-value=1.5 Score=19.64 Aligned_cols=417 Identities=11% Similarity=0.083 Sum_probs=139.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhc-----------ChHH----------HHHHHhhhC-CCCCCCCCC--hh---hHH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLS-----------GQEA----------IKAKREEYL-PMPSVDSRD--EE---QRR 84 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~-----------G~~~----------~~~~g~~YL-P~~~~~~~~--~E---~~~ 84 (535) |+| ...+.++-+|+-. |-.+ ++.-.++-+ .+-+....+ +. +.. T Consensus 1 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 70 (563) T protein:vir:95 1 MAD----------LFKQFRLGKDYGNNSTIAQVPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQAYAEPFIEMMDTNPE 70 (563) T ss_pred Chh----------hhhhhhcccccccccccceeeccCChhhhHhhhhccchhHHHHHhhhccCCCcchhhhHhhhccccc Confidence 222 2222222111100 0000 000000000 000000000 00 000 Q ss_pred HH------------HHHHhhhccchhHHHHHHHHhhhhh--ccccc--------------ccc-C--------HHHHHHH Q lcl|Aclame:pro 85 RY------------ETYLQRAIFYNVTARTLDGMMGQVF--SRDPI--------------RQL-P--------PALEAIV 127 (535) Q Consensus 85 ~Y------------~~rl~rA~~~n~~~~tv~~l~G~lF--~k~p~--------------~~~-p--------~~l~~l~ 127 (535) .| ...+...--.++.+.+++.++..+- ..+.. .+. + ..++.++ T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l 150 (563) T protein:vir:95 71 FRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFI 150 (563) T ss_pred ccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHh Confidence 00 1111111112344555554444332 11000 000 0 1123333 Q ss_pred hccCC----CCCCHHHHHHHHHHHHHhhCcEEEEEee--cCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCcc Q lcl|Aclame:pro 128 EDIDG----EGVSLDQQAKKALGYTMGFGRAAIFTDY--PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKS 201 (535) Q Consensus 128 ~d~d~----~G~~L~~~~~~~~~~~l~~G~~~vlVD~--p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~ 201 (535) .++-- ...+..+|.+.+....+.+|.+++.+-. ...|.+ --+..++|..| T Consensus 151 ~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~------------~~L~pl~p~~V------------ 206 (563) T protein:vir:95 151 VNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKL------------EKFIAVDPSTI------------ 206 (563) T ss_pred hhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCce------------EEEEEeCCcee------------ Confidence 32211 1235778999999999999988886543 222221 13444444443 Q ss_pred ceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc--- Q lcl|Aclame:pro 202 VISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP--- 278 (535) Q Consensus 202 ~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~--- 278 (535) . +..++++.-.+....|+ + ...+.... ..+ -..| +.++.. T Consensus 207 -----~----v~~~~~g~~~~~~~~y~-----------~-----~~~g~~~~----~~~-------~~ev-I~~~~~~~~ 249 (563) T protein:vir:95 207 -----F----YATDKKGKIIKGGKRFV-----------Q-----VVDKRVVA----SFT-------SREL-AMGIRNPRT 249 (563) T ss_pred -----E----EEECCCCceeccceeEE-----------E-----EeCCceeE----Eec-------Ccce-EEEeccCCC Confidence 1 11111211001111111 0 00010000 000 0011 111211 Q ss_pred CCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEee--CC---CCccchhccCc-ceeeecCcc----ccc Q lcl|Aclame:pro 279 LDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFT--GL---TKDWVEDVFKD-FKVHLGSRA----IIP 347 (535) Q Consensus 279 ~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~--G~---~~~~~~d~~~~-~~i~iG~~~----~~~ 347 (535) .......|.|||.-++ ..+.......++...+ ...+.|..+++ |. +++......+. ....-|... .+. T Consensus 250 d~~~~~~G~Spi~~a~-~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~v 328 (563) T protein:vir:95 250 ELSSSGYGLSEVEIAM-KEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVV 328 (563) T ss_pred CcccCcccchHHHHHH-HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEE Confidence 1122456889986554 3444444444444443 34567876654 32 11111100000 001123222 345 Q ss_pred CCCCCccceeecCcchhH-HHHHHHHHHHHHH---Hhhhhhccc-ccc-------cchHHHHHH---HHHHHHHHHHHHH Q lcl|Aclame:pro 348 LPQGATAGILQITPNSVP-FEAMTHKESQMIA---MGANLLVKS-GGN-------RTFGEAQQE---EASEQSILSACTK 412 (535) Q Consensus 348 lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~---lga~~l~~~-~~~-------~ta~~a~~~---~~~~~S~L~~~a~ 412 (535) ++++.++.-+..++.... .+..+....++++ +...++... .+. .+-+.+.++ .+-....|.-+.. T Consensus 329 l~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~ 408 (563) T protein:vir:95 329 MADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLR 408 (563) T ss_pred cCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHH Confidence 677766665555554433 2333333444433 233333211 110 111122222 2233556777777 Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC--CccCCH Q lcl|Aclame:pro 413 NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLT-PNERAELILEWQQGAITFKEMRAGLRRAGVA--SEDDAK 489 (535) Q Consensus 413 ~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d-~~~~~al~~l~~~G~is~et~~~~L~r~gvl--~~~~~~ 489 (535) .++++++..| +..+ +....+. |.-.+.. ..+..++.+++.+|.++.-++++.+ |+- +..+.. T Consensus 409 ~ie~~ln~~L--~~~~------~~~~~~~----f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~---gl~Pi~gGD~~ 473 (563) T protein:vir:95 409 FIEDLVNRHI--ISEY------GDKYTFQ----FVGGDTKSATDKLNILKLETQIFKTVNEAREEQ---GKKPIEGGDII 473 (563) T ss_pred HHHHHHHhhh--chhc------ccccEEE----eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHh---CCCCCCCccee Confidence 7777776533 1121 1122333 3322221 1223345567889999988887654 321 111110 Q ss_pred --------------------HHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 490 --------------------AETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 490 --------------------eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +..+.++..-......+.+.+.+.....++....+.|--+++.+-| T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (563) T protein:vir:95 474 LDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQIKGDD 539 (563) T ss_pred ecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcccccccccccccc Confidence 0011111100000000111111111111111111111112221111 No 227 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=31.59 E-value=1.5 Score=19.64 Aligned_cols=417 Identities=11% Similarity=0.083 Sum_probs=139.1 Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHhc-----------ChHH----------HHHHHhhhC-CCCCCCCCC--hh---hHH Q lcl|Aclame:pro 32 LPNVGYQRVEFGEMLPKWRKIMDCLS-----------GQEA----------IKAKREEYL-PMPSVDSRD--EE---QRR 84 (535) Q Consensus 32 M~~v~~~hp~y~~~~~~w~~i~d~~~-----------G~~~----------~~~~g~~YL-P~~~~~~~~--~E---~~~ 84 (535) |+| ...+.++-+|+-. |-.+ ++.-.++-+ .+-+....+ +. +.. T Consensus 1 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 70 (563) T protein:vir:99 1 MAD----------LFKQFRLGKDYGNNSTIAQVPIDEGLQANIKKIEQDNKEYQDLTKSLYGQQQAYAEPFIEMMDTNPE 70 (563) T ss_pred Chh----------hhhhhhcccccccccccceeeccCChhhhHhhhhccchhHHHHHhhhccCCCcchhhhHhhhccccc Confidence 222 2222222111100 0000 000000000 000000000 00 000 Q ss_pred HH------------HHHHhhhccchhHHHHHHHHhhhhh--ccccc--------------ccc-C--------HHHHHHH Q lcl|Aclame:pro 85 RY------------ETYLQRAIFYNVTARTLDGMMGQVF--SRDPI--------------RQL-P--------PALEAIV 127 (535) Q Consensus 85 ~Y------------~~rl~rA~~~n~~~~tv~~l~G~lF--~k~p~--------------~~~-p--------~~l~~l~ 127 (535) .| ...+...--.++.+.+++.++..+- ..+.. .+. + ..++.++ T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l 150 (563) T protein:vir:99 71 FRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFI 150 (563) T ss_pred ccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHh Confidence 00 1111111112344555554444332 11000 000 0 1123333 Q ss_pred hccCC----CCCCHHHHHHHHHHHHHhhCcEEEEEee--cCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCcc Q lcl|Aclame:pro 128 EDIDG----EGVSLDQQAKKALGYTMGFGRAAIFTDY--PNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKS 201 (535) Q Consensus 128 ~d~d~----~G~~L~~~~~~~~~~~l~~G~~~vlVD~--p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~ 201 (535) .++-- ...+..+|.+.+....+.+|.+++.+-. ...|.+ --+..++|..| T Consensus 151 ~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~------------~~L~pl~p~~V------------ 206 (563) T protein:vir:99 151 VNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKL------------EKFIAVDPSTI------------ 206 (563) T ss_pred hhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCce------------EEEEEeCCcee------------ Confidence 32211 1235778999999999999988886543 222221 13444444443 Q ss_pred ceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEecc--- Q lcl|Aclame:pro 202 VISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIGP--- 278 (535) Q Consensus 202 ~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~--- 278 (535) . +..++++.-.+....|+ + ...+.... ..+ -..| +.++.. T Consensus 207 -----~----v~~~~~g~~~~~~~~y~-----------~-----~~~g~~~~----~~~-------~~ev-I~~~~~~~~ 249 (563) T protein:vir:99 207 -----F----YATDKKGKIIKGGKRFV-----------Q-----VVDKRVVA----SFT-------SREL-AMGIRNPRT 249 (563) T ss_pred -----E----EEECCCCceeccceeEE-----------E-----EeCCceeE----Eec-------Ccce-EEEeccCCC Confidence 1 11111211001111111 0 00010000 000 0011 111211 Q ss_pred CCCcCCCCcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEee--CC---CCccchhccCc-ceeeecCcc----ccc Q lcl|Aclame:pro 279 LDNNADIDHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFT--GL---TKDWVEDVFKD-FKVHLGSRA----IIP 347 (535) Q Consensus 279 ~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~--G~---~~~~~~d~~~~-~~i~iG~~~----~~~ 347 (535) .......|.|||.-++ ..+.......++...+ ...+.|..+++ |. +++......+. ....-|... .+. T Consensus 250 d~~~~~~G~Spi~~a~-~~i~~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~v 328 (563) T protein:vir:99 250 ELSSSGYGLSEVEIAM-KEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVV 328 (563) T ss_pred CcccCcccchHHHHHH-HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEE Confidence 1122456889986554 3444444444444443 34567876654 32 11111100000 001123222 345 Q ss_pred CCCCCccceeecCcchhH-HHHHHHHHHHHHH---Hhhhhhccc-ccc-------cchHHHHHH---HHHHHHHHHHHHH Q lcl|Aclame:pro 348 LPQGATAGILQITPNSVP-FEAMTHKESQMIA---MGANLLVKS-GGN-------RTFGEAQQE---EASEQSILSACTK 412 (535) Q Consensus 348 lp~~~~~~~~e~~~~~l~-~~~l~~~e~qm~~---lga~~l~~~-~~~-------~ta~~a~~~---~~~~~S~L~~~a~ 412 (535) ++++.++.-+..++.... .+..+....++++ +...++... .+. .+-+.+.++ .+-....|.-+.. T Consensus 329 l~~G~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~ 408 (563) T protein:vir:99 329 MADDIKFVNMTPTANDMQFEKWLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLR 408 (563) T ss_pred cCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHH Confidence 677766665555554433 2333333444433 233333211 110 111122222 2233556777777 Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC--CccCCH Q lcl|Aclame:pro 413 NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLT-PNERAELILEWQQGAITFKEMRAGLRRAGVA--SEDDAK 489 (535) Q Consensus 413 ~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d-~~~~~al~~l~~~G~is~et~~~~L~r~gvl--~~~~~~ 489 (535) .++++++..| +..+ +....+. |.-.+.. ..+..++.+++.+|.++.-++++.+ |+- +..+.. T Consensus 409 ~ie~~ln~~L--~~~~------~~~~~~~----f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~---gl~Pi~gGD~~ 473 (563) T protein:vir:99 409 FIEDLVNRHI--ISEY------GDKYTFQ----FVGGDTKSATDKLNILKLETQIFKTVNEAREEQ---GKKPIEGGDII 473 (563) T ss_pred HHHHHHHhhh--chhc------ccccEEE----eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHh---CCCCCCCccee Confidence 7777776533 1121 1122333 3322221 1223345567889999988887654 321 111110 Q ss_pred --------------------HHHHHHHHhchhhcccCCCcCCCCCCCcccccccccccCCCCCCCC Q lcl|Aclame:pro 490 --------------------AETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) Q Consensus 490 --------------------eee~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (535) +..+.++..-......+.+.+.+.....++....+.|--+++.+-| T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (563) T protein:vir:99 474 LDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDNDDSEEGQSTDSSNDDKEIGTDAQIKGDD 539 (563) T ss_pred ecccccccccccccccCCCccccchhhhhcccccCCCCCCCCCCCCCCCCCCcccccccccccccc Confidence 0011111100000000111111111111111111111112221111 No 228 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=27.38 E-value=1.8 Score=19.12 Aligned_cols=431 Identities=11% Similarity=0.081 Sum_probs=145.9 Q ss_pred CCcch-------------hhhhhhhhcceecCCCCCCCCcccccCCCCCccCHHHHHHHHHHHHHHHHhcChHHHHHHHh Q lcl|Aclame:pro 1 MARKR-------------TTIRRDVQSKVLIPPQAPPTSGLGPSLPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKRE 67 (535) Q Consensus 1 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~M~~v~~~hp~y~~~~~~w~~i~d~~~G~~~~~~~g~ 67 (535) |-.|- .+|..-+-++- +.-+-|.+|.-.+.+-... .|.+.-- ..+..+-.++++..-+.+. T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~~~~~iv~~~-- 100 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSMESIEKGMNGKT--TAYMQPIIGEMSVNPGYKT-KPSIRNS-QDLHKTLKKFGNNIILNAI-- 100 (574) T ss_pred cccchhhhhhhhccCCCHHHHHHhHhhhc--ccccchhhhhccccccccC-cCccCCc-ccHHHHHHhhccChhHHHH-- Confidence 22211 11222222211 2223333333333221110 1111100 0111111222222111111 Q ss_pred hhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---cccccc-------cCHHHHHHHhccCCC---- Q lcl|Aclame:pro 68 EYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDPIRQ-------LPPALEAIVEDIDGE---- 133 (535) Q Consensus 68 ~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p~~~-------~p~~l~~l~~d~d~~---- 133 (535) -..|.. +++ -+++.+.....++.|. +..... .-..+..|+.+.-.. T Consensus 101 ------------------i~~~~~-~V~-~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~ 160 (574) T protein:vir:80 101 ------------------INTRSN-QVS-MYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPN 160 (574) T ss_pred ------------------HHHHHH-HHH-HHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCc Confidence 111111 111 2233333344444442 222111 112355666553221 Q ss_pred CCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEe Q lcl|Aclame:pro 134 GVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVL 213 (535) Q Consensus 134 G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~ 213 (535) -.+..+|.+.+....+.+|-+|+.+-+...|.+. -+..++|..| ++ . T Consensus 161 ~~s~~ef~~~lv~~lll~Gnayi~i~r~~~G~~~------------~L~pl~p~~V-----------------~v----~ 207 (574) T protein:vir:80 161 RDNFTTFCKKLVRATYMYDQVNFEKVFDKDGNFI------------KFDTVDPTTI-----------------FL----A 207 (574) T ss_pred cccHHHHHHHHHHHHHhcCCeEEEEEECCCCcEE------------EEEEEcCcee-----------------EE----E Confidence 1367899999999999999999988766554321 2344444443 11 1 Q ss_pred ecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEec-cCCCcCCCCcchHHH Q lcl|Aclame:pro 214 AQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFIG-PLDNNADIDHPPLLD 292 (535) Q Consensus 214 ~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~-~~~~~~~~~~ppL~d 292 (535) .+.+++-...-.+|+. +. .+.... ... +=..|=|.... ........|.|||.- T Consensus 208 ~d~~~~~~~~~~~y~~------------~~----~g~~~~------~~~----~~eiih~~~~~~~~~~~~~~G~spi~~ 261 (574) T protein:vir:80 208 TNGEGKLIKNGERFVQ------------VI----DNRIVA------KFN----ERELAFAVRNPRADIEVGQYGYPELEI 261 (574) T ss_pred EcCccccccCceEEEE------------Ee----CCceEE------EEc----cccEEEEeccCCCCcccccccccHHHH Confidence 1111110000011110 00 000000 000 00112111111 111223457888864 Q ss_pred HHHHHHHHHhhHHHHHHHH-HHhcCceeEee--CC---CCccchhccCc-ceeeecCcc----cccCCCCCccceeecCc Q lcl|Aclame:pro 293 LCEVNIGHYRNSADYEEMA-FVAGQPTAFFT--GL---TKDWVEDVFKD-FKVHLGSRA----IIPLPQGATAGILQITP 361 (535) Q Consensus 293 LA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~--G~---~~~~~~d~~~~-~~i~iG~~~----~~~lp~~~~~~~~e~~~ 361 (535) ++ ..+.......++...+ ...++|-.++. +. +++........ ....-|... ++.++++.+ |.++.. T Consensus 262 a~-~~i~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~--~~~l~~ 338 (574) T protein:vir:80 262 AL-KQFIAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVK--FVNMTP 338 (574) T ss_pred HH-HHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCce--EEEccC Confidence 44 4444444444444333 34567875554 32 21111100000 011122211 233444444 444443 Q ss_pred chhHHHHHHH---HHHHHHH---Hhhhhhcccc-------cccchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 362 NSVPFEAMTH---KESQMIA---MGANLLVKSG-------GNRTFGEAQQE---EASEQSILSACTKNVSMAFRKALRWA 425 (535) Q Consensus 362 ~~l~~~~l~~---~e~qm~~---lga~~l~~~~-------~~~ta~~a~~~---~~~~~S~L~~~a~~~~~a~~~~lr~~ 425 (535) .....+.++. ...+++. +...++.... +..+.+.+..+ ..-....|.-++..+++++++.| + T Consensus 339 s~~D~qfle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~L--l 416 (574) T protein:vir:80 339 SANDMQFEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYI--V 416 (574) T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--h Confidence 3222333333 3333332 2333332111 11111112222 22335567777888888887654 2 Q ss_pred HHHcCCCCCCceeEEEEecccCCccCC-HHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccCCHHHHHHHHHhchhhcc Q lcl|Aclame:pro 426 NQFQTGIVNDETVEYNLNTDFPAARLT-PNERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAETEGKATVEFIAKT 504 (535) Q Consensus 426 a~~~g~~~~~~~~~v~~n~df~~~~~d-~~~~~al~~l~~~G~is~et~~~~L~r~gvl~~~~~~eee~~~i~~e~~~~~ 504 (535) ..+ +..+.|.++. ..+. ..+...+..++.+|.++.-.+++.+-. .-++..+..- .-......+.+ T Consensus 417 ~~~------~~~~~~~f~~----~d~~~~~~~~~~~~~~~~G~lT~NE~R~~lgl-~Pi~gGD~~~---~~~n~~~~~~~ 482 (574) T protein:vir:80 417 AEF------GEKYQFQFRG----GDLSAQLDKLKIIEQEGKVFRTVNEIRHDKGL-EPIKGGDVIL---NGVHIQAIGQA 482 (574) T ss_pred hhc------CCceEEEecc----cchhhHHHHHHHHHHHhCCccCHHHHHHHhCC-CCCCCCCEee---eccceeecccc Confidence 111 1234454443 2222 223334456788899999888765421 1111111110 00000000000 Q ss_pred cCCCcCCCCCCCcccccccccccC--CC--------------C--------CCCC Q lcl|Aclame:pro 505 AAAGKVGDAASGGTNKAKLNNGNG--GG--------------N--------QAGN 535 (535) Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------~--------~~~~ 535 (535) .......+..+..+..+..+...+ .+ + ..|. T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~ 537 (574) T protein:vir:80 483 LQEEQLEYQRSQDRLNRLLELSGGDVEQPEPEEPKDSQNDTDVSFQDEQQGLNGK 537 (574) T ss_pred cccccCCccchhccccccccccCCCCCCCCCCCCCCccccccchhhhhhhhhccc Confidence 000000000000000000000000 00 0 0011 No 229 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=23.42 E-value=2.3 Score=18.59 Aligned_cols=378 Identities=13% Similarity=0.060 Sum_probs=131.4 Q ss_pred ccccCCCCCccCHHHHHH-HHHHHHHHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHH Q lcl|Aclame:pro 28 LGPSLPNVGYQRVEFGEM-LPKWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGM 106 (535) Q Consensus 28 ~~~~M~~v~~~hp~y~~~-~~~w~~i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l 106 (535) .|++-. .......-... .+.|. .-...|. ....+. -.|...++. +++..+|+.+ T Consensus 1 Mg~f~~-~~~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~-----------~~~~~~~~~----~~v~~~i~~i 55 (406) T protein:vir:95 1 MGLFDR-WRRTKRKSKIRADTGYV--GLFMSGE-------DVSFLV-----------PGYVRLSDN----PEVRMAVHKI 55 (406) T ss_pred Ccchhh-hccccccccccccchhh--hhhccCc-------ccCccc-----------cCHHHHhhc----HHHHHHHHHH Confidence 333311 10000000000 00000 0000000 000000 012333333 3344455544 Q ss_pred hhhhhcccccc---------ccCHHHHH-HHhccCCCCCCHHHHHHHHHHHHHhhCcE--EEEEeecCCCcccchHHHHh Q lcl|Aclame:pro 107 MGQVFSRDPIR---------QLPPALEA-IVEDIDGEGVSLDQQAKKALGYTMGFGRA--AIFTDYPNVGRPVTVLEQKL 174 (535) Q Consensus 107 ~G~lF~k~p~~---------~~p~~l~~-l~~d~d~~G~~L~~~~~~~~~~~l~~G~~--~vlVD~p~~~~~~t~ad~~~ 174 (535) +..+.+-+..+ .....+.. |..... ...+-.+|.+.+....+.+|.+ ++++.....+.+. T Consensus 56 a~~ia~~~~~~~~~~~~~~~~~~~~~~~~l~~~PN-~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~------- 127 (406) T protein:vir:95 56 ADLISSMTIYLMQNTEDGDIRIRNELSRKIDITPY-SLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLID------- 127 (406) T ss_pred HHhhccCceEEEEecCCcceeecchHHHHHhhccC-CCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEE------- Confidence 44443322221 12222333 333332 4578899999999999998765 4455544333211 Q ss_pred ccCCcEEEEechhhhhcceeeecCCccceeEEEEEEEEeecCCCcccceeeEEEEEeecCCceEEEEEEeeeccCCcccc Q lcl|Aclame:pro 175 GLYRPTITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYS 254 (535) Q Consensus 175 ~~~rPy~~~~~~~~Ii~w~~~~~~g~~~Lt~v~l~E~~~~~~d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~ 254 (535) -+..++|..| .+ ....++ |++.. .+. T Consensus 128 -----~l~~i~~~~v-----------------~~----~~~~~~-------------------~~~~~-----~~~---- 153 (406) T protein:vir:95 128 -----ELVPLTPSKV-----------------NF----LDTPDG-------------------YQVLY-----GGQ---- 153 (406) T ss_pred -----EEEEEcCcee-----------------EE----EEcCCe-------------------EEEEe-----ccE---- Confidence 2333444333 11 111111 11110 000 Q ss_pred ccceeeeccCCCccceeEEEEeccCCCcCCCCcchHHHHHHHHHHHHhhHHHHHHH-HHHhcCceeEeeC---CCCccch Q lcl|Aclame:pro 255 YSKHVPTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSADYEEM-AFVAGQPTAFFTG---LTKDWVE 330 (535) Q Consensus 255 ~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ppL~dLA~ln~~hy~~~sdl~~~-l~~~~~P~~~~~G---~~~~~~~ 330 (535) ..+. -.+|=|. .+....+...|.+|+.-+.. .+........+... ....+.|..+++- ++++... T Consensus 154 ---~~~~------~evih~~-~~~~~~~~~~G~s~i~~~~~-~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~ 222 (406) T protein:vir:95 154 ---TFNY------DEVLHFI-YNPDPERPYIGRGYRVVLKD-IADNLKQATATKKSFMSGKYMPSLIVKVDAATAELSSE 222 (406) T ss_pred ---EEch------hHEEEee-ccCCCCCCccccCHHHHHHH-HHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHH Confidence 0000 0111111 11122233457788755543 33333333333333 3445677666653 2222111 Q ss_pred hccCc-ceeeecC---cccccCCCCC-ccce-eecCcchhH-HHHHHHHHHHHHH---HhhhhhcccccccchHHHHHHH Q lcl|Aclame:pro 331 DVFKD-FKVHLGS---RAIIPLPQGA-TAGI-LQITPNSVP-FEAMTHKESQMIA---MGANLLVKSGGNRTFGEAQQEE 400 (535) Q Consensus 331 d~~~~-~~i~iG~---~~~~~lp~~~-~~~~-~e~~~~~l~-~~~l~~~e~qm~~---lga~~l~~~~~~~ta~~a~~~~ 400 (535) ...+. ....-|. ...+.++.++ ...- ...++.... .+..+....+++. +...++.... .++... . T Consensus 223 ~~~~~~~~~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~----~~~~~~-~ 297 (406) T protein:vir:95 223 EGRNAVFKKYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIGE----FNRDEY-N 297 (406) T ss_pred HHHHHHHHHhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCC----chHHHH-H Confidence 11110 0011122 2233344332 2221 122222221 1222333333332 2333342111 111111 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhC Q lcl|Aclame:pro 401 ASEQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRA 480 (535) Q Consensus 401 ~~~~S~L~~~a~~~~~a~~~~lr~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~ 480 (535) .--+..|.-++..++++++..| +. .....|+++.+-.........+..+.+++++|.++...+++.+ T Consensus 298 ~~~~~~l~P~~~~ie~~l~~~l------~~----~~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~--- 364 (406) T protein:vir:95 298 NFINSTILPIAKGIEQELTRKL------LI----SPDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWL--- 364 (406) T ss_pred HHHHHHHHHHHHHHHHHHHHhc------CC----CCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHh--- Confidence 1223445566666666554333 11 1223455444333222234466777889999999988777644 Q ss_pred CCCCccCCHHHHHHHHHhchhhcccCCCcCCCC-CCCcccccccccccCCCCC Q lcl|Aclame:pro 481 GVASEDDAKAETEGKATVEFIAKTAAAGKVGDA-ASGGTNKAKLNNGNGGGNQ 532 (535) Q Consensus 481 gvl~~~~~~eee~~~i~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 532 (535) |+- +... -+++-. ..+..+-+. +...+.+.-.+++.+|+.. T Consensus 365 gl~-p~~~----gd~~~~------~~n~~~~~~~~~~~~~k~g~~~~~~~~~~ 406 (406) T protein:vir:95 365 GLS-PKEG----LSELVI------LENYIPLDKIGDQSKLKGGDNSGADGQTD 406 (406) T ss_pred CCC-CCCC----cceeee------ccCccchhhcccccccCCCCCCCCCCCCC Confidence 432 2111 111100 011111110 0001111112233333333 No 230 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=21.54 E-value=2.6 Score=18.32 Aligned_cols=395 Identities=12% Similarity=0.076 Sum_probs=138.0 Q ss_pred HHHHhcChHHHHHHHhhhCCCCCCCCCChhhHHHHHHHHhhhccchhHHHHHHHHhhhhhc---cccccccCHHHHHHHh Q lcl|Aclame:pro 52 IMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQVFS---RDPIRQLPPALEAIVE 128 (535) Q Consensus 52 i~d~~~G~~~~~~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tv~~l~G~lF~---k~p~~~~p~~l~~l~~ 128 (535) |.-+-.|...+ +.+.......-+.+. ++.-+..+-.+..+-+.++++.|. +.-.......+..++. T Consensus 1 ~~~~~~~~g~~--------~~~~~~~~~~~~~~~---~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL~ 69 (723) T protein:vir:94 1 MTTFPSGAGGW--------NAWSADSVFGNGAKG---WSNSAVAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLWN 69 (723) T ss_pred CcccccCCCcc--------ccccccccccccHHH---HhhhHHHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHHh Confidence 22222221111 111111111111222 222222222333344444444442 1111111122444554 Q ss_pred ccCCCCCCHHHHHHHHHHHHHhhCcEEEEEeecCCCcccchHHHHhccCCc-EEEEechhhhhcceeeecCCccceeEEE Q lcl|Aclame:pro 129 DIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP-TITLVHPTSIINWRTKLVGGKSVISLVV 207 (535) Q Consensus 129 d~d~~G~~L~~~~~~~~~~~l~~G~~~vlVD~p~~~~~~t~ad~~~~~~rP-y~~~~~~~~Ii~w~~~~~~g~~~Lt~v~ 207 (535) .-=....+-.+|.+.+....+.+|.+|+++....... ..+| -+..+.+.. +.+ T Consensus 70 ~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~----------~g~p~~l~~l~~~~---------------~~v- 123 (723) T protein:vir:94 70 VMPNRAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTP----------AGVPDEIWYVYDRV---------------TTI- 123 (723) T ss_pred hCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcc----------ccceeEEEEecCcc---------------eEE- Confidence 3233567889999999999999999999998653211 0122 112222211 100 Q ss_pred EEEEEeecC-CCcccceeeEEEEEeecCCceEEEEEEeeeccCCccccccceeeeccCCCccceeEEEEe-ccCCCcCCC Q lcl|Aclame:pro 208 IQENVLAQD-DGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNGNPFKEIPFQFI-GPLDNNADI 285 (535) Q Consensus 208 l~E~~~~~~-d~f~~~~~~~~rvl~l~~~g~y~v~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~-~~~~~~~~~ 285 (535) ....+ +.+....... |+++. . +..... .+. . . ++.+ +....+... T Consensus 124 ----~~~~~~~~~~~~~~~~-----------y~~~~--~---~G~~~~----~~~----~--d---IiHir~~~~~dg~~ 170 (723) T protein:vir:94 124 ----VATRAADAVPQAQIIG-----------YVIER--T---DGVRVP----VLA----D--E---MLWLRFSDPYDPLA 170 (723) T ss_pred ----eecCCCccceeeeeeE-----------EEEEe--c---CceeEE----ecc----c--c---eEEecCCCCCCCcc Confidence 00111 1110000111 11110 0 000000 000 0 0 1222 112234456 Q ss_pred CcchHHHHHHHHHHHHhhHHHHHHHH-HHhcCceeEeeC--CCCccchhccCc-ceeeecCc---ccccC---------- Q lcl|Aclame:pro 286 DHPPLLDLCEVNIGHYRNSADYEEMA-FVAGQPTAFFTG--LTKDWVEDVFKD-FKVHLGSR---AIIPL---------- 348 (535) Q Consensus 286 ~~ppL~dLA~ln~~hy~~~sdl~~~l-~~~~~P~~~~~G--~~~~~~~d~~~~-~~i~iG~~---~~~~l---------- 348 (535) |.+|+.-++ ..+.......++.... ...++|-.+++- ++++........ ....-|.. ..+.+ T Consensus 171 G~Spi~~a~-~~i~~~~aa~~~~~~~f~NG~~p~giL~~~~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL~g~~~~~~vl 249 (723) T protein:vir:94 171 VMAPWKAAR-AAVDADFYAATWQRQSFKNGARPGGVVNLGDMDEQTFTKTVAAFRSQVEGVQNAGRHLLIAGQGSDGGAA 249 (723) T ss_pred cccHHHHHH-HHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCCHHHHHHHHHHHHHHhhchhhcCcceeecccccccccc Confidence 888886544 3334333444444333 345678777763 111111000000 00001211 11222 Q ss_pred CCCCccceeecCcchhHHHHHHHHHHH---HHH---HhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 349 PQGATAGILQITPNSVPFEAMTHKESQ---MIA---MGANLLVKSGGNRTFGEAQQEEASEQSILSACTKNVSMAFRKAL 422 (535) Q Consensus 349 p~~~~~~~~e~~~~~l~~~~l~~~e~q---m~~---lga~~l~~~~~~~ta~~a~~~~~~~~S~L~~~a~~~~~a~~~~l 422 (535) ++|.++..+..++.. .+.++.+... ++. +...++..++......+.. ..--...|.-+...++++++.-| T Consensus 250 ~~G~~~~~l~~s~~D--~q~le~r~~~~~eIa~afgVPp~~i~~~st~sN~e~~~--~~f~~~tL~P~~~~ie~~ln~~L 325 (723) T protein:vir:94 250 GKGATFTSLSMSPAE--MDYINSRMHSAEEVMLAFGIRKDALLGGSTYENQAEAK--AAVWTETLIPQMEVMASITDLQL 325 (723) T ss_pred cCCceEEEccCCHHH--HHHHHHHHHhHHHHHHHhCCChhHcCCCCCcccHHHHH--HHHHHHHHHHHHHHHHHHHhHhh Confidence 233344434433332 2333333322 222 2233332211111111111 11223446666666666665533 Q ss_pred HHHHHHcCCCCCCceeEEEEecccCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCC--CccCCHHHHHHHHHhch Q lcl|Aclame:pro 423 RWANQFQTGIVNDETVEYNLNTDFPAARLTPNERAELILEWQQGAITFKEMRAGLRRAGVA--SEDDAKAETEGKATVEF 500 (535) Q Consensus 423 r~~a~~~g~~~~~~~~~v~~n~df~~~~~d~~~~~al~~l~~~G~is~et~~~~L~r~gvl--~~~~~~eee~~~i~~e~ 500 (535) +..+ +..+.|.++..-..........+++-.++++|.++.-.+++.+ |+- +..+... ...-...+. T Consensus 326 --l~~~------g~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~l---glpPi~gGd~~~-~~~p~~~~~ 393 (723) T protein:vir:94 326 --LPDI------GWTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATI---GLDPLPGGIGQM-TLTPYRAQF 393 (723) T ss_pred --cccc------cCceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCCcccc-eeccccccc Confidence 1111 1223344433211112123456777789999999998887654 322 2222100 000000111 Q ss_pred hhcccCCCcCCCCCCCccccccc--------ccc--cCCCCCCCC Q lcl|Aclame:pro 501 IAKTAAAGKVGDAASGGTNKAKL--------NNG--NGGGNQAGN 535 (535) Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~ 535 (535) . +...+.+....+....-+.. ..+ ..+.+..++ T Consensus 394 a--~~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 436 (723) T protein:vir:94 394 A--PAPAPAPAVEEGAARMLALLERVAADRPLPELPVRATTVLHH 436 (723) T ss_pred c--CCCCCCccchhhhHhhhhhccccccccCcCCCCCCCCCCCCC Confidence 1 11111111111110000100 111 112222222 Done!