Query lcl|Aclame:protein:vir:80333|NCBI_annot:gp4, phage portal protein, HK97 family|genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Match_columns 419 No_of_seqs 119 out of 1140 Neff 9.8 Searched_HMMs 1612 Date Mon Dec 2 21:09:14 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_23 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_23_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:1431 Length: 419 # 100.0 4E-110 3E-113 620.1 43.6 419 1-419 1-419 (419) 2 protein:vir:80333 Length: 419 100.0 8E-110 5E-113 618.8 42.8 419 1-419 1-419 (419) 3 protein:vir:105064 Length: 421 100.0 2E-102 1E-105 578.0 43.3 414 1-419 1-419 (421) 4 protein:vir:5737 Length: 419 # 100.0 2E-100 1E-103 567.3 41.7 414 1-419 1-416 (419) 5 protein:vir:483 Length: 413 # 100.0 1.6E-99 1E-102 562.3 42.9 409 1-416 1-413 (413) 6 protein:vir:4454 Length: 414 # 100.0 5.3E-99 3E-102 559.3 42.7 409 1-416 1-414 (414) 7 protein:vir:4509 Length: 424 # 100.0 1.1E-97 7E-101 552.2 42.2 402 1-413 17-424 (424) 8 protein:vir:1266 Length: 416 # 100.0 1.2E-97 7E-101 552.0 42.3 406 1-414 1-416 (416) 9 protein:vir:102118 Length: 409 100.0 7.2E-97 4E-100 547.7 41.9 398 1-407 1-409 (409) 10 protein:vir:102080 Length: 429 100.0 1.2E-96 7E-100 546.5 42.2 409 1-415 1-429 (429) 11 protein:vir:100249 Length: 431 100.0 1.2E-96 8E-100 546.4 41.8 396 1-403 1-431 (431) 12 protein:vir:10362 Length: 432 100.0 1.3E-96 8E-100 546.2 40.4 408 1-419 7-431 (432) 13 protein:vir:93610 Length: 454 100.0 2.8E-96 1.7E-99 544.5 42.1 410 1-419 1-437 (454) 14 protein:vir:81072 Length: 432 100.0 1.8E-96 1.1E-99 545.5 40.6 408 1-419 7-431 (432) 15 protein:vir:97060 Length: 432 100.0 1.7E-96 1.1E-99 545.6 40.4 408 1-419 7-431 (432) 16 protein:vir:107605 Length: 432 100.0 3.6E-96 2.3E-99 543.8 42.0 409 1-415 1-432 (432) 17 protein:vir:102855 Length: 432 100.0 3.6E-96 2.3E-99 543.8 42.0 409 1-415 1-432 (432) 18 protein:vir:105002 Length: 432 100.0 3.6E-96 2.3E-99 543.8 42.0 409 1-415 1-432 (432) 19 protein:vir:81152 Length: 411 100.0 3E-96 1.9E-99 544.3 40.8 395 1-407 1-411 (411) 20 protein:vir:189 Length: 424 # 100.0 1.2E-95 7.3E-99 541.0 41.3 402 1-409 14-424 (424) 21 protein:vir:4337 Length: 434 # 100.0 1.5E-95 9.5E-99 540.4 41.9 410 1-416 1-434 (434) 22 protein:vir:1884 Length: 424 # 100.0 1.2E-95 7.3E-99 541.0 40.9 402 1-409 14-424 (424) 23 protein:vir:100150 Length: 437 100.0 3E-95 1.8E-98 538.8 42.3 410 1-415 1-437 (437) 24 protein:vir:1380 Length: 422 # 100.0 2.4E-94 1.5E-97 533.8 41.6 398 1-416 1-422 (422) 25 protein:vir:1326 Length: 457 # 100.0 5.9E-93 3.7E-96 526.2 41.8 413 1-419 1-451 (457) 26 protein:vir:6240 Length: 457 # 100.0 4.6E-93 2.9E-96 526.8 40.7 413 1-419 1-448 (457) 27 protein:vir:98396 Length: 441 100.0 8.8E-93 5.5E-96 525.3 41.8 402 1-415 23-441 (441) 28 protein:vir:9408 Length: 441 # 100.0 2.4E-92 1.5E-95 522.9 42.1 401 1-415 26-441 (441) 29 protein:vir:79984 Length: 441 100.0 2.4E-92 1.5E-95 522.9 42.1 401 1-415 26-441 (441) 30 protein:vir:4598 Length: 416 # 100.0 5.2E-92 3.2E-95 521.0 41.8 402 1-415 1-416 (416) 31 protein:vir:81095 Length: 416 100.0 5.2E-92 3.2E-95 521.0 41.8 402 1-415 1-416 (416) 32 protein:vir:7853 Length: 518 # 100.0 2.5E-91 1.6E-94 517.3 42.3 409 1-419 1-434 (518) 33 protein:vir:8418 Length: 409 # 100.0 1.3E-91 8.3E-95 518.8 40.7 400 1-416 1-409 (409) 34 protein:vir:101648 Length: 518 100.0 9.4E-91 5.8E-94 514.1 42.2 409 1-419 1-442 (518) 35 protein:vir:81218 Length: 423 100.0 5.7E-90 3.5E-93 509.8 40.5 404 1-407 1-423 (423) 36 protein:vir:2683 Length: 412 # 100.0 5E-90 3.1E-93 510.2 39.9 398 1-414 1-412 (412) 37 protein:vir:9702 Length: 406 # 100.0 2.6E-89 1.6E-92 506.2 41.1 393 1-414 1-406 (406) 38 protein:vir:3868 Length: 417 # 100.0 2.5E-89 1.6E-92 506.3 40.2 397 1-417 1-417 (417) 39 protein:vir:93943 Length: 409 100.0 7E-89 4.3E-92 503.9 39.5 397 1-414 1-409 (409) 40 protein:vir:96980 Length: 409 100.0 1.2E-88 7.4E-92 502.6 39.5 397 1-414 4-409 (409) 41 protein:vir:94426 Length: 409 100.0 3.4E-88 2.1E-91 500.1 39.6 397 1-414 1-409 (409) 42 protein:vir:95378 Length: 406 100.0 6.9E-88 4.3E-91 498.4 41.3 400 1-415 1-406 (406) 43 protein:vir:101647 Length: 460 100.0 3E-87 1.9E-90 494.9 40.4 400 1-415 1-460 (460) 44 protein:vir:80134 Length: 403 100.0 3.5E-86 2.2E-89 489.1 40.3 396 1-415 1-403 (403) 45 protein:vir:960 Length: 413 # 100.0 4.2E-86 2.6E-89 488.7 38.5 384 1-407 13-413 (413) 46 protein:vir:8100 Length: 466 # 100.0 1.4E-84 8.5E-88 480.4 40.2 405 1-416 1-466 (466) 47 protein:vir:6210 Length: 394 # 100.0 1E-84 6.5E-88 481.0 37.8 390 1-414 1-394 (394) 48 protein:vir:8317 Length: 409 # 100.0 4.4E-84 2.7E-87 477.6 38.0 370 1-390 1-409 (409) 49 protein:vir:102727 Length: 945 100.0 1.4E-83 8.7E-87 474.8 40.1 415 1-419 63-534 (945) 50 protein:vir:94666 Length: 723 100.0 4.5E-84 2.8E-87 477.5 37.1 383 12-419 1-412 (723) 51 protein:vir:104259 Length: 403 100.0 2.2E-82 1.4E-85 468.2 38.9 389 1-415 1-403 (403) 52 protein:vir:3843 Length: 397 # 100.0 4.4E-81 2.7E-84 461.1 40.4 384 1-413 1-397 (397) 53 protein:vir:9359 Length: 348 # 100.0 2.2E-80 1.4E-83 457.3 36.9 340 59-414 1-348 (348) 54 protein:vir:80796 Length: 574 100.0 3.1E-78 1.9E-81 445.5 38.6 413 1-419 27-505 (574) 55 protein:vir:95965 Length: 385 100.0 2.9E-78 1.8E-81 445.7 35.3 374 1-410 1-385 (385) 56 protein:vir:94002 Length: 378 100.0 2.7E-78 1.7E-81 445.9 34.4 365 1-415 1-378 (378) 57 protein:vir:93867 Length: 378 100.0 2.8E-78 1.7E-81 445.8 34.1 365 1-415 1-378 (378) 58 protein:vir:100187 Length: 385 100.0 2.9E-77 1.8E-80 440.2 38.8 369 1-399 1-385 (385) 59 protein:vir:1661 Length: 378 # 100.0 5.5E-78 3.4E-81 444.1 34.3 365 1-415 1-378 (378) 60 protein:vir:4854 Length: 386 # 100.0 8.1E-77 5E-80 437.7 38.5 374 1-413 1-386 (386) 61 protein:vir:100882 Length: 383 100.0 1.2E-76 7.3E-80 436.9 38.5 369 1-413 1-383 (383) 62 protein:vir:7407 Length: 392 # 100.0 2.1E-76 1.3E-79 435.5 38.2 372 1-406 3-392 (392) 63 protein:vir:80644 Length: 551 100.0 2.7E-76 1.7E-79 434.9 38.4 410 1-419 39-530 (551) 64 protein:vir:100691 Length: 535 100.0 5.1E-76 3.2E-79 433.3 38.6 409 1-419 57-519 (535) 65 protein:vir:100650 Length: 395 100.0 1E-76 6.2E-80 437.2 34.4 380 1-416 1-395 (395) 66 protein:vir:9507 Length: 395 # 100.0 1E-76 6.2E-80 437.2 34.4 380 1-416 1-395 (395) 67 protein:vir:101289 Length: 395 100.0 1E-76 6.2E-80 437.2 34.4 380 1-416 1-395 (395) 68 protein:vir:1082 Length: 359 # 100.0 6E-76 3.7E-79 433.0 37.0 348 1-379 1-359 (359) 69 protein:vir:3989 Length: 392 # 100.0 1.4E-75 8.8E-79 430.9 37.4 372 1-406 3-392 (392) 70 protein:vir:1023 Length: 392 # 100.0 1.4E-75 8.8E-79 430.9 37.4 372 1-406 3-392 (392) 71 protein:vir:858 Length: 378 # 100.0 4E-76 2.5E-79 433.9 33.8 365 1-415 1-378 (378) 72 protein:vir:78310 Length: 376 100.0 7E-76 4.3E-79 432.6 35.0 366 1-400 1-376 (376) 73 protein:vir:96579 Length: 576 100.0 3.7E-75 2.3E-78 428.7 38.1 409 1-419 32-507 (576) 74 protein:vir:4089 Length: 395 # 100.0 1.7E-75 1E-78 430.5 33.6 383 1-416 1-395 (395) 75 protein:vir:94869 Length: 378 100.0 6.4E-75 4E-78 427.3 35.3 365 1-415 1-378 (378) 76 protein:vir:95599 Length: 563 100.0 4E-74 2.5E-77 423.0 38.4 409 1-419 42-537 (563) 77 protein:vir:99312 Length: 563 100.0 4E-74 2.5E-77 423.0 38.4 409 1-419 42-537 (563) 78 protein:vir:63755 Length: 547 100.0 2.1E-74 1.3E-77 424.5 36.4 412 1-419 31-512 (547) 79 protein:vir:9641 Length: 395 # 100.0 2E-74 1.2E-77 424.6 32.8 377 1-414 1-395 (395) 80 protein:vir:4995 Length: 384 # 100.0 1.5E-73 9.5E-77 419.8 36.3 363 1-385 1-384 (384) 81 protein:vir:4156 Length: 542 # 100.0 4.6E-73 2.9E-76 417.2 38.1 395 1-419 1-443 (542) 82 protein:vir:98643 Length: 395 100.0 1.6E-73 9.8E-77 419.7 34.1 379 1-414 1-395 (395) 83 protein:vir:3153 Length: 467 # 100.0 4.5E-73 2.8E-76 417.2 36.3 379 38-419 1-447 (467) 84 protein:vir:4952 Length: 386 # 100.0 1.6E-72 9.8E-76 414.2 38.8 375 1-414 1-386 (386) 85 protein:vir:4828 Length: 382 # 100.0 2.9E-72 1.8E-75 412.8 37.0 368 1-415 1-382 (382) 86 protein:vir:4194 Length: 540 # 100.0 1.4E-71 8.6E-75 409.1 37.2 392 1-419 1-441 (540) 87 protein:vir:99452 Length: 651 100.0 1.1E-67 7E-71 387.6 32.2 413 1-419 1-545 (651) 88 protein:vir:79772 Length: 648 100.0 2.2E-64 1.3E-67 369.6 37.0 405 1-419 8-511 (648) 89 protein:vir:78641 Length: 278 100.0 8.9E-60 5.5E-63 344.3 29.8 271 59-343 1-278 (278) 90 protein:vir:79150 Length: 368 100.0 9.1E-55 5.7E-58 316.8 26.6 336 1-359 1-368 (368) 91 protein:vir:267 Length: 348 # 100.0 9E-53 5.6E-56 305.9 30.0 328 1-351 1-348 (348) 92 protein:vir:103971 Length: 376 100.0 3.3E-52 2E-55 302.9 31.4 329 1-350 26-376 (376) 93 protein:vir:79207 Length: 351 100.0 2.7E-51 1.6E-54 297.9 30.2 325 1-350 1-351 (351) 94 protein:vir:78191 Length: 351 100.0 3.7E-51 2.3E-54 297.1 30.5 313 1-350 1-351 (351) 95 protein:vir:98567 Length: 340 100.0 8.9E-52 5.5E-55 300.5 27.0 319 1-347 1-340 (340) 96 protein:vir:100328 Length: 346 100.0 3.4E-51 2.1E-54 297.3 28.0 324 1-348 1-346 (346) 97 protein:vir:78749 Length: 337 100.0 1.5E-51 9.4E-55 299.2 24.4 321 1-344 1-337 (337) 98 protein:vir:4698 Length: 251 # 100.0 9.6E-51 6E-54 294.8 26.3 243 1-253 1-251 (251) 99 protein:vir:6058 Length: 344 # 100.0 7.8E-50 4.9E-53 289.8 27.4 322 1-348 1-344 (344) 100 protein:vir:1150 Length: 350 # 100.0 8.2E-50 5.1E-53 289.7 27.4 321 1-343 1-350 (350) 101 protein:vir:2013 Length: 344 # 100.0 1E-49 6.2E-53 289.2 27.0 322 1-348 1-344 (344) 102 protein:vir:3743 Length: 345 # 100.0 3E-49 1.9E-52 286.6 29.5 321 1-345 1-345 (345) 103 protein:vir:5691 Length: 344 # 100.0 1.3E-49 8E-53 288.6 26.6 322 1-348 1-344 (344) 104 protein:vir:3780 Length: 345 # 100.0 3.5E-49 2.1E-52 286.3 28.4 321 1-345 1-345 (345) 105 protein:vir:98853 Length: 219 100.0 1.1E-41 6.7E-45 245.2 20.2 205 136-347 1-219 (219) 106 protein:vir:5249 Length: 437 # 99.9 4.4E-26 2.7E-29 159.6 30.3 390 1-413 1-437 (437) 107 protein:vir:107742 Length: 537 99.9 2.3E-23 1.4E-26 144.7 29.3 399 1-419 48-531 (537) 108 protein:vir:94049 Length: 532 99.9 1.3E-22 7.8E-26 140.7 28.4 403 1-419 33-518 (532) 109 protein:vir:99563 Length: 862 99.9 2.4E-21 1.5E-24 133.6 29.4 397 1-419 66-575 (862) 110 protein:vir:104338 Length: 422 99.8 3.9E-20 2.4E-23 127.0 25.1 368 15-412 1-422 (422) 111 protein:vir:99232 Length: 526 99.8 5.8E-19 3.6E-22 120.6 31.4 401 1-419 1-454 (526) 112 protein:vir:107662 Length: 427 99.8 3.4E-20 2.1E-23 127.3 23.4 368 13-414 1-427 (427) 113 protein:vir:96068 Length: 765 99.8 3.3E-19 2E-22 121.9 28.4 397 1-419 43-548 (765) 114 protein:vir:99853 Length: 488 99.8 2.7E-19 1.7E-22 122.4 27.6 394 3-419 1-420 (488) 115 protein:vir:79647 Length: 435 99.8 6.1E-20 3.8E-23 125.9 23.7 375 1-413 1-435 (435) 116 protein:vir:79233 Length: 526 99.8 3.1E-18 1.9E-21 116.6 30.7 401 1-419 1-454 (526) 117 protein:vir:103860 Length: 528 99.8 5.5E-18 3.4E-21 115.2 31.6 403 1-419 1-456 (528) 118 protein:vir:108215 Length: 469 99.8 2.9E-17 1.8E-20 111.2 33.7 400 1-419 1-468 (469) 119 protein:vir:1986 Length: 512 # 99.8 1.2E-17 7.2E-21 113.4 31.2 400 1-419 1-445 (512) 120 protein:vir:80040 Length: 461 99.7 4.1E-18 2.5E-21 115.9 24.3 384 1-409 1-461 (461) 121 protein:vir:95254 Length: 488 99.7 3.2E-16 2E-19 105.5 30.9 402 1-416 1-488 (488) 122 protein:vir:79063 Length: 491 99.7 9.2E-16 5.7E-19 103.0 30.1 394 1-419 1-429 (491) 123 protein:vir:79511 Length: 448 99.7 8.4E-16 5.2E-19 103.2 28.9 397 1-419 1-444 (448) 124 protein:vir:79538 Length: 502 99.6 3.3E-16 2.1E-19 105.4 25.7 410 1-416 1-502 (502) 125 protein:vir:107880 Length: 491 99.6 8E-16 4.9E-19 103.4 27.4 393 1-419 1-429 (491) 126 protein:vir:96738 Length: 505 99.6 1.8E-16 1.1E-19 107.0 22.2 405 1-413 8-505 (505) 127 protein:vir:389 Length: 530 # 99.6 1.5E-15 9.1E-19 101.9 26.3 413 1-416 7-530 (530) 128 protein:vir:77981 Length: 448 99.6 4.3E-15 2.7E-18 99.4 28.7 395 1-419 1-442 (448) 129 protein:vir:95542 Length: 548 99.6 5.7E-15 3.5E-18 98.7 25.1 412 1-419 1-517 (548) 130 protein:vir:10321 Length: 495 99.6 5.9E-15 3.6E-18 98.6 25.0 408 1-416 1-495 (495) 131 protein:vir:3420 Length: 533 # 99.6 1E-14 6.2E-18 97.3 25.1 414 1-416 10-533 (533) 132 protein:vir:6382 Length: 553 # 99.5 2.8E-14 1.8E-17 94.9 25.3 410 1-416 1-553 (553) 133 protein:vir:98816 Length: 446 99.5 2.4E-13 1.5E-16 89.8 27.5 367 1-381 3-446 (446) 134 protein:vir:106716 Length: 698 99.5 4.6E-14 2.9E-17 93.7 23.5 405 1-419 46-552 (698) 135 protein:vir:101541 Length: 694 99.4 1.3E-13 8E-17 91.3 22.9 404 1-419 66-576 (694) 136 protein:vir:78589 Length: 695 99.4 2.2E-13 1.4E-16 89.9 24.2 405 1-419 46-577 (695) 137 protein:vir:3648 Length: 695 # 99.4 2.8E-13 1.8E-16 89.4 23.7 404 1-419 67-577 (695) 138 protein:vir:102426 Length: 631 99.4 8.2E-14 5.1E-17 92.3 19.4 416 1-419 1-535 (631) 139 protein:vir:105782 Length: 449 99.4 1.4E-13 8.5E-17 91.1 17.6 374 1-410 1-449 (449) 140 protein:vir:8654 Length: 629 # 99.3 1.4E-12 8.8E-16 85.5 19.7 413 1-419 1-528 (629) 141 protein:vir:99088 Length: 629 99.3 1.8E-12 1.1E-15 85.0 19.7 413 1-419 1-528 (629) 142 protein:vir:78161 Length: 355 99.3 3E-11 1.9E-14 78.3 26.2 300 114-419 1-341 (355) 143 protein:vir:106491 Length: 646 99.3 2.1E-12 1.3E-15 84.6 19.3 409 1-419 1-507 (646) 144 protein:vir:97900 Length: 639 99.2 4.1E-12 2.6E-15 83.0 19.7 415 1-419 1-535 (639) 145 protein:vir:107517 Length: 639 99.2 4.1E-12 2.6E-15 83.0 19.7 415 1-419 1-535 (639) 146 protein:vir:106027 Length: 629 99.2 2.2E-11 1.4E-14 79.0 20.6 415 1-419 1-522 (629) 147 protein:vir:105889 Length: 474 98.8 3.3E-08 2.1E-11 61.6 24.2 384 1-413 1-474 (474) 148 protein:vir:94101 Length: 474 98.8 3.3E-08 2.1E-11 61.6 24.2 384 1-413 1-474 (474) 149 protein:vir:5839 Length: 533 # 98.7 9.7E-08 6E-11 59.0 23.7 405 1-419 4-508 (533) 150 protein:vir:102602 Length: 456 98.6 8.8E-08 5.4E-11 59.3 21.9 385 1-416 7-456 (456) 151 protein:vir:105819 Length: 456 98.6 8.8E-08 5.4E-11 59.3 21.9 385 1-416 7-456 (456) 152 protein:vir:38 Length: 496 # N 98.5 2.6E-07 1.6E-10 56.7 21.2 383 1-414 16-496 (496) 153 protein:vir:7987 Length: 456 # 98.5 2.9E-08 1.8E-11 61.9 15.8 382 1-416 7-456 (456) 154 protein:vir:103219 Length: 201 98.5 6.8E-09 4.2E-12 65.4 12.0 185 208-413 1-201 (201) 155 protein:vir:8184 Length: 474 # 98.4 6.6E-07 4.1E-10 54.5 22.7 389 1-408 1-474 (474) 156 protein:vir:98444 Length: 434 98.4 7E-07 4.4E-10 54.3 23.8 364 25-414 1-434 (434) 157 protein:vir:99916 Length: 504 98.4 9.1E-07 5.7E-10 53.7 24.1 397 1-415 1-504 (504) 158 protein:vir:94742 Length: 409 98.4 9.3E-07 5.8E-10 53.7 26.1 337 1-379 4-409 (409) 159 protein:vir:104082 Length: 485 98.3 1.4E-06 8.8E-10 52.6 21.9 392 1-419 16-485 (485) 160 protein:vir:5961 Length: 503 # 98.3 2E-06 1.3E-09 51.8 27.6 390 1-418 13-503 (503) 161 protein:vir:7768 Length: 484 # 98.1 4E-06 2.5E-09 50.2 21.4 394 1-419 1-484 (484) 162 protein:vir:9751 Length: 422 # 98.1 5.6E-06 3.5E-09 49.4 24.1 353 1-402 4-422 (422) 163 protein:vir:3964 Length: 453 # 98.1 5.8E-06 3.6E-09 49.3 21.8 382 1-413 1-453 (453) 164 protein:vir:4898 Length: 502 # 98.0 6E-06 3.7E-09 49.2 26.0 398 1-419 38-502 (502) 165 protein:vir:2500 Length: 501 # 98.0 4.4E-06 2.7E-09 50.0 18.0 377 1-416 23-501 (501) 166 protein:vir:2341 Length: 488 # 98.0 6.3E-06 3.9E-09 49.1 18.8 392 1-419 1-488 (488) 167 protein:vir:80959 Length: 499 98.0 8.5E-06 5.3E-09 48.4 22.0 383 1-413 1-499 (499) 168 protein:vir:2427 Length: 485 # 98.0 9E-06 5.6E-09 48.2 23.8 388 1-414 16-485 (485) 169 protein:vir:4073 Length: 279 # 97.9 1.9E-07 1.2E-10 57.5 9.6 269 43-376 1-279 (279) 170 protein:vir:79043 Length: 479 97.9 1.1E-05 6.6E-09 47.9 25.2 373 1-414 22-479 (479) 171 protein:vir:4782 Length: 522 # 97.9 1.2E-05 7.5E-09 47.5 20.9 392 1-415 1-522 (522) 172 protein:vir:95806 Length: 440 97.9 1.4E-05 8.8E-09 47.2 21.6 384 3-413 1-440 (440) 173 protein:vir:95113 Length: 474 97.8 1.7E-05 1.1E-08 46.7 26.9 372 1-413 21-474 (474) 174 protein:vir:9871 Length: 429 # 97.8 1.8E-05 1.1E-08 46.6 21.8 372 1-412 1-429 (429) 175 protein:vir:97447 Length: 474 97.7 2.3E-05 1.4E-08 46.0 26.3 372 1-413 27-474 (474) 176 protein:vir:94498 Length: 474 97.7 2.3E-05 1.4E-08 46.0 26.3 372 1-413 27-474 (474) 177 protein:vir:96494 Length: 501 97.7 2.5E-05 1.5E-08 45.9 25.3 393 1-419 38-501 (501) 178 protein:vir:96240 Length: 511 97.7 2.5E-05 1.6E-08 45.8 26.3 397 1-415 31-511 (511) 179 protein:vir:94805 Length: 492 97.7 2.7E-05 1.7E-08 45.6 26.1 377 1-413 35-492 (492) 180 protein:vir:93747 Length: 472 97.7 2.9E-05 1.8E-08 45.5 25.7 373 1-416 23-472 (472) 181 protein:vir:103951 Length: 511 97.7 3E-05 1.8E-08 45.4 26.3 397 1-415 39-511 (511) 182 protein:vir:80680 Length: 441 97.7 3.1E-05 1.9E-08 45.3 21.9 370 1-417 7-441 (441) 183 protein:vir:106639 Length: 481 97.7 3.2E-05 2E-08 45.2 22.9 388 1-414 6-481 (481) 184 protein:vir:99522 Length: 470 97.6 3.5E-05 2.1E-08 45.0 22.6 386 1-415 25-470 (470) 185 protein:vir:1634 Length: 409 # 97.6 3.7E-05 2.3E-08 44.9 26.2 339 1-379 1-409 (409) 186 protein:vir:9306 Length: 511 # 97.6 3.8E-05 2.4E-08 44.8 25.7 397 1-415 31-511 (511) 187 protein:vir:4223 Length: 486 # 97.6 4.1E-05 2.6E-08 44.6 22.6 388 1-414 1-486 (486) 188 protein:vir:3609 Length: 452 # 97.5 4.8E-05 3E-08 44.3 21.8 372 1-413 8-452 (452) 189 protein:vir:94546 Length: 506 97.5 4.8E-05 3E-08 44.2 21.9 394 1-415 22-506 (506) 190 protein:vir:1587 Length: 508 # 97.5 4.9E-05 3E-08 44.2 22.8 382 1-413 1-508 (508) 191 protein:vir:95899 Length: 474 97.5 4.9E-05 3.1E-08 44.2 23.6 369 1-415 26-474 (474) 192 protein:vir:96266 Length: 474 97.5 4.9E-05 3.1E-08 44.2 23.6 369 1-415 26-474 (474) 193 protein:vir:733 Length: 453 # 97.5 5E-05 3.1E-08 44.1 21.2 386 1-417 8-453 (453) 194 protein:vir:99072 Length: 479 97.5 5.3E-05 3.3E-08 44.0 26.2 386 1-419 1-473 (479) 195 protein:vir:3028 Length: 500 # 97.5 5.9E-05 3.6E-08 43.8 21.8 382 1-413 1-500 (500) 196 protein:vir:9815 Length: 500 # 97.5 5.9E-05 3.6E-08 43.8 21.8 382 1-413 1-500 (500) 197 protein:vir:97336 Length: 492 97.5 5.9E-05 3.7E-08 43.8 25.3 377 1-413 35-492 (492) 198 protein:vir:97171 Length: 512 97.4 6.9E-05 4.3E-08 43.4 25.9 397 1-415 31-512 (512) 199 protein:vir:1236 Length: 483 # 97.4 7E-05 4.3E-08 43.4 24.9 378 1-413 26-483 (483) 200 protein:vir:9568 Length: 410 # 97.4 7.3E-05 4.5E-08 43.3 24.2 343 1-403 1-410 (410) 201 protein:vir:78907 Length: 518 97.3 8.9E-05 5.5E-08 42.8 21.6 384 1-415 1-518 (518) 202 protein:vir:2732 Length: 501 # 97.3 9.4E-05 5.8E-08 42.7 26.7 393 1-415 38-501 (501) 203 protein:vir:78805 Length: 511 97.3 0.00011 6.7E-08 42.3 25.5 397 1-415 39-511 (511) 204 protein:vir:96366 Length: 511 97.3 0.00011 6.7E-08 42.3 25.5 397 1-415 39-511 (511) 205 protein:vir:99781 Length: 511 97.3 0.00011 7.1E-08 42.2 24.8 393 1-413 31-511 (511) 206 protein:vir:78083 Length: 537 97.2 0.00012 7.2E-08 42.2 30.0 391 1-419 16-537 (537) 207 protein:vir:78537 Length: 480 97.2 0.00012 7.6E-08 42.0 22.8 391 1-419 1-479 (480) 208 protein:vir:78227 Length: 480 97.1 0.00015 9.5E-08 41.5 22.6 391 1-419 1-479 (480) 209 protein:vir:107112 Length: 478 96.9 0.00025 1.6E-07 40.3 23.7 371 1-413 16-478 (478) 210 protein:vir:79703 Length: 505 96.9 0.00027 1.6E-07 40.2 23.0 382 1-413 1-505 (505) 211 protein:vir:105461 Length: 470 96.9 0.00028 1.8E-07 40.0 24.7 371 1-413 1-470 (470) 212 protein:vir:98883 Length: 517 96.8 0.0003 1.9E-07 39.9 22.5 392 1-414 1-517 (517) 213 protein:vir:105292 Length: 478 96.7 0.00044 2.7E-07 39.0 26.8 370 1-413 23-478 (478) 214 protein:vir:96839 Length: 474 96.6 0.00047 2.9E-07 38.8 25.0 368 1-415 26-474 (474) 215 protein:vir:97376 Length: 320 95.7 0.00057 3.5E-07 38.4 10.8 309 1-386 1-320 (320) 216 protein:vir:96179 Length: 468 95.5 0.0019 1.2E-06 35.4 22.8 364 1-415 25-468 (468) 217 protein:vir:102950 Length: 471 95.4 0.0022 1.4E-06 35.2 25.2 372 1-415 1-471 (471) 218 protein:vir:104892 Length: 558 94.2 0.005 3.1E-06 33.2 21.8 410 1-419 5-558 (558) 219 protein:vir:106571 Length: 499 93.7 0.0066 4.1E-06 32.5 25.7 387 1-419 16-498 (499) 220 protein:vir:100598 Length: 516 88.4 0.032 2E-05 28.8 19.2 395 1-416 7-516 (516) 221 protein:vir:9922 Length: 489 # 88.4 0.032 2E-05 28.8 19.6 390 1-414 6-489 (489) 222 protein:vir:104500 Length: 537 85.7 0.051 3.2E-05 27.7 21.4 407 1-417 6-537 (537) 223 protein:vir:106999 Length: 564 81.5 0.085 5.3E-05 26.5 20.4 409 1-416 1-564 (564) 224 protein:vir:101806 Length: 516 80.7 0.093 5.7E-05 26.2 19.9 395 1-416 7-516 (516) 225 protein:vir:101189 Length: 516 80.7 0.093 5.7E-05 26.2 19.9 395 1-416 7-516 (516) 226 protein:vir:102239 Length: 527 73.6 0.17 0.0001 24.8 22.6 393 1-418 1-527 (527) 227 protein:vir:102330 Length: 451 67.2 0.26 0.00016 23.8 21.5 370 1-413 1-451 (451) 228 protein:vir:80453 Length: 535 66.7 0.26 0.00016 23.8 23.1 386 1-416 32-535 (535) 229 protein:vir:95149 Length: 501 65.1 0.29 0.00018 23.5 24.9 383 1-413 1-501 (501) 230 protein:vir:106282 Length: 521 64.2 0.3 0.00019 23.4 19.1 398 1-417 9-521 (521) 231 protein:vir:101494 Length: 527 63.8 0.31 0.00019 23.4 23.1 393 1-418 1-527 (527) 232 protein:vir:5665 Length: 511 # 62.7 0.33 0.0002 23.2 17.5 398 1-419 1-504 (511) 233 protein:vir:105154 Length: 525 61.4 0.35 0.00022 23.1 16.4 405 1-416 1-525 (525) 234 protein:vir:81017 Length: 521 52.6 0.55 0.00034 22.0 17.6 396 1-414 8-521 (521) 235 protein:vir:80165 Length: 651 50.5 0.61 0.00038 21.8 15.2 371 1-419 153-609 (651) 236 protein:vir:94956 Length: 452 40.5 0.97 0.0006 20.7 23.3 368 1-414 1-452 (452) 237 protein:vir:6896 Length: 523 # 33.8 1.3 0.00083 19.9 19.3 396 1-414 9-523 (523) 238 protein:vir:78393 Length: 489 33.6 1.3 0.00083 19.9 25.2 386 1-414 1-489 (489) 239 protein:vir:108049 Length: 524 32.9 1.4 0.00086 19.8 21.4 396 1-414 11-524 (524) 240 protein:vir:103177 Length: 533 29.9 1.6 0.001 19.4 22.0 408 1-418 1-533 (533) 241 protein:vir:6596 Length: 521 # 29.1 1.7 0.001 19.3 20.3 395 1-414 8-521 (521) 242 protein:vir:97265 Length: 513 26.8 1.9 0.0012 19.0 26.4 384 1-417 1-513 (513) 243 protein:vir:94709 Length: 522 26.5 1.9 0.0012 19.0 22.5 343 1-419 42-466 (522) No 1 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=4.4e-110 Score=620.11 Aligned_cols=419 Identities=94% Similarity=1.422 Sum_probs=406.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |||.|+..++.+.+.+...+|+..++|...+.++..+|.++|+++++|++||++||++||++|+++++++++++.++..| T Consensus 1 ~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~ 80 (419) T protein:vir:14 1 MFFSRQLLSNLGQTQMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGEDRKPATDH 80 (419) T ss_pred CcccccccccccccccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCCcccccccc Confidence 99999999999888888889999999999999999999999999999999999999999999999999999998899999 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeecccccccce Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQRL 160 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (419) ++.++|+.+||++||+++||+.++.+++++||+|++|.|+..|.+.+|||++|+.|++..+.++.+.|.+.+...++.++ T Consensus 81 ~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~y~~~~~~~~~~~~ 160 (419) T protein:vir:14 81 PLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPVYRVRGSDPMPQRL 160 (419) T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEccCcccchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999989888888899999 Q ss_pred EEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 161 VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGN 240 (419) Q Consensus 161 i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n 240 (419) |+|+++++.|+++|+||+..+...+....+++++..++|+||++|+++|+.++..++..++++.+++++.|++.++|.+| T Consensus 161 i~h~~~~~~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n 240 (419) T protein:vir:14 161 VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDGWNAKFGGSGN 240 (419) T ss_pred eeEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccc Confidence 99999999999999999999999999999999999999999999999999998888888899999999999999999999 Q ss_pred cCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 241 AKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQA 320 (419) Q Consensus 241 ~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~ 320 (419) +|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..++++++|.|++.+.|+++||.|++.+||++ T Consensus 241 ag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~~~f~~~~L~P~~~~ie~~ 320 (419) T protein:vir:14 241 AKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQA 320 (419) T ss_pred cCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccccccc Q lcl|Aclame:pro 321 KTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIP 400 (419) Q Consensus 321 l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~ 400 (419) |+++||++.++.+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+|+++++.+++.+ T Consensus 321 l~~kll~~~~~~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n~~~~~~~~~~~ 400 (419) T protein:vir:14 321 KTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQQLP 400 (419) T ss_pred HhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccccccc Confidence 99999999888788999999999999999999999999999999999999999999999999999999999999998888 Q ss_pred CCCCCCccccccchhcccC Q lcl|Aclame:pro 401 MGKTEPTKAALDEIGRILS 419 (419) Q Consensus 401 ~~~~~~~~~~~~e~~~~~~ 419 (419) .++++++++..+|++|+|| T Consensus 401 ~~~~~~~~~~~~e~~~~l~ 419 (419) T protein:vir:14 401 VGKSEPTKAAIDEIGRILS 419 (419) T ss_pred CCCCCCccccccchhcccC Confidence 8999999999999999999 No 2 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=7.6e-110 Score=618.81 Aligned_cols=419 Identities=100% Similarity=1.477 Sum_probs=407.8 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |||.|+.++..+...+.+.+|+..++|+..+.++..|+.++|+++|+|++||++||++||++|+++++++++++.++..| T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~~~~~~~~ 80 (419) T protein:vir:80 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) T ss_pred CCcccccccccCcCCCCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEecCCCccccccc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888999 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeecccccccce Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQRL 160 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (419) ++.++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|||++|+.|++..+.++.+.|.+.+...++.++ T Consensus 81 ~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~y~~~~~~~~~~~~ 160 (419) T protein:vir:80 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQRL 160 (419) T ss_pred HHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEEEEEcCccccchhh Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999 Q ss_pred EEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 161 VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGN 240 (419) Q Consensus 161 i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n 240 (419) |+|+++++.|+++|+||+..+...+.+..+++++..++|+||+.|++++++++...+..++++.+++++.|++.++|.+| T Consensus 161 i~h~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n 240 (419) T protein:vir:80 161 VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGN 240 (419) T ss_pred eEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHHHHHHHhcCccc Confidence 99999999999999999999999999999999999999999999999999998887788899999999999999999999 Q ss_pred cCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHH Q lcl|Aclame:pro 241 AKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQA 320 (419) Q Consensus 241 ~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~ 320 (419) +|+++++++|++|+++++++.|+|++|.+++++++||++|||||.++|..++++++|.|++.+.|+++||.|++.+||++ T Consensus 241 ~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~f~~~~l~P~~~~ie~~ 320 (419) T protein:vir:80 241 AKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQA 320 (419) T ss_pred cCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccccccc Q lcl|Aclame:pro 321 KTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIP 400 (419) Q Consensus 321 l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~ 400 (419) ++++||++.++.+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+|+++.+.+++.+ T Consensus 321 l~~kll~~~~~~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~~~~n~~~~~~~~~~~ 400 (419) T protein:vir:80 321 KTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIP 400 (419) T ss_pred HhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccccccc Confidence 99999999888888999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCCccccccchhcccC Q lcl|Aclame:pro 401 MGKTEPTKAALDEIGRILS 419 (419) Q Consensus 401 ~~~~~~~~~~~~e~~~~~~ 419 (419) .++++++++..+|-+|||| T Consensus 401 ~~~~~~~~~~~~~~~~~l~ 419 (419) T protein:vir:80 401 MGKTEPTKAALDEIGRILS 419 (419) T ss_pred CCCCCchhhhHHHHHhhcC Confidence 9999999999999999999 No 3 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=2.1e-102 Score=578.04 Aligned_cols=414 Identities=50% Similarity=0.875 Sum_probs=377.3 Q ss_pred CCccchhcccccccccccchHHHHhhc---CCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcce-e Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLG---SARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRK-P 76 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~-~ 76 (419) |||++++++.+...+ ..+++..+++ ...+.++..|+.++|+++++||+||++||++||++||+++++++++.. . T Consensus 1 m~~~~~~~~~~~~~s--~~~~w~~~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g~~~~ 78 (421) T protein:vir:10 1 MFIPQMFEGKKRSVS--GGGFWEAMLGGVRSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDKNGGRQR 78 (421) T ss_pred CCCcchhcccccccC--cchhhHHHhhhhccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCceee Confidence 999998888765533 3345555544 445567888999999999999999999999999999999998877654 5 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEee-cccc Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVA-GADP 155 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~-~~~~ 155 (419) +..|++.++|+.+||++||+++||+.++.+++++||||++|.|+..|++.+|||++|+.|++..+.++...|++. .... T Consensus 79 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y~~~~~g~~ 158 (421) T protein:vir:10 79 ATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMPYYEIPEIGET 158 (421) T ss_pred cccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceEEEEEcCCCcE Confidence 678999999999999999999999999999999999999999999999999999999999999988877666653 2356 Q ss_pred cccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 156 LPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 156 ~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) ++.++|+|+++++.++++|+||+..+..++.+..+++++..++|+||++|+++|+.++...+.+++++++++++.|++.+ T Consensus 159 ~~~~eiih~~~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~~~~~~~~ 238 (421) T protein:vir:10 159 LPMRMMHHVKVFSLDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLLAKWTDRY 238 (421) T ss_pred EchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHHHHHHHHh Confidence 78899999999999999999999999999999999999999999999999999999988878889999999999999999 Q ss_pred ccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 236 GGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVK 315 (419) Q Consensus 236 ~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~ 315 (419) +|.+|+|+++++++|++|+++++++.|+||.|.+++++++||++|||||.++|..+.++++|+|++.+.|+++||.|++. T Consensus 239 ~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~tl~P~~~ 318 (421) T protein:vir:10 239 SGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQGLQFVMYTLLAWLK 318 (421) T ss_pred cCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccccHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccc Q lcl|Aclame:pro 316 RHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASK 395 (419) Q Consensus 316 ~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~ 395 (419) +||++|+++||++.+..+++++||.+.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||++++|+|+++.+. T Consensus 319 ~ie~~ln~kL~~~~~~~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~ 398 (421) T protein:vir:10 319 RHEGALQRDLLLPSERRDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDKYLTPLNMVDSAQ 398 (421) T ss_pred HHHHHHhhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccc Confidence 99999999999998877889999999999999999999999999999999999999999999999999999999998776 Q ss_pred cccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 396 PQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 396 ~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) ..+.+ +.++.....|.+++++ T Consensus 399 ~~~~~---~~~~~~~~~e~d~~~~ 419 (421) T protein:vir:10 399 IIPGD---KKPTAQQMAEIDTILS 419 (421) T ss_pred cccCC---CCcccccCcccccccc Confidence 65443 3334445678899999 No 4 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=1.9e-100 Score=567.25 Aligned_cols=414 Identities=47% Similarity=0.820 Sum_probs=368.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcce-eecc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRK-PATD 79 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~-~~~~ 79 (419) |||++++++.......... .+...+...++.++..++.++|+++++|++||++||++||++|++++++++++.. .... T Consensus 1 m~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~~~~~~~ 79 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQ-VVPGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENGGREIAFD 79 (419) T ss_pred CcchhhhccCCcccccccc-ccccccccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCceecccc Confidence 9999988776544333322 2223334456677889999999999999999999999999999999998887754 4568 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec-cccccc Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG-ADPLPQ 158 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~ 158 (419) |++.++|+.+||++||+++||+.++.+++++|++|++|.|+..|.+.+|+|++|+.|++..+.++...|.+.+ ...++. T Consensus 80 ~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~~y~~~~~~~~~~~ 159 (419) T protein:vir:57 80 HPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMPYYDIPSIGEILPM 159 (419) T ss_pred chHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceEEEEEcCCceEEch Confidence 8999999999999999999999999999999999999999999999999999999999999888877666543 346788 Q ss_pred ceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 159 RLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGS 238 (419) Q Consensus 159 ~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (419) ++|+|+++++.++++|+||+..+...+.+..++++++.++|+||++|+++|+.+.......++++++++++.|.+.++|. T Consensus 160 ~~vih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~~~~~~~g~ 239 (419) T protein:vir:57 160 RMVHHIKSFSLDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAKWTERYGGV 239 (419) T ss_pred hhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHHHHHHhccc Confidence 99999999999999999999999999999999999999999999999999999987777889999999999999999999 Q ss_pred cccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 239 GNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHE 318 (419) Q Consensus 239 ~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~ 318 (419) +|+|+++++++|++|++++++++|+||.|.+++++++||++|||||.++|..+.++++|+|++.+.|+++||.|++.+|| T Consensus 240 ~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie 319 (419) T protein:vir:57 240 RNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQGLQYVIYTMLAILKRHE 319 (419) T ss_pred cccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccccc Q lcl|Aclame:pro 319 QAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQP 398 (419) Q Consensus 319 ~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~ 398 (419) ++++++||++.++.+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+|+++.+.+.. T Consensus 320 ~~l~~~ll~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~ 399 (419) T protein:vir:57 320 SAMMRDLLLPSERRDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYLTPLNMVDSKALTG 399 (419) T ss_pred HHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccccc Confidence 99999999998877889999999999999999999999999999999999999999999999999999999998766554 Q ss_pred ccCCCCCCccccccchhcccC Q lcl|Aclame:pro 399 IPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 399 ~~~~~~~~~~~~~~e~~~~~~ 419 (419) .....++ ...+..++.+ T Consensus 400 ~~~~~~~----~~~~~~~~~~ 416 (419) T protein:vir:57 400 IGKATPQ----QLKDIEAILC 416 (419) T ss_pred ccCCCcc----cCcchhhhhh Confidence 3322111 1122222222 No 5 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=1.6e-99 Score=562.27 Aligned_cols=409 Identities=32% Similarity=0.554 Sum_probs=367.8 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+|.+.+++++.........+...+.++..+.++..++.+.|+++|+|++||++||+++|++|+++++++++++.++..| T Consensus 1 ~~f~~~f~r~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~~~~~ 80 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTTPAELAEAIGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTLKTRVVDE 80 (413) T ss_pred CccchhhccCccCCccchHHHHHhhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcceeeccc Confidence 99988888766555443334444444455677888999999999999999999999999999999999998888889999 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec----cccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG----ADPL 156 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~~ 156 (419) ++.++|+.+||++||+++||+.++.+++++||||+++.|+ .|++.+|||++|++|++..+.++...|++.. ...+ T Consensus 81 ~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~~ 159 (413) T protein:vir:48 81 RLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQWQPVYQVTFPDGSVDVL 159 (413) T ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCceEEEEEEecCceEEEE Confidence 9999999999999999999999999999999999999987 5899999999999999998887765554432 2457 Q ss_pred ccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 157 PQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFG 236 (419) Q Consensus 157 ~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (419) ++++|+|+++++.++++|+||+..+..++.++.++.++..++|+||+.|++++++++.+ ++++.+++++.|++.++ T Consensus 160 ~~~evih~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~----~~e~~~~~~~~~~~~~~ 235 (413) T protein:vir:48 160 TQDEIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKL----TPDAYERLKKDFEERHT 235 (413) T ss_pred ccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC----CHHHHHHHHHHHHHHhc Confidence 88999999999999999999999999999999999999999999999999999998654 67899999999999999 Q ss_pred cccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 237 GSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKR 316 (419) Q Consensus 237 g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~ 316 (419) |.+|+|+++++++|++|++++.++.|+||.|.+++++++||++|||||.++|..+.++++|.|++...|+++||.|++++ T Consensus 236 g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~i~P~~~~ 315 (413) T protein:vir:48 236 GLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLTR 315 (413) T ss_pred CccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccc Q lcl|Aclame:pro 317 HEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKP 396 (419) Q Consensus 317 i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~ 396 (419) ||++|+++|+++.++.+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+|+++.+.. T Consensus 316 ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~ 395 (413) T protein:vir:48 316 IEQRINTGLVRESKQGKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTSPSA 395 (413) T ss_pred HHHHHHhhccCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeccccccccccc Confidence 99999999999888778899999999999999999999999999999999999999999999999999999999998877 Q ss_pred ccccCCCCCCccccccchhc Q lcl|Aclame:pro 397 QPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 397 ~~~~~~~~~~~~~~~~e~~~ 416 (419) ++....++++++. +|... T Consensus 396 ~~~~~~~~~~~~~--~~~~~ 413 (413) T protein:vir:48 396 GDDNGKKKESGDA--DKTAS 413 (413) T ss_pred cccCCCCCCCCCc--cccCC Confidence 6655444443322 33333 No 6 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=5.3e-99 Score=559.34 Aligned_cols=409 Identities=31% Similarity=0.548 Sum_probs=362.4 Q ss_pred CCccchhcccccccccccchHHHHhh-cCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeecc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALL-GSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATD 79 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~ 79 (419) |+||+++++++..........+...+ .+....++..++.++++++++|++||++||++||++|+++++..++++..+.. T Consensus 1 Mg~f~~lf~r~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~~~~~~ 80 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTTPAELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLKQRATG 80 (414) T ss_pred CchhhhhhccCccCcccchhhHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCCceeeccc Confidence 99888766655444444444444444 45567788889999999999999999999999999999999999999888999 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec----ccc Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG----ADP 155 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----~~~ 155 (419) |++.++|+.+||++||+++||+.++.+++++||||+++.++ .|.+.+|+|++|+.|++..+.++...|++.. ... T Consensus 81 ~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~~y~~~~~~g~~~~ 159 (414) T protein:vir:44 81 ERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWEPVYQVTFPDGSTDV 159 (414) T ss_pred chHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCcEEEEEEecCceEEE Confidence 99999999999999999999999999999999999999887 5999999999999999998877765555432 345 Q ss_pred cccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 156 LPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 156 ~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) +++++|+|+++++.|+++|+||+..+..++.++.+++++..++|+||++|++++++++.+ ++++.+++++.|++.+ T Consensus 160 ~~~~evih~~~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----~~e~~~~~~~~~~~~~ 235 (414) T protein:vir:44 160 LSQEDIWHVRTLTLDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTL----SDQAYERLKKDFEERH 235 (414) T ss_pred EccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC----CHHHHHHHHHHHHHHh Confidence 888999999999999999999999999999999999999999999999999999998654 6789999999999999 Q ss_pred ccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 236 GGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVK 315 (419) Q Consensus 236 ~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~ 315 (419) +|.+|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..++++++|+|++.+.|+++||.|++. T Consensus 236 ~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~l~P~~~ 315 (414) T protein:vir:44 236 TGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPYLT 315 (414) T ss_pred cCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccc Q lcl|Aclame:pro 316 RHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASK 395 (419) Q Consensus 316 ~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~ 395 (419) +||++++++|+++.+..+++++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+|++.... T Consensus 316 ~ie~~ln~~L~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~ 395 (414) T protein:vir:44 316 RIEQRINTGLVRKSKQGVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTTKPS 395 (414) T ss_pred HHHHHHHhhcCCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceecccccccccCC Confidence 99999999999988877788999999999999999999999999999999999999999999999999999999976554 Q ss_pred cccccCCCCCCccccccchhc Q lcl|Aclame:pro 396 PQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 396 ~~~~~~~~~~~~~~~~~e~~~ 416 (419) .......+++ +...++... T Consensus 396 ~~~~~~~~~~--~~~~d~~~~ 414 (414) T protein:vir:44 396 DGSKAGKQKD--NANADETTS 414 (414) T ss_pred ccccCCCCCC--CCCCCCCCC Confidence 3332222222 222233333 No 7 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=1.1e-97 Score=552.25 Aligned_cols=402 Identities=31% Similarity=0.507 Sum_probs=347.3 Q ss_pred CCccchhcccccccccccc--hHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSG--GWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~ 78 (419) |+|.+.+++ ++...+... ++....+ +...++..++.++|+++++|++||++||++||++|++++++.+.+..++. T Consensus 17 ~~~~~lf~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~~~~~~ 93 (424) T protein:vir:45 17 VLLDALFRS-KSLENPSTPITGDAVDTD--GLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPLHVMRRHKGKVEPAR 93 (424) T ss_pred HHHHhhccc-cCCCCCccccchhhhhhh--ccccCCceechHHhhccHHHHHHHHHHHHHHhhCceEEEEecCCceeecc Confidence 665544433 333333221 2222222 23445678999999999999999999999999999999998877888888 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEe--eccccc Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRV--AGADPL 156 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~--~~~~~~ 156 (419) .|++.++|+.+||++||+++||+.++.+++++||+|++|.|+..|.+.+|+|++|+.|++..+.+...+.+. .+...+ T Consensus 94 ~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~ 173 (424) T protein:vir:45 94 DHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTGGRYTYGLYNEYGAFAI 173 (424) T ss_pred cchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcCCeEEEEEEecCceEEE Confidence 999999999999999999999999999999999999999999999999999999999999876554332222 234568 Q ss_pred ccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 157 PQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFG 236 (419) Q Consensus 157 ~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (419) ++++|+|+++++.++++|+||+..+...+.++.+++++..++|+||++|++++++++.+ ++++.+++++.|++.++ T Consensus 174 ~~~eVih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----~~e~~~~~~~~~~~~~~ 249 (424) T protein:vir:45 174 SPDDMIHIRALGNNQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGL----NKESWGWLKDQWQKASQ 249 (424) T ss_pred CcccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC----CHHHHHHHHHHHHHHhc Confidence 88999999999999999999999999999999999999999999999999999998654 67899999999999998 Q ss_pred cc-cccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHH Q lcl|Aclame:pro 237 GS-GNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVK 315 (419) Q Consensus 237 g~-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~ 315 (419) |. +|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..++++++|.|++.+.|+++||.|++. T Consensus 250 g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~~ 329 (424) T protein:vir:45 250 ALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVRYTMMPWVT 329 (424) T ss_pred cccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHH Confidence 85 68999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccc Q lcl|Aclame:pro 316 RHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDAS 394 (419) Q Consensus 316 ~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~ 394 (419) +||++++++||++.+. .+++++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+|+++.. T Consensus 330 ~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~~~n~~~~~ 409 (424) T protein:vir:45 330 NWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLVSVNAANPA 409 (424) T ss_pred HHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccc Confidence 9999999999998775 467899999999999999999999999999999999999999999999999999999998643 Q ss_pred ccccccCCCCCCccccccc Q lcl|Aclame:pro 395 KPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 395 ~~~~~~~~~~~~~~~~~~e 413 (419) .....+ ..+++..+| T Consensus 410 ~~~~~~----~~~~~~~~~ 424 (424) T protein:vir:45 410 GDFKPP----KNDEGKTNE 424 (424) T ss_pred cccCCC----CCCCCCCCC Confidence 221111 111111122 No 8 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=1.2e-97 Score=552.01 Aligned_cols=406 Identities=26% Similarity=0.460 Sum_probs=361.3 Q ss_pred CCccchhcccccccccc--cchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPG--SGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~ 78 (419) |+|.|.++++....... ..+++..+|++..+.++..++.++++++|+|++||++||++||++|++++++++++...+. T Consensus 1 m~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~~~~~~ 80 (416) T protein:vir:12 1 MLLERMFEKRSGSSDHEDGFNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDGGIERKP 80 (416) T ss_pred CccchhcccccCccccCccchhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcccccc Confidence 99998887665444332 3456788899988899999999999999999999999999999999999999888888888 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEe---ec-cc Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRV---AG-AD 154 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~---~~-~~ 154 (419) .|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|||++|++|++..+.++...++. .+ .. T Consensus 81 ~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~g~~~ 160 (416) T protein:vir:12 81 EHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQTVLNGKAI 160 (416) T ss_pred ccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEEEEecCCeEE Confidence 999999999999999999999999999999999999999999999999999999999999887665433332 22 33 Q ss_pred ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) .+++++|+|+++++.++++|+||+.++..++.++.+++++..++|+||+.|++++++++. +++++++++++.|+.. T Consensus 161 ~~~~~eiih~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~----~~~e~~~~~~~~~~~~ 236 (416) T protein:vir:12 161 ELYDYEVLHFKGLSTDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAF----LDEKPKENVRKEWKRV 236 (416) T ss_pred EecCccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCC----CCHHHHHHHHHHHHHH Confidence 577899999999999999999999999999999999999999999999999999999764 4778999999988765 Q ss_pred hccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) . ++++++++++|++|+++++++.|+|++|.+++++++||++|||||.++|..+.++++|.+++.+.|+++||.|++ T Consensus 237 ~----~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~ 312 (416) T protein:vir:12 237 N----KVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEYVRNTLQPWI 312 (416) T ss_pred h----cCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHHHHHHHHHHH Confidence 3 567899999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccc Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDA 393 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~ 393 (419) .+||++++++|+++.+. .+++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++|+|++++ T Consensus 313 ~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~ 392 (416) T protein:vir:12 313 VNFEQELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISSLNYVFL 392 (416) T ss_pred HHHHHHHHHhhcCchhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccc Confidence 99999999999988875 46889999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccCCCCCC-cc--ccccch Q lcl|Aclame:pro 394 SKPQPIPMGKTEP-TK--AALDEI 414 (419) Q Consensus 394 ~~~~~~~~~~~~~-~~--~~~~e~ 414 (419) +.....+..+.+. .+ ++.+|+ T Consensus 393 ~~~~~~~~~~~~~~~~gge~~~~g 416 (416) T protein:vir:12 393 DFLEEYQRLKAGGAMKGGDNKNEG 416 (416) T ss_pred cccchhhccccccccCCCCCcCCC Confidence 8776554332221 11 122333 No 9 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=7.2e-97 Score=547.66 Aligned_cols=398 Identities=27% Similarity=0.451 Sum_probs=354.1 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+|++.+++..... +.....+..++|.. .++..++.++|+++++|++||++||++||++||++++++ ++..++..| T Consensus 1 m~f~~~~~~~~~~~-~~~~~~~~~~~g~~--~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~-~~~~~~~~~ 76 (409) T protein:vir:10 1 MLFRKGFKNQSQEI-SIDDKKILEWLGIN--PSETYVNGKSCLKQATVFGCIRILSDNISKLPIKIYQKK-DGIKRVPDH 76 (409) T ss_pred CcccccccCcCCCC-CCChHHHHHHhcCC--cCcceechhhhhccHHHHHHHHHHHHhhhhCceEEEEec-CCeeeccCc Confidence 99887776655443 34455566777754 456678999999999999999999999999999999864 455677789 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EEEEee--- Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PMYRVA--- 151 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~~~~~--- 151 (419) ++.++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.++. ..|.+. T Consensus 77 ~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y~~~~~~ 156 (409) T protein:vir:10 77 YLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVWYLYTDDL 156 (409) T ss_pred hHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEEEEEEeCC Confidence 99999999999999999999999999999999999999999999999999999999998876432 122221 Q ss_pred -cccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 152 -GADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG 230 (419) Q Consensus 152 -~~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (419) ....+++++|+|+++++.++++|+||+..+...+....++++++.++|+||+.|++++++++.+ ++++.+++++. T Consensus 157 g~~~~~~~~evih~r~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l----~~e~~~~~~~~ 232 (409) T protein:vir:10 157 GQRHKFMSDEILHFKGLTADGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDL----NPEAEEVFKEN 232 (409) T ss_pred ceeEEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCC----CHHHHHHHHHH Confidence 2335778999999999999999999999999999999999999999999999999999987643 67899999999 Q ss_pred HHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHh Q lcl|Aclame:pro 231 WNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) Q Consensus 231 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i 310 (419) |++.+.|.+|+|+++++++|++|++++.++.|+|++|.+++++++||++|||||.++|..+.++++|.+++.+.|+++|| T Consensus 233 ~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~~~f~~~~l 312 (409) T protein:vir:10 233 FERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNITEQNREFYIDTL 312 (409) T ss_pred HHHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccc Q lcl|Aclame:pro 311 LPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMN 389 (419) Q Consensus 311 ~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n 389 (419) .|++.+||++|+++||++.+. .+++++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+| T Consensus 313 ~P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~~~~~n 392 (409) T protein:vir:10 313 QSILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGDVLLINGN 392 (409) T ss_pred HHHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccC Confidence 999999999999999988774 5688999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccCCCCCCc Q lcl|Aclame:pro 390 MVDASKPQPIPMGKTEPT 407 (419) Q Consensus 390 ~~~~~~~~~~~~~~~~~~ 407 (419) ++|++..++... ++++. T Consensus 393 ~~~~~~~~~~~~-kgGe~ 409 (409) T protein:vir:10 393 MIPVKMAGEQYS-KGGEK 409 (409) T ss_pred ccchhhcccccc-ccCCC Confidence 999987654322 22222 No 10 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=1.2e-96 Score=546.47 Aligned_cols=409 Identities=25% Similarity=0.428 Sum_probs=359.2 Q ss_pred CCccchhcc----cccc--cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLS----NLGQ--TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |+|+++++. ++.. ..+....++..++|.. .++..++.++|+++++|++||++||++||++||+++++.+++. T Consensus 1 M~~~~~~f~~~~r~~~~~~~~~~~~~~~~~~~g~~--~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~~ 78 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGIS--PSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYGI 78 (429) T ss_pred CchhhhhhcccccCcccccccCCChHHHHHHhcCC--CCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCCce Confidence 998866542 2211 1222345667777754 3566789999999999999999999999999999999998888 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE------EE Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP------MY 148 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~------~~ 148 (419) ..+..|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|+.|++..+..+.. .+ T Consensus 79 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~~~~~ 158 (429) T protein:vir:10 79 QRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMWY 158 (429) T ss_pred eeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEEE Confidence 889999999999999999999999999999999999999999999999999999999999999988754321 11 Q ss_pred E--eec-ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHH Q lcl|Aclame:pro 149 R--VAG-ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASV 224 (419) Q Consensus 149 ~--~~~-~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~ 224 (419) . ..+ ...+++++|+|+++ ++.++++|+||+..+...+..+.+++++..++|+||+.|++++++++.+ ++++. T Consensus 159 ~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l----~~e~~ 234 (429) T protein:vir:10 159 VVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL----NEDAK 234 (429) T ss_pred EEccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC----CHHHH Confidence 1 122 34577888999986 5789999999999999999999999999999999999999999998644 67889 Q ss_pred HHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHH Q lcl|Aclame:pro 225 DRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ 304 (419) Q Consensus 225 ~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~ 304 (419) +++++.|++.+.|..|+|+++++++|++|+++++++.|+|++|.+++++++||++|||||.++|..+.++++|++++.+. T Consensus 235 ~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~ 314 (429) T protein:vir:10 235 KVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQ 314 (429) T ss_pred HHHHHHHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI 383 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~ 383 (419) |+++||.|++.+||++++++||++.+. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||+ T Consensus 315 f~~~~l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~ 394 (429) T protein:vir:10 315 FYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDR 394 (429) T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCe Confidence 999999999999999999999998775 4678999999999999999999999999999999999999999999999999 Q ss_pred eeeccccccccccccccCC---CCCCccccccchh Q lcl|Aclame:pro 384 YLSPMNMVDASKPQPIPMG---KTEPTKAALDEIG 415 (419) Q Consensus 384 ~~~~~n~~~~~~~~~~~~~---~~~~~~~~~~e~~ 415 (419) +++|+|++|++..++.+.. +.++..+..+|++ T Consensus 395 ~~~~~n~~~~d~~~~~~~k~g~~~~~~~~~~~e~~ 429 (429) T protein:vir:10 395 LLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 429 (429) T ss_pred eeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999999876543321 2233344556777 No 11 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=1.2e-96 Score=546.40 Aligned_cols=396 Identities=27% Similarity=0.383 Sum_probs=349.0 Q ss_pred CCccchhcccccccc--------------c-----------ccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQ--------------P-----------GSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLL 55 (419) Q Consensus 1 M~f~~~~~~~~~~~~--------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~i 55 (419) |++++++++.+.... + ..++++..+.+. .+.++..++.++|+++++|++||++| T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~al~~~~V~~ci~~I 79 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRR-GELNGGTGRETRALRNMAVLRCVTLI 79 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhcc-CccCcceechhhhhccHHHHHHHHHH Confidence 998877766443211 0 112334444443 34567789999999999999999999 Q ss_pred HHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCce Q lcl|Aclame:pro 56 AESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEA 135 (419) Q Consensus 56 a~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~ 135 (419) |++||++|+++++++ +++.....|++.++|+.+||++||+++||+.++.+++++||+|++|.|+. |.+++|+|++|+. T Consensus 80 a~~iA~lp~~v~~~~-~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~L~pl~~~~ 157 (431) T protein:vir:10 80 SGTIGMLPMNLISSD-DSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSG-NRPIRLIPMDRGS 157 (431) T ss_pred HHhhccCceEEEEec-CceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CceEEEEEEcCce Confidence 999999999999874 44556778999999999999999999999999999999999999999985 8999999999999 Q ss_pred eEEEEccceeEEEEee----cccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEe Q lcl|Aclame:pro 136 VTVMKGPDLKPMYRVA----GADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIER 211 (419) Q Consensus 136 v~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~ 211 (419) |++..+.++...|.+. ....++.++|+|+++++.|+++|+||+..+...+.++.+++++..++|+||++|++++++ T Consensus 158 v~~~~~~~~~~~y~~~~~~g~~~~~~~~dViHir~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~ 237 (431) T protein:vir:10 158 AKGRLTSTWQIVYDYTTPTGDKIELPAREVFHLRDLSIDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEV 237 (431) T ss_pred eEEEEcCCCeEEEEEEeCCceEEEEchhhEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEec Confidence 9998887776655543 233578899999999999999999999999999999999999999999999999999999 Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc Q lcl|Aclame:pro 212 PTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE 291 (419) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~ 291 (419) ++. +++++.+++++.|++.++|.+|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|..+ T Consensus 238 ~~~----ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~ 313 (431) T protein:vir:10 238 PKE----LSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDD 313 (431) T ss_pred CCC----CCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCC Confidence 864 4788999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred CcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCC----CcCHH Q lcl|Aclame:pro 292 RATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWG----WLSIN 367 (419) Q Consensus 292 ~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g----~~T~N 367 (419) +++++|.|++.+.|+++||.|++.+||++++++||++.++.+++++||++.+++.|.+++++.+++++.+| +||+| T Consensus 314 ~~t~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~N 393 (431) T protein:vir:10 314 TSWGSGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKMLGQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQN 393 (431) T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhcCCceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHH Confidence 99999999999999999999999999999999999987777889999999999999999999999998765 49999 Q ss_pred HHHHHhCCCCCCC--cceeeeccccccccccccccCCC Q lcl|Aclame:pro 368 DIRRLENMPPVKG--GDIYLSPMNMVDASKPQPIPMGK 403 (419) Q Consensus 368 E~R~~lGl~p~~g--gD~~~~~~n~~~~~~~~~~~~~~ 403 (419) |+|+++|+||++| ||++++|.|+.+.++..+.+.+. T Consensus 394 E~R~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~~p~~~ 431 (431) T protein:vir:10 394 EVREMLDLPRADDPVADQLRNPMTQKQKGSGDEPPATT 431 (431) T ss_pred HHHHHhCCCCCCCccccceecccccccCCCCCCCCCCC Confidence 9999999999965 99999999998776544322211 No 12 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=1.3e-96 Score=546.25 Aligned_cols=408 Identities=28% Similarity=0.420 Sum_probs=354.0 Q ss_pred CCccchhccccccccccc---------chHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS---------GGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |+|+.+.++.+...++.+ .++....++...+.++..|+.++|+++|+||+||++||++||++||+++++.+ T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:10 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCceeEEEecC Confidence 888877666554443311 12233334555677889999999999999999999999999999999999999 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEee Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVA 151 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 151 (419) ++..++..|++.++|+.+||++||+++||+.++.+++++||||+++.|+ .|++.+|+|++|+.|++..+.++...|++. T Consensus 87 ~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~ 165 (432) T protein:vir:10 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNTAYRYR 165 (432) T ss_pred CCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCCcEEEEEE Confidence 9988888999999999999999999999999999999999999999987 599999999999999999988776655543 Q ss_pred c----ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHH Q lcl|Aclame:pro 152 G----ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRI 227 (419) Q Consensus 152 ~----~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (419) . ...++.++|+|+++++.++++|+||+..+...+.++.+++++..++|+||++|++++++++.+ ++++++++ T Consensus 166 ~~~g~~~~~~~~~iih~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l----~~e~~~~~ 241 (432) T protein:vir:10 166 RTDGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFL----TDDQYDSF 241 (432) T ss_pred ecCceEEEEcCccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCC----CHHHHHHH Confidence 2 235788999999999999999999999999999999999999999999999999999998654 67777776 Q ss_pred HHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcc---cccHHHHHHH Q lcl|Aclame:pro 228 TDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERAT---FSNIEHQSLQ 304 (419) Q Consensus 228 ~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~---~sn~e~~~~~ 304 (419) ++.| .|..|+|++++|++|++|++++++++|+||+|.+++++++||++|||||.++|..+.++ ++|+|++++. T Consensus 242 ~~~~----~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~ 317 (432) T protein:vir:10 242 AKKV----SGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLG 317 (432) T ss_pred HHHH----hhhhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHH Confidence 6655 56778999999999999999999999999999999999999999999999999877654 4889999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce- Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI- 383 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~- 383 (419) |+++||.|++.+||++++++|+++.++.+++++||++.+++.|.+++++.+++++++|++|+||+|+++||||++|||. T Consensus 318 f~~~tl~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~~ 397 (432) T protein:vir:10 318 FLSMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAV 397 (432) T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcce Confidence 9999999999999999999999998877889999999999999999999999999999999999999999999997754 Q ss_pred eeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 384 YLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 384 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) +++++|++|++..+... .++++++.+++.+.-+| T Consensus 398 ~~~~~~~~pl~~~~~~~--~~~~~~~~~~~~~~~~~ 431 (432) T protein:vir:10 398 LTVQSAMVPLDSIGLQA--SPEPASGLGNQQQDKVS 431 (432) T ss_pred EeecCcccchhhhcccC--CCCCCCCCCCccccccc Confidence 56899999988765432 23334444555555555 No 13 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=2.8e-96 Score=544.48 Aligned_cols=410 Identities=24% Similarity=0.339 Sum_probs=351.9 Q ss_pred CC-ccchhcccccccccccchHHHHh-------hcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCC Q lcl|Aclame:pro 1 MF-FSRQLLSNLGQTQPGSGGWVSAL-------LGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGD 72 (419) Q Consensus 1 M~-f~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~ 72 (419) || |||+.+++.....+.+...+..+ ++ +.+.++..|+.++|+++++|++||++||++||++||++++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~ 79 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFA-GAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQ 79 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhc-chhhcCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccC Confidence 99 77776665554444333322222 32 24556788999999999999999999999999999999999988 Q ss_pred cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec Q lcl|Aclame:pro 73 DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG 152 (419) Q Consensus 73 ~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 152 (419) +......++..++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.++...|.+.. T Consensus 80 g~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y~~~~ 159 (454) T protein:vir:93 80 GIRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITP 159 (454) T ss_pred CccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEEEEEEe Confidence 87777777777888889999999999999999999999999999999999999999999999999998887766555432 Q ss_pred --------ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHH Q lcl|Aclame:pro 153 --------ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQAS 223 (419) Q Consensus 153 --------~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~ 223 (419) ...++.++|+|+++ .+.++++|+||+..+...+.+..+++++..++|+||++|++++++++.+ ++++ T Consensus 160 ~~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----~~e~ 235 (454) T protein:vir:93 160 DRNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSI----TEEN 235 (454) T ss_pred ccccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCC----CHHH Confidence 22477888999985 6778999999999999999999999999999999999999999998644 6789 Q ss_pred HHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHH Q lcl|Aclame:pro 224 VDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSL 303 (419) Q Consensus 224 ~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~ 303 (419) .+++++.|++.++| .|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|..++++++|+|++.+ T Consensus 236 ~~~~~~~~~~~~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~ 314 (454) T protein:vir:93 236 AKKLKSNWDSGYTG-ENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQ 314 (454) T ss_pred HHHHHHHHHHHhcc-cccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHH Confidence 99999999999988 68999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI 383 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~ 383 (419) .|+++||.|++..||++++++|+++. +++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||+ T Consensus 315 ~f~~~~l~P~~~~ie~~ln~~L~~~~---~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~ 391 (454) T protein:vir:93 315 QYYSQCLQTLIESIELLLDEALETGE---NESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDA 391 (454) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCC---CcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCe Confidence 99999999999999999999998753 457999999999999999999999999999999999999999999999999 Q ss_pred eeeccccccccccccccC--------CCC--CCccccccchhcccC Q lcl|Aclame:pro 384 YLSPMNMVDASKPQPIPM--------GKT--EPTKAALDEIGRILS 419 (419) Q Consensus 384 ~~~~~n~~~~~~~~~~~~--------~~~--~~~~~~~~e~~~~~~ 419 (419) +++++|+.+++..++.+. +++ .+.+..+.++++-++ T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 437 (454) T protein:vir:93 392 LYLQQQNYSLEALSRRDAREDPFASSGKTASVPQAVAASDGNKAIT 437 (454) T ss_pred eeeccCccchHhhhccCcccCCCCCCccCCCCCCCCCCCCCCCCcc Confidence 999999887655433221 111 111222334444444 No 14 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=1.8e-96 Score=545.52 Aligned_cols=408 Identities=28% Similarity=0.431 Sum_probs=352.1 Q ss_pred CCccchhccccccccccc---------chHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS---------GGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |+||.+.+..+...++.+ .++....++...+.++..|+.++|+++|+|++||++||++||++|++++++.+ T Consensus 7 mg~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:81 7 LGLFGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYMRTP 86 (432) T ss_pred cchhhhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhhhCceeeEEecC Confidence 999988655443322211 12344455666778889999999999999999999999999999999999999 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEee Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVA 151 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 151 (419) +++.++..|++.++|+.+||++||+++||+.++.+++++||||+++.++ .|++.+|||++|+.|++..+.++...|.+. T Consensus 87 ~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~-~g~~~~L~~l~~~~v~v~~~~~g~~~y~~~ 165 (432) T protein:vir:81 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDPKGNTAYRYR 165 (432) T ss_pred CcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEECCCCcEEEEEE Confidence 9988888999999999999999999999999999999999999999987 499999999999999999988876555543 Q ss_pred c----ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHH Q lcl|Aclame:pro 152 G----ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRI 227 (419) Q Consensus 152 ~----~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (419) . ...++.++|+|+++++.|+++|+||+..+...+.++.+++++..++|+||++|++++++++.+ ++++++++ T Consensus 166 ~~~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l----~~e~~~~~ 241 (432) T protein:vir:81 166 RTDGQMIDIPKQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFL----TDDQYDSF 241 (432) T ss_pred ecCceEEEEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCC----CHHHHHHH Confidence 2 235788999999999999999999999999999999999999999999999999999998654 67787777 Q ss_pred HHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc---ccHHHHHHH Q lcl|Aclame:pro 228 TDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF---SNIEHQSLQ 304 (419) Q Consensus 228 ~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~---sn~e~~~~~ 304 (419) ++.| .|..|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|..+.+++ +|.|++.+. T Consensus 242 ~~~~----~~~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~ 317 (432) T protein:vir:81 242 AKKV----SGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLG 317 (432) T ss_pred HHHH----hhhhcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHH Confidence 7665 567789999999999999999999999999999999999999999999999998776554 889999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-e Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD-I 383 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD-~ 383 (419) |+++||.|++.+||++++++|+++.+..+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+|||| . T Consensus 318 f~~~tl~P~~~~ie~~l~~kLl~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~~~~ 397 (432) T protein:vir:81 318 FLTMTLSPWLRRIEQSIALNLLSPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAV 397 (432) T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcce Confidence 999999999999999999999999887788999999999999999999999999999999999999999999999765 5 Q ss_pred eeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 384 YLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 384 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) +++++|++|++..+.... ++++++..++.+.-+| T Consensus 398 ~~~~~~~~pl~~~~~~~~--~~~~~~~~n~~~~~~~ 431 (432) T protein:vir:81 398 LTVQSAMVPLDSIGLQAS--PEPASGLGNQQQDKVS 431 (432) T ss_pred EeecCcccchhhhccCCC--CCCCCCCCCccccccc Confidence 568999999877654322 2222222333333333 No 15 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=1.7e-96 Score=545.59 Aligned_cols=408 Identities=28% Similarity=0.421 Sum_probs=354.5 Q ss_pred CCccchhccccccccccc---------chHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS---------GGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |+|+.+.++.+...++.+ .++....++...+.++..|++++|+++++|++||++||++||++|+++|++.+ T Consensus 7 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~~~~ 86 (432) T protein:vir:97 7 LGLLGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLMMYMRTP 86 (432) T ss_pred CchhhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceEEEEecC Confidence 998877666554433211 12233445666677899999999999999999999999999999999999999 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEee Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVA 151 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~ 151 (419) ++..++..|++.++|+.+||++||+++||+.++.+++++||||+++.++ .|++.+|+|++|+.|++..+.++...|.+. T Consensus 87 ~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~p~~v~v~~~~~g~~~y~~~ 165 (432) T protein:vir:97 87 DGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNTAYRYR 165 (432) T ss_pred CCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEEcCCCcEEEEEE Confidence 9988889999999999999999999999999999999999999999997 499999999999999999988776655543 Q ss_pred c----ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHH Q lcl|Aclame:pro 152 G----ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRI 227 (419) Q Consensus 152 ~----~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (419) . ...++.++|+|+++++.|+++|+||+..+...+.+..+++++..++|+||++|++++++++.+ ++++++++ T Consensus 166 ~~~g~~~~~~~~~iih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l----~~e~~~~~ 241 (432) T protein:vir:97 166 RTDGQMIDIPRQQIWKIMGYSLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFL----TDDQYDSF 241 (432) T ss_pred ecCceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCC----CHHHHHHH Confidence 2 234788999999999999999999999999999999999999999999999999999998654 56777776 Q ss_pred HHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc---ccHHHHHHH Q lcl|Aclame:pro 228 TDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF---SNIEHQSLQ 304 (419) Q Consensus 228 ~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~---sn~e~~~~~ 304 (419) ++.| .+..|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.+++ +|+|++.+. T Consensus 242 ~~~~----~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~ 317 (432) T protein:vir:97 242 SKKV----SGSVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLG 317 (432) T ss_pred HHHH----hhhhcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHH Confidence 6554 677789999999999999999999999999999999999999999999999998776554 889999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIY 384 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~ 384 (419) |+++||.|++.+||++++++|+++.++.+++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||++|||.+ T Consensus 318 f~~~tl~P~~~~ie~~ln~kLl~~~e~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~~ 397 (432) T protein:vir:97 318 FLTMTLSPWLRRIEQSIALNLLTPAERRRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAV 397 (432) T ss_pred HHHHHHHHHHHHHHHHHhhhccCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcce Confidence 99999999999999999999999988778899999999999999999999999999999999999999999999987654 Q ss_pred -eeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 385 -LSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 385 -~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) .++.|++|++..+... .++++.+..++.+.-+| T Consensus 398 ~~~~~~~~pl~~~~~~~--~~~~~~~~~~~~~~~~~ 431 (432) T protein:vir:97 398 LTVQSAMVPLDSIGLQA--SPEPASGLGNQQQDKVS 431 (432) T ss_pred EeecccccchhhhcccC--CCCCCCCCCCccccccc Confidence 5899999988765432 23334444555555555 No 16 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=3.6e-96 Score=543.81 Aligned_cols=409 Identities=26% Similarity=0.426 Sum_probs=356.3 Q ss_pred CCccchhccccc-------c--cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFSRQLLSNLG-------Q--TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |+|+.+++..++ . ..+....++..++|.. .++..++.++|+++++|++||++||++||++|++++++.+ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~--~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 78 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGIS--PSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDE 78 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCC--cCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecC Confidence 998876533211 1 1122234555566543 4567789999999999999999999999999999999998 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------ Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------ 145 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------ 145 (419) ++..++..|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|+.|++..+..+. T Consensus 79 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~ 158 (432) T protein:vir:10 79 YGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTK 158 (432) T ss_pred CceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccce Confidence 88888899999999999999999999999999999999999999999999999999999999999998765421 Q ss_pred EEEEe--ec-ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhH Q lcl|Aclame:pro 146 PMYRV--AG-ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQ 221 (419) Q Consensus 146 ~~~~~--~~-~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~ 221 (419) ..|.+ .+ ...+++++|+|+++ ++.++++|+||+..+..++....+++++..++|+||+.|++++++++.+ ++ T Consensus 159 ~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l----~~ 234 (432) T protein:vir:10 159 MWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL----NE 234 (432) T ss_pred EEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC----CH Confidence 11221 12 23477888999986 5789999999999999999999999999999999999999999997654 67 Q ss_pred HHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHH Q lcl|Aclame:pro 222 ASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQ 301 (419) Q Consensus 222 ~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~ 301 (419) ++.+++++.|++.++|.+|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.++++|.|++ T Consensus 235 e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~ 314 (432) T protein:vir:10 235 DAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQ 314 (432) T ss_pred HHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHH Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 302 SLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG 380 (419) Q Consensus 302 ~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g 380 (419) .+.|+++||.|++.+||++|+++||++.+. .+++++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+|| T Consensus 315 ~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g 394 (432) T protein:vir:10 315 QQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 999999999999999999999999998775 4678999999999999999999999999999999999999999999999 Q ss_pred cceeeeccccccccccccccCC---CCCCccccccchh Q lcl|Aclame:pro 381 GDIYLSPMNMVDASKPQPIPMG---KTEPTKAALDEIG 415 (419) Q Consensus 381 gD~~~~~~n~~~~~~~~~~~~~---~~~~~~~~~~e~~ 415 (419) ||++++|+|++|++..++.... +.++.....+|++ T Consensus 395 gD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 395 GDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred CCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999999999876543321 1222334456666 No 17 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=3.6e-96 Score=543.81 Aligned_cols=409 Identities=26% Similarity=0.426 Sum_probs=356.3 Q ss_pred CCccchhccccc-------c--cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFSRQLLSNLG-------Q--TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |+|+.+++..++ . ..+....++..++|.. .++..++.++|+++++|++||++||++||++|++++++.+ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~--~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 78 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGIS--PSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDE 78 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCC--cCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecC Confidence 998876533211 1 1122234555566543 4567789999999999999999999999999999999998 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------ Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------ 145 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------ 145 (419) ++..++..|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|+.|++..+..+. T Consensus 79 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~ 158 (432) T protein:vir:10 79 YGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTK 158 (432) T ss_pred CceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccce Confidence 88888899999999999999999999999999999999999999999999999999999999999998765421 Q ss_pred EEEEe--ec-ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhH Q lcl|Aclame:pro 146 PMYRV--AG-ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQ 221 (419) Q Consensus 146 ~~~~~--~~-~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~ 221 (419) ..|.+ .+ ...+++++|+|+++ ++.++++|+||+..+..++....+++++..++|+||+.|++++++++.+ ++ T Consensus 159 ~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l----~~ 234 (432) T protein:vir:10 159 MWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL----NE 234 (432) T ss_pred EEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC----CH Confidence 11221 12 23477888999986 5789999999999999999999999999999999999999999997654 67 Q ss_pred HHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHH Q lcl|Aclame:pro 222 ASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQ 301 (419) Q Consensus 222 ~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~ 301 (419) ++.+++++.|++.++|.+|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.++++|.|++ T Consensus 235 e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~ 314 (432) T protein:vir:10 235 DAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQ 314 (432) T ss_pred HHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHH Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 302 SLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG 380 (419) Q Consensus 302 ~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g 380 (419) .+.|+++||.|++.+||++|+++||++.+. .+++++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+|| T Consensus 315 ~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g 394 (432) T protein:vir:10 315 QQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 999999999999999999999999998775 4678999999999999999999999999999999999999999999999 Q ss_pred cceeeeccccccccccccccCC---CCCCccccccchh Q lcl|Aclame:pro 381 GDIYLSPMNMVDASKPQPIPMG---KTEPTKAALDEIG 415 (419) Q Consensus 381 gD~~~~~~n~~~~~~~~~~~~~---~~~~~~~~~~e~~ 415 (419) ||++++|+|++|++..++.... +.++.....+|++ T Consensus 395 gD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 395 GDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred CCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999999999876543321 1222334456666 No 18 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=3.6e-96 Score=543.81 Aligned_cols=409 Identities=26% Similarity=0.426 Sum_probs=356.3 Q ss_pred CCccchhccccc-------c--cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFSRQLLSNLG-------Q--TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |+|+.+++..++ . ..+....++..++|.. .++..++.++|+++++|++||++||++||++|++++++.+ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g~~--~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 78 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGIS--PSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDE 78 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhCCC--cCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecC Confidence 998876533211 1 1122234555566543 4567789999999999999999999999999999999998 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------ Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------ 145 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------ 145 (419) ++..++..|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|+.|++..+..+. T Consensus 79 ~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~ 158 (432) T protein:vir:10 79 YGIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTK 158 (432) T ss_pred CceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccce Confidence 88888899999999999999999999999999999999999999999999999999999999999998765421 Q ss_pred EEEEe--ec-ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhH Q lcl|Aclame:pro 146 PMYRV--AG-ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQ 221 (419) Q Consensus 146 ~~~~~--~~-~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~ 221 (419) ..|.+ .+ ...+++++|+|+++ ++.++++|+||+..+..++....+++++..++|+||+.|++++++++.+ ++ T Consensus 159 ~~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l----~~ 234 (432) T protein:vir:10 159 MWYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDL----NE 234 (432) T ss_pred EEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC----CH Confidence 11221 12 23477888999986 5789999999999999999999999999999999999999999997654 67 Q ss_pred HHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHH Q lcl|Aclame:pro 222 ASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQ 301 (419) Q Consensus 222 ~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~ 301 (419) ++.+++++.|++.++|.+|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.++++|.|++ T Consensus 235 e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~ 314 (432) T protein:vir:10 235 DAKKVFRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQ 314 (432) T ss_pred HHHHHHHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHH Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 302 SLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG 380 (419) Q Consensus 302 ~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g 380 (419) .+.|+++||.|++.+||++|+++||++.+. .+++++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+|| T Consensus 315 ~~~~~~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~g 394 (432) T protein:vir:10 315 QQQFYTDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAG 394 (432) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 999999999999999999999999998775 4678999999999999999999999999999999999999999999999 Q ss_pred cceeeeccccccccccccccCC---CCCCccccccchh Q lcl|Aclame:pro 381 GDIYLSPMNMVDASKPQPIPMG---KTEPTKAALDEIG 415 (419) Q Consensus 381 gD~~~~~~n~~~~~~~~~~~~~---~~~~~~~~~~e~~ 415 (419) ||++++|+|++|++..++.... +.++.....+|++ T Consensus 395 gD~~~~~~n~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 432 (432) T protein:vir:10 395 GDRLLVNGNMLPIDMAGQAYLKGGDTNGEVSKEGNEGN 432 (432) T ss_pred CCeEeecccccchhhccccccCCCCCCCCCCCCCCCCC Confidence 9999999999999876543321 1222334456666 No 19 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=3e-96 Score=544.28 Aligned_cols=395 Identities=24% Similarity=0.354 Sum_probs=350.4 Q ss_pred CCccchhcccccc---cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ---TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPA 77 (419) Q Consensus 1 M~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~ 77 (419) |+||+++++.+.. ....+.+++..++| +..++.++++++++|++||++||++||++|++++++.+++..++ T Consensus 1 MG~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~ 74 (411) T protein:vir:81 1 MGWWSRLTRFFRPRNETVDMTNPLLLQWLG------VDPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERGIVKS 74 (411) T ss_pred CchHHHHHhhccCcccccccchHHHHHHhc------CcccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCceeee Confidence 9999776543333 22333455555554 33567889999999999999999999999999999999998888 Q ss_pred ccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EEEEee Q lcl|Aclame:pro 78 TDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PMYRVA 151 (419) Q Consensus 78 ~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~~~~~ 151 (419) ..|++.++|+.+||++||+++||+.++.+++++||||+++.|+ .|.+.+|||++|+.|++..+..+. ..+.+. T Consensus 75 ~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 153 (411) T protein:vir:81 75 DREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKNAIWYRYN 153 (411) T ss_pred cccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccceEEEEEE Confidence 8999999999999999999999999999999999999999998 599999999999999998876542 122221 Q ss_pred ----c-ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 152 ----G-ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 152 ----~-~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) + ...+++++|+|+++ ++.++++|+||+..+..++.+..+++++..++|+||+.|++++++++.+ ++++.+ T Consensus 154 ~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----~~e~~~ 229 (411) T protein:vir:81 154 DPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDL----NQEARD 229 (411) T ss_pred ecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC----CHHHHH Confidence 1 22468889999985 6789999999999999999999999999999999999999999997654 678999 Q ss_pred HHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQF 305 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~ 305 (419) ++++.|++.+.|.+|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.++++|+|++.+.| T Consensus 230 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f 309 (411) T protein:vir:81 230 RLVKGFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQNLAF 309 (411) T ss_pred HHHHHHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Q lcl|Aclame:pro 306 VIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIY 384 (419) Q Consensus 306 ~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~ 384 (419) +++||.|++.+||++++++||++.+. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++ T Consensus 310 ~~~~l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~ 389 (411) T protein:vir:81 310 YVDTLLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNL 389 (411) T ss_pred HHHHHHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCee Confidence 99999999999999999999998775 56889999999999999999999999999999999999999999999999999 Q ss_pred eeccccccccccccccCCCCCCc Q lcl|Aclame:pro 385 LSPMNMVDASKPQPIPMGKTEPT 407 (419) Q Consensus 385 ~~~~n~~~~~~~~~~~~~~~~~~ 407 (419) ++++|++|++..+... .+++++ T Consensus 390 ~~~~n~~pl~~~~~~~-~kgGd~ 411 (411) T protein:vir:81 390 MANGNYIPLSMLGANY-GKGGDS 411 (411) T ss_pred eeccCccchhhhhhhh-ccCCCC Confidence 9999999998765432 233333 No 20 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=1.2e-95 Score=541.02 Aligned_cols=402 Identities=25% Similarity=0.440 Sum_probs=344.9 Q ss_pred CCccchhccccccc---ccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee- Q lcl|Aclame:pro 1 MFFSRQLLSNLGQT---QPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP- 76 (419) Q Consensus 1 M~f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~- 76 (419) =|||.++++.+... .+...... ..++.....++..++.+.|+++++|++||++||+++|++|+++++..+++... T Consensus 14 ~g~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~~~~~~ 92 (424) T protein:vir:18 14 NGWWARLKSWFVGGRLVTPNQGSQT-GPVSAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQNDNRKK 92 (424) T ss_pred CchHHHHHhhccccccccccchhhc-cccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeccCCceee Confidence 35566655533222 22221211 12223333456778999999999999999999999999999999988776433 Q ss_pred -eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEeec-c Q lcl|Aclame:pro 77 -ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVAG-A 153 (419) Q Consensus 77 -~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~~-~ 153 (419) ...|++.++|+.+||++||+++||+.++.+++++||||++|.|+..|.+.+|||++|+.|++..+.+... .+...+ . T Consensus 93 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~y~~~~~g~~ 172 (424) T protein:vir:18 93 VDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVVYRYQRDSEY 172 (424) T ss_pred eccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEEEEEEeCCeE Confidence 3579999999999999999999999999999999999999999999999999999999999987765433 222222 2 Q ss_pred cccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 154 DPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNA 233 (419) Q Consensus 154 ~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (419) ..+++++|+|+++++.++++|+||+..+...+.++.+++++..++|+||++|+++++++... +++++.+++++.|++ T Consensus 173 ~~~~~~eVihir~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~---l~~e~~~~~~~~~~~ 249 (424) T protein:vir:18 173 ADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKV---LTEQQRSQVEENFKE 249 (424) T ss_pred EEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcC---CCHHHHHHHHHHHHH Confidence 35788999999999999999999999999999999999999999999999999999998542 468899999999998 Q ss_pred HhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc--ccHHHHHHHHHHHHhh Q lcl|Aclame:pro 234 KFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNIEHQSLQFVIYTLL 311 (419) Q Consensus 234 ~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~--sn~e~~~~~~~~~~i~ 311 (419) .+++ .|+|++++|++|++|+++++++.|+||+|.+++++++||++|||||.++|..+++++ +|.|++...|+++||. T Consensus 250 ~~~~-~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~ 328 (424) T protein:vir:18 250 IAGG-PVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQ 328 (424) T ss_pred HhCC-cccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHH Confidence 7765 588999999999999999999999999999999999999999999999998887765 8999999999999999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMV 391 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~ 391 (419) |++.+||++++++||++.+..+++++||++.+++.|.+++++.+++++++|+||+||+|+++|+||+||||++++++|++ T Consensus 329 P~~~~ie~~ln~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~n~~ 408 (424) T protein:vir:18 329 PYISRWENSIQRWLIPSKDVGRLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVAMRQAQYV 408 (424) T ss_pred HHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCcc Confidence 99999999999999998887788999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccCCCCCCccc Q lcl|Aclame:pro 392 DASKPQPIPMGKTEPTKA 409 (419) Q Consensus 392 ~~~~~~~~~~~~~~~~~~ 409 (419) |++..+.... +.++.+ T Consensus 409 ~l~~~~~~~~--~~~n~a 424 (424) T protein:vir:18 409 PITDLGTNKE--PRNNGA 424 (424) T ss_pred chhhhhccCC--ccccCC Confidence 9987665432 111111 No 21 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=1.5e-95 Score=540.40 Aligned_cols=410 Identities=24% Similarity=0.370 Sum_probs=349.0 Q ss_pred CC--ccchhcccc-----------cccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MF--FSRQLLSNL-----------GQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~--f~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) |+ +.+.+.+.. +.....+++++...+.+..+.++..++.++|+++++|++||++||++||++||+++ T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~~ 80 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGVY 80 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 55 222222111 11112233334333444567788899999999999999999999999999999999 Q ss_pred eecCCcc-eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE Q lcl|Aclame:pro 68 ERSGDDR-KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP 146 (419) Q Consensus 68 ~~~~~~~-~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~ 146 (419) ++++++. ..+..|++.++|+.+||++||+++||+.++.+++++||+|++|.++ .|++.+|+|++|+.|++..+.++.. T Consensus 81 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~v~~~~~~~g~~ 159 (434) T protein:vir:43 81 ERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSRVDLECDENGRL 159 (434) T ss_pred EEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEcCCCeE Confidence 9887764 4567899999999999999999999999999999999999999877 6999999999999999999888766 Q ss_pred EEEeec----ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHH Q lcl|Aclame:pro 147 MYRVAG----ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQA 222 (419) Q Consensus 147 ~~~~~~----~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~ 222 (419) .|++.. ...+++++|+|+++++.|+++|+||+..+...+.++.+++++..++|+||++|++++++++.+ +++ T Consensus 160 ~y~~~~~~g~~~~~~~~eVih~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l----~~e 235 (434) T protein:vir:43 160 KYFYTTKKGARREIERTNMLHIPAFTLDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRIL----QPA 235 (434) T ss_pred EEEEEecCceEEEEccccEEEecCcCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCC----CHH Confidence 655432 346888999999999999999999999999999999999999999999999999999998654 678 Q ss_pred HHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcc--cccHHH Q lcl|Aclame:pro 223 SVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERAT--FSNIEH 300 (419) Q Consensus 223 ~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~--~sn~e~ 300 (419) +.+++++.|++ +.|..|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.++ +++.|+ T Consensus 236 ~~~~~r~~~~~-~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~ 314 (434) T protein:vir:43 236 QREEFREYVKS-VSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQ 314 (434) T ss_pred HHHHHHHHHHH-hcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHH Confidence 89999998865 677789999999999999999999999999999999999999999999999999876554 899999 Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 301 QSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG 380 (419) Q Consensus 301 ~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g 380 (419) +...|+++||.|++.+||++++++|+++.+..+++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+|| T Consensus 315 ~~~~f~~~~L~P~~~~ie~~ln~kL~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~g 394 (434) T protein:vir:43 315 QMLAFLTFSISSITNQIQQCVNKRLLTAPERIRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPG 394 (434) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhhhcCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Confidence 99999999999999999999999999988877788999999999999999999999999999999999999999999999 Q ss_pred cceeeeccccccccccccccCCCCC----Cccccccchhc Q lcl|Aclame:pro 381 GDIYLSPMNMVDASKPQPIPMGKTE----PTKAALDEIGR 416 (419) Q Consensus 381 gD~~~~~~n~~~~~~~~~~~~~~~~----~~~~~~~e~~~ 416 (419) ||++++|+|+++++..++.+..+.. .+..+.-|..+ T Consensus 395 gD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 395 GDILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred CCeEeeccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 9999999999998876554332211 11111112222 No 22 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=1.2e-95 Score=541.02 Aligned_cols=402 Identities=25% Similarity=0.434 Sum_probs=343.8 Q ss_pred CCccchhcccccc---cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee- Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ---TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP- 76 (419) Q Consensus 1 M~f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~- 76 (419) =+||.++++.+.. ..+.... ....+......++..++.+.|+++++|++||++||++||++||++++..+++... T Consensus 14 ~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~ 92 (424) T protein:vir:18 14 NGWWARLQSWFVGGRLVTPNQGS-QTGPVSAHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQNDNRKK 92 (424) T ss_pred CchHHHHHhhhcccccccccccc-cccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeecCCceee Confidence 3444454433321 1121111 1111222234456779999999999999999999999999999999988776443 Q ss_pred -eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEE-eec-c Q lcl|Aclame:pro 77 -ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYR-VAG-A 153 (419) Q Consensus 77 -~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~-~~~-~ 153 (419) ...|++.++|+.+||++||+++||+.++.+++++||+|++|.|+..|.+.+|+|++|+.|++..+.+...+.+ ..+ . T Consensus 93 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~~~~~y~~~~~g~~ 172 (424) T protein:vir:18 93 VDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVGKKVVYRYQRDSEY 172 (424) T ss_pred eccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcCCeEEEEEEeCCeE Confidence 3579999999999999999999999999999999999999999999999999999999999987765433222 222 2 Q ss_pred cccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 154 DPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNA 233 (419) Q Consensus 154 ~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (419) ..+++++|+|+++++.++++|+||+..+...+.++.+++++..++|+||++|+++++++.. .+++++.+++++.|++ T Consensus 173 ~~~~~~eIih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~---~l~~e~~~~~~~~~~~ 249 (424) T protein:vir:18 173 ADFSQKEIFHLKGFGFTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEK---VLTEQQRSQVEENFKE 249 (424) T ss_pred EEeccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCc---CCCHHHHHHHHHHHHH Confidence 3578899999999999999999999999999999999999999999999999999999754 2478899999999998 Q ss_pred HhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc--ccHHHHHHHHHHHHhh Q lcl|Aclame:pro 234 KFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNIEHQSLQFVIYTLL 311 (419) Q Consensus 234 ~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~--sn~e~~~~~~~~~~i~ 311 (419) .++| .|+|++++|++|++|++++++++|+||+|.+++++++||++|||||.++|..+++++ +|.|++.+.|+++||. T Consensus 250 ~~~g-~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~~~tl~ 328 (424) T protein:vir:18 250 IAGG-PVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFLQYTLQ 328 (424) T ss_pred HhCC-cccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHHHHHHH Confidence 8766 588999999999999999999999999999999999999999999999998887664 8999999999999999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMV 391 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~ 391 (419) |++.+||++++++||++.+..+++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||++++++|++ T Consensus 329 P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~~~~~~n~~ 408 (424) T protein:vir:18 329 PYISRWENSIQRWLIPAKDVGRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDVAMRQSQYV 408 (424) T ss_pred HHHHHHHHHHHhhcCCccccCCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCcc Confidence 99999999999999999887788999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccCCCCCCccc Q lcl|Aclame:pro 392 DASKPQPIPMGKTEPTKA 409 (419) Q Consensus 392 ~~~~~~~~~~~~~~~~~~ 409 (419) |++..+.... +.++.+ T Consensus 409 ~l~~~~~~~~--p~~~ga 424 (424) T protein:vir:18 409 PITDLGTNKE--PRNNGA 424 (424) T ss_pred chHhhhccCC--CccCCC Confidence 9987665432 221112 No 23 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=3e-95 Score=538.82 Aligned_cols=410 Identities=31% Similarity=0.466 Sum_probs=354.9 Q ss_pred CC--ccchhcc-------cccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MF--FSRQLLS-------NLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~--f~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |- +-|++.+ ..+...+..++++..++++..+.++..++.++|+++|+|++||++||++||++||+++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~~~~~ 80 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFLKWLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLYQTKP 80 (437) T ss_pred CCcchhhhhhhhHHhhhhhcCCcccCCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEEEEcC Confidence 65 3333222 12223333455666778888888999999999999999999999999999999999999887 Q ss_pred Ccc-eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEe Q lcl|Aclame:pro 72 DDR-KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRV 150 (419) Q Consensus 72 ~~~-~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~ 150 (419) ++. ..+..|++.++|+.+||++||+++||+.++.+++++||+|++|.|+. |.+.+|||++|+.|++..+.++...|++ T Consensus 81 ~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-g~~~~L~~l~p~~v~i~~~~~g~~~y~~ 159 (437) T protein:vir:10 81 DGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA-GVLIGLELMLPQRTTVKRLTSGALQYTY 159 (437) T ss_pred CCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCcceEEEECCCCeEEEEE Confidence 764 45678999999999999999999999999999999999999999995 9999999999999999988777655544 Q ss_pred ec----ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHH Q lcl|Aclame:pro 151 AG----ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDR 226 (419) Q Consensus 151 ~~----~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419) .. ...+++++|+|+++++.|+++|+||+..+..++.+..+++++..++|+||++|+++++.++.+ ++++.++ T Consensus 160 ~~~~g~~~~~~~~dIih~r~~~~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----~~e~~~~ 235 (437) T protein:vir:10 160 RNVDGTVSTLAEDDVFHVRGFSLDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQIL----QKEKRAE 235 (437) T ss_pred EecCceEEEEccccEEEecCcCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCC----CHHHHHH Confidence 32 235788999999999999999999999999999999999999999999999999999998654 6789999 Q ss_pred HHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcc--cccHHHHHHH Q lcl|Aclame:pro 227 ITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERAT--FSNIEHQSLQ 304 (419) Q Consensus 227 ~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~--~sn~e~~~~~ 304 (419) +++.|.++++|..|+|+++|+++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.++ ++|.|++.+. T Consensus 236 ~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~ 315 (437) T protein:vir:10 236 IRTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLG 315 (437) T ss_pred HHHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999887765 4899999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCccee Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIY 384 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~ 384 (419) |+++||.|++.+||++++++||++.++..++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||.+ T Consensus 316 f~~~tl~P~~~~ie~~l~~kll~~~e~~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~ 395 (437) T protein:vir:10 316 FLTFTLRPWLTRIEQAARRSLLRPGERDQFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAV 395 (437) T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcce Confidence 99999999999999999999999888777889999999999999999999999999999999999999999999987765 Q ss_pred -eeccccccccccccccCCC----------CCCccccccchh Q lcl|Aclame:pro 385 -LSPMNMVDASKPQPIPMGK----------TEPTKAALDEIG 415 (419) Q Consensus 385 -~~~~n~~~~~~~~~~~~~~----------~~~~~~~~~e~~ 415 (419) +++.|++|++..++....+ .++.++..+|.. T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 437 (437) T protein:vir:10 396 LTVQSALLPIDKLGEHTTATAAQDALKAWLYQEEKTRATQER 437 (437) T ss_pred EeecCcccchhhccCcCCCcchhccccccCCCCCCCCccccC Confidence 5788998877654432111 112222233333 No 24 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=2.4e-94 Score=533.79 Aligned_cols=398 Identities=29% Similarity=0.473 Sum_probs=345.4 Q ss_pred CCccchhccccccccc------------ccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQP------------GSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~ 68 (419) |+||+++++.+..... .+.+.....+|. .....++.+.|+++++|++||++||++||++|+++++ T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~v~~~~al~~~~v~~ci~~ia~~iA~lp~~~~~ 77 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGI---KLNFSVRGKRALKENTVYVCTKIRAESIGKLSLKIYK 77 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhccc---cCCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEe Confidence 9999876554332211 111222233332 2344588999999999999999999999999999998 Q ss_pred ecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee--- Q lcl|Aclame:pro 69 RSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK--- 145 (419) Q Consensus 69 ~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~--- 145 (419) .++. +..|++.++|+.+||++||+++||+.++.+++++||||++|.|+..|++.+|+|++|+.|++..+.++. T Consensus 78 ~~~~----~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~ 153 (422) T protein:vir:13 78 DKEE----YKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSS 153 (422) T ss_pred cCcc----cccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceec Confidence 6443 446899999999999999999999999999999999999999999999999999999999999877652 Q ss_pred ---EEEEee---c-ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCc Q lcl|Aclame:pro 146 ---PMYRVA---G-ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPA 217 (419) Q Consensus 146 ---~~~~~~---~-~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~ 217 (419) ..|.+. + ...+++++|+|++. ++.++++|+||+..+..++.+..+++++..++|+||+.|++++++++.+ T Consensus 154 ~~~~~y~~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l-- 231 (422) T protein:vir:13 154 LSKVWYVVTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDL-- 231 (422) T ss_pred cceEEEEEEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC-- Confidence 222222 1 23466777777775 5789999999999999999999999999999999999999999998654 Q ss_pred hhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccccc Q lcl|Aclame:pro 218 LKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSN 297 (419) Q Consensus 218 ~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn 297 (419) ++++.+++++.|++.+.|.+|+|+++++++|++|++++.++.|+||+|.+++++++||++|||||.++|..++++++| T Consensus 232 --~~e~~~~~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn 309 (422) T protein:vir:13 232 --DEKAKKIFKKEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNN 309 (422) T ss_pred --CHHHHHHHHHHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCccc Confidence 678999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Q lcl|Aclame:pro 298 IEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMP 376 (419) Q Consensus 298 ~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~ 376 (419) ++++...|+++||.|++.+||++|+++||++.+. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+| T Consensus 310 ~e~~~~~f~~~~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~ 389 (422) T protein:vir:13 310 LTEQQKDFYVTTLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLP 389 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCC Confidence 9999999999999999999999999999998875 467899999999999999999999999999999999999999999 Q ss_pred CCCCcceeeeccccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 377 PVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 377 p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) |+||||++++|+|++|++..+..+. ..++++|| T Consensus 390 p~~ggD~~~~~~n~~~l~~~~~~~~-------~~g~~~g~ 422 (422) T protein:vir:13 390 PVEGGDRLLVNGNMIPIEMAGEQYK-------KGGEKGGK 422 (422) T ss_pred CCCCcCeeeeccCccchhhcccccc-------cCCCcCCC Confidence 9999999999999999987764432 22244444 No 25 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=5.9e-93 Score=526.22 Aligned_cols=413 Identities=27% Similarity=0.429 Sum_probs=345.6 Q ss_pred CCccchhcccccccc---cccch----HHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQ---PGSGG----WVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) Q Consensus 1 M~f~~~~~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (419) ||||+++++...... ..... .......++.+.++..|+.++|+++++|++||++||++||++|++++++.+++ T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGS 80 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 999887765543321 11111 11222223356778899999999999999999999999999999999998888 Q ss_pred ceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EE Q lcl|Aclame:pro 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PM 147 (419) Q Consensus 74 ~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~ 147 (419) ...+..|++..+|+.+|| .||+++||+.++.+++++||+|++|+++ .|.+.+|+|++|+.|++....... .. T Consensus 81 ~~~~~~~~l~~~ln~~~n-~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~ 158 (457) T protein:vir:13 81 RKEIVTPEWLDYPNAEPG-GMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) T ss_pred ccccccchHHHhccccCC-CCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEccCceEEEEecCCCccceeEEE Confidence 888888999999987776 7999999999999999999999999776 599999999999999987654321 12 Q ss_pred EEee--cc----cccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhh Q lcl|Aclame:pro 148 YRVA--GA----DPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKD 220 (419) Q Consensus 148 ~~~~--~~----~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~ 220 (419) |.+. +. ..+++++|+|+++++.++ ++|+||+..+...|.+..++.+++.++|+||++|++++++++.+ + T Consensus 159 y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----s 234 (457) T protein:vir:13 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTM----S 234 (457) T ss_pred EEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCC----C Confidence 2221 11 236788999999888776 89999999999999999999999999999999999999998644 7 Q ss_pred HHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc--ccH Q lcl|Aclame:pro 221 QASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNI 298 (419) Q Consensus 221 ~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~--sn~ 298 (419) +++++++++.|++.++|.+|+|++++|++|++|+++++++.|+||+|.+++++++||++|||||.++|..+++++ +|. T Consensus 235 ~e~~~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~ 314 (457) T protein:vir:13 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) T ss_pred HHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchH Confidence 889999999999999999999999999999999999999999999999999999999999999999998887665 889 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV 378 (419) Q Consensus 299 e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~ 378 (419) +++.+.|+++||.|++.+||++|+++|+++.+..+++++||++.+++.|.+++++.+.+++++|+||+||+|+++|++|+ T Consensus 315 eq~~~~f~~~tl~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi 394 (457) T protein:vir:13 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccCceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999887777789999999999999999999999999999999999999999999 Q ss_pred CCc--ceeeeccccccccccccccCCCCC--------------CccccccchhcccC Q lcl|Aclame:pro 379 KGG--DIYLSPMNMVDASKPQPIPMGKTE--------------PTKAALDEIGRILS 419 (419) Q Consensus 379 ~gg--D~~~~~~n~~~~~~~~~~~~~~~~--------------~~~~~~~e~~~~~~ 419 (419) ||| |++++|+|+++++.....+.++.. +.++..++.+..-+ T Consensus 395 ~~g~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~~~~ 451 (457) T protein:vir:13 395 PDGLGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGATEE 451 (457) T ss_pred CCCcccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccCCCC Confidence 987 999999999887643222111000 01111222222222 No 26 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=4.6e-93 Score=526.80 Aligned_cols=413 Identities=27% Similarity=0.429 Sum_probs=337.2 Q ss_pred CCccchhcccccc-ccccc-----chHHHH-hhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ-TQPGS-----GGWVSA-LLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) Q Consensus 1 M~f~~~~~~~~~~-~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (419) |+||.+++..... ..... ..+... +..++.+.++..|+.++|+++++|++||++||++||++|++++++.+.+ T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNLGATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGT 80 (457) T ss_pred CchhhhhhccccccccccccccccccchhhhhhccccccCCceechHHhhccHHHHHHHHHHHHhHhhCceEEEEecCCc Confidence 9988876543222 11111 111111 2223456778899999999999999999999999999999999987665 Q ss_pred ceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EE Q lcl|Aclame:pro 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PM 147 (419) Q Consensus 74 ~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~ 147 (419) +..+ .|+....|..+||++||+++||+.++.+++++||||++|++. .|.+.+|+|++|+.|++....... +. T Consensus 81 ~~~~-~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~ 158 (457) T protein:vir:62 81 RKEI-DTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) T ss_pred cccc-cchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCCccceeEEE Confidence 5554 455545444688899999999999999999999999999665 699999999999999987654321 12 Q ss_pred EEee--c----ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhh Q lcl|Aclame:pro 148 YRVA--G----ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKD 220 (419) Q Consensus 148 ~~~~--~----~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~ 220 (419) |.+. + ...+++++|+|+++++.++ ++|+||+..+...+.+..++++++.++|+||++|+++|++++.+ + T Consensus 159 y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----s 234 (457) T protein:vir:62 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTM----S 234 (457) T ss_pred EEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCC----C Confidence 2221 1 1246778999999887776 89999999999999999999999999999999999999998644 7 Q ss_pred HHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc--ccH Q lcl|Aclame:pro 221 QASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNI 298 (419) Q Consensus 221 ~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~--sn~ 298 (419) +++++++++.|++.++|.+|+|++++|++|++|++++++++|+||+|.+++++++||++|||||.++|..+++++ +|. T Consensus 235 ~e~~~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~ 314 (457) T protein:vir:62 235 EEGLARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGL 314 (457) T ss_pred HHHHHHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchH Confidence 789999999999999999999999999999999999999999999999999999999999999999998887765 889 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Q lcl|Aclame:pro 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV 378 (419) Q Consensus 299 e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~ 378 (419) |++.+.|+++||.|++.+||++|+++|+++.+..+++++||++.+++.|.+++++.+++++++|+||+||+|+++|+||+ T Consensus 315 eq~~~~f~~~~l~P~~~~ie~~ln~~L~~~~~~~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi 394 (457) T protein:vir:62 315 AEQNIAFTMFSLRPWLERIEAGFNRLLFAETADRFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPL 394 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCccccCceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC Confidence 99999999999999999999999999999888777889999999999999999999999999999999999999999999 Q ss_pred CCc--ceeeeccccccccccccccCCCCCCc-----------cccccchhcccC Q lcl|Aclame:pro 379 KGG--DIYLSPMNMVDASKPQPIPMGKTEPT-----------KAALDEIGRILS 419 (419) Q Consensus 379 ~gg--D~~~~~~n~~~~~~~~~~~~~~~~~~-----------~~~~~e~~~~~~ 419 (419) ||| |++++|+|+++.+.....+..+.+.+ +.+++..+.--. T Consensus 395 ~~g~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 448 (457) T protein:vir:62 395 PDGLGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDE 448 (457) T ss_pred CCCCcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCcc Confidence 987 99999999987765433221111100 000000000000 No 27 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=8.8e-93 Score=525.25 Aligned_cols=402 Identities=18% Similarity=0.236 Sum_probs=335.3 Q ss_pred CCccchhcccccccccccc----hHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSG----GWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~ 76 (419) |.|...+++.+........ .++..+ ++....++..++...|+++++|++||++||++||++|+++++.. .. T Consensus 23 ~~~~~~f~~~e~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~iA~lpl~~~~~~----~~ 97 (441) T protein:vir:98 23 LVVVGIFYKNEKRDLQYNEDDLQMMVQTL-PGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG----QI 97 (441) T ss_pred hhccccccccccccccCCCcchHHHHHHh-hcccccCccccchhhhhccHHHHHHHHHHHHhhccCceEEecCC----cc Confidence 3333333222211111111 233333 33334456678999999999999999999999999999998643 24 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec---- Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG---- 152 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---- 152 (419) ...|++.++|+.+||++||+++||+.++.+++++||||++|.|+..|++.+|+|++|+.|++..+.++...+++.. T Consensus 98 ~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~ 177 (441) T protein:vir:98 98 NYSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQRIDSN 177 (441) T ss_pred cccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEEeccC Confidence 4578999999999999999999999999999999999999999999999999999999999999888766555431 Q ss_pred ----ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHH Q lcl|Aclame:pro 153 ----ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT 228 (419) Q Consensus 153 ----~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (419) ...+++++|+|+++++.++++|+||+..+..++.+..+++++..++|+||++|++++++++... ++++.++++ T Consensus 178 ~~~~~~~~~~~dviHir~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~---~~e~~~~~~ 254 (441) T protein:vir:98 178 GNNIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD---NKKARDRAR 254 (441) T ss_pred cceeeEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCC---CHHHHHHHH Confidence 2357889999999999999999999999999999999999999999999999999999986543 568889999 Q ss_pred HHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHH Q lcl|Aclame:pro 229 DGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIY 308 (419) Q Consensus 229 ~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~ 308 (419) +.|++.++|.+|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|.... .++.+++...|. + T Consensus 255 ~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~--~~s~~q~~~~y~-~ 331 (441) T protein:vir:98 255 EEFHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA--NMSITDANLDYL-S 331 (441) T ss_pred HHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC--CccHHHHHHHHH-H Confidence 9999999999999999999999999999999999999999999999999999999999986432 235566665554 6 Q ss_pred HhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc--eeee Q lcl|Aclame:pro 309 TLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD--IYLS 386 (419) Q Consensus 309 ~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD--~~~~ 386 (419) ||.|++.+||++|+++|+++.. +++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+|||| .+++ T Consensus 332 tl~P~~~~ie~~ln~~L~~~~~--~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~ 409 (441) T protein:vir:98 332 TLKPYITCVCAELNFKFNDEYV--NREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRV 409 (441) T ss_pred HHHHHHHHHHHHHHhhcccccc--CceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEee Confidence 9999999999999999987643 56789999999999999999999999999999999999999999999988 5789 Q ss_pred ccccccccccccccCCCCCCc---cccccchh Q lcl|Aclame:pro 387 PMNMVDASKPQPIPMGKTEPT---KAALDEIG 415 (419) Q Consensus 387 ~~n~~~~~~~~~~~~~~~~~~---~~~~~e~~ 415 (419) |+|+++++..+..+.++++.+ ...+++++ T Consensus 410 ~~n~~~~~~~~~~q~~~~~~~~~~~kgGe~ne 441 (441) T protein:vir:98 410 DLNHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred cccccccccccccccccccccccccCCCCCCC Confidence 999999998766554443321 12233444 No 28 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=2.4e-92 Score=522.86 Aligned_cols=401 Identities=17% Similarity=0.216 Sum_probs=333.3 Q ss_pred CCccchhccccccccccc--chHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS--GGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~ 78 (419) |++|++.+.+.. ..+.. ..++ ..+++....++..++...|+++++||+||++||++||++|+++++.. .... T Consensus 26 ~~lf~~~e~R~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~----~~~~ 99 (441) T protein:vir:94 26 VGIFYKNEKRDL-QYNEDDLQMMV-QTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG----QINY 99 (441) T ss_pred cccccccccccc-cCCCcchHHHH-HHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecCc----cccc Confidence 443322221111 11111 1223 23333444456678999999999999999999999999999998643 2345 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec------ Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG------ 152 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------ 152 (419) .|++.++|+.+||++||+++||+.++.+++++||||++|.|+..|++.+|+|++|+.|++..+.++.+.+++.. T Consensus 100 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~ 179 (441) T protein:vir:94 100 SDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGN 179 (441) T ss_pred cchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCc Confidence 78999999999999999999999999999999999999999999999999999999999999887766555431 Q ss_pred --ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 153 --ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG 230 (419) Q Consensus 153 --~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (419) ...+++++|+|+++++.++++|+||+..+..++.+..+++++..++|+||++|++++++++... ++++.+++++. T Consensus 180 ~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~---~~e~~e~~r~~ 256 (441) T protein:vir:94 180 NIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD---NKKARDRAREE 256 (441) T ss_pred eeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCC---CHHHHHHHHHH Confidence 2347889999999999999999999999999999999999999999999999999999986543 56888999999 Q ss_pred HHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHh Q lcl|Aclame:pro 231 WNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) Q Consensus 231 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i 310 (419) |++.++|.+|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|.... + ++.+++... +.+|| T Consensus 257 ~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~s~~q~~~~-~~~tl 333 (441) T protein:vir:94 257 FHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDANLD-YLSTL 333 (441) T ss_pred HHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-C-ccHHHHHHH-HHHHH Confidence 99999999999999999999999999999999999999999999999999999999986432 3 344555554 56799 Q ss_pred hHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce--eeecc Q lcl|Aclame:pro 311 LPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI--YLSPM 388 (419) Q Consensus 311 ~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~--~~~~~ 388 (419) .|++.+||++|+++|+++. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||. +++|+ T Consensus 334 ~P~~~~ie~eln~kl~~~~--~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~ 411 (441) T protein:vir:94 334 KPYITCVCAELNFKFNDEY--VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDL 411 (441) T ss_pred HHHHHHHHHHHhhhccccc--cCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecc Confidence 9999999999999998654 3567899999999999999999999999999999999999999999999884 78999 Q ss_pred ccccccccccccCCCCCCc--c-ccccchh Q lcl|Aclame:pro 389 NMVDASKPQPIPMGKTEPT--K-AALDEIG 415 (419) Q Consensus 389 n~~~~~~~~~~~~~~~~~~--~-~~~~e~~ 415 (419) |++|++..+..+..+++.+ . ..+++++ T Consensus 412 n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 412 NHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred cccccccccccccccccccccccCCCCCCC Confidence 9999998766554443322 1 2233333 No 29 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=2.4e-92 Score=522.86 Aligned_cols=401 Identities=17% Similarity=0.216 Sum_probs=333.3 Q ss_pred CCccchhccccccccccc--chHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS--GGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~ 78 (419) |++|++.+.+.. ..+.. ..++ ..+++....++..++...|+++++||+||++||++||++|+++++.. .... T Consensus 26 ~~lf~~~e~R~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~----~~~~ 99 (441) T protein:vir:79 26 VGIFYKNEKRDL-QYNEDDLQMMV-QTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNG----QINY 99 (441) T ss_pred cccccccccccc-cCCCcchHHHH-HHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecCc----cccc Confidence 443322221111 11111 1223 23333444456678999999999999999999999999999998643 2345 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec------ Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG------ 152 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------ 152 (419) .|++.++|+.+||++||+++||+.++.+++++||||++|.|+..|++.+|+|++|+.|++..+.++.+.+++.. T Consensus 100 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~ 179 (441) T protein:vir:79 100 SDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGN 179 (441) T ss_pred cchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCc Confidence 78999999999999999999999999999999999999999999999999999999999999887766555431 Q ss_pred --ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 153 --ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG 230 (419) Q Consensus 153 --~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (419) ...+++++|+|+++++.++++|+||+..+..++.+..+++++..++|+||++|++++++++... ++++.+++++. T Consensus 180 ~~~~~~~~~dvih~k~~~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~---~~e~~e~~r~~ 256 (441) T protein:vir:79 180 NIERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD---NKKARDRAREE 256 (441) T ss_pred eeEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCC---CHHHHHHHHHH Confidence 2347889999999999999999999999999999999999999999999999999999986543 56888999999 Q ss_pred HHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHh Q lcl|Aclame:pro 231 WNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) Q Consensus 231 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i 310 (419) |++.++|.+|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|.... + ++.+++... +.+|| T Consensus 257 ~~~~~~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~s~~q~~~~-~~~tl 333 (441) T protein:vir:79 257 FHKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDANLD-YLSTL 333 (441) T ss_pred HHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC-C-ccHHHHHHH-HHHHH Confidence 99999999999999999999999999999999999999999999999999999999986432 3 344555554 56799 Q ss_pred hHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce--eeecc Q lcl|Aclame:pro 311 LPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI--YLSPM 388 (419) Q Consensus 311 ~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~--~~~~~ 388 (419) .|++.+||++|+++|+++. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||. +++|+ T Consensus 334 ~P~~~~ie~eln~kl~~~~--~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~ 411 (441) T protein:vir:79 334 KPYITCVCAELNFKFNDEY--VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDL 411 (441) T ss_pred HHHHHHHHHHHhhhccccc--cCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecc Confidence 9999999999999998654 3567899999999999999999999999999999999999999999999884 78999 Q ss_pred ccccccccccccCCCCCCc--c-ccccchh Q lcl|Aclame:pro 389 NMVDASKPQPIPMGKTEPT--K-AALDEIG 415 (419) Q Consensus 389 n~~~~~~~~~~~~~~~~~~--~-~~~~e~~ 415 (419) |++|++..+..+..+++.+ . ..+++++ T Consensus 412 n~~~~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 412 NHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred cccccccccccccccccccccccCCCCCCC Confidence 9999998766554443322 1 2233333 No 30 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=5.2e-92 Score=521.02 Aligned_cols=402 Identities=18% Similarity=0.224 Sum_probs=339.1 Q ss_pred CCccchhcccccccc-cccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeecc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQ-PGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATD 79 (419) Q Consensus 1 M~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~ 79 (419) |+||++..++..... .....++..+++ .....+..++...|+++++||+||++||+++|++||++++..+ .... T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~----~~~~ 75 (416) T protein:vir:45 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPG-FQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQ----INYS 75 (416) T ss_pred CCcccccccccccCCCcchhHHHHHhcc-ccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCcc----cccc Confidence 997765543322211 111233433333 3445577789999999999999999999999999999986432 3457 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec------- Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG------- 152 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------- 152 (419) |++.++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+|++|+.|++..+.++.+.+++.. T Consensus 76 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 155 (416) T protein:vir:45 76 DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNN 155 (416) T ss_pred chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCce Confidence 8999999999999999999999999999999999999999999999999999999999999887766554421 Q ss_pred -ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 153 -ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGW 231 (419) Q Consensus 153 -~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (419) ...+++++|+|+++++.++++|+||+..+.+++.++.+++++..++|+||+.|++++++++... ++++.+++++.| T Consensus 156 ~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~---~~~~~~~~~~~~ 232 (416) T protein:vir:45 156 IERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD---NKKARDRAREEF 232 (416) T ss_pred eEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCC---CHHHHHHHHHHH Confidence 1357789999999999999999999999999999999999999999999999999999986543 567889999999 Q ss_pred HHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhh Q lcl|Aclame:pro 232 NAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLL 311 (419) Q Consensus 232 ~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~ 311 (419) ++++.|..|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|.... + ++.+++.. ++.+||. T Consensus 233 ~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~~~~~~~~-~~~~~l~ 309 (416) T protein:vir:45 233 HKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDANL-DYLSTLK 309 (416) T ss_pred HHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C-ccHHHHHH-HHHHHHH Confidence 9999999999999999999999999999999999999999999999999999999986432 2 34455544 4567999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc--eeeeccc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD--IYLSPMN 389 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD--~~~~~~n 389 (419) |++.+||++++++|+++. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+|||| ++++|+| T Consensus 310 P~~~~ie~~ln~~l~~~~--~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n 387 (416) T protein:vir:45 310 PYITCVCAELNFKFNDEY--VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLN 387 (416) T ss_pred HHHHHHHHHHhhhccccc--cCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccc Confidence 999999999999998754 356889999999999999999999999999999999999999999999987 6889999 Q ss_pred cccccccccccCCCCCCcc---ccccchh Q lcl|Aclame:pro 390 MVDASKPQPIPMGKTEPTK---AALDEIG 415 (419) Q Consensus 390 ~~~~~~~~~~~~~~~~~~~---~~~~e~~ 415 (419) +++++.....+..+++.++ ...++++ T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 388 HVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred ccccccccccCcccccccccccCCCCCCC Confidence 9999988766655544322 2233444 No 31 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=5.2e-92 Score=521.02 Aligned_cols=402 Identities=18% Similarity=0.224 Sum_probs=339.1 Q ss_pred CCccchhcccccccc-cccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeecc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQ-PGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATD 79 (419) Q Consensus 1 M~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~ 79 (419) |+||++..++..... .....++..+++ .....+..++...|+++++||+||++||+++|++||++++..+ .... T Consensus 1 Mg~f~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~----~~~~ 75 (416) T protein:vir:81 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPG-FQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQ----INYS 75 (416) T ss_pred CCcccccccccccCCCcchhHHHHHhcc-ccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCcc----cccc Confidence 997765543322211 111233433333 3445577789999999999999999999999999999986432 3457 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec------- Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG------- 152 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~------- 152 (419) |++.++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+|++|+.|++..+.++.+.+++.. T Consensus 76 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~ 155 (416) T protein:vir:81 76 DRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNN 155 (416) T ss_pred chHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCce Confidence 8999999999999999999999999999999999999999999999999999999999999887766554421 Q ss_pred -ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 153 -ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGW 231 (419) Q Consensus 153 -~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (419) ...+++++|+|+++++.++++|+||+..+.+++.++.+++++..++|+||+.|++++++++... ++++.+++++.| T Consensus 156 ~~~~~~~~evihir~~~~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~---~~~~~~~~~~~~ 232 (416) T protein:vir:81 156 IERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD---NKKARDRAREEF 232 (416) T ss_pred eEEEEccccEEEeccCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCC---CHHHHHHHHHHH Confidence 1357789999999999999999999999999999999999999999999999999999986543 567889999999 Q ss_pred HHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhh Q lcl|Aclame:pro 232 NAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLL 311 (419) Q Consensus 232 ~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~ 311 (419) ++++.|..|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|.... + ++.+++.. ++.+||. T Consensus 233 ~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~~~~~~~~-~~~~~l~ 309 (416) T protein:vir:81 233 HKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDANL-DYLSTLK 309 (416) T ss_pred HHHhcCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C-ccHHHHHH-HHHHHHH Confidence 9999999999999999999999999999999999999999999999999999999986432 2 34455544 4567999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc--eeeeccc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD--IYLSPMN 389 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD--~~~~~~n 389 (419) |++.+||++++++|+++. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+|||| ++++|+| T Consensus 310 P~~~~ie~~ln~~l~~~~--~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n 387 (416) T protein:vir:81 310 PYITCVCAELNFKFNDEY--VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLN 387 (416) T ss_pred HHHHHHHHHHhhhccccc--cCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeeccc Confidence 999999999999998754 356889999999999999999999999999999999999999999999987 6889999 Q ss_pred cccccccccccCCCCCCcc---ccccchh Q lcl|Aclame:pro 390 MVDASKPQPIPMGKTEPTK---AALDEIG 415 (419) Q Consensus 390 ~~~~~~~~~~~~~~~~~~~---~~~~e~~ 415 (419) +++++.....+..+++.++ ...++++ T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 388 HVNIELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred ccccccccccCcccccccccccCCCCCCC Confidence 9999988766655544322 2233444 No 32 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=2.5e-91 Score=517.26 Aligned_cols=409 Identities=18% Similarity=0.248 Sum_probs=338.2 Q ss_pred CCccchhccccccccc---ccchHHHHhhcCCCcc-----cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQP---GSGGWVSALLGSARSE-----AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGD 72 (419) Q Consensus 1 M~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~ 72 (419) |-+-. ....++| ...+|+.+.+++.+.. +...+..+.|+++|+|++||++||++||++||++++++++ T Consensus 1 ~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~ 76 (518) T protein:vir:78 1 MLLAN----GQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGD 76 (518) T ss_pred CcccC----ceeeccchhhhhhhhhhhcccccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCC Confidence 54321 2223333 2346777666654322 1123345668899999999999999999999999999888 Q ss_pred cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce-eEEEEee Q lcl|Aclame:pro 73 DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL-KPMYRVA 151 (419) Q Consensus 73 ~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~-~~~~~~~ 151 (419) +..+.. ++..++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|||++|++|++..+.+. ...|++. T Consensus 77 ~~~~~~-~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~~~ 155 (518) T protein:vir:78 77 TETEEH-DTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQ 155 (518) T ss_pred cccccc-chHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEEEEE Confidence 776664 44456667799999999999999999999999999999999999999999999999999887653 3333332 Q ss_pred c-------ccccccceEEEecCCCCCCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHH Q lcl|Aclame:pro 152 G-------ADPLPQRLVHHVRWMSINGY-TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQAS 223 (419) Q Consensus 152 ~-------~~~~~~~~i~~~~~~~~~~~-~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~ 223 (419) . ...+++++|+|+++++.++. +|+||+..+...+....++++++.++|+||++|+++++.++.+ ++++ T Consensus 156 ~~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~l----s~e~ 231 (518) T protein:vir:78 156 AGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL----SPEA 231 (518) T ss_pred ecCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC----CHHH Confidence 1 12477899999998888875 7999999999999999999999999999999999999998654 6789 Q ss_pred HHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHH Q lcl|Aclame:pro 224 VDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSL 303 (419) Q Consensus 224 ~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~ 303 (419) .+++++.|++.++|.+|+|++++|++|++|+++++++.|+||+|.+++++++||++|||||.++|..++++++|.|++.+ T Consensus 232 ~~~~k~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~ 311 (518) T protein:vir:78 232 QQRLREQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMR 311 (518) T ss_pred HHHHHHHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cc Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GG 381 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--gg 381 (419) .|+++||.|++.+||++++++|+++.+ .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+| || T Consensus 312 ~f~~~tL~P~~~~ie~eln~~L~~~~~-~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~g 390 (518) T protein:vir:78 312 AFYRDTMAIPIARIQSAMDKYVGQYWV-RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKA 390 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-CcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC Confidence 999999999999999999999987654 456899999999999999999999999999999999999999999996 89 Q ss_pred ceeeeccccccccccccccC------CCCCCccccccchhcccC Q lcl|Aclame:pro 382 DIYLSPMNMVDASKPQPIPM------GKTEPTKAALDEIGRILS 419 (419) Q Consensus 382 D~~~~~~n~~~~~~~~~~~~------~~~~~~~~~~~e~~~~~~ 419 (419) |++++++|++|++....... ..++++..+..++++-.. T Consensus 391 D~~~v~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 434 (518) T protein:vir:78 391 DELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPP 434 (518) T ss_pred ceeeecccceecccccccccCCCCCCCCCCCCcccccccccCcc Confidence 99999999998765432211 001111111111111111 No 33 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=1.3e-91 Score=518.77 Aligned_cols=400 Identities=26% Similarity=0.460 Sum_probs=335.9 Q ss_pred CCccchhcccccc-cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeecc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ-TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATD 79 (419) Q Consensus 1 M~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~ 79 (419) |+|+.+++++... .......++... +...+.++..++.+.|+++++|++||++||+++|++||+++++++.+ ++.. T Consensus 1 Mgl~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~--~~~~ 77 (409) T protein:vir:84 1 MSLFTRIFSGPSEERTLTKISGIPSP-AEDWAMHGDRPGANSAMTLGAFYACVTLLADTVASLSIDAYRKKDNV--RIPV 77 (409) T ss_pred CchhhhhhcCCCcccccccccccccc-cchhhccCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCc--cccc Confidence 9988876665432 222111111111 11122345678899999999999999999999999999999976554 4567 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEe-ecCCCceEEEEEecCceeEEEEccce--eEEE--Eeeccc Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFID-RDQDGVIQGLYPLDNEAVTVMKGPDL--KPMY--RVAGAD 154 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~-~~~~G~~~~l~~~~~~~v~~~~~~~~--~~~~--~~~~~~ 154 (419) |++.++|+.+||++||+++||+.++.+++++||+|++|. ++..|.+.+|+|++|+.|++....+. ...+ +..+.+ T Consensus 78 ~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~~~~g~ 157 (409) T protein:vir:84 78 SPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPVYRIDGK 157 (409) T ss_pred chHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEEecCCce Confidence 999999999999999999999999999999999999985 67889999999999999998764432 2222 222345 Q ss_pred ccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNA 233 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (419) .+++++|+|+++++.++ ++|+||+..+...+.+..+++++..++|+||++|+++++.++.+ ++++++++++.|.+ T Consensus 158 ~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l----~~e~~~~~~~~~~~ 233 (409) T protein:vir:84 158 VVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADL----TPDQVKQTQKQWIQ 233 (409) T ss_pred EEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC----CHHHHHHHHHHHHH Confidence 67889999999887776 78999999999999999999999999999999999999997644 67889999999987 Q ss_pred HhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcc--cccHHHHHHHHHHHHhh Q lcl|Aclame:pro 234 KFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERAT--FSNIEHQSLQFVIYTLL 311 (419) Q Consensus 234 ~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~--~sn~e~~~~~~~~~~i~ 311 (419) .+ .|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|..+.++ ++|.|++...|+++||. T Consensus 234 ~~---~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~ 310 (409) T protein:vir:84 234 SH---HNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLL 310 (409) T ss_pred Hh---ccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHH Confidence 66 36789999999999999999999999999999999999999999999999877665 48899999999999999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMV 391 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~ 391 (419) |++..||++|+++|. .+++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++|+|++ T Consensus 311 P~~~~ie~~l~~~L~-----~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~~ 385 (409) T protein:vir:84 311 PWLRCIEQALDTFLP-----RGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNFV 385 (409) T ss_pred HHHHHHHHHHHHhcc-----CCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccc Confidence 999999999999873 356799999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 392 DASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) +++...+.+..+. +.+..+.+++| T Consensus 386 ~~~~~~~~~~~~~-~~~~~~~~gn~ 409 (409) T protein:vir:84 386 PLGYVPPEEPAQE-PQPNSATEGNK 409 (409) T ss_pred ccccCCccccCcC-CCCCCccCCCC Confidence 9987766554322 23333455555 No 34 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=9.4e-91 Score=514.14 Aligned_cols=409 Identities=18% Similarity=0.254 Sum_probs=337.6 Q ss_pred CCccchhcccccccccc---cchHHHHhhcCCCcc-----cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPG---SGGWVSALLGSARSE-----AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGD 72 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~ 72 (419) |-+- .....++|. ..+++...++..... ....+..+.|+++++|++||++||++||++||++++++++ T Consensus 1 ~~~~----~~~~~~~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~ 76 (518) T protein:vir:10 1 MLLA----NGQTLSAPAMAELSPQMQDSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGD 76 (518) T ss_pred Cccc----CceeecCchhhhhhhhhhcccccccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCC Confidence 5431 223333332 345666655543321 1223345668899999999999999999999999999888 Q ss_pred cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce-eEEEEee Q lcl|Aclame:pro 73 DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL-KPMYRVA 151 (419) Q Consensus 73 ~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~-~~~~~~~ 151 (419) +......|++ ++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|+.|++..+.+. .+.|.+. T Consensus 77 ~~~~~~~~~~-~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~y~~~ 155 (518) T protein:vir:10 77 TETEESDTGY-AKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQ 155 (518) T ss_pred CceeccchHH-HHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEEEEEE Confidence 8776655555 5566799999999999999999999999999999999999999999999999999887653 3433332 Q ss_pred c-------ccccccceEEEecCCCCCCc-ccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHH Q lcl|Aclame:pro 152 G-------ADPLPQRLVHHVRWMSINGY-TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQAS 223 (419) Q Consensus 152 ~-------~~~~~~~~i~~~~~~~~~~~-~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~ 223 (419) . ...+++++|+|+++++.++. +|+||+..+...+....++++++.++|+||++|+++++.++.+ ++++ T Consensus 156 ~~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~l----s~e~ 231 (518) T protein:vir:10 156 AGAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRL----SEAA 231 (518) T ss_pred ecCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCC----CHHH Confidence 1 12467899999999888885 8999999999999999999999999999999999999998654 6788 Q ss_pred HHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHH Q lcl|Aclame:pro 224 VDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSL 303 (419) Q Consensus 224 ~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~ 303 (419) .+++++.|++.++|.+|+|++++|++|++|++++++++|+||+|.+++++++||++|||||.++|..+.++++|.|++.+ T Consensus 232 ~~~~k~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~~~ 311 (518) T protein:vir:10 232 QQRLREQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMR 311 (518) T ss_pred HHHHHHHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cc Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GG 381 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--gg 381 (419) .|+++||.|++.+||++++++|+++.+ .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||++ || T Consensus 312 ~f~~~tL~P~l~~ie~~ln~~L~~~~~-~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~g 390 (518) T protein:vir:10 312 AFYRDTMAIPIARIQSAMDKYVGQYWV-RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKA 390 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccc-CCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCC Confidence 999999999999999999999987654 457899999999999999999999999999999999999999999996 89 Q ss_pred ceeeeccccccccccccccCC------CCCCccccccch-----hccc---C Q lcl|Aclame:pro 382 DIYLSPMNMVDASKPQPIPMG------KTEPTKAALDEI-----GRIL---S 419 (419) Q Consensus 382 D~~~~~~n~~~~~~~~~~~~~------~~~~~~~~~~e~-----~~~~---~ 419 (419) |++++++|++|++........ .+.++..+..++ +... + T Consensus 391 D~~~~~~n~~pl~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (518) T protein:vir:10 391 DELYANSALQPLGATPDGAVEGEEAPAPKRPASTPVASLDQSPPTSVPGLSP 442 (518) T ss_pred CeeeecccceecccccccccCCCCCCCCCCCCccccccccccccccCCCCCc Confidence 999999999887644222110 001111111111 1111 1 No 35 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=5.7e-90 Score=509.84 Aligned_cols=404 Identities=21% Similarity=0.258 Sum_probs=337.1 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccC-HHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc-eeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVT-PASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR-KPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~-~~~~ 78 (419) |||+++++......+.....|+........+.+...++ .+.++++|+|++||++||++||++|++++++++++. .++. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg~~~~~~ 80 (423) T protein:vir:81 1 MGFLQKLGLAPSVVATPEPIELVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDGGRERVR 80 (423) T ss_pred CchhHhhccccccccCccccccccccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCCceeeec Confidence 99999986655544444444555544444434343443 444568999999999999999999999999887765 4567 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC--CceEEEEEecCceeEEEEccc--eeEEEEee--- Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD--GVIQGLYPLDNEAVTVMKGPD--LKPMYRVA--- 151 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~--G~~~~l~~~~~~~v~~~~~~~--~~~~~~~~--- 151 (419) .|++.++|+ +||++||+++||+.++.+++++||+|+++.|+.. +.+..|+|+++..+++....+ +...|.+. T Consensus 81 ~~~~~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~~~~~ 159 (423) T protein:vir:81 81 EGHLARVCK-LANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYIIIESG 159 (423) T ss_pred cchHHHHhh-cCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEEEEEec Confidence 788888875 8999999999999999999999999999998753 467789999999888766544 23333221 Q ss_pred ---c-ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC-CchhhHHHHH Q lcl|Aclame:pro 152 ---G-ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDA-PALKDQASVD 225 (419) Q Consensus 152 ---~-~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~-~~~~~~~~~~ 225 (419) + ...+++++|+|++.+..++ ++|+||+..+..++....+++++..++|+||+.|+++|+.+... .+.+++++.+ T Consensus 160 ~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~e~~~ 239 (423) T protein:vir:81 160 DNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDAESRT 239 (423) T ss_pred CCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCHHHHH Confidence 1 2346778899999776665 58999999999999999999999999999999999999987643 3457899999 Q ss_pred HHHHHHHHHhc-cccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHH Q lcl|Aclame:pro 226 RITDGWNAKFG-GSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ 304 (419) Q Consensus 226 ~~~~~~~~~~~-g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~ 304 (419) ++++.|++.+. +..|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|..++++++|.|++.+. T Consensus 240 ~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn~e~~~~~ 319 (423) T protein:vir:81 240 RFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSNVREFRKA 319 (423) T ss_pred HHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHH Confidence 99999999985 67889999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhh--hhhhhhhhhhhhhhccHHHHHHHHHHHHh-CCCcCHHHHHHHhCCCCCCCc Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSER--KQYFIEYNLAGLLRGDQSSRYAAYAVGRQ-WGWLSINDIRRLENMPPVKGG 381 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~--~~~~~~fd~~~~~~~d~~~~~~~~~~~~~-~g~~T~NE~R~~lGl~p~~gg 381 (419) |+++||.|++.+||++|+++|+++.+. .+++++||.+.+++.|.+++++.+++++. +|++|+||+|+++|+||+||| T Consensus 320 f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p~~gG 399 (423) T protein:vir:81 320 LYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPSIDGG 399 (423) T ss_pred HHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCCCCc Confidence 999999999999999999999987653 57789999999999999999999999885 699999999999999999999 Q ss_pred ceeeeccccccccccccccCCCCCCc Q lcl|Aclame:pro 382 DIYLSPMNMVDASKPQPIPMGKTEPT 407 (419) Q Consensus 382 D~~~~~~n~~~~~~~~~~~~~~~~~~ 407 (419) |++++|.|+.+.+..... +++.++ T Consensus 400 D~~~~p~n~~~~~~~~~~--~~~~~t 423 (423) T protein:vir:81 400 DDLARPLNTEFGDSEDAP--GEEVET 423 (423) T ss_pred ceeecccccccCccCCCC--CCCCCC Confidence 999999999875542211 111111 No 36 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=5e-90 Score=510.18 Aligned_cols=398 Identities=20% Similarity=0.325 Sum_probs=331.8 Q ss_pred CCccchhcccccccccccchHHH----Hh--hcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVS----AL--LGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |-|+.+..-..+...+....|+. .+ +......++..++.++|+++|+|++||++||++||++||+++++++. T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~~-- 78 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV-- 78 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccccccccCCccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeecccc-- Confidence 99885522222222222222221 11 12222335566889999999999999999999999999999986543 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-EEEEeec- Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-PMYRVAG- 152 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-~~~~~~~- 152 (419) ..|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|+.|++..+.++. +.|.+.. T Consensus 79 ---~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~ 155 (412) T protein:vir:26 79 ---VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA 155 (412) T ss_pred ---ccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcC Confidence 46899999999999999999999999999999999999999999999999999999999998877654 3333322 Q ss_pred ---ccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHH Q lcl|Aclame:pro 153 ---ADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT 228 (419) Q Consensus 153 ---~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (419) ...+++++|+|++++ +.++++|+||+..+...+.++.++.++. ++.++..++++++.++. ++++++++++ T Consensus 156 ~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~--~~~~~~~~~~i~~~~~~----l~~e~~~~~~ 229 (412) T protein:vir:26 156 TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN----VGKEKRQQVL 229 (412) T ss_pred CceEEEEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCC----CCHHHHHHHH Confidence 234788999999874 7789999999999999999999998884 55566666777776644 4778999999 Q ss_pred HHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHH Q lcl|Aclame:pro 229 DGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIY 308 (419) Q Consensus 229 ~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~ 308 (419) +.|++.+. ++|+++++++|++|+++++++.|+||.|.+++++++||++|||||.++|+.++++++|.|++.+.|+++ T Consensus 230 ~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~ 306 (412) T protein:vir:26 230 EDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQH 306 (412) T ss_pred HHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH Confidence 99998765 467899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Q lcl|Aclame:pro 309 TLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) Q Consensus 309 ~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~ 387 (419) ||.|++.+||++|+++||++.+. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||+++++ T Consensus 307 ~l~P~~~~ie~~ln~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~ 386 (412) T protein:vir:26 307 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLIS 386 (412) T ss_pred HHHHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec Confidence 99999999999999999998875 46789999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccC-CCCCCccccccch Q lcl|Aclame:pro 388 MNMVDASKPQPIPM-GKTEPTKAALDEI 414 (419) Q Consensus 388 ~n~~~~~~~~~~~~-~~~~~~~~~~~e~ 414 (419) +|++|++.+...+. .++++.+. +|+ T Consensus 387 ~n~~~~~~~~~~~~~~~gG~~n~--~e~ 412 (412) T protein:vir:26 387 GDLYPIDTPLELRKSLKGGDKNV--NES 412 (412) T ss_pred ccccccccchhhcccccCCCCCc--CCC Confidence 99999987755542 23333222 333 No 37 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=2.6e-89 Score=506.23 Aligned_cols=393 Identities=18% Similarity=0.166 Sum_probs=332.8 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||+..... .....+++..++++..+. .++..+|+++++|++||++||++||++|+++++.+++ .+..| T Consensus 1 m~~f~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~---~~~~~ 70 (406) T protein:vir:97 1 MSFFQPLGTS----KVSYDDYISSVLAGDVSQ---KYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNGD---IIHDE 70 (406) T ss_pred CccccccCCC----CCCcchHHHHHhcCCCCc---ccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCcc---ccccc Confidence 9998754222 222345677777665443 3556679999999999999999999999988765443 34568 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC-CCceEEEEEecCceeEEEEccceeEEEEeec-----cc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ-DGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG-----AD 154 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~-~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-----~~ 154 (419) ++.++|+.+||++||+++||+.++.+++++||||+++.|+. .|.+.+|+|++|+.|++....++...|.+.. .. T Consensus 71 ~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~~~~~~~ 150 (406) T protein:vir:97 71 DINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDMLTAKQV 150 (406) T ss_pred hHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEecCCceEE Confidence 99999999999999999999999999999999999999985 6899999999999999988877666554431 23 Q ss_pred ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) .+++++|+|+++++.++++|+||+.++..++.++.+++++..++|+||+.|++++..++. +++++.+++++.|++. T Consensus 151 ~~~~~evih~r~~~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~----l~~e~~~~~~~~~~~~ 226 (406) T protein:vir:97 151 KCFAHDVIHWKFFSHDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQ----LSGDARQRARQEFEKM 226 (406) T ss_pred EEccccEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCC----CCHHHHHHHHHHHHHH Confidence 577899999999999999999999999999999999999999999999998887776543 4789999999999999 Q ss_pred hccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) ++| .|+|+++++++|++|++++++++|+|++|.+++++++||++|||||.++|. .+++++.+++.+.|+.+||.|++ T Consensus 227 ~~g-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~--~~~~~~~e~~~~~f~~~~l~P~~ 303 (406) T protein:vir:97 227 REG-SVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGV--NSPNQSVAQLMEDYVTNDLPFYF 303 (406) T ss_pred hcc-cccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCC--CCCcchHHHHHHHHHHHHHHHHH Confidence 887 588999999999999999999999999999999999999999999999985 44678999999999999999999 Q ss_pred HHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--cceeeecccccc Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG--GDIYLSPMNMVD 392 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g--gD~~~~~~n~~~ 392 (419) .+||++++++|+++.+...++++||++. +.+.+++.+.+++++|++|+||+|+++|+||+++ ||++++|+|+++ T Consensus 304 ~~ie~~l~~kll~~~~~~~~~i~fd~~~----~~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~ 379 (406) T protein:vir:97 304 DAITSELGLKTLNDKDRRLYHIEFDTRS----VTGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVF 379 (406) T ss_pred HHHHHHHhhhhcChhhccceeEEEecCc----cchhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccc Confidence 9999999999999887777888998765 4556667778899999999999999999999965 999999999999 Q ss_pred ccccccccC-----CCCCCccccccch Q lcl|Aclame:pro 393 ASKPQPIPM-----GKTEPTKAALDEI 414 (419) Q Consensus 393 ~~~~~~~~~-----~~~~~~~~~~~e~ 414 (419) ++...+.+. .++++.++.+++. T Consensus 380 ~~~~~~~~~~~~~~~~gg~~~~~~~~~ 406 (406) T protein:vir:97 380 LDKKEEYQDKVGIKGKGGEVNAEEDKS 406 (406) T ss_pred hhcccccccccccccCCCCCCCCCCCC Confidence 887644332 2333434433333 No 38 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=2.5e-89 Score=506.33 Aligned_cols=397 Identities=18% Similarity=0.199 Sum_probs=327.1 Q ss_pred CCccchhcccccccccccchHHHHhh--cCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALL--GSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~ 78 (419) |.|+|.+.. .... .|...+. +..++..+. ++..+||++++||+||++||++||++|+++++.+.++. .. T Consensus 1 m~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~g~-~~~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~--~~ 71 (417) T protein:vir:38 1 MKLFRGLAT-EVDP-----HWADHLLDSGVIPSFRGG-YLGISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDEV--ID 71 (417) T ss_pred Ccccccccc-CCCc-----cchhhhcccccccccCCc-eechhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcce--ec Confidence 998764322 2111 1222221 222333333 34467999999999999999999999999998776654 44 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-CceEEEEEecCceeEEEEccceeEEEEeec----- Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-GVIQGLYPLDNEAVTVMKGPDLKPMYRVAG----- 152 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~----- 152 (419) .|++.++|+.+||++||+++||+.++.+++++||||++|.|+.. |.+..|+|++|+.|++.....+.+.|.+.. T Consensus 72 ~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~~~ 151 (417) T protein:vir:38 72 LANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNSSM 151 (417) T ss_pred cchHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEcCCcE Confidence 68999999999999999999999999999999999999999864 779999999999999988776665554432 Q ss_pred ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHH Q lcl|Aclame:pro 153 ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWN 232 (419) Q Consensus 153 ~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (419) ...++.++|+|+++++.|+++|+||+.++.+++.++.++.+++.++|+||++|+++++.++.+ ++++.+++++.|+ T Consensus 152 ~~~~~~~dviH~r~~~~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l----~~e~~~~~~~~~~ 227 (417) T protein:vir:38 152 QKVCGFEDVIHWKFFSYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRL----SAEARQKIREDFE 227 (417) T ss_pred EEEecCcceEEecCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCC----CHHHHHHHHHHHH Confidence 234678899999999999999999999999999999999999999999999999999987654 6788999999999 Q ss_pred HHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhH Q lcl|Aclame:pro 233 AKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLP 312 (419) Q Consensus 233 ~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P 312 (419) +.++|. |+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|. .++++|.+++...|+++||.| T Consensus 228 ~~~~g~-n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~--~~~~s~~e~~~~~~~~~tl~P 304 (417) T protein:vir:38 228 RAQAGA-DAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ--NSPNQSVKQLADDYIRNDLPF 304 (417) T ss_pred HHhccc-ccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC--CCcchhHHHHHHHHHHHHHHH Confidence 999885 89999999999999999999999999999999999999999999999984 567899999999999999999 Q ss_pred HHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc--ceeeecccc Q lcl|Aclame:pro 313 WVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGG--DIYLSPMNM 390 (419) Q Consensus 313 ~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~gg--D~~~~~~n~ 390 (419) ++.+||++|+++||++.++.+++++||++.+.+.+. ..+++++++|++|+||+|+++|+||+||| |++++|+|+ T Consensus 305 ~~~~ie~~l~~~Ll~~~~~~~~~~~fd~~~l~~~~~----~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~ 380 (417) T protein:vir:38 305 YFEPITSEFELKLLDDAQRHQYCIGFDTKSVNGLPI----ADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNT 380 (417) T ss_pred HHHHHHHHHHhhhcChhhcccceEEechhhhhHHHH----HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccc Confidence 999999999999999888777889999887765433 33667899999999999999999999986 889999999 Q ss_pred ccccccccccCC-----CCCC-----ccccccchhcc Q lcl|Aclame:pro 391 VDASKPQPIPMG-----KTEP-----TKAALDEIGRI 417 (419) Q Consensus 391 ~~~~~~~~~~~~-----~~~~-----~~~~~~e~~~~ 417 (419) ++++.....+.. ++++ .+...+++.+. T Consensus 381 ~~~d~~~~~~~~~~~~~kgg~~~~~~~~~~~~~~~~~ 417 (417) T protein:vir:38 381 VFLDQKEAYQAEHAAELKGGDTNAKGNQNGSGTNANS 417 (417) T ss_pred cccccccccccccccccCCCCCCCCCCCcCCCCcCCC Confidence 998865443211 1111 11112222222 No 39 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=7e-89 Score=503.90 Aligned_cols=397 Identities=20% Similarity=0.318 Sum_probs=327.0 Q ss_pred CC---ccchhccccccc-ccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee Q lcl|Aclame:pro 1 MF---FSRQLLSNLGQT-QPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) Q Consensus 1 M~---f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~ 76 (419) |- ++.+.++..... .......+..+.+.. ..+...++.++|+++++|++||++||++||++||+++++.+. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~~---- 75 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWK-NRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV---- 75 (409) T ss_pred CCccchhhhhhhhhhhhhhcccccccccccccc-CccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccc---- Confidence 54 333332221100 000001111222211 224455788899999999999999999999999999986543 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-EEEEeec--- Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-PMYRVAG--- 152 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-~~~~~~~--- 152 (419) ..|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|+.|++..+.++. +.|.+.. T Consensus 76 -~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~g 154 (409) T protein:vir:93 76 -VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG 154 (409) T ss_pred -ccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCc Confidence 36899999999999999999999999999999999999999999999999999999999998876544 3333321 Q ss_pred -ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 153 -ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG 230 (419) Q Consensus 153 -~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (419) ...+++++|+|+++ ++.++++|+||+..+.+.+.++.+++++. ++.++..++++++.+.. .++++++++++. T Consensus 155 ~~~~~~~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~----l~~e~~~~~~~~ 228 (409) T protein:vir:93 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN----VGKEKRQQVLED 228 (409) T ss_pred eEEEEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCceEEecCCC----CCHHHHHHHHHH Confidence 23578889999986 47899999999999999999999998874 55566666777776644 478899999999 Q ss_pred HHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHh Q lcl|Aclame:pro 231 WNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) Q Consensus 231 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i 310 (419) |++.+. ++|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|+.++++++|.|++.+.|+++|| T Consensus 229 ~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l 305 (409) T protein:vir:93 229 FKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTL 305 (409) T ss_pred HHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHH Confidence 998775 56789999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccc Q lcl|Aclame:pro 311 LPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMN 389 (419) Q Consensus 311 ~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n 389 (419) .|++.+||++++++||++.+. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++++| T Consensus 306 ~P~~~~ie~~l~~~Ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n 385 (409) T protein:vir:93 306 LPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) T ss_pred HHHHHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccc Confidence 999999999999999998875 4678999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccC-CCCCCccccccch Q lcl|Aclame:pro 390 MVDASKPQPIPM-GKTEPTKAALDEI 414 (419) Q Consensus 390 ~~~~~~~~~~~~-~~~~~~~~~~~e~ 414 (419) +++++.....+. .++++.+ .+|+ T Consensus 386 ~~~~~~~~~~~~~~~gG~~n--~~e~ 409 (409) T protein:vir:93 386 LYPIDTPLELRKSLKGGDKN--VNES 409 (409) T ss_pred ccccccchhhcccccCCCCC--cCCC Confidence 999987765543 2333222 2344 No 40 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=1.2e-88 Score=502.62 Aligned_cols=397 Identities=20% Similarity=0.318 Sum_probs=326.6 Q ss_pred CCccchhcccc-cccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeecc Q lcl|Aclame:pro 1 MFFSRQLLSNL-GQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATD 79 (419) Q Consensus 1 M~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~ 79 (419) |.++.|+++.. ............++.++ ...+...++.+.|+++|+|++||++||++||++||+++++.+ +.. T Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~-----~~~ 77 (409) T protein:vir:96 4 ENIVTRIKKKLIDNWIDQSASKLYDFSPW-KNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-----VVN 77 (409) T ss_pred ccchhhhhhHHhhhhhccccccccccccc-cCccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeeccc-----ccc Confidence 44555554431 11110010111111111 112344578889999999999999999999999999998654 346 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEeec----cc Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVAG----AD 154 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~~----~~ 154 (419) |++.++|+.+||++||+++||+.++.+++++||||++|.|+..|.+.+|||++|+.|++..+.++.. .|.+.. .. T Consensus 78 ~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~ 157 (409) T protein:vir:96 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKL 157 (409) T ss_pred hhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEE Confidence 8999999999999999999999999999999999999999999999999999999999988766543 333221 23 Q ss_pred ccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNA 233 (419) Q Consensus 155 ~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (419) .+++++|+|+++ ++.++++|+||+..+...+.+..+++++. ++.++..++++++.++. +++++++++++.|++ T Consensus 158 ~~~~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~----l~~e~~~~~~~~~~~ 231 (409) T protein:vir:96 158 IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN----VSTEKRQQVLEDFKQ 231 (409) T ss_pred EEccccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCceeEEecCCC----CCHHHHHHHHHHHHH Confidence 577888999986 57899999999999999999999988774 44445555566666543 478899999999998 Q ss_pred HhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 234 KFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPW 313 (419) Q Consensus 234 ~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~ 313 (419) .+. |+|+++++++|++|+++++++.|+|+.|.+++++++||++|||||.++|..++++++|.|++.+.|+++||.|+ T Consensus 232 ~~~---n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~l~P~ 308 (409) T protein:vir:96 232 YYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPI 308 (409) T ss_pred Hhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHH Confidence 875 56789999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccc Q lcl|Aclame:pro 314 VKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVD 392 (419) Q Consensus 314 ~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~ 392 (419) +.+||++++++||++.+. .+++++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++++|++| T Consensus 309 ~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~~~n~~~ 388 (409) T protein:vir:96 309 VKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYP 388 (409) T ss_pred HHHHHHHHHhhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeeecccccc Confidence 999999999999998875 4678999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccccC-CCCCCccccccch Q lcl|Aclame:pro 393 ASKPQPIPM-GKTEPTKAALDEI 414 (419) Q Consensus 393 ~~~~~~~~~-~~~~~~~~~~~e~ 414 (419) ++.....+. .++++++. +|+ T Consensus 389 ~~~~~~~~~~~~gG~~n~--~e~ 409 (409) T protein:vir:96 389 IDTPLELRKSLKGGDKNV--NES 409 (409) T ss_pred cccchhhcccccCCCCCc--CCC Confidence 987654432 33333322 333 No 41 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=3.4e-88 Score=500.09 Aligned_cols=397 Identities=20% Similarity=0.324 Sum_probs=326.3 Q ss_pred CC---ccchhcccc-cccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee Q lcl|Aclame:pro 1 MF---FSRQLLSNL-GQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) Q Consensus 1 M~---f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~ 76 (419) |. ++.++++.. ......+.....++.++ ...+...++.+.|+++|+|++||++||++||++||+++++.+. T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~---- 75 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPW-KNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV---- 75 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccccccccc-cCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccc---- Confidence 65 112222210 00000000011111111 1223455788999999999999999999999999999986543 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEeec--- Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVAG--- 152 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~~--- 152 (419) ..|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|+.|++..+.++.. .|.+.. T Consensus 76 -~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g 154 (409) T protein:vir:94 76 -VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG 154 (409) T ss_pred -cchhHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCc Confidence 458999999999999999999999999999999999999999999999999999999999988766543 333321 Q ss_pred -ccccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 153 -ADPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG 230 (419) Q Consensus 153 -~~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (419) ...+++++|+|+++ ++.++++|+||+..+.+.+.+..++.++. ++.++..++++++.+.. .++++.+++++. T Consensus 155 ~~~~~~~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~----l~~e~~~~~~~~ 228 (409) T protein:vir:94 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN--LTEMQKPDSFMLKYGSN----VGKEKRQQVLED 228 (409) T ss_pred eEEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHH--HHhcCCCCeeEEecCCC----CCHHHHHHHHHH Confidence 23477889999986 47899999999999999999999998875 55555556677776544 478899999999 Q ss_pred HHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHh Q lcl|Aclame:pro 231 WNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) Q Consensus 231 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i 310 (419) |++.+. ++|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|+.++++++|.|++.+.|+++|| T Consensus 229 ~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l 305 (409) T protein:vir:94 229 FKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTL 305 (409) T ss_pred HHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHH Confidence 998875 56789999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccc Q lcl|Aclame:pro 311 LPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMN 389 (419) Q Consensus 311 ~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n 389 (419) .|++.+||++++++||++.+. .+++++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++++| T Consensus 306 ~P~~~~ie~~ln~~Ll~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n 385 (409) T protein:vir:94 306 LPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) T ss_pred HHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeeccc Confidence 999999999999999998775 4678999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccC-CCCCCccccccch Q lcl|Aclame:pro 390 MVDASKPQPIPM-GKTEPTKAALDEI 414 (419) Q Consensus 390 ~~~~~~~~~~~~-~~~~~~~~~~~e~ 414 (419) ++|++.+...+. .++++.+ .+|+ T Consensus 386 ~~~~~~~~~~~~~~kGG~~n--~~e~ 409 (409) T protein:vir:94 386 LYPIDTPLELRKSLKGGDKN--VNES 409 (409) T ss_pred ccccccchhhcccccCCCCC--cCCC Confidence 999988765543 3333332 2444 No 42 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=6.9e-88 Score=498.43 Aligned_cols=400 Identities=16% Similarity=0.136 Sum_probs=348.7 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||.++++.+........+....++..+...+...++...++++|+|++||++||+++|++||++++.++++... ..| T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~-~~~ 79 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRADTGYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGDIR-IRN 79 (406) T ss_pred CcchhhhccccccccccccchhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCccee-ecc Confidence 9999888776655555555556666666666777778899999999999999999999999999999988877544 578 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCe--eEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeeccccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNS--YSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQ 158 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~--~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 158 (419) ++.++|+.+||++||+++||+.++.+++++|++ |+++.|+..|.+.+|||++|++|++..+.+++.. .+ +...+++ T Consensus 80 ~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~~~-~~-~~~~~~~ 157 (406) T protein:vir:95 80 ELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGYQV-LY-GGQTFNY 157 (406) T ss_pred hHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeEEE-Ee-ccEEEch Confidence 999999999999999999999999999999765 5567788899999999999999999988876543 33 3345777 Q ss_pred ceEEEecC--CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 159 RLVHHVRW--MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFG 236 (419) Q Consensus 159 ~~i~~~~~--~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (419) ++|+|+++ ++.++++|.||+..+..++.+..++.++..++|+||+.|+++++.++.+ ++++.++++++|.+.+. T Consensus 158 ~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l----~~e~~~~~~~~~~~~~~ 233 (406) T protein:vir:95 158 DEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAAT----AELSSEEGRNAVFKKYL 233 (406) T ss_pred hHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC----CHHHHHHHHHHHHHHhc Confidence 88888874 5678899999999999999999999999999999999999999998654 67889999999999999 Q ss_pred cccccCcceecCC-CceeeecC-cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 237 GSGNAKKVALLQE-GMKFKPLS-MTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 237 g~~n~g~~~vl~~-g~~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) |..|+|+++++.. |.+++++. ++++|+|+.|.+++++++||++|||||.++|.. ++.+++..+|+++||.|++ T Consensus 234 g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-----~~~~~~~~~~~~~~l~P~~ 308 (406) T protein:vir:95 234 QATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIG-----EFNRDEYNNFINSTILPIA 308 (406) T ss_pred cccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-----CchHHHHHHHHHHHHHHHH Confidence 9999999988764 56777764 689999999999999999999999999999743 3458889999999999999 Q ss_pred HHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccc Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDAS 394 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~ 394 (419) .+||++|+++||++. +++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++|+|+++++ T Consensus 309 ~~ie~~l~~~l~~~~---~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~~~~~ 385 (406) T protein:vir:95 309 KGIEQELTRKLLISP---DLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENYIPLD 385 (406) T ss_pred HHHHHHHHHhcCCCC---CcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCccchh Confidence 999999999999764 35799999999999999999999999999999999999999999999999999999999999 Q ss_pred ccccccCCCCCCccccccchh Q lcl|Aclame:pro 395 KPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 395 ~~~~~~~~~~~~~~~~~~e~~ 415 (419) .....+..++++.+..+++.+ T Consensus 386 ~~~~~~~~k~g~~~~~~~~~~ 406 (406) T protein:vir:95 386 KIGDQSKLKGGDNSGADGQTD 406 (406) T ss_pred hcccccccCCCCCCCCCCCCC Confidence 887777666666665555555 No 43 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=3e-87 Score=494.93 Aligned_cols=400 Identities=16% Similarity=0.162 Sum_probs=328.8 Q ss_pred CC-ccchhcc-cccccccccchHHHHhhcCCC---cccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcce Q lcl|Aclame:pro 1 MF-FSRQLLS-NLGQTQPGSGGWVSALLGSAR---SEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRK 75 (419) Q Consensus 1 M~-f~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~ 75 (419) |+ +..++.+ ......+....|+. .+|... +.++..++.+.|+++|+|++||++||+++|++||++++..+++.. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g~~ 79 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIK-YIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDTKAY 79 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHH-hhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCCccc Confidence 88 4444433 34444444555654 444322 235677889999999999999999999999999999998887643 Q ss_pred e---------------------------eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC----CCc Q lcl|Aclame:pro 76 P---------------------------ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ----DGV 124 (419) Q Consensus 76 ~---------------------------~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~----~G~ 124 (419) + ...+++..+|+.+||++||+++||+.++.+++++||||++|.|+. .|. T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~G~ 159 (460) T protein:vir:10 80 QQLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINAGV 159 (460) T ss_pred hhhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccCce Confidence 2 234556677888999999999999999999999999999999964 478 Q ss_pred eEEEEEecCceeEEEEccceeEEEEe----------ec-ccccccceEEEecCCCC------CCcccccHHHHHHHHHHH Q lcl|Aclame:pro 125 IQGLYPLDNEAVTVMKGPDLKPMYRV----------AG-ADPLPQRLVHHVRWMSI------NGYTGLSPVLLHANAIGH 187 (419) Q Consensus 125 ~~~l~~~~~~~v~~~~~~~~~~~~~~----------~~-~~~~~~~~i~~~~~~~~------~~~~G~s~~~~~~~~i~~ 187 (419) +.+|||++|+.|++..+.++...++. .+ ...+++++|+|+++++. ++++|+||+..+...+.+ T Consensus 160 ~~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~ 239 (460) T protein:vir:10 160 PSQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNINS 239 (460) T ss_pred eEEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHHHH Confidence 99999999999999988775432221 11 24577889999987644 368999999999999999 Q ss_pred HHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHH Q lcl|Aclame:pro 188 AQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALID 267 (419) Q Consensus 188 ~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e 267 (419) ..+++++..++|+||+.|+++++.++. +++++.+++++.|++.++|.+|+|+++++++|++|+++++++.|+||+| T Consensus 240 ~~~~~~~~~~~f~ng~~~~~i~~~~~~----l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e 315 (460) T protein:vir:10 240 QNSTIDNNVKTMQNGGVFGFIHGGSTG----LTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFD 315 (460) T ss_pred HHHHHHHHHHHHhcCCCcceeeecCCC----CCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHH Confidence 999999999999999999999887654 3788999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHhcCCHHHcccccC--cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhh-hhhhhhhhhhh- Q lcl|Aclame:pro 268 ALRLSALDIARIYKIPAHMVNELER--ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERK-QYFIEYNLAGL- 343 (419) Q Consensus 268 ~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~-~~~~~fd~~~~- 343 (419) .+++++++||++|||||.++|..++ ++++|.|++.+.|+++||.|++.+||++|+++|+++.+.. +++++||++.+ T Consensus 316 ~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~ 395 (460) T protein:vir:10 316 YLKYDQKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELP 395 (460) T ss_pred HHHHHHHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhh Confidence 9999999999999999999998764 4689999999999999999999999999999999877653 67788988876 Q ss_pred -hhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CCcceeeeccccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 344 -LRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV--KGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 344 -~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~--~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) ++.|.++ ...++++|++|+||+|+++|+||+ ||||++++|+|+++++...+......+ ++++ T Consensus 396 ~l~~d~~~----~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~~~~~~~------nq~~ 460 (460) T protein:vir:10 396 EMQTDMVA----MASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSNKVRIDDVSNNLIDSAF------NQNQ 460 (460) T ss_pred hHHHHHHH----HHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecccccchhhcccccCCCcc------cCCC Confidence 3334443 445778999999999999999998 589999999999999876543211111 2222 No 44 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=3.5e-86 Score=489.07 Aligned_cols=396 Identities=15% Similarity=0.151 Sum_probs=328.7 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCH-HHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeecc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTP-ASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATD 79 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~ 79 (419) |+||+.++++..........+ +..........++. ..+..+|+|++||++||++||++|++++++.+++... .. T Consensus 1 Mg~~~~f~~k~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~g~~~-~~ 75 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPTNAISW----FLTQEAYDTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHLMQNTDNGDIR-IK 75 (403) T ss_pred Ccccccccccccccccchhhh----hcccccccccccchhhhhhhhHHHHHHHHHHHHhhhhCceEEEEecCCceee-cC Confidence 999887665443222222122 11111122222222 3345789999999999999999999999988777554 57 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHc--CCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeecccccc Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLR--GNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLP 157 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~--G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 157 (419) |++.++|+.+||++||+++||+.++.++++. ||||+++.++..|++.+|||++|+.|++..+.+++..++ .+ ..++ T Consensus 76 ~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~~~y-~~-~~~~ 153 (403) T protein:vir:80 76 NELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQIWY-QG-KAYN 153 (403) T ss_pred ChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceEEEE-ee-cccc Confidence 8999999999999999999999999999995 789999999999999999999999999998888765443 33 3456 Q ss_pred cceEEEec--CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 158 QRLVHHVR--WMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 158 ~~~i~~~~--~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) +++|+|++ +++.++++|+||+..+..++....+++++..++|+||++|+++++.++.. ++++.++.+++|.+.+ T Consensus 154 ~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~----~~~~~~~~~~~~~~~~ 229 (403) T protein:vir:80 154 YDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAAT----AELSSEEGRNAVFKKY 229 (403) T ss_pred hhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC----ChHHHHHHHHHHHHHH Confidence 67787777 46778899999999999999999999999999999999999999998654 5677788889999999 Q ss_pred ccccccCcceecCCC-ceeeecC-cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHH Q lcl|Aclame:pro 236 GGSGNAKKVALLQEG-MKFKPLS-MTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPW 313 (419) Q Consensus 236 ~g~~n~g~~~vl~~g-~~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~ 313 (419) .+..|+|++++++++ .++.++. ++++|+|++|.+++++++||++|||||.++|.. ++.++...+|+.+||.|+ T Consensus 230 ~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-----~~~~~~~~~f~~~~l~P~ 304 (403) T protein:vir:80 230 LEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVG-----KYDKDEYNNFINSTILPI 304 (403) T ss_pred hhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCC-----CccHHHHHHHHHHHHHHH Confidence 999999999998765 4455544 578999999999999999999999999999753 233556678999999999 Q ss_pred HHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccc Q lcl|Aclame:pro 314 VKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDA 393 (419) Q Consensus 314 ~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~ 393 (419) +.+||++|+++||++.+ ++++||.+.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++++|++|+ T Consensus 305 ~~~ie~~l~~kll~~~~---~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n~~pl 381 (403) T protein:vir:80 305 AKGIEQELTRKLLISPD---LYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILENYIPL 381 (403) T ss_pred HHHHHHHHHHhccCCCC---cEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeecccccch Confidence 99999999999998643 578999999999999999999999999999999999999999999999999999999999 Q ss_pred cccccccCCCCCCccccccchh Q lcl|Aclame:pro 394 SKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 394 ~~~~~~~~~~~~~~~~~~~e~~ 415 (419) +..+..+..++++.++.+++++ T Consensus 382 ~~~~~~~~~k~ge~~~~~~~~~ 403 (403) T protein:vir:80 382 DKIGDQNKLKGGEKGGADGQTD 403 (403) T ss_pred hhccchhhccCCCCCCCCCCCC Confidence 8877766666666666666666 No 45 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=4.2e-86 Score=488.67 Aligned_cols=384 Identities=16% Similarity=0.165 Sum_probs=325.4 Q ss_pred CCccchhccccccccccc------------chHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS------------GGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~ 68 (419) |.||++.++......... ..|+..+.+. ....++++++|++||++||++||++||++++ T Consensus 13 m~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~ 83 (413) T protein:vir:96 13 LKFFNNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELISD---------GYTKLSDSPEVRMAVDCIADLVSNMTIQLMQ 83 (413) T ss_pred CCccccCCCcchhhhhhccccccccccccchhhHhhhccc---------hhHHHhhchHHHHHHHHHHHhhccCceEEEE Confidence 888876543322111100 0111111110 1234678999999999999999999999999 Q ss_pred ecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCC-ceEEEEEecCceeEEEEccceeEE Q lcl|Aclame:pro 69 RSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDG-VIQGLYPLDNEAVTVMKGPDLKPM 147 (419) Q Consensus 69 ~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G-~~~~l~~~~~~~v~~~~~~~~~~~ 147 (419) +.+++... ..|++.++|+.+||++||+++||+.++.+++++|+||+++.|+..| .+.+|||++|++|++..+.+.... T Consensus 84 ~~~~~~~~-~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~~~~y 162 (413) T protein:vir:96 84 NGETGDKR-IKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDDDLDY 162 (413) T ss_pred ecCCCccc-cccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcCCeEEE Confidence 88876654 4689999999999999999999999999999999999999999877 578999999999999888766544 Q ss_pred EEeecccccccceEEEecC--CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 148 YRVAGADPLPQRLVHHVRW--MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 148 ~~~~~~~~~~~~~i~~~~~--~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) .+..+...+++++|+|++. ++.++++|.||+.++...+.+..+++++..++|+||+.|++++++++.+ ++++.+ T Consensus 163 ~~~~~~~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l----~~e~~~ 238 (413) T protein:vir:96 163 SITFDNKEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDS----DELSDE 238 (413) T ss_pred EEeecCcEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC----CHHHHH Confidence 4444455677788888874 3557899999999999999999999999999999999999999997644 678899 Q ss_pred HHHHHHHHHhccccccCcceecCCCc-eeeec-CcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALLQEGM-KFKPL-SMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSL 303 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~~g~-~~~~l-~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~ 303 (419) +++++|++.+.|.+|+|+++++++|. ++.++ .++++|+|++|.+++++++||++|||||.++|.. ++.+++.. T Consensus 239 ~~~~~~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~-----~~~~~~~~ 313 (413) T protein:vir:96 239 EGRENFEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG-----TYNKDEFN 313 (413) T ss_pred HHHHHHHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-----cchHHHHH Confidence 99999999999999999999997664 55665 4689999999999999999999999999999753 34588889 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI 383 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~ 383 (419) +|+++||.|++..||++|+++|+++ +.+++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||+ T Consensus 314 ~~~~~~l~P~~~~ie~~ln~~ll~~----~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~ 389 (413) T protein:vir:96 314 NFINTKIMSIAQVIQQTYNKLIVEE----DMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDD 389 (413) T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC----CcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce Confidence 9999999999999999999999874 567899999999999999999999999999999999999999999999999 Q ss_pred eeeccccccccccccccCCCCCCc Q lcl|Aclame:pro 384 YLSPMNMVDASKPQPIPMGKTEPT 407 (419) Q Consensus 384 ~~~~~n~~~~~~~~~~~~~~~~~~ 407 (419) +++|+|+++++.....+..+++++ T Consensus 390 ~~~~~n~~~~~~~~~~~~~~~~dt 413 (413) T protein:vir:96 390 LLVLENYLQQKDLVNQKKLIQDET 413 (413) T ss_pred eeecccccchhhcccccCCCCCCC Confidence 999999999998877776666655 No 46 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=1.4e-84 Score=480.35 Aligned_cols=405 Identities=18% Similarity=0.127 Sum_probs=330.2 Q ss_pred CCccchhcccccccc-----------------------cccchHHHHhhcCCC-c---ccccccCHHHHhccHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQ-----------------------PGSGGWVSALLGSAR-S---EAGQVVTPASALSLTVLQNCVT 53 (419) Q Consensus 1 M~f~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~v~~~i~ 53 (419) |+|++++++...... ..+.+++..+++++. . .++..++.+.|+++|+|++||+ T Consensus 1 M~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~~i~ 80 (466) T protein:vir:81 1 MRLIDRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFACML 80 (466) T ss_pred CchhHHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHHHHH Confidence 999988877654221 111233444433322 2 2567789999999999999999 Q ss_pred HHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC--------Cce Q lcl|Aclame:pro 54 LLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD--------GVI 125 (419) Q Consensus 54 ~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~--------G~~ 125 (419) +||++||++||+++++.+.++.++..|++.. |+.+||++||+++||+.++.+++++||||++|.|+.. |.+ T Consensus 81 ~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~-L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g~~ 159 (466) T protein:vir:81 81 VRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQ-ILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVDVV 159 (466) T ss_pred HHHHhhccCceEEEEecCCceeeccccHHHH-HhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCcce Confidence 9999999999999998776666666666655 5569999999999999999999999999999999765 458 Q ss_pred EEEEEecCceeEEEEccceeE--EEE--eec------ccccccceEEEecCC--CCCCcccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 126 QGLYPLDNEAVTVMKGPDLKP--MYR--VAG------ADPLPQRLVHHVRWM--SINGYTGLSPVLLHANAIGHAQAIQQ 193 (419) Q Consensus 126 ~~l~~~~~~~v~~~~~~~~~~--~~~--~~~------~~~~~~~~i~~~~~~--~~~~~~G~s~~~~~~~~i~~~~~~~~ 193 (419) .+++|++|+.|++..+.++.. .|. ..+ ...++.++|+|++++ +.++++|+||+..+.+++.+..++++ T Consensus 160 ~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~~~ 239 (466) T protein:vir:81 160 VEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAMSK 239 (466) T ss_pred eEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHHHH Confidence 999999999999988776532 222 222 234788899999864 68999999999999999999999999 Q ss_pred HHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHH Q lcl|Aclame:pro 194 YAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSA 273 (419) Q Consensus 194 ~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~ 273 (419) +..++|+||+.|+++++.++.+ ++++++++++.|++.++|.+|+|+++++++|++|++++++++|+||+|.+++++ T Consensus 240 ~~~~~f~ng~~p~gil~~~~~l----~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~ 315 (466) T protein:vir:81 240 HQAKFFDNGATVNLVIKHNPMA----DPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGE 315 (466) T ss_pred HHHHHHhcCCCcceEEecCCCC----CHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHH Confidence 9999999999999999988654 678999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHhcCCHHHccccc---CcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHH Q lcl|Aclame:pro 274 LDIARIYKIPAHMVNELE---RATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSS 350 (419) Q Consensus 274 ~~Ia~~fgvpp~~~g~~~---~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~ 350 (419) ++||++|||||.++|..+ .++|+|+|++.+.|+++||.|++.+||++|+++|+++.++..++++||.+.+++.|.++ T Consensus 316 ~~Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~~~~~~f~~~~llr~d~~~ 395 (466) T protein:vir:81 316 TRIAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDVRLWYDADDVPFLREDEKD 395 (466) T ss_pred HHHHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCcceEEEecchhhhccCHHH Confidence 999999999999999753 46899999999999999999999999999999999887777788999999999999998 Q ss_pred HHHH-------HHHHHhCCCcCHHHHHHHhCCCCCCCcceeee-cccccccccccc---ccCCCCCCccccccchhc Q lcl|Aclame:pro 351 RYAA-------YAVGRQWGWLSINDIRRLENMPPVKGGDIYLS-PMNMVDASKPQP---IPMGKTEPTKAALDEIGR 416 (419) Q Consensus 351 ~~~~-------~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~-~~n~~~~~~~~~---~~~~~~~~~~~~~~e~~~ 416 (419) ++++ +..++++|+ |+||+|+ ++++||.++. +.++.+++...+ .....+++.+...+++|. T Consensus 396 r~~~~~~~~~~~~~~~~~g~-t~nE~r~-----~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~ngn 466 (466) T protein:vir:81 396 AADIQKVRAETINTLITAGY-EPESVVA-----AVNSGDLRLLKHTGLTSVQLLPPGVSASASSDTPTSGGADDNGN 466 (466) T ss_pred HHHHHHHHHHHHHHHHHcCC-Chhhccc-----cccCCccccccCCCcchhhhcccccccccCCCCcccCCCCcCCC Confidence 8876 556788885 9999995 4567776544 345554443221 112222223344455555 No 47 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=1e-84 Score=480.99 Aligned_cols=390 Identities=13% Similarity=0.172 Sum_probs=328.1 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |||+.++++.. ......+.|+.+.++...+.++..++.++++++++|++||++||++||++||++++++++ ++..| T Consensus 1 MGl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g~---~~~~~ 76 (394) T protein:vir:62 1 MGLRDRFSNYL-FKKAEKRGYLDNVLGKSIRYSGVYVTDSNILQSSDVYELLQDISNQMVLADIVVEDEFGN---EIKDD 76 (394) T ss_pred Cchhhhhhhhc-cCCCCchhhhhhhhhcccccCccccChhhhhccHHHHHHHHHHHHhhcccceEEEcCCCc---ccchh Confidence 99998876544 344445668899999988889988999999999999999999999999999999975442 44567 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeecccccccce Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQRL 160 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (419) ++..|| .+||++||+++||+.++.+++++||+|+++.++..+.+ ..+.+..+.++.+.+... ...+++++ T Consensus 77 ~~~~Ll-~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~e 146 (394) T protein:vir:62 77 IALQIL-RNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIHLA--------SNVFTELDDNLVEHFNIG-GHEIPPCM 146 (394) T ss_pred hHHHHh-ccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceeecc--------ccceEEECCceEEEEeeC-CEEechhh Confidence 765555 69999999999999999999999999999976544432 345555666666555443 45678889 Q ss_pred EEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 161 VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGN 240 (419) Q Consensus 161 i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n 240 (419) |+|+++++.|+++|+||+..+..++....+++++..++|+||+.|++++++++.... ++++.+++++.|.+.++|..| T Consensus 147 iih~r~~~~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~--~~~~~~~~~~~~~~~~~g~~n 224 (394) T protein:vir:62 147 IRHVKNIGADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINP--QNGAQSKLINAILDQLESIDE 224 (394) T ss_pred eEEecCcCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCc--CHHHHHHHHHHHHHHhccccc Confidence 999999999999999999999999999999999999999999999999999876543 567789999999999999999 Q ss_pred cCcceecCCCc--eeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHH Q lcl|Aclame:pro 241 AKKVALLQEGM--KFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHE 318 (419) Q Consensus 241 ~g~~~vl~~g~--~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~ 318 (419) +|+++|++.|. ++.+++.++.|+|++|.+++++++||++|||||.++|.. +++|.|++.+.|+++||.|++.+|| T Consensus 225 ~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~---~~sn~e~~~~~~~~~~l~P~~~~ie 301 (394) T protein:vir:62 225 ARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTEL---IKEDIEKAMMYIHNKAVRPIMKNFE 301 (394) T ss_pred cCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCC---CCcCHHHHHHHHHHHHHHHHHHHHH Confidence 99999998766 666889999999999999999999999999999999854 5689999999999999999999999 Q ss_pred HHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CCcceeeecccccccccc Q lcl|Aclame:pro 319 QAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV--KGGDIYLSPMNMVDASKP 396 (419) Q Consensus 319 ~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~--~ggD~~~~~~n~~~~~~~ 396 (419) ++|+++||++.++.+++++||...+... .++++.+.+++++|++|+||+|+++|+||+ +|||++++++|+++++.. T Consensus 302 ~~l~~kll~~~~~~~~~~~fd~~~~~~~--~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~~~~~~ 379 (394) T protein:vir:62 302 DHLSLLFYAQNSGKRIKFKINILDFVTY--SNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKESQAIYISNDVTEIGKK 379 (394) T ss_pred HHHhhhhcCccccCceEEEechhhhcCH--HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeccccccccccc Confidence 9999999999887777888888777644 567888999999999999999999999999 689999999999998765 Q ss_pred ccccCCCCCCccccccch Q lcl|Aclame:pro 397 QPIPMGKTEPTKAALDEI 414 (419) Q Consensus 397 ~~~~~~~~~~~~~~~~e~ 414 (419) ...+... ..+.++|+ T Consensus 380 ~~~~~~~---kgge~~en 394 (394) T protein:vir:62 380 EATDGSL---GGGEENEN 394 (394) T ss_pred ccccccC---CCCCCCCC Confidence 4332111 11112333 No 48 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=4.4e-84 Score=477.56 Aligned_cols=370 Identities=18% Similarity=0.165 Sum_probs=313.3 Q ss_pred CCccchhccc-------------------------ccccccc---cchHHHHh-----hcCCCcccccccCHHHHhccHH Q lcl|Aclame:pro 1 MFFSRQLLSN-------------------------LGQTQPG---SGGWVSAL-----LGSARSEAGQVVTPASALSLTV 47 (419) Q Consensus 1 M~f~~~~~~~-------------------------~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 47 (419) |+||..++.. .++..+. ...+.... .....+.++..++.+.++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~ 80 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDV 80 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHH Confidence 9999887763 1111111 11121111 1112344677889999999999 Q ss_pred HHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEE-eecCCCceE Q lcl|Aclame:pro 48 LQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFI-DRDQDGVIQ 126 (419) Q Consensus 48 v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i-~~~~~G~~~ 126 (419) |++||++||++||++|+++++..+. .+.+.++|+.+||++||+++||+.++.++++ ||+|+++ .++..|.+. T Consensus 81 v~acV~~Ia~~iA~lpl~~~~~~~~------~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~ 153 (409) T protein:vir:83 81 AWACIDLNASVLSSMPIYRMRNGRI------IDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPI 153 (409) T ss_pred HHHHHHHHHHhhccCceEEeeCCcc------ccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEE Confidence 9999999999999999999975432 3556678999999999999999999999887 9999875 588889999 Q ss_pred EEEEecCceeEEEEccceeEEEEeecccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCC Q lcl|Aclame:pro 127 GLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTAL 205 (419) Q Consensus 127 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~ 205 (419) +|+|++|+.|++..+.++.+.|++.+. ...++|+|++++ +.++++|+||+..+...+.+..+++++..++|+||++| T Consensus 154 ~L~pl~p~~v~v~~~~~g~~~y~~~~~--~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p 231 (409) T protein:vir:83 154 RFRVVPPWLVNVELKKGARREYRIGGL--NVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVP 231 (409) T ss_pred EEEEECCcceEEEEcCCceEEEEEccc--cCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Confidence 999999999999999888777766543 234678888765 66889999999999999999999999999999999999 Q ss_pred ceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCcee-eecCcChhhHHHHHHHHHHHHHHHHHhcCCH Q lcl|Aclame:pro 206 SGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKF-KPLSMTNVDAALIDALRLSALDIARIYKIPA 284 (419) Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~-~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp 284 (419) +++++.++.+ ++++.+++++.|++.+.+ |+|+++++.+|+++ ++++++++|+||+|.+++++++||++||||| T Consensus 232 ~gil~~~~~l----s~e~~~~~~~~~~~~~~~--nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp 305 (409) T protein:vir:83 232 LYWLGVERRL----SETEAVDLMDRWIESRSK--YAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPP 305 (409) T ss_pred ceEeecCCCC----CHHHHHHHHHHHHHhhCC--ccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCH Confidence 9999998644 788999999999988765 78999999999997 5699999999999999999999999999999 Q ss_pred HHcccccC---cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhC Q lcl|Aclame:pro 285 HMVNELER---ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQW 361 (419) Q Consensus 285 ~~~g~~~~---~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~ 361 (419) .++|..+. .+|+|+|++.+.|+++||.|++.+||++++++||++ +.+++||.+.+++.|.+++++.+++++++ T Consensus 306 ~llg~~~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~----~~~~~f~~~~llr~d~~~r~~~~~~~~~~ 381 (409) T protein:vir:83 306 FLVGLPGATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPS----PQHLELNRDDYTRPSLVERATAYKIMIEA 381 (409) T ss_pred HHccCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC----CcEEEeehhhhhccCHHHHHHHHHHHHhC Confidence 99996543 468999999999999999999999999999999975 34689999999999999999999999999 Q ss_pred CCcCHHHHHHHhCCCCCCCcceeeecccc Q lcl|Aclame:pro 362 GWLSINDIRRLENMPPVKGGDIYLSPMNM 390 (419) Q Consensus 362 g~~T~NE~R~~lGl~p~~ggD~~~~~~n~ 390 (419) |++|+||+|+++||||++|||++-- .++ T Consensus 382 G~lT~NE~R~~~glpp~~ggd~l~~-~gv 409 (409) T protein:vir:83 382 GVMEPNEARAMERLHSEAAAVRLSG-GGV 409 (409) T ss_pred CCcCHHHHHHHhCCCCCCCCcccCC-CCC Confidence 9999999999999999999998831 111 No 49 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=1.4e-83 Score=474.81 Aligned_cols=415 Identities=13% Similarity=0.124 Sum_probs=321.6 Q ss_pred CCccc-hhccccccccccc---chHHHHhhcCC-------------CcccccccCHHHHhccHHHHHHHHHHHHhhccCC Q lcl|Aclame:pro 1 MFFSR-QLLSNLGQTQPGS---GGWVSALLGSA-------------RSEAGQVVTPASALSLTVLQNCVTLLAESIAQLP 63 (419) Q Consensus 1 M~f~~-~~~~~~~~~~~~~---~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~ 63 (419) ..|++ +..++....+|.. .+|..+++-.. ....+..++...++++++|++||++||+++|++| T Consensus 63 ~~~~~~~~~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLP 142 (945) T protein:vir:10 63 IIFRKNQVLKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKE 142 (945) T ss_pred eeehhhhHHHhhcccccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCc Confidence 22332 1212222222221 22333222111 0112344677889999999999999999999999 Q ss_pred eeEeeecCCcc------eeeccchHHHHhhccccccCCHHH----HHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecC Q lcl|Aclame:pro 64 VELYERSGDDR------KPATDHPLYSILKYEPNPWQTPFE----YQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDN 133 (419) Q Consensus 64 ~~~~~~~~~~~------~~~~~~~~~~lL~~~pn~~~s~~~----f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~ 133 (419) ++++++.+++. .....|++.++|+ +||++||+++ |+++++.+++++||+|+++.|+..|.+.+|+|++| T Consensus 143 lklYrr~edG~~~~~~kk~~~~hpL~~LL~-rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdP 221 (945) T protein:vir:10 143 LEIYKHIEDKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDG 221 (945) T ss_pred eEEEEecccCcccccccccccchHHHHHHh-CCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECC Confidence 99999877763 2345688888886 9999999998 55678899999999999999999999999999999 Q ss_pred ceeEEEEccceeEEEEe----ecc---cccccceEEEecCCCCCCc---ccccHHHHHHHHHHHHHHHHHHHHHHHH-cc Q lcl|Aclame:pro 134 EAVTVMKGPDLKPMYRV----AGA---DPLPQRLVHHVRWMSINGY---TGLSPVLLHANAIGHAQAIQQYAGKSFM-NG 202 (419) Q Consensus 134 ~~v~~~~~~~~~~~~~~----~~~---~~~~~~~i~~~~~~~~~~~---~G~s~~~~~~~~i~~~~~~~~~~~~~~~-ng 202 (419) ++|++..+.++...+++ .+. .+.+.++|||+++++.++. +|+||+.++...+....++++++.++|. || T Consensus 222 s~Vti~~ddDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNG 301 (945) T protein:vir:10 222 TTIKPILSEDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGG 301 (945) T ss_pred cceEEEEcCCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCC Confidence 99999888776543322 222 2345577889988887765 4999999999999999999999999995 78 Q ss_pred CCCceEEEeCCCC------CchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 203 TALSGVIERPTDA------PALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDI 276 (419) Q Consensus 203 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 276 (419) ++|++++++++.. .+.+++++++++++.|++.++|. ++|+++++++|++|+++++++.|+||+|.+++++++| T Consensus 302 a~PsGILsvkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~-NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~eeI 380 (945) T protein:vir:10 302 SIPEGILAIEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGD-YTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKI 380 (945) T ss_pred CccceEEEecCccccccccccccCHHHHHHHHHHHHHHhCCc-ccccceecCCCceEEEccCChhHHHHHHHHHHHHHHH Confidence 8999999987542 34568999999999999999885 5678899999999999999999999999999999999 Q ss_pred HHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHH Q lcl|Aclame:pro 277 ARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYA 356 (419) Q Consensus 277 a~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~ 356 (419) |++|||||.++|..++++++|++++...|+++||.|++.+||++++++|+....+.+++++|+ .....|.+++++.+. T Consensus 381 ArAFGVPP~lLG~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~eg~~i~fdFd--~ldl~D~ksraEal~ 458 (945) T protein:vir:10 381 CAVYQVSPQDVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFRNEKDIKLWFK--EDDLEKERDWWNIIQ 458 (945) T ss_pred HHHhCCCHHHcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeEEEec--chhccCHHHHHHHHH Confidence 999999999999999999999999999999999999999999999999876555544555554 455678899999999 Q ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcceeeeccc-cccccccccccC------------CCCCCccccccchhcccC Q lcl|Aclame:pro 357 VGRQWGWLSINDIRRLENMPPVKGGDIYLSPMN-MVDASKPQPIPM------------GKTEPTKAALDEIGRILS 419 (419) Q Consensus 357 ~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n-~~~~~~~~~~~~------------~~~~~~~~~~~e~~~~~~ 419 (419) +++++|+||+||+|+++|+||+||||+++++.+ +.|.+....... .++.+..+..+|++..=+ T Consensus 459 kli~sGiLTiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dEns~~ps 534 (945) T protein:vir:10 459 GQLNTGFRSINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSSVPS 534 (945) T ss_pred HHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCC Confidence 999999999999999999999999999999874 555443221110 011111111122222111 No 50 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=4.5e-84 Score=477.50 Aligned_cols=383 Identities=18% Similarity=0.237 Sum_probs=309.7 Q ss_pred cccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhcccc Q lcl|Aclame:pro 12 GQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPN 91 (419) Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn 91 (419) -+..|...+++..+ ...+...++.+.++++++||+||++||++||++||++++.++. ....|++.++|+.+|| T Consensus 1 ~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~---~~~~~~l~~lL~~~PN 73 (723) T protein:vir:94 1 MTTFPSGAGGWNAW----SADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPDGE---LDELHPLSQLWNVMPN 73 (723) T ss_pred CcccccCCCccccc----cccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCCc---cchhhHHHHHHhhCCC Confidence 11112111112111 1123444677889999999999999999999999999865332 2356899999999999 Q ss_pred ccCCHHHHHHHHHHHHHHcCCeeEEEeecC---CCceEEEEEecCceeEEEEcccee-------EEEEe---ec-ccccc Q lcl|Aclame:pro 92 PWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ---DGVIQGLYPLDNEAVTVMKGPDLK-------PMYRV---AG-ADPLP 157 (419) Q Consensus 92 ~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~---~G~~~~l~~~~~~~v~~~~~~~~~-------~~~~~---~~-~~~~~ 157 (419) ++||+++||+.++.+++++||+|+++.|+. .|.+.+|+|+++..+.+....+.. +.|.+ .| ...++ T Consensus 74 ~~~t~~~f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~~ 153 (723) T protein:vir:94 74 RAMPAQVLKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRVPVL 153 (723) T ss_pred CCCCHHHHHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEecCceeEEec Confidence 999999999999999999999999998654 488999999999887765543321 11111 12 23477 Q ss_pred cceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 158 QRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFG 236 (419) Q Consensus 158 ~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (419) .++|+|++.+ +.++++|+||+..+.+++....++++++.++|+||++|+++|+.+. +++++.+++++.|++.++ T Consensus 154 ~~dIiHir~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~~-----l~~e~~~~~~~~~~~~~~ 228 (723) T protein:vir:94 154 ADEMLWLRFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLGD-----MDEQTFTKTVAAFRSQVE 228 (723) T ss_pred ccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCC-----CCHHHHHHHHHHHHHHhh Confidence 8899999865 6899999999999999999999999999999999999999999753 368899999999999999 Q ss_pred cccccCcceecC----------CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHH Q lcl|Aclame:pro 237 GSGNAKKVALLQ----------EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFV 306 (419) Q Consensus 237 g~~n~g~~~vl~----------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~ 306 (419) |..|+|++++|+ .|++|++++++++|+||+|.+++++++||++|||||.+++. +++++|.+++.+.|+ T Consensus 229 G~~Nagk~~vL~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~--~st~sN~e~~~~~f~ 306 (723) T protein:vir:94 229 GVQNAGRHLLIAGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLG--GSTYENQAEAKAAVW 306 (723) T ss_pred chhhcCcceeecccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCC--CCCcccHHHHHHHHH Confidence 999999999986 58999999999999999999999999999999999998864 467899999999999 Q ss_pred HHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc--ee Q lcl|Aclame:pro 307 IYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD--IY 384 (419) Q Consensus 307 ~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD--~~ 384 (419) .+||.|++.+||++++++|++. .+...+++||...+++.|.+++++.+.+++++|++|+||+|+++|+||+|||| .+ T Consensus 307 ~~tL~P~~~~ie~~ln~~Ll~~-~g~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~ 385 (723) T protein:vir:94 307 TETLIPQMEVMASITDLQLLPD-IGWTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMT 385 (723) T ss_pred HHHHHHHHHHHHHHHhHhhccc-ccCceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccce Confidence 9999999999999999999864 44566788888889999999999999999999999999999999999999988 34 Q ss_pred eecc--ccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 385 LSPM--NMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 385 ~~~~--n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) +.|. ++.|.+.+.+.. .+-..++++ T Consensus 386 ~~p~~~~~a~~~~~~p~~----------~e~~~~~~~ 412 (723) T protein:vir:94 386 LTPYRAQFAPAPAPAPAV----------EEGAARMLA 412 (723) T ss_pred eccccccccCCCCCCccc----------hhhhHhhhh Confidence 5554 333333222110 011122222 No 51 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=2.2e-82 Score=468.24 Aligned_cols=389 Identities=15% Similarity=0.158 Sum_probs=317.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc--ceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD--RKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~--~~~~~ 78 (419) |+|..++.....+........ ..+ +.. .......+.+.++++++|++||++||++||++|++++++.... ...+. T Consensus 1 mg~~~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~~~~~~~ 77 (403) T protein:vir:10 1 MGFKSWITEKLNPGQRIIRDM-EPV-SHR-TNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVTYANGVK 77 (403) T ss_pred Ccchhhhhhccchhhhhhhcc-ccc-ccc-cCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeecccccccccccc Confidence 999888765544322211110 111 111 1122335678889999999999999999999999998765532 33456 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec-ccccc Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG-ADPLP 157 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~ 157 (419) .|++.++|+.+||++||+++||+.++.+++++||||+++.+ .++++++++.+++..+.+..+.++..+ ...+. T Consensus 78 ~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~------~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 151 (403) T protein:vir:10 78 TKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG------TSLYHVPAALMQVEADANKFIKKFIFNNQINYR 151 (403) T ss_pred cchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC------ceeEeecCcceEEEEcCCceEEEEEecCceeec Confidence 78999999999999999999999999999999999998743 368999999999988877666555443 34467 Q ss_pred cceEEEecCCC-----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHH Q lcl|Aclame:pro 158 QRLVHHVRWMS-----INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWN 232 (419) Q Consensus 158 ~~~i~~~~~~~-----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (419) .++|+|++.++ .++++|+||+..+.+++....+++++..++|+||++|+++++.++.+ ++++++++++.|+ T Consensus 152 ~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l----~~e~~~~~~~~~~ 227 (403) T protein:vir:10 152 VDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEIL----NKKLRERKQEELQ 227 (403) T ss_pred ccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC----CHHHHHHHHHHHH Confidence 78899998554 47899999999999999999999999999999999999999987654 7889999999999 Q ss_pred HHhccccccCcceecCCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHh Q lcl|Aclame:pro 233 AKFGGSGNAKKVALLQEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) Q Consensus 233 ~~~~g~~n~g~~~vl~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i 310 (419) +.++|.+|+|+++++++|++|+++++ ++.|+||+|.+++++++||++|||||.++|. ++++|.+++.+.|+++|| T Consensus 228 ~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~---~~~sn~e~~~~~f~~~tl 304 (403) T protein:vir:10 228 LDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDG---GNNANIRPNIELFYYMTI 304 (403) T ss_pred HHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCC---CCCcCHHHHHHHHHHHHH Confidence 99999999999999999999999986 5789999999999999999999999999974 468899999999999999 Q ss_pred hHHHHHHHHHHHhhccChhhhhhhhhhhhhhh--hhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeee Q lcl|Aclame:pro 311 LPWVKRHEQAKTRDLLLPSERKQYFIEYNLAG--LLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLS 386 (419) Q Consensus 311 ~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~--~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~ 386 (419) .|++.+||++++++|. .++.||++. +++.|.+++++.+++++++|++|+||+|+++|+||+| +||++++ T Consensus 305 ~P~~~~ie~~l~~~L~-------~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d~~~~ 377 (403) T protein:vir:10 305 IPMLNKLTSSLTFFFG-------YKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQMNKIRI 377 (403) T ss_pred HHHHHHHHHHHHHhcC-------ceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCccccccccc Confidence 9999999999999873 346666664 4888999999999999999999999999999999995 7999999 Q ss_pred ccccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 387 PMNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 387 ~~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) |+|+.....+.... ++++ .+...|++ T Consensus 378 p~n~~~~~~~~~~~--e~~~-~~~~~~g~ 403 (403) T protein:vir:10 378 PANVAGSATGVSGQ--EGGR-PKGSTEGD 403 (403) T ss_pred ccccccccccCCCC--cCCC-CCCCcCCC Confidence 99998654432222 2221 22234444 No 52 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=4.4e-81 Score=461.13 Aligned_cols=384 Identities=17% Similarity=0.155 Sum_probs=312.8 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++.++.+...+.....|+. +++++ .++..++.++|+++|+|++||++||++||++|+++ .| T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~p~~~------------~~ 65 (397) T protein:vir:38 1 MPLLKLNKSHSQGFSLNDPDWVN-FLTGG--EAQKYVSADTALKNSDIFSLIMQLSGDLAMVRYTS------------ES 65 (397) T ss_pred CcchhhhhcccCcccCCchhhhh-hhcCC--cCCceechHHhhccHHHHHHHHHHHHHHhhCcccc------------cc Confidence 99999887766555555444544 44432 34667899999999999999999999999999964 25 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEee--c----- Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVA--G----- 152 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~--~----- 152 (419) +..++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.++.. .|.+. + T Consensus 66 ~~~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~~~~~~~ 145 (397) T protein:vir:38 66 DRSQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFDEPAIGY 145 (397) T ss_pred cHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEeccccccc Confidence 667788899999999999999999999999999999999999999999999999999988766532 22221 1 Q ss_pred ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 153 ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGW 231 (419) Q Consensus 153 ~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (419) ...+++++|+|+++++.++ ++|+||+..+...+....++.++..++|+||++|+++++++... ++++.+++++.| T Consensus 146 ~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~----~~e~~~~~~~~~ 221 (397) T protein:vir:38 146 MENVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGG----LLDAETRIARSK 221 (397) T ss_pred eeEecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCC----CHHHHHHHHHHH Confidence 2357888999999887766 78999999999999999999999999999999999999998654 567788899999 Q ss_pred HHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhh Q lcl|Aclame:pro 232 NAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLL 311 (419) Q Consensus 232 ~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~ 311 (419) +..+++ .|+|+++++++|++|++++.++.|+||.|.+++.+++||++|||||.++|+.+++ ++|.++ ...|+.+||. T Consensus 222 ~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~-~~~~e~-~~~~~~~~l~ 298 (397) T protein:vir:38 222 EISKQI-HNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQ-QSSITQ-ISGQYAKSLN 298 (397) T ss_pred HHHhcc-cccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc-ccHHHH-HHHHHHHHHH Confidence 877665 6889999999999999999999999999999999999999999999999987654 466664 4668899999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMV 391 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~ 391 (419) |++..||++|+++|+++. +|++..+.+.|.+++++.+++++++|++|+||+|+++|++|++|||.+....... T Consensus 299 P~~~~ie~~ln~~l~~~~-------~~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~ 371 (397) T protein:vir:38 299 RYVQAIVGELNDKLHANI-------SANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQ 371 (397) T ss_pred HHHHHHHHHHHHhccChh-------cccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccccccccc Confidence 999999999999998763 3445556678999999999999999999999999999999999999765444333 Q ss_pred ccccccccc----CCCCCCccccccc Q lcl|Aclame:pro 392 DASKPQPIP----MGKTEPTKAALDE 413 (419) Q Consensus 392 ~~~~~~~~~----~~~~~~~~~~~~e 413 (419) +........ .+........+.| T Consensus 372 ~~~~~~~~~~g~~~~~~~~e~~~~~~ 397 (397) T protein:vir:38 372 QAIQLIQQEGGENDGNNSDERGSDPE 397 (397) T ss_pred ccccccccccCCCCCCCCCCCCCCCC Confidence 322221111 1111111111222 No 53 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=2.2e-80 Score=457.32 Aligned_cols=340 Identities=21% Similarity=0.374 Sum_probs=296.2 Q ss_pred hccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEE Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTV 138 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~ 138 (419) ||++||+++++.+ +..|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|+.|++ T Consensus 1 ia~lp~~~~~~~~-----~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~ 75 (348) T protein:vir:93 1 MASLPLKMYEDYK-----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEM 75 (348) T ss_pred CcccceEeEecCc-----CcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEE Confidence 9999999998554 34699999999999999999999999999999999999999999999999999999999999 Q ss_pred EEccceeE-EEEeec----ccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeC Q lcl|Aclame:pro 139 MKGPDLKP-MYRVAG----ADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERP 212 (419) Q Consensus 139 ~~~~~~~~-~~~~~~----~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~ 212 (419) ..+.++.. .|.+.. ...+++++|+|++++ +.++++|+||+..+..++.+..+++++.. +.++..+.++++.+ T Consensus 76 ~~~~~~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~i~~~~ 153 (348) T protein:vir:93 76 LIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNL--TEMQKPDSFMLKYG 153 (348) T ss_pred EEeCCCcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHH--HhcCCCceeEEecC Confidence 88776543 333321 234778899999875 67899999999999999999999988863 33444456666665 Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC Q lcl|Aclame:pro 213 TDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER 292 (419) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~ 292 (419) +. .++++++++++.|++.+. |+|+++++++|++|++++++++|+||.|.+++++++||++|||||.++|..++ T Consensus 154 ~~----l~~e~~~~~~~~~~~~~~---n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~ 226 (348) T protein:vir:93 154 SN----VSTEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN 226 (348) T ss_pred CC----CCHHHHHHHHHHHHHHhh---cCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC Confidence 43 478899999999998874 56889999999999999999999999999999999999999999999999999 Q ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHH Q lcl|Aclame:pro 293 ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRR 371 (419) Q Consensus 293 ~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~ 371 (419) ++++|+|++.+.|+++||.|++++|+++|+++||++.+. .+.+++||.+.+++.|.+++++.+++++++|++|+||+|+ T Consensus 227 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~ 306 (348) T protein:vir:93 227 TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIRE 306 (348) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHH Confidence 999999999999999999999999999999999998775 4678999999999999999999999999999999999999 Q ss_pred HhCCCCCCCcceeeeccccccccccccccC-CCCCCccccccch Q lcl|Aclame:pro 372 LENMPPVKGGDIYLSPMNMVDASKPQPIPM-GKTEPTKAALDEI 414 (419) Q Consensus 372 ~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~e~ 414 (419) ++|++|+||||++++++|++|++.+...+. .++++.+. +|+ T Consensus 307 ~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~gg~~n~--~~~ 348 (348) T protein:vir:93 307 WEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNV--NES 348 (348) T ss_pred HhCCCCCCCcCeEeecccccccccchhhcccccCCCCCc--CCC Confidence 999999999999999999999988765543 23332222 333 No 54 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=3.1e-78 Score=445.49 Aligned_cols=413 Identities=12% Similarity=0.106 Sum_probs=302.7 Q ss_pred CCccchhcc--cccc------------cccccchH---HHHhhcCC-Ccc----------------cccccCHHHHhccH Q lcl|Aclame:pro 1 MFFSRQLLS--NLGQ------------TQPGSGGW---VSALLGSA-RSE----------------AGQVVTPASALSLT 46 (419) Q Consensus 1 M~f~~~~~~--~~~~------------~~~~~~~~---~~~~~~~~-~~~----------------~~~~~~~~~~~~~~ 46 (419) |.+...-++ +... ..+....- ...+.++. .+. ....+..-..+... T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~i~~~~~ 106 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAIINTRSN 106 (574) T ss_pred cccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHhhccChhHHHHHHHHHH Confidence 433311000 0000 00000000 00011100 000 01111222234556 Q ss_pred HHHHHHHHHHHhhccCCeeEeeecCCc----ceeeccchHHHHhhc---cccccC-CHHHHHHHHHHHHHHcCCeeEEEe Q lcl|Aclame:pro 47 VLQNCVTLLAESIAQLPVELYERSGDD----RKPATDHPLYSILKY---EPNPWQ-TPFEYQEQSQVAVGLRGNSYSFID 118 (419) Q Consensus 47 ~v~~~i~~ia~~ia~~~~~~~~~~~~~----~~~~~~~~~~~lL~~---~pn~~~-s~~~f~~~~~~~~l~~G~~~~~i~ 118 (419) .|++|+..|+.++|++||+|+.++.+. +..+..|++..+|.. .|||++ |+.+||+.++.+++++||+|+++. T Consensus 107 ~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~ 186 (574) T protein:vir:80 107 QVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKV 186 (574) T ss_pred HHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEE Confidence 678888888889999999998876543 334566888888854 355554 788999999999999999999999 Q ss_pred ecCCCceEEEEEecCceeEEEEccceeE------EEEe-ec--ccccccceEEEecCCCC----CCcccccHHHHHHHHH Q lcl|Aclame:pro 119 RDQDGVIQGLYPLDNEAVTVMKGPDLKP------MYRV-AG--ADPLPQRLVHHVRWMSI----NGYTGLSPVLLHANAI 185 (419) Q Consensus 119 ~~~~G~~~~l~~~~~~~v~~~~~~~~~~------~~~~-~~--~~~~~~~~i~~~~~~~~----~~~~G~s~~~~~~~~i 185 (419) |+..|.+.+|||++|.+|++..+.+++. .+++ .+ ...++.++|+|+++++. ++.+|+||+..+...+ T Consensus 187 r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i 266 (574) T protein:vir:80 187 FDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQF 266 (574) T ss_pred ECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHH Confidence 9999999999999999999988765531 2222 22 23467788889887654 3678999999999999 Q ss_pred HHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCccee-cCCCceeeecCcChhhHH Q lcl|Aclame:pro 186 GHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVAL-LQEGMKFKPLSMTNVDAA 264 (419) Q Consensus 186 ~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~v-l~~g~~~~~l~~~~~d~~ 264 (419) .++.++.+++.++|+||+.|+++|++++. ..+++++++++++.|++.++|..|+|++++ +++|++|+++++++.|+| T Consensus 267 ~~~~~a~~~~~~~f~ng~~p~gil~~~~~--~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~q 344 (574) T protein:vir:80 267 IAHENTEVFNDRFFSHGGTTRGILHVKTG--QQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQ 344 (574) T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeCCC--CCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHH Confidence 99999999999999999999999998753 345889999999999999999999999754 578999999999999999 Q ss_pred HHHHHHHHHHHHHHHhcCCHHHcccccC----------cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhh Q lcl|Aclame:pro 265 LIDALRLSALDIARIYKIPAHMVNELER----------ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQY 334 (419) Q Consensus 265 ~~e~~~~~~~~Ia~~fgvpp~~~g~~~~----------~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~ 334 (419) |+|.+++++++||++|||||.+||..+. .+++|+|++.+.|+++||.|++.+||++|+++|++..+ ..+ T Consensus 345 fle~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~-~~~ 423 (574) T protein:vir:80 345 FEKWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFG-EKY 423 (574) T ss_pred HHHHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC-Cce Confidence 9999999999999999999999997554 35789999999999999999999999999999987644 456 Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 335 FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 335 ~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) +++|+...+...+.+ +. +..++.+|+||+||+|+++||||+||||++++|+|+++++..........+..++..++. T Consensus 424 ~~~f~~~d~~~~~~~--~~-~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (574) T protein:vir:80 424 QFQFRGGDLSAQLDK--LK-IIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRL 500 (574) T ss_pred EEEecccchhhHHHH--HH-HHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhcccccc Confidence 778887766544332 22 234678999999999999999999999999999999988765433322211111111110 Q ss_pred hcccC Q lcl|Aclame:pro 415 GRILS 419 (419) Q Consensus 415 ~~~~~ 419 (419) ....+ T Consensus 501 ~~~~~ 505 (574) T protein:vir:80 501 LELSG 505 (574) T ss_pred ccccC Confidence 00000 No 55 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=2.9e-78 Score=445.69 Aligned_cols=374 Identities=12% Similarity=0.125 Sum_probs=300.8 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++++.+....... +-.. ....++.+.|+++++|++||++||+++|++||+++++.+. ..| T Consensus 1 Mg~f~~~f~~~~~~~~~---~~~~--------~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~-----~~~ 64 (385) T protein:vir:95 1 MGLFDSVFKRHSELSWM---YDLE--------FLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTK-----EKG 64 (385) T ss_pred CchhhhhhccCcccccc---cchh--------hhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCcc-----ccc Confidence 99887776543221111 1111 1234567889999999999999999999999999975443 358 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEE-EEeecccccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPM-YRVAGADPLPQR 159 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~ 159 (419) ++.++|+.+||++||+++||+.++.+++++|+||+++.++. +.+..++++.+..+........... ........++++ T Consensus 65 ~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (385) T protein:vir:95 65 TLYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEG-HFFVADDFEKEDELGLYSHRFTNVLVNDFEFKRVFTMD 143 (385) T ss_pred hHHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCC-Ceeeccccccccccccccccceeeeecccceeeeeccc Confidence 99999999999999999999999999999999999987664 4455555556655543322211111 111223457889 Q ss_pred eEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 160 LVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGS 238 (419) Q Consensus 160 ~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (419) +|+|+++++.++ .+|.||+..+...+....++.. +++.++++++++.. ...++++.+++++.|+++++|. T Consensus 144 eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-------~~~~~~g~l~~~~~--~~~~~e~~~~~~~~~~~~~~g~ 214 (385) T protein:vir:95 144 DVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-------LNNQIRGILKVDAT--KFYNKEKQKELQAYIDTLFDAF 214 (385) T ss_pred cEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-------hcCCCceEEEeCCc--cCCCHHHHHHHHHHHHHHhhhh Confidence 999999887775 6899999999998877655432 34558899998753 3457899999999999999986 Q ss_pred c-ccCcceecCCCceeeecCc------ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhh Q lcl|Aclame:pro 239 G-NAKKVALLQEGMKFKPLSM------TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLL 311 (419) Q Consensus 239 ~-n~g~~~vl~~g~~~~~l~~------~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~ 311 (419) . +.++++++++|++|+++++ ++.|+||.|.+++++++||++|||||.+++ ++++|.+++...|+++||. T Consensus 215 ~~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~----~~~sn~e~~~~~~~~~~l~ 290 (385) T protein:vir:95 215 QNNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL----GEMADLEKTIESYLQFCIN 290 (385) T ss_pred hhcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCcCHHHHHHHHHHHHHH Confidence 5 4455888999999999975 667999999999999999999999999995 4789999999999999999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CCcceeeeccc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV--KGGDIYLSPMN 389 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~--~ggD~~~~~~n 389 (419) |++.+||++|+++|+++.+....+++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+ ||||++++|+| T Consensus 291 P~~~~ie~~l~~~L~~~~~~~~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n 370 (385) T protein:vir:95 291 PLLRKIEAELNSKFFYQDEYLNDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKN 370 (385) T ss_pred HHHHHHHHHHHhhcCChhhcccceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccc Confidence 9999999999999999888777789999999999999999999999999999999999999999998 68999999999 Q ss_pred cccccccccccCCCCCCcccc Q lcl|Aclame:pro 390 MVDASKPQPIPMGKTEPTKAA 410 (419) Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~ 410 (419) +++++... ++++++. T Consensus 371 ~~~~~~~k------gge~~~e 385 (385) T protein:vir:95 371 LQSADAFK------GGESNEE 385 (385) T ss_pred ceeccccc------CCCCCCC Confidence 99987632 2221111 No 56 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=2.7e-78 Score=445.86 Aligned_cols=365 Identities=12% Similarity=0.080 Sum_probs=294.0 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc-----e Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR-----K 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~-----~ 75 (419) |+||++..+......+.... ..+++ .....+++.++|++||+.||++||++|+++++..+.+. . T Consensus 1 Mg~f~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~~~~ 69 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDTQ-------RVTAW----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) T ss_pred CCccccchhcccccccCCcc-------eeeee----ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCccccccc Confidence 99998876544333333211 11111 11234577889999999999999999999887665542 3 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec-CCCceEEEEEecCceeEEEEccceeEEEEeeccc Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD-QDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGAD 154 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~-~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 154 (419) ....|++.++|+.+||++||+++||+.++.+++++|++|++++++ ..|++..++|... .. T Consensus 70 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~~~-------------------~~ 130 (378) T protein:vir:94 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFADD-------------------KK 130 (378) T ss_pred ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEecCC-------------------ee Confidence 456799999999999999999999999999999999999987654 4577777766322 22 Q ss_pred ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) .+++++|+|+++ +.++..|.||+..+.+.+... +. ++.++++++.++.++++..+++.+++++.|++. T Consensus 131 ~~~~~diiH~~~-~~~~~~g~s~l~~~~~~i~~~----------~~-~~~~~gil~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) T protein:vir:94 131 EYKPEELVRLTS-PFYINEDTSILDNALASIQTK----------LE-QGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) T ss_pred EeeeeeeEEecC-cCCccchhHHHHHHHHHHHHH----------Hh-cccccceeeeCCcCCHHHHHHHHHHHHHHHHHh Confidence 356778999984 577888999998888766422 23 456899999998877766677778888888777 Q ss_pred hccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) +.|. ++|+++++++|++|+++++++.++++ +.+++++++||++|||||.+++ +++++++..+|+.+||.|++ T Consensus 199 ~~~~-~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~------~~~se~~~~~f~~~tL~P~~ 270 (378) T protein:vir:94 199 QEGS-SYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------GTASQEQQIYFYNSTIIPLL 270 (378) T ss_pred hccc-ccccceecCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc------CChHHHHHHHHHHHHHHHHH Confidence 7764 67899999999999999999999997 5678999999999999999994 34568999999999999999 Q ss_pred HHHHHHHHhhccChhhhhhh-------hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSERKQY-------FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~~~~-------~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~ 387 (419) .+||++++++||++.++... .++||.+.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++| T Consensus 271 ~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~ 350 (378) T protein:vir:94 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN 350 (378) T ss_pred HHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeec Confidence 99999999999998765322 37899999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 388 MNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) +|+++++.+...+.++++..+.+++.++ T Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 351 LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred ccccccccchhhcCCcCCCCCCCCCCCC Confidence 9999999887777655554444333333 No 57 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=2.8e-78 Score=445.76 Aligned_cols=365 Identities=12% Similarity=0.084 Sum_probs=293.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc-----e Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR-----K 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~-----~ 75 (419) |+||++.++......+...... ..+ .....+++.++|++||++||++||++|+++++..+++. . T Consensus 1 Mg~f~~~~~f~~~~~~~~~~~~-------~~~----~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~~~~ 69 (378) T protein:vir:93 1 MNLFGKVVSFSRGKLNNDTQRV-------TAW----QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) T ss_pred CccchhhhhhhccccCCCccee-------eec----ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEccccccccccc Confidence 9999887653322222221111 111 11234577889999999999999999999988766543 2 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC-CCceEEEEEecCceeEEEEccceeEEEEeeccc Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ-DGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGAD 154 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~-~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 154 (419) ....|++.++|+.+||++||+++||+.++.+++++|++|+++.++. .|++..++|... .. T Consensus 70 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~~~-------------------~~ 130 (378) T protein:vir:93 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFADD-------------------KK 130 (378) T ss_pred ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecCC-------------------ee Confidence 3457999999999999999999999999999999999999987664 466666665321 23 Q ss_pred ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) .+++++|+|+++ +.++..|.|++..+...+. .++. ++.++++++.++.++++..++..+++++.|++. T Consensus 131 ~~~~~diih~r~-~~~~~~~~s~l~~~~~~i~----------~~~~-~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) T protein:vir:93 131 EYKTEELVRLTS-PFYINEDTSILDNALASIQ----------TKLE-QGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) T ss_pred EeccceeEEecC-ccccchhhHHHHHHHHHHH----------HHHh-cCcccceeeeCCcCCHHHHHHHHHHHHHHHHHh Confidence 356788999984 6777888998887766543 2344 456999999998877776777788888888777 Q ss_pred hccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) +.+. ++|+++++++|++|++++++++++|+ +.+++++++||++|||||.+++ +++.+++...|+.+||.|++ T Consensus 199 ~~~~-~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~------g~~~e~~~~~f~~~tl~P~~ 270 (378) T protein:vir:93 199 QEGS-SYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------GTATQEQQIYFYNSTIIPLL 270 (378) T ss_pred hccc-ccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc------CCcHHHHHHHHHHHHHHHHH Confidence 6664 77899999999999999999999997 6678999999999999999993 45668999999999999999 Q ss_pred HHHHHHHHhhccChhhhhhh-------hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSERKQY-------FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~~~~-------~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~ 387 (419) .+||++|+++||++.++... .++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++| T Consensus 271 ~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~ 350 (378) T protein:vir:93 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN 350 (378) T ss_pred HHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeec Confidence 99999999999998765322 37899999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 388 MNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) +|++|++.+...+.+++++.++.++.++ T Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:93 351 LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred cccccccchhhhcCccCCCCCCCCCCCC Confidence 9999999988777666665444433333 No 58 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=2.9e-77 Score=440.16 Aligned_cols=369 Identities=15% Similarity=0.155 Sum_probs=301.4 Q ss_pred CCccchhcccc---cc-cccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee Q lcl|Aclame:pro 1 MFFSRQLLSNL---GQ-TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) Q Consensus 1 M~f~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~ 76 (419) |+||.++...+ .. ..+....++..+.+. .+...++.++|+++++|++||++||+++|++||++++ T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~v~~-------- 69 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMVYPSNPAFFTTTVGG---MQLSYVSALSALQNTNVYSVINRIASDVASAHFKTEN-------- 69 (385) T ss_pred Cccccchhcccccccccccccchhhhhhhccc---cCccccCHHHhhccHHHHHHHHHHHHHHhhCceeeec-------- Confidence 99775442221 11 112222333333332 2355688999999999999999999999999999864 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec---- Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG---- 152 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---- 152 (419) |....+|+ +||++||+++||+.++.+++++||||+++.|+ +.+++|+++.+|++..+..+...++... T Consensus 70 ---~~~~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~----~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (385) T protein:vir:10 70 ---TATLNRLE-SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLESNDRP 141 (385) T ss_pred ---cchhhhhh-cCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCCceEEEEEcCCceEEEEEEcCCce Confidence 34445664 89999999999999999999999999999865 5678999999999888776654444321 Q ss_pred ccccccceEEEecCCC---CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHH Q lcl|Aclame:pro 153 ADPLPQRLVHHVRWMS---INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITD 229 (419) Q Consensus 153 ~~~~~~~~i~~~~~~~---~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (419) ...+++++|+|+++++ .++++|+||+..+...+....+++++..++|+||+.|++++++++.. .++++.+++++ T Consensus 142 ~~~~~~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~---~~~e~~~~~~~ 218 (385) T protein:vir:10 142 QMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL---SDGKDLESARE 218 (385) T ss_pred EEEEccccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC---CCHHHHHHHHH Confidence 3358889999999754 45679999999999999999999999999999999999999998543 25688999999 Q ss_pred HHHHHhccccccCcceecCCCceeeecCcChhhHHHH-HHHHHHHHHHHHHhcCCHHHccccc--CcccccHHHHHHHHH Q lcl|Aclame:pro 230 GWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALI-DALRLSALDIARIYKIPAHMVNELE--RATFSNIEHQSLQFV 306 (419) Q Consensus 230 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgvpp~~~g~~~--~~~~sn~e~~~~~~~ 306 (419) .|++.++| .|+|+++++++|++|+++++++.|+|++ |.+++++++||++|||||.++|..+ +++++|.|++.. ++ T Consensus 219 ~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~-~~ 296 (385) T protein:vir:10 219 EFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-TY 296 (385) T ss_pred HHHHHhCc-cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHH-HH Confidence 99999877 6899999999999999999999999975 9999999999999999999999744 567889887655 55 Q ss_pred HHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cccee Q lcl|Aclame:pro 307 IYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIY 384 (419) Q Consensus 307 ~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~ 384 (419) ..||.|+++.|+++++++|+++ .++||++.+++.|.+++++.+++++++|++|+||+|+++|++|+| ++|.+ T Consensus 297 ~~~l~P~~~~ie~~l~~~l~~~------~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~ 370 (385) T protein:vir:10 297 LANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (385) T ss_pred HHHHHHHHHHHHHHHHHhhCCc------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCccc Confidence 6799999999999999999865 388999999999999999999999999999999999999999996 45677 Q ss_pred eeccccccccccccc Q lcl|Aclame:pro 385 LSPMNMVDASKPQPI 399 (419) Q Consensus 385 ~~~~n~~~~~~~~~~ 399 (419) .+|.+.+..++.+++ T Consensus 371 ~~~~~~~~~g~~~dn 385 (385) T protein:vir:10 371 KPLTTQVKGGDEGDN 385 (385) T ss_pred cCcccccCCCCCCCC Confidence 766664332221111 No 59 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=5.5e-78 Score=444.14 Aligned_cols=365 Identities=12% Similarity=0.078 Sum_probs=292.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcce----- Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRK----- 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~----- 75 (419) |+||++..+......+.... ....+. ....+++.++|++||++||++||++||++++..+.+.. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~-------~~~~~~----~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~~~~ 69 (378) T protein:vir:16 1 MNLFGKVVSFSRGKLNNDTQ-------RVTAWQ----NEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) T ss_pred CccchhhhhhhcccccCCcc-------eeeecc----cchhhHHHHHHHHHHHHHHhhhhhCceeEEEEccccccccccc Confidence 99998876543332222211 001111 12345788899999999999999999999987765432 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-CceEEEEEecCceeEEEEccceeEEEEeeccc Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-GVIQGLYPLDNEAVTVMKGPDLKPMYRVAGAD 154 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 154 (419) ....|++.++|+.+||++||+++||+.++.+++++|++|+++.++.. |++..++|... .. T Consensus 70 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~~~-------------------~~ 130 (378) T protein:vir:16 70 SMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFADD-------------------KK 130 (378) T ss_pred ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEecCC-------------------ee Confidence 34579999999999999999999999999999999999999887754 66666655322 23 Q ss_pred ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) .++.++|+|+|+ +.++..|.|++..+.+.+. ..+ .++.++++++.++.++++..+++.+++++.|++. T Consensus 131 ~~~~~diih~r~-~~~~~~~~s~l~~~~~~i~----------~~~-~~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) T protein:vir:16 131 EYKPEELVRLTS-PFYINEDTSILDNALASIQ----------TKL-EQGKLRGLLKINAFLDIDNTQEYREKALTTIKNM 198 (378) T ss_pred EecccceEEecC-ccCccchhHHHHHHHHHHH----------HHH-hcCccceeeEeCCcCCHHHHHHHHHHHHHHHHHh Confidence 356788999984 5677788898887776543 223 3567899999998877776677778888888777 Q ss_pred hccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) +.| .|+|+++++++|++|++++++++++++. .+++++++||++|||||.+++ +++.+++..+|+.+||.|++ T Consensus 199 ~~~-~~~g~~~vl~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~------g~~~e~~~~~f~~~tl~P~~ 270 (378) T protein:vir:16 199 QEG-SSYNGLTPVDNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILL------GTASQEQQIYFYNSTIIPLL 270 (378) T ss_pred hcc-cccccceEcCCCceEEEccCChhhhhHH-HHHHHHHHHHHHhCCCHHHhc------CCchHHHHHHHHHHHHHHHH Confidence 665 4788999999999999999999999975 568999999999999999993 45668999999999999999 Q ss_pred HHHHHHHHhhccChhhhhhh-------hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSERKQY-------FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~~~~-------~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~ 387 (419) .+||++++++||++.++..+ .++||.+.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++| T Consensus 271 ~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~ 350 (378) T protein:vir:16 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN 350 (378) T ss_pred HHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeec Confidence 99999999999998765322 37899999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 388 MNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) +|+++++.+...+.++++..+++++.++ T Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 351 LNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred cccccccchhhhcCccCCCCCCCCCCCC Confidence 9999999887776655555444333333 No 60 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=8.1e-77 Score=437.74 Aligned_cols=374 Identities=14% Similarity=0.158 Sum_probs=305.2 Q ss_pred CCccchhcccccccccccchHHHHhhc--CCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLG--SARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~ 78 (419) |+||++.++..........+|+....+ .....++..++.++++++|+|++||++||+++|++|++++++ T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~--------- 71 (386) T protein:vir:48 1 MPIFNITNLATESPPISQGGFFDITDPDFLSTLNGSEWVSAESALRNSDLFSIINQLSNDLATVKLTASRK--------- 71 (386) T ss_pred CcccccccccccccccccccccccccchhcccccCCceechhhhhcchHHHHHHHHHHHhhccCceeeccc--------- Confidence 999988766554333333333322111 223445677899999999999999999999999999999753 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEE-EEe--ec--- Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPM-YRV--AG--- 152 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~-~~~--~~--- 152 (419) ..+.|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|++|++..+.++... |.+ .+ T Consensus 72 ---~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~ 148 (386) T protein:vir:48 72 ---QLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRI 148 (386) T ss_pred ---hhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEecCccc Confidence 235577899999999999999999999999999999999999999999999999999887765432 222 12 Q ss_pred --ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHH Q lcl|Aclame:pro 153 --ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITD 229 (419) Q Consensus 153 --~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (419) ...+++++|+|+++++.++ ++|+||+..+..++..+.+++++..++|+||++|+++++.++.. ++++.+++++ T Consensus 149 ~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~----~~e~~~~~~~ 224 (386) T protein:vir:48 149 PPKQHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGG----LLDFKTKLSR 224 (386) T ss_pred cceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC----CHHHHHHHHH Confidence 2346788999999887776 89999999999999999999999999999999999999998754 5677778888 Q ss_pred HHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 230 GWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYT 309 (419) Q Consensus 230 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~ 309 (419) .|... ..|+|+++++++|++|+++++++.|+||+|.+++++++||++|||||.++|. .+++++.+++.+.|+++| T Consensus 225 ~~~~~---~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~~~~~~e~~~~~~~~~~ 299 (386) T protein:vir:48 225 SRQAM---KQMQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGG--QGDQQSSLEMSLDLYNKA 299 (386) T ss_pred HHHHh---hcCCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CCCcccHHHHHHHHHHHH Confidence 77653 4578999999999999999999999999999999999999999999999986 346889999999999999 Q ss_pred hhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceee-ecc Q lcl|Aclame:pro 310 LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYL-SPM 388 (419) Q Consensus 310 i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~-~~~ 388 (419) |.|++..||++++++|++. +.+|.....+.|....+..+++++++|++|+||+|+++|++|++++|... ... T Consensus 300 l~P~~~~ie~~l~~~l~~~-------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~~~~~~~~~~ 372 (386) T protein:vir:48 300 VSRYLRPFLSELSQKLSCD-------VDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEILPKELPEGENP 372 (386) T ss_pred HHHHHHHHHHHHHHhhcch-------hhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCCccchhhcCC Confidence 9999999999999999864 45566666777888888999999999999999999999999998777542 222 Q ss_pred ccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 389 NMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 389 n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) |..+.. +++.++ +| T Consensus 373 ~~~~~~---------gGd~~~--~~ 386 (386) T protein:vir:48 373 NKTTLK---------GGEING--ED 386 (386) T ss_pred CCCccC---------CCCCCC--CC Confidence 222221 111111 11 No 61 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=1.2e-76 Score=436.85 Aligned_cols=369 Identities=15% Similarity=0.162 Sum_probs=301.5 Q ss_pred CCccch-hccccccc---ccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee Q lcl|Aclame:pro 1 MFFSRQ-LLSNLGQT---QPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) Q Consensus 1 M~f~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~ 76 (419) |+||.+ ++.+.... .+....|+..++++. .+..++.++|+++|+|++||++||+++|++||++++ T Consensus 1 Mg~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~-------- 69 (383) T protein:vir:10 1 MGLLTPKNFSKRNAKNMVYPSNPAFFTTTVGGM---QLSYVSALSALQNTNVYSVINRIASDVSSAHFKTEN-------- 69 (383) T ss_pred CCcccccccccccccccccccchhhhhhhccCc---cccccchhHhhcchHHHHHHHHHHHhhccCceeecc-------- Confidence 997753 22222222 222234454444332 345588999999999999999999999999998864 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec---- Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG---- 152 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~---- 152 (419) |+...+|+ +||++||+++||+.++.+++++||||+++.|+ +.+++|+++.+|++..+.++....+... T Consensus 70 ---~~~~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~----~~~~~p~~~~~v~~~~~~~~~~~~~~~~~~~~ 141 (383) T protein:vir:10 70 ---TATLNRLE-SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIVYTVLESNDRP 141 (383) T ss_pred ---cchhhhhh-CCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCcceEEEEEcCCceEEEEEEcCCce Confidence 34456665 89999999999999999999999999999865 4678899999998887776654443322 Q ss_pred ccccccceEEEecCCC---CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHH Q lcl|Aclame:pro 153 ADPLPQRLVHHVRWMS---INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITD 229 (419) Q Consensus 153 ~~~~~~~~i~~~~~~~---~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (419) ...+++++|+|+++.+ .++++|+||+..+...+....++++++.++|+||++|++++++++.. .++++.+++++ T Consensus 142 ~~~~~~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~---~~~e~~~~~~~ 218 (383) T protein:vir:10 142 KMVLRQDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYL---SDGKDLESARE 218 (383) T ss_pred EEEEcccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCC---CCHHHHHHHHH Confidence 3457889999998754 34578999999999999999999999999999999999999998644 25789999999 Q ss_pred HHHHHhccccccCcceecCCCceeeecCcChhhHHH-HHHHHHHHHHHHHHhcCCHHHccccc--CcccccHHHHHHHHH Q lcl|Aclame:pro 230 GWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAAL-IDALRLSALDIARIYKIPAHMVNELE--RATFSNIEHQSLQFV 306 (419) Q Consensus 230 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~-~e~~~~~~~~Ia~~fgvpp~~~g~~~--~~~~sn~e~~~~~~~ 306 (419) .|++.++| .|+|+++++++|++|++++.++.|+|+ .|.+++++++||++|||||.++|..+ +.+++|.|+++..| T Consensus 219 ~~~~~~~~-~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~- 296 (383) T protein:vir:10 219 EFEKANTG-DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY- 296 (383) T ss_pred HHHHHhCc-cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHH- Confidence 99998887 589999999999999999999999997 49999999999999999999999754 56788988887655 Q ss_pred HHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeee Q lcl|Aclame:pro 307 IYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLS 386 (419) Q Consensus 307 ~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~ 386 (419) ..||.|+++.||++++++|+.+ +++||++.+++.|.+++++.+.+++++|++|+||+|+++|++|+++||.... T Consensus 297 ~~~l~P~~~~ie~~l~~~l~~~------~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~ 370 (383) T protein:vir:10 297 LANLNSYVNPIVDELRLKMNAP------DLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEF 370 (383) T ss_pred HHHHHHHHHHHHHHHHHhhCCc------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCccccc Confidence 5699999999999999999764 4889999999999999999999999999999999999999999999997654 Q ss_pred ccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 387 PMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 387 ~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) ..+..+. +++ ++| T Consensus 371 ~~~~~~~---------~gG-----d~e 383 (383) T protein:vir:10 371 KPLTNET---------KGG-----DDK 383 (383) T ss_pred CCCcccC---------CCC-----CCC Confidence 4332211 111 122 No 62 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=2.1e-76 Score=435.47 Aligned_cols=372 Identities=15% Similarity=0.163 Sum_probs=296.0 Q ss_pred CCccchhcccccccccc------cchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPG------SGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |+|++.+++........ .......++......++..++..+|+++|+|++||++||++||++|++++++.. T Consensus 3 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:74 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccCcccccccccccccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhccCceeeccchh--- Confidence 88887776653322111 111223445555556788899999999999999999999999999999986543 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEee-- Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVA-- 151 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~-- 151 (419) ..|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.++.. .|.+. T Consensus 80 ---------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~~~~~ 150 (392) T protein:vir:74 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD 150 (392) T ss_pred ---------hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEec Confidence 236679999999999999999999999999999999999999999999999999998765532 22222 Q ss_pred c-----ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 152 G-----ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 152 ~-----~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) + ...+++++|+|+++++.++ ++|+||+..+...+.+..+++++..++|+||+.|++++++++... .++++ T Consensus 151 ~~~~~~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~--~~~~~-- 226 (392) T protein:vir:74 151 DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LSDKD-- 226 (392) T ss_pred CCccceeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC--chHHH-- Confidence 1 2347789999999988887 789999999999999999999999999999999999999986432 23333 Q ss_pred HHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQF 305 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~ 305 (419) ++.|.+.+.|..|+|+++++++|++|++++++++|+||+|.+++++++||++|||||.++|..++.+ +.+++.++| T Consensus 227 --~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~--~~~e~~~~~ 302 (392) T protein:vir:74 227 --KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGDQQ--SSIQQISGM 302 (392) T ss_pred --HHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcc--cHHHHHHHH Confidence 4556667788889999999999999999999999999999999999999999999999999765433 446778899 Q ss_pred HHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCcc Q lcl|Aclame:pro 306 VIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLE---NMPPVKGGD 382 (419) Q Consensus 306 ~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~l---Gl~p~~ggD 382 (419) +++||.|++..|+++++++|++. ++||...+.+.|.+++++.+.+++++|++|+||+|+++ |+.| + T Consensus 303 ~~~~l~p~~~~ie~~l~~~l~~~-------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~p----n 371 (392) T protein:vir:74 303 YASALNRYLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIP----K 371 (392) T ss_pred HHHHHHHHHHHHHHHHHHhccch-------hcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCCc----c Confidence 99999999999999999999754 67888888899999999999999999999999999987 3322 1 Q ss_pred eeeeccccccccccccccCCCCCC Q lcl|Aclame:pro 383 IYLSPMNMVDASKPQPIPMGKTEP 406 (419) Q Consensus 383 ~~~~~~n~~~~~~~~~~~~~~~~~ 406 (419) +....-|+.+..... .+++-+ T Consensus 372 e~r~~enl~~~~~Gd---~~~p~p 392 (392) T protein:vir:74 372 DLPAPENTNKKTTGQ---SNEPVP 392 (392) T ss_pred ccchhcCCCCCCCCC---CCCCCC Confidence 111111222111000 000011 No 63 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=2.7e-76 Score=434.87 Aligned_cols=410 Identities=12% Similarity=0.102 Sum_probs=298.6 Q ss_pred CCc-cchhccccccc--ccccchHHHHhhcCCC-ccccccc-----CHHHHhccHHHHHHHHHHHHhhcc---------- Q lcl|Aclame:pro 1 MFF-SRQLLSNLGQT--QPGSGGWVSALLGSAR-SEAGQVV-----TPASALSLTVLQNCVTLLAESIAQ---------- 61 (419) Q Consensus 1 M~f-~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~~~~~~v~~~i~~ia~~ia~---------- 61 (419) |.. ..+.+..+... ++..+ ...+-++.. ..+..+. ....+..+|+|++||++||+.||+ T Consensus 39 ~~~~~~k~~~~~~~a~~~~~~~--~~~~~~~~~~r~~~~~~~~l~~~~~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~ 116 (551) T protein:vir:80 39 EQEQISKAMNNKEVAYSQPVIG--SMSANPGFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHSEK 116 (551) T ss_pred cHHHHHHhhccCcceeeccccc--ceecCcccccCccccChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcC Confidence 331 11222222211 11110 011111111 1111111 123456789999999999999997 Q ss_pred -CCeeEeeecCCcce----eeccchHHHHhhcccccc-----CCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 62 -LPVELYERSGDDRK----PATDHPLYSILKYEPNPW-----QTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 62 -~~~~~~~~~~~~~~----~~~~~~~~~lL~~~pn~~-----~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) ++|.+..+..+.+. ....+.+..+| .+||++ +|+.+|+++++.+++++||+|+++.|+..|.+.+|||+ T Consensus 117 g~~~~i~~kd~~~~~~~~~~~~~~~i~~~l-~~pn~~~~p~~~s~~~f~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l 195 (551) T protein:vir:80 117 GVGFEVRLKDLDKKPTSHDEATIKRIESFI-EKTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAK 195 (551) T ss_pred CCCceEEecccCcccChhHHHHHHHHHHHH-HhcCCCCCCccchHHHHHHHHHHHHHhcCCEEEEEEECCCCcEEEEEEe Confidence 44554333222111 11223445555 478887 48889999999999999999999999999999999999 Q ss_pred cCceeEEEEccceeE-----EE-E-eecc--cccccceEEEecCCCC----CCcccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 132 DNEAVTVMKGPDLKP-----MY-R-VAGA--DPLPQRLVHHVRWMSI----NGYTGLSPVLLHANAIGHAQAIQQYAGKS 198 (419) Q Consensus 132 ~~~~v~~~~~~~~~~-----~~-~-~~~~--~~~~~~~i~~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 198 (419) +|++|++..+.++.. .| + ..+. ..+++++|+|+++++. ++.+|+||+.++...+..+.++++++.++ T Consensus 196 ~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~~~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~ 275 (551) T protein:vir:80 196 DPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFNDRF 275 (551) T ss_pred CCceeEEEECCccccccCceEEEEEeCCcEEEEEcccceEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHH Confidence 999999988776532 12 1 2222 2467888999886653 35789999999999999999999999999 Q ss_pred HHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec-CCCceeeecCcChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 FMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL-QEGMKFKPLSMTNVDAALIDALRLSALDIA 277 (419) Q Consensus 199 ~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 277 (419) |+||++|+++|++++. ..+++++++++++.|++.++|.+|+|+++++ ++|++|+++++++.|+||+|.+++++++|| T Consensus 276 f~Ng~~p~giL~~~~~--~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia 353 (551) T protein:vir:80 276 FSHGGTTRGILQIKAA--QQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINVIS 353 (551) T ss_pred HHcCCCcceEEEEcCC--CCCCHHHHHHHHHHHHHHhcCccccCccccccCCCceEEEccCChhHHHHHHHHHHHHHHHH Confidence 9999999999998753 3357899999999999999999999998666 689999999999999999999999999999 Q ss_pred HHhcCCHHHcccccC----------cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 278 RIYKIPAHMVNELER----------ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGD 347 (419) Q Consensus 278 ~~fgvpp~~~g~~~~----------~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d 347 (419) ++|||||.+||+.+. .+++|.+++...|+++||.|++.+||++|+++|++... ..+ .|+++.+...+ T Consensus 354 ~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~-~~~--~f~f~~~~~~~ 430 (551) T protein:vir:80 354 ALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG-DKY--TFQFVGGDIKS 430 (551) T ss_pred HHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccC-Cce--EEEeeccChhh Confidence 999999999997543 37899999999999999999999999999999986543 334 44555666777 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-CCCcceeeeccccccccccccccCCCCCCcc------------------ Q lcl|Aclame:pro 348 QSSRYAAYAVGRQWGWLSINDIRRLENMPP-VKGGDIYLSPMNMVDASKPQPIPMGKTEPTK------------------ 408 (419) Q Consensus 348 ~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p-~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~------------------ 408 (419) ..++++++. ++.+|+||+||+|+++||+| +||||+++.|.++++++...+.+..+.+..+ T Consensus 431 ~~~~~~~~~-~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (551) T protein:vir:80 431 ELESVKILA-EKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVSTDV 509 (551) T ss_pred HHHHHHHHH-HHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCcchhhhhhccccccCcCCCCCCCCC Confidence 777777664 66789999999999999998 7999999999988876543322211111000 Q ss_pred ----------ccccchhcccC Q lcl|Aclame:pro 409 ----------AALDEIGRILS 419 (419) Q Consensus 409 ----------~~~~e~~~~~~ 419 (419) +..++.+++=+ T Consensus 510 ~~~p~~~~~~~~~~~~~~~~~ 530 (551) T protein:vir:80 510 EDIPDGKDTTGDIGKDGQRKD 530 (551) T ss_pred CCCCCccccCCCccccccccC Confidence 11111122221 No 64 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=5.1e-76 Score=433.35 Aligned_cols=409 Identities=13% Similarity=0.102 Sum_probs=304.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc--ceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD--RKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~--~~~~~ 78 (419) +.|++ .+...+...+-.-+...+...+.. . ...+.+....++++|+..+++.++++|+++++....+ +.... T Consensus 57 ~~g~~---~~~~~~~~~~~~~l~~~~~~~~~~-~--~~i~t~~~~va~~~~i~~~s~~~~~~~i~l~~~~~~~~~~~~~~ 130 (535) T protein:vir:10 57 VAGQY---SVASISDVLSTKKLLKAYADNDIV-Q--AIIRTRTNQVLTYSNPSRYNRNGVGFKVELKDATKVMSKAQIKR 130 (535) T ss_pred ccccc---ccCccccccCHHHHHHHhccChhH-H--HHHHHHHHHHHHHHHHHHHhcccCcceeEEEeccCCCcchhhhh Confidence 22211 111111111111122223222111 1 1124556778899999999999999999998775543 34456 Q ss_pred cchHHHHhhccccccCCHHH----HHHHHHHHHHHc-CCeeEEEeecCCCceEEEEEecCceeEEEEccce----eEEEE Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFE----YQEQSQVAVGLR-GNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL----KPMYR 149 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~----f~~~~~~~~l~~-G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~----~~~~~ 149 (419) .|++.++|+.+||++|++++ |+++++.+++++ |++|++|.|+..|++.+|||++|+.|++..+.++ ...+. T Consensus 131 ~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V~v~~d~~~~~~~~~~~~ 210 (535) T protein:vir:10 131 AHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKVVISYSPRSKDQPRKFEQ 210 (535) T ss_pred hhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCceeEEEEcCccccCceEEEE Confidence 68899999999999999876 555667776665 5789999999999999999999999999876543 22222 Q ss_pred ee-c--ccccccceEEEecCCCC----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHH Q lcl|Aclame:pro 150 VA-G--ADPLPQRLVHHVRWMSI----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQA 222 (419) Q Consensus 150 ~~-~--~~~~~~~~i~~~~~~~~----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~ 222 (419) +. + ...+++++|+|+++++. ++.+|+||+..+...+..+.++++++.++|+||++|+++|++++..+..++++ T Consensus 211 ~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p~giL~~~~~~~~~ls~e 290 (535) T protein:vir:10 211 FVSETKSVKFSERNLTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTTRGILVIDQDGDAQANQM 290 (535) T ss_pred EecCceeEEECcccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHH Confidence 22 2 23467788888887654 35679999999999999999999999999999999999999998777778999 Q ss_pred HHHHHHHHHHHHhccccccCcceecC-CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccccc---- Q lcl|Aclame:pro 223 SVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSN---- 297 (419) Q Consensus 223 ~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn---- 297 (419) +++++++.|++.++|.+|+|+++++. +|++|+++++++.|+||+|.+++++++||++|||||.+||..++++|+| T Consensus 291 ~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp~~lG~~~~at~sn~~~~ 370 (535) T protein:vir:10 291 MLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQPEEINFPNNGGSTGKSGT 370 (535) T ss_pred HHHHHHHHHHHHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccccCcccccchhh Confidence 99999999999999999999987765 6999999999999999999999999999999999999999988877754 Q ss_pred --------HHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHH Q lcl|Aclame:pro 298 --------IEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDI 369 (419) Q Consensus 298 --------~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~ 369 (419) .|++...|++.||.|++..||++|+++|++..+. .+.|+++.+++.|.++++++++.+. +|+||+||+ T Consensus 371 ~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~~~---~~~f~f~~l~~~d~~~r~~~~~~~~-~g~lT~NE~ 446 (535) T protein:vir:10 371 KSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMRYVDT---DYRFSFTLGDAQDKLQEEQVWKLKL-ANGYFINEY 446 (535) T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC---eEEEEeccccccCHHHHHHHHHHHH-cCCCCHHHH Confidence 5677778999999999999999999999976442 3567778899999999999887665 678999999 Q ss_pred HHHhCCCCCCCcceeeecc---ccccccc---c---cccc--CCCCCCc------------cccccchhcccC Q lcl|Aclame:pro 370 RRLENMPPVKGGDIYLSPM---NMVDASK---P---QPIP--MGKTEPT------------KAALDEIGRILS 419 (419) Q Consensus 370 R~~lGl~p~~ggD~~~~~~---n~~~~~~---~---~~~~--~~~~~~~------------~~~~~e~~~~~~ 419 (419) |+++||||+||||+++... ++..... + .+.+ ..+.++. +...++.++... T Consensus 447 R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~~g~~~~~~~~~ 519 (535) T protein:vir:10 447 RKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDYEKGKDDPKSPLP 519 (535) T ss_pred HHHhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCccccCcccccccccccCCCCCCCCCC Confidence 9999999999999866432 2221110 0 0000 0000000 011122222222 No 65 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=1e-76 Score=437.22 Aligned_cols=380 Identities=15% Similarity=0.150 Sum_probs=297.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++++++....... . ....+..++.+.++++++|++||++||+++|++||+++++. .+..| T Consensus 1 Mg~f~~lf~~~~~~~~~-----~------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~-----~~~~~ 64 (395) T protein:vir:10 1 MSILEKIFKTRKDITYM-----L------DLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN-----RIQKN 64 (395) T ss_pred CchhhhhhccCcccccc-----c------cchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC-----ccccc Confidence 99988776654332211 1 11234567888899999999999999999999999998743 34578 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-EEEEe---eccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-PMYRV---AGADPL 156 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-~~~~~---~~~~~~ 156 (419) ++.++|+.+||++||+++||+.++.++++.|++|+++.++.. ++++++..+++....+.. ..+.. .....+ T Consensus 65 ~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (395) T protein:vir:10 65 DVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE-----LLIADSFYREEYALYDDIFKDVTVKDYTYQRTF 139 (395) T ss_pred hHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC-----eEecCCccceeEeecCcceeEEEEcCceeeeee Confidence 999999999999999999999999999999999888765542 344444444443322211 11111 113457 Q ss_pred ccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 PQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 157 ~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) ++++|+|+++++ ....+|.||+..+...+.... +.|.+++.+++++.+++.. .++++.+++++.|++.+ T Consensus 140 ~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~---~~~e~~~~~~~~~~~~~ 209 (395) T protein:vir:10 140 TMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSA---YDEKNIEKLQAFTNKLF 209 (395) T ss_pred ccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCC---CCHHHHHHHHHHHHHHh Confidence 788999998754 456789999999887776544 3567889999999987543 47899999999999998 Q ss_pred ccccc-cCcceecCCCceeeecCcChhhH-----HHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 236 GGSGN-AKKVALLQEGMKFKPLSMTNVDA-----ALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYT 309 (419) Q Consensus 236 ~g~~n-~g~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~ 309 (419) ++.++ ...++++++|++|++++++|.++ ||+|.+++++++||++|||||.++| ++++|.+++.+.|+++| T Consensus 210 ~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~ 285 (395) T protein:vir:10 210 NTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFC 285 (395) T ss_pred ccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHH Confidence 88643 23356689999999999988765 8999999999999999999999996 47889999999999999 Q ss_pred hhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc--ceeeec Q lcl|Aclame:pro 310 LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGG--DIYLSP 387 (419) Q Consensus 310 i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~gg--D~~~~~ 387 (419) |.|++.+||++|+++|+++.+.. ..++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||| |++++| T Consensus 286 l~P~~~~ie~~l~~kL~~~~~~~-~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~ 364 (395) T protein:vir:10 286 LTPLLKKIQNELNAKLITQSMYL-KDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLIT 364 (395) T ss_pred HHHHHHHHHHHHHHhhcChhhhc-ccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeec Confidence 99999999999999999876643 245799999999999999999999999999999999999999999875 999999 Q ss_pred cccccccccccccCC--CCCCccccccchhc Q lcl|Aclame:pro 388 MNMVDASKPQPIPMG--KTEPTKAALDEIGR 416 (419) Q Consensus 388 ~n~~~~~~~~~~~~~--~~~~~~~~~~e~~~ 416 (419) +|+++++.+...+.. +.....+.++++|- T Consensus 365 ~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 365 KNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred cccccccccccccCcccccccCCCCCCCCCC Confidence 999998766444322 11122233333444 No 66 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=1e-76 Score=437.22 Aligned_cols=380 Identities=15% Similarity=0.150 Sum_probs=297.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++++++....... . ....+..++.+.++++++|++||++||+++|++||+++++. .+..| T Consensus 1 Mg~f~~lf~~~~~~~~~-----~------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~-----~~~~~ 64 (395) T protein:vir:95 1 MSILEKIFKTRKDITYM-----L------DLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN-----RIQKN 64 (395) T ss_pred CchhhhhhccCcccccc-----c------cchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC-----ccccc Confidence 99988776654332211 1 11234567888899999999999999999999999998743 34578 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-EEEEe---eccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-PMYRV---AGADPL 156 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-~~~~~---~~~~~~ 156 (419) ++.++|+.+||++||+++||+.++.++++.|++|+++.++.. ++++++..+++....+.. ..+.. .....+ T Consensus 65 ~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (395) T protein:vir:95 65 DVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE-----LLIADSFYREEYALYDDIFKDVTVKDYTYQRTF 139 (395) T ss_pred hHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC-----eEecCCccceeEeecCcceeEEEEcCceeeeee Confidence 999999999999999999999999999999999888765542 344444444443322211 11111 113457 Q ss_pred ccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 PQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 157 ~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) ++++|+|+++++ ....+|.||+..+...+.... +.|.+++.+++++.+++.. .++++.+++++.|++.+ T Consensus 140 ~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~---~~~e~~~~~~~~~~~~~ 209 (395) T protein:vir:95 140 TMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSA---YDEKNIEKLQAFTNKLF 209 (395) T ss_pred ccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCC---CCHHHHHHHHHHHHHHh Confidence 788999998754 456789999999887776544 3567889999999987543 47899999999999998 Q ss_pred ccccc-cCcceecCCCceeeecCcChhhH-----HHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 236 GGSGN-AKKVALLQEGMKFKPLSMTNVDA-----ALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYT 309 (419) Q Consensus 236 ~g~~n-~g~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~ 309 (419) ++.++ ...++++++|++|++++++|.++ ||+|.+++++++||++|||||.++| ++++|.+++.+.|+++| T Consensus 210 ~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~ 285 (395) T protein:vir:95 210 NTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFC 285 (395) T ss_pred ccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHH Confidence 88643 23356689999999999988765 8999999999999999999999996 47889999999999999 Q ss_pred hhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc--ceeeec Q lcl|Aclame:pro 310 LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGG--DIYLSP 387 (419) Q Consensus 310 i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~gg--D~~~~~ 387 (419) |.|++.+||++|+++|+++.+.. ..++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||| |++++| T Consensus 286 l~P~~~~ie~~l~~kL~~~~~~~-~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~ 364 (395) T protein:vir:95 286 LTPLLKKIQNELNAKLITQSMYL-KDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLIT 364 (395) T ss_pred HHHHHHHHHHHHHHhhcChhhhc-ccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeec Confidence 99999999999999999876643 245799999999999999999999999999999999999999999875 999999 Q ss_pred cccccccccccccCC--CCCCccccccchhc Q lcl|Aclame:pro 388 MNMVDASKPQPIPMG--KTEPTKAALDEIGR 416 (419) Q Consensus 388 ~n~~~~~~~~~~~~~--~~~~~~~~~~e~~~ 416 (419) +|+++++.+...+.. +.....+.++++|- T Consensus 365 ~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 365 KNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred cccccccccccccCcccccccCCCCCCCCCC Confidence 999998766444322 11122233333444 No 67 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=1e-76 Score=437.22 Aligned_cols=380 Identities=15% Similarity=0.150 Sum_probs=297.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++++++....... . ....+..++.+.++++++|++||++||+++|++||+++++. .+..| T Consensus 1 Mg~f~~lf~~~~~~~~~-----~------~~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~-----~~~~~ 64 (395) T protein:vir:10 1 MSILEKIFKTRKDITYM-----L------DLDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGN-----RIQKN 64 (395) T ss_pred CchhhhhhccCcccccc-----c------cchhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCC-----ccccc Confidence 99988776654332211 1 11234567888899999999999999999999999998743 34578 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-EEEEe---eccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-PMYRV---AGADPL 156 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-~~~~~---~~~~~~ 156 (419) ++.++|+.+||++||+++||+.++.++++.|++|+++.++.. ++++++..+++....+.. ..+.. .....+ T Consensus 65 ~~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (395) T protein:vir:10 65 DVYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSKE-----LLIADSFYREEYALYDDIFKDVTVKDYTYQRTF 139 (395) T ss_pred hHHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCCC-----eEecCCccceeEeecCcceeEEEEcCceeeeee Confidence 999999999999999999999999999999999888765542 344444444443322211 11111 113457 Q ss_pred ccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 PQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 157 ~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) ++++|+|+++++ ....+|.||+..+...+.... +.|.+++.+++++.+++.. .++++.+++++.|++.+ T Consensus 140 ~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~-------~~~~~~~~~~gii~~~~~~---~~~e~~~~~~~~~~~~~ 209 (395) T protein:vir:10 140 TMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMI-------GAQLKNYQIRGILKSASSA---YDEKNIEKLQAFTNKLF 209 (395) T ss_pred ccccEEEEccCCCCcccccchHHHHHHHHHHHHH-------HHHHhcCCCceEEEeCCCC---CCHHHHHHHHHHHHHHh Confidence 788999998754 456789999999887776544 3567889999999987543 47899999999999998 Q ss_pred ccccc-cCcceecCCCceeeecCcChhhH-----HHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 236 GGSGN-AKKVALLQEGMKFKPLSMTNVDA-----ALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYT 309 (419) Q Consensus 236 ~g~~n-~g~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~ 309 (419) ++.++ ...++++++|++|++++++|.++ ||+|.+++++++||++|||||.++| ++++|.+++.+.|+++| T Consensus 210 ~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~ 285 (395) T protein:vir:10 210 NTFNKNQLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFC 285 (395) T ss_pred ccccccCcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHH Confidence 88643 23356689999999999988765 8999999999999999999999996 47889999999999999 Q ss_pred hhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc--ceeeec Q lcl|Aclame:pro 310 LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGG--DIYLSP 387 (419) Q Consensus 310 i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~gg--D~~~~~ 387 (419) |.|++.+||++|+++|+++.+.. ..++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||| |++++| T Consensus 286 l~P~~~~ie~~l~~kL~~~~~~~-~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~ 364 (395) T protein:vir:10 286 LTPLLKKIQNELNAKLITQSMYL-KDTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLIT 364 (395) T ss_pred HHHHHHHHHHHHHHhhcChhhhc-ccceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeec Confidence 99999999999999999876643 245799999999999999999999999999999999999999999875 999999 Q ss_pred cccccccccccccCC--CCCCccccccchhc Q lcl|Aclame:pro 388 MNMVDASKPQPIPMG--KTEPTKAALDEIGR 416 (419) Q Consensus 388 ~n~~~~~~~~~~~~~--~~~~~~~~~~e~~~ 416 (419) +|+++++.+...+.. +.....+.++++|- T Consensus 365 ~n~~~~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 365 KNYEKANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred cccccccccccccCcccccccCCCCCCCCCC Confidence 999998766444322 11122233333444 No 68 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=6e-76 Score=432.99 Aligned_cols=348 Identities=14% Similarity=0.188 Sum_probs=288.4 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||.+++++.. ....+|...+...+.+.++..|+.++|+++++|++||++||++||++|+. .| T Consensus 1 M~~~~~f~~r~~---~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~-------------~~ 64 (359) T protein:vir:10 1 MSILNPFERRSS---ITPNNYYPFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI-------------GN 64 (359) T ss_pred Ccccchhhcccc---CCCCcchhhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc-------------cc Confidence 999887765432 22335666666666777888899999999999999999999999999984 46 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEe----eccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRV----AGADPL 156 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~----~~~~~~ 156 (419) +..++|+.+||++||+++||+.++.+++++||+|++|.|+..|.+.+|+|++|+.|++..+.+...+.+. .....+ T Consensus 65 ~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~y~~~~~~~~~~~~~ 144 (359) T protein:vir:10 65 QVFTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDDTLTYEVNQFDDYPSAKY 144 (359) T ss_pred hHHHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCCeEEEEEEecCCceEEEE Confidence 7778888999999999999999999999999999999999999999999999999999877654322221 123457 Q ss_pred ccceEEEecCCC-----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 157 PQRLVHHVRWMS-----INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGW 231 (419) Q Consensus 157 ~~~~i~~~~~~~-----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (419) ++++|+|++.++ .++++|+||+..+..++....+++++..++|+||+.|++++++++. .+++++.+++++.| T Consensus 145 ~~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~---~l~~e~~~~~~~~~ 221 (359) T protein:vir:10 145 NASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQG---TLSSEAKDSIRKEF 221 (359) T ss_pred cccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCC---CCCHHHHHHHHHHH Confidence 888999998654 4789999999999999999999999999999999999999999753 34788999999999 Q ss_pred HHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccHHHHHHHHHHHH Q lcl|Aclame:pro 232 NAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNIEHQSLQFVIYT 309 (419) Q Consensus 232 ~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~e~~~~~~~~~~ 309 (419) ++.+++ .|+|+++++++|++|+++++++.|+|++|.+++++++||++|||||.++|..++ +++++.+++...|+..+ T Consensus 222 ~~~~~~-~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~ 300 (359) T protein:vir:10 222 EKANGG-NNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRF 300 (359) T ss_pred HHHhCc-cccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHH Confidence 877654 799999999999999999999999999999999999999999999999987543 35667777777777777 Q ss_pred hhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 310 LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK 379 (419) Q Consensus 310 i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ 379 (419) |.|++..++.+|++++. ++...+.+.|.......+.+++++|++|+||+|+++|++|+= T Consensus 301 l~p~~~~l~~~l~~~~~-----------~~~~~~~~~d~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 301 IEPLISELRIKCDSSIG-----------VDMSPITDYSNSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHHHHHHHhhhhhc-----------ccchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 77777777776666542 222222333334445557779999999999999999999985 No 69 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=1.4e-75 Score=430.93 Aligned_cols=372 Identities=14% Similarity=0.146 Sum_probs=296.7 Q ss_pred CCccchhcccccccc------cccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQ------PGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |+|++++++...... .........+++.....++..|+...|+++|+|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh--- Confidence 888877655322211 22223344555555566788899999999999999999999999999999986432 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEee-- Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVA-- 151 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~-- 151 (419) ..|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.++.. .|.+. T Consensus 80 ---------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~ 150 (392) T protein:vir:39 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD 150 (392) T ss_pred ---------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEec Confidence 346679999999999999999999999999999999999999999999999999998765433 22221 Q ss_pred c-----ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 152 G-----ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 152 ~-----~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) + ...+++++|+|+++++.++ ++|+||+..+...+.++.+++++..++|+||+.|++++++++... .++++ T Consensus 151 ~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~--~~~~~-- 226 (392) T protein:vir:39 151 DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LSDKD-- 226 (392) T ss_pred CcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC--chHHH-- Confidence 1 2357889999999988887 789999999999999999999999999999999999999986432 23333 Q ss_pred HHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQF 305 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~ 305 (419) ++.|.+.+.+..|+|+++++++|++|+++++++.|+||.|.+++++++||++|||||.++|+..+ +++.+++.++| T Consensus 227 --~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~--~~~~~~~~~~f 302 (392) T protein:vir:39 227 --KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD--QQSSIQQISGM 302 (392) T ss_pred --HHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC--cccHHHHHHHH Confidence 34566677788899999999999999999999999999999999999999999999999987543 33556778899 Q ss_pred HHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCcc Q lcl|Aclame:pro 306 VIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLE---NMPPVKGGD 382 (419) Q Consensus 306 ~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~l---Gl~p~~ggD 382 (419) +++||.|++..|+++++++|++. ++||...+.+.|.+++++.+++++++|++|+||+|+++ |+.|.+ T Consensus 303 ~~~~l~P~~~~ie~~l~~~L~~~-------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e--- 372 (392) T protein:vir:39 303 YASALNRYLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD--- 372 (392) T ss_pred HHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc--- Confidence 99999999999999999999754 56788888889999999999999999999999999987 544321 Q ss_pred eeeeccccccccccccccCCCCCC Q lcl|Aclame:pro 383 IYLSPMNMVDASKPQPIPMGKTEP 406 (419) Q Consensus 383 ~~~~~~n~~~~~~~~~~~~~~~~~ 406 (419) ....-|+.|.... +.+++.+ T Consensus 373 -~r~~e~l~~~~~G---d~~~p~p 392 (392) T protein:vir:39 373 -LPAPENTNKKTTG---QSNEPVP 392 (392) T ss_pred -cchhcCCCCCCCC---CCCCCCC Confidence 1111122111100 0011111 No 70 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=1.4e-75 Score=430.93 Aligned_cols=372 Identities=14% Similarity=0.146 Sum_probs=296.7 Q ss_pred CCccchhcccccccc------cccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQ------PGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |+|++++++...... .........+++.....++..|+...|+++|+|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh--- Confidence 888877655322211 22223344555555566788899999999999999999999999999999986432 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEee-- Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVA-- 151 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~-- 151 (419) ..|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.++.. .|.+. T Consensus 80 ---------~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~ 150 (392) T protein:vir:10 80 ---------QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFD 150 (392) T ss_pred ---------hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEec Confidence 346679999999999999999999999999999999999999999999999999998765433 22221 Q ss_pred c-----ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 152 G-----ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 152 ~-----~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) + ...+++++|+|+++++.++ ++|+||+..+...+.++.+++++..++|+||+.|++++++++... .++++ T Consensus 151 ~~~~~~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~--~~~~~-- 226 (392) T protein:vir:10 151 DPKIEPILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGL--LSDKD-- 226 (392) T ss_pred CcccceeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC--chHHH-- Confidence 1 2357889999999988887 789999999999999999999999999999999999999986432 23333 Q ss_pred HHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQF 305 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~ 305 (419) ++.|.+.+.+..|+|+++++++|++|+++++++.|+||.|.+++++++||++|||||.++|+..+ +++.+++.++| T Consensus 227 --~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~--~~~~~~~~~~f 302 (392) T protein:vir:10 227 --KASRSRSFMKRSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD--QQSSIQQISGM 302 (392) T ss_pred --HHHHHHHHhccccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC--cccHHHHHHHH Confidence 34566677788899999999999999999999999999999999999999999999999987543 33556778899 Q ss_pred HHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCcc Q lcl|Aclame:pro 306 VIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLE---NMPPVKGGD 382 (419) Q Consensus 306 ~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~l---Gl~p~~ggD 382 (419) +++||.|++..|+++++++|++. ++||...+.+.|.+++++.+++++++|++|+||+|+++ |+.|.+ T Consensus 303 ~~~~l~P~~~~ie~~l~~~L~~~-------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~e--- 372 (392) T protein:vir:10 303 YASALNRYLRPAISELEYKLSDH-------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPKD--- 372 (392) T ss_pred HHHHHHHHHHHHHHHHHHhcccc-------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCccc--- Confidence 99999999999999999999754 56788888889999999999999999999999999987 544321 Q ss_pred eeeeccccccccccccccCCCCCC Q lcl|Aclame:pro 383 IYLSPMNMVDASKPQPIPMGKTEP 406 (419) Q Consensus 383 ~~~~~~n~~~~~~~~~~~~~~~~~ 406 (419) ....-|+.|.... +.+++.+ T Consensus 373 -~r~~e~l~~~~~G---d~~~p~p 392 (392) T protein:vir:10 373 -LPAPENTNKKTTG---QSNEPVP 392 (392) T ss_pred -cchhcCCCCCCCC---CCCCCCC Confidence 1111122111100 0011111 No 71 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=4e-76 Score=433.95 Aligned_cols=365 Identities=13% Similarity=0.093 Sum_probs=281.7 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc-----e Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR-----K 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~-----~ 75 (419) |+||.+.++........... ..........++.+++|++||++||++||++|++++++++++. . T Consensus 1 M~~f~k~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~~~~ 69 (378) T protein:vir:85 1 MNLFGKVVSFSRGKLNNDTQ-----------RVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) T ss_pred CchhhhhhhhhhcccccCCc-----------ceeeeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEecccccccccc Confidence 99988764433222221111 1111233445678899999999999999999999998876543 2 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEE-eecCCCceEEEEEecCceeEEEEccceeEEEEeeccc Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFI-DRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGAD 154 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i-~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 154 (419) ....|++.++|+.+||++||+++||+.++.+++++|+||+++ .++..|.+..+++... +.. T Consensus 70 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~~~------------------~~~ 131 (378) T protein:vir:85 70 SMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLLFAND------------------KKE 131 (378) T ss_pred ccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEEecCC------------------CEE Confidence 457899999999999999999999999999999999999985 4566677666554321 122 Q ss_pred ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) +.+.++|||+.+.+.++. .+.+..+.+.+ ...+ +++.++++++.++.++.+..+++.+++++.+++. T Consensus 132 ~~~~dvih~~~~~~~~~~--~~~~~~a~~~~----------~~~~-~~~~~~g~l~~~~~l~~~~~~~~~~~~~~~~~~~ 198 (378) T protein:vir:85 132 YKPEELVRLVSPFYINED--TSILDNALASI----------QTKL-EQGKLRGLLKINAFLDIDNTQEYREKALATIKNM 198 (378) T ss_pred EcccceEEEecCcCccch--hhHHHHHHHHH----------HHHH-hcCCcceEEEeCCcCCHHHHHHHHHHHHHHHHHh Confidence 334455555544443433 33333333222 2223 4567899999988776666666777777777766 Q ss_pred hccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) .++ .|+|+++++++|++|+++++++.++++ +.++++.++||++|||||.+++ +++.+++...|+.+||.|++ T Consensus 199 ~~~-~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~------~s~~e~~~~~f~~~tL~P~~ 270 (378) T protein:vir:85 199 QEG-SSYNGLTPVDNKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILL------GTATQEQQIYFYNSTIIPLL 270 (378) T ss_pred hcc-cccccceecCCCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhc------CCchHHHHHHHHHHHHHHHH Confidence 555 478899999999999999999999996 6789999999999999999993 45678999999999999999 Q ss_pred HHHHHHHHhhccChhhhhhh-------hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSERKQY-------FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~~~~-------~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~ 387 (419) .+||++|+++||++.++... .++||.+.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++| T Consensus 271 ~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gGD~~~~~ 350 (378) T protein:vir:85 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDIYIAN 350 (378) T ss_pred HHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeec Confidence 99999999999998765322 36789999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 388 MNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) +|+++++.+...+.++++..+.+++.|+ T Consensus 351 ~N~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:85 351 LNAVAVKNLSDLQGSRKDVASTDETNNQ 378 (378) T ss_pred ccccccccchhhcCccCCCCCCCCCCCC Confidence 9999999888877666665544444444 No 72 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=7e-76 Score=432.62 Aligned_cols=366 Identities=15% Similarity=0.111 Sum_probs=286.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++++++....... .++ ..+..++.+.|+++++|++||++||+++|++||+++++. .+..| T Consensus 1 Mg~f~~l~~~~~~~~~~-----~~~------~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~-----~~~~~ 64 (376) T protein:vir:78 1 MGFFSELFKRNKEIEWM-----WDL------DFLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGE-----TSVRD 64 (376) T ss_pred CchhhhhhccCCccccc-----cch------hhccccchhhhhhhHHHHHHHHHHHHhhcccceeecccc-----ccccc Confidence 99987766543322211 111 123357788899999999999999999999999998643 34468 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeecccccccce Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQRL 160 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (419) ++.++|+.+||++||+++||+.++.+++++|++|+++.|+..|.+.+++|+.+..+.......... ..+.....++.++ T Consensus 65 ~l~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e 143 (376) T protein:vir:78 65 KLYYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDVFEGVTV-KDYRYNRNFSMDD 143 (376) T ss_pred hHHHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeeeeeeeee-ecceeeeeecccc Confidence 999999999999999999999999999999999999999999999999999998776544332221 2222245578899 Q ss_pred EEEecCCCCCCcccccHH-HHHHHHHHHHHHHHHHHHHHH-HccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 161 VHHVRWMSINGYTGLSPV-LLHANAIGHAQAIQQYAGKSF-MNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGS 238 (419) Q Consensus 161 i~~~~~~~~~~~~G~s~~-~~~~~~i~~~~~~~~~~~~~~-~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (419) |+|++++..++....+++ ..+...+. .....++ .++.++.++++.+ ...++++.+++++.|++.++|. T Consensus 144 vih~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~e~~~~~~~~~~~~~~g~ 213 (376) T protein:vir:78 144 VIFLEYGNERLSAFTDGMFEDYGELFG------KMIRAQMRNFQIRGAVNFKMA----GVADKDKQTKLQEYIDKVYASF 213 (376) T ss_pred EEEeccCCCCchhhhhHHHHHHHHHHH------HHHHHHHhcCCCceeEEEccC----CCCCHHHHHHHHHHHHHHhccc Confidence 999997665543333222 22221111 1122222 3333333334333 3347788999999999999986 Q ss_pred c-ccCcceecCCCceeeecCcChhhH-----HHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhH Q lcl|Aclame:pro 239 G-NAKKVALLQEGMKFKPLSMTNVDA-----ALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLP 312 (419) Q Consensus 239 ~-n~g~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P 312 (419) . ++++++++++|++|++++++|.|+ ||.|.+++++++||++|||||.++| ++++|.|++.+.|+++||.| T Consensus 214 ~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~----~~~s~~e~~~~~f~~~~l~P 289 (376) T protein:vir:78 214 NNNEIAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLH----GDMADLSNNMKAYMEYCIDP 289 (376) T ss_pred cccCcceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhC----CCCCCHHHHHHHHHHHHHHH Confidence 4 556688899999999999988664 9999999999999999999999996 37899999999999999999 Q ss_pred HHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc--ceeeecccc Q lcl|Aclame:pro 313 WVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGG--DIYLSPMNM 390 (419) Q Consensus 313 ~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~gg--D~~~~~~n~ 390 (419) ++.+||++++++||++.+ ..+.|+++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||| |++++|+|+ T Consensus 290 ~~~~ie~~l~~kll~~~~---~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d~~~~~~n~ 366 (376) T protein:vir:78 290 LTKKLEDELNAKLFTFSE---FLAGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPELDKYLITKNY 366 (376) T ss_pred HHHHHHHHHHhhhCCccc---ceecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccCc Confidence 999999999999998754 457788888999999999999999999999999999999999999876 999999999 Q ss_pred cccccccccc Q lcl|Aclame:pro 391 VDASKPQPIP 400 (419) Q Consensus 391 ~~~~~~~~~~ 400 (419) +|++..++.. T Consensus 367 ~~~~~~~e~g 376 (376) T protein:vir:78 367 QSADEGGEDG 376 (376) T ss_pred eehhccccCC Confidence 9987543221 No 73 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=3.7e-75 Score=428.65 Aligned_cols=409 Identities=13% Similarity=0.138 Sum_probs=289.0 Q ss_pred CCccchhccc-----ccc---cccccchHHHHhhcCCCccccccc----------CHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MFFSRQLLSN-----LGQ---TQPGSGGWVSALLGSARSEAGQVV----------TPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~f~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) =.|++....+ +.. ......+.+..+ .+.+.....+. ....+..+|+|++||++||+.||++ T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~-~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~vA~~ 110 (576) T protein:vir:96 32 QANIRNIEEKSKELNKSLYGKQQAYAEPFLEVM-DTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRSNQVAMY 110 (576) T ss_pred hHHHHHhhhhhhhhccccCCccchhhcceeeee-ecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHHHHHHhh Confidence 1111121110 000 011111111111 11111111111 1133446899999999999999973 Q ss_pred -----------CeeEeeecCCcc----eeeccc----hHHHHhhcccccc-CCHHHHHHHHHHHHHHcCCeeEEEeec-- Q lcl|Aclame:pro 63 -----------PVELYERSGDDR----KPATDH----PLYSILKYEPNPW-QTPFEYQEQSQVAVGLRGNSYSFIDRD-- 120 (419) Q Consensus 63 -----------~~~~~~~~~~~~----~~~~~~----~~~~lL~~~pn~~-~s~~~f~~~~~~~~l~~G~~~~~i~~~-- 120 (419) +|.+..+..++. .....+ .+..++ ..|||. +|+.+||+.++.+++++||+|++++++ T Consensus 111 ~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~~rd 189 (576) T protein:vir:96 111 CQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTG-RDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVFNKK 189 (576) T ss_pred hhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhcc-CCCCCccccHHHHHHHHHHHHHhcCCeEEEEEEecC Confidence 344433333321 111222 233333 234444 689999999999999999999998754 Q ss_pred CCCceEEEEEecCceeEEEEccceeEEEE------e-ecc--cccc-cceEEEecCCCCC---CcccccHHHHHHHHHHH Q lcl|Aclame:pro 121 QDGVIQGLYPLDNEAVTVMKGPDLKPMYR------V-AGA--DPLP-QRLVHHVRWMSIN---GYTGLSPVLLHANAIGH 187 (419) Q Consensus 121 ~~G~~~~l~~~~~~~v~~~~~~~~~~~~~------~-~~~--~~~~-~~~i~~~~~~~~~---~~~G~s~~~~~~~~i~~ 187 (419) ..|.+.+|+|++|++|++..+.++...++ . .+. ..++ .++|||++++..+ +.+|+||+.++...+.+ T Consensus 190 ~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~i~~ 269 (576) T protein:vir:96 190 NATTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQFIA 269 (576) T ss_pred CCCceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHHHHH Confidence 46889999999999999999887653221 1 111 1233 4556676665554 67899999999999999 Q ss_pred HHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcc-eecCCCceeeecCcChhhHHHH Q lcl|Aclame:pro 188 AQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKV-ALLQEGMKFKPLSMTNVDAALI 266 (419) Q Consensus 188 ~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~-~vl~~g~~~~~l~~~~~d~~~~ 266 (419) ..++++++.++|+||++|+++|++++.. .+++++++++++.|++.++|..|+|++ +|+++|++|+++++++.|+||+ T Consensus 270 ~~~~~~~~~~~f~Ng~~p~giL~~~~~~--~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qfl 347 (576) T protein:vir:96 270 YNNTETFNDRFFSHGGTTRGILQIKSEQ--QQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQFE 347 (576) T ss_pred HHHHHHHHHHHHhccCCCceEEEeCCCC--CCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhHHHH Confidence 9999999999999999999999997532 357899999999999999999999995 8899999999999999999999 Q ss_pred HHHHHHHHHHHHHhcCCHHHcccccCc-----------ccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhh Q lcl|Aclame:pro 267 DALRLSALDIARIYKIPAHMVNELERA-----------TFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYF 335 (419) Q Consensus 267 e~~~~~~~~Ia~~fgvpp~~~g~~~~~-----------~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~ 335 (419) |.+++++++||++|||||.++|..+.+ +++|+|++.+.|+++||.|++..||++|+++|++..+ ..++ T Consensus 348 e~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~-~~~~ 426 (576) T protein:vir:96 348 KWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYS-DKYV 426 (576) T ss_pred HHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc-CceE Confidence 999999999999999999999986543 7899999999999999999999999999999987543 3333 Q ss_pred hhhhhhhhhhccHHHHHHHHHHH--HhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 336 IEYNLAGLLRGDQSSRYAAYAVG--RQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 336 ~~fd~~~~~~~d~~~~~~~~~~~--~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) ++ +++.|.+++++.++.. +.+|+||+||+|+++||||+||||+++.|.++.+.+.+......+.+..+...++ T Consensus 427 ~~-----f~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 501 (576) T protein:vir:96 427 FQ-----FVGGDTKSELDKIKILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERFDM 501 (576) T ss_pred EE-----eccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCccccccccc Confidence 33 3456777777766644 5679999999999999999999999999999887765433222222211111111 Q ss_pred hhcccC Q lcl|Aclame:pro 414 IGRILS 419 (419) Q Consensus 414 ~~~~~~ 419 (419) ..+.+. T Consensus 502 ~~~~~~ 507 (576) T protein:vir:96 502 IQQFLN 507 (576) T ss_pred cccccC Confidence 100011 No 74 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=1.7e-75 Score=430.52 Aligned_cols=383 Identities=11% Similarity=0.080 Sum_probs=283.3 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+|+.+++..++......... ... .......++.+.++++++|++||++||+++|++||+++++++ ...| T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~-----~~~~ 70 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQRTLNLT--DTV---WCSIPSEKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGE-----EVRK 70 (395) T ss_pred CchHHHHHhhhcccccccccc--cch---hhccccccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCc-----cccc Confidence 999888877665443322111 111 112234567788999999999999999999999999987533 3458 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEc-cceeEEEEe---eccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKG-PDLKPMYRV---AGADPL 156 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~-~~~~~~~~~---~~~~~~ 156 (419) ++.++|+.+||++||+++||+.++.+++++||||+++.++..+ +.....+..... ...+..... .....+ T Consensus 71 ~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 144 (395) T protein:vir:40 71 KNWYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYIY------VADSFTKNDKSLYENTYTEVTLKDLTLKKEF 144 (395) T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCcee------ecCCccccccccccceeeeeeecCceeeeee Confidence 9999999999999999999999999999999999999876532 211111111100 111111111 113457 Q ss_pred ccceEEEecCCCCCCcccccHH-HHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 PQRLVHHVRWMSINGYTGLSPV-LLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 157 ~~~~i~~~~~~~~~~~~G~s~~-~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) ++++|+|+++++..+....+.+ ..+...+.... ....+.++ +++.+.++.. ...++++.+++++.|++++ T Consensus 145 ~~~evih~r~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~--~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 215 (395) T protein:vir:40 145 KESEVLHLTLNNESIKSIIDGFYLLYGDLLTAAV-----NKYKKLNS--RKIIVKLKAM--FGQTPEAEEKLRLMLSERM 215 (395) T ss_pred ccccEEEeecCCCCccccchhHHHHHHHHHHHHH-----HHHHhcCC--CCceEEEecc--cCCCHHHHHHHHHHHHHHH Confidence 7889999997665443333332 33332222211 22223344 4444444322 2346788999999999998 Q ss_pred ccc-cccCcceecCCCceeeecCcChhhHHHHHHHHHHH---HHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhh Q lcl|Aclame:pro 236 GGS-GNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSA---LDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLL 311 (419) Q Consensus 236 ~g~-~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~---~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~ 311 (419) .+. .++++++++++|++|+++++++.|+|++|.++++. ++||++|||||.++| ++++|.+++...|+++||. T Consensus 216 ~~~~~~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~----~~~sn~e~~~~~f~~~~L~ 291 (395) T protein:vir:40 216 KKFLAEGDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK----GDTVGLSEQVNSFLMFSIN 291 (395) T ss_pred HHhhccCCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCcCHHHHHHHHHHHHHH Confidence 874 57888999999999999999999999999998875 799999999999996 4688999999999999999 Q ss_pred HHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--cceeeecc Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG--GDIYLSPM 388 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g--gD~~~~~~ 388 (419) |++.+||++++++||++.++ .+++++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+++ ||++++|+ T Consensus 292 P~~~~ie~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~ 371 (395) T protein:vir:40 292 PIAEMFTDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTK 371 (395) T ss_pred HHHHHHHHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeecc Confidence 99999999999999998775 4678999999999999999999999999999999999999999999954 99999999 Q ss_pred ccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 389 NMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 389 n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) |+++++.......+..+++ ++++. T Consensus 372 n~~~~~~~~~~~kgge~~~----~~~~~ 395 (395) T protein:vir:40 372 NYAPLGENEEDLKGGDINE----NKGDS 395 (395) T ss_pred ccccccccccccCCCCCCC----CcCCC Confidence 9999987655432222221 12222 No 75 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=6.4e-75 Score=427.35 Aligned_cols=365 Identities=12% Similarity=0.068 Sum_probs=287.4 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc-----e Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR-----K 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~-----~ 75 (419) |+++.++++.+........ ..+...+....+++.++|++||++||++||++|+++++..+.+. . T Consensus 1 M~if~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~~~~ 69 (378) T protein:vir:94 1 MNLFGKVVSFSRGKLNNDT-----------QRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSDTLI 69 (378) T ss_pred CchhHHhHhhhhcccccCc-----------ceeeeeecchhhhhhHHHHHHHHHHHHhHhhCceeeeeeccccccccccc Confidence 9988877653322222111 11111233445678889999999999999999999988765543 2 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEE-eecCCCceEEEEEecCceeEEEEccceeEEEEeeccc Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFI-DRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGAD 154 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i-~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 154 (419) ....|++.++|+.+||++||+++||+.++.++++.|+||+++ .++..|.+..+++.. +.. T Consensus 70 ~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~~-------------------~~~ 130 (378) T protein:vir:94 70 SMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFAN-------------------DKK 130 (378) T ss_pred ccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEec-------------------CcE Confidence 456799999999999999999999999999999999999985 456667776665532 223 Q ss_pred ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK 234 (419) Q Consensus 155 ~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (419) .+++++|+|++.+... ..+.+++..+.+.+. ..++ ++.++++++.++.++.+..+++.+++++.|++. T Consensus 131 ~~~~~dvih~~~~~~~-~~~~~~~~~~~~~~~----------~~~~-~~~~~g~l~~~~~l~~~~~~~~~e~~~~~~~~~ 198 (378) T protein:vir:94 131 EYKPEELVRLTSPFYI-NEDTSILDNALASIQ----------TKLE-QGKLRGLLKINAFLDIDNTQEYREKALATIKNM 198 (378) T ss_pred EechhceeeecCcCCc-ccchhHHHHHHHHHH----------HHHh-hCCcccceeeCCcCCHHHHHHHHHHHHHHHHHh Confidence 4567788888843322 123455555443332 2222 457889999998887776777888888888877 Q ss_pred hccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHH Q lcl|Aclame:pro 235 FGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWV 314 (419) Q Consensus 235 ~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~ 314 (419) +.+. |+|+++++++|++|+++++++.++++ +.++++.++||++|||||.+++ ++..+++..+|+++||.|++ T Consensus 199 ~~~~-n~~~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~------g~~~e~~~~~f~~~tl~P~~ 270 (378) T protein:vir:94 199 QEGS-SYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILL------GTATQEQQIYFYNSTIIPLL 270 (378) T ss_pred hccc-ccccceeccCCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhc------CCchHHHHHHHHHHHHHHHH Confidence 6665 66889999999999999999999996 6689999999999999999994 34458899999999999999 Q ss_pred HHHHHHHHhhccChhhhhhh-------hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Q lcl|Aclame:pro 315 KRHEQAKTRDLLLPSERKQY-------FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSP 387 (419) Q Consensus 315 ~~i~~~l~~~ll~~~~~~~~-------~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~ 387 (419) .+||++|+++||++.++... .+.||.+.+++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++| T Consensus 271 ~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~ggd~~~~~ 350 (378) T protein:vir:94 271 IQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGGDVYIAN 350 (378) T ss_pred HHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeec Confidence 99999999999998765322 36799999999999999999999999999999999999999999999999999 Q ss_pred cccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 388 MNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) +|+++++.+...+.++++..+.+++.|+ T Consensus 351 ~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 351 LNAVAVKNLSDLQGNRKDVTSTDETNNQ 378 (378) T ss_pred ccccchhcchhcccccCCCCCCCCCCCC Confidence 9999999888877766665544444444 No 76 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=4e-74 Score=422.97 Aligned_cols=409 Identities=13% Similarity=0.137 Sum_probs=295.9 Q ss_pred CC-ccchhcccccccccccchHHHH--hhcCCC---cccccccC----HHHHhccHHHHHHHHHHHHhhcc--------- Q lcl|Aclame:pro 1 MF-FSRQLLSNLGQTQPGSGGWVSA--LLGSAR---SEAGQVVT----PASALSLTVLQNCVTLLAESIAQ--------- 61 (419) Q Consensus 1 M~-f~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~----~~~~~~~~~v~~~i~~ia~~ia~--------- 61 (419) |+ +..+.+.++... .+.+++.. ...+.. +......+ ...+-.++++.+||+++++.||. T Consensus 42 ~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~ 119 (563) T protein:vir:95 42 EYQDLTKSLYGQQQA--YAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSE 119 (563) T ss_pred hHHHHHhhhccCCCc--chhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhc Confidence 43 333332222222 12233321 111111 11111111 22334588899999999999885 Q ss_pred ----CCeeEeeecCCcce--eeccchHHHHhh-c--cccc-cCCHHHHHHHHHHHHHHcCCeeEEEe--ecCCCceEEEE Q lcl|Aclame:pro 62 ----LPVELYERSGDDRK--PATDHPLYSILK-Y--EPNP-WQTPFEYQEQSQVAVGLRGNSYSFID--RDQDGVIQGLY 129 (419) Q Consensus 62 ----~~~~~~~~~~~~~~--~~~~~~~~~lL~-~--~pn~-~~s~~~f~~~~~~~~l~~G~~~~~i~--~~~~G~~~~l~ 129 (419) +|++++.+...+.. ....|++..+|. . .||| .+|+.+||+.++.+++++|++|+++. |+..|++.+|| T Consensus 120 ~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~ 199 (563) T protein:vir:95 120 KGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFI 199 (563) T ss_pred ccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEE Confidence 57777665544322 223355544442 1 2223 36889999999999999999999865 77789999999 Q ss_pred EecCceeEEEEccceeEE-------EEeecc---cccccceEEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 PLDNEAVTVMKGPDLKPM-------YRVAGA---DPLPQRLVHHVRWMSIN---GYTGLSPVLLHANAIGHAQAIQQYAG 196 (419) Q Consensus 130 ~~~~~~v~~~~~~~~~~~-------~~~~~~---~~~~~~~i~~~~~~~~~---~~~G~s~~~~~~~~i~~~~~~~~~~~ 196 (419) |++|++|++..+.++... +...+. .+...++|||+++++.+ +.+|+||+..+...+.+..++++++. T Consensus 200 pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~ 279 (563) T protein:vir:95 200 AVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFND 279 (563) T ss_pred EeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHH Confidence 999999999888775432 222222 23345667788876655 78899999999999999999999999 Q ss_pred HHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcc-eecCCCceeeecCcChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 197 KSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKV-ALLQEGMKFKPLSMTNVDAALIDALRLSALD 275 (419) Q Consensus 197 ~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~-~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 275 (419) ++|+||++|+++|++++. ..+++++++++++.|++.++|..|+|++ +++++|++|+++++++.|+||+|.+++++++ T Consensus 280 ~~f~ng~~p~giL~~~~~--~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~ 357 (563) T protein:vir:95 280 RFFSHGGTTRGILQIRSD--QQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINI 357 (563) T ss_pred HHHHccCCCceEEEeCCC--CCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHH Confidence 999999999999999753 2357899999999999999999999996 7899999999999999999999999999999 Q ss_pred HHHHhcCCHHHcccccCc-----------ccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 276 IARIYKIPAHMVNELERA-----------TFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLL 344 (419) Q Consensus 276 Ia~~fgvpp~~~g~~~~~-----------~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~ 344 (419) ||++|||||.++|..+.+ +++|.+++.+.|+++||.|++..||++|+++|++..+ ..++++ ++ T Consensus 358 Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~-~~~~~~-----f~ 431 (563) T protein:vir:95 358 ISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG-DKYTFQ-----FV 431 (563) T ss_pred HHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc-cccEEE-----ec Confidence 999999999999986644 5579999999999999999999999999999987543 233333 45 Q ss_pred hccHHHHHHHHHH--HHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCC------------------- Q lcl|Aclame:pro 345 RGDQSSRYAAYAV--GRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGK------------------- 403 (419) Q Consensus 345 ~~d~~~~~~~~~~--~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~------------------- 403 (419) +.|.+++++.+.. ++++|+||+||+|+++||+|+||||+++.|.++++.+...+..... T Consensus 432 r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (563) T protein:vir:95 432 GGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDN 511 (563) T ss_pred cCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCC Confidence 6677888776654 5889999999999999999999999999999887665432211100 Q ss_pred ----------CCCccccccchhcccC Q lcl|Aclame:pro 404 ----------TEPTKAALDEIGRILS 419 (419) Q Consensus 404 ----------~~~~~~~~~e~~~~~~ 419 (419) +.+++...++.+++=+ T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (563) T protein:vir:95 512 DDSEEGQSTDSSNDDKEIGTDAQIKG 537 (563) T ss_pred CCCCCCCCCCCCCCcccccccccccc Confidence 0001111111122211 No 77 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=4e-74 Score=422.97 Aligned_cols=409 Identities=13% Similarity=0.137 Sum_probs=295.9 Q ss_pred CC-ccchhcccccccccccchHHHH--hhcCCC---cccccccC----HHHHhccHHHHHHHHHHHHhhcc--------- Q lcl|Aclame:pro 1 MF-FSRQLLSNLGQTQPGSGGWVSA--LLGSAR---SEAGQVVT----PASALSLTVLQNCVTLLAESIAQ--------- 61 (419) Q Consensus 1 M~-f~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~----~~~~~~~~~v~~~i~~ia~~ia~--------- 61 (419) |+ +..+.+.++... .+.+++.. ...+.. +......+ ...+-.++++.+||+++++.||. T Consensus 42 ~~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA~~~~~~~~~~ 119 (563) T protein:vir:99 42 EYQDLTKSLYGQQQA--YAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVAMYCQPARYSE 119 (563) T ss_pred hHHHHHhhhccCCCc--chhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhhhhhc Confidence 43 333332222222 12233321 111111 11111111 22334588899999999999885 Q ss_pred ----CCeeEeeecCCcce--eeccchHHHHhh-c--cccc-cCCHHHHHHHHHHHHHHcCCeeEEEe--ecCCCceEEEE Q lcl|Aclame:pro 62 ----LPVELYERSGDDRK--PATDHPLYSILK-Y--EPNP-WQTPFEYQEQSQVAVGLRGNSYSFID--RDQDGVIQGLY 129 (419) Q Consensus 62 ----~~~~~~~~~~~~~~--~~~~~~~~~lL~-~--~pn~-~~s~~~f~~~~~~~~l~~G~~~~~i~--~~~~G~~~~l~ 129 (419) +|++++.+...+.. ....|++..+|. . .||| .+|+.+||+.++.+++++|++|+++. |+..|++.+|| T Consensus 120 ~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~rd~~G~~~~L~ 199 (563) T protein:vir:99 120 KGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKFI 199 (563) T ss_pred ccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEecCCCceEEEE Confidence 57777665544322 223355544442 1 2223 36889999999999999999999865 77789999999 Q ss_pred EecCceeEEEEccceeEE-------EEeecc---cccccceEEEecCCCCC---CcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 PLDNEAVTVMKGPDLKPM-------YRVAGA---DPLPQRLVHHVRWMSIN---GYTGLSPVLLHANAIGHAQAIQQYAG 196 (419) Q Consensus 130 ~~~~~~v~~~~~~~~~~~-------~~~~~~---~~~~~~~i~~~~~~~~~---~~~G~s~~~~~~~~i~~~~~~~~~~~ 196 (419) |++|++|++..+.++... +...+. .+...++|||+++++.+ +.+|+||+..+...+.+..++++++. T Consensus 200 pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~~~~~~~~~~~ 279 (563) T protein:vir:99 200 AVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFIAYNNTESFND 279 (563) T ss_pred EeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHHHHHHHHHHHH Confidence 999999999888775432 222222 23345667788876655 78899999999999999999999999 Q ss_pred HHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcc-eecCCCceeeecCcChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 197 KSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKV-ALLQEGMKFKPLSMTNVDAALIDALRLSALD 275 (419) Q Consensus 197 ~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~-~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 275 (419) ++|+||++|+++|++++. ..+++++++++++.|++.++|..|+|++ +++++|++|+++++++.|+||+|.+++++++ T Consensus 280 ~~f~ng~~p~giL~~~~~--~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle~~~~~~~~ 357 (563) T protein:vir:99 280 RFFSHGGTTRGILQIRSD--QQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEKWLNYLINI 357 (563) T ss_pred HHHHccCCCceEEEeCCC--CCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHHHHHHHHHH Confidence 999999999999999753 2357899999999999999999999996 7899999999999999999999999999999 Q ss_pred HHHHhcCCHHHcccccCc-----------ccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 276 IARIYKIPAHMVNELERA-----------TFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLL 344 (419) Q Consensus 276 Ia~~fgvpp~~~g~~~~~-----------~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~ 344 (419) ||++|||||.++|..+.+ +++|.+++.+.|+++||.|++..||++|+++|++..+ ..++++ ++ T Consensus 358 Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~-~~~~~~-----f~ 431 (563) T protein:vir:99 358 ISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG-DKYTFQ-----FV 431 (563) T ss_pred HHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc-cccEEE-----ec Confidence 999999999999986644 5579999999999999999999999999999987543 233333 45 Q ss_pred hccHHHHHHHHHH--HHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCC------------------- Q lcl|Aclame:pro 345 RGDQSSRYAAYAV--GRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGK------------------- 403 (419) Q Consensus 345 ~~d~~~~~~~~~~--~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~------------------- 403 (419) +.|.+++++.+.. ++++|+||+||+|+++||+|+||||+++.|.++++.+...+..... T Consensus 432 r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (563) T protein:vir:99 432 GGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSLLEGDN 511 (563) T ss_pred cCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhhcccccCCCC Confidence 6677888776654 5889999999999999999999999999999887665432211100 Q ss_pred ----------CCCccccccchhcccC Q lcl|Aclame:pro 404 ----------TEPTKAALDEIGRILS 419 (419) Q Consensus 404 ----------~~~~~~~~~e~~~~~~ 419 (419) +.+++...++.+++=+ T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (563) T protein:vir:99 512 DDSEEGQSTDSSNDDKEIGTDAQIKG 537 (563) T ss_pred CCCCCCCCCCCCCCcccccccccccc Confidence 0001111111122211 No 78 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=2.1e-74 Score=424.52 Aligned_cols=412 Identities=11% Similarity=0.067 Sum_probs=295.2 Q ss_pred CCccc---hhcccccccccccchHH-HHhhc-CCC-ccccccc-----CHHHHhccHHHHHHHHHHHHhhccC------- Q lcl|Aclame:pro 1 MFFSR---QLLSNLGQTQPGSGGWV-SALLG-SAR-SEAGQVV-----TPASALSLTVLQNCVTLLAESIAQL------- 62 (419) Q Consensus 1 M~f~~---~~~~~~~~~~~~~~~~~-~~~~~-~~~-~~~~~~~-----~~~~~~~~~~v~~~i~~ia~~ia~~------- 62 (419) |.-.. ..+..-+.....+..-+ ..-+. +.. ..+..+. ....+..+|+|.+||++||+.||.+ T Consensus 31 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~npiv~~~I~~~a~~ia~~~~~~~~~ 110 (547) T protein:vir:63 31 IQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVLKKFGGNIILNAIINTRSNQVSMYCKPARHS 110 (547) T ss_pred hhhhhHHHHHHhhcccchhhhchhhheeecccccccCCccCChhHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhhhhh Confidence 43221 11111011110011101 11111 111 1111111 1234567899999999999999964 Q ss_pred ----CeeEeeecCCc----ceeeccchHHHHhhccccccC-----CHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEE Q lcl|Aclame:pro 63 ----PVELYERSGDD----RKPATDHPLYSILKYEPNPWQ-----TPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLY 129 (419) Q Consensus 63 ----~~~~~~~~~~~----~~~~~~~~~~~lL~~~pn~~~-----s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~ 129 (419) +|.+.-+..+. ......+.+..+|+ +||+++ |+.+||+.++.+++++||+|+++.|+..|.+.+|| T Consensus 111 ~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~-~pn~~~~p~~~s~~~f~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~ 189 (547) T protein:vir:63 111 EKGVGFEVRLKDLDKKPTSHDEATIKRIESFIE-KTGVDNDINRDSFSSFVKKIVRDTYMYDQVNFEKVFNRNQSMVRFV 189 (547) T ss_pred ccCCCceeEecccccccChhhHHHHHHHHHHHH-hhCCCCCCccchHHHHHHHHHHHHHhhCCEEEEEEECCCCcEEEEE Confidence 23332221111 11222245555664 787764 88999999999999999999999999999999999 Q ss_pred EecCceeEEEEccceeE-----EE-E-eecc--cccccceEEEecCCCCC----CcccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 130 PLDNEAVTVMKGPDLKP-----MY-R-VAGA--DPLPQRLVHHVRWMSIN----GYTGLSPVLLHANAIGHAQAIQQYAG 196 (419) Q Consensus 130 ~~~~~~v~~~~~~~~~~-----~~-~-~~~~--~~~~~~~i~~~~~~~~~----~~~G~s~~~~~~~~i~~~~~~~~~~~ 196 (419) |++|++|++..+.++.. .| + ..+. ..+++++|+|+++++.. +.+|+||+..+...+..+.++++++. T Consensus 190 ~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~ 269 (547) T protein:vir:63 190 AKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRSDIYATGYGYPELEIALKQFIAHENTEAFND 269 (547) T ss_pred EecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCCCcccccccccHHHHHHHHHHHHHHHHHHHH Confidence 99999999987766532 12 1 2222 34678889999876543 56799999999999999999999999 Q ss_pred HHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec-CCCceeeecCcChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 197 KSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL-QEGMKFKPLSMTNVDAALIDALRLSALD 275 (419) Q Consensus 197 ~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 275 (419) ++|+||++|+++|.+++. ..+++++++++++.|++.++|.+|+|+++++ ++|++|+++++++.|+||+|.+++++++ T Consensus 270 ~~f~Ng~~p~giL~~~~~--~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~~~g~~~~~l~~~~~d~qfle~~~~~~~~ 347 (547) T protein:vir:63 270 RFFSHGGTTRGILQIKAA--QQQSQHALEIFKREWKNSLSGINGSWQIPVVSAEDVKFVNMTPSARDMEFEKWLNYLINV 347 (547) T ss_pred HHHHcCCCcceEEEecCC--CCCCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEEcCCChhHHHHHHHHHHHHHH Confidence 999999999999998753 2357899999999999999999999998665 6889999999999999999999999999 Q ss_pred HHHHhcCCHHHcccccC----------cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 276 IARIYKIPAHMVNELER----------ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLR 345 (419) Q Consensus 276 Ia~~fgvpp~~~g~~~~----------~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~ 345 (419) ||++|||||.+||..+. .+++|++++...|+++||.|++..||++|+++|++... ..++ |+++.+.. T Consensus 348 Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~ie~~ln~~L~~~~~-~~~~--~~f~~~~~ 424 (547) T protein:vir:63 348 ISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFIEDFINKHIVAEFG-DKYT--FQFVGGDI 424 (547) T ss_pred HHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CceE--EEeecccc Confidence 99999999999997443 37899999999999999999999999999999986543 3344 44456666 Q ss_pred ccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-CCCcceeeeccccccccccccccCCCCCC--------------cccc Q lcl|Aclame:pro 346 GDQSSRYAAYAVGRQWGWLSINDIRRLENMPP-VKGGDIYLSPMNMVDASKPQPIPMGKTEP--------------TKAA 410 (419) Q Consensus 346 ~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p-~~ggD~~~~~~n~~~~~~~~~~~~~~~~~--------------~~~~ 410 (419) .+..++++++. ++.+|+||+||+|+++||+| +||||+++.|.++.+.+...+.+..+.+. ..+. T Consensus 425 ~~~~~~~~~~~-~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (547) T protein:vir:63 425 KSELESVKILA-EKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQLMQQEQFEHEKQQSNLQMLQEQTGNRVST 503 (547) T ss_pred ccHHHHHHHHH-HHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccccccccCCccccchhhccccccccCCCCCC Confidence 77777777654 67889999999999999998 79999999998887665432211110000 0000 Q ss_pred ccchhcccC Q lcl|Aclame:pro 411 LDEIGRILS 419 (419) Q Consensus 411 ~~e~~~~~~ 419 (419) +.+.+...+ T Consensus 504 ~~~~~~~~~ 512 (547) T protein:vir:63 504 DVEDIPDGK 512 (547) T ss_pred CCCCCCCCc Confidence 011111111 No 79 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=2e-74 Score=424.64 Aligned_cols=377 Identities=10% Similarity=0.016 Sum_probs=279.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+|++++++......+... ... ....++.+.|+++++|++||++||++||++||++++++++ ....| T Consensus 1 Mgl~d~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~---~~~~~ 67 (395) T protein:vir:96 1 MGILDFFSFKKSGTLSDDD--SGS--------TTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKL---TENQK 67 (395) T ss_pred CcchhhhcCCCCccccccc--ccc--------chhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCcc---ccccc Confidence 9999888776544333211 111 1123567889999999999999999999999999876433 34578 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEee---cccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVA---GADPLP 157 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~---~~~~~~ 157 (419) ++.++|+.+||++||+++||+.++.+++++|+||+++.|+..+.+...++..... ........... ....++ T Consensus 68 ~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~ 142 (395) T protein:vir:96 68 DWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIYVADAFTQDKKL-----SGNKFKVSRVQGQTYEKIFT 142 (395) T ss_pred hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCceecCCcccccccc-----ccceeeeeeeccceeeeEec Confidence 9999999999999999999999999999999999999988654444333322111 11111111111 134577 Q ss_pred cceEEEecCCCCCC-cccccHHHHHHHH------HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHH Q lcl|Aclame:pro 158 QRLVHHVRWMSING-YTGLSPVLLHANA------IGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG 230 (419) Q Consensus 158 ~~~i~~~~~~~~~~-~~G~s~~~~~~~~------i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (419) +++|+|+++++.++ .++.+++..+... +.....+.++..+.+.+|+.+.+++..++.. .++..+++.++ T Consensus 143 ~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 218 (395) T protein:vir:96 143 FDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGR----QPKSDKDFFKR 218 (395) T ss_pred cCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchh----hHHHHHHHHHH Confidence 88999998766543 2333322222222 2223345578889999999999998876432 33444444444 Q ss_pred HHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHH------HHHHHHHhcCCHHHcccccCcccccHHHHHHH Q lcl|Aclame:pro 231 WNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLS------ALDIARIYKIPAHMVNELERATFSNIEHQSLQ 304 (419) Q Consensus 231 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~------~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~ 304 (419) +.+... .++++++++++|++|+++++++.|+|+.|.+++. .++||++|||||.++| ++++|.|++.+. T Consensus 219 ~~~~~~--~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~----~~~sn~e~~~~~ 292 (395) T protein:vir:96 219 TIEKIR--TESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH----GDIADNQKNYEL 292 (395) T ss_pred HHHHhh--cCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCccHHHHHHH Confidence 433332 2456688899999999999999999999888776 5899999999999996 478999999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--cc Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG--GD 382 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g--gD 382 (419) |+++||.|++.+||++++++||++.+... .+.|+++.+++.|.+++++.+.+++++|++|+||+|+++|+||+|| || T Consensus 293 f~~~~L~P~~~~ie~~l~~~Ll~~~e~~~-~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD 371 (395) T protein:vir:96 293 LLEGPIESLITNIVDGLEYAIFDKSETLE-GSFIKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGK 371 (395) T ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhhcC-ceeEeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCc Confidence 99999999999999999999999876532 2457788999999999999999999999999999999999999976 99 Q ss_pred eeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 383 IYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 383 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) ++++|+|++++++.+.+ ++.++|+ T Consensus 372 ~~~~~~N~~~~~~~gge--------~~~~~~~ 395 (395) T protein:vir:96 372 VLYMTKNYESVLERGGE--------VDEEVET 395 (395) T ss_pred eeeecccceechhccCC--------CCCCCCC Confidence 99999999998753211 1112222 No 80 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=1.5e-73 Score=419.78 Aligned_cols=363 Identities=15% Similarity=0.161 Sum_probs=298.6 Q ss_pred CCccchhccc-ccccccccchHHHHhhc---CCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee Q lcl|Aclame:pro 1 MFFSRQLLSN-LGQTQPGSGGWVSALLG---SARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) Q Consensus 1 M~f~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~ 76 (419) |+||++.... ...... ..++..+.. ...+.++..++.++|+++++|++||++||+++|++|++++++.. T Consensus 1 Mglf~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~~~~~~~----- 73 (384) T protein:vir:49 1 MPIFNITNLATESPPSN--QDSFFDITDPEFLDALNGSEWVSAETALKNSDLFSIISQLSNDLATAKITTSRKQL----- 73 (384) T ss_pred CccccccccCccccccc--chhhccccchhhcccccCCceechhhhhccHHHHHHHHHHHHHHhhCceeeecchh----- Confidence 9988654332 222221 222222211 11234567789999999999999999999999999999986433 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEe--ec- Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRV--AG- 152 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~--~~- 152 (419) ..|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|++|++..+.++.. .|.+ .+ T Consensus 74 -------~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~ 146 (384) T protein:vir:49 74 -------QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDP 146 (384) T ss_pred -------hhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCc Confidence 246789999999999999999999999999999999999999999999999999987655432 2222 11 Q ss_pred ----ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHH Q lcl|Aclame:pro 153 ----ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRI 227 (419) Q Consensus 153 ----~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (419) ...+++++|+|+++++.++ ++|+||+.++...+.+..+++++..++|+||+.|++++++++.... +++. T Consensus 147 ~~~~~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~---~~~~--- 220 (384) T protein:vir:49 147 RIPPKQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLL---DFKT--- 220 (384) T ss_pred cccceeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCh---HHHH--- Confidence 2457889999999877665 8999999999999999999999999999999999999999875532 2222 Q ss_pred HHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccHHHHHHHH Q lcl|Aclame:pro 228 TDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNIEHQSLQF 305 (419) Q Consensus 228 ~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~e~~~~~~ 305 (419) +.+.+.+.+..|+|+++++++|++|+++++++.|+|++|.+++++++||++|||||.++|..+. +++++.+++...| T Consensus 221 -~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~ 299 (384) T protein:vir:49 221 -KQSRSRQAMKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKA 299 (384) T ss_pred -HHHHHHHhcccCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHH Confidence 2345566778899999999999999999999999999999999999999999999999997543 4567888999999 Q ss_pred HHHHhhHHHHHHHHHHHhhccC---hhh-hhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc Q lcl|Aclame:pro 306 VIYTLLPWVKRHEQAKTRDLLL---PSE-RKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGG 381 (419) Q Consensus 306 ~~~~i~P~~~~i~~~l~~~ll~---~~~-~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~gg 381 (419) +..++.|++..|+++|++++.. +.. ..+.+++|+.+.+++.+.+++.+++..+...|+++ ||+|+.+|++|+||| T Consensus 300 i~~~l~pi~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~~gG 378 (384) T protein:vir:49 300 VSRFLRPFVSELSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-KDLPEGETDSTLKGG 378 (384) T ss_pred HHHHHHHHHHHHHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-hhHHHHcCCCCCCCC Confidence 9999999999999999998743 222 24568899999999999999999999999999986 999999999999987 Q ss_pred ce--ee Q lcl|Aclame:pro 382 DI--YL 385 (419) Q Consensus 382 D~--~~ 385 (419) |. .| T Consensus 379 d~~~~~ 384 (384) T protein:vir:49 379 ETNEQY 384 (384) T ss_pred CCCCCC Confidence 52 33 No 81 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=4.6e-73 Score=417.15 Aligned_cols=395 Identities=15% Similarity=0.060 Sum_probs=294.8 Q ss_pred CCccc---hh--ccccccc-ccccchHHHHhhcCCCcccccccCHHH----HhccHHHHHHHHHHHHhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFSR---QL--LSNLGQT-QPGSGGWVSALLGSARSEAGQVVTPAS----ALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~~---~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~~~i~~ia~~ia~~~~~~~~~~ 70 (419) ||-.. +. ...+... ...+.......++ .+...+++... +..+++|++||++||++||++||+++... T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~---~~~~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~~~ 77 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFE---EYVEPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEGDD 77 (542) T ss_pred CccccccccccccchhhhhccccccccccccCC---ccccCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeeccc Confidence 66211 11 0000000 0000110001111 11122344433 34589999999999999999999986432 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEe Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRV 150 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~ 150 (419) .. .+++..||+++|+++||+.++.+++++||||+++.|+..|.+.+|+|++++.|++..+.+....+.. T Consensus 78 ~~-----------~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~~~~ 146 (542) T protein:vir:41 78 EG-----------VVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQTWD 146 (542) T ss_pred ch-----------hhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEeeec Confidence 21 2344569999999999999999999999999999999999999999999999999887665433221 Q ss_pred ec---------------------ccccccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 151 AG---------------------ADPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGV 208 (419) Q Consensus 151 ~~---------------------~~~~~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~ 208 (419) .. ...+++++|+|++.++ .++++|+||+..+...+.+..++.+++.++|+||++|+++ T Consensus 147 ~~~~~~~~~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gI 226 (542) T protein:vir:41 147 GVNITHFKDYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYV 226 (542) T ss_pred CCcceeEEeecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEE Confidence 10 1235667889998765 7899999999999999999999999999999999999999 Q ss_pred EEeCCCCC------chhhHHHHHHHHHHHHHHhccc-cccCcceecC------CCceeeecCcChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 209 IERPTDAP------ALKDQASVDRITDGWNAKFGGS-GNAKKVALLQ------EGMKFKPLSMTNVDAALIDALRLSALD 275 (419) Q Consensus 209 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~-~n~g~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~~~~ 275 (419) |++++... ...++++.+++++.|++.+.|. .|+|++++++ +|++|+++++++.|++|.|.+++++++ T Consensus 227 L~~~~~l~de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~ 306 (542) T protein:vir:41 227 ITVTGEFEDELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYD 306 (542) T ss_pred EEeCCccccccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHH Confidence 99986543 3457899999999999999885 5888999984 799999999999999999999999999 Q ss_pred HHHHhcCCHHHcccccCc--ccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHH Q lcl|Aclame:pro 276 IARIYKIPAHMVNELERA--TFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYA 353 (419) Q Consensus 276 Ia~~fgvpp~~~g~~~~~--~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~ 353 (419) ||++|||||.++|..+++ +++|+|++.+.|+++||.|++..|+++|+++|+++.+ .+++++|+.+.+++.|.++ T Consensus 307 Ia~afgVPp~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~-~~~~~~f~~~~ll~~d~~~--- 382 (542) T protein:vir:41 307 IAAAHMIDPYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFN-PKTRFKFNDETLLESDSVR--- 382 (542) T ss_pred HHHHhCCCHHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC-CceEEEecchhhcchHHHH--- Confidence 999999999999987665 4589999999999999999999999999999877644 4678899999998877554 Q ss_pred HHHHHHhCCCcCHHHHHHHhCCCCCCCc-ceeeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 354 AYAVGRQWGWLSINDIRRLENMPPVKGG-DIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 354 ~~~~~~~~g~~T~NE~R~~lGl~p~~gg-D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) .+..++++|++|+||+|+.| +++|+| |.++.|.|+........ +.+...+...|..|.++ T Consensus 383 ~~~~~v~~GilT~NE~Re~L--~g~~pgdd~~l~p~~~~~~~~~~~----~~n~~~~~~~~~~k~~~ 443 (542) T protein:vir:41 383 NCALLVQSGVLTPAEARERL--FGLDGGPDIFMVPSKGAAKSVKRQ----ERNYEKNQIREIRKIYA 443 (542) T ss_pred HHHHHHhCCCCCHHHHHHhh--CCCCCCCccccccccccccccccC----CcCCCCCchhhhhhccc Confidence 45668999999999999854 344444 45566766543221111 11111222233334333 No 82 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=1.6e-73 Score=419.70 Aligned_cols=379 Identities=11% Similarity=0.013 Sum_probs=281.7 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |||++++.+.+....+... .. .....++.+.++++++|++||++||++||++|+++++..++ ....| T Consensus 1 MGlf~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~---~~~~~ 67 (395) T protein:vir:98 1 MGILDFFSFKKSGTLSDDD--SG--------STTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKL---TENQK 67 (395) T ss_pred CcchhhhcCCCcccccccc--cc--------hhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCc---ccccc Confidence 9999887655433222111 01 11223567788999999999999999999999999975433 34468 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc-ceeEEEEe---eccccc Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP-DLKPMYRV---AGADPL 156 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~-~~~~~~~~---~~~~~~ 156 (419) ++.++|+.+||++||+++||+.++.+++++||||+++.++..+.+...++ ...... ........ .....+ T Consensus 68 ~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 141 (395) T protein:vir:98 68 DWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIYVADSFT------QDKKISGSQFKVSRVQGQTYEKTF 141 (395) T ss_pred hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCceecCCccc------ccccccCcccceeeecCceeeeEe Confidence 99999999999999999999999999999999999999886543332222 111111 11111111 112456 Q ss_pred ccceEEEecCCCCCCccc-ccHHHHHHHHHHHHH--HHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHH Q lcl|Aclame:pro 157 PQRLVHHVRWMSINGYTG-LSPVLLHANAIGHAQ--AIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNA 233 (419) Q Consensus 157 ~~~~i~~~~~~~~~~~~G-~s~~~~~~~~i~~~~--~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (419) ++++|+|+++++.++..+ .+++......+.... .......+++.+++.+.+++....... ++++.++.++.+++ T Consensus 142 ~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 218 (395) T protein:vir:98 142 TFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSD---GGRQSKSDKDFFKR 218 (395) T ss_pred cCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCC---cHHHHHHHHHHHHH Confidence 788999999887766443 344444444444333 334455677888888888876654433 34555666666666 Q ss_pred Hhccc-cccCcceecCCCceeeecCc------ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHH Q lcl|Aclame:pro 234 KFGGS-GNAKKVALLQEGMKFKPLSM------TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFV 306 (419) Q Consensus 234 ~~~g~-~n~g~~~vl~~g~~~~~l~~------~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~ 306 (419) .+.+. .+.++++++++|++|+++++ ++.++|+.+.+++++++||++|||||.++| ++++|.|++.+.|+ T Consensus 219 ~~~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~----~~~sn~e~~~~~f~ 294 (395) T protein:vir:98 219 TVEKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH----GDIADNQKNYELLL 294 (395) T ss_pred HHhhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCcccHHHHHHHHH Confidence 66653 35667888999999999985 467889999999999999999999999996 57899999999999 Q ss_pred HHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--ccee Q lcl|Aclame:pro 307 IYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG--GDIY 384 (419) Q Consensus 307 ~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g--gD~~ 384 (419) ++||.|++.+||++|+++||++.+... .+.||++.+++.|.+++++.+++++++|++|+||+|+++|+||+|| ||++ T Consensus 295 ~~tl~P~~~~ie~~l~~kll~~~~~~~-g~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~~ 373 (395) T protein:vir:98 295 EGPIESLITNIVDGLEYAIFDKSETLQ-GSFIKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGKVL 373 (395) T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhcC-cceeeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCcee Confidence 999999999999999999999876432 2357778999999999999999999999999999999999999976 9999 Q ss_pred eeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 385 LSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 385 ~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) ++++|++|++..+.. +++++|+ T Consensus 374 ~~~~n~~~~~~~gge--------~~~~~~~ 395 (395) T protein:vir:98 374 YMTKNYESVLERGGE--------VDEEVET 395 (395) T ss_pred eecccceecccccCC--------CCCCCCC Confidence 999999998753211 1111222 No 83 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=4.5e-73 Score=417.19 Aligned_cols=379 Identities=14% Similarity=0.080 Sum_probs=295.3 Q ss_pred CHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc---ce-eeccchHHHHhhccccccC--------CHHHHHHHHHH Q lcl|Aclame:pro 38 TPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD---RK-PATDHPLYSILKYEPNPWQ--------TPFEYQEQSQV 105 (419) Q Consensus 38 ~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~---~~-~~~~~~~~~lL~~~pn~~~--------s~~~f~~~~~~ 105 (419) -..-+..+|+|++||++||++||++|++++.+.+.. .. ....+....+++.+||+.| ++.+||+.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 233344589999999999999999999998654321 11 1222334446677788755 66789999999 Q ss_pred HHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEE--------Eee-------------------------c Q lcl|Aclame:pro 106 AVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMY--------RVA-------------------------G 152 (419) Q Consensus 106 ~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~--------~~~-------------------------~ 152 (419) +++++||||++++|+..|.+.+|+|++|++|++..+...+... ... . T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 9999999999999999999999999999999987765432111 000 1 Q ss_pred ccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 153 ADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGW 231 (419) Q Consensus 153 ~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (419) ...++.++|+|++.+ +.++++|+||+.+++..+..+.++.+++.++|+||+.|++++++++ +..++++.+++++.| T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~---~~l~~e~~~~~~~~~ 237 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKG---AELTEKGREEMRNLI 237 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---cCCCHHHHHHHHHHH Confidence 123567788888865 4788999999999999999999999999999999999999999863 335789999999999 Q ss_pred HHHhc-----------cccccCcceecCCCceeeecC--------cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC Q lcl|Aclame:pro 232 NAKFG-----------GSGNAKKVALLQEGMKFKPLS--------MTNVDAALIDALRLSALDIARIYKIPAHMVNELER 292 (419) Q Consensus 232 ~~~~~-----------g~~n~g~~~vl~~g~~~~~l~--------~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~ 292 (419) ++.++ |..|++++++++.|+++.+++ ++++|+||.|.+++++++||++|||||.++|..++ T Consensus 238 ~~~~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~ 317 (467) T protein:vir:31 238 EDNNEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVES 317 (467) T ss_pred HhhhcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCC Confidence 98776 556889999998887655543 36789999999999999999999999999998877 Q ss_pred ccc-ccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHH Q lcl|Aclame:pro 293 ATF-SNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIR 370 (419) Q Consensus 293 ~~~-sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R 370 (419) +++ ++.+++...|+++||.|++..|+++++++|++..+. .+++++||.+.+++.|.++++++++.++++|++|+||+| T Consensus 318 ~~~~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R 397 (467) T protein:vir:31 318 GAFSTDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELR 397 (467) T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHH Confidence 665 789999999999999999999999999999987665 467899999999999999999999999999999999999 Q ss_pred HHhCCCCCCCcceee-eccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 371 RLENMPPVKGGDIYL-SPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 371 ~~lGl~p~~ggD~~~-~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) +++|+||+++++.+- .+......+...+......+..+..+++.++.+. T Consensus 398 ~~~Gl~pi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (467) T protein:vir:31 398 DEFGFEPFPEEHVYGGETLVAEVTGGSGPGGGIGDQIEQLVEDRADEIID 447 (467) T ss_pred HHhCCCCCCcccccCCcccccccccccCCCCcccCcCCCCCCCcccchHh Confidence 999999996544321 1111111111112222222333333444444443 No 84 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=1.6e-72 Score=414.21 Aligned_cols=375 Identities=13% Similarity=0.136 Sum_probs=299.0 Q ss_pred CCccchhcccccccccccchHHHHh--hcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSAL--LGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPAT 78 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~ 78 (419) |+||++.++...........+...+ .......++..++.++++++|+|++||++||++||++|++++++.. T Consensus 1 M~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~~~~~~~------- 73 (386) T protein:vir:49 1 MPIFNITNLATESPPINQESFFDIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSNDLATAKITTSRKQL------- 73 (386) T ss_pred CchhhhhccCCCCcccchhhhhhhhhccccccccCCceechhhhhccHHHHHHHHHHHHHhhhCceeeccchh------- Confidence 9999888765554444333333322 1223344567899999999999999999999999999999986432 Q ss_pred cchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEee------ Q lcl|Aclame:pro 79 DHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRVA------ 151 (419) Q Consensus 79 ~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~~------ 151 (419) ..|+.+||++||+++||+.++.+++++||||++|.|+..|++.+|+|++|+.|++..+.++.. .|.+. T Consensus 74 -----~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~ 148 (386) T protein:vir:49 74 -----QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPHI 148 (386) T ss_pred -----hhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEEcCccc Confidence 346779999999999999999999999999999999999999999999999999988765432 22221 Q ss_pred -cccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHH Q lcl|Aclame:pro 152 -GADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITD 229 (419) Q Consensus 152 -~~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (419) ....++.++|+|+++++.++ ++|+|++..+...+.+..++.++..++|+||+.|++++++++.. ++++.+++++ T Consensus 149 ~~~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~----~~~~~~~~~~ 224 (386) T protein:vir:49 149 APKQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGG----LLDFKTKVSR 224 (386) T ss_pred cceeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCC----ChHHHHHHHH Confidence 13457889999999887766 89999999999999999999999999999999999999998755 4456667777 Q ss_pred HHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 230 GWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYT 309 (419) Q Consensus 230 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~ 309 (419) .|.. +..|+|+++++++|++|++++.++.|+|++|.+++++++||++|||||.++|..+. ++++.+ +.+.|+.++ T Consensus 225 ~~~~---~~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~~~~~~-~~~~~~~~~ 299 (386) T protein:vir:49 225 SRQA---MKQMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDGD-QQSSLE-MIYNIYFKS 299 (386) T ss_pred HHHH---hccCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC-ccchHH-HHHHHHHHH Confidence 7764 34588999999999999999999999999999999999999999999999986543 455554 456789999 Q ss_pred hhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccc Q lcl|Aclame:pro 310 LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMN 389 (419) Q Consensus 310 i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n 389 (419) |.|++..|+++++++|+. +++||.+.+.+.|.+.++..+.+++++|++|+||+|++++..++...+... . T Consensus 300 i~~~l~~i~~~~~~~l~~-------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~~~~~-~-- 369 (386) T protein:vir:49 300 VSRYLRPFVSEMSKKLSC-------EVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPKELPD-G-- 369 (386) T ss_pred HHHHHHHHHHHHHHHhcc-------hhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCCcCcc-h-- Confidence 999999999999999864 378899999999999999999999999999999999999876653322111 0 Q ss_pred cccccccccccCCCCCCccccccch Q lcl|Aclame:pro 390 MVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) +.... ...++++.+ +++ T Consensus 370 ----~~~~~-~~~~gGd~~---~~~ 386 (386) T protein:vir:49 370 ----KNPNR-TSLKGGEIN---EQD 386 (386) T ss_pred ----hccCC-CCCCCCCCC---CCC Confidence 01010 111122211 111 No 85 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=2.9e-72 Score=412.82 Aligned_cols=368 Identities=15% Similarity=0.137 Sum_probs=286.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++.+..+..........+...+. ..+.++..++.++++++|+|++||++||+.||++||+++++.. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~~--------- 70 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVDSDFL-ASLKGNEWVSAETALRNSDLFSIINQLSNDLATVKLITSRKKL--------- 70 (382) T ss_pred CccccccccCCcccccccccchhhhcc-ccccCCcccchHhhhccHHHHHHHHHHHHhhccCceeeecchh--------- Confidence 998877655443222111111222222 2334567799999999999999999999999999999986532 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE-EEEe--ec----- Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP-MYRV--AG----- 152 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~-~~~~--~~----- 152 (419) ..|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.++.. .|.+ .+ T Consensus 71 ---~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~ 147 (382) T protein:vir:48 71 ---QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPP 147 (382) T ss_pred ---hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEecCccccc Confidence 347789999999999999999999999999999999999999999999999999988766533 2222 11 Q ss_pred ccccccceEEEecCCCCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHH Q lcl|Aclame:pro 153 ADPLPQRLVHHVRWMSING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGW 231 (419) Q Consensus 153 ~~~~~~~~i~~~~~~~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (419) ...+++++|+|+++++.++ ++|+||+.++..++.+..++.++..++|+||+.|++++++++.. ++++.+++++.| T Consensus 148 ~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~----~~e~~~~~~~~~ 223 (382) T protein:vir:48 148 KQHVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGG----LLDFKTKLSRSR 223 (382) T ss_pred eeEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCC----ChHHHHHHHHHH Confidence 2357789999999887776 89999999999999999999999999999999999999998654 456677777777 Q ss_pred HHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhh Q lcl|Aclame:pro 232 NAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLL 311 (419) Q Consensus 232 ~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~ 311 (419) .+ +..|+|+++++++|++|++++.++.|+||+|.+++++++||++|||||.++|..++ +++.+++.+.|+++||. T Consensus 224 ~~---~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~~--~~~~~~~~~~~~~~~l~ 298 (382) T protein:vir:48 224 QA---MKQMQGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQGD--QQSSLEMSSDLYSKAVS 298 (382) T ss_pred Hh---hccCCCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC--cccHHHHHHHHHHHHHH Confidence 65 34578999999999999999999999999999999999999999999999997554 45778889999999999 Q ss_pred HHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-----CCCcceeee Q lcl|Aclame:pro 312 PWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPP-----VKGGDIYLS 386 (419) Q Consensus 312 P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p-----~~ggD~~~~ 386 (419) |++..|+++++++|+++.+. +....++ .+.......+.+++++|++|+||+|+.++..+ +++++.+.. T Consensus 299 p~~~~i~~~l~~~l~~~~~~-~~~~~~~------~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~~~~~~~~~~~~~~ 371 (382) T protein:vir:48 299 RYLRPFLSELSQKLSCDVDA-DIFPAVD------PTGSNYISRINSLVKTGTLAQNQGLYILQQAEILPKELPNGENPNS 371 (382) T ss_pred HHHHHHHHHHHHHhcChhhh-hhhhhhc------cchhHHHHHHHHHhhcCccCHHHHHHHHhhCCCCCcchhhhhcCCC Confidence 99999999999999876432 2222222 33344555677789999999999999874332 233332211 Q ss_pred ccccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 387 PMNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 387 ~~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) + .++++.++ ++ T Consensus 372 ~--------------~~GGd~~~----~~ 382 (382) T protein:vir:48 372 T--------------LKGGEEDG----QD 382 (382) T ss_pred C--------------CCCCCCCC----CC Confidence 0 11221111 11 No 86 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=1.4e-71 Score=409.07 Aligned_cols=392 Identities=15% Similarity=0.049 Sum_probs=289.4 Q ss_pred CCccchhc-------ccccccccccchHHHHhhcCCCcccccccC----HHHHhccHHHHHHHHHHHHhhccCCeeEeee Q lcl|Aclame:pro 1 MFFSRQLL-------SNLGQTQPGSGGWVSALLGSARSEAGQVVT----PASALSLTVLQNCVTLLAESIAQLPVELYER 69 (419) Q Consensus 1 M~f~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~ 69 (419) ||-..... +.+....+... +...+.. +-..+++ ...+..+++|++||++||+.||++|++++.+ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~ 75 (540) T protein:vir:41 1 MFNYHLSIKSLEKYRAIKGDTDSQAL-KEDRFEE----YVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGD 75 (540) T ss_pred CCCcccChhhccchhhhhcccccccc-ccCCCCc----cccCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecC Confidence 55221110 11111110000 0001111 1111222 2445678999999999999999999998643 Q ss_pred cCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEE Q lcl|Aclame:pro 70 SGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYR 149 (419) Q Consensus 70 ~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~ 149 (419) . +.+..+ .||++||+.+||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+...++... T Consensus 76 ~---------~~~~~~---lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~ 143 (540) T protein:vir:41 76 D---------GGVEEL---LRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTW 143 (540) T ss_pred c---------cchhhh---ccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeee Confidence 2 223333 3899999999999999999999999999999999999999999999999887665432211 Q ss_pred -------e--e------------cccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 150 -------V--A------------GADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSG 207 (419) Q Consensus 150 -------~--~------------~~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ 207 (419) . . ....+++++|+|++.+ +.++++|+||+..+...+....++.+++.++|+||++|++ T Consensus 144 d~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~g 223 (540) T protein:vir:41 144 DGIHVTYFKDYRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSY 223 (540) T ss_pred cCceeeeeecccccceeeccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCce Confidence 0 0 0124567888898865 5789999999999999999999999999999999999999 Q ss_pred EEEeCCCCCch------hhHHHHHHHHHHHHHHhcc-ccccCcceecC------CCceeeecCcChhhHHHHHHHHHHHH Q lcl|Aclame:pro 208 VIERPTDAPAL------KDQASVDRITDGWNAKFGG-SGNAKKVALLQ------EGMKFKPLSMTNVDAALIDALRLSAL 274 (419) Q Consensus 208 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g-~~n~g~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~~~ 274 (419) +|++++....+ ..+...+++++.|.+.++| ..|+|++++++ +|++|++++++++|+||.|.++++++ T Consensus 224 iL~~~g~l~~e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~ 303 (540) T protein:vir:41 224 VITVTGEFEDEMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKH 303 (540) T ss_pred EEEeCcccCchhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHH Confidence 99998655432 2234456777788888777 45899999984 79999999999999999999999999 Q ss_pred HHHHHhcCCHHHcccccC--cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHH Q lcl|Aclame:pro 275 DIARIYKIPAHMVNELER--ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRY 352 (419) Q Consensus 275 ~Ia~~fgvpp~~~g~~~~--~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~ 352 (419) +||++|||||.++|..+. .+++|++++.+.|+++||.|++.+||++|+++|++.. ..+++++||.+.+++.|.+++ T Consensus 304 eIa~afgVPp~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~-~~~~~i~f~~~~ll~~D~~~~- 381 (540) T protein:vir:41 304 DIAAAHMIDPYRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKL-DPGARFVFNEEILMESEFVHN- 381 (540) T ss_pred HHHHHhCCCHHHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CCceEEEecchhhcchHHHHH- Confidence 999999999999998654 4678999999999999999999999999999987653 356789999999988776554 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCC-CcceeeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 353 AAYAVGRQWGWLSINDIRRLENMPPVK-GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 353 ~~~~~~~~~g~~T~NE~R~~lGl~p~~-ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) +++++++|++|+||+|+.| +++| ++|.++.|.|+...+..+.... ..++...+..++++ T Consensus 382 --~~~lv~~G~lT~NE~Re~L--~g~e~gdd~~l~p~n~~~~~~~~~~~~----~~~~~~~~~~k~~~ 441 (540) T protein:vir:41 382 --YALLVQCGVLTPSEVREKL--FGLDGGPDMFMVPSSIGKSAMKRQKRN----YEKNQINEIKRTYA 441 (540) T ss_pred --HHHHHhCCCCCHHHHHHHh--CcCcCCCcccccccccccccccccccc----cCCCCccccccccc Confidence 5668999999999999864 3444 4566777888765332221111 11111122333333 No 87 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=1.1e-67 Score=387.60 Aligned_cols=413 Identities=15% Similarity=0.082 Sum_probs=307.9 Q ss_pred CCccc-hhcccccc-----------cccccchHHHHhhcCCCcccccccCHHH---Hh-ccHHHHHHHHHHHHhhccCCe Q lcl|Aclame:pro 1 MFFSR-QLLSNLGQ-----------TQPGSGGWVSALLGSARSEAGQVVTPAS---AL-SLTVLQNCVTLLAESIAQLPV 64 (419) Q Consensus 1 M~f~~-~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~v~~~i~~ia~~ia~~~~ 64 (419) |-=.+ ..+...-. .++.+..--.+-+......-..++++.+ .. .+|++.+||+++++.||+++| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~~~iag~g~ 80 (651) T protein:vir:99 1 MTDTTGETQETKVHVEGLGGEADLAKSPNSTQIPDHRIQSHNVGVNPPYNPDRLAAFLELNETLATGIRKKSRYEVGFGF 80 (651) T ss_pred CCCccceeeeeEEEeecccccccccccccccccchhhhcccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhhhhhccCc Confidence 54222 11111000 0111111111111111112223334433 23 399999999999999999999 Q ss_pred eEeeecC---Cccee----e------ccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 65 ELYERSG---DDRKP----A------TDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 65 ~~~~~~~---~~~~~----~------~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) .+..... +.... + ..++....+...+|+.++..++++.++.|++.+|++|+.+.++..|.+..++++ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L~~l 160 (651) T protein:vir:99 81 DLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGRPVGLAYV 160 (651) T ss_pred eeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccchhhhhhc Confidence 9864321 11111 1 012223334456788999999999999999999999999999999999999999 Q ss_pred cCceeEEEEccce----------------------------------e-EEE---------------------------- Q lcl|Aclame:pro 132 DNEAVTVMKGPDL----------------------------------K-PMY---------------------------- 148 (419) Q Consensus 132 ~~~~v~~~~~~~~----------------------------------~-~~~---------------------------- 148 (419) ++..+++..+... + ..+ T Consensus 161 p~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~d~~~ 240 (651) T protein:vir:99 161 PARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYREDEES 240 (651) T ss_pred ChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEeccCcce Confidence 9887765432110 0 000 Q ss_pred --------------Ee---ecccccccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEE Q lcl|Aclame:pro 149 --------------RV---AGADPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIE 210 (419) Q Consensus 149 --------------~~---~~~~~~~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~ 210 (419) .. .+...+++++|+|++.++ .++++|+||+..+..++.++.++++++.++|+||+.|+++|+ T Consensus 241 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p~gil~ 320 (651) T protein:vir:99 241 EREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIPRMVIK 320 (651) T ss_pred eeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE Confidence 00 011124568899998765 699999999999999999999999999999999999999999 Q ss_pred eCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCC-----------CceeeecCcCh-hhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 211 RPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQE-----------GMKFKPLSMTN-VDAALIDALRLSALDIAR 278 (419) Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~-----------g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~ 278 (419) +++ +.+++++++++++.|++.+. |+|++++|+. |++|+++++++ +|+||.|++++++++||+ T Consensus 321 ~~~---~~ls~e~~~~lr~~~~~~~~---nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~ 394 (651) T protein:vir:99 321 VTG---GELSEESKRDLRQMLNGLRE---ESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAK 394 (651) T ss_pred ecC---CCCCHHHHHHHHHHHHHHhc---cCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHH Confidence 874 34588999999999998664 5688988865 99999999987 599999999999999999 Q ss_pred HhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhh---hhhhhhhhhhhhhccHHHHHHHH Q lcl|Aclame:pro 279 IYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERK---QYFIEYNLAGLLRGDQSSRYAAY 355 (419) Q Consensus 279 ~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~---~~~~~fd~~~~~~~d~~~~~~~~ 355 (419) +|||||.++|..+++|++|+|++.+.|+++||.|++..||++||++|+++.++. .++++|+.+.+++.|.+++++.+ T Consensus 395 afgVPp~~lG~~~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D~~~~~e~~ 474 (651) T protein:vir:99 395 VLEVPPVKIGVTDSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQEAQLAEQRV 474 (651) T ss_pred HhCCCHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhccHHHHHHHH Confidence 999999999999999999999999999999999999999999999999887653 34678888899999999999999 Q ss_pred HHHHhCCCcCHHHHHHHhCCCCCC--Ccceeeeccccccccccccc---c--CCCCCCccccccchhcccC Q lcl|Aclame:pro 356 AVGRQWGWLSINDIRRLENMPPVK--GGDIYLSPMNMVDASKPQPI---P--MGKTEPTKAALDEIGRILS 419 (419) Q Consensus 356 ~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~~~n~~~~~~~~~~---~--~~~~~~~~~~~~e~~~~~~ 419 (419) ..++++|++|+||+|+++|+||++ +||.++.+.++...+..... + ..++++.+..+.|.+++-| T Consensus 475 ~~~i~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~~~gge~~~~~~~~~~~~~~~~e~~~~~~ 545 (651) T protein:vir:99 475 RAMRLAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDVAGGGETEAVHEPPEENKIGEREWDTVKS 545 (651) T ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCccccccccccccccccccccCCCCcccccCccccccccchhhhhhh Confidence 999999999999999999999995 48998888777654432211 1 1223345555666777766 No 88 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=2.2e-64 Score=369.63 Aligned_cols=405 Identities=10% Similarity=0.020 Sum_probs=274.2 Q ss_pred CCccchhcccc----------------------------------cccccccchH------HHHhhcCCCcccccccCH- Q lcl|Aclame:pro 1 MFFSRQLLSNL----------------------------------GQTQPGSGGW------VSALLGSARSEAGQVVTP- 39 (419) Q Consensus 1 M~f~~~~~~~~----------------------------------~~~~~~~~~~------~~~~~~~~~~~~~~~~~~- 39 (419) -+||.+..... ....|....+ +..-.++.......++.. T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~g~~~~~epp~d~~ 87 (648) T protein:vir:79 8 RGFWSRISLMWRDEDDDKEPLVLEESMQLGEAPGAMPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGGGGRDFEEPEFDFN 87 (648) T ss_pred chhhhhhhhhccCccccccccccccccccCCCccccCCCCcccccccccchhHHHHHhHHHHHhhcCCccccccCCcCHH Confidence 22221110000 0011111111 111122222232333333 Q ss_pred ---HHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEE Q lcl|Aclame:pro 40 ---ASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSF 116 (419) Q Consensus 40 ---~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~ 116 (419) ..+..+|.|++||++||..||++||.+..+++. ....++. .+|..+||+++|+++||+.++.+++++||||++ T Consensus 88 ~l~~l~~~np~V~~aI~iia~~ia~l~~~i~~~~~~---~~~~~~~-~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYve 163 (648) T protein:vir:79 88 EITSAYNTEGYVRQAVDKYIEMMFKADWDFVSKNPN---AVEYIRM-RFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIA 163 (648) T ss_pred HHHHHHhcChHHHHHHHHHHHHHhhCcceEEecCCc---cchhhHH-HHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEE Confidence 233469999999999999999999998765432 2222333 444569999999999999999999999999999 Q ss_pred EeecCCCc---------------eEEEEEecCceeEEEEccceeEEEEe---ec---ccccccceEEEecC-CCCCCccc Q lcl|Aclame:pro 117 IDRDQDGV---------------IQGLYPLDNEAVTVMKGPDLKPMYRV---AG---ADPLPQRLVHHVRW-MSINGYTG 174 (419) Q Consensus 117 i~~~~~G~---------------~~~l~~~~~~~v~~~~~~~~~~~~~~---~~---~~~~~~~~i~~~~~-~~~~~~~G 174 (419) +.|+..|. +..+||++|.+|++..+.++....|. .+ ...+++++|+|+++ ++.++++| T Consensus 164 iiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~~~G 243 (648) T protein:vir:79 164 KSRAKDALPFQGMNVMGVGDSMPVAGYFPLNLASMKVKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKGRAFG 243 (648) T ss_pred EEecCCCccchhhhhhhhccccceeeeEeecCceeEEEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCCCCcee Confidence 99998873 47899999999999888776543332 11 13467889999985 57899999 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceee Q lcl|Aclame:pro 175 LSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFK 254 (419) Q Consensus 175 ~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~ 254 (419) +||+..+...+.+..++.++..++|.||++|+++++++.. ....+..+++++.|.+.+.+. .+.+++.++. T Consensus 244 lSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~gil~~~~~---~~~~e~~k~~~e~~~~~~~~~------~i~gg~v~~~ 314 (648) T protein:vir:79 244 TPWLLPALDDIRALRQVEENVLRLVYRNLHPLWHVKVGLE---QEGFGAEEGEVDLVRGEVENM------DVEGGMVTTE 314 (648) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCC---ccchHHHHHHHHHHHHhcccc------cccccccccc Confidence 9999999999999999999999999999999999998632 123345566667777666543 2223333333 Q ss_pred ecC----cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhcc---- Q lcl|Aclame:pro 255 PLS----MTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLL---- 326 (419) Q Consensus 255 ~l~----~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll---- 326 (419) .+. .+++|+||++.+++++++||++|||||.++|..+++++++.+++... +..+++|++..++..++.++. T Consensus 315 ~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG~~~~ss~stae~~~~~-~~~~i~~l~~~i~~~le~~~~~~ll 393 (648) T protein:vir:79 315 RVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELMMGRGGTASRSTGDNLSSD-FKDRIKALQKVMATFINEFMVKEIL 393 (648) T ss_pred eeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhHcccCCCccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh Confidence 332 26689999999999999999999999999999888888888776554 577788877766655554432 Q ss_pred Chhh-----hhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce-eeeccccccccccccc- Q lcl|Aclame:pro 327 LPSE-----RKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI-YLSPMNMVDASKPQPI- 399 (419) Q Consensus 327 ~~~~-----~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~-~~~~~n~~~~~~~~~~- 399 (419) .+.. ..+.+++|+++.+++.|.+.+++.+.+++.+|+||+||+|+++||||+|+|+. .++..++.+.....+. T Consensus 394 ~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~ 473 (648) T protein:vir:79 394 MEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLYEHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALA 473 (648) T ss_pred hhhhccccccccceEEEeecccchhhHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccc Confidence 2211 12346789999999999999999999999999999999999999999987653 3444444332211110 Q ss_pred -----cC-------------CCCCCccccccchhcccC Q lcl|Aclame:pro 400 -----PM-------------GKTEPTKAALDEIGRILS 419 (419) Q Consensus 400 -----~~-------------~~~~~~~~~~~e~~~~~~ 419 (419) +. .+.+....++++.|+=.+ T Consensus 474 ~~~~~~~~~~~~~a~~eg~~~e~~~~~~~~~~~g~~~~ 511 (648) T protein:vir:79 474 ALAPTPAGGSSASASGDKKKKATDNKTKPTNQHGTKTS 511 (648) T ss_pred cCCCCCCCCCCCCccccccccccCCCCCCCCCCCcCCC Confidence 00 000011111122221111 No 89 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=8.9e-60 Score=344.31 Aligned_cols=271 Identities=19% Similarity=0.336 Sum_probs=241.2 Q ss_pred hccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEE Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTV 138 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~ 138 (419) ||++||+++++++.+ .|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++ T Consensus 1 ia~l~~~~~~~~~~~-----~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v 75 (278) T protein:vir:78 1 MASLPLKMYEDYKVV-----NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEM 75 (278) T ss_pred CccceeEEEecCccc-----ccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEE Confidence 999999999865543 589999999999999999999999999999999999999999999999999999999999 Q ss_pred EEccceeEEEE-ee----cccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeC Q lcl|Aclame:pro 139 MKGPDLKPMYR-VA----GADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERP 212 (419) Q Consensus 139 ~~~~~~~~~~~-~~----~~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~ 212 (419) ..+.++...++ +. ....+++++|+|++++ +.++++|+|++..+..++....++.+++...+.+ .|+++++.+ T Consensus 76 ~~~~~~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~ 153 (278) T protein:vir:78 76 LIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYG 153 (278) T ss_pred EEcCCCceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeC Confidence 98876543332 21 2345778888888865 7889999999999999999999999887655554 478998887 Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC Q lcl|Aclame:pro 213 TDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER 292 (419) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~ 292 (419) +.. ++++.+++++.|++.+. ++|+++++++|++|+++++++.|+++.|.+++++++||++|||||.++|..++ T Consensus 154 ~~l----~~e~~~~~~~~~~~~~~---~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~ 226 (278) T protein:vir:78 154 SNV----GKEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSN 226 (278) T ss_pred CCC----CHHHHHHHHHHHHHHhc---cCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC Confidence 654 67889999999998764 56889999999999999999999999999999999999999999999999999 Q ss_pred cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhh-hhhhhhhhhhhh Q lcl|Aclame:pro 293 ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGL 343 (419) Q Consensus 293 ~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~-~~~~~~fd~~~~ 343 (419) ++++|++++.+.|++.||+|+++.|+++|+++||++.+. .+++++||.+.+ T Consensus 227 ~~~sn~~~~~~~~~~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 227 TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 999999999999999999999999999999999998875 478999999988 No 90 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=9.1e-55 Score=316.84 Aligned_cols=336 Identities=12% Similarity=0.094 Sum_probs=249.9 Q ss_pred CCccchhcc-cccc-c-ccc----------cchHHHHhhcCCCcc---ccc-------ccCHHHHhccHHHHHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLS-NLGQ-T-QPG----------SGGWVSALLGSARSE---AGQ-------VVTPASALSLTVLQNCVTLLAE 57 (419) Q Consensus 1 M~f~~~~~~-~~~~-~-~~~----------~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~v~~~i~~ia~ 57 (419) |.=+++... .... . .+. +..--...|..+.+. ... .+..+.+++.|+-+.|+..+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~ 80 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFR 80 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHh Confidence 883221111 1000 0 000 000001112211111 111 0111224455555566544433 Q ss_pred hhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeE Q lcl|Aclame:pro 58 SIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVT 137 (419) Q Consensus 58 ~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~ 137 (419) .-+ ..+......|++..++ .+||++||+++|++ ++.+++++||||++++|+..|++.+|+|+++.+|+ T Consensus 81 ~~~----------~h~~~~~~~~n~l~l~-~~Pn~~~t~~~f~~-l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~ 148 (368) T protein:vir:79 81 AAA----------HHSSAVYVKRNILVST-FIPHPLLSRATFER-LVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVR 148 (368) T ss_pred hcc----------ccchhhhhhcchhhhh-cCCCcCCCHHHHHH-HHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccce Confidence 321 1122334457776555 58999999999976 67899999999999999999999999999999999 Q ss_pred EEEccceeEEEEeec-ccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC Q lcl|Aclame:pro 138 VMKGPDLKPMYRVAG-ADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDA 215 (419) Q Consensus 138 ~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~ 215 (419) +..+.+.++.....+ ...+++++|+|++.+ +.++++|+||+..++..+.+..++..+..++|+||+.|+++|.+++ T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~-- 226 (368) T protein:vir:79 149 RGLDLNTYFFVQNWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTD-- 226 (368) T ss_pred eeccCCEEEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC-- Confidence 887776554443333 235778889999864 5789999999999999999999999999999999999999998863 Q ss_pred CchhhHHHHHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 216 PALKDQASVDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL 290 (419) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~ 290 (419) +.+++++.+++++.|++ +.|..|+|+++++ ++|++|++++.+++|+||.|.+++++++||++|||||.++|+. T Consensus 227 -~~l~~e~~~~lk~~~~~-~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~ 304 (368) T protein:vir:79 227 -AAQKQEDVDTLREAMKS-AKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGII 304 (368) T ss_pred -CCCCHHHHHHHHHHHHH-hcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcccc Confidence 34588999999999987 6888999999998 6789999999999999999999999999999999999999986 Q ss_pred cCc--ccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHH Q lcl|Aclame:pro 291 ERA--TFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGR 359 (419) Q Consensus 291 ~~~--~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~ 359 (419) +++ +++|.|++.+.|+++||.|+++.|+ +++.+|.. ..++|+...+++.|.+.++....+-. T Consensus 305 ~~~t~~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~------e~~rF~~~~l~~~D~~a~a~~~~rsa 368 (368) T protein:vir:79 305 PNNTGGFGDVEKAAMVFARNEVKPLQDRLL-AINDWIGD------EVVRFAPYALGGHDQPAAAPGGQRSA 368 (368) T ss_pred CCCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHhccCc------ceeeechhHhhcccccccCCcccccC Confidence 654 4899999999999999999999997 67776632 24789999999999998887433222 No 91 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=9e-53 Score=305.91 Aligned_cols=328 Identities=15% Similarity=0.133 Sum_probs=231.1 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhc---cCCeeEeeecCC----- Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIA---QLPVELYERSGD----- 72 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia---~~~~~~~~~~~~----- 72 (419) |- ...........+.. ...|..+. .++..+....++.|+..+.+... .-|+....-.+- T Consensus 1 ~~--~~~~~~~~~~~~~~----~~~~~~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~~n~ 67 (348) T protein:vir:26 1 MT--EQLIHSHTTDGTES----KSVYSFDP-------NPEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIANANG 67 (348) T ss_pred CC--ccccchhhccccCC----ceEEEecC-------CCeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHhhhh Confidence 32 11111000000000 01111110 01112223334444444432221 112211000000 Q ss_pred ccee---eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEE Q lcl|Aclame:pro 73 DRKP---ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYR 149 (419) Q Consensus 73 ~~~~---~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~ 149 (419) -... ...+-+.. ..+||+.+|+.+|++.+ .+++++||||++++|+..|++.+|+|+++.+|++..+.+.+.... T Consensus 68 ~h~~~i~~k~N~l~~--~~~Pn~~~t~~~f~~~~-~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~~~~~~~~ 144 (348) T protein:vir:26 68 YHGSLLKARANYVAG--RFMNGGGLPMYKMNSAC-WDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNGDFVQLLR 144 (348) T ss_pred hhhhhHhhhhhHHhh--cccCCCCCCHHHHHHHH-HHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecCcEEEEEe Confidence 0000 00001111 23699999999997764 699999999999999999999999999999999987766544434 Q ss_pred eecccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHH Q lcl|Aclame:pro 150 VAGADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT 228 (419) Q Consensus 150 ~~~~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (419) ......+++++|+|++.+ +.++++|+|++..+++.+.+..++..+..++|+||++|++++..++ +.+++++.++++ T Consensus 145 ~g~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~---~~ls~e~~~~lk 221 (348) T protein:vir:26 145 NNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATD---PNLSEADEKALK 221 (348) T ss_pred cCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---CCCCHHHHHHHH Confidence 444456788999999965 4689999999999999999999999999999999999999998763 346889999999 Q ss_pred HHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc--CcccccHHHH Q lcl|Aclame:pro 229 DGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE--RATFSNIEHQ 301 (419) Q Consensus 229 ~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~--~~~~sn~e~~ 301 (419) ++|++. .|.+|.|+++++ ++|++++|++.++.|+||+|.+++++++||++|||||.++|+.+ +++++|.+++ T Consensus 222 ~~~~~~-~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e~~ 300 (348) T protein:vir:26 222 EKIASS-KGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPLKV 300 (348) T ss_pred HHHHHh-cCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHHHH Confidence 999986 677899999998 78999999999999999999999999999999999999999754 4678999999 Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhh-hhccHHHH Q lcl|Aclame:pro 302 SLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGL-LRGDQSSR 351 (419) Q Consensus 302 ~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~-~~~d~~~~ 351 (419) .+.|++++|.|++.+|++++|++|+.+. ..+++||++.. .+.+..+. T Consensus 301 ~~~f~~~~l~P~~~~ie~~ln~~l~~~~---~~~~~fdl~~~~e~~~~~a~ 348 (348) T protein:vir:26 301 SQVYDFYEVIPVCKRFMDAVNNDPEIPD---NLKLKFNLNPGVESANGSAV 348 (348) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhCCCC---ccEEEEecCcccccchhhcC Confidence 9999999999999999999999986543 34566776632 22222222 No 92 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=3.3e-52 Score=302.85 Aligned_cols=329 Identities=14% Similarity=0.156 Sum_probs=233.6 Q ss_pred CCccchhcccccccccc-----cchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHH-hhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPG-----SGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAE-SIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~-~ia~~~~~~~~~~~~~~ 74 (419) |.=.|+..+......+. ..+.-...|+.+.+. ..+....+..|+..... ..-.-|+....-.+ .. T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~--------~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~-~~ 96 (376) T protein:vir:10 26 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPT--------PVMNRAEILDYVECWSNGEWFEPPVSFAGLAK-SF 96 (376) T ss_pred chhccCCCcccchhhhhHhhhccCcceeEEEEcCCce--------eccCcchhhhhhhhhhcCceecCCCCHHHHHH-HH Confidence 65222221111111110 000000111111110 11111112222211111 11111111100000 00 Q ss_pred eeeccc--hHH----HHh-hccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEE Q lcl|Aclame:pro 75 KPATDH--PLY----SIL-KYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPM 147 (419) Q Consensus 75 ~~~~~~--~~~----~lL-~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~ 147 (419) .....| .+. .+. ..+||+.+|+.+|++. +.+++++||||++++|+..|.+.+|+|++|.+|++..+.+++.. T Consensus 97 ~~~~~h~s~l~~k~n~l~~~~~Pnp~lT~~~f~~~-v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~ 175 (376) T protein:vir:10 97 RASTHHSSALFFKANVLASTFRPHRWLSRHAFERW-ALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFNGFVY 175 (376) T ss_pred hhhHHhhhhHHHHhHHHHhccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceEEEeeCCeEEE Confidence 000000 011 011 2479999999999865 56899999999999999999999999999999999988876655 Q ss_pred EEeecc-cccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 148 YRVAGA-DPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 148 ~~~~~~-~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) ....+. ..+++++|+|++.+ +.++++|+|++.++++.+.+..++..+..++|+||++|++++.+++ +.+++++.+ T Consensus 176 ~~~~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~~~d---~~l~~e~~~ 252 (376) T protein:vir:10 176 VNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTD---AAQKQDDVD 252 (376) T ss_pred EEcCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---CCCCHHHHH Confidence 443333 34778889999865 4688999999999999999999999999999999999999999863 345889999 Q ss_pred HHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNI 298 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~ 298 (419) +++++|++ +.|..|+++++++ ++|++|++++.++.|+||.|.+++++++||++|||||.++|+.++ ++++|. T Consensus 253 ~lr~~~~~-~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~sn~ 331 (376) T protein:vir:10 253 NMRDALKN-AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGGFGTP 331 (376) T ss_pred HHHHHHHH-hcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccH Confidence 99999987 6888899999998 578999999999999999999999999999999999999998664 468999 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHH Q lcl|Aclame:pro 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSS 350 (419) Q Consensus 299 e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~ 350 (419) |++.+.|+++||.|++++|+ +++.+|..+ .++|+...+++.|.+. T Consensus 332 eq~~~~f~~~~L~Pl~~~ie-eln~~L~~~------~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 332 DTAARVFGRNEIRPLQARFA-ELNDWLGEE------VVRFDDYEIPPAPVAA 376 (376) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhcccc------ccccChhHhhcccccC Confidence 99999999999999999998 588776322 4899999999999997 No 93 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=2.7e-51 Score=297.86 Aligned_cols=325 Identities=13% Similarity=0.102 Sum_probs=232.3 Q ss_pred CCccchhccccccccccc-----chHHHHhhcCCCcc---cccc-------cCHHHHhccHHHHHHHHHHHHhhc--cCC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS-----GGWVSALLGSARSE---AGQV-------VTPASALSLTVLQNCVTLLAESIA--QLP 63 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia--~~~ 63 (419) |.=+|..++......+.. .+.-...|..+.+. +... +..+++++-|.-+..+..+.+.-+ +-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhhh Confidence 773332222111111100 00001111111110 0000 000111111111111111100000 000 Q ss_pred eeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccc Q lcl|Aclame:pro 64 VELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD 143 (419) Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~ 143 (419) ++.+ .+-+. -..+||+.+|+.+|++ ++.+++++||||++++|+..|++.+|+|+++.+|++..+.+ T Consensus 81 l~~k-----------~n~l~--~~~~Pnp~~t~~~f~~-~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~~ 146 (351) T protein:vir:79 81 LFFK-----------ANVLA--STFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYVRRKADFS 146 (351) T ss_pred hhhh-----------hhHHh--hcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcceeeeecCC Confidence 0000 00111 1347999999999975 66799999999999999999999999999999999988888 Q ss_pred eeEEEEeecc-cccccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhH Q lcl|Aclame:pro 144 LKPMYRVAGA-DPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQ 221 (419) Q Consensus 144 ~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~ 221 (419) +++.....+. ..+++++|+|++.++ .++++|+|++..+++.+.+..++..+..++|+||++|++++..++ +.+++ T Consensus 147 ~~~~~~~~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~~~~---~~ls~ 223 (351) T protein:vir:79 147 GFVYVNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILYMTD---AAQKQ 223 (351) T ss_pred eEEEEecCceEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---CCCCH Confidence 7655544443 346778888888664 688999999999999999999999999999999999999999874 34588 Q ss_pred HHHHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cc Q lcl|Aclame:pro 222 ASVDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--AT 294 (419) Q Consensus 222 ~~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~ 294 (419) ++.++++++|++ ..|..|+++++++ ++|++++|++.++.|+||.|.+++++++||++|||||.++|+.++ ++ T Consensus 224 e~~~~lk~~~~~-~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi~~~~t~~ 302 (351) T protein:vir:79 224 DDVDNMRDALKN-AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGIVPSNSGG 302 (351) T ss_pred HHHHHHHHHHHH-hcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCC Confidence 999999999986 6788899999998 578999999999999999999999999999999999999998665 55 Q ss_pred cccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHH Q lcl|Aclame:pro 295 FSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSS 350 (419) Q Consensus 295 ~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~ 350 (419) ++|.|++.+.|+++||.|++.+||+ ++.+|.. ..++|+...+++.|.+. T Consensus 303 ~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg~------~~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 303 FGTPDTAARVFGRNEIRPLQARFAE-LNDWLGD------EVVTFDDYEIPPAPVAA 351 (351) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCc------ceeeeChhhhccccccC Confidence 8999999999999999999999975 7765521 24789999999999887 No 94 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=3.7e-51 Score=297.08 Aligned_cols=313 Identities=14% Similarity=0.124 Sum_probs=232.2 Q ss_pred CCccchhccccccccccc-----chHHHHhhcCCCcc--------------------cccccCHHHHh----ccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS-----GGWVSALLGSARSE--------------------AGQVVTPASAL----SLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------------------~~~~~~~~~~~----~~~~v~~~ 51 (419) |.=+|..++......+.. .+.-...|..+.+. -..+++..... .++-..+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhhh Confidence 773332222111111100 00001111111110 00111111100 11111122 Q ss_pred HHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 52 VTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) +...++.+ . -..+||+.||+++|++ ++.+++++||||++++|+..|++.+|+|+ T Consensus 81 l~~k~n~l-----------------------~--~~~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl 134 (351) T protein:vir:78 81 LFFKANVL-----------------------A--STFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPA 134 (351) T ss_pred hhhhhhHH-----------------------h--hcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEe Confidence 21111111 0 1347999999999975 45789999999999999999999999999 Q ss_pred cCceeEEEEccceeEEEEeec-ccccccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEE Q lcl|Aclame:pro 132 DNEAVTVMKGPDLKPMYRVAG-ADPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI 209 (419) Q Consensus 132 ~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~ 209 (419) ++.+|++..+.+++......+ ...+++++|+|++... .++++|+|++..+++.+.+..++..+..++|+||++|++++ T Consensus 135 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl 214 (351) T protein:vir:78 135 LAKYVRRKADFSGFVYVNGWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFIL 214 (351) T ss_pred cCcceEEeeeCCeEEEEecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEE Confidence 999999988887665444333 3347778888888654 68999999999999999999999999999999999999999 Q ss_pred EeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCH Q lcl|Aclame:pro 210 ERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPA 284 (419) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp 284 (419) ..++ +.+++++.++++++|++ ..|..|+|+++++ ++|++++|++.++.|+||.|.+++++++||++||||| T Consensus 215 ~~~~---~~ls~e~~~~lr~~~~~-~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp 290 (351) T protein:vir:78 215 YMTD---AAQKQDDVDNMRDALKN-AKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPP 290 (351) T ss_pred EecC---CCCCHHHHHHHHHHHHH-hcCcccccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCH Confidence 9863 34688999999999986 5888999999998 4789999999999999999999999999999999999 Q ss_pred HHcccccC--cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHH Q lcl|Aclame:pro 285 HMVNELER--ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSS 350 (419) Q Consensus 285 ~~~g~~~~--~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~ 350 (419) .++|+.++ ++++|.|++.+.|++++|.|++.+||+ ++.+|.. ..++|+...+++.|.+. T Consensus 291 ~llGi~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~~------~~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 291 QLLGIVPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLGD------EVVRFDDYEIPPAPVAA 351 (351) T ss_pred HHhcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcCc------cceecChhhhccccccC Confidence 99998665 458999999999999999999999985 7766532 24899999999999998 No 95 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=8.9e-52 Score=300.45 Aligned_cols=319 Identities=15% Similarity=0.150 Sum_probs=237.4 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc---cc-------ccccCHHHHhccHHHHHHHHHHHHhhcc--CCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS---EA-------GQVVTPASALSLTVLQNCVTLLAESIAQ--LPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------~~~~~~~~~~~~~~v~~~i~~ia~~ia~--~~~~~~~ 68 (419) |. .|+.+............ ...|..+.+ .. ...+..+.+++.|.-+.++..+.+.-+. -+++.+ T Consensus 1 m~-~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k- 76 (340) T protein:vir:98 1 MS-KRKPRKAVAMTASAPQK--MEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVK- 76 (340) T ss_pred CC-CCCCCccccccccCccc--eeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhh- Confidence 88 32221111111111111 111111110 00 0111223345555555555544333221 112111 Q ss_pred ecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEE Q lcl|Aclame:pro 69 RSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMY 148 (419) Q Consensus 69 ~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~ 148 (419) .+-+.. .-+||+.+|+.+|++ ++.+++++||||++++|+..|++.+|+|+++.+|++..+.+.++.+ T Consensus 77 ----------~n~l~~--~~~Pn~~lt~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~ 143 (340) T protein:vir:98 77 ----------RNVLAS--TYIPHPLLSRQDFSR-FALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDSVFWFV 143 (340) T ss_pred ----------hhHHhh--ccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCcEEEEE Confidence 011212 237999999999975 5579999999999999999999999999999999998777655544 Q ss_pred Eeecc-cccccceEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHH Q lcl|Aclame:pro 149 RVAGA-DPLPQRLVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDR 226 (419) Q Consensus 149 ~~~~~-~~~~~~~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419) ...+. ..+++++|+|++. ++.++++|+|++..+++++.+..++.++..++|+||++|++++.+++ +.+++++.++ T Consensus 144 ~~~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~---~~ls~e~~~~ 220 (340) T protein:vir:98 144 ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTD---PAQSATDVES 220 (340) T ss_pred ecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---CCCCHHHHHH Confidence 44333 3578889999985 45789999999999999999999999999999999999999999873 4468899999 Q ss_pred HHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccHH Q lcl|Aclame:pro 227 ITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNIE 299 (419) Q Consensus 227 ~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~e 299 (419) ++++|++ .+|..|.++++++ ++|+++++++.++.|+||.|.+++++++||++|||||.++|+.++ ++++|.| T Consensus 221 lk~~~~~-~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e 299 (340) T protein:vir:98 221 LRDAMRN-SKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVE 299 (340) T ss_pred HHHHHHH-hcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHH Confidence 9999987 5888899999998 578999999999999999999999999999999999999998654 4689999 Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 300 HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGD 347 (419) Q Consensus 300 ~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d 347 (419) ++.+.|+++||.|++++|| +++.+|..+ .++|+...+++.| T Consensus 300 ~~~~~f~~~~l~Pl~~~ie-e~n~~L~~e------~~rF~~~~l~~~d 340 (340) T protein:vir:98 300 KVAKVFVRNELSPLQDRFR-EVNDWLGME------VIRFKEYTLDNPE 340 (340) T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhccccc------ccccCccccccCC Confidence 9999999999999999998 488877433 2678888888888 No 96 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=3.4e-51 Score=297.27 Aligned_cols=324 Identities=16% Similarity=0.134 Sum_probs=235.5 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccc---cccC--------HHHHhccHHHHHHHHHHHHhhccCCeeEeee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAG---QVVT--------PASALSLTVLQNCVTLLAESIAQLPVELYER 69 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~ 69 (419) |. |+.++............-...|+.+....- ..++ .+.+++-|.-+.. +|+.+-..+.+ T Consensus 1 m~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~---la~l~~~~~~h---- 71 (346) T protein:vir:10 1 MK--KQLRKNLTQNDRLQPQAQTEIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDG---LAKSLRSSTHH---- 71 (346) T ss_pred CC--cccCCCCCcccccccccCeEEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHH---HHHHHHhhhhc---- Confidence 77 222122111111111111122332221110 0000 0001111111122 22222222211 Q ss_pred cCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEE Q lcl|Aclame:pro 70 SGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYR 149 (419) Q Consensus 70 ~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~ 149 (419) .....+..|.+..++ .+||++||+.+|++ ++.+++++||||+++.|+..|++.+|+|+++..|++..+.+++..+. T Consensus 72 --~~~i~~k~n~l~~l~-~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~~~~~ 147 (346) T protein:vir:10 72 --ESAIITKANILLSTC-EVDSRYLSRRDLSS-FVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQFYYVP 147 (346) T ss_pred --chhhhhhhhhHHHHH-hCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeEEEEE Confidence 011123345666666 47999999999987 56789999999999999999999999999999999988777654333 Q ss_pred e--ec-ccccccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 150 V--AG-ADPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 150 ~--~~-~~~~~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) . .+ ...+++++|+|++..+ .++++|+|++..+++.+.+..++.++..++|.||++|++++++++ +.+++++.+ T Consensus 148 ~~~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d---~~l~~e~~~ 224 (346) T protein:vir:10 148 QRFDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSD---ASQKQEDVE 224 (346) T ss_pred EccCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCC---CCCCHHHHH Confidence 2 22 2457888999998775 478999999999999999999999999999999999999998864 345789999 Q ss_pred HHHHHHHHHhccccccCcceecC-----CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALLQ-----EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNI 298 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~ 298 (419) +++++|++. .|..|+|+++++. .|+++++++.++.|+||.|.+++++++||++|||||.++|+.++ +++++. T Consensus 225 ~i~~~~~~~-~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~ 303 (346) T protein:vir:10 225 NIRQQLKQS-KGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNV 303 (346) T ss_pred HHHHHHHHh-cCccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccH Confidence 999999886 5678999999985 47899999999999999999999999999999999999998665 458999 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccH Q lcl|Aclame:pro 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQ 348 (419) Q Consensus 299 e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~ 348 (419) |++.+.|++++|.|++++||+ ++.+|.. ..++|+...+++.|. T Consensus 304 e~~~~~f~~~~l~P~~~~iee-~n~~L~~------e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 304 ADAAEVFFITEIEPLQERLKE-FNQWLGQ------EVIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhccc------ceeeechhhhcccCC Confidence 999999999999999999985 6766633 247899999999888 No 97 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=1.5e-51 Score=299.21 Aligned_cols=321 Identities=12% Similarity=0.072 Sum_probs=236.0 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHH---hhccCCeeEeeecCCcceee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAE---SIAQLPVELYERSGDDRKPA 77 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~---~ia~~~~~~~~~~~~~~~~~ 77 (419) |.=.+..+......++ ...|..+.+ +..+...+++.|+...-+ ..-.-|+....-.+ -.+. T Consensus 1 m~~~~~~~~~~~~~~~------~~~~~~~~p--------~~~~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~--l~~~ 64 (337) T protein:vir:78 1 MTKRQQQPAQAAASSP------RPSVVFSMP--------EAIDPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAK--VARA 64 (337) T ss_pred CCCcccCcccccccCc------eeEEEecCc--------ccccCcchhHhhhhhhhccCcceecCCCCHHHHHH--Hhhc Confidence 7622222111111111 111222111 111222333334333322 22233433211000 0011 Q ss_pred ccchHHHHhhccccccCCHH----HHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeecc Q lcl|Aclame:pro 78 TDHPLYSILKYEPNPWQTPF----EYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGA 153 (419) Q Consensus 78 ~~~~~~~lL~~~pn~~~s~~----~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 153 (419) ......+|..+||+.++++ ++++.++.+++++||||++++|+..|++.+|+|+++.+|++..+.+.++....... T Consensus 65 -~~~h~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~~~~~~~~~~~~ 143 (337) T protein:vir:78 65 -NAHHGAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDGCFVYLQQGKPN 143 (337) T ss_pred -chhhhhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCCeEEEEEcCCce Confidence 1112346778999876654 68899999999999999999999999999999999999998877665554444445 Q ss_pred cccccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHH Q lcl|Aclame:pro 154 DPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWN 232 (419) Q Consensus 154 ~~~~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (419) ..+++++|+|++.++ .++++|+|++..+++.+.++.++.++..++|+||++|++++..++ +.+++++.+++++.|+ T Consensus 144 ~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~---~~l~~e~~~~lk~~~~ 220 (337) T protein:vir:78 144 LIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATD---PNMDDDTEEEMKEMIA 220 (337) T ss_pred EEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCC---CCCCHHHHHHHHHHHH Confidence 567889999999765 689999999999999999999999999999999999999998864 3458899999999997 Q ss_pred HHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC---cccccHHHHHHH Q lcl|Aclame:pro 233 AKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER---ATFSNIEHQSLQ 304 (419) Q Consensus 233 ~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~---~~~sn~e~~~~~ 304 (419) + +.|..|.++++++ ++|+++++++.++.|+||+|.+++++++||++|||||.++|+..+ ++++|.|++.+. T Consensus 221 ~-~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~~ 299 (337) T protein:vir:78 221 N-SKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDAT 299 (337) T ss_pred H-hcCcccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHHH Confidence 6 6788899999888 578999999999999999999999999999999999999997543 467889999999 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLL 344 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~ 344 (419) |+++||.|++.+||+++++++++.... ..+++....++ T Consensus 300 f~~~~L~P~~~~ie~~~n~~ll~~~~~--~~f~~~~~~~~ 337 (337) T protein:vir:78 300 YARNEVLPLCELVQDAINSAGLPRALW--VTFRETIGAAV 337 (337) T ss_pred HHHHHHHHHHHHHHHHHhhhcCChhhc--eeccccccccC Confidence 999999999999999999988865432 23455555555 No 98 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=9.6e-51 Score=294.79 Aligned_cols=243 Identities=15% Similarity=0.155 Sum_probs=201.1 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+||++..++.....+.........++......+..++.+.|+++|+|++||++||++||++|++++++.+ ....| T Consensus 1 MglF~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~----~~~~~ 76 (251) T protein:vir:46 1 MGIFYKNEKRDLQYNEDDLQMMVQTLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQ----INYSD 76 (251) T ss_pred CCccccccccccCCCccchhhhhhhhccccCcCcceechhhhhccHHHHHHHHHHHHhHhhCceEEeeCcc----ccccc Confidence 99775543322222222212222334444445567789999999999999999999999999999987544 33469 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeec-------- Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAG-------- 152 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~-------- 152 (419) ++.++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+|++|++|++..+.++...+++.. T Consensus 77 ~~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~g~ 156 (251) T protein:vir:46 77 RIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNI 156 (251) T ss_pred hHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEeccCCcce Confidence 999999999999999999999999999999999999999999999999999999999999887665554421 Q ss_pred ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHH Q lcl|Aclame:pro 153 ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWN 232 (419) Q Consensus 153 ~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (419) ...+++++|+|+++++.|+++|+||+..+..++.++.+++++..++|+||++|++++++++... ++++.+++++.|+ T Consensus 157 ~~~~~~~diiH~r~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~---~~e~~~~~~~~~~ 233 (251) T protein:vir:46 157 ERNVKFEDMLDIKFYSLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLD---NKKARDRAREEFP 233 (251) T ss_pred eEEECCccEEEecCcCCCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCC---CHHHHHHHHHHHH Confidence 2467889999999999999999999999999999999999999999999999999999986543 5678899999999 Q ss_pred HHhccccccCcceecCCCcee Q lcl|Aclame:pro 233 AKFGGSGNAKKVALLQEGMKF 253 (419) Q Consensus 233 ~~~~g~~n~g~~~vl~~g~~~ 253 (419) +.++|.+|+|++.+ ||+= T Consensus 234 ~~~~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 234 KVLVELNKLGKLSY---SMNQ 251 (251) T ss_pred HHhcCccccccccc---ccCC Confidence 99999999998776 3321 No 99 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=7.8e-50 Score=289.80 Aligned_cols=322 Identities=15% Similarity=0.139 Sum_probs=226.3 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcc---ccc-------ccCHHHHhccHHHHHHHHHHHHhh--ccCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSE---AGQ-------VVTPASALSLTVLQNCVTLLAESI--AQLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~v~~~i~~ia~~i--a~~~~~~~~ 68 (419) |.=.++..............-....|..+.+. +.. .+..+.+++-|.-+.++..+.+.- .+-+++.++ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:60 1 MSKKKGKTLQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCCchHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhhhh Confidence 76222111111100001111011112211110 000 011122222222233322221111 112222210 Q ss_pred ecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEE Q lcl|Aclame:pro 69 RSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMY 148 (419) Q Consensus 69 ~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~ 148 (419) +-+.. ..+||+.||+.+| +.++.+++++||||++++|+..|++.+|+|+++.+|++..+.+.++.. T Consensus 81 -----------n~l~~--~~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~~~~v 146 (344) T protein:vir:60 81 -----------NILAS--TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWV 146 (344) T ss_pred -----------hHHHh--hccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCeEEEE Confidence 11222 2479999999999 567899999999999999999999999999999999998888766544 Q ss_pred Eeecc-cccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHH Q lcl|Aclame:pro 149 RVAGA-DPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDR 226 (419) Q Consensus 149 ~~~~~-~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419) ...+. ..+++++|+|++.+ +.++++|+||+..+++++.+..++.++..++|.||++|++++.+++ +.++++++++ T Consensus 147 ~~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~---~~ls~e~~~~ 223 (344) T protein:vir:60 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEM 223 (344) T ss_pred ccCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---cCCCHHHHHH Confidence 44333 35778889999865 4689999999999999999999999999999999999999999863 3468899999 Q ss_pred HHHHHHHHhccccccCcceec------CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccH Q lcl|Aclame:pro 227 ITDGWNAKFGGSGNAKKVALL------QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNI 298 (419) Q Consensus 227 ~~~~~~~~~~g~~n~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~ 298 (419) ++++|++.+ |. ++++.+++ .+|+++++++.++.|+||.|.+++++++||++|||||.++|+.++ ++++|. T Consensus 224 ik~~~~~~~-g~-~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~ 301 (344) T protein:vir:60 224 LRENMVKSK-GR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDI 301 (344) T ss_pred HHHHHHHhc-CC-CCCcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccH Confidence 999999876 44 45677766 479999999999999999999999999999999999999998664 458999 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccH Q lcl|Aclame:pro 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQ 348 (419) Q Consensus 299 e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~ 348 (419) |++.+.|++++|.|++++|| +++.+|-.+ .++|+.-.+...|- T Consensus 302 e~~~~~f~~~~L~Pl~~~~e-~ln~~lg~~------~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 302 EKVAKVFVRNELIPLQDRIR-EINGWLGQE------VIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhcCCc------ccccCccccCCCCC Confidence 99999999999999999998 588877332 24555555554444 No 100 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=8.2e-50 Score=289.68 Aligned_cols=321 Identities=12% Similarity=0.090 Sum_probs=225.1 Q ss_pred CCccchhcccccccccccch--------HHHHhhcCCCcc---ccccc-------CHHHHhccHHHHHHHHHHHH--hhc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGG--------WVSALLGSARSE---AGQVV-------TPASALSLTVLQNCVTLLAE--SIA 60 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~v~~~i~~ia~--~ia 60 (419) |.=.++.........+.... --...|..+.+. ++..+ ..+.++.-|.-+..+..+.+ ... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~~~h 80 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDPMPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSSVYL 80 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCceeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhhhhh Confidence 76222211111001100000 001111211110 01000 00111111111222111100 000 Q ss_pred cCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEE Q lcl|Aclame:pro 61 QLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMK 140 (419) Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~ 140 (419) +-++..+ .+-+. ...+||+++|+++|++ ++.+++++||||++++|+..|++.+|+|+++.+|++.. T Consensus 81 ~~~l~~k-----------~n~l~--~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~ 146 (350) T protein:vir:11 81 QSGLKFK-----------RNMLA--KTFIPHRLLSRATFEQ-FSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGT 146 (350) T ss_pred ccchhhh-----------hhhhh--hcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeee Confidence 1111110 01111 1348999999999986 56799999999999999999999999999999999988 Q ss_pred ccceeEEEEeec-ccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCch Q lcl|Aclame:pro 141 GPDLKPMYRVAG-ADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPAL 218 (419) Q Consensus 141 ~~~~~~~~~~~~-~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~ 218 (419) +.+.++.+...+ ...+++++|+|++.. +.++++|+|++..+++.+.+..++..+..++|+||+.|++++++++ +. T Consensus 147 ~~~~~~~~~~~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~---~~ 223 (350) T protein:vir:11 147 DLETFYQVRSWKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTD---AA 223 (350) T ss_pred cCCeEEEEeeCCeEEEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---CC Confidence 877655444433 345778889999865 5678999999999999999999999999999999999999999874 34 Q ss_pred hhHHHHHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC- Q lcl|Aclame:pro 219 KDQASVDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER- 292 (419) Q Consensus 219 ~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~- 292 (419) +++++++++++.|++. .|..|+|+++++ ++|+++++++.++.|+||.|.+++++++||++|||||.++|+.++ T Consensus 224 ls~e~~~~l~~~~~~~-~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~ 302 (350) T protein:vir:11 224 QNEEDIDALRTALKTA-KGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQN 302 (350) T ss_pred CCHHHHHHHHHHHHHh-cCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCC Confidence 6889999999999885 777899999988 468999999999999999999999999999999999999998655 Q ss_pred -cccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhh Q lcl|Aclame:pro 293 -ATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGL 343 (419) Q Consensus 293 -~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~ 343 (419) ++++|.|++.+.|++++|.|++.+|| +++.+|..+.. ....|++.++ T Consensus 303 t~~~sn~e~~~~~f~~~~L~P~~~~ie-~ln~~l~~~~~---~F~~~~~~~l 350 (350) T protein:vir:11 303 AGGFGSISDAAAVWASLELAPMQTRLQ-QVNEMIGEEVV---RFAQFDAPGL 350 (350) T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHH-HHHhhcCcccc---ccCcccccCC Confidence 56899999999999999999999998 58887754321 1235666666 No 101 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=1e-49 Score=289.21 Aligned_cols=322 Identities=15% Similarity=0.147 Sum_probs=227.4 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcc---ccc-------ccCHHHHhccHHHHHHHHHHH--HhhccCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSE---AGQ-------VVTPASALSLTVLQNCVTLLA--ESIAQLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~v~~~i~~ia--~~ia~~~~~~~~ 68 (419) |.=+|.........+.....--...|..+.+. ++. .+..+.+++=|.-+.++..+. +...+-+++.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k~ 80 (344) T protein:vir:20 1 MSKKKGKTPQPAAKTMTASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCcccCCCCcchhhhhhccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccceehh Confidence 77222211111111111110001111111110 000 001122222222233322221 111122232211 Q ss_pred ecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEE Q lcl|Aclame:pro 69 RSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMY 148 (419) Q Consensus 69 ~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~ 148 (419) +-+.. .-+||+.||+.+| +.++.+++++||||++++|+..|++++|+|+++.+|++..+.+.++.. T Consensus 81 -----------n~l~~--~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~~~~~~ 146 (344) T protein:vir:20 81 -----------NILAS--TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWV 146 (344) T ss_pred -----------hhHHH--hccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCCEEEEE Confidence 11222 2379999999999 577889999999999999999999999999999999998887765544 Q ss_pred Eeecc-cccccceEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHH Q lcl|Aclame:pro 149 RVAGA-DPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDR 226 (419) Q Consensus 149 ~~~~~-~~~~~~~i~~~~~~~-~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419) ...+. ..+++++|+|++.++ .++++|+|++..+++++.+..++.++..++|+||++|++++.+++ +.++++++++ T Consensus 147 ~~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d---~~l~~e~~~~ 223 (344) T protein:vir:20 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEM 223 (344) T ss_pred ccCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---cCCCHHHHHH Confidence 43332 457788999998765 689999999999999999999999999999999999999999863 3468899999 Q ss_pred HHHHHHHHhccccccCcceec------CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccH Q lcl|Aclame:pro 227 ITDGWNAKFGGSGNAKKVALL------QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNI 298 (419) Q Consensus 227 ~~~~~~~~~~g~~n~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~ 298 (419) ++++|++.++ . ++++.+++ .+|++|++++.++.|+||.|.+++++++||++|||||.++|+.++ ++++|. T Consensus 224 ik~~~~~~~g-~-~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~ 301 (344) T protein:vir:20 224 LRENMVKSKG-R-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDI 301 (344) T ss_pred HHHHHHHhcC-C-CCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccH Confidence 9999998753 3 55777776 469999999999999999999999999999999999999998654 458999 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccH Q lcl|Aclame:pro 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQ 348 (419) Q Consensus 299 e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~ 348 (419) |++.+.|++++|.|++.+|+ +++.+|..+ .++|+...+...|. T Consensus 302 e~~~~~f~~~~l~P~~~~~e-~in~~lg~~------~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 302 EKVAKVFVRNELIPLQDRIR-EINGWLGQE------VIRFKNYSLDTDND 344 (344) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhcCCc------ccccCccccccCCC Confidence 99999999999999999998 578776432 25566555655555 No 102 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=3e-49 Score=286.59 Aligned_cols=321 Identities=11% Similarity=0.082 Sum_probs=226.9 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcc-------cccc-cCHHHHhccHHHHHHHHHHH--HhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSE-------AGQV-VTPASALSLTVLQNCVTLLA--ESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~v~~~i~~ia--~~ia~~~~~~~~~~ 70 (419) |-=.+........+.... -...|+.+... .... ...+.+++-|.-+..+..+. +..-+-++... T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~k--- 74 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPI---NDRTFSLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSR--- 74 (345) T ss_pred CCccccccchhhhcCCCc---eEEEeecCCcccchhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhhh--- Confidence 441111111111111000 01111111000 0000 01112233332222222221 11111111110 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEe Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRV 150 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~ 150 (419) .+-+ +.+.+||+.||+.+|++ ++.+++++||||++++|+..|.+.+|+|+++.+|++..+.+....... T Consensus 75 --------~n~l--~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~ 143 (345) T protein:vir:37 75 --------ANMV--SATYEGGKALSKMEMRA-LCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDGGYSYLMKK 143 (345) T ss_pred --------hhHH--hhccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecCCeeEEEee Confidence 0111 22448999999999975 557899999999999999999999999999999998887765543322 Q ss_pred ------ecccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHH Q lcl|Aclame:pro 151 ------AGADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQAS 223 (419) Q Consensus 151 ------~~~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~ 223 (419) .....+++++|+|++.+ +.++++|+|++..+++.+.+..++.++..++|+||++|++++..++ +.+++++ T Consensus 144 ~~~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~---~~l~~e~ 220 (345) T protein:vir:37 144 SLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTD---PDLTEEM 220 (345) T ss_pred eeeccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCC---CCCCHHH Confidence 11234678889999865 5688999999999999999999999999999999999999998763 3458899 Q ss_pred HHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccc Q lcl|Aclame:pro 224 VDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFS 296 (419) Q Consensus 224 ~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~s 296 (419) .++++++|++.+++ .|.+.++++ ++|+++++++.++.|+||.+.+++++++||++|||||.++|+.++ ++++ T Consensus 221 ~~~lk~~~~~~~g~-~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s 299 (345) T protein:vir:37 221 EEEIARKISESKGV-GNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLG 299 (345) T ss_pred HHHHHHHHHHhcCc-cccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcc Confidence 99999999998654 566666665 467999999999999999999999999999999999999998654 5689 Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 297 NIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLR 345 (419) Q Consensus 297 n~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~ 345 (419) ++|++.+.|+++||.|++.+|++++|+.+ ....+..++||...+.+ T Consensus 300 ~~e~~~~~f~~~~l~P~~~~ie~~ln~~~---e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 300 DPLKYREVYHYDEVMPLQEIIAETINQDP---EIKNLLKIKFREQNFAK 345 (345) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccCCcceEEECchhhcC Confidence 99999999999999999999999999742 12346789999988887 No 103 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=1.3e-49 Score=288.62 Aligned_cols=322 Identities=15% Similarity=0.136 Sum_probs=225.7 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcc---cccc-------cCHHHHhccHHHHHHHHHHHHhhc--cCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSE---AGQV-------VTPASALSLTVLQNCVTLLAESIA--QLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~v~~~i~~ia~~ia--~~~~~~~~ 68 (419) |.=++.........+.....--...|..+... ++.. +..+.+++=|.-+.++..+.+.-+ +-+++.++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~~k~ 80 (344) T protein:vir:56 1 MSKKKGKTPQPAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKR 80 (344) T ss_pred CCCCCCCCCchhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCccceehh Confidence 76222211111111100000001112211110 0000 011122222333333333322211 22222211 Q ss_pred ecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEE Q lcl|Aclame:pro 69 RSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMY 148 (419) Q Consensus 69 ~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~ 148 (419) +-+.. .-+||+++|+.+| +.++.+++++||||++++|+..|++.+|+|+++.+|++..+.+.++.. T Consensus 81 -----------n~l~~--~~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~~~~~ 146 (344) T protein:vir:56 81 -----------NILAS--TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWV 146 (344) T ss_pred -----------hhHHh--hcCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCEEEEE Confidence 11222 2479999999999 567889999999999999999999999999999999998887765544 Q ss_pred Eeecc-cccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHH Q lcl|Aclame:pro 149 RVAGA-DPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDR 226 (419) Q Consensus 149 ~~~~~-~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419) ...+. ..+++++|+|++.. +.++++|+|++..+++.+.+..++.++..++|+||++|++++.+++ +.++++++++ T Consensus 147 ~~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d---~~ls~e~~~~ 223 (344) T protein:vir:56 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTD---AVQDRNDIEM 223 (344) T ss_pred ecCCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecC---CCCCHHHHHH Confidence 43333 35778889999865 5789999999999999999999999999999999999999999863 3458899999 Q ss_pred HHHHHHHHhccccccCcceec------CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccccH Q lcl|Aclame:pro 227 ITDGWNAKFGGSGNAKKVALL------QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFSNI 298 (419) Q Consensus 227 ~~~~~~~~~~g~~n~g~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~sn~ 298 (419) ++++|++.. |. ++|+++++ ++|+++++++.++.|+||+|.+++++++||++|||||.++|+.++ ++++|. T Consensus 224 lk~~~~~~~-g~-~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~ 301 (344) T protein:vir:56 224 LRENMVKSK-GR-NNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDI 301 (344) T ss_pred HHHHHHHhc-CC-CCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccH Confidence 999999875 43 66888887 479999999999999999999999999999999999999998665 458999 Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccH Q lcl|Aclame:pro 299 EHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQ 348 (419) Q Consensus 299 e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~ 348 (419) |++.+.|+++||.|++++|| +++.+|..+. ++|+.-.+...|- T Consensus 302 eq~~~~f~~~tL~Pl~~~ie-~~n~~l~~~~------~~F~~y~l~~~~~ 344 (344) T protein:vir:56 302 EKVAKVFVRNELIPLQDRIR-EINGWIGQEV------IRFKNYSLDTDNG 344 (344) T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhhcccc------ccCCCccccccCC Confidence 99999999999999999998 5888775432 3343333332222 No 104 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=3.5e-49 Score=286.27 Aligned_cols=321 Identities=12% Similarity=0.079 Sum_probs=230.7 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccc-------cc-cCHHHHhccHHHHHHHHHHHHhhc--cCCeeEeeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAG-------QV-VTPASALSLTVLQNCVTLLAESIA--QLPVELYERS 70 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~v~~~i~~ia~~ia--~~~~~~~~~~ 70 (419) |-=.+........+.... -...|+.+..... .. ...+.+++-|.-+.++..+.+.-+ +-.+.. T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~---- 73 (345) T protein:vir:37 1 MKTNVKTDNKKGIVIAPI---NDRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS---- 73 (345) T ss_pred CCCCccccchhhcccCcc---eeEEeecCCcccccchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceee---- Confidence 542111111111111100 0111221111100 00 011223333333333333322111 111111 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEe Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRV 150 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~ 150 (419) ++.... ..-+||++||+++|++. +.+++++||||++++|+..|++.+|+|+++.+|++..+.+....+.. T Consensus 74 --------k~n~l~-~~~~Pn~~lt~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~ 143 (345) T protein:vir:37 74 --------RANMVS-SLYEGGKALSRMDMRAL-CLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMKK 143 (345) T ss_pred --------echHHH-hhccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeEEEEE Confidence 112222 23479999999999865 57899999999999999999999999999999999888776554332 Q ss_pred e------cccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHH Q lcl|Aclame:pro 151 A------GADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQAS 223 (419) Q Consensus 151 ~------~~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~ 223 (419) . ....+++++|+|++.. +.++++|+|++..+++.+.+..++.+++.++|+||++|+++|.+++ +.+++++ T Consensus 144 ~~~~~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d---~~l~~e~ 220 (345) T protein:vir:37 144 SLYDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTD---PDLTEEM 220 (345) T ss_pred eEecCCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecC---CCCCHHH Confidence 1 1235778889999865 5788999999999999999999999999999999999999999863 3458899 Q ss_pred HHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC--cccc Q lcl|Aclame:pro 224 VDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER--ATFS 296 (419) Q Consensus 224 ~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~--~~~s 296 (419) +++++++|++ ..|..|.++++++ ++|++++|++.++.|+||.|.+++++++||++|||||.++|..++ ++++ T Consensus 221 ~~~lk~~~~~-~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~ 299 (345) T protein:vir:37 221 EEEIARKISE-SKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLG 299 (345) T ss_pred HHHHHHHHHH-hcCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcc Confidence 9999999987 4777888888887 579999999999999999999999999999999999999998554 5689 Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 297 NIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLR 345 (419) Q Consensus 297 n~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~ 345 (419) +.|++.+.|++++|.|++++|++++++.+. ......++||...+.+ T Consensus 300 ~~e~~~~~f~~~~l~P~~~~ie~~ln~~~~---~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 300 DPLKYREVYHYDEVMPLQEIIAETINQDPE---IKNLLKIKFREQNFAK 345 (345) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCCcceEEecchhhcC Confidence 999999999999999999999999997432 2234567888777665 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=1.1e-41 Score=245.18 Aligned_cols=205 Identities=12% Similarity=0.150 Sum_probs=165.2 Q ss_pred eEEEEccceeEEEEe------ecccccccceEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 136 VTVMKGPDLKPMYRV------AGADPLPQRLVHHVRWM-SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGV 208 (419) Q Consensus 136 v~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~-~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~ 208 (419) |++..+.+..+.+.. .....+.+++|+|++.+ +.++++|+||+..++.++....++.+|+.++|+||++|+++ T Consensus 1 ~r~~~dg~~~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p~gi 80 (219) T protein:vir:98 1 MRVCKDGNYKYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHMGFI 80 (219) T ss_pred CceeecCeEEEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceE Confidence 222222222222211 11345778899999965 57999999999999999999999999999999999999999 Q ss_pred EEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 209 IERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIP 283 (419) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp 283 (419) +++++ +.+++++++++++.|++. .|..|+++++++ ++|++|++++++++|+||+|++++++++||++|||| T Consensus 81 l~~~~---~~l~~e~~~~~~~~~~~~-~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVP 156 (219) T protein:vir:98 81 LYSTD---PDMTEEMEDEIAERIRDS-KGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFP 156 (219) T ss_pred EEeCC---CCCCHHHHHHHHHHHHHh-cCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCC Confidence 98874 345889999999999885 577787777776 568999999999999999999999999999999999 Q ss_pred HHHccccc--CcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 284 AHMVNELE--RATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGD 347 (419) Q Consensus 284 p~~~g~~~--~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d 347 (419) |.++|..+ +++++|+|++.+.|+++||.|++++||++||++++.+.. .+++|+.+...-.+ T Consensus 157 p~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~~~---~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 157 PGLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIKSA---LKVNFKQPEKRDKN 219 (219) T ss_pred HHHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCc---cEEeecCcccccCC Confidence 99999754 567999999999999999999999999999998665533 34666655443333 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.93 E-value=4.4e-26 Score=159.61 Aligned_cols=390 Identities=12% Similarity=-0.010 Sum_probs=226.0 Q ss_pred CCccchhcccc-cccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeecc Q lcl|Aclame:pro 1 MFFSRQLLSNL-GQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATD 79 (419) Q Consensus 1 M~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~ 79 (419) |.+-+.+.... +...+....+.. ++.........+ ...|.+++.++++|+.+|+++.+-++.+...+.+. ... T Consensus 1 ~~~~D~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~l-~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~~d~~~---~~~ 74 (437) T protein:vir:52 1 MKFFDGIKSLALKLGSKQEQTYYS--PSLSLTDDLVQL-EALWRDNWIANKVCIKRPEDMVRNWREIYSNDLNS---KQL 74 (437) T ss_pred CchhhhhHhHHhcCCCccccceee--cCccccccHHHH-HHHHHhCchhhHHhhcchHHhhcCCceEecCCCCH---HHH Confidence 65544332211 011111101111 111111111111 12356789999999999999999999985421111 111 Q ss_pred chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC---------CCceEEEEEecCceeEEEEcc--c----- Q lcl|Aclame:pro 80 HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ---------DGVIQGLYPLDNEAVTVMKGP--D----- 143 (419) Q Consensus 80 ~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~---------~G~~~~l~~~~~~~v~~~~~~--~----- 143 (419) ..+...+. +- ...+-+..++.+.-++|.|++++..+. .|.+..+.++++..+++.... + T Consensus 75 ~~~~~~~~-~l----~~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~ 149 (437) T protein:vir:52 75 DLFTKFER-SL----KLRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPN 149 (437) T ss_pred HHHHHHHH-hh----cHHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccc Confidence 12223332 11 234555566777778999999998765 367888999999988753221 1 Q ss_pred -eeE-EEEeecc---cccccceEEEecCC----CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC Q lcl|Aclame:pro 144 -LKP-MYRVAGA---DPLPQRLVHHVRWM----SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD 214 (419) Q Consensus 144 -~~~-~~~~~~~---~~~~~~~i~~~~~~----~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~ 214 (419) +.. .|.+.+. ..+.++.|+|+... +.+.+.|.|+++.+...+.....+......++.+.... ++++++. T Consensus 150 fg~p~~y~v~~~~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~--v~k~~~l 227 (437) T protein:vir:52 150 FGRYSEYSILGGSQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKID--IFKIAGL 227 (437) T ss_pred cCcceEEEEecCCcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--ceecchH Confidence 122 2333332 24677788888643 34567899999999999999999888888887776544 3444431 Q ss_pred ---CCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc Q lcl|Aclame:pro 215 ---APALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE 291 (419) Q Consensus 215 ---~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~ 291 (419) +... .++.+.+..+.+.. . .+.+++++++.+.+|+.++.++.++ .+.......+||++++||..++.+.. T Consensus 228 ~~~l~~~-~~~~~~~~~~~~~~---~-~~~~~~~~~d~~~~~e~~~~~~sgl--~~~l~~~~~~iaaa~~iP~t~L~G~s 300 (437) T protein:vir:52 228 SDKIAAG-MENEVASVISAVQE---I-KSATNSLLLDAENEYDRKELTFTGL--KDLLTEFRNAVAGAADMPVTILFGQS 300 (437) T ss_pred HHHhcCC-cHHHHHHHHHHHHH---h-cCCCceEEEcCCcceEEEecCcCCH--HHHHHHHHHHHHHHhcCchhhhcCcC Confidence 1111 23334443333332 2 2346789999998999888776654 46777888999999999998876665 Q ss_pred CcccccHHHHHHHHHH-------HHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHH-------HHHH Q lcl|Aclame:pro 292 RATFSNIEHQSLQFVI-------YTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYA-------AYAV 357 (419) Q Consensus 292 ~~~~sn~e~~~~~~~~-------~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~-------~~~~ 357 (419) .+..++.++..+.|+. .-+.|.++.+..-+-+..+.+.. ..+.|.++.+...+.+++++ .+.+ T Consensus 301 ~~Glasge~D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~~~---~~~~~~f~pL~~~s~kekae~~~~~a~a~~~ 377 (437) T protein:vir:52 301 VSGLASGDEDIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGGLP---ADWWFEFVPLTTVKQEQQINMLNTFATAANT 377 (437) T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CcceEEeCCcCCcCHHHHHHHHHHHHHHHHH Confidence 6566777878888887 45677777776666555544321 12455555676677555554 5777 Q ss_pred HHhCCCcCHHHHHHHh----CCCCCCCcceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 358 GRQWGWLSINDIRRLE----NMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 358 ~~~~g~~T~NE~R~~l----Gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) ++.+|+++++|+|++| .++.++..|.--...+-.+.++..+.+.....+...+.+| T Consensus 378 ~~~~g~i~~~e~r~~L~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (437) T protein:vir:52 378 LIQNGVLNEYQIANELRESGLFANISAEHIEELKNADEFAGNFEEPEKMEGAQVQNSEDQ 437 (437) T ss_pred HHhcCCCCHHHHHHHHHhcCCCCCCCccccccccCCCCCCCccCCCCCCCCCCCCCCCCC Confidence 8899999999999987 3444544332111111111111111111111111111222 No 107 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.89 E-value=2.3e-23 Score=144.73 Aligned_cols=399 Identities=11% Similarity=0.042 Sum_probs=214.4 Q ss_pred CCccchh-------cccccc--cccccchHHHHhh---cC---------C--CcccccccCHHHHhccHHHHHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQL-------LSNLGQ--TQPGSGGWVSALL---GS---------A--RSEAGQVVTPASALSLTVLQNCVTLLAE 57 (419) Q Consensus 1 M~f~~~~-------~~~~~~--~~~~~~~~~~~~~---~~---------~--~~~~~~~~~~~~~~~~~~v~~~i~~ia~ 57 (419) |-..... .+.... ..... .....+. +. + ....+..+ ...|.+++.++.+|+.+|. T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~a~Y~~~~l~r~iVd~~A~ 125 (537) T protein:vir:10 48 MAIRDHAIAMMPKVDGSHPDMAMDGLD-VEGGTFSAYANPNLSEGLVLWYAQQAFIGHQM-CALIATHWLVNKACSQMPR 125 (537) T ss_pred CCCCCccCcccccccccccchhccccc-cchhhhhhhccccccchhhhhccccCCccHHH-HHHHHhCchhhhhhhhhhH Confidence 1111100 000000 00000 0000000 00 0 00011111 1234579999999999999 Q ss_pred hhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEee---c-------------C Q lcl|Aclame:pro 58 SIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR---D-------------Q 121 (419) Q Consensus 58 ~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~---~-------------~ 121 (419) ++..-++.+....++... ......|........ ..+-+..++.+..++|.+++++.- + . T Consensus 126 d~~r~~~~i~~~~~~~~~----~~~~~~l~~~~~~l~-~~~~l~~a~~~~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~ 200 (537) T protein:vir:10 126 DAMRKGYKIISDDGNELD----PKDAKFIDRYDRAFN-IKKHAIQFVRKGRIFGIRIALFKVDSPDPYYYEKPFNIDGVM 200 (537) T ss_pred HhhcCCceeecCCccccc----HHHHHHHHHHHHHhh-HHHHHHHHHHhcccccceEEEEeecCcCCccccccccccccc Confidence 999999888544332221 122233332222222 234445555666678998887642 1 1 Q ss_pred CCceEEEEEecCceeEEEEc----cc------eeEEEEeecccccccceEEEecCCC-------CCCcccccHHHHHHHH Q lcl|Aclame:pro 122 DGVIQGLYPLDNEAVTVMKG----PD------LKPMYRVAGADPLPQRLVHHVRWMS-------INGYTGLSPVLLHANA 184 (419) Q Consensus 122 ~G~~~~l~~~~~~~v~~~~~----~~------~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~G~s~~~~~~~~ 184 (419) .|.+..+.+++|..+.+... .+ +...+|......+.++.|+|+...+ ..++.|.|.++.+... T Consensus 201 kg~~k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~ 280 (537) T protein:vir:10 201 PGAYKGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLINGKKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIMER 280 (537) T ss_pred ccceeEEEEechhhcccccchhhhccCCccccCCceeeeecCeEecceeEEEecCCCCchhhhcccCcccccHHHHHHHH Confidence 23456788888877765321 11 2222332333455667777776543 2346799999999999 Q ss_pred HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCC-CceeeecCcChhhH Q lcl|Aclame:pro 185 IGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQE-GMKFKPLSMTNVDA 263 (419) Q Consensus 185 i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~-g~~~~~l~~~~~d~ 263 (419) +.....+......++.+......-+..-..+ .+++.+. +.++...+..+|.| +++++. +.+|..++.+...+ T Consensus 281 l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l---~~~~~~~---~r~~~~~~~r~n~g-~~~id~e~e~~e~~~~~lsgl 353 (537) T protein:vir:10 281 VYAAERTANEGPMLAMTKRQTVLKVDAAQVL---ANKQQFD---ETMSWWTATRDNYQ-VRVVDKDNEDVVQIDTTLNDL 353 (537) T ss_pred HHHHHHHHHHHHHHHHhcCCceeeechHHhh---cCHHHHH---HHHHHHHhhcCCcc-eeEecCCCceeEEEeccCCCH Confidence 9999888888888887776554333222211 1233333 33333333333444 566665 68888877666654 Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHHH------HhhHHHHHHHHHHHhhccChhhhhhhhh Q lcl|Aclame:pro 264 ALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIY------TLLPWVKRHEQAKTRDLLLPSERKQYFI 336 (419) Q Consensus 264 ~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~~------~i~P~~~~i~~~l~~~ll~~~~~~~~~~ 336 (419) .+.+......||.+.|||..+| |..-.+..++.+...+.|+.. .|.|.+..+.+.+.+..+.+ ...+ T Consensus 354 --~~~l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~----~~~~ 427 (537) T protein:vir:10 354 --DKVIMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRK----RIRV 427 (537) T ss_pred --HHHHHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----Ccce Confidence 5677888889999999999865 433333445556666666644 37888888877777666554 2246 Q ss_pred hhhhhhhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCc-- Q lcl|Aclame:pro 337 EYNLAGLLRGDQSSRYAA-------YAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPT-- 407 (419) Q Consensus 337 ~fd~~~~~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~-- 407 (419) .|.++.|...|.++++++ +.+++.+|++++||+|+.|+.+|..|-+-+.-..+....+........++.+. T Consensus 428 ~i~f~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~~~ 507 (537) T protein:vir:10 428 KVEFPPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRIIE 507 (537) T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCCCCC Confidence 666778888888887765 88899999999999999998877544332211111111111000000000000 Q ss_pred -------cccccchhccc-----C Q lcl|Aclame:pro 408 -------KAALDEIGRIL-----S 419 (419) Q Consensus 408 -------~~~~~e~~~~~-----~ 419 (419) ..+.++.++-. | T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~ 531 (537) T protein:vir:10 508 DQPAPSEMFGATSSGESANDPRDS 531 (537) T ss_pred CCCCccccCCCCccccccCCCccC Confidence 00000000000 0 No 108 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.88 E-value=1.3e-22 Score=140.66 Aligned_cols=403 Identities=11% Similarity=0.029 Sum_probs=219.9 Q ss_pred CCccchhcccccccccccchHHHHhh----cC--------------CCcccccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALL----GS--------------ARSEAGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) +..-|-..-......+..+.....++ |. .....+..+ ...|.+++.++++|+.+|+++..- T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l-~a~Y~~~~l~r~~Vd~~aed~~r~ 111 (532) T protein:vir:94 33 LGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVEATSWPGFPT-LALLAQLPEYRTMHETPADECVRA 111 (532) T ss_pred hhhhhhhhhcccccccccccccccccccccccCcccccccccccccccccchHHH-HHHHHcCchhhhhhccchHHHhhC Confidence 11000000000000010000000000 00 000011111 123457999999999999999999 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec-------------------CCC Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD-------------------QDG 123 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~-------------------~~G 123 (419) .+.+....++... ......|...-.. ....+-+..++.+..++|.+++++.-. ..| T Consensus 112 ~~~i~~~~~~~~~----~~~~~~i~~~~~~-l~v~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~~~~I~~g 186 (532) T protein:vir:94 112 WGKITCSSKDELA----ADKATRITQKLEQ-YNVRTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLSPSFVQRG 186 (532) T ss_pred CceEeeCCccccc----hHHHHHHHHHHHh-hhHHHHHHHHHHhhhcccceEEEEEeccCCccccccccccccccccccc Confidence 9988654333221 1222222221111 133445556667778889998876432 234 Q ss_pred ceEEEEEecCceeEEEEcc--c------eeE-EEEeecccccccceEEEecCCCC-------CCcccccHHHHHHHHHHH Q lcl|Aclame:pro 124 VIQGLYPLDNEAVTVMKGP--D------LKP-MYRVAGADPLPQRLVHHVRWMSI-------NGYTGLSPVLLHANAIGH 187 (419) Q Consensus 124 ~~~~l~~~~~~~v~~~~~~--~------~~~-~~~~~~~~~~~~~~i~~~~~~~~-------~~~~G~s~~~~~~~~i~~ 187 (419) .+..+.+++|..|++.... + +.. .|...+...+.++.|+|+...+. .+++|.|.++.+...+.. T Consensus 187 ~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~~g~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~~l~~ 266 (532) T protein:vir:94 187 CLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIATSGKKIHSSRIHTVVGRPVGDMLKAAYSFRGVSISQLAMPYVDN 266 (532) T ss_pred eeeEEEeechheecccccccccccccccCCceeEEEccCeeeccceEEEecCCCchhhhccccccccccHHHHHHHHHHH Confidence 4578888898888764321 1 111 22233445567777778765432 345799999999999999 Q ss_pred HHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCC-CceeeecCcChhhHHHH Q lcl|Aclame:pro 188 AQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQE-GMKFKPLSMTNVDAALI 266 (419) Q Consensus 188 ~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~-g~~~~~l~~~~~d~~~~ 266 (419) ...+......+........ +++. ....++.+..+++.++++....+.+|. ++++++. ..+|+.++.+..++ . T Consensus 267 ~~~t~~~~~~l~~~~~~~v--~k~~--~a~~ls~~~~~~~~~r~~~~~~~~~n~-g~~~id~~~e~~e~~~~~lsgl--~ 339 (532) T protein:vir:94 267 WLRTRQSVSDTVKQFSMTN--LATD--MAQLLAPGGAQSLDARLQLFNLYRDNR-NIGALDKGTEEIQQTNTPLSGL--D 339 (532) T ss_pred HHHHHHHHHHHHHhcCCce--eeec--hHHhhcchhHHHHHHHHHHHHhhcCCc-cceEEcCCCceeEEEecccCCH--H Confidence 9888887777666544332 2332 122233344566666666444443343 4566664 57888887666654 5 Q ss_pred HHHHHHHHHHHHHhcCCHHHcccccC-cccccHHHHHHHHHH-------HHhhHHHHHHHHHHHhhccChhhhhhhhhhh Q lcl|Aclame:pro 267 DALRLSALDIARIYKIPAHMVNELER-ATFSNIEHQSLQFVI-------YTLLPWVKRHEQAKTRDLLLPSERKQYFIEY 338 (419) Q Consensus 267 e~~~~~~~~Ia~~fgvpp~~~g~~~~-~~~sn~e~~~~~~~~-------~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~f 338 (419) +.......+||++.|||..+|.+.+. +-.++.+.....|+. .-+.|.++.+.+.+.+..+.... ..+.| T Consensus 340 ~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~~~---~d~~~ 416 (532) T protein:vir:94 340 SLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQID---PGLAW 416 (532) T ss_pred HHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---CCceE Confidence 67788889999999999986544333 233455656666666 44778888887777766554322 12455 Q ss_pred hhhhhhhccHHHHHH-------HHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccc-c------------ccccc Q lcl|Aclame:pro 339 NLAGLLRGDQSSRYA-------AYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVD-A------------SKPQP 398 (419) Q Consensus 339 d~~~~~~~d~~~~~~-------~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~-~------------~~~~~ 398 (419) .++.|...+.+++++ .+.+++.+|++++||+|++++.+|..+.+.....-.... . +.+.. T Consensus 417 ~f~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (532) T protein:vir:94 417 EWSPLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAAALNPPAT 496 (532) T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhcccccCCCCC Confidence 555677777776655 457789999999999999999998765443221111000 0 00000 Q ss_pred ccCCCCCCccccccchhc-ccC Q lcl|Aclame:pro 399 IPMGKTEPTKAALDEIGR-ILS 419 (419) Q Consensus 399 ~~~~~~~~~~~~~~e~~~-~~~ 419 (419) .+..++...+...++.+. --+ T Consensus 497 ~~~~~~~~~~~~~d~~~~~~~~ 518 (532) T protein:vir:94 497 APQTPNPQPDSEDDQTDNQPDA 518 (532) T ss_pred CCCCCCCCCCCCCCCCCCccCC Confidence 001111111112222222 111 No 109 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.85 E-value=2.4e-21 Score=133.64 Aligned_cols=397 Identities=14% Similarity=0.029 Sum_probs=209.3 Q ss_pred CC-----------------------------------ccchhcccccccccccc---hHHHHhhcCCCcccccccCHHHH Q lcl|Aclame:pro 1 MF-----------------------------------FSRQLLSNLGQTQPGSG---GWVSALLGSARSEAGQVVTPASA 42 (419) Q Consensus 1 M~-----------------------------------f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 42 (419) |- +.....+.-........ ....+.+.... ..+..+ ...| T Consensus 66 ~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~Dgl~n~~~~lG~~~~~s~y~~~~~~~~~~~~~~-f~gyql-~alY 143 (862) T protein:vir:99 66 VEISDSVNAKSVSGKNFAMDSAVRSAIKAITGFAMDDGGGAPVPIGAEGKQSSYAVPEALQDWYLSQG-FIGHQA-CALI 143 (862) T ss_pred ccccccccchhhhhhhhcchhhcchhhhhhhhhhhhcchhhhhhccccccccccccchhccccccccC-cccHHH-HHHH Confidence 00 00000000000000000 00000000000 000111 2345 Q ss_pred hccHHHHHHHHHHHHhhccCCeeEeeecCCccee-eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec- Q lcl|Aclame:pro 43 LSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP-ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD- 120 (419) Q Consensus 43 ~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~-~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~- 120 (419) .+++.++++|+.+|+++.+-.+.+....++.... .....+...+. + ....+-+..++.+..++|.+++++.-. T Consensus 144 ~~~~larkiVd~pAeDatR~g~~I~~~~d~~e~~~e~~~~ie~~~~-r----L~v~~~l~eair~~RLyGga~ililv~~ 218 (862) T protein:vir:99 144 AQHWLVDKACSLAGEDAIRNGWHLKSLGEGEEIDEESLEKFKAIDV-E----FKVKENLIEFNRFKNVFGIRVAIFVVDS 218 (862) T ss_pred HhCchhhhhhhhhhHHHhhCCceEeecCcccccCHHHHHHHHHHHH-H----hhHHHHHHHHHHhcccccceEEEEEecC Confidence 6799999999999999999999987543221111 00112222221 1 123444555666667788877765421 Q ss_pred ---------------CCCceEEEEEecCceeEEEE----ccc------eeE-EEEeecccccccceEEEecCCC------ Q lcl|Aclame:pro 121 ---------------QDGVIQGLYPLDNEAVTVMK----GPD------LKP-MYRVAGADPLPQRLVHHVRWMS------ 168 (419) Q Consensus 121 ---------------~~G~~~~l~~~~~~~v~~~~----~~~------~~~-~~~~~~~~~~~~~~i~~~~~~~------ 168 (419) ..|.+..|.+++|.++.+.. ..+ +.. .|.+.+ ..+.++.|+++...+ T Consensus 219 ~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v~~~~~Dp~sp~yGkP~~y~I~g-~~IH~SRliif~g~~vpd~lk 297 (862) T protein:vir:99 219 EDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLTAESTADPSSQFFYEPEFWIISG-QKYHRSHLIIARGPQPADILK 297 (862) T ss_pred cCchhhhcCcCcccccccceeEEEEechhhhcccccccccccccccccCCceeeeecC-eeeccceeEEecCCCchhhhh Confidence 12445677788877766421 111 112 233333 345556666665543 Q ss_pred -CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec Q lcl|Aclame:pro 169 -INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL 247 (419) Q Consensus 169 -~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl 247 (419) ...+.|+|.++.+...+.....+......++.+.... +++++... .+.. .+.+.++++....+.+| .+++++ T Consensus 298 ~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll~ka~l~--v~ktd~l~--~l~~--ed~l~~r~~~~~~~rdN-~Gi~li 370 (862) T protein:vir:99 298 PTYIFGGIPLVQRIYERVYAAERTANEAPLLAMNKRTT--AIHTDTAK--AIAN--EDKFIQRLMFWVRYRDN-HAVKVL 370 (862) T ss_pred ccCCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccc--eeechhHh--hhcc--HHHHHHHHHHHHhccCc-ceeEEe Confidence 2345799999999999999999988888888876544 33443211 1111 12333344433333334 347888 Q ss_pred CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc-CcccccHHHHHHHHHH-------HHhhHHHHHHHH Q lcl|Aclame:pro 248 QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE-RATFSNIEHQSLQFVI-------YTLLPWVKRHEQ 319 (419) Q Consensus 248 ~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~-~~~~sn~e~~~~~~~~-------~~i~P~~~~i~~ 319 (419) +.+.+|..++.+..++ .+.......+||++.+||..+|.+.+ .+..++.++..+.||. .-|.|.+..+.. T Consensus 371 D~eEe~e~ls~slSGL--~dll~~~~q~IAaas~IP~tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~LerL~~ 448 (862) T protein:vir:99 371 GTDETMEQFDTSLADF--DAVIMGQYQLVASIAKTPATKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFLQRHYL 448 (862) T ss_pred cCCCceeEEecccCCh--HHHHHHHHHHHHhhhCCCceeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9888999888776654 45677778899999999998654433 5555666767777776 456788888876 Q ss_pred HHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHh------CCCCCCCccee-- Q lcl|Aclame:pro 320 AKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAA-------YAVGRQWGWLSINDIRRLE------NMPPVKGGDIY-- 384 (419) Q Consensus 320 ~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~l------Gl~p~~ggD~~-- 384 (419) -+..++-.+ ..+.|.++.|...+.++++++ +.+++.+|+++++|+|++| |++.++..|.- T Consensus 449 li~~~lg~~-----~d~~ieFnpL~~~sekEkAEi~kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d 523 (862) T protein:vir:99 449 ISRLSLGIQ-----HEIDVVMEPVASMTAQQQADLNKTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEET 523 (862) T ss_pred HHHHhcCCC-----CcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCccccccc Confidence 554443221 235555667888888877765 6788999999999999976 55554432211 Q ss_pred --eeccccccccccccccCCCCCCc----------c-----ccccchhcccC Q lcl|Aclame:pro 385 --LSPMNMVDASKPQPIPMGKTEPT----------K-----AALDEIGRILS 419 (419) Q Consensus 385 --~~~~n~~~~~~~~~~~~~~~~~~----------~-----~~~~e~~~~~~ 419 (419) ..+-+.......+......+.+. + .+..++++-.+ T Consensus 524 ~~~~~e~~~~~e~~g~a~~~ap~de~~aga~~~~~e~d~~~~p~~~~~~~g~ 575 (862) T protein:vir:99 524 PGASPENLAAYQKAGAAQETASAKETQAGAAVTTAEGDQPNVQMVPSMKPGQ 575 (862) T ss_pred CCCCcccccccccCCcccccccccccccccCCccccCCcccccccCCCCCCC Confidence 11222221111111100000000 0 00001111111 No 110 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.80 E-value=3.9e-20 Score=127.01 Aligned_cols=368 Identities=13% Similarity=0.063 Sum_probs=200.7 Q ss_pred ccccchHHHHhhcCCCccc----ccccCH----HHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHh Q lcl|Aclame:pro 15 QPGSGGWVSALLGSARSEA----GQVVTP----ASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSIL 86 (419) Q Consensus 15 ~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL 86 (419) ....+++...+.|+..... ....+. ..|..++.++++|+.+|+++.+-.|.+.... . ..+ +...| T Consensus 1 ~~~~D~~~n~~~gg~~~~~~~~~~~~~~~~~l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~~--~-~~~----~~~~~ 73 (422) T protein:vir:10 1 MVKTDSYANIFLGGSDGSEIYGSLQNQAPTILASLYADNALVRRIIDTIPETALAAGFHIDGID--D-EPA----FWSRW 73 (422) T ss_pred CccchhhHHHHcCCCCCccccCcccccCHHHHHHHHHhChhhHHHHhhhhHHHhcCCccccCCC--H-HHH----HHHHH Confidence 2222333333333221110 011111 2355789999999999999998888874221 1 111 22222 Q ss_pred hccccccCCHHHHHHHHHHHHHHcCCeeEEEee-c---------CCCceEEEEEecCceeEEEEcc-c------eeE-EE Q lcl|Aclame:pro 87 KYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR-D---------QDGVIQGLYPLDNEAVTVMKGP-D------LKP-MY 148 (419) Q Consensus 87 ~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~-~---------~~G~~~~l~~~~~~~v~~~~~~-~------~~~-~~ 148 (419) . + ....+-+..++.+..++|.|++++.- + ..|.+..+.++++..+++.... + +.. .| T Consensus 74 ~-~----l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~P~~y 148 (422) T protein:vir:10 74 D-D----LEMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFGEPLTY 148 (422) T ss_pred H-H----hhHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccCcceEE Confidence 1 1 12345566677778889999998864 2 2456778888888888764311 1 222 22 Q ss_pred Eeecc-----cccccceEEEecCC-------CCCCcccccHHHH-HHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCC Q lcl|Aclame:pro 149 RVAGA-----DPLPQRLVHHVRWM-------SINGYTGLSPVLL-HANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDA 215 (419) Q Consensus 149 ~~~~~-----~~~~~~~i~~~~~~-------~~~~~~G~s~~~~-~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~ 215 (419) .+.+. ..+.++.++|+... +.+.++|.|++.. +...+.....+......++.+.... +++++... T Consensus 149 ~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~--v~~~~~l~ 226 (422) T protein:vir:10 149 RITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQA--VWKAKGLA 226 (422) T ss_pred EEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cccchhHH Confidence 22221 34566667777543 3345689999975 6788888888888888877766533 33333211 Q ss_pred CchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc Q lcl|Aclame:pro 216 PALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF 295 (419) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~ 295 (419) ....+.......++++........+.+.+++..++.+|+.++.+..+ +.+.......+||++.|||..++.+.+.+.. T Consensus 227 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP~t~L~G~s~~Gl 304 (422) T protein:vir:10 227 ELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGG--IDAFLDKKFDRIVALSGIHEIILKNKNVGGV 304 (422) T ss_pred HhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCC--hHHHHHHHHHHHHhhhCCCeeeeccCCcccc Confidence 00001112222233333332332334456666677889988877775 4677888899999999999987654444333 Q ss_pred -ccHHHHHHHHHHH-------HhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHH-------HHHHHHHh Q lcl|Aclame:pro 296 -SNIEHQSLQFVIY-------TLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRY-------AAYAVGRQ 360 (419) Q Consensus 296 -sn~e~~~~~~~~~-------~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~-------~~~~~~~~ 360 (419) ++.++..+.|+.. -+.|.+..+-.. +... .+ +.|.++.+...+.++++ +.+.+++. T Consensus 305 natgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~~----i~~s---~~--~~~~f~pL~~~sekekaei~~~~a~a~~~~~~ 375 (422) T protein:vir:10 305 SSSQNTALETFHKLVDRKRNAELLPILEFLIPF----IVNA---EE--WSVEFNPLAQESSKDKAEILEKNVNSIAALIA 375 (422) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccc---CC--cEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHh Confidence 4566666676663 344554444322 1111 12 44445566666666544 45677899 Q ss_pred CCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCcccccc Q lcl|Aclame:pro 361 WGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALD 412 (419) Q Consensus 361 ~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 412 (419) +|+++++|+|+.|--..... .+..+..+.+. .........+.+.++| T Consensus 376 ~g~i~~~e~r~~L~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~d 422 (422) T protein:vir:10 376 AGAMDIDEARDTLRTIAPEV----KINDGSVETEV-TISETSNDPLEVPTDD 422 (422) T ss_pred cCCCCHHHHHHHhhhhcccc----cCCCCCCcccc-chhhcCCCCCCCCCCC Confidence 99999999999884332211 11111222111 1111111111111122 No 111 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.80 E-value=5.8e-19 Score=120.56 Aligned_cols=401 Identities=9% Similarity=-0.058 Sum_probs=236.9 Q ss_pred CC-ccchhccc---cccccccc--chHHHHhhcCCCccccc--------------cc-----CHHHHh-ccHHHHHHHHH Q lcl|Aclame:pro 1 MF-FSRQLLSN---LGQTQPGS--GGWVSALLGSARSEAGQ--------------VV-----TPASAL-SLTVLQNCVTL 54 (419) Q Consensus 1 M~-f~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~--------------~~-----~~~~~~-~~~~v~~~i~~ 54 (419) |. +.+..-+. ...+.+.+ -..+...+...++.... .+ ..+.+. +.+.|.+|+.. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~ 80 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 55 32222111 11111111 01122222211111100 00 011222 58899999999 Q ss_pred HHHhhccCCeeEeeecCCcce-eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-C--ceEEEEE Q lcl|Aclame:pro 55 LAESIAQLPVELYERSGDDRK-PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-G--VIQGLYP 130 (419) Q Consensus 55 ia~~ia~~~~~~~~~~~~~~~-~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G--~~~~l~~ 130 (419) +...|.+++|.|....++... ......+...|+..| .+.+++..+. +.+.+|.+..++++... | .+..+.+ T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~l-da~~~G~s~~Eivw~~~~g~~~~~~l~~ 155 (526) T protein:vir:99 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhccc----CHHHHHHHHH-HhhhhcceeEEEEEeecCCceeEEEeee Confidence 999999999999765443321 111223444454333 3566666665 57889999999986543 3 4778999 Q ss_pred ecCceeEEEEccceeEEEEeec---ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 131 LDNEAVTVMKGPDLKPMYRVAG---ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSG 207 (419) Q Consensus 131 ~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ 207 (419) .++.+++...+......+.... ....+..-|+|........++|.+.+..+.-....-....++...+.+.-|.|-. T Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (526) T protein:vir:99 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred ecccceeeccCCCcEEEecCCCCCceeecCCCeEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 9999888777666555443322 2223445778876666677899999999999999999999999999999999999 Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcC-hhhHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 VIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMT-NVDAALIDALRLSALDIARIYKIPAHM 286 (419) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 286 (419) +.+.+... ++++.+++.+.+.+.-. ++ .++++.|+++.-+..+ .....|.++.++..++|+.++ +--.+ T Consensus 236 igky~~~a----~~~ek~~L~~av~~i~~---d~--~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LGqtl 305 (526) T protein:vir:99 236 LGKYPPGT----ADEEKATLLRAVTGLGH---AA--AGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTL 305 (526) T ss_pred EEecCCCC----CHHHHHHHHHHHHHHhh---Cc--EEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhhh Confidence 99887543 56677778877766533 22 5666777666554432 223357888899999998875 22222 Q ss_pred ccc---ccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhh----------hhhhhhhhhhhhhccHHHHHH Q lcl|Aclame:pro 287 VNE---LERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERK----------QYFIEYNLAGLLRGDQSSRYA 353 (419) Q Consensus 287 ~g~---~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~----------~~~~~fd~~~~~~~d~~~~~~ 353 (419) ... ..+++++.. +.......+.+.-.+..++..+|+.|+.+.-.. ..++.|+ .....|.+..++ T Consensus 306 Ts~~~~g~~gS~a~g-~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~--~~e~eDl~~~a~ 382 (526) T protein:vir:99 306 TSTTSQSGGGAFALG-QVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQ 382 (526) T ss_pred ccccccCcchhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeC--CCCcccHHHHHH Confidence 221 122233332 333444666677788888888988876543211 1133444 345668889999 Q ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCcceeeeccccccccccccc-----cCCCCCCccccccchhcccC Q lcl|Aclame:pro 354 AYAVGRQWGW-LSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPI-----PMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 354 ~~~~~~~~g~-~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~-----~~~~~~~~~~~~~e~~~~~~ 419 (419) .+.+++..|+ ++..++|+++|+|.-..++.++.+..-.+....... ......+.....+..+..++ T Consensus 383 ~~~~L~~~G~~i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 454 (526) T protein:vir:99 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALA 454 (526) T ss_pred HHHHHHhCCCccCHHHHHHHhCCCCCCCcccccCCCCCCcccccccccccccccccccccCcchhhHHHHHH Confidence 9999999997 999999999999876656655543221111111000 00111111111222223232 No 112 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.79 E-value=3.4e-20 Score=127.31 Aligned_cols=368 Identities=12% Similarity=0.034 Sum_probs=203.6 Q ss_pred ccccccchHHHHhhcCCCcc---------cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHH Q lcl|Aclame:pro 13 QTQPGSGGWVSALLGSARSE---------AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLY 83 (419) Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~ 83 (419) .+.-..+++ .++++++... .+..+ ...|.+++.++++|+.+|+++.+-.|.+.....+ ..+. T Consensus 1 ~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~l-~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~-------~~~~ 71 (427) T protein:vir:10 1 MKIVKHDGY-NDIFNGGADGSPKPFFMSDASYHV-GSFYNDNATAKRIVDVIPEEMVTAGFKMSGVKDE-------KEFK 71 (427) T ss_pred CCccccchH-HHHhhcCCCCcccCccccCchHHH-HHHHHcCchhhhhhccchHHhhcCCccccCccHH-------HHHH Confidence 111112222 3333322111 11111 2335578999999999999999988887432111 1122 Q ss_pred HHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEee----------cCCCceEEEEEecCceeEEEEccc-------eeE Q lcl|Aclame:pro 84 SILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR----------DQDGVIQGLYPLDNEAVTVMKGPD-------LKP 146 (419) Q Consensus 84 ~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~----------~~~G~~~~l~~~~~~~v~~~~~~~-------~~~ 146 (419) ..+. + ..-.+-+..++.+..++|.+++++.- ...|.+..+.++++..+++..... +.+ T Consensus 72 ~~~~-~----l~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~P 146 (427) T protein:vir:10 72 SLWD-S----YKLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGEP 146 (427) T ss_pred HHHH-H----hhHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCccccccCcc Confidence 2221 1 12344566777778889999998742 235778899999988876643211 222 Q ss_pred -EEEeecc-----cccccceEEEecCCC-------CCCcccccHHH-HHHHHHHHHHHHHHHHHHHHHccCCCceEEEeC Q lcl|Aclame:pro 147 -MYRVAGA-----DPLPQRLVHHVRWMS-------INGYTGLSPVL-LHANAIGHAQAIQQYAGKSFMNGTALSGVIERP 212 (419) Q Consensus 147 -~~~~~~~-----~~~~~~~i~~~~~~~-------~~~~~G~s~~~-~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~ 212 (419) .|.+.+. ..+.++.++|+...+ .+.++|.|++. .+...+.....+......++.+.... +++++ T Consensus 147 ~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~--v~k~~ 224 (427) T protein:vir:10 147 EIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQA--VWKVK 224 (427) T ss_pred eEEEEecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccc--cccch Confidence 2223222 245666677765443 34578999985 57788888888888777777665433 23333 Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC Q lcl|Aclame:pro 213 TDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELER 292 (419) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~ 292 (419) +......+.......++.+........+.+.+++...+.+|+.++.+...+ .+.......+||++.+||..++.+.+. T Consensus 225 ~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsgl--~~~~~~~~~~iaaa~~IP~t~L~G~sp 302 (427) T protein:vir:10 225 GLAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISGV--PEFLSSKMDRIVSLSGIHEIIIKNKNV 302 (427) T ss_pred hHHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCCh--HHHHHHHHHHHHhhhCCCeeeeccCCc Confidence 211000011111122222332222222345567767778888888777654 567888889999999999987654443 Q ss_pred ccc-ccHHHHHHHHHHH-------HhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHH-------HHHHH Q lcl|Aclame:pro 293 ATF-SNIEHQSLQFVIY-------TLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRY-------AAYAV 357 (419) Q Consensus 293 ~~~-sn~e~~~~~~~~~-------~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~-------~~~~~ 357 (419) +.. ++.++..+.|+.. -+.|.+..+-+-+- .. .+ |.|.++.+...+.++++ +.+.+ T Consensus 303 ~Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~~i~----~s---~~--~~~~f~pL~~~s~kEkaei~~~~a~a~~~ 373 (427) T protein:vir:10 303 GGVSASQNTALETFYKLVDRKREEDYRPLLEFLLPFIV----DE---EE--WSIEFEPLSVPSKKEESEITKNNVESVTK 373 (427) T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cC---CC--cEEEeCCCCCCCHHHHHHHHHHHHHHHHH Confidence 333 4556666676663 35555544433221 11 12 44444466666666554 55677 Q ss_pred HHhCCCcCHHHHHHHh----CCCCCCCcceeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 358 GRQWGWLSINDIRRLE----NMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 358 ~~~~g~~T~NE~R~~l----Gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) ++.+|+++++|+|+.| +.+.+.+++. ...+.+......++...+...+|+ T Consensus 374 ~~~~gvi~~~e~r~~L~~~~~~~~~~~~~~-------~~~e~~~~~~e~~p~~~e~~~d~~ 427 (427) T protein:vir:10 374 AITEQIIDLEEARDTLRSIAPEFKLKDGNN-------INIREPEETTEPEPGLGEKLEDEN 427 (427) T ss_pred HHhcCCCCHHHHHHHHHhhhccccCCCCcc-------ccccccchhcCCCCCCCCCCCCCC Confidence 8999999999999877 3444433322 222222222223333334444455 No 113 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.79 E-value=3.3e-19 Score=121.91 Aligned_cols=397 Identities=12% Similarity=0.057 Sum_probs=207.6 Q ss_pred CC-cc---------chhccccccc-----ccc----cchHHHHhhcCCCccc---------------ccccCHHHHhccH Q lcl|Aclame:pro 1 MF-FS---------RQLLSNLGQT-----QPG----SGGWVSALLGSARSEA---------------GQVVTPASALSLT 46 (419) Q Consensus 1 M~-f~---------~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 46 (419) |+ +. ++.+.-..+. .+. ..+.+..+.++..+.. +..+ ...|.+++ T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql-~alY~~~~ 121 (765) T protein:vir:96 43 IRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQA-CAIISQHW 121 (765) T ss_pred HhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhHHHhhhcccCCccHHH-HHHHHhCc Confidence 22 11 1110000000 000 0001111111111100 0111 12356799 Q ss_pred HHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec------ Q lcl|Aclame:pro 47 VLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD------ 120 (419) Q Consensus 47 ~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~------ 120 (419) .++++|+.+|++...-.|.+.....+. .+.....|+..- ......+-+..++.+..++|.+|+++.-. T Consensus 122 l~rkiVd~pAeDa~R~g~~I~~~~~e~-----~~~~~~~l~~~~-~rl~v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~ 195 (765) T protein:vir:96 122 LVDKACSMSGEDAARNGWELKSDGRKL-----SDEQSALIARRD-MEFRVKDNLVELNRFKNVFGVRIALFVVESDDPDY 195 (765) T ss_pred hhhhhhhcchHHhhcCCceeecCcccc-----CHHHHHHHHHHH-HHhhHHHHHHHHHHHhhhceeeEEEEEecccCcch Confidence 999999999999999888875322111 112222222111 11233555666777788889998876421 Q ss_pred ----------CCCceEEEEEecCceeEEEE----ccc------ee-EEEEeecccccccceEEEecCCCC-------CCc Q lcl|Aclame:pro 121 ----------QDGVIQGLYPLDNEAVTVMK----GPD------LK-PMYRVAGADPLPQRLVHHVRWMSI-------NGY 172 (419) Q Consensus 121 ----------~~G~~~~l~~~~~~~v~~~~----~~~------~~-~~~~~~~~~~~~~~~i~~~~~~~~-------~~~ 172 (419) ..|.+..|..++|..+.+.. ..+ +. ..|.+.+. .+.++.|+|+...+. .++ T Consensus 196 l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~g~-~IH~SRli~~~g~~lpd~lk~~~~~ 274 (765) T protein:vir:96 196 YEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIISGK-KYHRSHLVVVRGPQPPDILKPTYIF 274 (765) T ss_pred hhccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeeecCc-eeccceEEEecCCCchhhhccccCc Confidence 12345566677766655421 111 11 22333333 455666777665442 346 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCce Q lcl|Aclame:pro 173 TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMK 252 (419) Q Consensus 173 ~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~ 252 (419) +|.|.++.++..+.....+......++.+..... ++++... ...+++ .+.+.++......+| .++++++.+.+ T Consensus 275 ~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v--~k~~~~~-~l~~~~---~l~~r~~~~~~~r~n-~g~~~id~ee~ 347 (765) T protein:vir:96 275 GGIPLTQRIYERVYAAERTANEAPLLAMSKRTST--IHVDVEK-AIANED---AFNARLAFWIANRDN-HGVKVIGIDET 347 (765) T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHhccce--eeechHh-hhccHH---HHHHHHHHHHHhcCC-ceeEEecCCcc Confidence 7999999999999999998888888888766543 3333211 111122 233333333333333 34788888899 Q ss_pred eeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc-CcccccHHHHHHHHHH-------HHhhHHHHHHHHHHHhh Q lcl|Aclame:pro 253 FKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE-RATFSNIEHQSLQFVI-------YTLLPWVKRHEQAKTRD 324 (419) Q Consensus 253 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~-~~~~sn~e~~~~~~~~-------~~i~P~~~~i~~~l~~~ 324 (419) |..++.+..++ .+.......+||++.+||..+|-+.+ .+..++.+...+.||. .-+.|.++.+-+-+-+. T Consensus 348 ~e~~s~~lsgl--~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s 425 (765) T protein:vir:96 348 MEQFDTNLSDF--DSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKS 425 (765) T ss_pred eeEEecccCCH--HHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 99888777654 56778888999999999987654433 4444566667777776 44566665554443322 Q ss_pred ccChhhhhhhhhhhhhhhhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHhCCCCC------CCcc----eeeec Q lcl|Aclame:pro 325 LLLPSERKQYFIEYNLAGLLRGDQSSRYAA-------YAVGRQWGWLSINDIRRLENMPPV------KGGD----IYLSP 387 (419) Q Consensus 325 ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~lGl~p~------~ggD----~~~~~ 387 (419) +.....+.|.++.|...+.++++++ +.+++.+|+++++|+|+.|+.++. +..+ ...-| T Consensus 426 -----~~i~~d~~i~FnpL~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~p 500 (765) T protein:vir:96 426 -----ESIDVQLEIVWNPVDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSP 500 (765) T ss_pred -----cCCCCcceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCc Confidence 1112235666667877787776665 777899999999999999866553 2111 11112 Q ss_pred cccccccccccccCCCCCCcccc----------------ccchhcccC Q lcl|Aclame:pro 388 MNMVDASKPQPIPMGKTEPTKAA----------------LDEIGRILS 419 (419) Q Consensus 388 ~n~~~~~~~~~~~~~~~~~~~~~----------------~~e~~~~~~ 419 (419) -+....+.++..+....++...+ ..+...-.+ T Consensus 501 e~~~~~~~~~~~~~~~~~e~~~~~a~p~~~eg~~~~~~~~p~~~~p~~ 548 (765) T protein:vir:96 501 ENLAELEKAGAQSAKAKGEAERAEAQAGAVEGAGDPVPAAPRGTKPLA 548 (765) T ss_pred cccccccCCCcccccccCccccccCCCCccCCCCcccccCCcccCCcc Confidence 12222221111110000000000 000000000 No 114 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.79 E-value=2.7e-19 Score=122.38 Aligned_cols=394 Identities=7% Similarity=-0.059 Sum_probs=229.0 Q ss_pred ccchhcccccccccccchHHHHhhcCCCccccccc----------CHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCC Q lcl|Aclame:pro 3 FSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVV----------TPASALSLTVLQNCVTLLAESIAQLPVELYERSGD 72 (419) Q Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~ 72 (419) ..|........+....++++..++++..... ..+ ..+..+..+.|.+|++.+...|.+++|.|....++ T Consensus 1 v~~~~l~~e~at~~~~~d~~~~~~~~l~~~~-~~il~~a~~g~~~~y~~l~~D~~i~s~l~~rk~av~~~~w~i~p~~~~ 79 (488) T protein:vir:99 1 MEKPALGREIATSGDGRDITRPFISGLQVPN-DSILQRRGGNDLRVYEEILSDAQVKTVWGQRQLAVVSREWKVEAGGDR 79 (488) T ss_pred CCccchhHHHHHHHhhhhhhccccCCCCCCC-hHHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHhcCCceEEcCCCC Confidence 2221111111111111222222222211111 111 12445678999999999999999999999754332 Q ss_pred cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-C--ceEEEEEecCceeEEEEccceeEEEE Q lcl|Aclame:pro 73 DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-G--VIQGLYPLDNEAVTVMKGPDLKPMYR 149 (419) Q Consensus 73 ~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G--~~~~l~~~~~~~v~~~~~~~~~~~~~ 149 (419) ......-..+..+|. + ..+.++++.+. +.+++|.+++++++... | .+..+.+.++.++....+....+... T Consensus 80 ~~~~~~ae~v~~~l~-~----~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d~~~~l~~~~~ 153 (488) T protein:vir:99 80 PIDQAAAEHLEQQLQ-R----VGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYDQDGGLRLLTP 153 (488) T ss_pred hHHHHHHHHHHHHHh-C----CCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecccceeecCCCceEEecc Confidence 211111123333443 2 35677887776 57889999999887543 3 36789999999888765544443322 Q ss_pred eec--ccccc-c-ceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH Q lcl|Aclame:pro 150 VAG--ADPLP-Q-RLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD 225 (419) Q Consensus 150 ~~~--~~~~~-~-~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~ 225 (419) ... ...++ + ..++|.........+|.|.+..+......-....++...+.+.-|.|-.+.+.+... .++++.+ T Consensus 154 ~~~~~g~~lp~~~~~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~---a~~~ek~ 230 (488) T protein:vir:99 154 NNMFEGEPCPAPYFWHFSTGADNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKT---ATPEDKA 230 (488) T ss_pred CCCCCccccccCceEEEEeecCCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCC---CCHHHHH Confidence 221 22232 2 456666555556689999999999999999999999999999999998888876322 2456667 Q ss_pred HHHHHHHHHhccccccCcceecCCCceeeecCcC-hhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHH Q lcl|Aclame:pro 226 RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMT-NVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ 304 (419) Q Consensus 226 ~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~ 304 (419) ++.+.+.+.-. + ..++++.|+++.-++.. .....|.++.++..++|+.++-= -.+.+..++++++.. +.... T Consensus 231 ~l~~av~~~~~---~--~~~viP~~~~ie~~ea~~~~~~~~~~li~~~d~~Isk~iLG-qtlts~~~~Gs~a~~-~vh~~ 303 (488) T protein:vir:99 231 KLLAALHAIQT---D--SAIIMPAGMQAELLEAGRSGTADYKTLHDTMDATIAKVGLG-QVASTQGTPGRLGND-DLQAD 303 (488) T ss_pred HHHHHHHHHhc---C--cEEEecCCceeEEeecCCCChHHHHHHHHHHHHHHHHHHhh-hhhcccccccchhhH-HHHHH Confidence 77776666532 2 24666666665554432 22235788889999999888521 223233233344433 34445 Q ss_pred HHHHHhhHHHHHHHHHHHhhccChhhh----h--hhhhhhhhhhhhhccHHHHHHHHHHHHhC-CC-cCHHHHHHHhCCC Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLLPSER----K--QYFIEYNLAGLLRGDQSSRYAAYAVGRQW-GW-LSINDIRRLENMP 376 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~~~~~----~--~~~~~fd~~~~~~~d~~~~~~~~~~~~~~-g~-~T~NE~R~~lGl~ 376 (419) ...+.+.-.+..|++.+|+.|+.+.-. . ..++.|+. ....|.++.++.+.++++. |. ++..++|+.+|+| T Consensus 304 v~~d~~~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~~--~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip 381 (488) T protein:vir:99 304 VRLDLVKADADLICESFNLGPARWLTEWNFPGAQPPRVYRVI--EEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVE 381 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEecC--CCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCC Confidence 567778888999999999887664321 1 11334443 3556888999999999986 64 8888999999999 Q ss_pred CCCCcceeeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 377 PVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 377 p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) +-..++....|.......... ...++.....++-.+-++ T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 420 (488) T protein:vir:99 382 VESTQAEATAPTPSTEFAEGD----QPSDPAAAMAPQLAEAMQ 420 (488) T ss_pred CcccccccccCCCcccCCCCC----CCCCchHHHHHHHHHHHH Confidence 866555443332111110000 000000000011111001 No 115 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.79 E-value=6.1e-20 Score=125.93 Aligned_cols=375 Identities=11% Similarity=0.026 Sum_probs=199.4 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcc------cccccCH----HHHhccHHHHHHHHHHHHhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSE------AGQVVTP----ASALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~----~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~ 70 (419) ||+|=..+.+. ....+++ .+.|+..... ....++. ..|..++.++++|+.+|++..+-.|.+.... T Consensus 1 ~~~~m~~~~~~---~~~~D~~-~~~~~~~~g~~~~~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~ 76 (435) T protein:vir:79 1 MGVFMSDKVKA---ITKEDGY-NEIFGSKDGTFRPNAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPGFKVDGVK 76 (435) T ss_pred CCccccccccc---chhhcch-hhhhcccccccccCcccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCCceecCCC Confidence 99653222211 1112222 2322211110 1111222 2345789999999999999999888864221 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEee-c---------CCCceEEEEEecCceeEEEE Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR-D---------QDGVIQGLYPLDNEAVTVMK 140 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~-~---------~~G~~~~l~~~~~~~v~~~~ 140 (419) +. ..+...+. + ....+-+..++.+..++|.|++++.- + ..|.+..+.++++..+++.. T Consensus 77 -~~------~~~~~~~~-~----l~~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~ 144 (435) T protein:vir:79 77 -NE------KSFKSRWD-E----LRLNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHE 144 (435) T ss_pred -hH------HHHHHHHH-H----hhHHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchh Confidence 11 11222222 1 12334566667777888998888763 2 23456688888887776533 Q ss_pred cc-c------eeE-EEEeec-----ccccccceEEEecCC-------CCCCcccccHH-HHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 141 GP-D------LKP-MYRVAG-----ADPLPQRLVHHVRWM-------SINGYTGLSPV-LLHANAIGHAQAIQQYAGKSF 199 (419) Q Consensus 141 ~~-~------~~~-~~~~~~-----~~~~~~~~i~~~~~~-------~~~~~~G~s~~-~~~~~~i~~~~~~~~~~~~~~ 199 (419) .. + +.+ .|.+.+ ...+.++.|+|+... +.+.++|.|++ +.+...+.....+......++ T Consensus 145 ~~~dp~sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~ 224 (435) T protein:vir:79 145 RETNARSVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLL 224 (435) T ss_pred hccCCcccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHH Confidence 21 1 122 222221 234666677777543 23457899997 578898998888888888877 Q ss_pred HccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 200 MNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARI 279 (419) Q Consensus 200 ~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 279 (419) .+..... +++++......+......+.+.+.......++.+.+++..++.+|..++.+..+ +.+.......+||++ T Consensus 225 ~~~~~~v--~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaaa 300 (435) T protein:vir:79 225 RRKQQAV--WKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSG--VPEFLQEKIDRIVAL 300 (435) T ss_pred HHhcCcc--ccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCC--HHHHHHHHHHHHHhh Confidence 6554332 333221100001111222222232222222233456666666788888877665 467788889999999 Q ss_pred hcCCHHHcccccCcc-cccHHHHHHHHHHHH-------hhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHH Q lcl|Aclame:pro 280 YKIPAHMVNELERAT-FSNIEHQSLQFVIYT-------LLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSR 351 (419) Q Consensus 280 fgvpp~~~g~~~~~~-~sn~e~~~~~~~~~~-------i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~ 351 (419) .|||..++.+...+. .++.++....|+..+ +.|.+..+-.- +... . .+.|.++.+...+.+++ T Consensus 301 ~~IP~t~L~G~s~~glnstgd~d~~~yyd~i~~~Qe~~l~p~l~~l~~l----i~~s---~--d~~~~f~pL~~~sekEk 371 (435) T protein:vir:79 301 TGIHEIIIKNKNTGGVSASQNTALETFYKLIDRKRVEDYKPILEFLLPF----MISE---T--EWSIEFEPLSVPSDKDK 371 (435) T ss_pred hCCCeeeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcC---C--CCeEEeCCCCCCCHHHH Confidence 999997764444333 355566666666642 44444433222 1111 1 24445556777777555 Q ss_pred H-------HHHHHHHhCCCcCHHHHHHHh-CCCCC---CCcceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 352 Y-------AAYAVGRQWGWLSINDIRRLE-NMPPV---KGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 352 ~-------~~~~~~~~~g~~T~NE~R~~l-Gl~p~---~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) + +.+.+++.+|+++++|+|+.| ...+. .+.+.. .++++.+. ...+..++.++| T Consensus 372 Aei~~~~a~a~~~~~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~-------~~~~~~d~--~~~~~~e~g~~~ 435 (435) T protein:vir:79 372 AEIMAKNVESVVKLKAEQAINLKETRDTLRSICPDLKIMDNDNI-------ELPEPEDL--DPEPGQEGGLNK 435 (435) T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccccCCCCcccc-------cCCccccC--CCCCCCCCCCCC Confidence 4 456667899999999999987 32222 111111 11111111 111122222223 No 116 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.77 E-value=3.1e-18 Score=116.59 Aligned_cols=401 Identities=9% Similarity=-0.050 Sum_probs=237.0 Q ss_pred CC-ccchhcccc---ccccccc--chHHHHhhcCCCccccc--------------cc-----CHHHHh-ccHHHHHHHHH Q lcl|Aclame:pro 1 MF-FSRQLLSNL---GQTQPGS--GGWVSALLGSARSEAGQ--------------VV-----TPASAL-SLTVLQNCVTL 54 (419) Q Consensus 1 M~-f~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~--------------~~-----~~~~~~-~~~~v~~~i~~ 54 (419) |. +....-+.. ..+.+.+ -..+...+...++.... .+ ..+... +.+.|.+|+.. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l~~ 80 (526) T protein:vir:79 1 MAQIVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 54 222211111 1111111 01111222211111000 00 012223 58899999999 Q ss_pred HHHhhccCCeeEeeecCCccee-eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-C--ceEEEEE Q lcl|Aclame:pro 55 LAESIAQLPVELYERSGDDRKP-ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-G--VIQGLYP 130 (419) Q Consensus 55 ia~~ia~~~~~~~~~~~~~~~~-~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G--~~~~l~~ 130 (419) +-..|.+++|.|....++.... ..-..+...|...| ++.+++..+.. .+.+|.++.++++... | .+..+.+ T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~----~~~~~i~~~ld-A~~~G~s~~Ei~w~~~~g~~~~~~l~~ 155 (526) T protein:vir:79 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLE----GLEDLLLDALD-GIGHGYSCIELEWALQGREWMPLAFHH 155 (526) T ss_pred HHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhccc----CHHHHHHHHHh-hhhhcceeEEEEEeecCCceeEEEeee Confidence 9999999999997654433221 11223444454333 35566665555 6789999999986554 3 4778999 Q ss_pred ecCceeEEEEccceeEEEEeec---ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 131 LDNEAVTVMKGPDLKPMYRVAG---ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSG 207 (419) Q Consensus 131 ~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ 207 (419) .++.+++...+........... ....+..-|+|........++|.+.+..+.-....-....++...+.+.-|.|-. T Consensus 156 r~~~~F~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~~ 235 (526) T protein:vir:79 156 RPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred ecccceEeccCCCcEEEecCCCCCceeecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 9999888776666555443322 2223445677776556667899999999999999999999999999999999999 Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcC-hhhHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 VIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMT-NVDAALIDALRLSALDIARIYKIPAHM 286 (419) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 286 (419) +.+.+... ++++.+++.+.+.+.-. + ..++++.|+++.-+..+ .....|.++.++..++|+.+. +--.+ T Consensus 236 igky~~~a----~~~ek~~L~~av~~i~~---d--a~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~i-LGqtl 305 (526) T protein:vir:79 236 LGKYPPGT----ADEEKATLLRAVTGLGH---A--AAGIIPETMAIDFQQAAQGSSEPFLAMMRQSEDAISKAV-LGGTL 305 (526) T ss_pred EEecCCCC----CHHHHHHHHHHHHHHhc---C--cEEEecCCceeEEeecCCCCHHHHHHHHHHHHHHHHHHH-hhhhh Confidence 99887543 45677777777776633 2 25666777666555432 233457888899999998875 22222 Q ss_pred ccc---ccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhh----------hhhhhhhhhhhhhccHHHHHH Q lcl|Aclame:pro 287 VNE---LERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERK----------QYFIEYNLAGLLRGDQSSRYA 353 (419) Q Consensus 287 ~g~---~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~----------~~~~~fd~~~~~~~d~~~~~~ 353 (419) ... ..+++++.. +.......+.+.-.+..++..+|+.|+.+.-.. ..++.|+ .....|.+..++ T Consensus 306 Ts~~~~g~~gS~a~g-~vh~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~--~~e~eDl~~~a~ 382 (526) T protein:vir:79 306 TSTTSQSGGGAFALG-QVHNEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFD--LREQADITSMAQ 382 (526) T ss_pred ccccccCcchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeC--CCCcccHHHHHH Confidence 221 122333332 334445666777788999999998887543211 1133444 345678899999 Q ss_pred HHHHHHhCCC-cCHHHHHHHhCCCCCCCcceeeecccccccccccc--cc---CCCCCCccccccchhcccC Q lcl|Aclame:pro 354 AYAVGRQWGW-LSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQP--IP---MGKTEPTKAALDEIGRILS 419 (419) Q Consensus 354 ~~~~~~~~g~-~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~--~~---~~~~~~~~~~~~e~~~~~~ 419 (419) .+.+++..|+ ++..++|+.+|+|....++.+..|..-........ .. ....++.....++.+++++ T Consensus 383 ~~~~L~~~G~~i~~~~i~e~~gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~ 454 (526) T protein:vir:79 383 SIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALA 454 (526) T ss_pred HHHHHHhCCCcCCHHHHHHHhCCCCCCCchhhccccCCccccccccccccccccccccccCchhhHHHHHHH Confidence 9999999987 89999999999976555555544432111111000 00 0011111222233333333 No 117 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.77 E-value=5.5e-18 Score=115.21 Aligned_cols=403 Identities=9% Similarity=-0.030 Sum_probs=233.6 Q ss_pred CC-ccchhcccc---ccccccc--chHHHHhhcCCCcccccc--------------c-----CHHHHh-ccHHHHHHHHH Q lcl|Aclame:pro 1 MF-FSRQLLSNL---GQTQPGS--GGWVSALLGSARSEAGQV--------------V-----TPASAL-SLTVLQNCVTL 54 (419) Q Consensus 1 M~-f~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~--------------~-----~~~~~~-~~~~v~~~i~~ 54 (419) |. +.+...+.. ....+.+ -..+...+...++....+ + ..+.+. +.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l~~ 80 (528) T protein:vir:10 1 MAAIVDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEMSK 80 (528) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 65 333322221 1111111 112222222222111000 0 011122 58889999999 Q ss_pred HHHhhccCCeeEeeecCCccee-eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC---CceEEEEE Q lcl|Aclame:pro 55 LAESIAQLPVELYERSGDDRKP-ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD---GVIQGLYP 130 (419) Q Consensus 55 ia~~ia~~~~~~~~~~~~~~~~-~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~---G~~~~l~~ 130 (419) +...|.+++|.|....++.... ..-.-+...|...| .+.+++..+ .+.+++|.+++++++... ..+..+.+ T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~----~f~~~i~~~-lda~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (528) T protein:vir:10 81 RKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLE----GIEDLMLDC-MDGVGHGYSAIELDWSLQGREWLPQAFDH 155 (528) T ss_pred HHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCc----cHHHHHHHH-HhhhhhcceeEEEEEeecCCceeEEEeee Confidence 9999999999997654432211 11123334443322 244444433 446779999999876543 34678999 Q ss_pred ecCceeEEEEccceeEEEEee---cccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 131 LDNEAVTVMKGPDLKPMYRVA---GADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSG 207 (419) Q Consensus 131 ~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ 207 (419) +++.++++..+.......... +....+..-|+|.........+|.+.+..+.-....-....++...+.+.-|.|-. T Consensus 156 r~~~~f~~~~~~~~~l~~~~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (528) T protein:vir:10 156 RPQSWFQLNPDDQDELRLRDNSIAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPIR 235 (528) T ss_pred ecccceeeccCCCcEEeccCCCCCceeecCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCeE Confidence 999988876655544433221 12223445677776555566789999999999999999999999999999999999 Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcC-hhhHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 VIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMT-NVDAALIDALRLSALDIARIYKIPAHM 286 (419) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 286 (419) +.+.+... ++++.+++.+.+.+.-.. + .++++.|+++.-+..+ ..-..|.++.++..++|+.++- --.+ T Consensus 236 igky~~~a----~~~ek~~L~~al~~i~~~---~--~~iiP~~~~ie~~ea~~~~~~~f~~li~~~d~~Isk~iL-Gqtl 305 (528) T protein:vir:10 236 LGKYPPGT----PDEEKVTLLRAVTGLGHA---A--AGIIPESMSIDFQEASKGSAEPFMAMMRWCDDSMSKAIL-GGTL 305 (528) T ss_pred EEecCCCC----CHHHHHHHHHHHHHHhhC---c--EEEecCCceeEEeecCCCChhHHHHHHHHHHHHHHHHHh-hhhh Confidence 99887543 566777888777665332 2 4566666665554432 2233578888999999988762 2233 Q ss_pred ccc---ccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhh--------hhhhhhhhhhhhhccHHHHHHHH Q lcl|Aclame:pro 287 VNE---LERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERK--------QYFIEYNLAGLLRGDQSSRYAAY 355 (419) Q Consensus 287 ~g~---~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~--------~~~~~fd~~~~~~~d~~~~~~~~ 355 (419) ... ..+++++- .+.......+.+.-.+..++..+|+.|+.+.-.. ..+..|.++.....|.+..++.+ T Consensus 306 Ts~~~~g~~gS~Al-g~vh~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~ 384 (528) T protein:vir:10 306 TSQTSESGGGAYAL-GQVHNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRADLAAMATSL 384 (528) T ss_pred hccccccccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcccHHHHHHHH Confidence 221 11223322 2233445667777788888888888876543211 11122333334566888899999 Q ss_pred HHHHhCCC-cCHHHHHHHhCCCCCCCcceeeecccccccccccccc----CC---CCCCccccccchhcccC Q lcl|Aclame:pro 356 AVGRQWGW-LSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIP----MG---KTEPTKAALDEIGRILS 419 (419) Q Consensus 356 ~~~~~~g~-~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~----~~---~~~~~~~~~~e~~~~~~ 419 (419) .+++..|+ ++..++|+.+|+|.-..++.+..+....+........ .. ..++.....++.+.+++ T Consensus 385 ~~L~~~G~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 456 (528) T protein:vir:10 385 PPLVKLGVQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQEALDQVLA 456 (528) T ss_pred HHHHhCCCCCCHHHHHHHhCCCCCCCCcccccCCCcccccccCcccccccccccccccccccccchHHHHHH Confidence 99999997 9999999999998766666655443322221111110 00 11111111122223333 No 118 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.76 E-value=2.9e-17 Score=111.23 Aligned_cols=400 Identities=13% Similarity=0.019 Sum_probs=232.3 Q ss_pred CCccchhcccccccccc-cchHH--------HHhhc---CCC-ccccccc-CHHHHh-ccHHHHHHHHHHHHhhccCCee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPG-SGGWV--------SALLG---SAR-SEAGQVV-TPASAL-SLTVLQNCVTLLAESIAQLPVE 65 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~-~~~~~--------~~~~~---~~~-~~~~~~~-~~~~~~-~~~~v~~~i~~ia~~ia~~~~~ 65 (419) |- ....+..|. ..+.+ ..++. ..+ ...+..+ ..+.++ +.+.|.+|++.+...|.+++|. T Consensus 1 ~~------~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~ly~~m~e~D~~i~s~l~~rk~av~~~~w~ 74 (469) T protein:vir:10 1 MT------ERVKTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAVYSRMDNEDSRVTSLLEAISLPIRSTPWR 74 (469) T ss_pred CC------CcccCCCCccchhhhhhcccccchhhccccccccccccccchHHHHHHHhhChHHHHHHHHHHHHHhcCCce Confidence 22 000011110 00000 00100 000 0000111 123444 5899999999999999999999 Q ss_pred EeeecCCcceeeccchHHHHhhccc------------cccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-----C--ceE Q lcl|Aclame:pro 66 LYERSGDDRKPATDHPLYSILKYEP------------NPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-----G--VIQ 126 (419) Q Consensus 66 ~~~~~~~~~~~~~~~~~~~lL~~~p------------n~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-----G--~~~ 126 (419) |.....+... ...+...|.... +-..+|.+++..++.+.+.+|.++.++++... | .+. T Consensus 75 v~p~~~~~e~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~ 151 (469) T protein:vir:10 75 IRANGASDEV---TEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLR 151 (469) T ss_pred EecCCCCHHH---HHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeee Confidence 9754433221 112222222111 12347888888888888889999999987533 3 266 Q ss_pred EEEEecCceeE-EEEccceeEEEEee----------------ccccc-ccceEEEecCCCCCCcccccHHHHHHHHHHHH Q lcl|Aclame:pro 127 GLYPLDNEAVT-VMKGPDLKPMYRVA----------------GADPL-PQRLVHHVRWMSINGYTGLSPVLLHANAIGHA 188 (419) Q Consensus 127 ~l~~~~~~~v~-~~~~~~~~~~~~~~----------------~~~~~-~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~ 188 (419) .+.+.++.++. ...+.++....... +...+ +..-|+|.........+|.|.+..+.-....- T Consensus 152 ~l~~rp~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK 231 (469) T protein:vir:10 152 KLAPRPQWTISKFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYKHWLLK 231 (469) T ss_pred eeeecCcccceeeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHHHHHHHH Confidence 77777776552 23333322221110 11122 33456777655566689999999999999999 Q ss_pred HHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHH Q lcl|Aclame:pro 189 QAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDA 268 (419) Q Consensus 189 ~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~ 268 (419) ....++...+.+.-|.|--+.+.+... ++++.+.+.+.+.+...|. ++ .++++.|+++.-++.+.....|.++ T Consensus 232 ~~~~~~w~~f~EryG~P~~vgky~~~a----~~~ek~~l~~a~~~~~~g~-~a--~~iip~~~~ie~~ea~g~~~~~~~l 304 (469) T protein:vir:10 232 DKLLRIEAATAERNGMGIPVGTASSAT----DEDEVRKMAALARSVRGGI-NA--GVGLAQGQILELLGVSGNLPDIRRA 304 (469) T ss_pred HHHHHHHHHHHHHcCCcceEEecCCCC----CHHHHHHHHHHHHHHhcCC-ce--EEEccCCceEEEeecCCCchHHHHH Confidence 999999999999999999888887543 4566777777777665443 22 4667888888877766666678999 Q ss_pred HHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh----hh-hhhhhhhhhhh Q lcl|Aclame:pro 269 LRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE----RK-QYFIEYNLAGL 343 (419) Q Consensus 269 ~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~----~~-~~~~~fd~~~~ 343 (419) .++-.++|+.++-=. .+.....+++++. .+.......+.+.-.+..++..+|+.|+.+.- +. .....|.++.. T Consensus 305 i~~~d~~Isk~iLG~-tlTs~~~gGS~a~-~~vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~P~~~~~~~ 382 (469) T protein:vir:10 305 IEGHDRSIALSGLAH-FLNLDGKGGSYAL-ASVLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPAPVLTFDPI 382 (469) T ss_pred HHHHHHHHHHHHhcc-cccccCccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecCC Confidence 999999998887432 2222222334433 44455567777888889999999988776432 11 12223333333 Q ss_pred hhccHHHHHHHHHHHHhCCC-----cCHHHHHHHhCCCCCCCcceeeecc--ccccccccccccC----CCCCCcccccc Q lcl|Aclame:pro 344 LRGDQSSRYAAYAVGRQWGW-----LSINDIRRLENMPPVKGGDIYLSPM--NMVDASKPQPIPM----GKTEPTKAALD 412 (419) Q Consensus 344 ~~~d~~~~~~~~~~~~~~g~-----~T~NE~R~~lGl~p~~ggD~~~~~~--n~~~~~~~~~~~~----~~~~~~~~~~~ 412 (419) . .+.+..++.+.+++..|. ++.+.+|+.+|+|+.+.++....+. +..+.....+... ..+.....+.. T Consensus 383 e-~~~~~~a~~i~~l~~~G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (469) T protein:vir:10 383 G-SRQDLTAAAVKLLYDAGVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAVPNQSAAPARTRSSGNADARARAPKA 461 (469) T ss_pred C-CcHHHHHHHHHHHHhcCCccCccccHHHHHHHhCCCCCCCCcccccchhcccCCCCCccccccCCCCCcccccccCCC Confidence 2 456778899999999998 4567889999999776555443221 1111111111000 00001111222 Q ss_pred chhcccC Q lcl|Aclame:pro 413 EIGRILS 419 (419) Q Consensus 413 e~~~~~~ 419 (419) +-+.|.= T Consensus 462 ~~~~l~d 468 (469) T protein:vir:10 462 DQGVLFD 468 (469) T ss_pred hHHhhcc Confidence 2222222 No 119 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=99.76 E-value=1.2e-17 Score=113.43 Aligned_cols=400 Identities=13% Similarity=-0.036 Sum_probs=231.8 Q ss_pred CC-ccchhccc---ccccccccc--hHHHHhhcCCCccc---------------cc-----ccCHHHHhccHHHHHHHHH Q lcl|Aclame:pro 1 MF-FSRQLLSN---LGQTQPGSG--GWVSALLGSARSEA---------------GQ-----VVTPASALSLTVLQNCVTL 54 (419) Q Consensus 1 M~-f~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~---------------~~-----~~~~~~~~~~~~v~~~i~~ 54 (419) |. +.+..-+. .....+.+. .++...+...++.. +. .+-.+...+.+-|.+|+.. T Consensus 1 m~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l~~ 80 (512) T protein:vir:19 1 MGRILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSELSK 80 (512) T ss_pred CcceeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 55 32221111 111111100 01111111111000 00 0011222368899999999 Q ss_pred HHHhhccCCeeEeeecCCcc-eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec---CCCceEEEEE Q lcl|Aclame:pro 55 LAESIAQLPVELYERSGDDR-KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD---QDGVIQGLYP 130 (419) Q Consensus 55 ia~~ia~~~~~~~~~~~~~~-~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~---~~G~~~~l~~ 130 (419) +-..|.+++|.|....++.. ....-+-+...|...| .+.+++..+. +.+.+|.+.+++++. ....+..+.+ T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~----~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g~~~~~~~~~ 155 (512) T protein:vir:19 81 RRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAA----WFEDALFDAG-DAILKGYSMQEIEWGWLGKMRVPVALHH 155 (512) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCC----CHHHHHHHHH-hhhhhcceeeeeEeeeeCCceeeeeeee Confidence 99999999999975433221 1111123344454333 3556666665 478899999998764 3345788999 Q ss_pred ecCceeEEEEccceeEEEEeec---ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCce Q lcl|Aclame:pro 131 LDNEAVTVMKGPDLKPMYRVAG---ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSG 207 (419) Q Consensus 131 ~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ 207 (419) +++.+++...+........... ....+..-|+|........++|.+.+..+.-....-....++...+.+.-|.|-. T Consensus 156 r~~~~f~~~~~~~~~lr~~~~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (512) T protein:vir:19 156 RDPALFCANPDNLNELRLRDASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPMR 235 (512) T ss_pred eccccceeccCCCcEEEecCCCCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCee Confidence 9999888776666555444322 2223445677776666677899999999999999999999999999999999988 Q ss_pred EEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCc-ChhhHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 VIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSM-TNVDAALIDALRLSALDIARIYKIPAHM 286 (419) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 286 (419) +.+.+... ++++.+++.+.+.+.-. + ..++++.|+++.-+.. +.....|.++.++-.++|+.+.-- -.+ T Consensus 236 igky~~~a----~~~ek~~L~~al~~~~~---~--a~~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~iLG-qtl 305 (512) T protein:vir:19 236 VGKYPTGS----TNREKATLMQAVMDIGR---R--AGGIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAILG-GTL 305 (512) T ss_pred EEecCCCC----CHHHHHHHHHHHHHHhh---C--cEEEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHHhh-hhh Confidence 88887543 45667777777776532 2 2566677776655443 223345788899999999987321 111 Q ss_pred ccc-ccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhhh----------hhhhhhhhhhhhhccHHHHHHHH Q lcl|Aclame:pro 287 VNE-LERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERK----------QYFIEYNLAGLLRGDQSSRYAAY 355 (419) Q Consensus 287 ~g~-~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~----------~~~~~fd~~~~~~~d~~~~~~~~ 355 (419) ... ..+++++. .+.......+.+.-.+..++..+|+.|+.+.-.. ..++.|+.. ...|.+..++.+ T Consensus 306 Ts~~g~~Gs~a~-~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~~~--e~eDl~~~a~~~ 382 (512) T protein:vir:19 306 TTEAGDKGARSL-GEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFDTS--EAGDITALSDAI 382 (512) T ss_pred cccccccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCC--ChhhHHHHHHHH Confidence 111 12223332 3445556777788889999999999887653211 113444433 456778888888 Q ss_pred HHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 356 AVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 356 ~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) .++...--++..++|+.+|+|....++....+....+........ ..........++.+++.. T Consensus 383 ~~l~~G~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~ 445 (512) T protein:vir:19 383 PKLAAGMRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNGSQKEA-ALSAEDIPQEDDIDRMGV 445 (512) T ss_pred HHHhcCCCCCHHHHHHHhCCCCCCCccccccCCCccccccccccc-cccccCCCchhhHhHHhh Confidence 777644458999999999997655444443322111111111100 000111111222333221 No 120 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.73 E-value=4.1e-18 Score=115.91 Aligned_cols=384 Identities=10% Similarity=0.045 Sum_probs=204.5 Q ss_pred CCccchhccccccccccc-chHHHHhhcCCCc--------ccccccCH----HHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS-GGWVSALLGSARS--------EAGQVVTP----ASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~----~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) |.=.+..+..+....... ..+...+..+... .....++. ..|..++.+.++|+.+|..+.+-++.+. T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g~~i~ 80 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLYASNSIAMNIVDIISEDMVRAGWSLK 80 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHHHhCCccchhhccchHHhhcCCeeee Confidence 663222222221111110 0111111111100 01111222 2345688889999999999998888764 Q ss_pred eecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-------------Cc---eEEEEEe Q lcl|Aclame:pro 68 ERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-------------GV---IQGLYPL 131 (419) Q Consensus 68 ~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-------------G~---~~~l~~~ 131 (419) .. ++.. ...+...+. + ....+-+..++.+..++|.+|+++.-... +. +..|.|+ T Consensus 81 ~~-~~~~----~~~~~~~~~-~----l~~~~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~ 150 (461) T protein:vir:80 81 TD-NKEM----KKNIESKWR-K----LKTKDRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTF 150 (461) T ss_pred cC-CHHH----HHHHHHHHH-H----hhHHHHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEec Confidence 22 1111 111222222 1 12344566677778899999998853211 11 1222232 Q ss_pred cCceeEEE-Ecc------ceeEE-EEeec----------------ccccccceEEEecCCCC-CCcccccHHHHHHHHHH Q lcl|Aclame:pro 132 DNEAVTVM-KGP------DLKPM-YRVAG----------------ADPLPQRLVHHVRWMSI-NGYTGLSPVLLHANAIG 186 (419) Q Consensus 132 ~~~~v~~~-~~~------~~~~~-~~~~~----------------~~~~~~~~i~~~~~~~~-~~~~G~s~~~~~~~~i~ 186 (419) .+..+... ... .+... |.+.+ ...+.+..|+|+.+.+. +..+|.|.++.+...+. T Consensus 151 ~~~~i~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~ 230 (461) T protein:vir:80 151 NTQKVTQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIIT 230 (461) T ss_pred cccccchhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHHHHH Confidence 22222211 111 11221 22211 13466777888876654 55789999999999999 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHH Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALI 266 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~ 266 (419) ....+......+..+.... +++++.. .....+....+.+.++.. .+ ..++++++.+.++..++.+..++ . T Consensus 231 ~~~~~~~~~~~l~~~~~~~--v~k~~~l--~~~~~~~~~~~~~~~~~~-~~---~~g~~~~d~~e~~e~~~~~lsgl--~ 300 (461) T protein:vir:80 231 VMDTSLWSVGQILYDFAFK--VYKTDDI--DALNKDDKANLTAMLDFM-FR---TEALAIIKGDEQLTKESTNVSGM--K 300 (461) T ss_pred HHHHHHHHHHHHHHHhCCC--ceecchH--HhhhchHHHHHHHHHHHh-cC---CceEEEEcCCcceEEEecCcCCH--H Confidence 9988888888877766543 4455431 111223333344444432 22 23478888888999888776654 5 Q ss_pred HHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHH-------HhhHHHHHHHHHHHhhccChhhh---hhhhh Q lcl|Aclame:pro 267 DALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIY-------TLLPWVKRHEQAKTRDLLLPSER---KQYFI 336 (419) Q Consensus 267 e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~-------~i~P~~~~i~~~l~~~ll~~~~~---~~~~~ 336 (419) +..+.....||++.+||..++.+...+..++.++..+.|+.. -+.|+++.+.+.+-+..+..... ..+.+ T Consensus 301 ~~l~~~~~~iaa~s~iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~ 380 (461) T protein:vir:80 301 DLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEW 380 (461) T ss_pred HHHHHHHHHHhhhhcCCeeeeecccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccce Confidence 788899999999999999876554445556666666666553 35566666665555444332111 12356 Q ss_pred hhhhhhhhhccHHHHHHH-------HHHHHhCCCcCHHHHHHHh----CCCCCCCcceeeeccccccccccccc--cCCC Q lcl|Aclame:pro 337 EYNLAGLLRGDQSSRYAA-------YAVGRQWGWLSINDIRRLE----NMPPVKGGDIYLSPMNMVDASKPQPI--PMGK 403 (419) Q Consensus 337 ~fd~~~~~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~l----Gl~p~~ggD~~~~~~n~~~~~~~~~~--~~~~ 403 (419) .|.++.+...+.++++++ +.+++.+|++|++|+|+.+ |++|.. .. +.--...++.... +..+ T Consensus 381 ~i~f~~L~~~s~kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 455 (461) T protein:vir:80 381 AIEFNPLWNLDSKTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSS--KF---SGDSAEIDKLAKLVYDAYA 455 (461) T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCc--cC---CCCCchhhhhhhhcccccc Confidence 667778888887777654 7778999999999999865 233321 10 0000111111111 0111 Q ss_pred CCCccc Q lcl|Aclame:pro 404 TEPTKA 409 (419) Q Consensus 404 ~~~~~~ 409 (419) .+++++ T Consensus 456 ~e~~~g 461 (461) T protein:vir:80 456 KKNADG 461 (461) T ss_pred ccCCCC Confidence 111111 No 121 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.70 E-value=3.2e-16 Score=105.53 Aligned_cols=402 Identities=10% Similarity=0.026 Sum_probs=213.6 Q ss_pred CCccchhccccccccc-ccchHHHHhhcCCCcccccc---------------cCHHHHhccHHHHHHHHHHHHhhccCCe Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQP-GSGGWVSALLGSARSEAGQV---------------VTPASALSLTVLQNCVTLLAESIAQLPV 64 (419) Q Consensus 1 M~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~v~~~i~~ia~~ia~~~~ 64 (419) |. ......+ .+...+..++.......... -..+.++..+.|.+|++.+-..|.+++| T Consensus 1 ~~-------~~~~~~~gl~p~rl~~i~~~~~~~~~~~~~~~~~~~Lr~~~~~~ly~~m~~D~hi~s~l~~Rk~av~~~~w 73 (488) T protein:vir:95 1 MA-------DITETQESLPPFRMGEVGSLGLKVKNGRIYEEPRQALRFPESIKTFQLMMRDPAVAASVNIIKMFVRKVNW 73 (488) T ss_pred CC-------CccccCCCCCHHHHHHHHHHhhccccchhhccchhhhcccchHHHHHHHhhChHHHHHHHHHHHHHhcCCc Confidence 33 1111111 12223334432111111100 0234456789999999999999999999 Q ss_pred eEeeecCCccee---eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC-------------CCc--eE Q lcl|Aclame:pro 65 ELYERSGDDRKP---ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ-------------DGV--IQ 126 (419) Q Consensus 65 ~~~~~~~~~~~~---~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~-------------~G~--~~ 126 (419) .|.......... ..-..+..+|.. -..++.+++..+. +.+.+|.+.+++++.. .|. +. T Consensus 74 ~v~p~~~~~~d~~~~~~a~~v~~~l~~---~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~ 149 (488) T protein:vir:95 74 RFVPPKGKEQDPKMLERADFFNSLMDD---MEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWA 149 (488) T ss_pred eEecCCCCchhHHHHHHHHHHHHHHhc---cCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeee Confidence 997543221111 011223333432 2245677777775 5789999999887753 222 45 Q ss_pred EEEEecCc---eeEEEEccceeEEEEe-----------------eccccc-ccceEEEecCCCCCCcccccHHHHHHHHH Q lcl|Aclame:pro 127 GLYPLDNE---AVTVMKGPDLKPMYRV-----------------AGADPL-PQRLVHHVRWMSINGYTGLSPVLLHANAI 185 (419) Q Consensus 127 ~l~~~~~~---~v~~~~~~~~~~~~~~-----------------~~~~~~-~~~~i~~~~~~~~~~~~G~s~~~~~~~~i 185 (419) .+.+.++. ++....+......... .....+ +..-|+|.........+|.+.+..+.-.. T Consensus 150 ~i~~Rpq~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~ 229 (488) T protein:vir:95 150 KLPIRNQSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPW 229 (488) T ss_pred eeeecCcccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCccchhhHHHHHHHHH Confidence 56666664 3333222221111000 001112 33457777666666789999999999999 Q ss_pred HHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh---ccccccCcceecCCCceee-------- Q lcl|Aclame:pro 186 GHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF---GGSGNAKKVALLQEGMKFK-------- 254 (419) Q Consensus 186 ~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~n~g~~~vl~~g~~~~-------- 254 (419) ..-....++...+.+..+.+--+...+.......++++.+.+.+...+.- .+...+| ++++.|+++. T Consensus 230 ~fK~~~~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag--~iiP~g~~~~~k~~~~e~ 307 (488) T protein:vir:95 230 KYKVQIEEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAG--LIWPRYIDPDTKEDIFEF 307 (488) T ss_pred HHHHHHHHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhh--eeeccccccccchhhhhh Confidence 88888999999999886666655555433333333444444444443322 1211233 4555655432 Q ss_pred -ecCcC-hhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh-- Q lcl|Aclame:pro 255 -PLSMT-NVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE-- 330 (419) Q Consensus 255 -~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~-- 330 (419) .++.. ..-..+.++.++-.++|+.+.-=.---.+...+++++ ..+.......+.+.-.+..+++.+|++|+.+.- T Consensus 308 ~l~~~~~~~~~~~~~li~~~d~~Isk~iLGqtLT~~~~~~Gs~A-l~~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~~ 386 (488) T protein:vir:95 308 SLVSRQGAKAYDTGSIIDRYSKQIMMAFMSDVLAMGQSKYGSFS-LADSKTSLLAMSVDILLKQIKNVINRDLVAQTYAL 386 (488) T ss_pred hccccccCCchhHHHHHHHHHHHHHHHHhccccccccCcchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 12222 2233467777888888888764322112222223333 234455566777778888999999998876531 Q ss_pred --h-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCH-----HHHHHHhCCCCCCCcceeeecccccccccccc---- Q lcl|Aclame:pro 331 --R-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSI-----NDIRRLENMPPVKGGDIYLSPMNMVDASKPQP---- 398 (419) Q Consensus 331 --~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~-----NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~---- 398 (419) + ...+..|-++.....|.+..++.+.+++..|..-+ +.+|+.+|+|+-+.+.....+.--.+....+. T Consensus 387 Nfg~~~~~P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~~~~~~~~~~~~~~~ 466 (488) T protein:vir:95 387 NMWDDEEHVQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKLSPNSQSRSGDGYKT 466 (488) T ss_pred cCCCCCCccEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccCCCCCCCCCCcccCC Confidence 1 12222333344456688899999999999998664 56899999997665554443321111100000 Q ss_pred ----ccCCCCCCccccccchhc Q lcl|Aclame:pro 399 ----IPMGKTEPTKAALDEIGR 416 (419) Q Consensus 399 ----~~~~~~~~~~~~~~e~~~ 416 (419) .......+..+..+...| T Consensus 467 ~~~~~~~~~~~~~~~~a~~~~~ 488 (488) T protein:vir:95 467 AGEGTAKTPSAKDPSTANKANK 488 (488) T ss_pred CcccCCcccccccchhhhhccC Confidence 000011111111122222 No 122 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.67 E-value=9.2e-16 Score=103.01 Aligned_cols=394 Identities=9% Similarity=-0.038 Sum_probs=220.7 Q ss_pred CC--cc---chhcccccccccccc------hHHHHh-hcCCCccc--------ccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MF--FS---RQLLSNLGQTQPGSG------GWVSAL-LGSARSEA--------GQVVTPASALSLTVLQNCVTLLAESIA 60 (419) Q Consensus 1 M~--f~---~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~v~~~i~~ia~~ia 60 (419) |- ++ .+..+......+... ..+... +++..... +..-..+..++.+.|.+|++.+...|. T Consensus 1 ~~~~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il~~~~~~~~~y~~m~~D~~i~s~l~~Rk~av~ 80 (491) T protein:vir:79 1 MSKGLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAVK 80 (491) T ss_pred CCCeeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHh Confidence 21 11 011110000000000 000000 00000000 000123445689999999999999999 Q ss_pred cCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-C--ceEEEEEecCceeE Q lcl|Aclame:pro 61 QLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-G--VIQGLYPLDNEAVT 137 (419) Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G--~~~~l~~~~~~~v~ 137 (419) +++|.|...+++.+ ....+..+|. + +.+.+++..+. +.+.+|.++.++++... | .+..+.++++.+++ T Consensus 81 ~~~w~i~~~~~~~~---~a~~i~e~l~-~----~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~ 151 (491) T protein:vir:79 81 ALEWGLDRGKAKSR---VAKSIADVFA-D----LDLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFV 151 (491) T ss_pred CCCcEEecCCCCHH---HHHHHHHHHh-c----CCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEeeeeeccccee Confidence 99999976544322 1123444453 2 34666776664 57889999999976543 3 36789999999888 Q ss_pred EEEccceeEEEEee--ccccc-ccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC Q lcl|Aclame:pro 138 VMKGPDLKPMYRVA--GADPL-PQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD 214 (419) Q Consensus 138 ~~~~~~~~~~~~~~--~~~~~-~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~ 214 (419) ...+....+..... ....+ +...|+|.........+|.|.+..+.-....-....++...+.+.-|.|-.+.+.+.. T Consensus 152 ~d~~~~l~l~~~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~~ 231 (491) T protein:vir:79 152 YDPENQLRFRSKEHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRS 231 (491) T ss_pred eccCCceEEeecCCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCCC Confidence 76544433322221 11223 4456666655556668999999999999999999999999999999999999888754 Q ss_pred CCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecC--cC-hhhHHHHHHHHHHHHHHHHHhcCCHHHccccc Q lcl|Aclame:pro 215 APALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLS--MT-NVDAALIDALRLSALDIARIYKIPAHMVNELE 291 (419) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~--~~-~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~ 291 (419) . ++++.+++.+.+.+.-. ++ .++++.|+++.-+. .. ..-..|.++.++-.++|+.++-= -.+. ... T Consensus 232 a----~~~ek~~l~~al~~~~~---~a--~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLG-qtlT-t~~ 300 (491) T protein:vir:79 232 A----SDAETNLLLDRLEDMVQ---DA--VAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLG-QNQT-TEA 300 (491) T ss_pred C----CHHHHHHHHHHHHHHhc---Ce--EEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhh-hhhc-cCc Confidence 3 45677777777776533 22 46666666655543 22 22334778888888888886521 1111 123 Q ss_pred CcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhh----hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCC-cCH Q lcl|Aclame:pro 292 RATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER----KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGW-LSI 366 (419) Q Consensus 292 ~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~----~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~-~T~ 366 (419) +++++..+ .......+.+.-.+..+++.+|+ ++.+.-. ....+.|.+.... .+.+..++...+++..|+ ++. T Consensus 301 ~gs~a~~~-vh~~v~~~i~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~e~e-e~~~~~a~~~~~L~~~G~~i~~ 377 (491) T protein:vir:79 301 TSTRASAQ-AGLEVTDDIRDGDKAIVVEAMNM-LIRWICDLNFDGAARPVFDMWEQE-QVDEIQAGRDEKLTRAGARFTP 377 (491) T ss_pred ccchhhHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEeecCcC-chhHHHHHHHHHHHhCCCccCH Confidence 34444433 33444566666777788887874 5543221 1112344443322 223567888999999886 899 Q ss_pred HHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCcccc-ccchhcccC Q lcl|Aclame:pro 367 NDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAA-LDEIGRILS 419 (419) Q Consensus 367 NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ 419 (419) +++|+.+|+|+.+.++....+..-.......... ...+..+. +.....+.+ T Consensus 378 ~~~~e~~Gip~~~~~e~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~ 429 (491) T protein:vir:79 378 AYFKRAYNLQDGDLDERPLPVSAVDAVGAASFAE--FEAPDQDALDAALNALSA 429 (491) T ss_pred HHHHHHhCCCCCCCCccccCcCcccccccccccc--cCCCCCcchHHHHHHHHH Confidence 9999999998765555433221111100000000 00001111 111111111 No 123 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.66 E-value=8.4e-16 Score=103.22 Aligned_cols=397 Identities=11% Similarity=-0.025 Sum_probs=220.8 Q ss_pred CCccchhccc--c--cccccccch--------HHHHhhcCCCccccccc--------CHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MFFSRQLLSN--L--GQTQPGSGG--------WVSALLGSARSEAGQVV--------TPASALSLTVLQNCVTLLAESIA 60 (419) Q Consensus 1 M~f~~~~~~~--~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~v~~~i~~ia~~ia 60 (419) |.-+++.... . +...+.... +...-+++........+ ..+.++..+.|.+|++.+...|. T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~~D~hi~s~l~~Rk~av~ 80 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKMLSDGTVKNALNYIFGRIR 80 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHHHHHHhhChHHHHHHHHHHHHHh Confidence 8743322211 0 111111111 11111111111111111 13445678899999999999999 Q ss_pred cCCeeEeeecCCcceeeccchHHHHhhccccc---cCCHHHHHHHHHHHHHHcCCeeEEEeec--CCCc--eEEEEEecC Q lcl|Aclame:pro 61 QLPVELYERSGDDRKPATDHPLYSILKYEPNP---WQTPFEYQEQSQVAVGLRGNSYSFIDRD--QDGV--IQGLYPLDN 133 (419) Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~---~~s~~~f~~~~~~~~l~~G~~~~~i~~~--~~G~--~~~l~~~~~ 133 (419) +++|.|.....+......-..+...|. .++. ..++.+++..+ .+.+++|.+++++++. ..|. +..+.+.++ T Consensus 81 ~~~w~v~p~~~~~~~~~~ae~v~~~l~-~~~~~~~~~~f~~~~~~~-lda~~~G~s~~Eivw~~~~~g~~~~~~l~~r~~ 158 (448) T protein:vir:79 81 SAKWYVEPASTDPEDIAIAAFIHAQLG-IDDASVGKYPFGRLFAIY-ENAYIYGMAAGEIVLTLGADGKLILDKIVPIHP 158 (448) T ss_pred cCCceEecCCCCHHHHHHHHHHHHHhh-hhhhhhccCCHHHHHHHH-HHhhhhcceeEEEEeeecCCCceecccccccCC Confidence 999999643332221111112222332 2221 23455555544 4478899999998864 3454 446666676 Q ss_pred ce---eEEEEccceeEEEEee---------cccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 134 EA---VTVMKGPDLKPMYRVA---------GADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMN 201 (419) Q Consensus 134 ~~---v~~~~~~~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n 201 (419) .. +.+..+.......... +...++..-++|..+......+|.+.+..+.-....-....++...+.+. T Consensus 159 ~~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~ 238 (448) T protein:vir:79 159 FNIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRALILLINHGLER 238 (448) T ss_pred ccccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecCccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 53 3333333222221111 11123444444444444445789999999999999999999999999999 Q ss_pred cCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 202 GTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYK 281 (419) Q Consensus 202 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 281 (419) -|.|--+.+.+..++ .++++.+.+.+...+...|. ++ .++++.|+++.-++.......+.++.++..++|+.+.- T Consensus 239 yG~P~~vgky~~ga~--~~~~~~~~l~~av~~i~~g~-~a--~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iL 313 (448) T protein:vir:79 239 FMIGVPTLTIPKSVR--QGTKQWEAAKEIVKNFVQKP-RH--GIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALG 313 (448) T ss_pred cCCceEEEecCCCCC--cCHHHHHHHHHHHHHHhcCC-ce--EEEecCCceEEEEecCCCcccHHHHHHHHHHHHHHHHh Confidence 999998888875443 23455666666665554443 33 36678888877666554445577788888899988764 Q ss_pred CCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh----h-hh--hhhhhhhhhhhhccHHHHHHH Q lcl|Aclame:pro 282 IPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE----R-KQ--YFIEYNLAGLLRGDQSSRYAA 354 (419) Q Consensus 282 vpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~----~-~~--~~~~fd~~~~~~~d~~~~~~~ 354 (419) = -.+-...++++++...+.......+.+.-.+..++..+|+.|+.+.- + .. -++.|+ .....|.+..++. T Consensus 314 G-qtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P~~~f~--~~e~~Dl~~~a~~ 390 (448) T protein:vir:79 314 I-DFNTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFE--MEERNDFSAAANL 390 (448) T ss_pred h-hhhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEec--CCChHHHHHHHHH Confidence 2 22222222233344333334455666777888899999988876531 1 11 134444 3355678888998 Q ss_pred HHHHHhCCCcCHHHHHHHhCCCC-CCCcceeeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 355 YAVGRQWGWLSINDIRRLENMPP-VKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 355 ~~~~~~~g~~T~NE~R~~lGl~p-~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) +.+++..+...-+-+|+.+|+|. .|+.+ ...+ + .. .+..++......+.-|++ T Consensus 391 ~~~l~~~~~~~~~~~~~~~~~p~~~~~~~-~~a~----~----~~---~~~~~~~~~~~~~~~~~~ 444 (448) T protein:vir:79 391 MGMLINAVKDSEDIPTELKALIDALPSKM-RRAL----G----VV---DEVREAVRQPADSRYLYT 444 (448) T ss_pred hhhhhccchhhHHHHHHhhcCCCCCCCcc-cccc----C----CC---CcccccccCCccccchhh Confidence 88888776655555788889984 44322 1111 0 00 011111222234455555 No 124 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.65 E-value=3.3e-16 Score=105.45 Aligned_cols=410 Identities=10% Similarity=-0.025 Sum_probs=217.9 Q ss_pred CCccchhcccccccccccc----hHHHHhhc--CCCccc--cccc----------------CHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSG----GWVSALLG--SARSEA--GQVV----------------TPASALSLTVLQNCVTLLA 56 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~--~~~~----------------~~~~~~~~~~v~~~i~~ia 56 (419) |.|+++...-..+.....+ ..+..+-+ .+.... ...- +.+-+..+|.+..+|+.+. T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 80 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKLE 80 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 8877765443322111110 11110100 000000 0000 1233457899999999877 Q ss_pred HhhccC-CeeEeee--cCCcce-eeccchHHHHhh---cc--ccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC----- Q lcl|Aclame:pro 57 ESIAQL-PVELYER--SGDDRK-PATDHPLYSILK---YE--PNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD----- 122 (419) Q Consensus 57 ~~ia~~-~~~~~~~--~~~~~~-~~~~~~~~~lL~---~~--pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~----- 122 (419) ..+-.. -+.+..+ ..+... +.....+..++. .. ....++.+++.+.++..++..|++|+.+.+... T Consensus 81 ~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~~ 160 (502) T protein:vir:79 81 ERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLTP 160 (502) T ss_pred HhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCccCC Confidence 776643 3333221 111111 001111222222 21 223567888999999999999999999865432 Q ss_pred --CceEEEEEecCceeEE------------EEccceeEEEEeec-----------ccccccceEEEec-CCCCCCccccc Q lcl|Aclame:pro 123 --GVIQGLYPLDNEAVTV------------MKGPDLKPMYRVAG-----------ADPLPQRLVHHVR-WMSINGYTGLS 176 (419) Q Consensus 123 --G~~~~l~~~~~~~v~~------------~~~~~~~~~~~~~~-----------~~~~~~~~i~~~~-~~~~~~~~G~s 176 (419) +.+..|..++|+++.. ..+..+....|+.. ...++.+.|+|+. ........|+| T Consensus 161 g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~RGis 240 (502) T protein:vir:79 161 SAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQMRGTS 240 (502) T ss_pred CcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccccCCc Confidence 3467888999988742 22333332222211 1234555555555 44566799999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcce-ecCCCceeee Q lcl|Aclame:pro 177 PVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVA-LLQEGMKFKP 255 (419) Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~-vl~~g~~~~~ 255 (419) .+..++..+.......+......+-.+...++|+.+....... +.... .-..... .-..|.++ .|..|.+++. T Consensus 241 ~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~--~~~~~---~~~~~~~-~l~pG~i~~~L~pGe~i~~ 314 (502) T protein:vir:79 241 LLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEP--DGNGS---KENEREL-TIQPGIIYDDLKPGEEIGM 314 (502) T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccc--ccCCC---CCccccc-cccCCccccccCCCceeee Confidence 9999999998888777777777677777788887653221110 00000 0000000 11235554 5899999998 Q ss_pred cCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHH-----------HhhHHHHH-HHHHHHh Q lcl|Aclame:pro 256 LSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIY-----------TLLPWVKR-HEQAKTR 323 (419) Q Consensus 256 l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~-----------~i~P~~~~-i~~~l~~ 323 (419) ++.+-....|.+..+...+.||+++|||...+...-++|||++......+.+. -+.|+... ++.++.. T Consensus 315 ~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~ 394 (502) T protein:vir:79 315 VKSDRPNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVAS 394 (502) T ss_pred eCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc Confidence 88665566789999999999999999998876655556888776655554433 22232222 2222222 Q ss_pred hccCh-hh-hhhh--hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCc----------ceeeeccc Q lcl|Aclame:pro 324 DLLLP-SE-RKQY--FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGG----------DIYLSPMN 389 (419) Q Consensus 324 ~ll~~-~~-~~~~--~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~gg----------D~~~~~~n 389 (419) -.+.. .. .... .+.+-.-.....|+...++....++++|+.|.-++-+..|.+|-+-- +++=++.. T Consensus 395 G~i~~p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~ 474 (502) T protein:vir:79 395 GVIRLPRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKLDLVFD 474 (502) T ss_pred CCCCCCCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCC Confidence 22211 10 0111 11121223344588888888999999999999999888999984321 12222222 Q ss_pred cccccccc-cccCCCCCCccccccchhc Q lcl|Aclame:pro 390 MVDASKPQ-PIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 390 ~~~~~~~~-~~~~~~~~~~~~~~~e~~~ 416 (419) ..|...+. .....+.++.+..+++.+. T Consensus 475 ~~~~~~~~~~~~~~~~~e~~~~~~~~e~ 502 (502) T protein:vir:79 475 TDPASDKGGSSAATKRQEPQHTDDQSEE 502 (502) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 22211111 1111111111111222222 No 125 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.64 E-value=8e-16 Score=103.36 Aligned_cols=393 Identities=8% Similarity=-0.061 Sum_probs=220.4 Q ss_pred CC--ccch---hcccccccccc------cchHHHHhhcCCCcccc---------cccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MF--FSRQ---LLSNLGQTQPG------SGGWVSALLGSARSEAG---------QVVTPASALSLTVLQNCVTLLAESIA 60 (419) Q Consensus 1 M~--f~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~~i~~ia~~ia 60 (419) |- ++.- .........+. ...++.....+.+.... ..-..+..++.+.|.+|++.+...|. T Consensus 1 m~~~i~~~~g~p~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m~~D~~i~s~l~~Rk~av~ 80 (491) T protein:vir:10 1 MSKGLWVSPTEFVTFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAVK 80 (491) T ss_pred CCCceeCCCCCccCcccCChHHHHHHHhhhcccccccccCCccchHHHHHhcCCCHHHHHHHhhChHHHHHHHHHHHHHh Confidence 21 0000 00000000000 00000000000000000 00112445678999999999999999 Q ss_pred cCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCC---ceEEEEEecCceeE Q lcl|Aclame:pro 61 QLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDG---VIQGLYPLDNEAVT 137 (419) Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G---~~~~l~~~~~~~v~ 137 (419) +++|.|...+++.+. ...+..+|. + ..+.+++..+. +.+++|.+..++++...| .+..+.++++.++. T Consensus 81 ~~~w~i~~~~~~~~~---~e~v~e~l~-~----~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~ 151 (491) T protein:vir:10 81 ALEWGLDRGKAKSRV---AKSIADVFA-D----LDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFV 151 (491) T ss_pred CCCcEEecCCCCHHH---HHHHHHHHh-c----CCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeeccccee Confidence 999999765443221 123444443 2 35677887775 678999999998876543 36789999999888 Q ss_pred EEEccceeEEEEee---cccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC Q lcl|Aclame:pro 138 VMKGPDLKPMYRVA---GADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD 214 (419) Q Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~ 214 (419) +..+....+..... +....+...|+|........++|.|.+..+.-....-....++...+.+.-|.|-.+.+.+.. T Consensus 152 ~d~~~~l~~~~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~ 231 (491) T protein:vir:10 152 YDPENQLRFRSKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPRS 231 (491) T ss_pred eccCCceEEecCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCC Confidence 76544433322211 112234456777765566678999999999999999999999999999999999999998754 Q ss_pred CCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecC--cCh-hhHHHHHHHHHHHHHHHHHhcCCHHHccccc Q lcl|Aclame:pro 215 APALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLS--MTN-VDAALIDALRLSALDIARIYKIPAHMVNELE 291 (419) Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~--~~~-~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~ 291 (419) . ++++.+++.+.+.+.-. + ..++++.|+++.-+. .+. .-..|.++.++-.++|+.++-=- .+. ... T Consensus 232 a----~~~ek~~l~~al~~~~~---~--a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGq-tlT-t~~ 300 (491) T protein:vir:10 232 A----SDGEKNLLLDCLEDMVQ---D--AVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQ-NQT-TEA 300 (491) T ss_pred C----CHHHHHHHHHHHHHHhc---C--cEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhh-hcc-cCc Confidence 4 45677777777777533 2 246667776665543 222 22347788888888888774311 111 122 Q ss_pred CcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh----hhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCC-cCH Q lcl|Aclame:pro 292 RATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE----RKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGW-LSI 366 (419) Q Consensus 292 ~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~----~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~-~T~ 366 (419) +++++..+ .......+.+.-.+..++..+|+ |+.+.- +......|.+... ..+.+..++...+++..|+ ++. T Consensus 301 ~gs~a~~~-vh~~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~-~e~~~~~a~~~~~L~~~G~~i~~ 377 (491) T protein:vir:10 301 TSTRASAQ-AGLEVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQ-EQVDEIQAGRDQKLTQAGARFTP 377 (491) T ss_pred ccchhHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCc-CchhHHHHHHHHHHHhCCCcCCH Confidence 33444333 33444566666677777777774 554321 1111233433332 2334778999999999886 899 Q ss_pred HHHHHHhCCCCCCCcceeeec-cccccccccccccCCCCCCcccc-ccchhcccC Q lcl|Aclame:pro 367 NDIRRLENMPPVKGGDIYLSP-MNMVDASKPQPIPMGKTEPTKAA-LDEIGRILS 419 (419) Q Consensus 367 NE~R~~lGl~p~~ggD~~~~~-~n~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~~ 419 (419) .++|+.+|+|+-+.+....-. .+-...... ......+..+. ++....+.+ T Consensus 378 ~~i~e~~Gip~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~d~~~~~~~~ 429 (491) T protein:vir:10 378 AYFKRAYNLQDGDLDERPLPVSAVDTVGAAS---FAEFEAPDQDALDAALNTLSA 429 (491) T ss_pred HHHHHHhCCCCCCcCccccccCCCCCccccc---ccccCCCCCCchHHHHHHHHH Confidence 999999999876544433211 111100000 00001111111 111222222 No 126 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.63 E-value=1.8e-16 Score=106.96 Aligned_cols=405 Identities=12% Similarity=0.016 Sum_probs=218.8 Q ss_pred CCccchhcccccccccc-cchHHHH------------hhcCCCccc-----------ccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPG-SGGWVSA------------LLGSARSEA-----------GQVVTPASALSLTVLQNCVTLLA 56 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~-----------~~~~~~~~~~~~~~v~~~i~~ia 56 (419) |-+..+..+........ ....... +....+..+ ...-+.+-+..+|.+..+|+.+. T Consensus 8 ~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 87 (505) T protein:vir:96 8 PSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYAKRFYQLLK 87 (505) T ss_pred cchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 44433332211100000 0000000 000000000 01112334557899999999777 Q ss_pred Hhhcc-CCeeEeeecC--Cccee-ecc---chHHHHhhccccc----cCCHHHHHHHHHHHHHHcCCeeEEEeecCCC-c Q lcl|Aclame:pro 57 ESIAQ-LPVELYERSG--DDRKP-ATD---HPLYSILKYEPNP----WQTPFEYQEQSQVAVGLRGNSYSFIDRDQDG-V 124 (419) Q Consensus 57 ~~ia~-~~~~~~~~~~--~~~~~-~~~---~~~~~lL~~~pn~----~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G-~ 124 (419) ..+-+ .-++...... ++... ... ..+...+-..+|. .++..++.+.+...++..|++|+.+.+...+ . T Consensus 88 ~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~~ 167 (505) T protein:vir:96 88 NNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREHRGYPNKW 167 (505) T ss_pred HHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEeecCCCCc Confidence 76664 4565543321 11111 011 1222233344443 4568888999999999999999988655433 3 Q ss_pred eEEEEEecCceeEEEE----------------ccceeEE-EEee----c------------ccccccceEEE-ecCCCCC Q lcl|Aclame:pro 125 IQGLYPLDNEAVTVMK----------------GPDLKPM-YRVA----G------------ADPLPQRLVHH-VRWMSIN 170 (419) Q Consensus 125 ~~~l~~~~~~~v~~~~----------------~~~~~~~-~~~~----~------------~~~~~~~~i~~-~~~~~~~ 170 (419) +..|.+++|+++.... +..+... |++. + ...++.+.|+| +...... T Consensus 168 ~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~f~~~r~g 247 (505) T protein:vir:96 168 GYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHTFVPWRPH 247 (505) T ss_pred ceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhhhcccCCc Confidence 5678888888874322 1222221 2111 0 11244444544 4455567 Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCC Q lcl|Aclame:pro 171 GYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEG 250 (419) Q Consensus 171 ~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g 250 (419) ...|+|.+..++..+.......+......+=.+...++|+.+....+....+.-.. . ...-..|.+..|..| T Consensus 248 Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~-------~-~~~l~pG~i~~L~pG 319 (505) T protein:vir:96 248 QNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVGFYEQDPEAYDQPPEDDQGE-------I-VEEVEAGTYQLLPYG 319 (505) T ss_pred cccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCccCCCccccccCc-------c-ccccCCceeeecCCC Confidence 79999999999999988877777777766767777888877543322111111000 0 011235778999999 Q ss_pred ceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHH-----------HHhhHHHHH-H Q lcl|Aclame:pro 251 MKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVI-----------YTLLPWVKR-H 317 (419) Q Consensus 251 ~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~-----------~~i~P~~~~-i 317 (419) .+++.++.+--...|.+..+...+.||+.+|||...+ |...+.|||...+....+++ .-+.|+... + T Consensus 320 e~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l 399 (505) T protein:vir:96 320 IRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGNLI 399 (505) T ss_pred CeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9999988765567789999999999999999998866 55566788876655544433 334443333 3 Q ss_pred HHHHHhhccC-hhhhhhh--hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce------eeecc Q lcl|Aclame:pro 318 EQAKTRDLLL-PSERKQY--FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI------YLSPM 388 (419) Q Consensus 318 ~~~l~~~ll~-~~~~~~~--~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~------~~~~~ 388 (419) +.++..-.++ +...... .+.+-.-.....|+...++....++++|+.|.-|+-.+.|.++-+--++ .+.-. T Consensus 400 ~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~ 479 (505) T protein:vir:96 400 SMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIAWEEQLMRDK 479 (505) T ss_pred HHHHHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHc Confidence 3333332222 1111111 1222222344458888899999999999999999988899998432111 11112 Q ss_pred cccccccccccc-CCCCCCccccccc Q lcl|Aclame:pro 389 NMVDASKPQPIP-MGKTEPTKAALDE 413 (419) Q Consensus 389 n~~~~~~~~~~~-~~~~~~~~~~~~e 413 (419) +..+........ ...+++...+.|| T Consensus 480 Gl~~~~~~~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 480 GVNPTPPEQESKDATTDEEDDSASDD 505 (505) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 222211111111 1112222222233 No 127 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.62 E-value=1.5e-15 Score=101.91 Aligned_cols=413 Identities=11% Similarity=0.003 Sum_probs=214.8 Q ss_pred CCccchhccc--cccc--ccccchHHHHhhcCCCcc---------cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MFFSRQLLSN--LGQT--QPGSGGWVSALLGSARSE---------AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~f~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) |+...+..+. .+.. ......-...+.+...+. ....-+.+-+..+|.+..||+.+...+-...|++. T Consensus 7 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG~Gi~~~ 86 (530) T protein:vir:38 7 VGPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIVGSFFRLS 86 (530) T ss_pred ecCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhCCCceee Confidence 2221110000 0000 000000000101100000 00111234456799999999999888887788776 Q ss_pred eecC------Cccee-eccchHHHHh---hcccc------ccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-C--ceEEE Q lcl|Aclame:pro 68 ERSG------DDRKP-ATDHPLYSIL---KYEPN------PWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-G--VIQGL 128 (419) Q Consensus 68 ~~~~------~~~~~-~~~~~~~~lL---~~~pn------~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G--~~~~l 128 (419) .+.+ ++... .....+..++ -..|+ ..++..++.+.++..++..|++++.+.+... | .+..| T Consensus 87 ~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g~~~~~~l 166 (530) T protein:vir:38 87 YRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDSTRLFRTQF 166 (530) T ss_pred eccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCCCccceEE Confidence 4321 11111 1111222233 23333 2468889999999999999999998876533 3 25678 Q ss_pred EEecCceeEEE--------------EccceeEE-EEeecc----------------cccccceEEEec-CCCCCCccccc Q lcl|Aclame:pro 129 YPLDNEAVTVM--------------KGPDLKPM-YRVAGA----------------DPLPQRLVHHVR-WMSINGYTGLS 176 (419) Q Consensus 129 ~~~~~~~v~~~--------------~~~~~~~~-~~~~~~----------------~~~~~~~i~~~~-~~~~~~~~G~s 176 (419) ..++|+++.-. .+..+... |++... ...+.+.|+|+. ........|+| T Consensus 167 q~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r~gQ~RGis 246 (530) T protein:vir:38 167 KMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPMEDGQTRGAN 246 (530) T ss_pred EEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccCCCcccCCc Confidence 88888877422 12222221 111100 112233455554 44567899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchh-------hHHHHHHHHHHHHHH---hcc---ccccCc Q lcl|Aclame:pro 177 PVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALK-------DQASVDRITDGWNAK---FGG---SGNAKK 243 (419) Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~---~~g---~~n~g~ 243 (419) .+..++..+.....-.+......+-.+...++|+.+....... ...+...+....... +.+ .-..|. T Consensus 247 ~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~ 326 (530) T protein:vir:38 247 AFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAPVRLGGAR 326 (530) T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeeccCCccccccccccCCcccccccccccchhhhhcccccceeccCce Confidence 9999999998887777777666666777777777654221100 001111111111000 000 113567 Q ss_pred ceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHHH-----------Hhh Q lcl|Aclame:pro 244 VALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIY-----------TLL 311 (419) Q Consensus 244 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~~-----------~i~ 311 (419) +..|..|.+++..+.+--..+|.+..+...+.||+++|||...+ |.....|||+..+....+.+. -+. T Consensus 327 i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~ 406 (530) T protein:vir:38 327 VPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKFVASRQAC 406 (530) T ss_pred eeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 88899999999888665567789999999999999999998866 556677888666554444332 333 Q ss_pred HHHHH-HHHHHHhhccChhhh--------hh--hhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 312 PWVKR-HEQAKTRDLLLPSER--------KQ--YFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG 380 (419) Q Consensus 312 P~~~~-i~~~l~~~ll~~~~~--------~~--~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g 380 (419) |+... ++.++.+-.+.-..+ .. ..+.+-.-.....|+...++....++++|+.|.-++-.+.|.++-+- T Consensus 407 pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~~v 486 (530) T protein:vir:38 407 QMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEI 486 (530) T ss_pred HHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHH Confidence 43333 233333332221000 00 01122222234458888888999999999999999988899987432 Q ss_pred ----------cceeeecccccccccc-ccccCCCCCCccccccchhc Q lcl|Aclame:pro 381 ----------GDIYLSPMNMVDASKP-QPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 381 ----------gD~~~~~~n~~~~~~~-~~~~~~~~~~~~~~~~e~~~ 416 (419) .+++=++....+.... ......+. +..++.++. T Consensus 487 ~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~---~~~d~~~~a 530 (530) T protein:vir:38 487 FAQQVRESMERRAAGLNPPAWAAAAFEAGVKKSNE---EEQDGARAA 530 (530) T ss_pred HHHHHHHHHHHHHcCCCCCCCcccccCCCCCCCCC---CCCCCCCCC Confidence 1121111111111111 01111111 111111222 No 128 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.62 E-value=4.3e-15 Score=99.36 Aligned_cols=395 Identities=12% Similarity=0.008 Sum_probs=216.8 Q ss_pred CCccchhccccccccccc--c-----------hHHHHhhcCCCcccc-------ccc-CHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGS--G-----------GWVSALLGSARSEAG-------QVV-TPASALSLTVLQNCVTLLAESI 59 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~~v~~~i~~ia~~i 59 (419) |.-+++. .+.....+.. . .+...-+.+...... ..+ ..+.++..+.|.+|+..+...| T Consensus 1 m~kk~~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~~D~hi~s~l~~Rk~av 79 (448) T protein:vir:77 1 MAKRGRK-PKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKMLSDGTVKNALNYIFGRI 79 (448) T ss_pred CCCCCCC-CcccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchHHHHHHhhChHHHHHHHHHHHHH Confidence 8843322 2111111110 0 011110111110000 001 1344567899999999999999 Q ss_pred ccCCeeEeeecCCcceeeccchHHHHhhcccc---ccCCHHHHHHHHHHHHHHcCCeeEEEeec--CCCc--eEEEEEec Q lcl|Aclame:pro 60 AQLPVELYERSGDDRKPATDHPLYSILKYEPN---PWQTPFEYQEQSQVAVGLRGNSYSFIDRD--QDGV--IQGLYPLD 132 (419) Q Consensus 60 a~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn---~~~s~~~f~~~~~~~~l~~G~~~~~i~~~--~~G~--~~~l~~~~ 132 (419) .+++|.|...+.+......-..+...|. .+. ...++.+++..+ .+.+.+|.+.+++++. ..|. +..+.+.+ T Consensus 80 ~~~~w~v~p~~~~~~d~~~ae~v~~~l~-~~~~~~~~~~f~~~i~~~-lda~~~G~s~~Eivw~~~~dg~~~~~~l~~r~ 157 (448) T protein:vir:77 80 RSAKWYVEPASTDPEDIAIAAFIHAQLG-IDDASVGKYPFGRLFAIY-ENAYIYGMAAGEIVLTLGADGKLILDKIVPIH 157 (448) T ss_pred hcCCceEecCCCCHHHHHHHHHHHHHhh-chhhhhccCCHHHHHHHH-HHhhhhcceeEEEEEeecCCCceeeccccccC Confidence 9999999653333221111122223332 121 123667778777 5789999999998764 3454 44666767 Q ss_pred CceeE-EEEccceeEEEEe--e---------cccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 133 NEAVT-VMKGPDLKPMYRV--A---------GADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFM 200 (419) Q Consensus 133 ~~~v~-~~~~~~~~~~~~~--~---------~~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 200 (419) +..+. ...+.++...... . +...++..-++|..+.....++|.|.+..+.-....-....++...+.+ T Consensus 158 ~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E 237 (448) T protein:vir:77 158 PFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHNDDGSFTGQSALRAAVPHWLAKRALILLINHGLE 237 (448) T ss_pred CCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecCCcCCcccchHHHHHHHHHHHHHhhHHHHHHHHH Confidence 65432 2222222222211 1 1122344444555544445578999999999999999999999999999 Q ss_pred ccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 201 NGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIY 280 (419) Q Consensus 201 ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 280 (419) .-|.|--+.+.+..++ .++++++.+.+...+...|. ++ .++++.|+++.-++.......+.+..++..++|+.+. T Consensus 238 ~yG~P~~vgky~~ga~--~~~~~~~~l~~av~~i~~g~-~a--~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk~i 312 (448) T protein:vir:77 238 RFMIGVPTLTIPKSVR--QGTKQWEAAKEIVKNFVQKP-RH--GIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARAL 312 (448) T ss_pred HcCCceeEEecCCCCC--CCHHHHHHHHHHHHHHhcCC-ce--EEEecCCceEEEEecCCCccCHHHHHHHHHHHHHHHH Confidence 9999999988876443 24556666666666543443 33 3667788877666554444456778888899999887 Q ss_pred cCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh----h-hh--hhhhhhhhhhhhccHHHHHH Q lcl|Aclame:pro 281 KIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE----R-KQ--YFIEYNLAGLLRGDQSSRYA 353 (419) Q Consensus 281 gvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~----~-~~--~~~~fd~~~~~~~d~~~~~~ 353 (419) .- ..+-...+++++++..+.......+.+.-.+..|++.+|+.|+.+.- + .. -++.|+.. ...|.+..++ T Consensus 313 LG-qtlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~~~--e~eDl~~~a~ 389 (448) T protein:vir:77 313 GI-DFNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFEME--ERNDFSAAAN 389 (448) T ss_pred hc-cccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEecCC--ChhhHHHHHH Confidence 53 23322233334444444434456676777888999999988876431 1 11 24455543 4567788888 Q ss_pred HHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 354 AYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 354 ~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) .+.+++ +-+|+.+|+|.--++.....|. .+ .+......++.++..+..+.-++ T Consensus 390 ~~~~l~-------~~~~~~~~ip~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~ 442 (448) T protein:vir:77 390 LMGMLI-------NAVKDSEDIPTELKALIDALPS--KM----RRALGVVDEVREAVRQPADSRYL 442 (448) T ss_pred HhHHHH-------HHHHHHhcCCccCCcCCCCCch--hc----ccccCCCCCCCchhhcchhhHHH Confidence 877765 4589999997532221111111 00 00000001111111122222222 No 129 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.57 E-value=5.7e-15 Score=98.68 Aligned_cols=412 Identities=11% Similarity=-0.014 Sum_probs=215.6 Q ss_pred CCccchhcccccccccccc----hHHHHhhcCCCcc----cccccC----------------HHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSG----GWVSALLGSARSE----AGQVVT----------------PASALSLTVLQNCVTLLA 56 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~----------------~~~~~~~~~v~~~i~~ia 56 (419) |.|+++..+...+.....+ ..+..+-+..... .....+ .+-+..++.+..+|+.+. T Consensus 1 Mn~iDr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av~~~~ 80 (548) T protein:vir:95 1 MNLIDRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKRQPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLLDRLE 80 (548) T ss_pred CchHHhHhhhcchHHHHHHHHhHHHhccccccCccccccccCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 9988876555433221111 1111111110000 001111 223456889999999876 Q ss_pred Hhhcc---CCeeEeeecCCcceeec-cchHH---HHhhccc--cccCCHHHHHHHHHHHHHHcCCeeEEEeecCC----- Q lcl|Aclame:pro 57 ESIAQ---LPVELYERSGDDRKPAT-DHPLY---SILKYEP--NPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD----- 122 (419) Q Consensus 57 ~~ia~---~~~~~~~~~~~~~~~~~-~~~~~---~lL~~~p--n~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~----- 122 (419) ..+-. +-++-.....+...... ...+. ..+-..+ ...++.+++.+.++..++..|++++.+.+... T Consensus 81 ~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~~~~~ 160 (548) T protein:vir:95 81 ERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVPNYTF 160 (548) T ss_pred HhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccccccC Confidence 65553 22222222222111110 11112 2222222 23567889999999999999999998865432 Q ss_pred --CceEEEEEecCceeEEEEc-------------cceeEEEE-ee----c----------ccccccceEEEec-CCCCCC Q lcl|Aclame:pro 123 --GVIQGLYPLDNEAVTVMKG-------------PDLKPMYR-VA----G----------ADPLPQRLVHHVR-WMSING 171 (419) Q Consensus 123 --G~~~~l~~~~~~~v~~~~~-------------~~~~~~~~-~~----~----------~~~~~~~~i~~~~-~~~~~~ 171 (419) ..+..|..|+|+++....+ ..+...-| +. + ...++.+.|+|+. ...... T Consensus 161 g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~r~gQ 240 (548) T protein:vir:95 161 ATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRKRIGQ 240 (548) T ss_pred CcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheecccccCCcc Confidence 2356888888888742222 22221111 11 1 1224455555554 445667 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcce-ecCCC Q lcl|Aclame:pro 172 YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVA-LLQEG 250 (419) Q Consensus 172 ~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~-vl~~g 250 (419) ..|+|.+..++..+.......+......+=.+...++|+.+.......... + ..-.. .-.-..|.++ .|..| T Consensus 241 ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~fi~~~~~~~~~~~~~--~---~~~~~--~~~~~pG~iv~~L~pG 313 (548) T protein:vir:95 241 NRGVPMLHAVLIRLADLKDYEESERVAARISAALAMYIKKGNPDSYTVEPG--K---DRKNR--TIPIAPGMVFDDLEPG 313 (548) T ss_pred ccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCccccCCCC--c---ccccc--cccccCCccccccCCC Confidence 999999999999998887777777776666777788887653321111000 0 00000 0011235554 58899 Q ss_pred ceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHH-----------HhhHHHHH-HH Q lcl|Aclame:pro 251 MKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIY-----------TLLPWVKR-HE 318 (419) Q Consensus 251 ~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~-----------~i~P~~~~-i~ 318 (419) .+++.++.+--...|.+..+...+.||+.+|||...+....++|||+.......+++. -+.|+... ++ T Consensus 314 e~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle 393 (548) T protein:vir:95 314 EDVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQ 393 (548) T ss_pred ceeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9988887665566789999999999999999998876554456888776555544433 22332222 22 Q ss_pred HHHHhhccC-hhh-hhhhhhhhhh--hhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC----------ccee Q lcl|Aclame:pro 319 QAKTRDLLL-PSE-RKQYFIEYNL--AGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG----------GDIY 384 (419) Q Consensus 319 ~~l~~~ll~-~~~-~~~~~~~fd~--~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g----------gD~~ 384 (419) .++..-.+. |.. ....++..++ -.....|....++....++++|+.|.-|+-.+.|.++-+- .+++ T Consensus 394 ~a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~ 473 (548) T protein:vir:95 394 MYLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAA 473 (548) T ss_pred HHHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc Confidence 222222221 110 0111122221 2234458888889999999999999999988889887431 1111 Q ss_pred eeccccccccccccccCCCCCCc---------cccccchhcccC Q lcl|Aclame:pro 385 LSPMNMVDASKPQPIPMGKTEPT---------KAALDEIGRILS 419 (419) Q Consensus 385 ~~~~n~~~~~~~~~~~~~~~~~~---------~~~~~e~~~~~~ 419 (419) =++....+..........+.++. ..+.+|..+++- T Consensus 474 GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (548) T protein:vir:95 474 GLVFSSDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEARELVN 517 (548) T ss_pred CCCCCCcccccccccccCCCCchhhhccccccccccchhHHhhc Confidence 12211111111111111111111 122344444333 No 130 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.57 E-value=5.9e-15 Score=98.61 Aligned_cols=408 Identities=13% Similarity=0.072 Sum_probs=209.8 Q ss_pred CCccchhcccccccccccchHHH--HhhcCCCcccc-ccc----------------CHHHHhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVS--ALLGSARSEAG-QVV----------------TPASALSLTVLQNCVTLLAESIAQ 61 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~----------------~~~~~~~~~~v~~~i~~ia~~ia~ 61 (419) |-|.+.......... ....... +..+.+..+.. ... +.+-+..+|.+..+|+.+...+-. T Consensus 1 m~~~~~~~~a~~~~~-~~~~~~~~y~aa~~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~~vVG 79 (495) T protein:vir:10 1 MNMTPSGYQSLASGL-LVPVGASAYEGASGGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWVAAAVG 79 (495) T ss_pred CCcccccccccchhh-hhHHHhhhhhccccCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC Confidence 765544221110000 0000000 00001110000 001 123345789999999988888865 Q ss_pred CCeeEeeecCCcceeeccchHHHHhhccc--cccCCHHHHHHHHHHHHHHcCCeeEEEeecC--CC--ceEEEEEecCce Q lcl|Aclame:pro 62 LPVELYERSGDDRKPATDHPLYSILKYEP--NPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ--DG--VIQGLYPLDNEA 135 (419) Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~p--n~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~--~G--~~~~l~~~~~~~ 135 (419) ..|+......+......-..+...+...+ ...++.+++.+.++..++..|++|+.+.... .| .+..|..++|++ T Consensus 80 ~Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lqliepd~ 159 (495) T protein:vir:10 80 NGLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQIIEPDM 159 (495) T ss_pred CCcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEEechhh Confidence 56665444333221111122222233222 2356888899999999999999998876442 23 467888888888 Q ss_pred eEEEEc-----------------cceeEE-EEee----c----------ccccccceEEEecCCCCCCcccccHHHHHHH Q lcl|Aclame:pro 136 VTVMKG-----------------PDLKPM-YRVA----G----------ADPLPQRLVHHVRWMSINGYTGLSPVLLHAN 183 (419) Q Consensus 136 v~~~~~-----------------~~~~~~-~~~~----~----------~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~ 183 (419) +....+ ..+... |++. + ...++.++|+|+.........|+|.+..+. T Consensus 160 l~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~~r~gQ~RGis~la~i~- 238 (495) T protein:vir:10 160 LASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTVLTVRSDAGAPWFQLLL- 238 (495) T ss_pred cCCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccccCCCcccCcchhHHHH- Confidence 842111 111111 1111 1 123566777787654556789998665444 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHH-HHHHHHhccccccCcceecCCCceeeecCcChhh Q lcl|Aclame:pro 184 AIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT-DGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVD 262 (419) Q Consensus 184 ~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d 262 (419) .+.......+......+-.+...++|+.+..... ..+....-. +.-..... .-..|.+..|..|.+++.++.+... T Consensus 239 ~l~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~--~~~~~~~~~~~~~~~~~~-~l~pG~i~~L~pGe~i~~~~p~~p~ 315 (495) T protein:vir:10 239 RLNELDQYEDAELVRKKTAALFAAFIQEATADST--GGPTIGQPKRSKGGKRIT-GLNPGTLQYLQPGQEVKFSNPADVG 315 (495) T ss_pred HHHHhhHHHHHHHHHHHHhhhheeeeecCCCccc--cccccCccccccCcccce-ecCCceeeecCCCCeeeeeCCCCCC Confidence 4555444444444444555666677765432111 000000000 00000000 1245678999999999988876556 Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHHHH-------hhH-HHH----H-HHHHHHhhccC- Q lcl|Aclame:pro 263 AALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIYT-------LLP-WVK----R-HEQAKTRDLLL- 327 (419) Q Consensus 263 ~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~~~-------i~P-~~~----~-i~~~l~~~ll~- 327 (419) ..|.+..+...+.||+.+|||...+ |...+.|||+..+....+.+.. +.| +|. . ++.++..-.+. T Consensus 316 ~~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~ 395 (495) T protein:vir:10 316 TTYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVI 395 (495) T ss_pred CCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC Confidence 6788999999999999999999865 5666778887765554443322 222 122 1 22222222221 Q ss_pred hhhh--hhhh--hhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC----------cceeeeccccccc Q lcl|Aclame:pro 328 PSER--KQYF--IEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG----------GDIYLSPMNMVDA 393 (419) Q Consensus 328 ~~~~--~~~~--~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g----------gD~~~~~~n~~~~ 393 (419) |... ...+ +.+-.-.....|....++....++++|+.|.-++-+..|.++-+- .+++=++.+..|. T Consensus 396 p~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~p~ 475 (495) T protein:vir:10 396 PDYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEELFDMISDANQLIDEYDLRLDSDPR 475 (495) T ss_pred CCchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCC Confidence 1111 1111 222223344568888899999999999999999988899998431 1122122211111 Q ss_pred cccccccCCCCCCccccccchhc Q lcl|Aclame:pro 394 SKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 394 ~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) ...+ .+..++.....+++++ T Consensus 476 ~~~~---~~~~~~~~~~~~~~~e 495 (495) T protein:vir:10 476 YVNG---SGAEQKSVMEAALNNE 495 (495) T ss_pred cCCC---ccCCCCCCCCCCCCCC Confidence 1111 1111112222223333 No 131 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.55 E-value=1e-14 Score=97.32 Aligned_cols=414 Identities=11% Similarity=0.017 Sum_probs=215.8 Q ss_pred CCccchhccc--cccc--ccccchHHHHhhcCCCcc---------cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MFFSRQLLSN--LGQT--QPGSGGWVSALLGSARSE---------AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~f~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) ++..+...+. .+.. .+..+.-+..+.+...+. ....-+.+-+..+|.+..||+.+...+-.-.|++. T Consensus 10 ~~~~~~~~~~~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG~Gi~~~ 89 (533) T protein:vir:34 10 LGPDGMTSLREYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDHIVGSFFRLS 89 (533) T ss_pred hcccccchHHHHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhCCCceee Confidence 1111000000 0000 000000000111100000 00011133345799999999988888866677765 Q ss_pred eecC------Cccee-eccch---HHHHhhcccc------ccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-C--ceEEE Q lcl|Aclame:pro 68 ERSG------DDRKP-ATDHP---LYSILKYEPN------PWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-G--VIQGL 128 (419) Q Consensus 68 ~~~~------~~~~~-~~~~~---~~~lL~~~pn------~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G--~~~~l 128 (419) .+.. ++... ..... +...+-..++ ..++.+++.+.++..++..|++|+.+.+... | .+..| T Consensus 90 ~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~g~~~~~~l 169 (533) T protein:vir:34 90 HRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTSSSRLFRTQF 169 (533) T ss_pred eccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeeccCCCCccceEE Confidence 4321 11110 11112 2222333333 3457889999999999999999998865443 3 25678 Q ss_pred EEecCceeEEEE--------------ccceeEE-EEee----cc------------ccccc-ceEEEecCCCCCCccccc Q lcl|Aclame:pro 129 YPLDNEAVTVMK--------------GPDLKPM-YRVA----GA------------DPLPQ-RLVHHVRWMSINGYTGLS 176 (419) Q Consensus 129 ~~~~~~~v~~~~--------------~~~~~~~-~~~~----~~------------~~~~~-~~i~~~~~~~~~~~~G~s 176 (419) ..++|+++.-.. +..+... |++. +. ...+. ++||++.........|+| T Consensus 170 q~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~~r~gQ~RGis 249 (533) T protein:vir:34 170 RMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEPVEDGQTRGAN 249 (533) T ss_pred EEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChhHeeeeccccCCCcccCCc Confidence 888888774322 1222211 1111 00 01223 344555555667899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCc-------hhhHHHHHHHHH---HHHHHhcc---ccccCc Q lcl|Aclame:pro 177 PVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPA-------LKDQASVDRITD---GWNAKFGG---SGNAKK 243 (419) Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~~~~~~g---~~n~g~ 243 (419) .+..++..+.....-.+......+-.+...++|+.+..... ...+...+.+.. .....+.+ .-..|. T Consensus 250 ~lapvl~~l~~l~~y~dael~~a~i~A~~a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pG~ 329 (533) T protein:vir:34 250 VFYSVMEQMKMLDTLQNTQLQSAIVKAMYAATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRLGGAK 329 (533) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeeecCCCcccccccccCCCcccccccccccchhhhhccCcceeeccCce Confidence 99999999988887777777766777777888876532110 001111111111 11111111 113477 Q ss_pred ceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHH-----------HHHhh Q lcl|Aclame:pro 244 VALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFV-----------IYTLL 311 (419) Q Consensus 244 ~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~-----------~~~i~ 311 (419) +..|..|.+++.++.+-...+|.+..+...+.||+++|||...+ |...+.|||+.......+. ..-+. T Consensus 330 i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~ 409 (533) T protein:vir:34 330 VPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFVASRQAS 409 (533) T ss_pred eeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 88899999999888765667789999999999999999998865 5556778887654444333 33334 Q ss_pred HHHHH-HHHHHHhhccC-hh------h-hhhh--hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 312 PWVKR-HEQAKTRDLLL-PS------E-RKQY--FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG 380 (419) Q Consensus 312 P~~~~-i~~~l~~~ll~-~~------~-~~~~--~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g 380 (419) |+... ++.++..-.+. |. . .... .+.+-.-.....|....++....++++|+.|.-|+-++.|.++-+- T Consensus 410 pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D~~ev 489 (533) T protein:vir:34 410 QMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDDYQEI 489 (533) T ss_pred HHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHH Confidence 43333 23333332222 10 0 0011 1222222345558888889999999999999999988899988432 Q ss_pred c----------ceeeeccccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 381 G----------DIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 381 g----------D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) - +++-++....+.. .......+++.+..++.... T Consensus 490 ~~q~a~e~~~~~~~gl~~~~~~~~--~~~s~~~~~~~~~~~~~~~~ 533 (533) T protein:vir:34 490 FAQQVRETMERRAAGLKPPAWAAA--AFESGLRQSTEEEKSDSRAA 533 (533) T ss_pred HHHHHHHHHHHHhcCCCCCCCCCc--CccCCCCCCCCCCcccCCCC Confidence 1 1221222211110 01111111111122222222 No 132 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.52 E-value=2.8e-14 Score=94.86 Aligned_cols=410 Identities=12% Similarity=0.053 Sum_probs=212.5 Q ss_pred CC-ccchhcccccccccccch---------------HHHHhhcCCCcc---------cccccCHHHHhccHHHHHHHHHH Q lcl|Aclame:pro 1 MF-FSRQLLSNLGQTQPGSGG---------------WVSALLGSARSE---------AGQVVTPASALSLTVLQNCVTLL 55 (419) Q Consensus 1 M~-f~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~i~~i 55 (419) |. --.+..+......+.... ....+.+...+. ....-+.+-+..+|.+..+|+.+ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~ 80 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQ 80 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 33 001110000000000000 000000000000 00011123345789999999988 Q ss_pred HHhhccCCeeEeeecCC-------cce-eeccc---hHHHHhhcccc------ccCCHHHHHHHHHHHHHHcCCeeEEEe Q lcl|Aclame:pro 56 AESIAQLPVELYERSGD-------DRK-PATDH---PLYSILKYEPN------PWQTPFEYQEQSQVAVGLRGNSYSFID 118 (419) Q Consensus 56 a~~ia~~~~~~~~~~~~-------~~~-~~~~~---~~~~lL~~~pn------~~~s~~~f~~~~~~~~l~~G~~~~~i~ 118 (419) ...+-.-.|+..-+.+. +.. ..... .+...+.+.++ ..++.+++...++..++..|++++.+. T Consensus 81 ~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 160 (553) T protein:vir:63 81 RDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAE 160 (553) T ss_pred HHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 88777777777543211 100 00011 12233333333 345788899999999999999999876 Q ss_pred ecCC-C--ceEEEEEecCceeEEEEc--------------cceeEEEEee-----c-----------------ccccccc Q lcl|Aclame:pro 119 RDQD-G--VIQGLYPLDNEAVTVMKG--------------PDLKPMYRVA-----G-----------------ADPLPQR 159 (419) Q Consensus 119 ~~~~-G--~~~~l~~~~~~~v~~~~~--------------~~~~~~~~~~-----~-----------------~~~~~~~ 159 (419) +... | .+..|..++|+++....+ ..+...-|+. + ....+.+ T Consensus 161 ~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~ 240 (553) T protein:vir:63 161 WDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRR 240 (553) T ss_pred eccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChh Confidence 5432 3 245778888888743221 2222221211 0 0113344 Q ss_pred eEEE-ecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHH---------- Q lcl|Aclame:pro 160 LVHH-VRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT---------- 228 (419) Q Consensus 160 ~i~~-~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 228 (419) .|+| +.........|+|.+..++..+.......+......+=.+...++|+.+... +...+.+. T Consensus 241 ~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~a~fi~~~~~~-----~~~~~~~~~~~~~~~~~~ 315 (553) T protein:vir:63 241 QVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASYAAAIESELPP-----EFIHSQMSGGSPNADMVG 315 (553) T ss_pred HheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCh-----hhhhhhcccccccccccc Confidence 4444 4455667799999999999999888777777666666677777777765321 11111110 Q ss_pred ------HHHHHHhcc----ccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCccccc Q lcl|Aclame:pro 229 ------DGWNAKFGG----SGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSN 297 (419) Q Consensus 229 ------~~~~~~~~g----~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn 297 (419) +.....+.+ .-..|.+..|..|.+++.++.+--..+|.+..+...+.||+.+|||...+ +...+.|||+ T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS 395 (553) T protein:vir:63 316 IFGKYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSS 395 (553) T ss_pred cccccccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHH Confidence 011111111 11357788899999999888765567789999999999999999998865 5556778887 Q ss_pred HHHHHHHHHHH-----------HhhHHHHH-HHHHHHhhccChhhhh-----------hhh--hhhhhhhhhhccHHHHH Q lcl|Aclame:pro 298 IEHQSLQFVIY-----------TLLPWVKR-HEQAKTRDLLLPSERK-----------QYF--IEYNLAGLLRGDQSSRY 352 (419) Q Consensus 298 ~e~~~~~~~~~-----------~i~P~~~~-i~~~l~~~ll~~~~~~-----------~~~--~~fd~~~~~~~d~~~~~ 352 (419) ..+....+.+. -+.|+... ++.++.+-.+.-..+. ..+ +.+-.-.....|....+ T Consensus 396 ~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~ 475 (553) T protein:vir:63 396 IQAGIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKET 475 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHH Confidence 75554444333 33333322 2222222222100000 001 11111123445788888 Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCCCCCC----------cceeeeccccccc---c--ccccccCCCCCCccccccchhc Q lcl|Aclame:pro 353 AAYAVGRQWGWLSINDIRRLENMPPVKG----------GDIYLSPMNMVDA---S--KPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 353 ~~~~~~~~~g~~T~NE~R~~lGl~p~~g----------gD~~~~~~n~~~~---~--~~~~~~~~~~~~~~~~~~e~~~ 416 (419) +....++++|+.|.-|+-++.|.++-+- .+++=++....+. . ..........+.++++++++ + T Consensus 476 ~A~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e 553 (553) T protein:vir:63 476 QAAVMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQG-E 553 (553) T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCccccc-C Confidence 8899999999999999988889987431 1111112111111 0 11111111112222222222 2 No 133 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=99.49 E-value=2.4e-13 Score=89.78 Aligned_cols=367 Identities=13% Similarity=0.026 Sum_probs=204.8 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc------cccccc-----CHHHHh-ccHHHHHHHHHHHHhhccCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS------EAGQVV-----TPASAL-SLTVLQNCVTLLAESIAQLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~~~-~~~~v~~~i~~ia~~ia~~~~~~~~ 68 (419) |=+.................. .++..+... ..+..+ ..+.++ +.+.|++|++.+...|.+++|.|.. T Consensus 3 ~~~~~~p~~~~~~~~~~~~~~-~~~~~g~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~~~w~V~p 81 (446) T protein:vir:98 3 MEVRNAPTPAIRRRTIYAMEH-LGLATSYLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLNKVGPYQH 81 (446) T ss_pred ccccCCCchhhhhhhhhcccc-chhhcccCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhcCCceecC Confidence 333221111000000000000 111111100 011111 122333 4899999999999999999999964 Q ss_pred ecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC-C-c-eEE----EEEecCceeEEEEc Q lcl|Aclame:pro 69 RSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD-G-V-IQG----LYPLDNEAVTVMKG 141 (419) Q Consensus 69 ~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~-G-~-~~~----l~~~~~~~v~~~~~ 141 (419) ..+ ++ -.-+...|.... . +.....+.+.+.+|.++.++++... | . +.. +..+.|..+....+ T Consensus 82 ~~~----~~-a~~v~~~l~~~~---~---~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~~~~ 150 (446) T protein:vir:98 82 GDK----RI-KKFIDDQLRNRA---K---TWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVMLIAN 150 (446) T ss_pred ccH----HH-HHHHHHHHhhcC---c---hhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccccccccceeeec Confidence 211 11 123444554322 2 2333446788999999999876532 1 1 111 11112222222211 Q ss_pred cceeEE---------EE--------------------e-eccccccc-ceEEEecCCCCCCcccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 142 PDLKPM---------YR--------------------V-AGADPLPQ-RLVHHVRWMSINGYTGLSPVLLHANAIGHAQA 190 (419) Q Consensus 142 ~~~~~~---------~~--------------------~-~~~~~~~~-~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~ 190 (419) .+.... +. . .....++. ..|+|........++|.|.+..+.-....-.. T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK~~ 230 (446) T protein:vir:98 151 DNGRIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFKRA 230 (446) T ss_pred cCCccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHHHHHh Confidence 111100 00 0 00112333 44566555556668999999999999999999 Q ss_pred HHHHHHHHHHccCCCceEEEeCCCCCchhh-----HHHHHHHHHHHHHHhcc-ccccCcce---ecCCCceeeecCcChh Q lcl|Aclame:pro 191 IQQYAGKSFMNGTALSGVIERPTDAPALKD-----QASVDRITDGWNAKFGG-SGNAKKVA---LLQEGMKFKPLSMTNV 261 (419) Q Consensus 191 ~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g-~~n~g~~~---vl~~g~~~~~l~~~~~ 261 (419) ..+....+.+.-|.|--+.+.+...+.... .+..+...+.+.+.... ..+++.++ ++++|+++.-++.... T Consensus 231 ~~~~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~~~ 310 (446) T protein:vir:98 231 FRDMMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTGNN 310 (446) T ss_pred hHHHHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccccC Confidence 999999999999999999998765443211 11222222333333322 22333333 2388888876654322 Q ss_pred -hHHHHHHHHHHHHHHHHHhcCCHHHcccccCccccc-HHHHHHHHHHHHhhHHHHHHHHHHHhhccChhhh----h-h- Q lcl|Aclame:pro 262 -DAALIDALRLSALDIARIYKIPAHMVNELERATFSN-IEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER----K-Q- 333 (419) Q Consensus 262 -d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn-~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~----~-~- 333 (419) ...|.+..++..++|+.+.....-.+|...+.++|+ ..+.......+.+.-.+..|++.+|+.|+.+.-. . . T Consensus 311 ~~~~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~~~~ 390 (446) T protein:vir:98 311 FSDSFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQLELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDPALY 390 (446) T ss_pred ChhhHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc Confidence 235888899999999999887665555443322322 2334445566777888999999999988654321 0 0 Q ss_pred ------hhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCH---HHHHHHhCCCCCC-Cc Q lcl|Aclame:pro 334 ------YFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSI---NDIRRLENMPPVK-GG 381 (419) Q Consensus 334 ------~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~---NE~R~~lGl~p~~-gg 381 (419) .++.|+.. ...|.+..++...+++..|..++ +.+|+.+|+|+-+ .. T Consensus 391 ~~~~~~~~~~~~~~--e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 391 PLASNTGYITRLPG--RATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred ccccccccceeccC--ChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 11233332 35688899999999999998765 4599999998753 22 No 134 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.48 E-value=4.6e-14 Score=93.69 Aligned_cols=405 Identities=12% Similarity=0.031 Sum_probs=198.6 Q ss_pred CCccc---------------------hhcccccccccccchHHHHhhc--CCCcccccc---------cCHHHHhccHHH Q lcl|Aclame:pro 1 MFFSR---------------------QLLSNLGQTQPGSGGWVSALLG--SARSEAGQV---------VTPASALSLTVL 48 (419) Q Consensus 1 M~f~~---------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~v 48 (419) |+-.. .+.-..+..+|....-...-+. +....+..- -.-....+.|.+ T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~ey 125 (698) T protein:vir:10 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (698) T ss_pred hcccccccccccccccCCCccccccccceeccccCCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccch Confidence 44211 1110111111111111111111 000000000 012334678899 Q ss_pred HHHHHHHHHhhccCCeeEeeecC-------------CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeE Q lcl|Aclame:pro 49 QNCVTLLAESIAQLPVELYERSG-------------DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYS 115 (419) Q Consensus 49 ~~~i~~ia~~ia~~~~~~~~~~~-------------~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~ 115 (419) ++|+..|++....- |.-..... ++.... +..-...|...-... .-.+-+...+.+--++|-+.+ T Consensus 126 r~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~-d~dqi~~L~~e~erl-~V~~~l~eai~~aRlfGGa~~ 202 (698) T protein:vir:10 126 RAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTS-DGDQLKQINDEIERL-RIRDAVRTTVIHDQAFGRAHP 202 (698) T ss_pred hhHHHHHHHHhhcc-cceeccccchhhhhhcccccccccccc-cHHHHHHHHHHHHHH-HHHHHHHHHHHhcccccceEE Confidence 99999999987655 52211110 000000 112223343333222 233333344445556666654 Q ss_pred EEe--e---------------cCCCceEEEEEecCceeEEEEcc--------cee-EEEEeecccccccceEEEecCCCC Q lcl|Aclame:pro 116 FID--R---------------DQDGVIQGLYPLDNEAVTVMKGP--------DLK-PMYRVAGADPLPQRLVHHVRWMSI 169 (419) Q Consensus 116 ~i~--~---------------~~~G~~~~l~~~~~~~v~~~~~~--------~~~-~~~~~~~~~~~~~~~i~~~~~~~~ 169 (419) ++. . ...|....|.+++|.++++.... .+. ..|++.+++ +....++.+...+. T Consensus 203 ~i~I~gdd~~l~~PL~~~~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~~-IH~SRL~~~vg~pv 281 (698) T protein:vir:10 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGSE-VHATRLHTIVSRPV 281 (698) T ss_pred EEEeecCccccccccccccccccCccceeeeeecccccccchhhhccchhhccCCCceEEEecce-ecceeEEEecCCCc Confidence 442 2 12355667888898888875321 111 233444443 44444444444322 Q ss_pred -------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccC Q lcl|Aclame:pro 170 -------NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAK 242 (419) Q Consensus 170 -------~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g 242 (419) ..+.|+|..+.+...+.-..........+...-........+-..+.....++... +-.+-+++++ |. T Consensus 282 pd~LKp~y~f~G~Sv~q~~~e~V~~~~rT~~~v~~Li~~~~~~~l~~dla~aL~~g~~~~l~~--R~eli~~~Rs--n~- 356 (698) T protein:vir:10 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALTPGANVDLSM--RAELINRYRD--NR- 356 (698) T ss_pred hhhhcchhccCCccHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHhcCChhhHHHHH--HHHHHHHhcC--cc- Confidence 23569999999999998887766666665543222221111111111111112112 2244455554 33 Q ss_pred cceecC-CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHHH-------HhhHH Q lcl|Aclame:pro 243 KVALLQ-EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIY-------TLLPW 313 (419) Q Consensus 243 ~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~~-------~i~P~ 313 (419) ++++++ +..+|.+.+.+...++ +........||.+-+||...| |..-.+-.++.|.-.++||.. -|.|. T Consensus 357 G~~llDk~~Eefeq~st~lSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~ 434 (698) T protein:vir:10 357 NILFLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (698) T ss_pred ceEEEecCCcceEEEecCcCCHH--HHHHHHHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHH Confidence 356667 5789998887666554 456667789999999998755 443333335556566666654 57788 Q ss_pred HHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHH-------HHHhCCCcCHHHHHHHhCCCCC-------C Q lcl|Aclame:pro 314 VKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYA-------VGRQWGWLSINDIRRLENMPPV-------K 379 (419) Q Consensus 314 ~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~-------~~~~~g~~T~NE~R~~lGl~p~-------~ 379 (419) ++++-+-+-+..|.... ..+.|.++.|.+++.++++++-. .++..|+++++|+|.+|.-+|- + T Consensus 435 L~rl~~ii~rS~~G~id---p~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d 511 (698) T protein:vir:10 435 MNDVIVMIQLSLFGAVD---PSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (698) T ss_pred HHHHHHHHHHHhcCCCC---CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccC Confidence 88877777666665433 24666777888888888777644 4678899999999999866542 1 Q ss_pred Ccceeeecc-ccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 380 GGDIYLSPM-NMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 380 ggD~~~~~~-n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) --|.+..|. |.++.....-.....++++..+...++..-. T Consensus 512 ~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (698) T protein:vir:10 512 ANDDPGAPADDDIDGVLTYVQRMAEGGDTGAPTAPGGARAG 552 (698) T ss_pred CcccCCCCCCCcchHHHhhhcCCcCCCCcccccccccccCC Confidence 123333322 1111110000001111111111111111110 No 135 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.44 E-value=1.3e-13 Score=91.26 Aligned_cols=404 Identities=12% Similarity=0.050 Sum_probs=199.3 Q ss_pred CCccchhcccccccccccchHHHHhhc--CCCccc----------ccccCHHHHhccHHHHHHHHHHHHhhccCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLG--SARSEA----------GQVVTPASALSLTVLQNCVTLLAESIAQLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~ 68 (419) -.+-+.+.-..+..+|.........++ +....+ +.+ .-....+.|.+++|+..|++....- |.-.. T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~-~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~ 143 (694) T protein:vir:10 66 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFP-TLVLLAQLPEYRAMHEVLADECIRT-WGEAI 143 (694) T ss_pred hhhhhhccccccCCCccccchhhhhhccCcccccchhhhhccCcchHH-HHHHHhhccchhhHHHHHHHHhhcc-cceec Confidence 111111111111111111111111111 000000 111 1234567899999999999987655 52211 Q ss_pred ecC-------------CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEe--e-------------- Q lcl|Aclame:pro 69 RSG-------------DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFID--R-------------- 119 (419) Q Consensus 69 ~~~-------------~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~--~-------------- 119 (419) ... ++.... +..-...|...-... .-.+-+...+.+--++|-+.+++. . T Consensus 144 ~~~~e~~~~~g~~~~~~~~~~~-d~dqi~~L~~e~erl-~V~~~l~eaik~aRlfGGa~~~i~I~gdd~~l~~PL~~~~~ 221 (694) T protein:vir:10 144 GGTKEKADTSGLAAGGNAASTS-DGDQLKQINDEIERL-RIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPY 221 (694) T ss_pred cccchhhhhhcccccccccccc-cHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccceEEEEEeecCccccccccccccc Confidence 110 000000 112223444333222 333334444555566676655543 2 Q ss_pred -cCCCceEEEEEecCceeEEEEcc--------cee-EEEEeecccccccceEEEecCCCC-------CCcccccHHHHHH Q lcl|Aclame:pro 120 -DQDGVIQGLYPLDNEAVTVMKGP--------DLK-PMYRVAGADPLPQRLVHHVRWMSI-------NGYTGLSPVLLHA 182 (419) Q Consensus 120 -~~~G~~~~l~~~~~~~v~~~~~~--------~~~-~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~G~s~~~~~~ 182 (419) ...|....|.+++|.++++.... .+. ..|++.+++ +....++.+...+. ..+.|+|..+.+. T Consensus 222 ~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~~-IH~SRL~~f~g~plPd~LKp~y~~~G~Sv~q~~~ 300 (694) T protein:vir:10 222 TVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTE-VHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAM 300 (694) T ss_pred cccCcceeeeEeecccccccchhhhccchhhccCCCceEEEeceE-EeeeeEEEecCCCchhhhhcccccCcccHHHHHH Confidence 12455677888899888875421 111 233344443 33344443433332 2357999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecCcChh Q lcl|Aclame:pro 183 NAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMTNV 261 (419) Q Consensus 183 ~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~ 261 (419) ..+............+...-.........-..+.+....+... +-.+-+++++. . ++++++ +..+|.+.+.+.. T Consensus 301 e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~--R~eli~~~Rsn--~-G~~llDk~~Eefeq~stslS 375 (694) T protein:vir:10 301 PYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSM--RAELINRYRDN--R-NILFLDKATEEFFQFNTPLS 375 (694) T ss_pred HHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHH--HHHHHHHhcCc--c-ceEEEecCCcceEEEecccC Confidence 9988887776666666544222211111101111111111122 23444566543 3 366667 5788998887666 Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHHH-------HhhHHHHHHHHHHHhhccChhhhhh Q lcl|Aclame:pro 262 DAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIY-------TLLPWVKRHEQAKTRDLLLPSERKQ 333 (419) Q Consensus 262 d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~~-------~i~P~~~~i~~~l~~~ll~~~~~~~ 333 (419) .++ +........||.+-+||...| |..-.+-.++.|.-.++||.. -|.|.++++-+-+-+..|...+ T Consensus 376 GLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~id--- 450 (694) T protein:vir:10 376 GLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD--- 450 (694) T ss_pred CHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--- Confidence 554 455667789999999998755 443333335556566666554 5778888877777666665433 Q ss_pred hhhhhhhhhhhhccHHHHHHHH-------HHHHhCCCcCHHHHHHHhCCCC-------CCCcceeeeccccc-c------ Q lcl|Aclame:pro 334 YFIEYNLAGLLRGDQSSRYAAY-------AVGRQWGWLSINDIRRLENMPP-------VKGGDIYLSPMNMV-D------ 392 (419) Q Consensus 334 ~~~~fd~~~~~~~d~~~~~~~~-------~~~~~~g~~T~NE~R~~lGl~p-------~~ggD~~~~~~n~~-~------ 392 (419) ..+.|.++.+.+++.++++++. ..++..|+++++|+|.+|.-+| ++-.|.+-+|.... + T Consensus 451 p~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~ 530 (694) T protein:vir:10 451 PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYV 530 (694) T ss_pred CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhh Confidence 2466677788888888777764 4467899999999999987765 22344444333221 0 Q ss_pred --ccccccc-cCCCCCCccccccchhccc----------------C Q lcl|Aclame:pro 393 --ASKPQPI-PMGKTEPTKAALDEIGRIL----------------S 419 (419) Q Consensus 393 --~~~~~~~-~~~~~~~~~~~~~e~~~~~----------------~ 419 (419) +....+. +.++..++.-..--+.++. | T Consensus 531 ~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~~~~ 576 (694) T protein:vir:10 531 QRLAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRA 576 (694) T ss_pred cCcccccccCCCCcccccccCCCcccccccccCccccCCCCcccee Confidence 0000000 0000000000000000111 1 No 136 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.44 E-value=2.2e-13 Score=89.93 Aligned_cols=405 Identities=11% Similarity=0.024 Sum_probs=199.2 Q ss_pred CCccc---------------------hhcccccccccccchHHHHhhc--CCCcccccc---------cCHHHHhccHHH Q lcl|Aclame:pro 1 MFFSR---------------------QLLSNLGQTQPGSGGWVSALLG--SARSEAGQV---------VTPASALSLTVL 48 (419) Q Consensus 1 M~f~~---------------------~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---------~~~~~~~~~~~v 48 (419) |+-.. .+.-..+..+|....-...-+. +....+..- -.-....+.|.+ T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~ey 125 (695) T protein:vir:78 46 MGRRGALNALDAAPVAEPSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEY 125 (695) T ss_pred hcccccccccccccccCCCcccccceeceeccccCCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccch Confidence 44211 1110011111111111111111 000000000 012344678899 Q ss_pred HHHHHHHHHhhccCCeeEeeecC-------------CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeE Q lcl|Aclame:pro 49 QNCVTLLAESIAQLPVELYERSG-------------DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYS 115 (419) Q Consensus 49 ~~~i~~ia~~ia~~~~~~~~~~~-------------~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~ 115 (419) ++|+..|++....- |.-..... ++.... +..-...|...-... .-.+-+...+.+--++|-+.+ T Consensus 126 r~~~~~ia~e~~R~-w~~~~~~~~e~~~~~g~~~~~~~~~~~-d~dqi~~L~~e~erL-~V~~~l~eaik~aRlfGGa~~ 202 (695) T protein:vir:78 126 RAMHEVLADECIRT-WGEAIGGTKEKADTSGLAAGGNAASTS-DGDQLKQINDEIERL-RIRDAVRTTVIHDQAFGRAHP 202 (695) T ss_pred hhHHHHHHHHhhcc-cceeccccchhhhhhcccccccccccc-cHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccceEE Confidence 99999999987655 52211110 000000 112223444333222 333334444555566676655 Q ss_pred EEee-----------------cCCCceEEEEEecCceeEEEEcc--------cee-EEEEeecccccccceEEEecCCCC Q lcl|Aclame:pro 116 FIDR-----------------DQDGVIQGLYPLDNEAVTVMKGP--------DLK-PMYRVAGADPLPQRLVHHVRWMSI 169 (419) Q Consensus 116 ~i~~-----------------~~~G~~~~l~~~~~~~v~~~~~~--------~~~-~~~~~~~~~~~~~~~i~~~~~~~~ 169 (419) ++.- ...|....|.+++|.++++.... .+. ..|++.+++ +....++.+...+. T Consensus 203 ~i~i~gdd~~l~~PL~~~~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~k-IH~SRL~~f~g~pl 281 (695) T protein:vir:78 203 YFKIKGDDQIMDTPLVPRPYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTE-VHATRLHTIVSRPV 281 (695) T ss_pred EEEeccCccccccccccccccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEeceE-EeeeeEEEecCCCc Confidence 4422 12455677888899888875421 111 233344443 33344443433332 Q ss_pred -------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccC Q lcl|Aclame:pro 170 -------NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAK 242 (419) Q Consensus 170 -------~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g 242 (419) ..+.|+|..+.+...+............+...-.........-..+.+....+... +-.+-+++++. . T Consensus 282 Pd~LKp~y~~~GiSv~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~--R~eli~~~Rsn--~- 356 (695) T protein:vir:78 282 GDMLKPTYSFAGISMTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSM--RAELINRYRDN--R- 356 (695) T ss_pred hhhhhcccccCcccHHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHH--HHHHHHHhcCc--c- Confidence 23579999999999988887777666666544222211111101111111112122 23444566543 3 Q ss_pred cceecC-CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHHH-------HhhHH Q lcl|Aclame:pro 243 KVALLQ-EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIY-------TLLPW 313 (419) Q Consensus 243 ~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~~-------~i~P~ 313 (419) ++++++ +..+|.+.+.+...++ +........||.+-+||...| |..-.+-.++.|.-.++||.. -+.|. T Consensus 357 G~~llDk~~Eefeq~stslSGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~ 434 (695) T protein:vir:78 357 NILFLDKATEEFFQFNTPLSGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQL 434 (695) T ss_pred ceEEEecCCcceEEEecccCCHH--HHHHHHHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 366667 5788998887666554 455667789999999998755 443333335556566666554 57788 Q ss_pred HHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHH-------HHHHhCCCcCHHHHHHHhCCCC-------CC Q lcl|Aclame:pro 314 VKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAY-------AVGRQWGWLSINDIRRLENMPP-------VK 379 (419) Q Consensus 314 ~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~-------~~~~~~g~~T~NE~R~~lGl~p-------~~ 379 (419) ++++-+-+-+..|...+ ..+.|.++.+.+++.++++++. ..++..|+++++|+|.+|.-+| ++ T Consensus 435 L~rl~~ii~rS~~G~id---pdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D 511 (695) T protein:vir:78 435 MNDVIVMIQLSLFGAVD---PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLD 511 (695) T ss_pred HHHHHHHHHHHhcCCCC---CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccc Confidence 88877777666665433 2466677788888888777764 4467899999999999987765 23 Q ss_pred Ccceeeeccccc-c--------cccc---ccccCCCCCCcccc--ccchhcc------------cC Q lcl|Aclame:pro 380 GGDIYLSPMNMV-D--------ASKP---QPIPMGKTEPTKAA--LDEIGRI------------LS 419 (419) Q Consensus 380 ggD~~~~~~n~~-~--------~~~~---~~~~~~~~~~~~~~--~~e~~~~------------~~ 419 (419) -.|.+-+|.... + +... ++......+....+ .++..+. .| T Consensus 512 ~~d~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ag~~~~~~~a 577 (695) T protein:vir:78 512 ANDDPGVPADDDIDGVLTYVQRLAEGGDTGAPGGARAGATAPPTVANVNANVKPREAGAQDAAMRA 577 (695) T ss_pred cccCCCcCccchhhhhHhhhcCcccccccCCCCCCCCCCCCCCceeeeeccccccccCCCCcccce Confidence 344444433221 0 0000 00000000000000 0000110 00 No 137 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.42 E-value=2.8e-13 Score=89.37 Aligned_cols=404 Identities=12% Similarity=0.044 Sum_probs=198.3 Q ss_pred CCccchhcccccccccccchHHHHhhc--CCCccc----------ccccCHHHHhccHHHHHHHHHHHHhhccCCeeEee Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLG--SARSEA----------GQVVTPASALSLTVLQNCVTLLAESIAQLPVELYE 68 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----------~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~ 68 (419) ..+-+.+.-..+..+|....-...-+. +....+ +. -.-....+.|.+++|+..|++....- |.-.. T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy-~~la~laQ~~eyr~~~~~ia~e~~R~-w~~~~ 144 (695) T protein:vir:36 67 LRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGF-PTLVLLAQLPEYRAMHEVLADECIRT-WGEAI 144 (695) T ss_pred cccceeceecccccCccccchhhhhhcccccccccchhhhccCcchH-HHHHHHhhccchhhHHHHHHHHhhcc-cceec Confidence 111111111111111111111111111 000000 10 01234567899999999999987655 52211 Q ss_pred ecC-------------CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEee---------------- Q lcl|Aclame:pro 69 RSG-------------DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR---------------- 119 (419) Q Consensus 69 ~~~-------------~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~---------------- 119 (419) ... ++.... +..-...|...-. ...-.+-+...+.+--++|-+.+++.- T Consensus 145 ~~~~e~~~~~g~~~~~~~~~~~-d~dqik~L~~e~e-rL~V~~~l~eaik~aRlfGGa~~~i~i~gdd~~l~~PL~~~~~ 222 (695) T protein:vir:36 145 GGTKEKADTSGLAAGGNAASTS-DGDQLKQINDEIE-RLRIRDAVRTTVIHDQAFGRAHPYFKIKGDDQIMDTPLVPRPY 222 (695) T ss_pred ccchhhhhhccccccccccccC-chHHHHHHHHHHH-HHHHHHHHHHHHHhhccccceEEEEEeccCccccccccccccc Confidence 110 000000 1122233433222 223333344445555666766555422 Q ss_pred -cCCCceEEEEEecCceeEEEEcc--------cee-EEEEeecccccccceEEEecCCCC-------CCcccccHHHHHH Q lcl|Aclame:pro 120 -DQDGVIQGLYPLDNEAVTVMKGP--------DLK-PMYRVAGADPLPQRLVHHVRWMSI-------NGYTGLSPVLLHA 182 (419) Q Consensus 120 -~~~G~~~~l~~~~~~~v~~~~~~--------~~~-~~~~~~~~~~~~~~~i~~~~~~~~-------~~~~G~s~~~~~~ 182 (419) ...|....|.+++|.++++.... .+. ..|++.+++ +....++.+...+. ..+.|+|..+.+. T Consensus 223 ~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~G~k-IH~SRL~~f~g~plPd~LKp~y~~~GiSv~q~~~ 301 (695) T protein:vir:36 223 TVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMIGTE-VHATRLHTIVSRPVGDMLKPTYSFAGISMTQLAM 301 (695) T ss_pred cccCcceeeeEeecccccccchhhhccchhhccCCCceEEEeceE-EeeeeEEEecCCCchhhhhcccccCcccHHHHHH Confidence 12455677888899888875421 111 233344443 33344443433332 2357999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecCcChh Q lcl|Aclame:pro 183 NAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMTNV 261 (419) Q Consensus 183 ~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~ 261 (419) ..+............+...-.........-..+.+....+... +-.+-+++++. . ++++++ +..+|.+.+.+.. T Consensus 302 e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~aL~~g~~~~l~~--R~eli~~~Rsn--~-G~~llDk~~Eefeq~stslS 376 (695) T protein:vir:36 302 PYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSM--RAELINRYRDN--R-NILFLDKATEEFFQFNTPLS 376 (695) T ss_pred HHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHhhcChhHHHHHH--HHHHHHHhcCc--c-ceEEEecCCcceEEEecccC Confidence 9988877766666666543222211111001111111112122 23444566543 3 366667 5788998887666 Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHHHHHHHHHHH-------HhhHHHHHHHHHHHhhccChhhhhh Q lcl|Aclame:pro 262 DAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIEHQSLQFVIY-------TLLPWVKRHEQAKTRDLLLPSERKQ 333 (419) Q Consensus 262 d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e~~~~~~~~~-------~i~P~~~~i~~~l~~~ll~~~~~~~ 333 (419) .++ +......+.||.+-+||...| |..-.+-.++.|.-.++||.. -|.|.++++-+-+-+..|...+ T Consensus 377 GLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~id--- 451 (695) T protein:vir:36 377 GLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAVD--- 451 (695) T ss_pred CHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--- Confidence 554 455667789999999998755 443333335556566666554 5778888877777666665433 Q ss_pred hhhhhhhhhhhhccHHHHHHHH-------HHHHhCCCcCHHHHHHHhCCCCC-------CCcceeeeccccc-c------ Q lcl|Aclame:pro 334 YFIEYNLAGLLRGDQSSRYAAY-------AVGRQWGWLSINDIRRLENMPPV-------KGGDIYLSPMNMV-D------ 392 (419) Q Consensus 334 ~~~~fd~~~~~~~d~~~~~~~~-------~~~~~~g~~T~NE~R~~lGl~p~-------~ggD~~~~~~n~~-~------ 392 (419) ..+.|.++.+.+++.++++++. ..++..|+++++|+|.+|.-+|- +-.|.+-+|.... + T Consensus 452 pdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~~~~~ 531 (695) T protein:vir:36 452 PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGVLTYV 531 (695) T ss_pred CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhhHhhh Confidence 2466677788888888777764 44678999999999999877652 2344444333221 0 Q ss_pred --ccccccc-cCCCCCCccccccchhcc----------------cC Q lcl|Aclame:pro 393 --ASKPQPI-PMGKTEPTKAALDEIGRI----------------LS 419 (419) Q Consensus 393 --~~~~~~~-~~~~~~~~~~~~~e~~~~----------------~~ 419 (419) +....+. +.++..++.-..--+.++ .| T Consensus 532 ~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~ag~~~~~~~a 577 (695) T protein:vir:36 532 QRLAEGGDTGAPGGARAGATAPPTVANVNANVNPREAGAQDAAMRA 577 (695) T ss_pred cCcccccccCCCCcccccccCCCcccccccccCccccCCCCcccee Confidence 0000000 000000000000000000 11 No 138 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=99.40 E-value=8.2e-14 Score=92.34 Aligned_cols=416 Identities=13% Similarity=0.050 Sum_probs=238.4 Q ss_pred CC---ccchhcccccccccccch-------------HHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCe Q lcl|Aclame:pro 1 MF---FSRQLLSNLGQTQPGSGG-------------WVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPV 64 (419) Q Consensus 1 M~---f~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~ 64 (419) |. -+|..++.++...-..+. -.+--.|.+...++..=-.+-+-..|.++-.+..|++.++.+.+ T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQPLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCRL 80 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhccccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 54 223444444332111110 00000111111111111122233458888999999999999999 Q ss_pred eEeeecCC-----cceeecc---chHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEe-ecCCCc----------e Q lcl|Aclame:pro 65 ELYERSGD-----DRKPATD---HPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFID-RDQDGV----------I 125 (419) Q Consensus 65 ~~~~~~~~-----~~~~~~~---~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~-~~~~G~----------~ 125 (419) ..-+.+.| +..+... .....+...=+...+...++++.+...+-.-|++|+.+. +..+|- . T Consensus 81 ~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~~ 160 (631) T protein:vir:10 81 VASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRTR 160 (631) T ss_pred EeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCcccccccc Confidence 99887755 2222111 223333443455678889999999999999999998873 333221 3 Q ss_pred EEEEEecCceeEEEEcccee-EEEEeecc-cccccceEEE--ecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHc Q lcl|Aclame:pro 126 QGLYPLDNEAVTVMKGPDLK-PMYRVAGA-DPLPQRLVHH--VRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMN 201 (419) Q Consensus 126 ~~l~~~~~~~v~~~~~~~~~-~~~~~~~~-~~~~~~~i~~--~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~n 201 (419) .+++++....|+.....++. +....... .+...-++++ .+++|.....-.||+.+++..+.-..-..+...+..+. T Consensus 161 ~~W~~vt~~ei~~~~~g~g~~v~lp~g~~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakS 240 (631) T protein:vir:10 161 QEWYAVSKEEIKKSNKGSGTNIVLPTGEEHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTIANASKS 240 (631) T ss_pred cceeeccHHHHhcccCcccceeecCCCCccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHH Confidence 46777777777644333322 22222221 1222223433 34556666778899999999999998888888888888 Q ss_pred cCCCceEEEeCCCCCch-----------------hhHHHHHHHHHHHH----HHhccccccCc--ceecC------CCce Q lcl|Aclame:pro 202 GTALSGVIERPTDAPAL-----------------KDQASVDRITDGWN----AKFGGSGNAKK--VALLQ------EGMK 252 (419) Q Consensus 202 g~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~----~~~~g~~n~g~--~~vl~------~g~~ 252 (419) ...-.|++.+|+...-. ...-..+.|.+.+. ..+...+.+.. ++++. ++++ T Consensus 241 Rl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E~i~~i~ 320 (631) T protein:vir:10 241 RLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGEQIKDVK 320 (631) T ss_pred HHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCee Confidence 88899999887654321 11224455555554 34443332222 22222 2233 Q ss_pred eeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHH-cccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh- Q lcl|Aclame:pro 253 FKPLSMTNVDAALIDALRLSALDIARIYKIPAHM-VNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE- 330 (419) Q Consensus 253 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~-~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~- 330 (419) ...+. +..+---..+|+..+.+||...-|||.. +|...++|.-+.-+....-++--|.|.+.-||+++++.+|.+.. T Consensus 321 hlkf~-~ei~e~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P~l~lic~AlT~q~Lrp~Le 399 (631) T protein:vir:10 321 HIRFD-NEITEVAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAPVMEIFCQALTDQILRVTLA 399 (631) T ss_pred EEeec-CchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHH Confidence 33333 3334446789999999999999999985 56556777766666666677888999999999999999987642 Q ss_pred --h---hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc------------------eeeec Q lcl|Aclame:pro 331 --R---KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD------------------IYLSP 387 (419) Q Consensus 331 --~---~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD------------------~~~~~ 387 (419) + ..|-++||.+.|... -.+.+-+..++..|.||-...|+.+||.-.++-| .-+.| T Consensus 400 ~eGvDp~kYvvW~DaS~Lt~d--Pdr~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~~av~~dpaLip 477 (631) T protein:vir:10 400 REGIDPSKYVVWYDPSQLTID--PDKSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQDAVSKDPTLIP 477 (631) T ss_pred HhCCCHHHhEeeecCcccccC--CCCcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHHHHhhcccCcch Confidence 2 356678999876532 2334445568899999999999999998654422 11111 Q ss_pred ------cc-cccccccccccCCCCCCcccc-------------------ccchhcccC Q lcl|Aclame:pro 388 ------MN-MVDASKPQPIPMGKTEPTKAA-------------------LDEIGRILS 419 (419) Q Consensus 388 ------~n-~~~~~~~~~~~~~~~~~~~~~-------------------~~e~~~~~~ 419 (419) .+ +.....+.+.....+++.++. ..+...+.+ T Consensus 478 ~lApl~~~~~~~v~~P~~~a~~~~g~ed~~~~~~~~~g~~epdt~d~~p~~~~a~~~~ 535 (631) T protein:vir:10 478 MLAPLIAGVLKQIEFPQQQAIDSGGNEDTSDADDLDDGEQEPDTEDDDDGTQKAGLET 535 (631) T ss_pred hhHHHHHHHhhhccCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCccccccchH Confidence 01 111111111111100000000 000000111 No 139 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.35 E-value=1.4e-13 Score=91.12 Aligned_cols=374 Identities=12% Similarity=0.024 Sum_probs=165.9 Q ss_pred CCccchhcc--cccc---ccccc-chHHHHhhcCCCcc--------cccccCHH---H-HhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MFFSRQLLS--NLGQ---TQPGS-GGWVSALLGSARSE--------AGQVVTPA---S-ALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~f~~~~~~--~~~~---~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~---~-~~~~~~v~~~i~~ia~~ia~~ 62 (419) |- +++-. +... +.... +++.....|.++.. ....++.+ . |-.+..+..+|+.++...-.- T Consensus 1 ~~--~~~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~~~~~~l~~~Yr~~~ia~~iVd~~~d~~~~~ 78 (449) T protein:vir:10 1 MT--DKLTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYENLYSLYRRGGIAHGAVEKLVGKCWQT 78 (449) T ss_pred Cc--hhhHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCcccCCHHHHHHHHhcCchhHHHHHhhhhhhhhc Confidence 33 00000 0000 00000 11111111111111 01112222 2 334777889999999765211 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHH---HHHHHHHcCCeeEEEe-ecC---------CCceEEEE Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQ---SQVAVGLRGNSYSFID-RDQ---------DGVIQGLY 129 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~---~~~~~l~~G~~~~~i~-~~~---------~G~~~~l~ 129 (419) -..+....+. ........+...+. +- ....+|.. ....-.++|-+++++. ++. .+.+..+. T Consensus 79 ~~~i~~g~~~-~~~~~~~~~e~~~~-~l----~~~~~~~~l~ea~~~~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~ 152 (449) T protein:vir:10 79 NPEIIEGDDA-DDSEDETSWEKKSK-QV----FTNRLWRSFAEADRRRLVGRYAGILLHIRDEKDWNLPATKGRGLQKVS 152 (449) T ss_pred CcccccCccc-cchhhhHHHHHHHH-HH----HHHHHHHHHHHHHHhhhccCcEEEEEEecCCCCCCcccccCcceeeEE Confidence 1112111111 11111111222221 01 11233333 2333466787777764 232 12455566 Q ss_pred EecCceeEEEE-ccc------eeEEEE-eec--------ccccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 130 PLDNEAVTVMK-GPD------LKPMYR-VAG--------ADPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQ- 192 (419) Q Consensus 130 ~~~~~~v~~~~-~~~------~~~~~~-~~~--------~~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~- 192 (419) |+....+++.. +.+ +...+| +.+ ...+.+..++++...+ ..|.|.+..+...+.....+. T Consensus 153 v~~~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~~---~~g~~~L~~~yn~l~~~~~~~~ 229 (449) T protein:vir:10 153 VSWAGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDYS---EDAIGFLEPAYNAFVSLEKVEG 229 (449) T ss_pred eeccccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCCC---CCChhHHHHHHHHhhhHHHhhh Confidence 65544443321 111 222222 111 1124445555543333 336777777766543222221 Q ss_pred HHHHHHHHcc-----------CCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChh Q lcl|Aclame:pro 193 QYAGKSFMNG-----------TALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNV 261 (419) Q Consensus 193 ~~~~~~~~ng-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~ 261 (419) .+...++++. ....++....+ ...++..+++.+......++.+ .+.++.+.+++.++.++. T Consensus 230 ~~a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~----~~~e~~~~~~~~~~~~~~~~~~----~~~i~~~~d~~~~~~~~s 301 (449) T protein:vir:10 230 GSGESFLKNAARQLNVNFEKEIDFTNLASLYG----VSIDELQDKFNEVAGEINRGND----VLMTTQGATVTPLVTSVA 301 (449) T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhHHhh----CCchHHHHHHHHHHHHHhccch----heeecCCcceEEEecccC Confidence 1111111111 11111111111 1123334444444444444432 345567778998888877 Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHH------HhhHHHHHHHHHHHhhccChhhhhhhh Q lcl|Aclame:pro 262 DAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIY------TLLPWVKRHEQAKTRDLLLPSERKQYF 335 (419) Q Consensus 262 d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~------~i~P~~~~i~~~l~~~ll~~~~~~~~~ 335 (419) +.. +.......+||++-|||...|-+.+.+..+..++ .+.|+.. -+.|.++.+-+-|-+.-+.... .. T Consensus 302 gl~--d~l~~~~q~iaaa~~IP~t~L~Gqsp~glnst~D-~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~~~---~d 375 (449) T protein:vir:10 302 DPT--ATYNVNLQTAAAGVDIPTRILIGNQQAERSSTED-QKYFNARCQSRRVDLSFEIEDFCDKLIELKIIDAV---AK 375 (449) T ss_pred Chh--HHHHHHHHHHHHHhCCCeeeeeccCccccccchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCCC---Cc Confidence 653 4566777889999999988665544443333343 3444432 2556666666555444333221 24 Q ss_pred hhhhhhhhhhccHHHHHHHHH-------HHHhCC---CcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCC Q lcl|Aclame:pro 336 IEYNLAGLLRGDQSSRYAAYA-------VGRQWG---WLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTE 405 (419) Q Consensus 336 ~~fd~~~~~~~d~~~~~~~~~-------~~~~~g---~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~ 405 (419) +.|.++.+..++.++++++.. +++.+| +++.+|+|+.+|++|..+.+ + ........ +.+ T Consensus 376 ~~i~f~pL~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~~~-~---------~~e~~de~-~~~ 444 (449) T protein:vir:10 376 KAVIWDDLNEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDEEP-L---------GEEDGDEE-DKA 444 (449) T ss_pred eeEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCCCC-C---------CCCCCccc-ccc Confidence 677777888999888866544 455565 89999999999999864321 1 11111111 111 Q ss_pred Ccccc Q lcl|Aclame:pro 406 PTKAA 410 (419) Q Consensus 406 ~~~~~ 410 (419) ...++ T Consensus 445 ~d~~a 449 (449) T protein:vir:10 445 TDSAA 449 (449) T ss_pred CCcCC Confidence 11111 No 140 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=99.29 E-value=1.4e-12 Score=85.55 Aligned_cols=413 Identities=10% Similarity=-0.009 Sum_probs=230.4 Q ss_pred CC--ccchhcccccccccccch---------------HHHHhhcCCCc-ccccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGSGG---------------WVSALLGSARS-EAGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |. -+|..++.|+.-.+..+- ......++..+ |+.. -.+-+-..|.++-.+..|++.++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~e--AW~~~d~v~Elry~vgW~~~s~Sr~ 78 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQED--AWKAYDAVGELRYYVGWRSSSASRV 78 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHH--HHHHHHhhhhHHHHhhhhhhhhcee Confidence 65 233344433321111100 00010111111 1111 1222233788889999999999999 Q ss_pred CeeEeeecCCcce---eec-cch----HHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce-------EE Q lcl|Aclame:pro 63 PVELYERSGDDRK---PAT-DHP----LYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI-------QG 127 (419) Q Consensus 63 ~~~~~~~~~~~~~---~~~-~~~----~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~-------~~ 127 (419) .+..-+.+.|+.. .+. .++ ...+...--...+...++++.+..++-.-|++|+.+.....|.. .+ T Consensus 79 rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~e 158 (629) T protein:vir:86 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) T ss_pred eeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhh Confidence 9999887755422 122 222 22233333334566788999999999999999998874433322 34 Q ss_pred EEEecCceeEEEEccceeEEEEeecc-cccccceEE--EecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 128 LYPLDNEAVTVMKGPDLKPMYRVAGA-DPLPQRLVH--HVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTA 204 (419) Q Consensus 128 l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~--~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~ 204 (419) ++.+.++.|+-.-++. .+....... ++....+++ ..+++|.....-.||+.+++..+.-..-..+...+..+.... T Consensus 159 W~~vt~~ei~~~~~~~-~i~lP~g~~~e~~~~~d~l~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~ 237 (629) T protein:vir:86 159 WLALTPEEVRASEKKT-IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) T ss_pred heeechHHhhhccCce-eeEcCCCCcceeeCCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHh Confidence 5556666555222221 111111111 223333443 334556666778899999999999888888888888888888 Q ss_pred CceEEEeCCCCCchh----------hH--------HHHHHHHHHHH----HHhccccccCc--ceecC------CCceee Q lcl|Aclame:pro 205 LSGVIERPTDAPALK----------DQ--------ASVDRITDGWN----AKFGGSGNAKK--VALLQ------EGMKFK 254 (419) Q Consensus 205 ~~~~~~~~~~~~~~~----------~~--------~~~~~~~~~~~----~~~~g~~n~g~--~~vl~------~g~~~~ 254 (419) -.|++.++....-.. .+ -..+.|++.|. ..+...+.+.. ++++. ++++.. T Consensus 238 gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hl 317 (629) T protein:vir:86 238 GNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) T ss_pred hCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEE Confidence 888876665322100 01 12333444444 45544433333 22222 223333 Q ss_pred ecCcChhhHHHHHHHHHHHHHHHHHhcCCHHH-cccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh--- Q lcl|Aclame:pro 255 PLSMTNVDAALIDALRLSALDIARIYKIPAHM-VNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE--- 330 (419) Q Consensus 255 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~-~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~--- 330 (419) .+. +..+---..+|+..+.+||...-|||.. +|...++|.-+.-+....-++--|.|.+.-|++++++.+|.+.. T Consensus 318 kf~-~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~e 396 (629) T protein:vir:86 318 KFD-NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMRE 396 (629) T ss_pred eec-CchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHHHh Confidence 333 3334445789999999999999999985 56556777766666666677888999999999999999987642 Q ss_pred h---hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-------------eeeecccc---- Q lcl|Aclame:pro 331 R---KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD-------------IYLSPMNM---- 390 (419) Q Consensus 331 ~---~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD-------------~~~~~~n~---- 390 (419) + ..|-++||.+.|... -.+.+-+..++..|.||-...|+.+||.-.++-| .+-....+ T Consensus 397 GiDp~kYvvW~DaS~Lt~d--Pd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li~~~ 474 (629) T protein:vir:86 397 GIDPNAYVVWHDASQLTVD--PDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTL 474 (629) T ss_pred CCCHHHhEeeecCcccccC--CCCcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchhhhh Confidence 2 356678998876532 2334445568899999999999999997643332 11111110 Q ss_pred -----------ccccccccccC---------CCCCCccccccchhc-----ccC Q lcl|Aclame:pro 391 -----------VDASKPQPIPM---------GKTEPTKAALDEIGR-----ILS 419 (419) Q Consensus 391 -----------~~~~~~~~~~~---------~~~~~~~~~~~e~~~-----~~~ 419 (419) .|...+...+. .+....+.+.+|.+. .=+ T Consensus 475 a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~a 528 (629) T protein:vir:86 475 AVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQA 528 (629) T ss_pred hhhhhhhcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCC Confidence 01111100000 000000111122111 111 No 141 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=99.27 E-value=1.8e-12 Score=84.96 Aligned_cols=413 Identities=10% Similarity=-0.008 Sum_probs=230.0 Q ss_pred CC--ccchhcccccccccccch---------------HHHHhhcCCC-cccccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGSGG---------------WVSALLGSAR-SEAGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |. -+|..++.|+.-.+..+- ......++.. .|+.. -.+-+-..|.++-.+..|++.++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~e--AW~~~d~v~Elry~vgW~~~s~Sr~ 78 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDD--AWKAYDAVGELRYYVGWRSSSASRV 78 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHH--HHHHHHhhhhHHHHhhhhhhhhcee Confidence 65 233343433321111100 0001011111 11111 1222233788889999999999999 Q ss_pred CeeEeeecCCcce---eec-cch----HHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce-------EE Q lcl|Aclame:pro 63 PVELYERSGDDRK---PAT-DHP----LYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI-------QG 127 (419) Q Consensus 63 ~~~~~~~~~~~~~---~~~-~~~----~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~-------~~ 127 (419) .+..-+.+.|+.. .+. .++ ...+...--...+...++++.+..++-.-|++|+.+.....|.. .+ T Consensus 79 rL~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~e 158 (629) T protein:vir:99 79 RLIASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPE 158 (629) T ss_pred eeEeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhh Confidence 9999887755422 122 222 22233333334566788999999999999999998874433322 34 Q ss_pred EEEecCceeEEEEccceeEEEEeecc-cccccceE--EEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCC Q lcl|Aclame:pro 128 LYPLDNEAVTVMKGPDLKPMYRVAGA-DPLPQRLV--HHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTA 204 (419) Q Consensus 128 l~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i--~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~ 204 (419) ++.+.++.|+-.-++. .+....... ++....++ ...+++|.....-.||+.+++..+.-..-..+...+..+.... T Consensus 159 W~~vt~~ei~~~~~~~-~i~lP~g~~~e~~~~~d~l~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakSRL~ 237 (629) T protein:vir:99 159 WLALTPEEVRASEKKT-IIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKSRLI 237 (629) T ss_pred heeechHHhhhccCce-eEEcCCCCccceeCCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHHHh Confidence 5556666555222221 111111111 12222333 3334566667778899999999999988888888888888888 Q ss_pred CceEEEeCCCCCchh----------hH--------HHHHHHHHHHH----HHhccccccCc--ceecC------CCceee Q lcl|Aclame:pro 205 LSGVIERPTDAPALK----------DQ--------ASVDRITDGWN----AKFGGSGNAKK--VALLQ------EGMKFK 254 (419) Q Consensus 205 ~~~~~~~~~~~~~~~----------~~--------~~~~~~~~~~~----~~~~g~~n~g~--~~vl~------~g~~~~ 254 (419) -.|++.++....-.. .+ -..+.|++.|. ..+...+.+.. ++++. ++++.. T Consensus 238 gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i~hl 317 (629) T protein:vir:99 238 GNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNVTHL 317 (629) T ss_pred hCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCeeEE Confidence 888876665322110 01 12333444444 45544433333 22222 223333 Q ss_pred ecCcChhhHHHHHHHHHHHHHHHHHhcCCHHH-cccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh--- Q lcl|Aclame:pro 255 PLSMTNVDAALIDALRLSALDIARIYKIPAHM-VNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE--- 330 (419) Q Consensus 255 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~-~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~--- 330 (419) .+. +..+---..+|+..+.+||...-|||.. +|...++|.-+.-+....-++--|.|.+.-|++++++.+|.+.. T Consensus 318 kf~-~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le~e 396 (629) T protein:vir:99 318 KFD-NQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLMRE 396 (629) T ss_pred eec-CchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHHHHh Confidence 333 3334445789999999999999999985 56556777766666666677888999999999999999987642 Q ss_pred h---hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-------------eeeecccc---- Q lcl|Aclame:pro 331 R---KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD-------------IYLSPMNM---- 390 (419) Q Consensus 331 ~---~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD-------------~~~~~~n~---- 390 (419) + ..|-++||.+.|... -.+.+-+..++..|.||-...|+.+||.-.++-| .+-....+ T Consensus 397 GiDp~kYvvW~DaS~Lt~d--Pd~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li~~~ 474 (629) T protein:vir:99 397 GIDPNAYVVWHDASQLTVD--PDKTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLPTL 474 (629) T ss_pred CCCHHHhEeeecCcccccC--CCCcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchhhhh Confidence 2 356678998876532 2334445568899999999999999997643332 11111110 Q ss_pred -----------ccccccccccC---------CCCCCccccccchhc-----ccC Q lcl|Aclame:pro 391 -----------VDASKPQPIPM---------GKTEPTKAALDEIGR-----ILS 419 (419) Q Consensus 391 -----------~~~~~~~~~~~---------~~~~~~~~~~~e~~~-----~~~ 419 (419) .|...+...+. ++....+.+.+|.+. .=+ T Consensus 475 a~l~~~~a~~~~P~~~~~~pp~~e~~~~dE~sga~~~~ep~te~d~~~~~a~~a 528 (629) T protein:vir:99 475 AVLIPELADVEFPTPTVALPPAEEQDGDEEASGASRREEPDTEDDAGTDDSDQA 528 (629) T ss_pred hhhhhhhcccccCccCCCCCccccCCCcccccCCCcCCCCCCCCCCcccccCCC Confidence 01111100000 000000111122111 111 No 142 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=99.27 E-value=3e-11 Score=78.27 Aligned_cols=300 Identities=12% Similarity=-0.000 Sum_probs=166.0 Q ss_pred eEEEeecCC-C--ceEEEEEecCceeE-EEEccceeEE-EEe---ecc--ccc-ccceEEEecCCCCCCcccccHHHHHH Q lcl|Aclame:pro 114 YSFIDRDQD-G--VIQGLYPLDNEAVT-VMKGPDLKPM-YRV---AGA--DPL-PQRLVHHVRWMSINGYTGLSPVLLHA 182 (419) Q Consensus 114 ~~~i~~~~~-G--~~~~l~~~~~~~v~-~~~~~~~~~~-~~~---~~~--~~~-~~~~i~~~~~~~~~~~~G~s~~~~~~ 182 (419) +.+|++... | .+..|.+.++.++. ...+.++... ... .+. ..+ +...|+|........++|.+.+..+. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 455555433 3 36778888887554 3333333322 111 121 223 33567777655566689999999999 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCch-h--------hHHHHHHHHHHHHHHhccccccCcceecCCCcee Q lcl|Aclame:pro 183 NAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPAL-K--------DQASVDRITDGWNAKFGGSGNAKKVALLQEGMKF 253 (419) Q Consensus 183 ~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~ 253 (419) -....-....++...+.+.-+.+--+.+.+...+.. . +++..+.+.........| .++ .++++.|+++ T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g-~~a--~~iip~g~~i 157 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAG-EAA--GGYIPHGANF 157 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCC-cce--eEeecCCceE Confidence 999999999999999999886655555554332221 1 122223333333322223 222 5677888888 Q ss_pred eecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc--cCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh- Q lcl|Aclame:pro 254 KPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL--ERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE- 330 (419) Q Consensus 254 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~--~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~- 330 (419) .-++......++.++.++-.++|+.++.-. .+.... .+++++- .+.......+.+.-.+..+++.||+.|+.+.- T Consensus 158 e~~ea~g~~~~~~~~i~~~d~~Isk~iLGq-tlTs~~~~~gGS~Al-g~vh~~v~~~~~~aD~~~i~~~ln~~li~~l~~ 235 (355) T protein:vir:78 158 TLTGVQGKLPEMDGPIRYHDEQIARAVLAH-FLTLGGDKSTGSYAL-GDTFASFFTGSLNAVMKHIADVTQQHVVEDLVD 235 (355) T ss_pred EEeecCCCcccHHHHHHHHHHHHHHHHhhh-hhccccCCccchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 777655555668888999999999888543 332211 1223332 34455667777788888899999988776431 Q ss_pred ---hh-hhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHH-----HHHHHhCCCCCCCcceeeecccc-cccccccccc Q lcl|Aclame:pro 331 ---RK-QYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSIN-----DIRRLENMPPVKGGDIYLSPMNM-VDASKPQPIP 400 (419) Q Consensus 331 ---~~-~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~N-----E~R~~lGl~p~~ggD~~~~~~n~-~~~~~~~~~~ 400 (419) +. ..+..|.++... .+.+..++.+.+++..|+..++ .+|+.+|+|.-+.++....+..- .+........ T Consensus 236 lN~~~~~~~P~~~~~~~~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~ 314 (355) T protein:vir:78 236 QNWGPEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRL 314 (355) T ss_pred hcCCCCCCCCEEEecCcC-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCcccccccccccccc Confidence 11 112223222222 3556789999999999987764 47999999865545444332211 0000000000 Q ss_pred CC--------CCCCccccccchhcccC Q lcl|Aclame:pro 401 MG--------KTEPTKAALDEIGRILS 419 (419) Q Consensus 401 ~~--------~~~~~~~~~~e~~~~~~ 419 (419) .+ ...+...+.++..-.++ T Consensus 315 ~~~~~~~~~~a~~~~a~~~~~~~~~~~ 341 (355) T protein:vir:78 315 PGQRQGAALPSRSPRADPPRRRGPLRR 341 (355) T ss_pred CCccccccccccCCCCCChhhhHHHHH Confidence 00 00000001111111111 No 143 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=99.26 E-value=2.1e-12 Score=84.63 Aligned_cols=409 Identities=11% Similarity=0.045 Sum_probs=227.8 Q ss_pred CCccchhcccccccccccc------h--------------HHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSG------G--------------WVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIA 60 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~------~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia 60 (419) |.++|-.- +...|... . ......+....|+.. -.+-+-..|.++-.+..|++.++ T Consensus 1 ~~~~rPk~---~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~~~~WQ~e--AW~~~d~vpELry~vgW~~~a~S 75 (646) T protein:vir:10 1 MALLKPKS---APPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFGNKDWQTE--GWRLYDIIPEHHFLAGRIGDSVA 75 (646) T ss_pred CcccCCCC---CCCCcccccccchhhhhhccccccCCCcceeecCCCcchhhhHH--HHHHHhhhhhHhhHhhhhhhhhc Confidence 77654321 11111100 0 000000011111111 12223335888899999999999 Q ss_pred cCCeeEeeecCCcce--eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEe---ecCCCceEEEEEecCce Q lcl|Aclame:pro 61 QLPVELYERSGDDRK--PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFID---RDQDGVIQGLYPLDNEA 135 (419) Q Consensus 61 ~~~~~~~~~~~~~~~--~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~---~~~~G~~~~l~~~~~~~ 135 (419) .+.+..-+.+..|.. .+..+....+....--...-..++++.+..++-.-|++|+... ....+--..++++..+. T Consensus 76 R~rL~aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~~~~W~vvt~~E 155 (646) T protein:vir:10 76 QARLYVTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAAEGSWFVVTGSA 155 (646) T ss_pred eeeeeeeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCCccceeeecHHH Confidence 999999877755543 2334455555544443444557899999999999999999742 11222233456666666 Q ss_pred eEEEEccceeEEEEee---c--ccccccceEEE--ecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 136 VTVMKGPDLKPMYRVA---G--ADPLPQRLVHH--VRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGV 208 (419) Q Consensus 136 v~~~~~~~~~~~~~~~---~--~~~~~~~~i~~--~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~ 208 (419) |.. ..+........ + ..+....++++ .+++|.....-.||+.+++..+.-..-..+...+..+....-.|+ T Consensus 156 v~~--tg~~~~i~~p~~~~g~~~v~~~~~d~lvRiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~GnGv 233 (646) T protein:vir:10 156 ISR--TGDEIAVRRPQQRGGSKLVLVDGQDILIRCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLTGAGI 233 (646) T ss_pred hcc--CCCeeeeecCccCCCCCcceecCCceEEEEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHhcCce Confidence 632 11111111111 1 12233334433 345566667788999999999999998888888888989999999 Q ss_pred EEeCCCCCc---hhhHHHHHHHHHHH----HHHhccccccCc--ceecCC-Cc------eeeecCc-ChhhHHHHHHHHH Q lcl|Aclame:pro 209 IERPTDAPA---LKDQASVDRITDGW----NAKFGGSGNAKK--VALLQE-GM------KFKPLSM-TNVDAALIDALRL 271 (419) Q Consensus 209 ~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~g~~n~g~--~~vl~~-g~------~~~~l~~-~~~d~~~~e~~~~ 271 (419) +.+|+..+- ..+....+.|++.| ...+...+.+.. ++++.. |. +++.+.+ +..+---..+|+. T Consensus 234 LfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aiktR~d 313 (646) T protein:vir:10 234 MFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITPMKDK 313 (646) T ss_pred eeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhhhHHH Confidence 988764322 11112233444333 334444333322 233221 11 3443333 3344456789999 Q ss_pred HHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh---h----hhhhhhhhhhhhh Q lcl|Aclame:pro 272 SALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE---R----KQYFIEYNLAGLL 344 (419) Q Consensus 272 ~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~---~----~~~~~~fd~~~~~ 344 (419) .+.+||...-|||..|-+.+++|.-+.-+....-++ -|.|.+.-|++++++.+|.+.. + ..|-++||.+.+. T Consensus 314 aI~RlA~glDIppE~LLGlgd~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~DaS~Lt 392 (646) T protein:vir:10 314 AIARLASSAEIPGEVLTGIGDANHWTAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDTSTLA 392 (646) T ss_pred HHHHHHhccCCchhheeeccccceeeeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecCcccc Confidence 999999999999986555556776666666666666 5999999999999999987642 2 2456789998865 Q ss_pred hccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcce------------------eeeccccccccccc--------- Q lcl|Aclame:pro 345 RGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDI------------------YLSPMNMVDASKPQ--------- 397 (419) Q Consensus 345 ~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~------------------~~~~~n~~~~~~~~--------- 397 (419) .. -.+.+-+..++..|.||-...|+.+||.--++-+. .+.|.-..+.+.+. T Consensus 393 ~~--pd~~deA~qa~drGAIt~eAlrk~~Gf~~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa~~~~P~~~~~~lpp~ 470 (646) T protein:vir:10 393 SK--PNRLDEAIQLHERNLIKDEEVVKAGAFSVDQMPTVQERAVQILLGLVKTQPDLILDPAIQAALGLPAVQSVGLPPT 470 (646) T ss_pred cC--CCCcHHHHHHHHcCCccHHHHHHHhcccccccCChHHHHHHHHHHHhcCCccccccchhhccccCCCcCccccCCc Confidence 32 23344455688999999999999999975432111 00111101111100 Q ss_pred ----------ccc-CCCCCCc----cccccchhcccC Q lcl|Aclame:pro 398 ----------PIP-MGKTEPT----KAALDEIGRILS 419 (419) Q Consensus 398 ----------~~~-~~~~~~~----~~~~~e~~~~~~ 419 (419) +.+ .+.++.. +.+.++.+..-+ T Consensus 471 ~~~~~dg~~~~~e~~g~~~~~E~~~~pda~~~~a~~~ 507 (646) T protein:vir:10 471 AAQRTDGDLDDDESEGAPNGGEAPDQPDADEARAITA 507 (646) T ss_pred ccccccCCCCChhhcCCCCCCccCCCCCCCccccccc Confidence 000 0000000 001111111111 No 144 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=99.23 E-value=4.1e-12 Score=82.98 Aligned_cols=415 Identities=14% Similarity=0.088 Sum_probs=230.0 Q ss_pred CC--ccchhcccccccccccch---------------HHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCC Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGSGG---------------WVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLP 63 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~ 63 (419) |. -+|..++.|+..-...+. +-...+++....++ .=-.+-+-..|.++-.+..|++.++.+. T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ-~eAW~~~d~v~Elry~vgW~~~s~sr~r 79 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQ-SEAWDFSESIGELSYYVSWRANSCSRTT 79 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhh-hhhhhhhhhhhhHHHHhhhhhhhhceee Confidence 65 223333333322111110 11111221111111 1112223345888999999999999999 Q ss_pred eeEeeecCCcc-----eeeccc----hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEe-ecCCCc-------eE Q lcl|Aclame:pro 64 VELYERSGDDR-----KPATDH----PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFID-RDQDGV-------IQ 126 (419) Q Consensus 64 ~~~~~~~~~~~-----~~~~~~----~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~-~~~~G~-------~~ 126 (419) +..-..+.|.. ...+.+ .+....+.=-...+...++++.+..++-.-|++|+.+. +..++- -. T Consensus 80 L~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~ 159 (639) T protein:vir:97 80 LIPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRA 159 (639) T ss_pred eEeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCccccccc Confidence 99987775533 111222 23233222223456778899999999999999997643 344332 23 Q ss_pred EEEEecCceeEEEEccceeEEEEeeccc--cccc--ceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 127 GLYPLDNEAVTVMKGPDLKPMYRVAGAD--PLPQ--RLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNG 202 (419) Q Consensus 127 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~--~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng 202 (419) +++.+..+.|+........+... .|.. +... -.+...+++|.....-.||+.+++..+.-..-..+...+..+.. T Consensus 160 ~W~vvs~~Ei~~~~~~~~~i~lP-dG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSR 238 (639) T protein:vir:97 160 RWYAVTREEIKSKAGETAEISLP-DGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSR 238 (639) T ss_pred ceeeeeHHHhcccCCCeeEeecC-CCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHH Confidence 44555555554222222212221 1211 1112 23344455666677788999999999999888888888888888 Q ss_pred CCCceEEEeCCCCCchhhH---------------------HHHHHHHHHH----HHHhccccccCc--ceecCC----Cc Q lcl|Aclame:pro 203 TALSGVIERPTDAPALKDQ---------------------ASVDRITDGW----NAKFGGSGNAKK--VALLQE----GM 251 (419) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~----~~~~~g~~n~g~--~~vl~~----g~ 251 (419) ..-.|++.+|..+.-...+ ...+.|++.| ...+...+.+.. ++++.. .- T Consensus 239 l~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~ 318 (639) T protein:vir:97 239 VMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLE 318 (639) T ss_pred HhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhc Confidence 8888887776543221111 1233444443 334444333222 222221 12 Q ss_pred eeeecCc-ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh Q lcl|Aclame:pro 252 KFKPLSM-TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE 330 (419) Q Consensus 252 ~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~ 330 (419) +++.|.+ +..+---..+|+..+.+||...-|||..|-+.+++|.-+.-+....-++--|.|.+.-|++++++.+|.+.. T Consensus 319 ~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lrp~L 398 (639) T protein:vir:97 319 KVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILTPLL 398 (639) T ss_pred CeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHH Confidence 4444444 334445678999999999999999998654446677766666666677888999999999999999987642 Q ss_pred ---h---hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-------------eeeecccc- Q lcl|Aclame:pro 331 ---R---KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD-------------IYLSPMNM- 390 (419) Q Consensus 331 ---~---~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD-------------~~~~~~n~- 390 (419) + ..|-++||.+.|... -++.+-+..++..|.||-.-.|..+|+..-+|=| .+-.+..+ T Consensus 399 e~eGvDp~kYvvW~DaS~Lt~d--Pd~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li 476 (639) T protein:vir:97 399 AREGIDPTKYILWYDASGLTSD--PDLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELI 476 (639) T ss_pred HHhCCCHHHhEeeecCcccccC--CCCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchh Confidence 2 356678999876532 2334445568899999999999999997654322 01001110 Q ss_pred -----------ccccccccccCCCCC-------------Cccccccchhccc------C Q lcl|Aclame:pro 391 -----------VDASKPQPIPMGKTE-------------PTKAALDEIGRIL------S 419 (419) Q Consensus 391 -----------~~~~~~~~~~~~~~~-------------~~~~~~~e~~~~~------~ 419 (419) +..+-+.+....+.. ....++.|...-- + T Consensus 477 ~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~~~~a~~~~ 535 (639) T protein:vir:97 477 AMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERSTEEAASLN 535 (639) T ss_pred hhhhhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccCCccccCcC Confidence 001100000000000 0001112222211 0 No 145 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=99.23 E-value=4.1e-12 Score=82.98 Aligned_cols=415 Identities=14% Similarity=0.088 Sum_probs=230.0 Q ss_pred CC--ccchhcccccccccccch---------------HHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCC Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGSGG---------------WVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLP 63 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~ 63 (419) |. -+|..++.|+..-...+. +-...+++....++ .=-.+-+-..|.++-.+..|++.++.+. T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ-~eAW~~~d~v~Elry~vgW~~~s~sr~r 79 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQ-SEAWDFSESIGELSYYVSWRANSCSRTT 79 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhh-hhhhhhhhhhhhHHHHhhhhhhhhceee Confidence 65 223333333322111110 11111221111111 1112223345888999999999999999 Q ss_pred eeEeeecCCcc-----eeeccc----hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEe-ecCCCc-------eE Q lcl|Aclame:pro 64 VELYERSGDDR-----KPATDH----PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFID-RDQDGV-------IQ 126 (419) Q Consensus 64 ~~~~~~~~~~~-----~~~~~~----~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~-~~~~G~-------~~ 126 (419) +..-..+.|.. ...+.+ .+....+.=-...+...++++.+..++-.-|++|+.+. +..++- -. T Consensus 80 L~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~ 159 (639) T protein:vir:10 80 LIPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRA 159 (639) T ss_pred eEeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCccccccc Confidence 99987775533 111222 23233222223456778899999999999999997643 344332 23 Q ss_pred EEEEecCceeEEEEccceeEEEEeeccc--cccc--ceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 127 GLYPLDNEAVTVMKGPDLKPMYRVAGAD--PLPQ--RLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNG 202 (419) Q Consensus 127 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~--~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng 202 (419) +++.+..+.|+........+... .|.. +... -.+...+++|.....-.||+.+++..+.-..-..+...+..+.. T Consensus 160 ~W~vvs~~Ei~~~~~~~~~i~lP-dG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaakSR 238 (639) T protein:vir:10 160 RWYAVTREEIKSKAGETAEISLP-DGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAAKSR 238 (639) T ss_pred ceeeeeHHHhcccCCCeeEeecC-CCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHHH Confidence 44555555554222222212221 1211 1112 23344455666677788999999999999888888888888888 Q ss_pred CCCceEEEeCCCCCchhhH---------------------HHHHHHHHHH----HHHhccccccCc--ceecCC----Cc Q lcl|Aclame:pro 203 TALSGVIERPTDAPALKDQ---------------------ASVDRITDGW----NAKFGGSGNAKK--VALLQE----GM 251 (419) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~----~~~~~g~~n~g~--~~vl~~----g~ 251 (419) ..-.|++.+|..+.-...+ ...+.|++.| ...+...+.+.. ++++.. .- T Consensus 239 l~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E~l~ 318 (639) T protein:vir:10 239 VMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAEHLE 318 (639) T ss_pred HhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechHHhc Confidence 8888887776543221111 1233444443 334444333222 222221 12 Q ss_pred eeeecCc-ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh Q lcl|Aclame:pro 252 KFKPLSM-TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE 330 (419) Q Consensus 252 ~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~ 330 (419) +++.|.+ +..+---..+|+..+.+||...-|||..|-+.+++|.-+.-+....-++--|.|.+.-|++++++.+|.+.. T Consensus 319 ~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lrp~L 398 (639) T protein:vir:10 319 KVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILTPLL 398 (639) T ss_pred CeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHH Confidence 4444444 334445678999999999999999998654446677766666666677888999999999999999987642 Q ss_pred ---h---hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-------------eeeecccc- Q lcl|Aclame:pro 331 ---R---KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD-------------IYLSPMNM- 390 (419) Q Consensus 331 ---~---~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD-------------~~~~~~n~- 390 (419) + ..|-++||.+.|... -++.+-+..++..|.||-.-.|..+|+..-+|=| .+-.+..+ T Consensus 399 e~eGvDp~kYvvW~DaS~Lt~d--Pd~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P~li 476 (639) T protein:vir:10 399 AREGIDPTKYILWYDASGLTSD--PDLSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNPELI 476 (639) T ss_pred HHhCCCHHHhEeeecCcccccC--CCCcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCcchh Confidence 2 356678999876532 2334445568899999999999999997654322 01001110 Q ss_pred -----------ccccccccccCCCCC-------------Cccccccchhccc------C Q lcl|Aclame:pro 391 -----------VDASKPQPIPMGKTE-------------PTKAALDEIGRIL------S 419 (419) Q Consensus 391 -----------~~~~~~~~~~~~~~~-------------~~~~~~~e~~~~~------~ 419 (419) +..+-+.+....+.. ....++.|...-- + T Consensus 477 ~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~ga~~~~ePdte~~~~~~~a~~~~ 535 (639) T protein:vir:10 477 AMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSGARQQREPQTEDERSTEEAASLN 535 (639) T ss_pred hhhhhccCccceecccCCCCCCCCCCCCCCCcccccCCCCCcCCCcccccCCccccCcC Confidence 001100000000000 0001112222211 0 No 146 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=99.17 E-value=2.2e-11 Score=79.03 Aligned_cols=415 Identities=15% Similarity=0.087 Sum_probs=226.8 Q ss_pred CC--ccchhccccccccccc---------ch--HHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGS---------GG--WVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) |. -+|-.++.++.-...+ .+ +-..+.|.....++..=-.+-+-..|.++-.+..+++.++.+.+..- T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~aasqp~~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~as 80 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLTAASQPMEPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELIAS 80 (629) T ss_pred CCccceeEEecCCCccceeeeccccCCCCcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEEEe Confidence 65 2333333333311000 00 00111121101111000122222357788888999999999999988 Q ss_pred eecCCcce---ee-ccchHH----HHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCc----eE-EEEEecCc Q lcl|Aclame:pro 68 ERSGDDRK---PA-TDHPLY----SILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGV----IQ-GLYPLDNE 134 (419) Q Consensus 68 ~~~~~~~~---~~-~~~~~~----~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~----~~-~l~~~~~~ 134 (419) ..+.|... .+ +.++.. .....=-...+...++++.+..++-.-|+.|+.+.-...+. +. +++.+..+ T Consensus 81 ~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt~~ 160 (629) T protein:vir:10 81 ELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVTND 160 (629) T ss_pred eecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeecHH Confidence 77654322 12 122221 12222223456778899999999999999999886444332 23 44555555 Q ss_pred eeEEEEccceeEEEEe-ecc--cccccceEEEe--cCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEE Q lcl|Aclame:pro 135 AVTVMKGPDLKPMYRV-AGA--DPLPQRLVHHV--RWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI 209 (419) Q Consensus 135 ~v~~~~~~~~~~~~~~-~~~--~~~~~~~i~~~--~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~ 209 (419) .|+.. ..++..... .+. .+....+++++ +++|.....-.||+.+++..+.-..-..+...+..+....-.|++ T Consensus 161 Ei~~k--g~g~~~i~lpdg~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakSRL~gnGvl 238 (629) T protein:vir:10 161 EVKNK--GAGKTDIELPDGTIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKSRLIGNGVV 238 (629) T ss_pred Hhccc--cCceeEEEcCCCceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHhHHhhCcee Confidence 54411 111111111 111 22233444444 345556667789999999999998888888888888888888887 Q ss_pred EeCCCCCch--------h----------hHHHHHHHHHHHH----HHhccccccCcc--eecC-CC---ceeeecCcC-h Q lcl|Aclame:pro 210 ERPTDAPAL--------K----------DQASVDRITDGWN----AKFGGSGNAKKV--ALLQ-EG---MKFKPLSMT-N 260 (419) Q Consensus 210 ~~~~~~~~~--------~----------~~~~~~~~~~~~~----~~~~g~~n~g~~--~vl~-~g---~~~~~l~~~-~ 260 (419) .++....-. . +....+.|++.|. ..+...+.+..+ +++. .| -+++.|.+. . T Consensus 239 flP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~ikhLkf~~e 318 (629) T protein:vir:10 239 FLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQKIFHLKIGNE 318 (629) T ss_pred EeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcCeeeeeecCc Confidence 666532211 1 1123344444443 344443332222 2221 11 244444442 3 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCHHH-cccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh---h---hh Q lcl|Aclame:pro 261 VDAALIDALRLSALDIARIYKIPAHM-VNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE---R---KQ 333 (419) Q Consensus 261 ~d~~~~e~~~~~~~~Ia~~fgvpp~~-~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~---~---~~ 333 (419) .+---..+|+..+.++|...-|||.. +|...++|.-+.-+....-++--|.|.+.-|++++++.+|.+-. + .. T Consensus 319 ite~~iktR~daI~RlAmglDispErLLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~Ait~~~Lrp~L~~eGiDp~~ 398 (629) T protein:vir:10 319 ITEVEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVQLHIKPVMEVLCAAIYREVLVATLRAEGIDPDR 398 (629) T ss_pred hhHHHHhhHHHHHHHHHhccCCChhheeeccCCccceeeEEecccceeeecchHHHHHHHHHHhHHHHHHHHHhCCCHHH Confidence 34445778999999999999999985 56556777776666666677888999999999999999887542 2 35 Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcc-------------eeeecccc---------- Q lcl|Aclame:pro 334 YFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGD-------------IYLSPMNM---------- 390 (419) Q Consensus 334 ~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD-------------~~~~~~n~---------- 390 (419) |-++||.+.+.. |. ++.+-+..+...|.||-...|+.+|+...++=| .+..+..+ T Consensus 399 Yvvw~DaS~Lt~-dP-d~~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P~Li~~~apll~~ 476 (629) T protein:vir:10 399 YVLWYDASGLTV-DP-DKTDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADPSLIKVLAPLLTD 476 (629) T ss_pred hEeeecCccccc-CC-CCcHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCCchhhhhhhhcCC Confidence 667899887643 22 233445567899999999999999997644311 11111110 Q ss_pred --ccccccccccCCCCC-----------Cccccccch----hcccC Q lcl|Aclame:pro 391 --VDASKPQPIPMGKTE-----------PTKAALDEI----GRILS 419 (419) Q Consensus 391 --~~~~~~~~~~~~~~~-----------~~~~~~~e~----~~~~~ 419 (419) +..+.+.+.....+. +.+.+.+|. ....+ T Consensus 477 ~l~~i~~P~p~~a~~~~~~~~~~~E~~~~~~e~~~e~dA~~a~~~~ 522 (629) T protein:vir:10 477 ELAEIDWPEPPAALPPGEDDQADEEQDTTGSEPSTEDDAEAAARIS 522 (629) T ss_pred ccccccccCCCCcCCCCCcccCccccCCCCCCcCCCcchhhcccCC Confidence 111111111111111 111111111 11111 No 147 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=98.79 E-value=3.3e-08 Score=61.57 Aligned_cols=384 Identities=11% Similarity=0.017 Sum_probs=178.4 Q ss_pred CCccchhccccccc-cc-----------ccchHHHH---hhcCCCcc----------------cc---c--ccCHHHHhc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQT-QP-----------GSGGWVSA---LLGSARSE----------------AG---Q--VVTPASALS 44 (419) Q Consensus 1 M~f~~~~~~~~~~~-~~-----------~~~~~~~~---~~~~~~~~----------------~~---~--~~~~~~~~~ 44 (419) |-+.+.+....... ++ .....+.. ..-+.... .+ . ...+..=+. T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (474) T protein:vir:10 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLN 80 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccc Confidence 33332221111100 00 00000000 00000000 00 0 000011133 Q ss_pred cHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCc Q lcl|Aclame:pro 45 LTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGV 124 (419) Q Consensus 45 ~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~ 124 (419) ++.....|+..+..+-+-|+++.-.......+.....+..++. ..........+..+.+.+|.||.++..+..|. T Consensus 81 ~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~-----~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~ 155 (474) T protein:vir:10 81 NSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAI-----RNSVDDEDSEIGKMAAICGYGARLAYIDTNGD 155 (474) T ss_pred cchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHh-----hcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCe Confidence 6677788888888888889886542222111111122222332 12445567778899999999999998888886 Q ss_pred eEEEEEecCceeEEEEccceeEE----EEe-e---cc------cccccce--------------------------EEEe Q lcl|Aclame:pro 125 IQGLYPLDNEAVTVMKGPDLKPM----YRV-A---GA------DPLPQRL--------------------------VHHV 164 (419) Q Consensus 125 ~~~l~~~~~~~v~~~~~~~~~~~----~~~-~---~~------~~~~~~~--------------------------i~~~ 164 (419) + .+..++|..+-+..+..+... ++. . +. ....+.. |+++ T Consensus 156 ~-~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 234 (474) T protein:vir:10 156 I-RIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGV 234 (474) T ss_pred e-EEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEe Confidence 5 455667777665554332111 000 0 00 0000001 1222 Q ss_pred cCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcc Q lcl|Aclame:pro 165 RWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKV 244 (419) Q Consensus 165 ~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~ 244 (419) + +...|.|.+..+...++....+.....+.+...+.|-.+++--. .+++....++ ..+.+ T Consensus 235 ~----n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~-----~~~~~~~~~~-----------~~~~i 294 (474) T protein:vir:10 235 P----NNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMG-----MSEEMIQETQ-----------KSGAF 294 (474) T ss_pred c----CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCC-----CCchhhhhhh-----------hccee Confidence 2 22357888888888887776666666666666666666654211 1222222211 12445 Q ss_pred eecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHH Q lcl|Aclame:pro 245 ALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPW 313 (419) Q Consensus 245 ~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~ 313 (419) .+.+++.++.-+.....+..+....+...+.|...-++|....+.. +..++..+. ......+...+.-. T Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~ 374 (474) T protein:vir:10 295 ELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQ 374 (474) T ss_pred EecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 6667677776666555556678888899999999999986543322 211211111 11122333344443 Q ss_pred HHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeeeccccc Q lcl|Aclame:pro 314 VKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLSPMNMV 391 (419) Q Consensus 314 ~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~~~n~~ 391 (419) ++.|...+..+-..........+.+.+..-...|..+.++.+.++ .|+++..-+.+++++-+-+ ..+++-.-. .. T Consensus 375 ~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E~-~e 451 (474) T protein:vir:10 375 FKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKES-LE 451 (474) T ss_pred HHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHH-HH Confidence 333333333221111111112344445555677899999999887 4889998888988764321 111110000 00 Q ss_pred ccccccccc-CCCCCCccccccc Q lcl|Aclame:pro 392 DASKPQPIP-MGKTEPTKAALDE 413 (419) Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~e 413 (419) ......... ....+..++.++| T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:10 452 FNDKLPDIDEGDANDKSQNNQSE 474 (474) T ss_pred HHhhcccccCCCcCCCCccccCC Confidence 000000000 1111111222222 No 148 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=98.79 E-value=3.3e-08 Score=61.57 Aligned_cols=384 Identities=11% Similarity=0.017 Sum_probs=178.4 Q ss_pred CCccchhccccccc-cc-----------ccchHHHH---hhcCCCcc----------------cc---c--ccCHHHHhc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQT-QP-----------GSGGWVSA---LLGSARSE----------------AG---Q--VVTPASALS 44 (419) Q Consensus 1 M~f~~~~~~~~~~~-~~-----------~~~~~~~~---~~~~~~~~----------------~~---~--~~~~~~~~~ 44 (419) |-+.+.+....... ++ .....+.. ..-+.... .+ . ...+..=+. T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (474) T protein:vir:94 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLN 80 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccc Confidence 33332221111100 00 00000000 00000000 00 0 000011133 Q ss_pred cHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCc Q lcl|Aclame:pro 45 LTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGV 124 (419) Q Consensus 45 ~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~ 124 (419) ++.....|+..+..+-+-|+++.-.......+.....+..++. ..........+..+.+.+|.||.++..+..|. T Consensus 81 ~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~~~-----~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~ 155 (474) T protein:vir:94 81 NSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNFAI-----RNSVDDEDSEIGKMAAICGYGARLAYIDTNGD 155 (474) T ss_pred cchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHHHh-----hcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCe Confidence 6677788888888888889886542222111111122222332 12445567778899999999999998888886 Q ss_pred eEEEEEecCceeEEEEccceeEE----EEe-e---cc------cccccce--------------------------EEEe Q lcl|Aclame:pro 125 IQGLYPLDNEAVTVMKGPDLKPM----YRV-A---GA------DPLPQRL--------------------------VHHV 164 (419) Q Consensus 125 ~~~l~~~~~~~v~~~~~~~~~~~----~~~-~---~~------~~~~~~~--------------------------i~~~ 164 (419) + .+..++|..+-+..+..+... ++. . +. ....+.. |+++ T Consensus 156 ~-~~~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~ 234 (474) T protein:vir:94 156 I-RIKNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGV 234 (474) T ss_pred e-EEEEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEe Confidence 5 455667777665554332111 000 0 00 0000001 1222 Q ss_pred cCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcc Q lcl|Aclame:pro 165 RWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKV 244 (419) Q Consensus 165 ~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~ 244 (419) + +...|.|.+..+...++....+.....+.+...+.|-.+++--. .+++....++ ..+.+ T Consensus 235 ~----n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~i~g~~-----~~~~~~~~~~-----------~~~~i 294 (474) T protein:vir:94 235 P----NNKEMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYLVLRGMG-----MSEEMIQETQ-----------KSGAF 294 (474) T ss_pred c----CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccCC-----CCchhhhhhh-----------hccee Confidence 2 22357888888888887776666666666666666666654211 1222222211 12445 Q ss_pred eecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHH Q lcl|Aclame:pro 245 ALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPW 313 (419) Q Consensus 245 ~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~ 313 (419) .+.+++.++.-+.....+..+....+...+.|...-++|....+.. +..++..+. ......+...+.-. T Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~ 374 (474) T protein:vir:94 295 ELFDKDMDVKYLTKDVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQ 374 (474) T ss_pred EecCCCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 6667677776666555556678888899999999999986543322 211211111 11122333344443 Q ss_pred HHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeeeccccc Q lcl|Aclame:pro 314 VKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLSPMNMV 391 (419) Q Consensus 314 ~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~~~n~~ 391 (419) ++.|...+..+-..........+.+.+..-...|..+.++.+.++ .|+++..-+.+++++-+-+ ..+++-.-. .. T Consensus 375 ~~li~~~l~~~~~~~~~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E~-~e 451 (474) T protein:vir:94 375 FKVILSALKRKGYNLDDDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKES-LE 451 (474) T ss_pred HHHHHHHHhhccCCCCccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHH-HH Confidence 333333333221111111112344445555677899999999887 4889998888988764321 111110000 00 Q ss_pred ccccccccc-CCCCCCccccccc Q lcl|Aclame:pro 392 DASKPQPIP-MGKTEPTKAALDE 413 (419) Q Consensus 392 ~~~~~~~~~-~~~~~~~~~~~~e 413 (419) ......... ....+..++.++| T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~s~ 474 (474) T protein:vir:94 452 FNDKLPDIDEGDANDKSQNNQSE 474 (474) T ss_pred HHhhcccccCCCcCCCCccccCC Confidence 000000000 1111111222222 No 149 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=98.68 E-value=9.7e-08 Score=59.03 Aligned_cols=405 Identities=12% Similarity=0.103 Sum_probs=190.9 Q ss_pred CCccchhc-------------------ccccc-ccc-c-----cch-HHHHhhcCCCccc--ccccCHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLL-------------------SNLGQ-TQP-G-----SGG-WVSALLGSARSEA--GQVVTPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~-------------------~~~~~-~~~-~-----~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~ 51 (419) |-||.+.. ...+. ..+ . ... .-..++|+...-. ......+.++.+|.|.+| T Consensus 4 ~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEVd~A 83 (533) T protein:vir:58 4 LEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLISTV 83 (533) T ss_pred cchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcchhhH Confidence 22332210 00110 001 0 001 1122333221100 011123445678999999 Q ss_pred HHHHHHhhccC-----CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec-CCCce Q lcl|Aclame:pro 52 VTLLAESIAQL-----PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD-QDGVI 125 (419) Q Consensus 52 i~~ia~~ia~~-----~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~-~~G~~ 125 (419) |+.|++.+.-. |+.+.-...+ ........+..+| |....+++ ++..|..+|+.|..+.-+ ..+-+ T Consensus 84 ideIvneaiv~d~~~~pV~v~l~~~e-~s~~iK~kI~~ll----df~~~~~~----~fR~WYVDGriy~Hkiik~~k~GI 154 (533) T protein:vir:58 84 LDIIADECTIPNENGNIVDVVTKDIE-LAKAILSYLDYVI----NIEKNAYP----IIRNMIKYGDMFLHILEKGSDGTI 154 (533) T ss_pred HHhhhceeeEecCCCceeEeeccccc-ccHHHHHHHHHHh----cchhhhhH----HHHhhhhcceeEEEeccCCcccch Confidence 99999876422 2222211111 0011112222222 23344444 445677789999988532 34558 Q ss_pred EEEEEecCceeEEEEccceeEEEEeecc-----------cccccceEEEecCC--CCCCcccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 126 QGLYPLDNEAVTVMKGPDLKPMYRVAGA-----------DPLPQRLVHHVRWM--SINGYTGLSPVLLHANAIGHAQAIQ 192 (419) Q Consensus 126 ~~l~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~--~~~~~~G~s~~~~~~~~i~~~~~~~ 192 (419) .+|..|+|..++.++...+...|+..+. ...+++.|.|..+. ..++.+++|-+..+.+..+...-+. T Consensus 155 ~elr~lDPr~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiE 234 (533) T protein:vir:58 155 EKFQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLME 234 (533) T ss_pred hhheecCCeeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHH Confidence 8999999999998877655444444331 23456777777654 4456778888999988888777777 Q ss_pred HHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcce----------ec----------CCCc Q lcl|Aclame:pro 193 QYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKVA----------LL----------QEGM 251 (419) Q Consensus 193 ~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~----------vl----------~~g~ 251 (419) +...-+=-..+.-+-++.++-+ ++..+.++-+..+...+++++-=..+.|.+. .+ ..|. T Consensus 235 DAlVIYRisRAPeRRvFYIDVGNlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgT 314 (533) T protein:vir:58 235 DALMLYRVVRSVDRRVFYVDVGNVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAV 314 (533) T ss_pred HHHHHHhhcCChhheEEEEeecCCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccc Confidence 7666665566666667766633 3334445666666666666544444445441 11 1467 Q ss_pred eeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccccc-HHHHHHHHHHHHhhHHHHHHHHHHHhhccChhh Q lcl|Aclame:pro 252 KFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSN-IEHQSLQFVIYTLLPWVKRHEQAKTRDLLLPSE 330 (419) Q Consensus 252 ~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn-~e~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~ 330 (419) +++.|... . +.-.+-.++..+.+..+++||.+-++..++...++ +.-.... +..-|.-+-.++.+.|..+|..+.- T Consensus 315 EI~TLpGg-~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiK-F~KFI~rLR~rF~~ll~~qLilk~i 391 (533) T protein:vir:58 315 EIDILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIK-FNNTIKRIQGFFVEELERMVRMNKE 391 (533) T ss_pred eeeecCCC-C-CCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHH-HHHHHHHHHHHHHHHHhcccccccC Confidence 88877643 2 55567778999999999999999887654432221 1111112 3334455556677778777765433 Q ss_pred h--hhhhhhhhhhhhhhc--c---HHHHHHHHHHH---HhC-----C--CcCH-----HHHHHHhCCCCC-C----Ccce Q lcl|Aclame:pro 331 R--KQYFIEYNLAGLLRG--D---QSSRYAAYAVG---RQW-----G--WLSI-----NDIRRLENMPPV-K----GGDI 383 (419) Q Consensus 331 ~--~~~~~~fd~~~~~~~--d---~~~~~~~~~~~---~~~-----g--~~T~-----NE~R~~lGl~p~-~----ggD~ 383 (419) - ..+.+.|..|..... + +..+..+++.+ ++. . -+|= .|+-+..+..++ + +++. T Consensus 392 it~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~tdei~~q~e~ie~E~~~~~~~~~~~~~e~ 471 (533) T protein:vir:58 392 FADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIPYDLKPQEEVAEAAGGGGLFDTGGFGEET 471 (533) T ss_pred cchhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCChhhhHHHHHHHHhhcCCCCCCCCccccc Confidence 2 222333333332110 0 11222222211 110 0 1221 122222222221 1 1221 Q ss_pred eeecccccc-ccccccccCCCCC--CccccccchhcccC Q lcl|Aclame:pro 384 YLSPMNMVD-ASKPQPIPMGKTE--PTKAALDEIGRILS 419 (419) Q Consensus 384 ~~~~~n~~~-~~~~~~~~~~~~~--~~~~~~~e~~~~~~ 419 (419) .|...-+ ..++.+.+.+..+ -+..+..+.|.-+. T Consensus 472 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (533) T protein:vir:58 472 --TPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELN 508 (533) T ss_pred --CCcccCccccCcccCCCChhhHhcccCCccccccccc Confidence 1111100 0011111000000 00000111111111 No 150 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=98.62 E-value=8.8e-08 Score=59.27 Aligned_cols=385 Identities=11% Similarity=0.007 Sum_probs=177.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc--ccccccCH-----HHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVTP-----ASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (419) ..+..++.+......+.- ..+....-+... ........ ..-..+.....+|+..++.+-.-|+.+.... +. T Consensus 7 ~~~~~~l~~~~~~~~~r~-~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~-d~ 84 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRV-RLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-DS 84 (456) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCC-Cc Confidence 111111111110000000 011111111110 00111101 1113355778899999998888888763221 11 Q ss_pred ceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EE Q lcl|Aclame:pro 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PM 147 (419) Q Consensus 74 ~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~ 147 (419) . ....+..++. + | ....+...+..+++.+|.||+++..+..|.+. +..++|..+.+.++.... +. T Consensus 85 ~---~~~~~~~i~~-~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) T protein:vir:10 85 D---LALRARRIWR-D-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMR 155 (456) T ss_pred c---hHHHHHHHHH-h-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEcCCCCcceEEEEE Confidence 1 1122334443 2 2 23345667889999999999999888888653 566777777666653320 11 Q ss_pred EEee-c----------------------------cccc--------ccceEEEecCC----CCCCcccccHHHHHHHHHH Q lcl|Aclame:pro 148 YRVA-G----------------------------ADPL--------PQRLVHHVRWM----SINGYTGLSPVLLHANAIG 186 (419) Q Consensus 148 ~~~~-~----------------------------~~~~--------~~~~i~~~~~~----~~~~~~G~s~~~~~~~~i~ 186 (419) ++.. + .... .....+|.-.. +.+...|+|.+......++ T Consensus 156 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liD 235 (456) T protein:vir:10 156 WWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIIN 235 (456) T ss_pred EEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHH Confidence 1100 0 0000 00001111000 0122367888877777666 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH--HHHHHHHHHhccccccCcceecCCCceeeecCcChhhHH Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD--RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAA 264 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~ 264 (419) ....+..-........+.|..++.-....... .++.-+ .....|.. ..+.++.++++.++.++..... .. T Consensus 236 a~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~-~d~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~q~~~~~~-~~ 307 (456) T protein:vir:10 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPN-VDENGNAIDYASIFEA------APGALWELPPGVDIWESQANDF-TP 307 (456) T ss_pred HHHHHHHHHHHHHHHhhhHhHhhhccCccccc-ccccccccchhhhhhh------hccccccCCCCcceEEecccCh-hH Confidence 65544443333333334444343211100000 000000 11112221 1245777889999887764432 24 Q ss_pred HHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhcc------Chhhh--hhhhh Q lcl|Aclame:pro 265 LIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLL------LPSER--KQYFI 336 (419) Q Consensus 265 ~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll------~~~~~--~~~~~ 336 (419) +.+.++..+.+|++.=++|+..+|...+ |. ...-..+....+.-.+...+..|...|- ....+ ....+ T Consensus 308 ~~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~---Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~ 383 (456) T protein:vir:10 308 MLSAIKEHIRQLSSATKTPLPMLMPDSA-NQ---SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) T ss_pred HHHHHHHHHHHHHhccCCChHHhccccc-Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccce Confidence 7888999999999999999999875321 21 1111222222333333333333222110 00111 11223 Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccC-CCCCCccccccchh Q lcl|Aclame:pro 337 EYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPM-GKTEPTKAALDEIG 415 (419) Q Consensus 337 ~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~e~~ 415 (419) ...+......+..+.++.+.++..+|+++..-+++++|+.+-+- .+ ...+....... .-.+..+.+..++. T Consensus 384 ~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i-~~-------~e~er~~~e~~~~~~~~~~~~~~~~~ 455 (456) T protein:vir:10 384 DVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI-KQ-------DDLDRAREQITLFAGNPVQRPQEDGS 455 (456) T ss_pred eEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHH-HH-------HHHHHHHHHHHHHhhhhhhcCCCCCC Confidence 33344455678889999999999999999999999999876310 00 00110000000 00111222223333 Q ss_pred c Q lcl|Aclame:pro 416 R 416 (419) Q Consensus 416 ~ 416 (419) | T Consensus 456 ~ 456 (456) T protein:vir:10 456 R 456 (456) T ss_pred C Confidence 3 No 151 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=98.62 E-value=8.8e-08 Score=59.27 Aligned_cols=385 Identities=11% Similarity=0.007 Sum_probs=177.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc--ccccccCH-----HHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVTP-----ASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (419) ..+..++.+......+.- ..+....-+... ........ ..-..+.....+|+..++.+-.-|+.+.... +. T Consensus 7 ~~~~~~l~~~~~~~~~r~-~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~~~~~~~~~-d~ 84 (456) T protein:vir:10 7 AEWLPVLTKRIDDGMSRV-RLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-DS 84 (456) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCchhcCcccChhhhhhhhhhhcchHHHHHHHHHhhhccCCeecCCCC-Cc Confidence 111111111110000000 011111111110 00111101 1113355778899999998888888763221 11 Q ss_pred ceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EE Q lcl|Aclame:pro 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PM 147 (419) Q Consensus 74 ~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~ 147 (419) . ....+..++. + | ....+...+..+++.+|.||+++..+..|.+. +..++|..+.+.++.... +. T Consensus 85 ~---~~~~~~~i~~-~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~~-i~~~~p~~~~~i~d~~~~~~~~~~i~ 155 (456) T protein:vir:10 85 D---LALRARRIWR-D-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTAT-ITADSPETMVVSVDPLQPWRIRAAMR 155 (456) T ss_pred c---hHHHHHHHHH-h-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCceE-EEEEccceeEEEEcCCCCcceEEEEE Confidence 1 1122334443 2 2 23345667889999999999999888888653 566777777666653320 11 Q ss_pred EEee-c----------------------------cccc--------ccceEEEecCC----CCCCcccccHHHHHHHHHH Q lcl|Aclame:pro 148 YRVA-G----------------------------ADPL--------PQRLVHHVRWM----SINGYTGLSPVLLHANAIG 186 (419) Q Consensus 148 ~~~~-~----------------------------~~~~--------~~~~i~~~~~~----~~~~~~G~s~~~~~~~~i~ 186 (419) ++.. + .... .....+|.-.. +.+...|+|.+......++ T Consensus 156 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~vi~liD 235 (456) T protein:vir:10 156 WWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIIN 235 (456) T ss_pred EEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhhHHHHH Confidence 1100 0 0000 00001111000 0122367888877777666 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHH--HHHHHHHHHhccccccCcceecCCCceeeecCcChhhHH Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVD--RITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAA 264 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~ 264 (419) ....+..-........+.|..++.-....... .++.-+ .....|.. ..+.++.++++.++.++..... .. T Consensus 236 a~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~-~d~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~q~~~~~~-~~ 307 (456) T protein:vir:10 236 RINRAELQLLSTMAIQAFRQRALKSTEHGLPN-VDENGNAIDYASIFEA------APGALWELPPGVDIWESQANDF-TP 307 (456) T ss_pred HHHHHHHHHHHHHHHhhhHhHhhhccCccccc-ccccccccchhhhhhh------hccccccCCCCcceEEecccCh-hH Confidence 65544443333333334444343211100000 000000 11112221 1245777889999887764432 24 Q ss_pred HHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhcc------Chhhh--hhhhh Q lcl|Aclame:pro 265 LIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDLL------LPSER--KQYFI 336 (419) Q Consensus 265 ~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ll------~~~~~--~~~~~ 336 (419) +.+.++..+.+|++.=++|+..+|...+ |. ...-..+....+.-.+...+..|...|- ....+ ....+ T Consensus 308 ~~~~l~~~i~~~~~~s~~p~~~~~~~~~-N~---Sg~Ai~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~~ 383 (456) T protein:vir:10 308 MLSAIKEHIRQLSSATKTPLPMLMPDSA-NQ---SAEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) T ss_pred HHHHHHHHHHHHHhccCCChHHhccccc-Ch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccce Confidence 7888999999999999999999875321 21 1111222222333333333333222110 00111 11223 Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccC-CCCCCccccccchh Q lcl|Aclame:pro 337 EYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPM-GKTEPTKAALDEIG 415 (419) Q Consensus 337 ~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~e~~ 415 (419) ...+......+..+.++.+.++..+|+++..-+++++|+.+-+- .+ ...+....... .-.+..+.+..++. T Consensus 384 ~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i-~~-------~e~er~~~e~~~~~~~~~~~~~~~~~ 455 (456) T protein:vir:10 384 DVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQI-KQ-------DDLDRAREQITLFAGNPVQRPQEDGS 455 (456) T ss_pred eEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHH-HH-------HHHHHHHHHHHHHhhhhhhcCCCCCC Confidence 33344455678889999999999999999999999999876310 00 00110000000 00111222223333 Q ss_pred c Q lcl|Aclame:pro 416 R 416 (419) Q Consensus 416 ~ 416 (419) | T Consensus 456 ~ 456 (456) T protein:vir:10 456 R 456 (456) T ss_pred C Confidence 3 No 152 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.49 E-value=2.6e-07 Score=56.65 Aligned_cols=383 Identities=9% Similarity=0.014 Sum_probs=172.8 Q ss_pred CCccchhccc---ccccccccc-hHH---HHhhcC-CCcccccc------cCHHHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MFFSRQLLSN---LGQTQPGSG-GWV---SALLGS-ARSEAGQV------VTPASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~f~~~~~~~---~~~~~~~~~-~~~---~~~~~~-~~~~~~~~------~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) ||+.+-++.. .....+... ..+ ..+..+ ...+.... .-....+.......+++..|+.+..-|..+ T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~~~~~~~n~~k~i~~~~a~~l~~~p~~i 95 (496) T protein:vir:38 16 MGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKI 95 (496) T ss_pred hccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccccceeecchHHHHHHHHhhhhhCCcceE Confidence 4432221111 111111100 111 112221 11110000 001122334566778888888888777765 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP 146 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~ 146 (419) .-.++ .....+..++. .-...+....++.+...+|.+|+.+..+..|.+. +..++|..+-+.....+.. T Consensus 96 ~~~d~-----~~~e~l~~~~~-----~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~-i~~v~~~~~~P~~~~~~~~ 164 (496) T protein:vir:38 96 NIDDK-----AAEEFVLNVLK-----TNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVK-VSFATADCMYPLSNDSENV 164 (496) T ss_pred eeCCh-----HHHHHHHHHHh-----ccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcEE-EEEEcccceEEEEecCCcE Confidence 33211 11122333332 1244556677888899999999999888777643 3444555544322211100 Q ss_pred -------------------------------EEEee---ccc----c---------ccc---------ceEEEecCCC-- Q lcl|Aclame:pro 147 -------------------------------MYRVA---GAD----P---------LPQ---------RLVHHVRWMS-- 168 (419) Q Consensus 147 -------------------------------~~~~~---~~~----~---------~~~---------~~i~~~~~~~-- 168 (419) .+... ... . ..+ -.+++++.+- T Consensus 165 ~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~N 244 (496) T protein:vir:38 165 DECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRPTFIYIKPNIAN 244 (496) T ss_pred EEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcceEEEecCCccc Confidence 00000 000 0 000 1123333321 Q ss_pred ---CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEE-----eCCCCCchhhHHHHHHHHHHHHHHhccccc Q lcl|Aclame:pro 169 ---INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIE-----RPTDAPALKDQASVDRITDGWNAKFGGSGN 240 (419) Q Consensus 169 ---~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n 240 (419) .+...|+|.+.-+...++....+.....+.++. +.+..++. ......+. ... .+ ..... T Consensus 245 ~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~-~~~~i~v~~~~l~~~~~~~g~----~~~----~~----~~~~~ 311 (496) T protein:vir:38 245 NKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKL-GKKKVLVPSSFVKTAVNLDGS----TTQ----YF----DSTDE 311 (496) T ss_pred ccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhh-cccceecchHHhhccCCCCCc----ccc----CC----CCccc Confidence 223579999999999888887776666666665 34444431 11111100 000 00 00000 Q ss_pred cCcc---eecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHH--HH----------HHH Q lcl|Aclame:pro 241 AKKV---ALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEH--QS----------LQF 305 (419) Q Consensus 241 ~g~~---~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~--~~----------~~~ 305 (419) .... .-.+++..++.++.....-++.+..+...++|+...|+||..+|...++..+..+- .. ... T Consensus 312 ~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~~~~~~ 391 (496) T protein:vir:38 312 AFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHSQL 391 (496) T ss_pred eEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHHHHHHH Confidence 0001 11123345666666655667788888999999999999999998765543322221 11 112 Q ss_pred HHHHhhHHHHHHHHHHHhhc--cChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCCCCcc Q lcl|Aclame:pro 306 VIYTLLPWVKRHEQAKTRDL--LLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLE-NMPPVKGGD 382 (419) Q Consensus 306 ~~~~i~P~~~~i~~~l~~~l--l~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~l-Gl~p~~ggD 382 (419) ++.+|...+..+.. +.+.+ +.........+.+.++.-...|..+.++.+.+++.+|+++.-.++..+ |.+. +..+ T Consensus 392 ~~~~l~~l~~~il~-~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~~d-~ea~ 469 (496) T protein:vir:38 392 IEQGIKEMIVSILE-VGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNITE-AEAD 469 (496) T ss_pred HHHHHHHHHHHHHH-HHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCh-HHHH Confidence 22333333333321 11111 111111223345555555677888999999999999999998887654 4432 1121 Q ss_pred eeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 383 IYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 383 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) +-+. .+......+.....-....++|. T Consensus 470 ~el~-----ri~~E~~~~~~~~d~~~~~~~~e 496 (496) T protein:vir:38 470 EWAE-----MLAKEKQAEMPNNDMNGIFGEEE 496 (496) T ss_pred HHHH-----HHHHhhhccCccccccCCCCCCC Confidence 1110 00000000000000011111111 No 153 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=98.48 E-value=2.9e-08 Score=61.94 Aligned_cols=382 Identities=12% Similarity=0.030 Sum_probs=171.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCC--cccccccC-----HHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSAR--SEAGQVVT-----PASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (419) +.+.+++........+.- ..+.....+.. ...+.... ......+.....+|+..++.+-.-|+.+.... +. T Consensus 7 ~~~~~~l~~~~~~~~~r~-~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~~~~-d~ 84 (456) T protein:vir:79 7 AEWLPVLTKRIDDGMSRV-RLLARYSNGDAPLPELTRNTSAAWRSFQREARTNWGLMVRDSVADRIIPNGITVGGSA-DS 84 (456) T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhccCChhhcCcccChhhchhhhhhhcchHHHHHHHHHhhhccCCeecCCCC-Cc Confidence 111111111100000000 00111111110 00000010 01112345678899999988888888753211 11 Q ss_pred ceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce------eEE Q lcl|Aclame:pro 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL------KPM 147 (419) Q Consensus 74 ~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~------~~~ 147 (419) . ....+..++. + | ....+...+..+++.+|.||+++..+..|.+ .+..++|..+.+.++... .+. T Consensus 85 ~---~~~~~~~~~~-~-n---~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~ 155 (456) T protein:vir:79 85 D---LALRARRIWR-D-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRIRSAMR 155 (456) T ss_pred c---HHHHHHHHHH-h-c---ChhHHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEeccceeEEEEcCCCCCceEEEEE Confidence 1 1123444443 2 2 2335667788999999999999988888876 467778888776665321 011 Q ss_pred EEee-c-----------cc-------------------------ccccceEEEecCC----CCCCcccccHHHHHHHHHH Q lcl|Aclame:pro 148 YRVA-G-----------AD-------------------------PLPQRLVHHVRWM----SINGYTGLSPVLLHANAIG 186 (419) Q Consensus 148 ~~~~-~-----------~~-------------------------~~~~~~i~~~~~~----~~~~~~G~s~~~~~~~~i~ 186 (419) ++.. . .. ..+..++.|.... +.+...|+|.+......++ T Consensus 156 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v~~liD 235 (456) T protein:vir:79 156 WWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPHIDIIN 235 (456) T ss_pred EEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhhHHHHH Confidence 1100 0 00 0000111111100 0122357777777666665 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhh--HHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHH Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKD--QASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAA 264 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~ 264 (419) .......-........+.|..++.-........+ -..+. ..+.|.. ..+.++.+++|.++.++..... .. T Consensus 236 ~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~-~~~~~~~------~~~~~~~~~~~~~~~q~~~~~~-~~ 307 (456) T protein:vir:79 236 RINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAID-YASIFEA------APGALWELPPGVDIWESQTNDF-TP 307 (456) T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccc-hhhhhhh------hccccccCCCCcceeeecccCh-HH Confidence 5444333333333333333333321110000000 00011 1111211 1245777889999887764432 33 Q ss_pred HHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc------cChhhh--hhhhh Q lcl|Aclame:pro 265 LIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL------LLPSER--KQYFI 336 (419) Q Consensus 265 ~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l------l~~~~~--~~~~~ 336 (419) +.+.++....+|+..-++|+..+|...+ |.| ..-..+....+.-.+...+..|...| +....+ ....+ T Consensus 308 ~~~~l~~~i~~i~~~t~~p~~~~~~~~~-N~S---g~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i 383 (456) T protein:vir:79 308 MLSAIKEHIRQLSSATKTPLPMLMPDSA-NQS---AEGAHNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDTV 383 (456) T ss_pred HHHHHHHHHHHHHhhcCCChhHhccccc-CcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc Confidence 7888999999999999999999875321 211 11111222222222222222222111 001111 11223 Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC----CcceeeeccccccccccccccCCCCCCcccccc Q lcl|Aclame:pro 337 EYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK----GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALD 412 (419) Q Consensus 337 ~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~----ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 412 (419) +..+......+..+.++.+.+++.+|+++..-+++.+|+.+.+ ..++...-.+.. .+ +..+.++.+.+ T Consensus 384 ~v~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~i~~~e~~r~~~e~~~~-~~--~~~~~~~~~~~----- 455 (456) T protein:vir:79 384 DVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITLF-AG--NPVQRPQEDGS----- 455 (456) T ss_pred eEEeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-hh--hHhhcCCCCCC----- Confidence 3333344567788999999999999999998888999997641 111110000000 00 01111111111 Q ss_pred chhc Q lcl|Aclame:pro 413 EIGR 416 (419) Q Consensus 413 e~~~ 416 (419) + T Consensus 456 ---~ 456 (456) T protein:vir:79 456 ---R 456 (456) T ss_pred ---C Confidence 1 No 154 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.47 E-value=6.8e-09 Score=65.36 Aligned_cols=185 Identities=8% Similarity=-0.002 Sum_probs=95.2 Q ss_pred EEEeCCCCCch-hhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 208 VIERPTDAPAL-KDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHM 286 (419) Q Consensus 208 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 286 (419) |+++++-.... .+++++.+-.+.+ ..+++. .+.+.+...+-+|..++.+...+ .+........||++-|||... T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~-~~~~~~--~~~~~ld~~~e~~e~~~~~lsGl--~d~l~~~~~~iaa~s~iP~t~ 75 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQV-DNNSGV--GQAIGIDADSEEYNVLNSDIGGI--DTFLSQKFDRIVALSGIHEII 75 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHH-HHhhhh--hhhheeecCCcceeeeecCcCCh--HHHHHHHHHHHHhHhcCchhh Confidence 44443311100 0122222111111 333332 23455655667787777666543 456778889999999999886 Q ss_pred cccccCccc-ccHHHHHHHHHH-------HHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHH---- Q lcl|Aclame:pro 287 VNELERATF-SNIEHQSLQFVI-------YTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAA---- 354 (419) Q Consensus 287 ~g~~~~~~~-sn~e~~~~~~~~-------~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~---- 354 (419) +-+.+.+.. ++.+.-.++||. .-+.|.+.++-+ ++. ....|.|.+..+...+.++++++ T Consensus 76 LfG~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~-----~~~----~~~~~~~~f~pL~~~s~kekAei~~~~ 146 (201) T protein:vir:10 76 LKGKNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLP-----FIV----TEQEWSVEFNPLSQVSDKDKSEILEKN 146 (201) T ss_pred hcCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhc----CCCCceEeeCCCCCCCHHHHHHHHHHH Confidence 655444433 345555555554 334555554432 111 12245666677777787766654 Q ss_pred ---HHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 355 ---YAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 355 ---~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) +.+++.+|+++++|+|+.|--.+..+ +++-+.++.+...... ..+.+.++++ T Consensus 147 a~a~~~~~~~g~i~~~e~r~~L~~~~~~~----~~~~~~~~~~~~~~e~---~dp~~~~~~~ 201 (201) T protein:vir:10 147 VNSVAALIAAGIIDADEARDTLRAISTEV----KIGEGSIQTEVVINES---EDPLDVSANN 201 (201) T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCcC----CCCCCCCCcccccccc---CCCCCCCCCC Confidence 55588999999999999886655433 1222222211111111 1111222222 No 155 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=98.44 E-value=6.6e-07 Score=54.45 Aligned_cols=389 Identities=11% Similarity=-0.055 Sum_probs=162.9 Q ss_pred CC----------------ccchhcccccccccccchHHHHhhcCCCcc--cccccCHH---HHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MF----------------FSRQLLSNLGQTQPGSGGWVSALLGSARSE--AGQVVTPA---SALSLTVLQNCVTLLAESI 59 (419) Q Consensus 1 M~----------------f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~v~~~i~~ia~~i 59 (419) |. +..++.+......+.- ..+.....+-... .+..+.++ ......+...||+.+++.+ T Consensus 1 ~~~~~~~~~~gl~~~~~~~~~~L~~~~~~~~~~~-~~~~~Yy~G~~~~~~~~~~~p~~~r~~~~v~nw~~~~Vd~~a~rl 79 (474) T protein:vir:81 1 MIQQQTVRIPSLSNDENALINGLLAQIENLRWKN-LLRTSYYENKRTIQYVGTLIPPQYFNLGLVLGWTGKAVDALARRC 79 (474) T ss_pred CcCCCcCcCCCCChhHHHHHHHHHHHHHHHhhHH-HHHHHHhccCCChhhccccccHHHHHHHhhcChHHHHHHHHHhhh Confidence 11 0010100000000000 0011111111110 11111111 0122455667777777765 Q ss_pred ccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce-EEEEEecCceeEE Q lcl|Aclame:pro 60 AQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI-QGLYPLDNEAVTV 138 (419) Q Consensus 60 a~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~-~~l~~~~~~~v~~ 138 (419) .--.|.+- ++.. ....+..++ .+.+ .......+..+.+.+|+||+.+.....|.+ ..+.+++|..+.. T Consensus 80 ~~~Gf~~~----d~~~--~~~~l~~iw-~~N~----ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~ 148 (474) T protein:vir:81 80 NLEGFVWP----DGDL--DSLGGTEVV-DDNH----LLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATG 148 (474) T ss_pred cccceECC----CCCc--cchHHHHHH-HhcC----hhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEE Confidence 54444431 1111 112233444 2332 223566778899999999999988777764 4567888888876 Q ss_pred EEccceeE-------------------EEEeecc---------c----------ccccceEEEecCC-CCCCcccccHH- Q lcl|Aclame:pro 139 MKGPDLKP-------------------MYRVAGA---------D----------PLPQRLVHHVRWM-SINGYTGLSPV- 178 (419) Q Consensus 139 ~~~~~~~~-------------------~~~~~~~---------~----------~~~~~~i~~~~~~-~~~~~~G~s~~- 178 (419) .++..... ..|..+. . .+.- .++++.++ ..+..+|.|.+ T Consensus 149 ~~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gv-PvV~~~n~~~~~~~~G~s~i~ 227 (474) T protein:vir:81 149 EWNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGV-PAQVLPYKPAPKRPFGQSRIT 227 (474) T ss_pred EEeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCc-ceEEecccccccCcCCccccc Confidence 66532110 0000000 0 0000 13333333 34455787754 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHccCCCceEEE-eCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceee Q lcl|Aclame:pro 179 ---LLHANAIGHAQAIQQYAGKSFMNGTALSGVIE-RPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFK 254 (419) Q Consensus 179 ---~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~ 254 (419) ..+.+.+.....-......+ .+.|.-++. .......+.+.+....++......+.-..+...-+....+.++. T Consensus 228 e~v~~l~da~~r~~~~~~~~~e~---~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~ 304 (474) T protein:vir:81 228 KPMMGLQDAGVRELARREGHMDV---FSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQLARADVK 304 (474) T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---hcchhheeecCChhhcccccccccchhhhhHHHHhcCCCccccccccccccccc Confidence 33334433333333333333 344444442 11100001111223344444333322221111112222345666 Q ss_pred ecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHH---HHHHHHHhhHHHHHHHHHHHhh----ccC Q lcl|Aclame:pro 255 PLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQS---LQFVIYTLLPWVKRHEQAKTRD----LLL 327 (419) Q Consensus 255 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~---~~~~~~~i~P~~~~i~~~l~~~----ll~ 327 (419) ++....- ..|.+..+.....||..-++|+..+|.....|-++.+... ..+... +.-....+.+.+.+- +.. T Consensus 305 q~~~a~l-~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~k-ae~k~~~fg~~l~~~~rla~~i 382 (474) T protein:vir:81 305 QFPAASP-DAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAE-AEGAVDDFTPALRKAFIRALAM 382 (474) T ss_pred ccCCCCh-hHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH Confidence 6654332 2378899999999999999999999866444433333222 121111 111111122222211 100 Q ss_pred hh-----h--hhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCC--cCHHHHHHHhCCCCCC---Ccceeeeccccccccc Q lcl|Aclame:pro 328 PS-----E--RKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGW--LSINDIRRLENMPPVK---GGDIYLSPMNMVDASK 395 (419) Q Consensus 328 ~~-----~--~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~--~T~NE~R~~lGl~p~~---ggD~~~~~~n~~~~~~ 395 (419) .. . .....+...+......+..+.+..+.+++.+|. .+..=+++++|+.+-+ +.+.-..-....+++. T Consensus 383 ~~~~~~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~ 462 (474) T protein:vir:81 383 KNKVAIDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQA 462 (474) T ss_pred hCCCCccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHH Confidence 00 0 011223333334556788899999999998873 3445568889998642 1111000001111111 Q ss_pred cccccCCCCCCcc Q lcl|Aclame:pro 396 PQPIPMGKTEPTK 408 (419) Q Consensus 396 ~~~~~~~~~~~~~ 408 (419) .... ..+.+.++ T Consensus 463 l~~~-~~~~~~aq 474 (474) T protein:vir:81 463 LIDR-SNNGATAQ 474 (474) T ss_pred HHhc-CCCCCCCC Confidence 1100 00111111 No 156 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.43 E-value=7e-07 Score=54.31 Aligned_cols=364 Identities=11% Similarity=-0.024 Sum_probs=171.6 Q ss_pred hhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHH Q lcl|Aclame:pro 25 LLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQ 104 (419) Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~ 104 (419) +++.......... ...........+|+.+++.+--..|.+ .++. ....+..++. + | ........+. T Consensus 1 ~l~~~~~~~~~~~--~~~~v~n~~~~ivd~~~~~l~~~gf~~----~d~~---~~~~~~~i~~-~-N---~~d~~~~~~~ 66 (434) T protein:vir:98 1 MLPKNAEQAFLDF--QRKARTNFCGLIANASVHRLLALGVTG----PDGE---PDTRASRWWQ-A-N---RLDSRQKLVW 66 (434) T ss_pred CCCCCccHHHHHh--hhhhhccchHHHHHHHHhhhccCceec----CCCc---hHHHHHHHHH-h-c---ChhHHHHHHH Confidence 1111111100000 000122356677777777554333432 1211 1223444443 2 2 3334666788 Q ss_pred HHHHHcCCeeEEEeecCCCce------EEEEEecCceeEEEEccce-----eEEEEe-------------ecc------- Q lcl|Aclame:pro 105 VAVGLRGNSYSFIDRDQDGVI------QGLYPLDNEAVTVMKGPDL-----KPMYRV-------------AGA------- 153 (419) Q Consensus 105 ~~~l~~G~~~~~i~~~~~G~~------~~l~~~~~~~v~~~~~~~~-----~~~~~~-------------~~~------- 153 (419) .+.+.+|.||+++.++..+.. ..+..++|..+.+.++... .+.++. .+. T Consensus 67 ~~a~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (434) T protein:vir:98 67 RMAMAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSFPYRTR 146 (434) T ss_pred HHHhhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEEEEEEe Confidence 999999999999987654432 2366778888776665421 011100 000 Q ss_pred -----c--------------------ccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceE Q lcl|Aclame:pro 154 -----D--------------------PLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGV 208 (419) Q Consensus 154 -----~--------------------~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~ 208 (419) . .+..=.|+++.+++...-.|.|.+......++....+........+-.+.|..+ T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~~g~sd~e~vi~liDa~~~~~s~~~~~~~~~a~p~~~ 226 (434) T protein:vir:98 147 ERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGEDPEPEFAGVLDIQDRVNLGILNRMAASRFSGFRQKW 226 (434) T ss_pred eccccccccccccceecccccccccCCCCccceEEeccCCCcCcCCcchhhhHHHHHHHHHHHHHHHHHHHHHhcchhhh Confidence 0 000011444444443334689988888888888777766666666666667666 Q ss_pred EEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc Q lcl|Aclame:pro 209 IERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV 287 (419) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~ 287 (419) +.-.. ..+..++. ......+ +.+... .++++.++ ++.++.++.....+ .+.+.++..+.+|+..=++|+..+ T Consensus 227 i~G~~--~~~~~~~~-~~~~~~~-~~~~~~--~~~i~~~~~~~~~~~q~~~~~~~-~~~~~l~~~i~~~~~~~~~p~~~~ 299 (434) T protein:vir:98 227 IKGHK--FAKRTDPA-TGMTVVD-QPFVPS--PSAVWASEGENTQFGQLDATDLS-GFLKEHASDVRDMLTISQTPTYLY 299 (434) T ss_pred hcCCC--cccccccc-cccchhh-hhhhcc--ccccccCCCCCceEEEecCcchH-HHHHHHHHHHHHHhcccCCCHHHh Confidence 54211 01101110 0111111 111211 23466665 46788777654332 377788889999999999999999 Q ss_pred ccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc------cChhhh---hhhhhhhhhhhhhhccHHHHHHHHHHH Q lcl|Aclame:pro 288 NELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL------LLPSER---KQYFIEYNLAGLLRGDQSSRYAAYAVG 358 (419) Q Consensus 288 g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l------l~~~~~---~~~~~~fd~~~~~~~d~~~~~~~~~~~ 358 (419) |... + |....-..+....+.-.+...+..|...| .....+ ....+.+.+......+..+.++.+.++ T Consensus 300 ~~~~--~--n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~kl 375 (434) T protein:vir:98 300 ATDL--V--NISADTIGALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAATKL 375 (434) T ss_pred cccc--C--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHHHH Confidence 7421 1 11112222233333333333333222211 001111 112233334456677889999999999 Q ss_pred HhCCCcCHHHHHHHhCCCCCCC---cceeee-ccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 359 RQWGWLSINDIRRLENMPPVKG---GDIYLS-PMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 359 ~~~g~~T~NE~R~~lGl~p~~g---gD~~~~-~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) +..|+ +..-+++.+|+++-+- .++--. .............+.++..+.+++..-+ T Consensus 376 ~~~g~-~~e~~~~~lg~~~~e~~r~~~e~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 376 KSIGY-PLDVIAEELDESPARVRRIVAGAASQALLAASLLPAPGAPSAGNVPDSGGAVDG 434 (434) T ss_pred HhcCC-cHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCcccCCCCC Confidence 88775 7778888999876321 000000 0000000000000101111111111111 No 157 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.39 E-value=9.1e-07 Score=53.70 Aligned_cols=397 Identities=11% Similarity=-0.029 Sum_probs=155.9 Q ss_pred CC-ccch----hcccccccccccchHHHHh-----------------hcCCC--cccccccCHH---HHhccHHHHHHHH Q lcl|Aclame:pro 1 MF-FSRQ----LLSNLGQTQPGSGGWVSAL-----------------LGSAR--SEAGQVVTPA---SALSLTVLQNCVT 53 (419) Q Consensus 1 M~-f~~~----~~~~~~~~~~~~~~~~~~~-----------------~~~~~--~~~~~~~~~~---~~~~~~~v~~~i~ 53 (419) |- ..+- ..+..+. .+....++..+ .-+-. ...+..+..+ ......+...+|+ T Consensus 1 ~~~~~~~~~~~~~~~~~l-~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~i~~~~~~~p~~~~~~~~v~n~~~~iVd 79 (504) T protein:vir:99 1 MTEETTSASKFTFRIPEL-NDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYAIRQIGNLIPPEYLRTATVLGWSAKAVD 79 (504) T ss_pred CCccCCcccccccccCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccchhccccccHHHHHHhhccCcHHHHHH Confidence 11 0000 0000000 00000111111 11110 0011111111 1112233455667 Q ss_pred HHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceE-EEEEec Q lcl|Aclame:pro 54 LLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQ-GLYPLD 132 (419) Q Consensus 54 ~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~-~l~~~~ 132 (419) .+++.+.--.|.+ . ++. .....+..++ ...+ .......+..+.+.+|.||+++..+..|.+. -+.+++ T Consensus 80 ~~a~rl~~~Gf~~---~-d~~--~~~~~l~~i~-~~N~----ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~s 148 (504) T protein:vir:99 80 TLARRCNLESFVW---P-DGD--YGSIGGPDVW-DENF----FATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKS 148 (504) T ss_pred HHHhhhccceeeC---C-CCC--hhhHHHHHHH-HhcC----hhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEec Confidence 7666443333332 1 111 1112233333 2222 2345678888999999999999888888764 567788 Q ss_pred CceeEEEEcccee-----EEEE--------------eecc-ccc--------cc--------ceEEEecCCC-CCCcccc Q lcl|Aclame:pro 133 NEAVTVMKGPDLK-----PMYR--------------VAGA-DPL--------PQ--------RLVHHVRWMS-INGYTGL 175 (419) Q Consensus 133 ~~~v~~~~~~~~~-----~~~~--------------~~~~-~~~--------~~--------~~i~~~~~~~-~~~~~G~ 175 (419) |..+.+.++.... +.++ ..+. .++ .. =.|+++.+++ ....+|. T Consensus 149 P~~~~~iyD~~~~~~~~a~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~ 228 (504) T protein:vir:99 149 AMQATGEWNSRRNAMDSLLSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGS 228 (504) T ss_pred cceeEEEEeCCCCceeEEEEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCc Confidence 8888776654210 0000 0000 000 00 0133333332 3446777 Q ss_pred cHHH----HHHHHHHHHHHHHHHHHHHHHccCCCceEEE-eCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCC Q lcl|Aclame:pro 176 SPVL----LHANAIGHAQAIQQYAGKSFMNGTALSGVIE-RPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEG 250 (419) Q Consensus 176 s~~~----~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g 250 (419) |.+. .+.+.+.....-......+ .+.|..++. .........+......++......+.-+++.-..+.-..+ T Consensus 229 sei~~~v~~l~Da~~~~~~~~~~~~e~---~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 305 (504) T protein:vir:99 229 SRITRPVMSLQQRALKGCIRMDGHADV---YSFPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARAR 305 (504) T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH---hcchhhhhccCCccccccccccccchhhhhhhhhhcCCCccccccccCcc Confidence 7543 3333333332222222333 233333332 1100000001111222232222221111111111111234 Q ss_pred ceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHH----HHHHHHhh-- Q lcl|Aclame:pro 251 MKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKR----HEQAKTRD-- 324 (419) Q Consensus 251 ~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~----i~~~l~~~-- 324 (419) .++.++....-+ .+.+.++....+||..=++|+..+|.....+-++.+... +....+.-.+.. +.+.+.+- T Consensus 306 ~~~~q~~~~~l~-~~~~~l~~~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~--~~~~~L~~ka~~k~~~f~~~l~~~~r 382 (504) T protein:vir:99 306 ADVKQFPASSPQ-PHIEMLEQIAMMFSGETSIPVESLGFSNRANPTSADAYI--ASREDLIAEAEGATDDWSPAFRRSMI 382 (504) T ss_pred ceeeecCCCChH-HHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 566666544322 478899999999999999999999866543333322222 222323322222 22222221 Q ss_pred ----ccChhh---hhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcC---HHHHHHHhCCCCCC---C--------c-- Q lcl|Aclame:pro 325 ----LLLPSE---RKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLS---INDIRRLENMPPVK---G--------G-- 381 (419) Q Consensus 325 ----ll~~~~---~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T---~NE~R~~lGl~p~~---g--------g-- 381 (419) +..... .....+.+.+......+..+.++.+.+++.+|... ..-+++++|+.+-+ . + T Consensus 383 la~~~~~~~~~~~~~~~~~~v~w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~ 462 (504) T protein:vir:99 383 RALAIKNGLDRIPPEWKTIDSKFRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVS 462 (504) T ss_pred HHHHHhcCCCccccccccceeEecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHH Confidence 000000 01122333344556678889999999999888532 23455677887532 0 0 Q ss_pred --ceeeeccccccccc-----c-ccccCCCCCCccccccchh Q lcl|Aclame:pro 382 --DIYLSPMNMVDASK-----P-QPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 382 --D~~~~~~n~~~~~~-----~-~~~~~~~~~~~~~~~~e~~ 415 (419) |.+.-..+....+. + .......+..+....+..| T Consensus 463 ~~~~l~~~~~~~~~~~~~~~~~~~e~a~~~~~~~~~~p~~~~ 504 (504) T protein:vir:99 463 IIEALNRRQQEAATAGEDQDQGAGEPPANEPPAALGRPTLVG 504 (504) T ss_pred HHHHHhcccCCCCCCCCCCCcCCCCCCCCCCCccCCCcccCC Confidence 00111111000000 0 0000000001111111111 No 158 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.38 E-value=9.3e-07 Score=53.66 Aligned_cols=337 Identities=10% Similarity=0.034 Sum_probs=153.9 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc--ccccccCHH---HH-hccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVTPA---SA-LSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~-~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) +.+.+.. +......+.- ..+..+..+-.. ..+..+-++ .+ +-..+...+|+.+|+.+.=-.|. . T Consensus 4 ~~i~~L~-~~~~~~~~r~-~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~-----~--- 73 (409) T protein:vir:94 4 KGIGYLR-FKLSVHKRRA-EMRYDQYAMKYVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFE-----N--- 73 (409) T ss_pred HHHHHHH-HHHHHHhHHH-HHHHHHhcccCchhhcChhhhHHHHHHHhhhcchhHHHHHHhHhhcccCccc-----C--- Confidence 1111111 1111111100 011111111111 011111111 00 12345566777766643222221 1 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-----EEEE Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-----PMYR 149 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-----~~~~ 149 (419) ....+..++. .. +.......+..+.+.+|+||+.+..+..|.+ .+.+++|..+.+.++.... +.+. T Consensus 74 ---~d~~l~~i~~-~N----~ld~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~a~~~~ 144 (409) T protein:vir:94 74 ---DDFTVNEIFE-EN----NPDIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTEGYAVL 144 (409) T ss_pred ---CchHHHHHHH-hc----ChhHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceeeeEEEE Confidence 1123444442 22 2234556788899999999999998888875 5778888888776654321 0000 Q ss_pred eec--c------ccccc---------------------ceEEEecCC-CCCCcccccHH----HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 VAG--A------DPLPQ---------------------RLVHHVRWM-SINGYTGLSPV----LLHANAIGHAQAIQQYA 195 (419) Q Consensus 150 ~~~--~------~~~~~---------------------~~i~~~~~~-~~~~~~G~s~~----~~~~~~i~~~~~~~~~~ 195 (419) ..+ . .+.+. =.++++.+. .....+|.|.+ ..+.+.+.....-.... T Consensus 145 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~ 224 (409) T protein:vir:94 145 ERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVT 224 (409) T ss_pred EecCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHH Confidence 000 0 00000 013333333 23456787754 33334444333333333 Q ss_pred HHHHHccCCCceEEE-eCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-----CCceeeecCcChhhHHHHHHH Q lcl|Aclame:pro 196 GKSFMNGTALSGVIE-RPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-----EGMKFKPLSMTNVDAALIDAL 269 (419) Q Consensus 196 ~~~~~ng~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~ 269 (419) ..+ .+.|.-++. .+. +.+..+.++.... +++.++ ++.++.++....-+ .+.+.. T Consensus 225 ~e~---~a~pqr~i~G~d~------d~~~~~~~~~~~~----------~i~~~~~d~dg~~~~v~q~~~~~l~-~~~~~l 284 (409) T protein:vir:94 225 AEF---YSFPQKYVTGLSD------DAEPMETWKATVS----------SMLQFTKDEDGDKPTLGQFTQPSMS-PFTEQL 284 (409) T ss_pred HHH---hcChhheeEecCC------CCcccchhhhhHH----------HhhcCCCCCCCCCceEEecCCCChh-HHHHHH Confidence 333 445554443 221 1122333433322 244443 34567666543322 488999 Q ss_pred HHHHHHHHHHhcCCHHHcccccCc--ccccHHHHHHHHHHHHhhHHHHHHHHHHHh------hccC-----hhhhhhhhh Q lcl|Aclame:pro 270 RLSALDIARIYKIPAHMVNELERA--TFSNIEHQSLQFVIYTLLPWVKRHEQAKTR------DLLL-----PSERKQYFI 336 (419) Q Consensus 270 ~~~~~~Ia~~fgvpp~~~g~~~~~--~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~------~ll~-----~~~~~~~~~ 336 (419) +....++|..-++|+..+|..... +...+..+...+...+- -....+.+.+.+ .+.. +.+.....+ T Consensus 285 ~~~~~~~a~~t~lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a~-~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v 363 (409) T protein:vir:94 285 RTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGR-KAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKP 363 (409) T ss_pred HHHHHHHhhhcCCCHHHhccccCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCccccccccceE Confidence 999999999999999999875431 11112222221111110 011111111111 0111 111111222 Q ss_pred hhhhhhhh---hccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 337 EYNLAGLL---RGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK 379 (419) Q Consensus 337 ~fd~~~~~---~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~ 379 (419) .| .... ..+....++.+.+++.+| +...+-+++++|+..-+ T Consensus 364 ~W--~p~~~~~~~~~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 364 KW--EPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred Ee--ccCCCcchHHHHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 22 2222 223456677889999998 66778999999998877 No 159 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.31 E-value=1.4e-06 Score=52.65 Aligned_cols=392 Identities=12% Similarity=0.034 Sum_probs=164.1 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc--ccccccCH---HHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcce Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVTP---ASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRK 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~ 75 (419) +...+.. .......+.- ..+....-+-.. .....+.. ...........+|+.++..+--..|.+ .++.. T Consensus 16 ~~~~~l~-~~~~~~~~r~-~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~---~~~~~- 89 (485) T protein:vir:10 16 IARDEMV-SAFEDSTQNL-KTNTSYYEAERRPEAIGVTVPIQMQSLLAHVGYPRLYVDSIAERQAVEGFRF---GDADE- 89 (485) T ss_pred HHHHHHH-HHHHHHHHHH-HHHHHHHhcCCcchhcCCCCChhhhhhhhhcCcHHHHHHHHHhhhcccceec---CCCch- Confidence 1111111 0000000000 011111111110 00111111 111123455677777776653334432 11111 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCc-------eEEEEEecCceeEEEEcccee--- Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGV-------IQGLYPLDNEAVTVMKGPDLK--- 145 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~-------~~~l~~~~~~~v~~~~~~~~~--- 145 (419) ....+..++. +. ....+...+..+++.+|.||+++.++..+. ...+.+++|..+.+.++.... T Consensus 90 --~~~~~~~i~~-~N----~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~ 162 (485) T protein:vir:10 90 --ADEELWQWWQ-AN----NLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIGRVS 162 (485) T ss_pred --hHHHHHHHHH-hc----CHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcCCCCcee Confidence 1122334442 21 334577788999999999999998775432 224667778777766653211 Q ss_pred --EEEEee--c---------------------cc---------ccccceEEEecCCC-CCCcccccHHHH-HHHHHHHHH Q lcl|Aclame:pro 146 --PMYRVA--G---------------------AD---------PLPQRLVHHVRWMS-INGYTGLSPVLL-HANAIGHAQ 189 (419) Q Consensus 146 --~~~~~~--~---------------------~~---------~~~~~~i~~~~~~~-~~~~~G~s~~~~-~~~~i~~~~ 189 (419) +.++.. + .. .+..=.|+++.+++ ..+.+|.|.+.. +...++... T Consensus 163 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~ 242 (485) T protein:vir:10 163 KAIRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAA 242 (485) T ss_pred EEEEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHH Confidence 000000 0 00 00001234444332 345678886643 333344333 Q ss_pred HHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecCcChhhHHHHH Q lcl|Aclame:pro 190 AIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMTNVDAALID 267 (419) Q Consensus 190 ~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e 267 (419) ...........-.+.|..++.-... .....++... ..|+. ..++++.++ ++.++.++.....+ .+++ T Consensus 243 ~~~s~~~~~~~~~a~p~~~i~G~~~~~~~~~~~~~~----~~~~~------~~~~i~~~~~~d~k~~q~~~~~~~-~~~~ 311 (485) T protein:vir:10 243 RILMLMQATAELMGVPQRLIFGIKPEEIGVDPETGQ----TLFDA------YLARILAFEDAEGKIQQFSAAELA-NFTN 311 (485) T ss_pred HHHHHHHHHHHhhcchHHHHhcCCcccccccccccc----hhhhh------cccceeccCCCCceEEeecccchH-HHHH Confidence 3333333333334445444431100 0000000001 11111 124566665 56788777654433 3778 Q ss_pred HHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc----------cChhh--hhhhh Q lcl|Aclame:pro 268 ALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL----------LLPSE--RKQYF 335 (419) Q Consensus 268 ~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l----------l~~~~--~~~~~ 335 (419) ..+....+|+..=++|+..+|.... |.++.++.. +....+.-.+.+.+..|...| ..... ..... T Consensus 312 ~l~~~i~~~~~~~~~p~~~fg~~~~-n~~Sg~Al~--~~~~~l~~k~~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~ 388 (485) T protein:vir:10 312 ALDQIAKQVAAYTGLPPQYLSTAAD-NPASAEAIR--AAESRLIKKVERKNSIFGGAWEEAMRLAYRMMKGGDVPPDMLR 388 (485) T ss_pred HHHHHHHHHhcccCCCHHHhccccC-chhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccee Confidence 8888899999999999999875432 211111111 111122111222221111111 00000 01123 Q ss_pred hhhhhhhhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC--Ccceeee--------ccccc-cccccccccCC Q lcl|Aclame:pro 336 IEYNLAGLLRGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK--GGDIYLS--------PMNMV-DASKPQPIPMG 402 (419) Q Consensus 336 ~~fd~~~~~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~--ggD~~~~--------~~n~~-~~~~~~~~~~~ 402 (419) +.+.+......+..+.++.+.+++.+| +++..-+++.+|+.+-+ ......- ..+.. ......+.+.. T Consensus 389 i~v~w~~~~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~ 468 (485) T protein:vir:10 389 METVWRDPSTPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLIGTMVDPNPTVPGSPS 468 (485) T ss_pred eeEEecCCCCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC Confidence 444444556778899999999998866 88999999999997642 1110000 00000 00000000001 Q ss_pred CCCCccccccchhcccC Q lcl|Aclame:pro 403 KTEPTKAALDEIGRILS 419 (419) Q Consensus 403 ~~~~~~~~~~e~~~~~~ 419 (419) ..+..+++..+.+.=-| T Consensus 469 ~~~~~~~~~~~~~~~~~ 485 (485) T protein:vir:10 469 PAPAPKPAALESGGDAA 485 (485) T ss_pred ccccccCcCCCCCCCCC Confidence 11111111122222222 No 160 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=98.25 E-value=2e-06 Score=51.80 Aligned_cols=390 Identities=10% Similarity=-0.003 Sum_probs=175.5 Q ss_pred CCccchhcccccccccccchHHHHh---------------hcCCCc----------cccccc----CHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSAL---------------LGSARS----------EAGQVV----TPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~----------~~~~~~----~~~~~~~~~~v~~~ 51 (419) |.+....++............+..+ ..+-.. .....+ .+..-+.++....+ T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~~~ri~~n~~~~i 92 (503) T protein:vir:59 13 EELNEIIVESAKEIAEPDTTMIQKLIDEHNPEPLLKGVRYYMCENDIEKKRRTYYDAAGQQLVDDTKTNNRTSHAWHKLF 92 (503) T ss_pred HhHHHhhhhhhhhccchhHHHHHHHHHhhcHHHHHHHHHHhccccchhhccchhcccccccccccccccceeecchHHHH Confidence 2222211111111111111111111 110000 000000 00111235667889 Q ss_pred HHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 52 VTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) |+..+..+-+-|+++...++ .....+ ..+.. | ........+..+.+.+|.+|+++..+..|.+. +..+ T Consensus 93 vd~~~~yl~g~~~~~~~~d~-----~~~~~l-~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~~-i~~~ 160 (503) T protein:vir:59 93 VDQKTQYLVGEPVTFTSDNK-----TLLEYV-NELAD--D---DFDDILNETVKNMSNKGIEYWHPFVDEEGEFD-YVIF 160 (503) T ss_pred HHHHHhhhhcCCeeeccCcH-----HHHHHH-HHHHh--c---CHHHHHHHHHHHHhhCCeEEEEEeecCCCceE-EEEE Confidence 99999999888887632111 111112 22221 2 34556677888999999999999988888764 6677 Q ss_pred cCceeEEEEccce--e----EEEEe-ecc--------cccccceEEEe-------------------------------c Q lcl|Aclame:pro 132 DNEAVTVMKGPDL--K----PMYRV-AGA--------DPLPQRLVHHV-------------------------------R 165 (419) Q Consensus 132 ~~~~v~~~~~~~~--~----~~~~~-~~~--------~~~~~~~i~~~-------------------------------~ 165 (419) +|..+.+..+... . +.++. ... ....++.+++. . T Consensus 161 ~p~~~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (503) T protein:vir:59 161 PAEEMIVVYKDNTRRDILFALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWG 240 (503) T ss_pred ccceeEEEEeCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCC Confidence 7777766554321 0 11110 000 00000111000 0 Q ss_pred CCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhcccccc Q lcl|Aclame:pro 166 WMS----INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNA 241 (419) Q Consensus 166 ~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~ 241 (419) ..| .+...|.|.+..+...++....+.....+.+...+.|-.+++-- .++..++....++ . T Consensus 241 ~vPiv~~~nn~~~~sd~~~~~~liDa~d~~~s~~~~~~~~~~~~~~v~~g~---~~~~~~~~~~~~~------------~ 305 (503) T protein:vir:59 241 RVPIIPFKNNEEMVSDLKFYKDLIDNYDSITSSTMDSFSDFQQIVYVLKNY---DGENPKEFTANLR------------Y 305 (503) T ss_pred ccceEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhcCCeeEeecC---Cccccchhhhhhh------------c Confidence 000 12235788888888888877766666666677777776665432 1111112111111 1 Q ss_pred CcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcc-cccCcccccHH----------HHHHHHHHHHh Q lcl|Aclame:pro 242 KKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIE----------HQSLQFVIYTL 310 (419) Q Consensus 242 g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g-~~~~~~~sn~e----------~~~~~~~~~~i 310 (419) ++++.++++.++..+........+....+...+.|+..-++|..... ..+..++...+ +.....+...+ T Consensus 306 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~~~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l 385 (503) T protein:vir:59 306 HSVIKVSGDGGVDTLRAEIPVDSAAKELERIQDELYKSAQAVDNSPETIGGGATGPALENLYALLDLKANMAERKIRAGL 385 (503) T ss_pred ccceeccCCCcceeEeccCCHHHHHHHHHHHHHHHHHHhcccCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23566666555555554444455566667777777777776643221 11111211111 12222333333 Q ss_pred hHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cccee---- Q lcl|Aclame:pro 311 LPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIY---- 384 (419) Q Consensus 311 ~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~---- 384 (419) .-+++.+...+.... .........+.+.+..-...|..+.++.+.+++.+|+++...+.+++++-+-+ ...++ T Consensus 386 ~~~~~~i~~~~~~~~-~~~~~~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E~~ri~~E~ 464 (503) T protein:vir:59 386 RLFFWFFAEYLRNTG-KGDFNPDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEELARIEEEM 464 (503) T ss_pred HHHHHHHHHHHHhcc-CcccccccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHHHHHHHHHH Confidence 333333332222111 11111112244444566778999999999999999999999999988764321 11110 Q ss_pred ----eecccccccccc-ccccCCCCCCccccccchhccc Q lcl|Aclame:pro 385 ----LSPMNMVDASKP-QPIPMGKTEPTKAALDEIGRIL 418 (419) Q Consensus 385 ----~~~~n~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~ 418 (419) -...+....... ...+...+++..+..+..|+.= T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 503 (503) T protein:vir:59 465 NQYAEMQGNLLDDEGGDDDLEEDDPNAGAAESGGAGQVS 503 (503) T ss_pred HHHHhhhccccCccCCCCCCCcCCCCCCcccCCCCCCcC Confidence 000111000000 0001111111111122222222 No 161 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.13 E-value=4e-06 Score=50.16 Aligned_cols=394 Identities=11% Similarity=0.010 Sum_probs=163.4 Q ss_pred CCc-------------cchhcccccccccccchHHHHhhcCCC--cccccccCHH---HHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MFF-------------SRQLLSNLGQTQPGSGGWVSALLGSAR--SEAGQVVTPA---SALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~f-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |-- .+++........+.- ..+.....+.. ...+..+..+ ....+.+...+|+..+..+--. T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rl-~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~ 79 (484) T protein:vir:77 1 MTSPLQKQENVDPEKAREEMLNLFTERTQDL-GDNTAYYESERRPDAVGVTVPQQMQKLLAHVGYPRLYIDAIAARQELE 79 (484) T ss_pred CCCcccccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhcccccchhHHhhhhhcCcHHHHHHHHHhhhccC Confidence 110 000000000000000 00111111110 0011111111 1122345566777777655444 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce-------EEEEEecCce Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI-------QGLYPLDNEA 135 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~-------~~l~~~~~~~ 135 (419) .|.+- ++.. ....+..++. .. ........+..+.+.+|.||+++.++..|.+ ..+.+++|.. T Consensus 80 g~~~~---~~~~---~~~~l~~i~~-~N----~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~ 148 (484) T protein:vir:77 80 GFRLG---GADK---ADEQLWDWWQ-AN----DLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTN 148 (484) T ss_pred ceecC---Ccch---hHHHHHHHHH-hc----CHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccce Confidence 44431 1111 1123434442 22 3345677888999999999999988877753 2466777877 Q ss_pred eEEEEcccee-----E--------------EEEeec--------c-c---------ccccceEEEecCCC-CCCcccccH Q lcl|Aclame:pro 136 VTVMKGPDLK-----P--------------MYRVAG--------A-D---------PLPQRLVHHVRWMS-INGYTGLSP 177 (419) Q Consensus 136 v~~~~~~~~~-----~--------------~~~~~~--------~-~---------~~~~~~i~~~~~~~-~~~~~G~s~ 177 (419) +.+.++.... + ..+..+ . . .+..=.|+++.+++ ..+.+|.|. T Consensus 149 ~~~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s~ 228 (484) T protein:vir:77 149 LYAQIDPRTRQVMRAIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRLSDLYGTTE 228 (484) T ss_pred eEEEecCCCCceEEEEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccccccCccCCccc Confidence 7666553210 0 000000 0 0 00000134444443 334578886 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeee Q lcl|Aclame:pro 178 VLL-HANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKP 255 (419) Q Consensus 178 ~~~-~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~ 255 (419) +.. +...++....+...........+.|..++.--. ......+ -++-...|+. ..++++.++ ++.++.+ T Consensus 229 i~~~v~~L~Da~~~~~s~~~~~~~~~a~p~~~i~G~~--~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~q 299 (484) T protein:vir:77 229 ITPELRSVTDAAARTLMLMQATAELMGVPQRLLFGVK--GEELGVD-PETGQTLFDA------YLARILAFEDHESKAQQ 299 (484) T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhCCC--cchhccc-ccccchhhhh------hhhhhcccCCCCceeEe Confidence 642 333333333333333333333344554443110 0000000 0011111211 123466665 4678877 Q ss_pred cCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc---------- Q lcl|Aclame:pro 256 LSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL---------- 325 (419) Q Consensus 256 l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l---------- 325 (419) +....-+ .+++..+....+|+..-++|+..+|+... |-++.+... +....+.-.+...+..|...| T Consensus 300 ~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~-n~~Sg~Al~--~~~~~l~~ka~~k~~~f~~~l~~~~~l~~~~ 375 (484) T protein:vir:77 300 FSAAELR-NFVDALDALDRKAAAYTGLPPYYLSFSSE-NPASAEAIR--SSESRLVKTVERKNKIFGGAWEQAMRVAYKV 375 (484) T ss_pred ecCCChH-HHHHHHHHHHHHHhcccCCCHHHhccccC-cchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7655433 37788888899999999999999976432 212222222 222222222222222221111 Q ss_pred cChhhh--hhhhhhhhhhhhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC--Ccceee------eccccccc Q lcl|Aclame:pro 326 LLPSER--KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK--GGDIYL------SPMNMVDA 393 (419) Q Consensus 326 l~~~~~--~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~--ggD~~~------~~~n~~~~ 393 (419) ...... ....+.+.+......+..+.++.+.+++.+| +++..-+++++|+.+-+ ...... ....+.++ T Consensus 376 ~~~~~~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~~~~ 455 (484) T protein:vir:77 376 MNGGDIPPEYYRMESIWRDPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLMGTM 455 (484) T ss_pred hCCCCcccccccceEEecCCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhh Confidence 000000 1123344444455678888999999988876 88988889999986532 111000 00000000 Q ss_pred cccccc---cCCCCCCccccccchhcccC Q lcl|Aclame:pro 394 SKPQPI---PMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 394 ~~~~~~---~~~~~~~~~~~~~e~~~~~~ 419 (419) ....+. ....+++.++..+-.+..=+ T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (484) T protein:vir:77 456 FGTDPSGGGNPDNPETPEPQPNPAEEAAA 484 (484) T ss_pred ccccccCCCCCCCCCcccccCCCccccCC Confidence 000000 00000000000011111111 No 162 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.06 E-value=5.6e-06 Score=49.38 Aligned_cols=353 Identities=11% Similarity=0.016 Sum_probs=152.0 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc--ccccccCHHH--H--hccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVTPAS--A--LSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~--~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |...+........ .+.- ..+.....+... ..+..+.++- . +-..+...+|+.+++.+.=-.|.+ . T Consensus 4 ~~i~~L~~~~~~~-~~r~-~~~~~yy~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~~----~--- 74 (422) T protein:vir:97 4 MGMGYLRRKLALF-KTGV-DKRYRYYAMDDRDDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFTN----D--- 74 (422) T ss_pred HHHHHHHHHHHHH-HHHH-HHHHHHHhcCCChhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceeeC----C--- Confidence 4433322211111 1110 111222221111 1111111111 1 112344556666655322122211 1 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC-CCceEEEEEecCceeEEEEcccee-----EEE Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ-DGVIQGLYPLDNEAVTVMKGPDLK-----PMY 148 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~-~G~~~~l~~~~~~~v~~~~~~~~~-----~~~ 148 (419) ...+...+. . |. .......+..+.+.+|.||+++.++. .|.+ .+.+++|..+...++.... +.+ T Consensus 75 ----d~~l~~~w~-~-N~---ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~~a~~~ 144 (422) T protein:vir:97 75 ----DFNAWEIFK-A-NN---PDIFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLTEGYAI 144 (422) T ss_pred ----chhHHHHHH-h-cC---hHHHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcceeeEEE Confidence 123444553 2 22 23345577889999999999998764 5654 5788899988877765321 000 Q ss_pred Eeec---c----cccccc---------------------eEEEecCC-CCCCcccccHH-HHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 RVAG---A----DPLPQR---------------------LVHHVRWM-SINGYTGLSPV-LLHANAIGHAQAIQQYAGKS 198 (419) Q Consensus 149 ~~~~---~----~~~~~~---------------------~i~~~~~~-~~~~~~G~s~~-~~~~~~i~~~~~~~~~~~~~ 198 (419) +..+ . .++.+. -++++.+. .....+|.|.+ ......++............ T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~ 224 (422) T protein:vir:97 145 LESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERAEVT 224 (422) T ss_pred EEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHHHHH Confidence 1000 0 000000 12333333 34456788755 23333333333322222222 Q ss_pred HHccCCCceEEE-eCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCC-----CceeeecCcChhhHHHHHHHHHH Q lcl|Aclame:pro 199 FMNGTALSGVIE-RPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQE-----GMKFKPLSMTNVDAALIDALRLS 272 (419) Q Consensus 199 ~~ng~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~ 272 (419) .+=.+.|.-++. .+. +....+.++... ++++.++. +.++.++..+.-+ .+.+..+.. T Consensus 225 ~e~~a~pqr~i~G~d~------d~~~~~~~~~~~----------~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~ 287 (422) T protein:vir:97 225 AEFYSFPQKYVLGMDP------DAKPMEKWRATV----------STLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMY 287 (422) T ss_pred HHHhcchhhhhcccCc------ccccCchhhhhh----------hhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHH Confidence 223344444442 111 112222333222 24555542 3567666544433 488999999 Q ss_pred HHHHHHHhcCCHHHcccccCc--ccccHHHHHHHHHHHHhhHHHHHHHHHHHhh------ccC-----hhhhhhhhhhhh Q lcl|Aclame:pro 273 ALDIARIYKIPAHMVNELERA--TFSNIEHQSLQFVIYTLLPWVKRHEQAKTRD------LLL-----PSERKQYFIEYN 339 (419) Q Consensus 273 ~~~Ia~~fgvpp~~~g~~~~~--~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~------ll~-----~~~~~~~~~~fd 339 (419) ...||..=++|+..+|..... +...+..+...+...+ .-....+.+.+.+- +.. +.+..+..+.| T Consensus 288 ~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w- 365 (422) T protein:vir:97 288 ASLFAGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAG-RKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKW- 365 (422) T ss_pred HHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEE- Confidence 999999999999999875431 1112222222211111 11111111211110 001 01111122222 Q ss_pred hhhhhhcc---HHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCC Q lcl|Aclame:pro 340 LAGLLRGD---QSSRYAAYAVGRQW--GWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMG 402 (419) Q Consensus 340 ~~~~~~~d---~~~~~~~~~~~~~~--g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~ 402 (419) ......+ ..+.+..+.+++.+ |+....-+++++|+...+.. . ..++... ..+ T Consensus 366 -~p~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~~~---~-----~~~~~~~--~d~ 422 (422) T protein:vir:97 366 -EPLFEADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGADKP---I-----PAITEVT--TDG 422 (422) T ss_pred -ccCCCCChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCchhHH---H-----HHHHhhh--ccC Confidence 2222334 45556666777777 78888999999999653210 0 0000000 000 No 163 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=98.05 E-value=5.8e-06 Score=49.30 Aligned_cols=382 Identities=10% Similarity=0.023 Sum_probs=169.1 Q ss_pred CCccchhcccccccccccchHHH-----------------HhhcCCC-cccccc---cCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVS-----------------ALLGSAR-SEAGQV---VTPASALSLTVLQNCVTLLAESI 59 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~~---~~~~~~~~~~~v~~~i~~ia~~i 59 (419) |-.-+.-.-...........++. ....+.. ...... .....-+..+.....|+..+..+ T Consensus 1 ~~~~~~~~~~~p~d~~~~~~~l~~~i~~~~~~~~r~~~~~~yy~g~~~i~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l 80 (453) T protein:vir:39 1 MKYKPPKLMTFPKDEPITNEVVTKFMEKHRLEVARYEYLKNMYRGIMAIDAEPTKDLWKPDNRLTVNFTKYIVDTFTGYF 80 (453) T ss_pred CeecCCcceEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhcCCCccccCccceeecchHHHHHHHHhhhh Confidence 21100000000000000111111 1111100 000000 00111133567778888888888 Q ss_pred ccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEE Q lcl|Aclame:pro 60 AQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVM 139 (419) Q Consensus 60 a~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~ 139 (419) -+-|+.+...+++ ....+..++.. | ........+..+.+.+|.||+++..+..|.+. +..++|..+.+. T Consensus 81 ~g~~~~~~~~d~~-----~~~~l~~i~~~--N---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~v 149 (453) T protein:vir:39 81 NGIPVKKSHSDKE-----TLSKLQEFDNL--N---DMEDEESELAKMACIYGRAFELLYQNEETQTN-VIYNTPENMFMV 149 (453) T ss_pred cccCceeccCChH-----HHHHHHHHHHh--c---ChhHHHHHHHHHHhhcCeEEEEEEecCCCceE-EEEEcccceEEE Confidence 7888776422111 12234444432 2 33346677889999999999999988888753 555677777766 Q ss_pred Ecccee------EEEEeeccc-----ccccce-------------------------EEEecCCCCCCcccccHHHHHHH Q lcl|Aclame:pro 140 KGPDLK------PMYRVAGAD-----PLPQRL-------------------------VHHVRWMSINGYTGLSPVLLHAN 183 (419) Q Consensus 140 ~~~~~~------~~~~~~~~~-----~~~~~~-------------------------i~~~~~~~~~~~~G~s~~~~~~~ 183 (419) .+.... +.++..... .+.++. |++++ +...|.|.+..... T Consensus 150 ~d~~~~~~~~~~ir~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~----n~~~g~sd~e~v~~ 225 (453) T protein:vir:39 150 YDDTIKQEPLFAVRYGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFY----FNEERMSIFESVIS 225 (453) T ss_pred ecCCCCCeEEEEEEEEEeCCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEec----CCCCCCcchhhhHH Confidence 653210 111110000 000111 11111 12357888887777 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhH Q lcl|Aclame:pro 184 AIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDA 263 (419) Q Consensus 184 ~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~ 263 (419) .++....+.....+.+...+.|..+++-.. .+++....++.. ......+ ....+++.++..+....... T Consensus 226 liDa~~~~~s~~~~~~~~~~~p~~~~~g~~-----~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~lt~~~~~~ 294 (453) T protein:vir:39 226 LVNAFNKAISEKANDVDYFSDQYLTFLGAA-----VEEEDLKNIRSN---RVINYYG---ESSEAKNVDVKFLEKPDSDS 294 (453) T ss_pred HHHHHHHHHHHHHHHHHHhhCceeeeecCC-----CCchhhhhhhhc---ceeeecC---CCCCCCCCceeEEeecCCHH Confidence 777766666666666677777776665321 122333332221 0000000 01112344444444444455 Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhh Q lcl|Aclame:pro 264 ALIDALRLSALDIARIYKIPAHMVNELERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQ 333 (419) Q Consensus 264 ~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~ 333 (419) .+.+..+...+.|+..-++|..-.+..++.++..++ ......+...+...++.+.. +....-...+... T Consensus 295 ~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~-~~~~~~~~~~~~~ 373 (453) T protein:vir:39 295 QTENLLDRLTKLIFQTTMVANISDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCE-LSTNVSNKEAWKD 373 (453) T ss_pred HHHHHHHHHHHHHHHHhCCcccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCcccccc Confidence 667778888899999888875332222222211111 11122333344443333322 2111111111122 Q ss_pred hhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeeecc-cccccc-ccccccCCCCCCccc Q lcl|Aclame:pro 334 YFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLSPM-NMVDAS-KPQPIPMGKTEPTKA 409 (419) Q Consensus 334 ~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~~~-n~~~~~-~~~~~~~~~~~~~~~ 409 (419) +.+.+..-...|..+.++.+.++ +|+++..-+.+++++-+-+ ..++...-. ...... .......+..++... T Consensus 374 --i~v~f~~~~p~~~~~~a~~~~kl--~g~is~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~ 449 (453) T protein:vir:39 374 --IEYTFTRNEPKDIKEQAETANIL--MGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPE 449 (453) T ss_pred --ceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC Confidence 33334455677888899988877 5789998888888764321 111110000 000000 000011111111112 Q ss_pred cccc Q lcl|Aclame:pro 410 ALDE 413 (419) Q Consensus 410 ~~~e 413 (419) .+.| T Consensus 450 ~~~e 453 (453) T protein:vir:39 450 TNEE 453 (453) T ss_pred cCCC Confidence 2222 No 164 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=98.05 E-value=6e-06 Score=49.20 Aligned_cols=398 Identities=10% Similarity=-0.036 Sum_probs=184.4 Q ss_pred CC-ccchhccc----ccccccccchHHHHhhcCCCc---cccccc---CHHHHhccHHHHHHHHHHHHhhccCCeeEeee Q lcl|Aclame:pro 1 MF-FSRQLLSN----LGQTQPGSGGWVSALLGSARS---EAGQVV---TPASALSLTVLQNCVTLLAESIAQLPVELYER 69 (419) Q Consensus 1 M~-f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~ 69 (419) +. ..+.++.- .....+.- .-+...+-+... ...... ....-..++.....++..+..+-+-|+++... T Consensus 38 ~~~~~~~i~~~i~~h~~~~~~rl-~~l~~yY~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~ 116 (502) T protein:vir:48 38 MVNNWELLKNFINHHKLRQAPRI-QELLDYARGENHDVLKSGRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYD 116 (502) T ss_pred ccccHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCccccccccccccccccceeecchHHHHHHHHhhhhcccCeeEecC Confidence 11 11111110 00000000 001111111000 000000 01112335677788899999888999887543 Q ss_pred cCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccc--ee-- Q lcl|Aclame:pro 70 SGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD--LK-- 145 (419) Q Consensus 70 ~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~--~~-- 145 (419) .... .+.+...|+. .+..-........+..+++.+|.||+++.++..|.+. +..++|..+.+..+.. .. T Consensus 117 d~~~-----~~~~~~~l~~-~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~-i~~~~p~~~~~vydd~~~~~~~ 189 (502) T protein:vir:48 117 DNED-----NSQNDDAIKR-IGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDETR-IKRLSPLETFVIYDNSLEDNSI 189 (502) T ss_pred Cccc-----hhHHHHHHHH-HHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCceE-EEEEcccceEEEEcCCCCCceE Confidence 3221 1223333321 1122244567788899999999999999988888753 5667777777665532 11 Q ss_pred --EEEEee----cc----cccccce------------------------EEEecCCCCCCcccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 146 --PMYRVA----GA----DPLPQRL------------------------VHHVRWMSINGYTGLSPVLLHANAIGHAQAI 191 (419) Q Consensus 146 --~~~~~~----~~----~~~~~~~------------------------i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~ 191 (419) +.++.. +. ....++. |+.+. +...|.|.+..+...++....+ T Consensus 190 ~~ir~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~----nn~~g~sd~e~v~~liDa~d~~ 265 (502) T protein:vir:48 190 AAVRYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFL----NNADGIGDYETELYLIDLYDSA 265 (502) T ss_pred EEEEEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEec----CCCCCCCchhhhHHHHHHHHHH Confidence 111110 00 0000111 11111 2236888888888888888777 Q ss_pred HHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHH Q lcl|Aclame:pro 192 QQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRL 271 (419) Q Consensus 192 ~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~ 271 (419) .....+.+.....|-.++.-..... .++....++... ..+... .+......++.++..+........+....+. T Consensus 266 ~S~~~~~~~~~~~~~lv~~g~~~~~---~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~ 339 (502) T protein:vir:48 266 ESDTANHMSDMADAILAIYGDLALP---QGMQASDMKRTR-LMQLKP--PKSADGKEGTVKAEYLTKSYDVSGAEAYKTR 339 (502) T ss_pred HHHHHHHHHHhcCceeeeecCcccc---cccchhhhhhcc-eeeccc--cccccccccCcceeEeeecCCHHHHHHHHHH Confidence 7777777777777776665432111 112222221110 000000 0001112344555555554445556677889 Q ss_pred HHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhh Q lcl|Aclame:pro 272 SALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNL 340 (419) Q Consensus 272 ~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~ 340 (419) ..+.|+..-++|+...+.. ++.++..++ ......+...+.-.++.+...+.... .........+.+.+ T Consensus 340 L~~~I~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~-~~~~~d~~~i~i~f 418 (502) T protein:vir:48 340 LNKDIHVFTNTPDMSDNHFSGNASGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVN-EFKDFDESRLKITF 418 (502) T ss_pred HHHHHHHHhCCCCcCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cccccccccceEEe Confidence 9999999999987544322 111111111 11113333334443333333222211 10111112344444 Q ss_pred hhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----eccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 341 AGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 341 ~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) ......|..+.++.+.++ +|+++..-+.+++++-..+ ..+++. ......+.........+..+..++..+| T Consensus 419 ~~~~p~d~~e~a~~~~kl--~g~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~d~~~e~~~~~ 496 (502) T protein:vir:48 419 TPNLPKSLYEQVSILNDL--GGQVSQETALSLSGLVENPTEELDKINEESSKIDFKGYPSYFYDNVGKYTDEVKETHTDD 496 (502) T ss_pred CCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcccccccccccccCCCccCCCCcC Confidence 556677899999998887 5789998888888763321 111110 0111111111111111222223344455 Q ss_pred hhcccC Q lcl|Aclame:pro 414 IGRILS 419 (419) Q Consensus 414 ~~~~~~ 419 (419) .+++.- T Consensus 497 ~~~~~~ 502 (502) T protein:vir:48 497 FERVYE 502 (502) T ss_pred cCCCCC Confidence 555555 No 165 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=98.00 E-value=4.4e-06 Score=49.98 Aligned_cols=377 Identities=10% Similarity=-0.028 Sum_probs=160.8 Q ss_pred CC-------ccchhcccccccccccchHHHHhhcCCC--cccccccCHH-----HHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MF-------FSRQLLSNLGQTQPGSGGWVSALLGSAR--SEAGQVVTPA-----SALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~-------f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) |- ..+.+....... +. -..+.....+.. ...+..+..+ ....+.+...+|+..+..+--..|.+ T Consensus 23 ~~~~~~~~l~~~l~~~~~~~~-~r-l~~l~~YY~G~~~~~~~~~~~~~~~~~~~~~~v~n~~~~ivd~~a~~l~~~gf~~ 100 (501) T protein:vir:25 23 MSREQLGALVADMWRLHISER-QW-LDRIYEYTKGLRGRPEVPEGASDEVKELAKLSVKNVLSLVRDSFAQNLSVVGYRN 100 (501) T ss_pred CChHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHhcCCCchhccccCChhhhhhHhhhhcChHHHHHHHHHhhhcccceec Confidence 10 000000000000 00 000111111110 0011111111 01122455667776666543333332 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc-ce- Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP-DL- 144 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~-~~- 144 (419) .++. ..+.+..++ ... +.......+..+.+.+|.||+++.++..|. .+..++|..+.+.+.. .. T Consensus 101 ----~d~~---~~~~l~~i~-~~N----~~d~~~~~~~~~a~i~G~ay~~v~~de~~~--~i~~~sp~~~~~iy~D~~~~ 166 (501) T protein:vir:25 101 ----ALAK---ENDPAWEMW-QRN----RMDARQAEVHRPALTYGASYVTVTPTDEGP--VFRTRSPRQILAVYADPSVD 166 (501) T ss_pred ----CCcc---chHHHHHHH-Hhc----ChhHHHHHHHHHHhhcCceEEEEecCCCCC--eEEEeccccEEEEEecCCCC Confidence 1111 122343433 222 223455678889999999999998888774 3556678777655421 10 Q ss_pred -----eEEEEeec----c----ccccc--------------------------------------------c--eEEEec Q lcl|Aclame:pro 145 -----KPMYRVAG----A----DPLPQ--------------------------------------------R--LVHHVR 165 (419) Q Consensus 145 -----~~~~~~~~----~----~~~~~--------------------------------------------~--~i~~~~ 165 (419) .+.++... . ..+.+ . .|+++. T Consensus 167 ~~~~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~ 246 (501) T protein:vir:25 167 AWPQYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFV 246 (501) T ss_pred cceeEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEecc Confidence 00110000 0 00000 0 133344 Q ss_pred CCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcce Q lcl|Aclame:pro 166 WMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVA 245 (419) Q Consensus 166 ~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~ 245 (419) +.+...-.|.|.+......++..............-.+.|..++.- . .. +..+.++ . ..++++ T Consensus 247 N~~~~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G--~-~~----~~~~~~~-----~-----~~~~i~ 309 (501) T protein:vir:25 247 NGRDADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISG--W-TG----SKAEVLK-----A-----SALRVW 309 (501) T ss_pred CccccCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhC--C-CC----Cccchhh-----h-----ccccee Confidence 3332233577776665555555544444444444444445444321 1 11 1111111 1 124577 Q ss_pred ecC-CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhh Q lcl|Aclame:pro 246 LLQ-EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRD 324 (419) Q Consensus 246 vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~ 324 (419) .++ ++.++.++..... ..+.+.++....+|+..-++|+..+|...+ |....-..+....+.-.+...+..|... T Consensus 310 ~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~----N~Sg~Al~~~~~~l~~ka~~k~~~f~~~ 384 (501) T protein:vir:25 310 TFEDPEVKAQAFPPASV-EPYNLILEEMLQHVAMVAQISPAQVTGKMI----NVSAEALAAAEANQQRKLAAKRESFGES 384 (501) T ss_pred ccCCCCceEEEecccCh-HHHHHHHHHHHHHHHhhcCCChhhhccccC----ChHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 766 4677766553322 237888999999999999999998875422 2122222233333333333333332222 Q ss_pred cc------Chhhh-----hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHH-HhCCCCCC-----------Cc Q lcl|Aclame:pro 325 LL------LPSER-----KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRR-LENMPPVK-----------GG 381 (419) Q Consensus 325 ll------~~~~~-----~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~-~lGl~p~~-----------gg 381 (419) |- ....+ ....+.+.+......+..+.++.+.+++..|+ +.-.+.. +.|+++-+ .. T Consensus 385 l~~~~rl~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~ie~~~~~~~e~~~ 463 (501) T protein:vir:25 385 WEQLLRLAAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVPGMTQQTIQAIKDSLRGGEV 463 (501) T ss_pred HHHHHHHHHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHhH Confidence 11 00001 11233444455667789999999999988875 4444433 45776521 01 Q ss_pred ceee---eccccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 382 DIYL---SPMNMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 382 D~~~---~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) +..+ .+..-.+..........++.+..+.....|. T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 501 (501) T protein:vir:25 464 KSLVDKLLSNEPAPVPPPPPQAAAQALNEGGVNGNGGA 501 (501) T ss_pred HHHHHHhhccCcCCCCCCCCCCCccccccccCCCCCCC Confidence 1010 0111111111111111112222222233333 No 166 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=97.99 E-value=6.3e-06 Score=49.11 Aligned_cols=392 Identities=13% Similarity=0.044 Sum_probs=156.3 Q ss_pred CC---------ccchhcccccccccccchHHHHhhcCCC--cccccccCH---HHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MF---------FSRQLLSNLGQTQPGSGGWVSALLGSAR--SEAGQVVTP---ASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~---------f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) |. +...+.+......+.- ..+....-+.. ...+..+.. ..-........+|+.+++.+---.|.+ T Consensus 1 ~~~~~~~d~~~~i~~L~~~~~~~~~r~-~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~a~~l~~~Gf~~ 79 (488) T protein:vir:23 1 MAETESIDPEKLRDQLLDAFENKQNEL-KSSKAYYDAERRPDAIGLAVPLDMRKYLAHVGYPRTYVDAIAERQELEGFRI 79 (488) T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchhhcCcccchhhhhhhhhcchHHHHHHHHHHhhhccceec Confidence 11 0000000000000000 00001111100 001111111 111234556677777776554334443 Q ss_pred eeecCC----cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC--------CCceEEEEEecCc Q lcl|Aclame:pro 67 YERSGD----DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ--------DGVIQGLYPLDNE 134 (419) Q Consensus 67 ~~~~~~----~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~--------~G~~~~l~~~~~~ 134 (419) -..... +........+..++. +. ........+..+.+.+|.||+++.+.. .|. ..+.+++|. T Consensus 80 ~~~~~~~~~~~~d~~~~~~l~~i~~-~N----~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~-~~i~~~~p~ 153 (488) T protein:vir:23 80 PSANGEEPESGGENDPASELWDWWQ-AN----NLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEV-PLIRVEPPT 153 (488) T ss_pred cCCcccccccccchhHHHHHHHHHH-hc----ChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCc-ceEEEeccc Confidence 211110 111111123333442 22 345567778899999999999886543 222 235566777 Q ss_pred eeEEEEccce-e----EE--------------EEeec----------cc--------ccccceEEEecCCC-CCCccccc Q lcl|Aclame:pro 135 AVTVMKGPDL-K----PM--------------YRVAG----------AD--------PLPQRLVHHVRWMS-INGYTGLS 176 (419) Q Consensus 135 ~v~~~~~~~~-~----~~--------------~~~~~----------~~--------~~~~~~i~~~~~~~-~~~~~G~s 176 (419) .+.+.++... . +. .+..+ .. .+..=.|+++.+++ ..+.+|.| T Consensus 154 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s 233 (488) T protein:vir:23 154 ALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDLYGTS 233 (488) T ss_pred eeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCcCCcc Confidence 7665554320 0 00 00000 00 00000134444433 34567888 Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCC--cee Q lcl|Aclame:pro 177 PVLL-HANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEG--MKF 253 (419) Q Consensus 177 ~~~~-~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g--~~~ 253 (419) -+.. +...++..............-.+.|..++.--. ......+. ..-+..|+. ..++++.+++| .++ T Consensus 234 ~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G~~--~~~~~~~~-~~~~~~~~~------~~~~v~~~~~g~~~~~ 304 (488) T protein:vir:23 234 EISPELRSVTDAAAQILMNMQGTANLMAIPQRLIFGAK--PEELGINA-ETGQRMFDA------YMARILAFEGGEGAHA 304 (488) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhCCC--cccccccc-cccchhhhh------hhhhhccCCCCCCcee Confidence 6642 233333332222222222222333433332100 00000000 000111111 12346777665 567 Q ss_pred eecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc-------- Q lcl|Aclame:pro 254 KPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL-------- 325 (419) Q Consensus 254 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l-------- 325 (419) .++...+.+ .+++..+..+.+|+..-++|+..+|.... |.++.++. .+....+.-.+...+..|...| T Consensus 305 ~q~~~~~~~-~~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~ 380 (488) T protein:vir:23 305 EQFSAAELR-NFVDALDALDRKAASYSGLPPQYLSSSSD-NPASAEAI--KAAESRLVKKVERKNKIFGGAWEQAMRLAY 380 (488) T ss_pred EecCCCChH-HHHHHHHHHHHHHhcccCCCHHHhccccC-cchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 666544433 47788888999999999999998875432 11111111 1222222222222222222211 Q ss_pred --cChhhh--hhhhhhhhhhhhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC--Cccee----ee------- Q lcl|Aclame:pro 326 --LLPSER--KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK--GGDIY----LS------- 386 (419) Q Consensus 326 --l~~~~~--~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~--ggD~~----~~------- 386 (419) ...... ....+.+.+......+..+.++.+.+++.+| +++..-+++++|+-+.+ ..+.. .. T Consensus 381 ~~~~~~~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~~~~ 460 (488) T protein:vir:23 381 KMVKGGDIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQKQGLGLIG 460 (488) T ss_pred HHhcCCCcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH Confidence 111110 1122333333445567888888888888766 78898889999986532 11110 00 Q ss_pred c--cccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 387 P--MNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 387 ~--~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) . ....+.+..++.+.+... ++.... | T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~------~~e~~~-a 488 (488) T protein:vir:23 461 SLYGASTPEGKPGEAPVGEPP------APEPDA-A 488 (488) T ss_pred HHhccCCCcccCCCCCCCCCC------CCCCCC-C Confidence 0 001111111111111111 111111 1 No 167 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=97.98 E-value=8.5e-06 Score=48.39 Aligned_cols=383 Identities=10% Similarity=0.011 Sum_probs=172.3 Q ss_pred CC--ccchhcc-------------cc-cccccccchH------HHHhhcCC-Ccccccc------cCHHHHhccHHHHHH Q lcl|Aclame:pro 1 MF--FSRQLLS-------------NL-GQTQPGSGGW------VSALLGSA-RSEAGQV------VTPASALSLTVLQNC 51 (419) Q Consensus 1 M~--f~~~~~~-------------~~-~~~~~~~~~~------~~~~~~~~-~~~~~~~------~~~~~~~~~~~v~~~ 51 (419) || |+.+++. .. .......... ...+..+. ..+.... .-....+........ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~~~s~n~~~~i 80 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPVNRRQLSMNLPKVT 80 (499) T ss_pred ChhHHHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCccccceeecchHHHH Confidence 44 2211111 10 0110111111 11222211 1111000 001223344566777 Q ss_pred HHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 52 VTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) ++..|+.+..-|..+...+ ......|+.-- ..-.....+..++.+....|.+|+.+..+..|.+. +..+ T Consensus 81 v~~~a~~l~~ep~~i~~~d---------~~~~e~l~~~~-~~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~~-i~~v 149 (499) T protein:vir:80 81 AKYMSKLLFNEKVKINIDD---------ETAEEFVLNVL-KTNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNVK-VSFA 149 (499) T ss_pred HHHHHHhhhCCcceEeeCC---------HHHHHHHHHHH-hhccHHHHHHHHHHHHhhcCcEEEEEEECCCCcEE-EEEE Confidence 8888888877766653321 12223332111 11234455666777888899999999887777543 3445 Q ss_pred cCceeEEEEcccee----------------E--------------EEEee------------ccc--------cccc--- Q lcl|Aclame:pro 132 DNEAVTVMKGPDLK----------------P--------------MYRVA------------GAD--------PLPQ--- 158 (419) Q Consensus 132 ~~~~v~~~~~~~~~----------------~--------------~~~~~------------~~~--------~~~~--- 158 (419) +|..+-+.....+. + .|++. |.. ...+ T Consensus 150 ~a~~~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~ 229 (499) T protein:vir:80 150 TADCMYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVP 229 (499) T ss_pred cCCceEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCcee Confidence 55554432211110 0 00000 000 0000 Q ss_pred ------ceEEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEE-----EeCCCCCchhhHH Q lcl|Aclame:pro 159 ------RLVHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI-----ERPTDAPALKDQA 222 (419) Q Consensus 159 ------~~i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~-----~~~~~~~~~~~~~ 222 (419) -.+.+++.+-. +...|+|.+.-+...++..........+.++.| ....++ .......+... . T Consensus 230 ~~~~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~-~~~i~v~~~~l~~~~~~~g~~~-~ 307 (499) T protein:vir:80 230 LPSLTRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLG-KKKVLVPSSFVKTAVNLDGSTT-Q 307 (499) T ss_pred ecCCCccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhc-ccceecchhhhhccCCCCCCcc-c Confidence 01233333211 235699999999999988877777777777654 333333 11111111100 0 Q ss_pred HHHHHHHHHHHHhccccccCccee-c--CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH Q lcl|Aclame:pro 223 SVDRITDGWNAKFGGSGNAKKVAL-L--QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIE 299 (419) Q Consensus 223 ~~~~~~~~~~~~~~g~~n~g~~~v-l--~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e 299 (419) . | .......+.+. . +++-.++.++....+-++.+..+...++|....|+++..+|...++..+..+ T Consensus 308 ~-------~----~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAte 376 (499) T protein:vir:80 308 Y-------F----DSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATE 376 (499) T ss_pred C-------C----CcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHH Confidence 0 0 01111011111 1 2233466677666666678888899999999999999999876654432222 Q ss_pred HH-HHHHHHHHhhHHHHHHHHHHHhh---------ccC--hh-hhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCH Q lcl|Aclame:pro 300 HQ-SLQFVIYTLLPWVKRHEQAKTRD---------LLL--PS-ERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSI 366 (419) Q Consensus 300 ~~-~~~~~~~~i~P~~~~i~~~l~~~---------ll~--~~-~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~ 366 (419) -. ...-...++.-....++..|..- ++. .. ......+.++++.-...|.++.++...+++.+|+|+. T Consensus 377 i~s~~~~l~~~~~~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~ 456 (499) T protein:vir:80 377 VVSEKSETYQTKNSHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPL 456 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCH Confidence 10 11111112222222222222211 011 11 1122345555666667788999999999999999999 Q ss_pred HHHHHHh-CCCCCCCcceeeecccccc-ccccccccCCCCCCccccccc Q lcl|Aclame:pro 367 NDIRRLE-NMPPVKGGDIYLSPMNMVD-ASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 367 NE~R~~l-Gl~p~~ggD~~~~~~n~~~-~~~~~~~~~~~~~~~~~~~~e 413 (419) -.++... |.+. +..++-+.-..-.. .+.+.++..+ -.++.| T Consensus 457 et~l~~~~~~~d-~ea~~el~~i~~E~~~~~~~~d~~g-----~~ge~e 499 (499) T protein:vir:80 457 KIALQRAWNITE-AEADEWAEMLAKEKQAEIPNNDMTG-----IFGEEE 499 (499) T ss_pred HHHHhhcCCCCh-HHHHHHHHHHHHHhhcCCCCCCccc-----cCCCCC Confidence 9887654 4432 11221111100000 0000111111 111122 No 168 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=97.96 E-value=9e-06 Score=48.24 Aligned_cols=388 Identities=12% Similarity=0.050 Sum_probs=164.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc--ccccccC---HHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcce Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVT---PASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRK 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~ 75 (419) |.......... ...+.-. .+....-+... ..+..+- ............+|+..+..+...+|.+- ++.. T Consensus 16 ~~~~~L~~~~~-~~~~r~~-~~~~YY~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~---~~~~- 89 (485) T protein:vir:24 16 IARDEMVSAFE-DQNQNLR-SNTSYYEAERRPEAIGVTVPVQMQSLLAHVGYPRLYVDSIAERQAVEGFRLG---DADE- 89 (485) T ss_pred HHHHHHHHHHH-HHHHHHH-HHHHHHhccCchhhcCcccchhhhhhhhccchHHHHHHHHhhhhccCceecC---CCch- Confidence 11100000000 0000000 00111111100 0011110 11111234556667776666544555432 1111 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce-------EEEEEecCceeEEEEccce---- Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI-------QGLYPLDNEAVTVMKGPDL---- 144 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~-------~~l~~~~~~~v~~~~~~~~---- 144 (419) ....+..++. . | ....+...+..+++.+|.||+++.++..+.. ..+.+++|..+.+.++... T Consensus 90 --~~~~l~~i~~-~-N---~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~~~~~ 162 (485) T protein:vir:24 90 --ADEELWQWWQ-A-N---NLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIGRPA 162 (485) T ss_pred --hHHHHHHHHH-h-c---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCcCcee Confidence 1122444443 2 2 3345678899999999999999987765432 2466778887776665331 Q ss_pred --eEEEE-------------eec---------cc---------ccccceEEEecCC-CCCCcccccHHHH-HHHHHHHHH Q lcl|Aclame:pro 145 --KPMYR-------------VAG---------AD---------PLPQRLVHHVRWM-SINGYTGLSPVLL-HANAIGHAQ 189 (419) Q Consensus 145 --~~~~~-------------~~~---------~~---------~~~~~~i~~~~~~-~~~~~~G~s~~~~-~~~~i~~~~ 189 (419) +..++ ..+ .. .+..=.|+++.++ ...+.+|.|.+.. +...++... T Consensus 163 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~ 242 (485) T protein:vir:24 163 KAIRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAA 242 (485) T ss_pred EEEEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHH Confidence 00000 000 00 0000113444443 3345688887653 444444444 Q ss_pred HHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecCcChhhHHHHHH Q lcl|Aclame:pro 190 AIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMTNVDAALIDA 268 (419) Q Consensus 190 ~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~~~d~~~~e~ 268 (419) .+..-........+.|..++.--. .... . ..-+.-...|+. ..|.++.++ ++.++.++.....+ .+++. T Consensus 243 ~~~s~~~~~~~~~a~p~~~i~G~~-~~~~-~-~~~~~~~~~~~~------~~~~i~~~~~~~~~~~q~~~~~~e-~~~~~ 312 (485) T protein:vir:24 243 RILMLMQATAELMGVPQRLIFGIK-PEEI-G-VDPETGQTLFDA------YLARILAFEDAEGKIQQFSAAELA-NFTNA 312 (485) T ss_pred HHHHHHHHHHHhhcchhhhhccCC-cccc-c-cccccccchhhh------cccceeccCCCCceEEeecccchH-HHHHH Confidence 433333344444555655543110 0000 0 000000111211 124466665 56788777654433 36777 Q ss_pred HHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc----------cChhh--hhhhhh Q lcl|Aclame:pro 269 LRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL----------LLPSE--RKQYFI 336 (419) Q Consensus 269 ~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l----------l~~~~--~~~~~~ 336 (419) ++....+++..=++|+..+|.....+ + +..+ ..+....+.-.+.+.+..|...| ..... .....+ T Consensus 313 l~~~i~~~s~~~~~p~~~fg~~~~n~-~-Sg~A-l~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i 389 (485) T protein:vir:24 313 LDQIAKQVAAYTGLPPQYLSTAADNP-A-SAEA-IRAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRM 389 (485) T ss_pred HHHHHHHHhcccCCCHHHhccccCcc-h-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccee Confidence 88888888888899999987543211 1 1111 11222223322333332222211 00000 011223 Q ss_pred hhhhhhhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC--Cccee-----------eeccccc-cc--ccccc Q lcl|Aclame:pro 337 EYNLAGLLRGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK--GGDIY-----------LSPMNMV-DA--SKPQP 398 (419) Q Consensus 337 ~fd~~~~~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~--ggD~~-----------~~~~n~~-~~--~~~~~ 398 (419) .+.+......+..+.++.+.+++.+| +++..-+++.+|+.+-+ ..... .-..+-. +. +.+.. T Consensus 390 ~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (485) T protein:vir:24 390 ETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPNP 469 (485) T ss_pred eEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHHHHHHHhhhhhhHHHhhcccCCCCCCCCCC Confidence 33333445667888888888888765 78888888888886532 11100 0000000 00 00000 Q ss_pred ccCCCCCCccccccch Q lcl|Aclame:pro 399 IPMGKTEPTKAALDEI 414 (419) Q Consensus 399 ~~~~~~~~~~~~~~e~ 414 (419) .+...++++..+++-. T Consensus 470 ~e~~~~~~~~~~~~~a 485 (485) T protein:vir:24 470 TPAPKPQPAIEGGDSA 485 (485) T ss_pred CCCCCCccCCCCCCCC Confidence 1111111111111111 No 169 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=97.94 E-value=1.9e-07 Score=57.47 Aligned_cols=269 Identities=13% Similarity=0.104 Sum_probs=132.4 Q ss_pred hccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC Q lcl|Aclame:pro 43 LSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD 122 (419) Q Consensus 43 ~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~ 122 (419) |. .-.+...|++++=-.|.|.....+ .....+.-+...-.|...+...-++.++++. +.|.- ++-++.+ T Consensus 1 ~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~- 69 (279) T protein:vir:40 1 MS----LFNLSRRAEDVSFSTFTVQDPTTD----LLLGKLLGLVSYFDNVDYSEASKLEDLFYWA-LQGKE-VYRVWYG- 69 (279) T ss_pred Cc----ccccchhhcccceeeeeecCcchh----HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hccce-eehhhhh- Confidence 10 011222333333333333211110 0011222233334555555555555555543 33432 1111111 Q ss_pred CceEEEEEecCceeEEEEccceeEEEEeecc--cccccceEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 123 GVIQGLYPLDNEAVTVMKGPDLKPMYRVAGA--DPLPQRLVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFM 200 (419) Q Consensus 123 G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ 200 (419) |--.--..++.+...+. ...... ..+|-.++..+. ++.+|.-+- ....-++++ .+....-+. T Consensus 70 ~~~~~~~~~~~d~fn~~--------vr~~~~~~vtVP~~Dv~Iie----NPlv~v~~e-e~~kM~~la---~nai~~KLD 133 (279) T protein:vir:40 70 GFKYYAQRVNADQFNIV--------VREPNRREVTIRTNDYEMLL----NPFYGANPQ-RFGVMFGMA---SNGIGRRLD 133 (279) T ss_pred hHHHHHhhcCcchhhhh--------eecCCcceeEeecchhhhhh----cchheeccc-hhhHHHHHH---Hhhhhhhhc Confidence 11000011111111110 000000 111222333332 222333221 222222222 222333337 Q ss_pred ccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 201 NGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIY 280 (419) Q Consensus 201 ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f 280 (419) +.+..+++++++-... .++..++.+..++++..++++=+++.+++.|.++++++.+-.... .+-.++.+...+..+ T Consensus 134 ~~~qIk~fIKTd~d~g---lee~kekaR~rIk~mlalAk~~nGityid~~ddItQL~kDYStsl-k~die~lkS~l~Sq~ 209 (279) T protein:vir:40 134 SQAQIKIYWKTKVSSG---LKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIEIALSEY 209 (279) T ss_pred ccceeeeEEecCcchh---HHHHHHHHHHHHHHHHHHHHhcCCeeeecCCceeEeecccccccc-HHHHHHHHHHHHhhc Confidence 7888999999885432 567778888888888888876667999999999999987665554 445778899999999 Q ss_pred cCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHH------HHhhccChhhhhhhhhhhhhhhhhhccHHHHHHH Q lcl|Aclame:pro 281 KIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQA------KTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAA 354 (419) Q Consensus 281 gvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~------l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~ 354 (419) |||..++ .++..|++..+|+..+|.|++++.+.+ ++.++++...+.+ -+.- T Consensus 210 GinekIL------~GsAtE~q~iAyy~rtVePILkQyek~liY~~E~fv~y~ttta~gg-~~~s---------------- 266 (279) T protein:vir:40 210 GMPRELL------YGQSNEVTIIAFAIQKVLPLLKQHDKNIIFNQENFVAYISTTAKGG-AIES---------------- 266 (279) T ss_pred CCchhhc------cccCchhhhhhHHHhhHHHHHHHhcccccchhhhhhhhheecccCc-cccc---------------- Confidence 9999998 566779999999999999999997763 3344443311100 0000 Q ss_pred HHHHHhCCCcCHHHHH--HHhCCC Q lcl|Aclame:pro 355 YAVGRQWGWLSINDIR--RLENMP 376 (419) Q Consensus 355 ~~~~~~~g~~T~NE~R--~~lGl~ 376 (419) .--.| +-.|-+ T Consensus 267 -----------~~~~~~~~~~~~~ 279 (279) T protein:vir:40 267 -----------KSSKRDSEPVGND 279 (279) T ss_pred -----------ccccccCCCCCCC Confidence 00000 000111 No 170 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=97.93 E-value=1.1e-05 Score=47.86 Aligned_cols=373 Identities=8% Similarity=-0.071 Sum_probs=173.6 Q ss_pred CCccchhcccccc-cccccchHHHHhhcCCC-cc-------c-cccc----CHHHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ-TQPGSGGWVSALLGSAR-SE-------A-GQVV----TPASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-------~-~~~~----~~~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) .++.+........ +.+.- ..+.....+.. .. . .... ....-+.++....+++..+..+-+-|+.+ T Consensus 22 ~~~~~~i~~~~~~~~~~~~-~~~~~yy~g~~~i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g~p~~~ 100 (479) T protein:vir:79 22 INLVKVIEHYILKHRPEKY-KQGEEYYYGNTDVNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVF 100 (479) T ss_pred hHHHHHHHHHHhhhhHHHH-HHHHHHhccCCcccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcCCcee Confidence 2222211111000 00000 01111111100 00 0 0000 01111345667788888888888888776 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce-- Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL-- 144 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~-- 144 (419) ...++. ...+...+.. | ........+..+.+.+|.+|.++..+..|.+. +..++|..+.+..+... T Consensus 101 ~~~~~~------~~~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~v~d~~~~~ 168 (479) T protein:vir:79 101 NADDDN------LTKLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEFK-YVIIPAEEAIPIWDSKRQR 168 (479) T ss_pred ccCCHH------HHHHHHHHHh--c---CHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEccceeEEEEeCCCCC Confidence 322111 1122222321 2 33455567778899999999999888888654 55567777766654321 Q ss_pred ----eEEEEe-ec--cc------ccccce--------------------------------------------EEEecCC Q lcl|Aclame:pro 145 ----KPMYRV-AG--AD------PLPQRL--------------------------------------------VHHVRWM 167 (419) Q Consensus 145 ----~~~~~~-~~--~~------~~~~~~--------------------------------------------i~~~~~~ 167 (419) .+.++. .. .. ...++. |++++ T Consensus 169 ~~~~~ir~y~~~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~-- 246 (479) T protein:vir:79 169 ELVAFIRFYYIEDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFK-- 246 (479) T ss_pred ceEEEEEEEEEeecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEec-- Confidence 011110 00 00 000011 22222 Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec Q lcl|Aclame:pro 168 SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL 247 (419) Q Consensus 168 ~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl 247 (419) +...|.|.+......++....+.....+.+...+.|-.+++-- +++..++..+.+ ..++++.+ T Consensus 247 --nn~~g~sd~~~v~~liDa~d~~~S~~~~~~~~~~~~~~v~~g~---~~~~~~~~~~~~------------~~~~~i~~ 309 (479) T protein:vir:79 247 --NNEKCVSDLTFYKSLIDIYDNNISTLADNLDEIQEVIYVLKEY---PGTSLQEFIDNI------------RYYKSIKV 309 (479) T ss_pred --CCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecC---Cccccccchhhh------------hhccceec Confidence 1235778888888888777766666677777777777665431 122222222211 12346666 Q ss_pred CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH----------HHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 248 QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIE----------HQSLQFVIYTLLPWVKRH 317 (419) Q Consensus 248 ~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i 317 (419) +++.+++.+........+.+..+...+.|+..-++|..-.+..+..++.... ......+...+...++.+ T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li 389 (479) T protein:vir:79 310 DGGGGVDKLEINIPVEAKKELLDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFV 389 (479) T ss_pred CCCCcceEEeccCCHHHHHHHHHHHHHHHHHHhCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7666666555555556677788888999999999886544322221111111 112222333333333333 Q ss_pred HHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeeeccccccccc Q lcl|Aclame:pro 318 EQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLSPMNMVDASK 395 (419) Q Consensus 318 ~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~~~n~~~~~~ 395 (419) ...+...-- .......+.+.+..-...|.++.++.+.++ .|+++...+.+++++-+-+ .-+++-. +.+. T Consensus 390 ~~~~~~~~~--~~~~~~~i~i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l~~v~d~~~E~~ri~~-----E~~~ 460 (479) T protein:vir:79 390 CEYLKISGN--KSYDYKTVQITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDELERLKK-----QEDT 460 (479) T ss_pred HHHHhccCC--CccccccceEEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHH-----HHHH Confidence 322221110 111122344444455667889999988887 4889998888888653211 1110000 0000 Q ss_pred cccccCCCCCCccccccch Q lcl|Aclame:pro 396 PQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 396 ~~~~~~~~~~~~~~~~~e~ 414 (419) ..+....-.+..++..+|. T Consensus 461 ~~~~~~~~~~~~~~~~~e~ 479 (479) T protein:vir:79 461 QKEYDDLIPNNQDGVIDET 479 (479) T ss_pred HHHHHhccCcccCCCcCcC Confidence 0000000111112222222 No 171 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=97.90 E-value=1.2e-05 Score=47.55 Aligned_cols=392 Identities=10% Similarity=0.007 Sum_probs=176.7 Q ss_pred CCccchhccccc-------ccc--c--------ccchHH------HHhhcCCCcc-c----ccccCHHHHhccHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLG-------QTQ--P--------GSGGWV------SALLGSARSE-A----GQVVTPASALSLTVLQNCV 52 (419) Q Consensus 1 M~f~~~~~~~~~-------~~~--~--------~~~~~~------~~~~~~~~~~-~----~~~~~~~~~~~~~~v~~~i 52 (419) |+++.+.+.... ... . .....+ ..++.+-... . .................++ T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTAS 80 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHHH Confidence 765533222111 000 0 001111 1111111000 0 0000111233345556666 Q ss_pred HHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEec Q lcl|Aclame:pro 53 TLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLD 132 (419) Q Consensus 53 ~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~ 132 (419) +..|+-+..=|..+.-. + ......+..+|. . -.....+...+......|.+++.+..+. |.+ .+..++ T Consensus 81 ~~~A~lv~~e~~~i~v~--d---~~~~~~l~~~l~--~---n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~~-~i~~v~ 148 (522) T protein:vir:47 81 KKIASLVYNEQATITTK--N---EILQKFLDDMLT--N---DRFNKNFERYLESCLALGGLAMRPYIDG-DKV-RVAFIQ 148 (522) T ss_pred HHHhhhhcCCcceeecC--C---hHHHHHHHHHHh--h---cchHHHHHHHHHHhhccCCEEEEEEEcC-Cce-EEEEEc Confidence 66776666544443221 1 111223334442 1 2334455666677777788777665543 322 223333 Q ss_pred CceeEEE-Eccc----------------------------------------------eeEEEEee--------cc---- Q lcl|Aclame:pro 133 NEAVTVM-KGPD----------------------------------------------LKPMYRVA--------GA---- 153 (419) Q Consensus 133 ~~~v~~~-~~~~----------------------------------------------~~~~~~~~--------~~---- 153 (419) +..+-+. .+.. +.+.+... |. T Consensus 149 ad~~~P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l 228 (522) T protein:vir:47 149 APVFFPLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNL 228 (522) T ss_pred CCceEEEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCccccc Confidence 3333221 1100 00000000 00 Q ss_pred ------cccccce---------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCce----EE Q lcl|Aclame:pro 154 ------DPLPQRL---------VHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSG----VI 209 (419) Q Consensus 154 ------~~~~~~~---------i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~----~~ 209 (419) ..+.++. ..+++.+.. +...|+|...-+...++...........-++-|-..-. ++ T Consensus 229 ~~~~e~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l 308 (522) T protein:vir:47 229 SELDKYKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLT 308 (522) T ss_pred cccccccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHh Confidence 0011111 123333211 23579999999999998888777777777775553222 23 Q ss_pred EeCCCCCchh-h-HHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc Q lcl|Aclame:pro 210 ERPTDAPALK-D-QASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV 287 (419) Q Consensus 210 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~ 287 (419) +......+.. . ....+.- +..|.+-. .-.+++-+++.++....+-++.+..+...+.|+...|+++..+ T Consensus 309 ~~~~~~~~g~~~~~~~fd~~----~~~f~~~~-----~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf 379 (522) T protein:vir:47 309 QRQYQRPDGTIDFRPRFDVE----QNVYMQIG-----GSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMF 379 (522) T ss_pred ccCCCCCCcccccccccCcc----cceEeecC-----CCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCcccc Confidence 3221111100 0 0000100 01111110 0012334577777777788899999999999999999999999 Q ss_pred ccccCcccccHHHH-------------HHHHHHHHhhHHHHHHHHHHHh-hccChhhhhhhhhhhhhhhhhhccHHHHHH Q lcl|Aclame:pro 288 NELERATFSNIEHQ-------------SLQFVIYTLLPWVKRHEQAKTR-DLLLPSERKQYFIEYNLAGLLRGDQSSRYA 353 (419) Q Consensus 288 g~~~~~~~sn~e~~-------------~~~~~~~~i~P~~~~i~~~l~~-~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~ 353 (419) |..+++. .+..+. ....++.+|..++..+..-... .++.......+.+.++++.-...|.++.++ T Consensus 380 ~~~~~~~-kTAtEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~ 458 (522) T protein:vir:47 380 TFDGQGM-KTATEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELD 458 (522) T ss_pred Ccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHH Confidence 8766543 233333 3344455555555444322211 122111123445666777777789999999 Q ss_pred HHHHHHhCCCcCHHHHHHHh-CCCCCCCcceeeeccc--cccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 354 AYAVGRQWGWLSINDIRRLE-NMPPVKGGDIYLSPMN--MVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 354 ~~~~~~~~g~~T~NE~R~~l-Gl~p~~ggD~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) ...+++.+|+|++-+++.++ |++.-+ .++-+.... ..+..+......+...+.+...+|.| T Consensus 459 ~~~~~v~aG~~s~e~~i~~~~g~~eee-a~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~d~~~ 522 (522) T protein:vir:47 459 YWAKMVAAGFSTKKRAIGKTLNISGVE-AEKELNAINSELLPMNDAELAIYGMHDQNEEKADDKG 522 (522) T ss_pred HHHHHHhcCCCCHHHHHHhcCCCChHH-HHHHHHHHHHhhccCCCCCCCCCCCCCcccccCCCCC Confidence 99999999999999987654 654311 111110000 00000000011111112223334444 No 172 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=97.86 E-value=1.4e-05 Score=47.17 Aligned_cols=384 Identities=10% Similarity=-0.028 Sum_probs=175.3 Q ss_pred ccchhcccccccccccchHHHHhhcCCCc-c----c-ccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCccee Q lcl|Aclame:pro 3 FSRQLLSNLGQTQPGSGGWVSALLGSARS-E----A-GQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) Q Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~-~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~ 76 (419) |...+......+- ..+....-+... . . ........-+.++.....|+..+..+-+-|+++.....+. . T Consensus 1 ~~~~~~~~~~~r~----~~l~~yy~g~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~~--~ 74 (440) T protein:vir:95 1 MLAAFLGSQKQRL----AILASYAQGDNFSILSGHRRLDDEKADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGGS--A 74 (440) T ss_pred ChhhHHHHHHHHH----HHHHHHhccCCcccccccccccccCCcceeecchHHHHHHhhhhheeccCceEeeCCCcc--H Confidence 2222222111110 001111111000 0 0 0000011123456677888888888877787764222111 1 Q ss_pred eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee--E----EEEe Q lcl|Aclame:pro 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK--P----MYRV 150 (419) Q Consensus 77 ~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~--~----~~~~ 150 (419) .....+...+. .. ........+..+.+.+|.+|+++..+..|.+. +..++|..+.+..+.... . .++. T Consensus 75 ~~~~~l~~~~~-~n----~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~~-i~~~~p~~~~~~~d~~~~~~~~~~i~~~~ 148 (440) T protein:vir:95 75 DQLSTIKDIEW-QN----DINALNSDLAFDASVYGRAYEYHFRDKDKVDR-VVLISPLEMFVIRDLTVEQNIIAAVHLPI 148 (440) T ss_pred HHHHHHHHHHH-hc----CHhHHHHHHHHHHhhcCeEEEEEEecCCCceE-EEEEcccceEEEEcCCCCCceEEEEEEEE Confidence 11122333332 11 33345567788899999999999888888764 666788888777654321 1 1111 Q ss_pred eccc----ccccc----------------------------eEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 151 AGAD----PLPQR----------------------------LVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKS 198 (419) Q Consensus 151 ~~~~----~~~~~----------------------------~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 198 (419) .... .+.++ .|+++++ ...|.|.+......++....+.....+. T Consensus 149 ~~~~~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n----~~~g~sd~e~v~~lida~~~~~s~~~~~ 224 (440) T protein:vir:95 149 YADKVNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWN----NRFRMGDYESEISLIDAYDAGQSDTANY 224 (440) T ss_pred ecCceEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeC----CCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 0000 00011 1222221 2357888888888887777777667777 Q ss_pred HHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 FMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIAR 278 (419) Q Consensus 199 ~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 278 (419) .+..+.|-.+++-... ....+++....+++.-.-... ........+++.+++.+........+....+...+.|+. T Consensus 225 ~~~~~~~~~v~~g~~~-~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~ 300 (440) T protein:vir:95 225 MSDLNDAMLLVKGDLD-GIKLSPEDAAKMKDANMLFLK---TGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHR 300 (440) T ss_pred HHHhhcceeeeecccc-cCCCCccchhhhhhccceecc---cccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHH Confidence 7777777777654211 112233444444332110000 000111123334444444444445567788889999999 Q ss_pred HhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhcc Q lcl|Aclame:pro 279 IYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGD 347 (419) Q Consensus 279 ~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d 347 (419) .-++|....+.. +..++...+ ......+...+...++.+...+...- ........+.+.+..-...+ T Consensus 301 ~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~--~~~~~~~~v~i~f~~~~p~~ 378 (440) T protein:vir:95 301 FSRIPNLDDDRFNSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAIN--GPVIEANKLTFTFHPNIPQD 378 (440) T ss_pred HhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcccccccceEEeCCCCCCC Confidence 999987544322 111111111 11122233333333333322222111 01111223444445566778 Q ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC-CcceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 348 QSSRYAAYAVGRQWGWLSINDIRRLENMPPVK-GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 348 ~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~-ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) ..+.++.+.++ +|+++.--+.++++.-..+ .-.+..- -.........+........+.+.| T Consensus 379 ~~~~ad~~~kl--~g~iS~et~~~~l~~~d~~~E~~ri~~---E~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 379 VWTEIKAYIEA--GGEISQETLMENASFTDYKTEHSRILK---QGGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred HHHHHHHHHHH--hccCcHHHHHHhCCCCCcHHHHHHHHH---HHHHhhhhHHhhccCCCCCCcCCC Confidence 99999998887 5789987777887653211 0000000 000000011111111222222222 No 173 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=97.81 E-value=1.7e-05 Score=46.68 Aligned_cols=372 Identities=9% Similarity=-0.024 Sum_probs=164.2 Q ss_pred CCcc--------chhcccccccccccchHHHHhhcCC------Cc---cccc-cc-CHHHHhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MFFS--------RQLLSNLGQTQPGSGGWVSALLGSA------RS---EAGQ-VV-TPASALSLTVLQNCVTLLAESIAQ 61 (419) Q Consensus 1 M~f~--------~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~-~~-~~~~~~~~~~v~~~i~~ia~~ia~ 61 (419) +... +++........+.-. .+.....+- .. ..+. .. -+..-+.++....+++..++.+-+ T Consensus 21 ~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~Yy~g~~~i~~r~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g 99 (474) T protein:vir:95 21 LKPQFETQEEMIIRLIDDHRKQLDKIT-VGQRYYDKDNDIVKQMKKVDVYGNIDYDKPDWRITTNFHQNLVDQKVSYVAS 99 (474) T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHH-HHHHHhcccCchhccccccccccccccccccceeccchHHHHHHHHHhhhcc Confidence 0000 000000000000000 000000000 00 0000 00 001112356677788888888888 Q ss_pred CCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEc Q lcl|Aclame:pro 62 LPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKG 141 (419) Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~ 141 (419) -|+.+...++. ....+..++. | ........+..+.+.+|.||+++..+..|.+. +..++|..+-+..+ T Consensus 100 ~p~~~~~~d~~-----~~~~l~~~~~---n---~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~v~d 167 (474) T protein:vir:95 100 KPVTYSCEDES-----VLKIIHDVLD---T---RWDNKLIDILTATSNKGIDWLQVYINENGEMK-LFRVPAEQAIPIWV 167 (474) T ss_pred CCceeccCchH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhcCcEEEEEEecCCCceE-EEEEcccceEEEEc Confidence 88876322111 1122323332 2 23445566778899999999999888888754 55667777666554 Q ss_pred cce------eEEEEeecc-c---ccccce-----------------------------------EEEecCCCCCCccccc Q lcl|Aclame:pro 142 PDL------KPMYRVAGA-D---PLPQRL-----------------------------------VHHVRWMSINGYTGLS 176 (419) Q Consensus 142 ~~~------~~~~~~~~~-~---~~~~~~-----------------------------------i~~~~~~~~~~~~G~s 176 (419) ... .+.++.... . ...++. +++++ +...|.| T Consensus 168 ~~~~~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----nn~~g~s 243 (474) T protein:vir:95 168 DKEREELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFK----NNPEEVS 243 (474) T ss_pred CCCCCceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeec----CCCCCCC Confidence 321 111110000 0 000001 11111 1235788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeec Q lcl|Aclame:pro 177 PVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPL 256 (419) Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l 256 (419) .+......++....+.....+.+.....|-.++.-- .++..++ +.... ..++++.++++.+++.+ T Consensus 244 d~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~---~~~~~~~----~~~~~--------~~~~~i~~~~~~~~~~l 308 (474) T protein:vir:95 244 DIWMYKSLIDAIDKRLSDAQNMFDESVELIYILKGY---EGQDLEE----FMRGL--------KYYKAINVDGDGGVETI 308 (474) T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecC---Ccccchh----hhhhh--------hccceeeccCCCceeEE Confidence 888888888877766666666667777776655421 1111111 11111 22456767777777666 Q ss_pred CcChhhHHHHHHHHHHHHHHHHHhcCCHHHcc-cccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhc Q lcl|Aclame:pro 257 SMTNVDAALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDL 325 (419) Q Consensus 257 ~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g-~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~l 325 (419) ........+.+..+...+.|+..-++|....+ ..++.++..++ +.....+...+...++.|.+.+. T Consensus 309 ~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g--- 385 (474) T protein:vir:95 309 QVEVPVSSTKEYIDLMRAYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNN--- 385 (474) T ss_pred eecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--- Confidence 65555666778889999999999999863322 11111111111 11112223333333333322111 Q ss_pred cChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----ecccccccccccc Q lcl|Aclame:pro 326 LLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQP 398 (419) Q Consensus 326 l~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~ 398 (419) ...+.....+.| +.-...|..+.++. +.++|+++...+.+++++-+-+ ..+++- ...........+. T Consensus 386 -~~~d~~~i~v~f--~~~~p~d~~e~a~~---~~~~g~iS~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~ 459 (474) T protein:vir:95 386 -LKMDVKDIEISF--NFNRMMNDAEQSQI---IAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGA 459 (474) T ss_pred -CCcccceeeEEe--ccCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccC Confidence 111112223344 33344555555554 5567999999998888763321 111100 0000111111111 Q ss_pred ccCCCCCCccccccc Q lcl|Aclame:pro 399 IPMGKTEPTKAALDE 413 (419) Q Consensus 399 ~~~~~~~~~~~~~~e 413 (419) +...+.++....+.+ T Consensus 460 d~~~~~~~~~~~~~~ 474 (474) T protein:vir:95 460 DGAQQQERSNDKESE 474 (474) T ss_pred CCCcCCCCCccCCCC Confidence 111111111111111 No 174 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=97.81 E-value=1.8e-05 Score=46.64 Aligned_cols=372 Identities=11% Similarity=0.009 Sum_probs=167.9 Q ss_pred CC--ccchhcccccccccccchHHHHhhcCCC-c---ccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGSGGWVSALLGSAR-S---EAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |= +.+++........+.- .-+.....+.. . ..-...-...-+.++....+|+..+..+-+-|+.+...++ T Consensus 1 l~~~~l~~~i~~~~~~~~r~-~~l~~yy~g~~~il~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~--- 76 (429) T protein:vir:98 1 MTKDLLSELIQKHRSFNLSY-SAYKQLYEGDHAILQQKQKEQYKPDNRLVVNFAKYIVDTFNGYFIGVPVQTSHENK--- 76 (429) T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHhccccccccccccccCCCcceeecchHHHHHHHHhhhhcccCceeecCCh--- Confidence 21 0011100000000000 00000110000 0 0000000112234667888899999888888877643211 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce------eEEE Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL------KPMY 148 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~------~~~~ 148 (419) .....+..++. . | ........+..+.+.+|.||+++..+..|.+. +..++|..+.+..+... .+.+ T Consensus 77 --~~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-~~~~~p~~~~~v~dd~~~~~~~~~i~~ 148 (429) T protein:vir:98 77 --QVSNYLELLDG-Y-N---DQDDNNAELSKICSIYGHGYELVFNDENAEAG-ITYLTPLEAFIVYDDSIRQKPLFAVRY 148 (429) T ss_pred --HHHHHHHHHHh-h-c---CHhHHHHHHHHHHhhcCeEEEEEEecCCCcEE-EEEEcccceEEEEeCCCCCceEEEEEE Confidence 11123333332 2 2 33456677888999999999999888888764 55677777766654321 0111 Q ss_pred Eee-ccc----ccccc-------------------------eEEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 RVA-GAD----PLPQR-------------------------LVHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKS 198 (419) Q Consensus 149 ~~~-~~~----~~~~~-------------------------~i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~ 198 (419) +.. +.. +...+ .|+++++ ...|.|.+..+...++....+.....+. T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n----~~~g~sd~e~v~~liD~~d~~~s~~~~~ 224 (429) T protein:vir:98 149 FYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE----NEERQSLLASVVTLINAFNKAISEKAND 224 (429) T ss_pred EEecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEecC----CCCCCCcHHHHHHHHHHHHHHHHHHHHH Confidence 110 000 00000 1222222 2368888888888888777777777777 Q ss_pred HHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCC----CceeeecCcChhhHHHHHHHHHHHH Q lcl|Aclame:pro 199 FMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQE----GMKFKPLSMTNVDAALIDALRLSAL 274 (419) Q Consensus 199 ~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~----g~~~~~l~~~~~d~~~~e~~~~~~~ 274 (419) +...+.|-.+++--. .+++....++. ++++.+++ +.++..+........+....+...+ T Consensus 225 ~~~~~~p~~~i~g~~-----~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 287 (429) T protein:vir:98 225 VEYFADAYLKILGAE-----LDDETLKSLRD------------TRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLEN 287 (429) T ss_pred HHHhcCceeeeecCC-----CCcchhhhHhh------------CceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHH Confidence 777777777765321 12222222211 12344432 2244444444444446667889999 Q ss_pred HHHHHhcCCHHHcccccCcccccHHH----------HHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhh Q lcl|Aclame:pro 275 DIARIYKIPAHMVNELERATFSNIEH----------QSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLL 344 (419) Q Consensus 275 ~Ia~~fgvpp~~~g~~~~~~~sn~e~----------~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~ 344 (419) .|+..-++|..-.+..++.++..++. .....+...+.-.++.+..-++.. .... ....+.+.+.... T Consensus 288 ~i~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-~~~~--d~~~i~v~f~~~~ 364 (429) T protein:vir:98 288 LIFRTAMVANISDESFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSK-IGPK--DWIGIKYKFTRNL 364 (429) T ss_pred HHHHHhCccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCcc--ccccceEEeCCCC Confidence 99999999854332211111111111 111122222222222222111110 0011 1122344445567 Q ss_pred hccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccccccc-CCCCCCcccccc Q lcl|Aclame:pro 345 RGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIP-MGKTEPTKAALD 412 (419) Q Consensus 345 ~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~-~~~~~~~~~~~~ 412 (419) ..|..+.++.+.++ +|+++..-+.+++++-+-+..+ +....-...+.....+ ....++++...+ T Consensus 365 p~~~~~~a~~~~kl--~g~is~et~~~~l~~v~d~~~E--~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 429 (429) T protein:vir:98 365 PANLLEESQIAGNL--AGIVSEETQVGVLSIVENPQKE--IERKNSDKSTLISRQAGGLNGQNTTTILE 429 (429) T ss_pred CcCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHH--HHHHHHHHHHHHHHHHhhhcCCCCCCCCC Confidence 77888899988887 6789987788888764322110 0000000000001111 111111111111 No 175 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=97.74 E-value=2.3e-05 Score=46.03 Aligned_cols=372 Identities=9% Similarity=-0.028 Sum_probs=167.2 Q ss_pred CCcc--chhcccccccccccchHHHHhhcCCC---------ccccc-cc-CHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MFFS--RQLLSNLGQTQPGSGGWVSALLGSAR---------SEAGQ-VV-TPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~-~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) +... .++........+.- .-+.....+-. ...+. .. ....-+.++....+++..++.+-+-|+.+. T Consensus 27 ~~~~~i~~~i~~~~~~~~~~-~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~ 105 (474) T protein:vir:97 27 TQEEMIVRLIDDHRKQLDKI-TVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYS 105 (474) T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhcccchhccccccccccCcceeecchHHHHHHHHHhhhhcCCceec Confidence 2110 11111000000000 00001111000 00000 00 001112356677888888888888888763 Q ss_pred eecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce--e Q lcl|Aclame:pro 68 ERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--K 145 (419) Q Consensus 68 ~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~--~ 145 (419) ..+++ ....+ ..+.. | ........+..+.+.+|.||+++..+..|.+. +..++|..+-+..+... . T Consensus 106 ~~d~~-----~~~~l-~~~~~--n---~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~-i~~~~p~~~~~v~d~~~~~~ 173 (474) T protein:vir:97 106 CEDEN-----VLKVI-HDVLD--T---RWDNKLIDILTATSNKGIDWLQVYINENGEMK-LFRVPAEQAIPIWVDKEREE 173 (474) T ss_pred cCcHH-----HHHHH-HHHHh--c---cHHHHHHHHHHHHhhcCceEEEEEecCCCeeE-EEEEcccceEEEEcCCCCCc Confidence 22111 11122 22221 2 23455566778899999999999888888653 55667777776655321 0 Q ss_pred ----EEEEee-ccc---ccccc-----------------------------------eEEEecCCCCCCcccccHHHHHH Q lcl|Aclame:pro 146 ----PMYRVA-GAD---PLPQR-----------------------------------LVHHVRWMSINGYTGLSPVLLHA 182 (419) Q Consensus 146 ----~~~~~~-~~~---~~~~~-----------------------------------~i~~~~~~~~~~~~G~s~~~~~~ 182 (419) +.++.. +.. ...++ .|+++++ ...|.|.+.... T Consensus 174 ~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n----n~~g~sd~e~v~ 249 (474) T protein:vir:97 174 LKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN----NPEEVSDIWMYK 249 (474) T ss_pred eEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC----CcCCCCcHHHHH Confidence 111100 000 00000 0222222 236888888888 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhh Q lcl|Aclame:pro 183 NAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVD 262 (419) Q Consensus 183 ~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d 262 (419) ..++....+.....+.+...+.|..+++-- .++..++ +.... ..++++.+++|.++..+...... T Consensus 250 ~liDa~n~~~s~~~~~~~~~~~~~lv~~g~---~~~~~~~----~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~ 314 (474) T protein:vir:97 250 SIIDAIDKRLSDAQNMFDESVELIYILKGY---EGEDLEE----FMRGL--------KYYKAINVDGDGGVETIQVEVPV 314 (474) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeeecC---Ccccchh----hhhhh--------hccceeeccCCCceeEEeecCCH Confidence 888877766666666677777776665432 1111112 11111 12356777777666666655555 Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHcc-cccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhh Q lcl|Aclame:pro 263 AALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER 331 (419) Q Consensus 263 ~~~~e~~~~~~~~Ia~~fgvpp~~~g-~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~ 331 (419) ..+.+..+...+.|...-++|..-.. ..++.++..+. ......+...+...++.|..-+.. ..+. T Consensus 315 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~----~~d~ 390 (474) T protein:vir:97 315 SSTKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNL----KTDV 390 (474) T ss_pred HHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----Cccc Confidence 56677788888899999888753221 11111111111 111223333333333333221111 1111 Q ss_pred hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----eccccccccccccccCCCC Q lcl|Aclame:pro 332 KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPIPMGKT 404 (419) Q Consensus 332 ~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~~~~~~ 404 (419) ....+.|+ .-...+..+.++ .+.++|+++..-+++++++-+-+ .-+.+- ........+..+.....+. T Consensus 391 ~~i~v~f~--~~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~ 465 (474) T protein:vir:97 391 KDIEISFN--FNRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQ 465 (474) T ss_pred ceeeEEec--cCcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccC Confidence 22334443 333345555444 45567999999999988763211 111110 0011112222222222222 Q ss_pred CCccccccc Q lcl|Aclame:pro 405 EPTKAALDE 413 (419) Q Consensus 405 ~~~~~~~~e 413 (419) +..++..+| T Consensus 466 ~~~~~~~~e 474 (474) T protein:vir:97 466 EGSNNKESE 474 (474) T ss_pred CCCcccccC Confidence 222222233 No 176 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=97.74 E-value=2.3e-05 Score=46.03 Aligned_cols=372 Identities=9% Similarity=-0.028 Sum_probs=167.2 Q ss_pred CCcc--chhcccccccccccchHHHHhhcCCC---------ccccc-cc-CHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MFFS--RQLLSNLGQTQPGSGGWVSALLGSAR---------SEAGQ-VV-TPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~f~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~-~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) +... .++........+.- .-+.....+-. ...+. .. ....-+.++....+++..++.+-+-|+.+. T Consensus 27 ~~~~~i~~~i~~~~~~~~~~-~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~g~p~~~~ 105 (474) T protein:vir:94 27 TQEEMIVRLIDDHRKQLDKI-TVGQRYYDKDNDIVKQMKKVDVHGNIDYDKPDWRITTNFHQNLVDQKVSYVASKPVTYS 105 (474) T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhcccchhccccccccccCcceeecchHHHHHHHHHhhhhcCCceec Confidence 2110 11111000000000 00001111000 00000 00 001112356677888888888888888763 Q ss_pred eecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce--e Q lcl|Aclame:pro 68 ERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--K 145 (419) Q Consensus 68 ~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~--~ 145 (419) ..+++ ....+ ..+.. | ........+..+.+.+|.||+++..+..|.+. +..++|..+-+..+... . T Consensus 106 ~~d~~-----~~~~l-~~~~~--n---~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~~-i~~~~p~~~~~v~d~~~~~~ 173 (474) T protein:vir:94 106 CEDEN-----VLKVI-HDVLD--T---RWDNKLIDILTATSNKGIDWLQVYINENGEMK-LFRVPAEQAIPIWVDKEREE 173 (474) T ss_pred cCcHH-----HHHHH-HHHHh--c---cHHHHHHHHHHHHhhcCceEEEEEecCCCeeE-EEEEcccceEEEEcCCCCCc Confidence 22111 11122 22221 2 23455566778899999999999888888653 55667777776655321 0 Q ss_pred ----EEEEee-ccc---ccccc-----------------------------------eEEEecCCCCCCcccccHHHHHH Q lcl|Aclame:pro 146 ----PMYRVA-GAD---PLPQR-----------------------------------LVHHVRWMSINGYTGLSPVLLHA 182 (419) Q Consensus 146 ----~~~~~~-~~~---~~~~~-----------------------------------~i~~~~~~~~~~~~G~s~~~~~~ 182 (419) +.++.. +.. ...++ .|+++++ ...|.|.+.... T Consensus 174 ~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n----n~~g~sd~e~v~ 249 (474) T protein:vir:94 174 LKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKN----NPEEVSDIWMYK 249 (474) T ss_pred eEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecC----CcCCCCcHHHHH Confidence 111100 000 00000 0222222 236888888888 Q ss_pred HHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhh Q lcl|Aclame:pro 183 NAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVD 262 (419) Q Consensus 183 ~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d 262 (419) ..++....+.....+.+...+.|..+++-- .++..++ +.... ..++++.+++|.++..+...... T Consensus 250 ~liDa~n~~~s~~~~~~~~~~~~~lv~~g~---~~~~~~~----~~~~~--------~~~~~i~~~~~~~~~~l~~~~~~ 314 (474) T protein:vir:94 250 SIIDAIDKRLSDAQNMFDESVELIYILKGY---EGEDLEE----FMRGL--------KYYKAINVDGDGGVETIQVEVPV 314 (474) T ss_pred HHHHHHHHHHHHHHHHHHHhcCceeeeecC---Ccccchh----hhhhh--------hccceeeccCCCceeEEeecCCH Confidence 888877766666666677777776665432 1111112 11111 12356777777666666655555 Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHcc-cccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhh Q lcl|Aclame:pro 263 AALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER 331 (419) Q Consensus 263 ~~~~e~~~~~~~~Ia~~fgvpp~~~g-~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~ 331 (419) ..+.+..+...+.|...-++|..-.. ..++.++..+. ......+...+...++.|..-+.. ..+. T Consensus 315 ~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~----~~d~ 390 (474) T protein:vir:94 315 SSTKEYIDLMRVYIMEFGQGVDFQTDKFGSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNL----KTDV 390 (474) T ss_pred HHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----Cccc Confidence 56677788888899999888753221 11111111111 111223333333333333221111 1111 Q ss_pred hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----eccccccccccccccCCCC Q lcl|Aclame:pro 332 KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPIPMGKT 404 (419) Q Consensus 332 ~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~~~~~~ 404 (419) ....+.|+ .-...+..+.++ .+.++|+++..-+++++++-+-+ .-+.+- ........+..+.....+. T Consensus 391 ~~i~v~f~--~~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~ 465 (474) T protein:vir:94 391 KDIEISFN--FNRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQ 465 (474) T ss_pred ceeeEEec--cCcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccC Confidence 22334443 333345555444 45567999999999988763211 111110 0011112222222222222 Q ss_pred CCccccccc Q lcl|Aclame:pro 405 EPTKAALDE 413 (419) Q Consensus 405 ~~~~~~~~e 413 (419) +..++..+| T Consensus 466 ~~~~~~~~e 474 (474) T protein:vir:94 466 EGSNNKESE 474 (474) T ss_pred CCCcccccC Confidence 222222233 No 177 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=97.73 E-value=2.5e-05 Score=45.86 Aligned_cols=393 Identities=9% Similarity=-0.046 Sum_probs=177.7 Q ss_pred CCccchhccc----ccccccccchHHHHhhcCCC--ccccc----ccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFSRQLLSN----LGQTQPGSGGWVSALLGSAR--SEAGQ----VVTPASALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~ 70 (419) +.....+..- .....+.- .-+...+-+.. ..... ...+..-+.++....+|+..+..+-+-|+++...+ T Consensus 38 ~~~~~~i~~~i~~~~~~~~~r~-~~~~~yY~g~~~~i~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~~~~ 116 (501) T protein:vir:96 38 VNNWELLKNFINHHKLRQAPRI-QELLDYARGENHDVLKSGRRKDNEMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDD 116 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcccCccccCccccccceeecchHHHHHHHHhhhhcccCeeEeeCC Confidence 1111111000 00000000 00011111110 00000 00111224567778889998888888888875433 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccc--ee--- Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD--LK--- 145 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~--~~--- 145 (419) ++. .+.+...|.. ....-........+..+++.+|.||+++.++..|.+. +..++|..+.+..+.. +. T Consensus 117 ~~~-----~~~~~~~l~~-~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~~-i~~~~p~~~~~v~d~~~~~~~~~ 189 (501) T protein:vir:96 117 NDD-----NSQNDDAIKR-IGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDETR-IKRLSPLETFVIYDNSLEDNSIA 189 (501) T ss_pred ccc-----hhHHHHHHHH-HHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCceE-EEEEccceeEEEEcCCCCCceEE Confidence 221 1222233321 1122244567778899999999999999988888754 5667888887776542 11 Q ss_pred -EEEEee-c---cc----ccccce------------------------EEEecCCCCCCcccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 146 -PMYRVA-G---AD----PLPQRL------------------------VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQ 192 (419) Q Consensus 146 -~~~~~~-~---~~----~~~~~~------------------------i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~ 192 (419) +.++.. . .. ...++. |++++ +...|.|.+..+...++....+. T Consensus 190 ~v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~----nn~~g~sd~e~v~~liDa~d~~~ 265 (501) T protein:vir:96 190 AVRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYL----NNIDGIGDYETELYLIDLYDSAE 265 (501) T ss_pred EEEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEec----CCccCCCchhhhHHHHHHHHHHH Confidence 111110 0 00 000011 22222 12368888888888888777766 Q ss_pred HHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHH Q lcl|Aclame:pro 193 QYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLS 272 (419) Q Consensus 193 ~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 272 (419) ....+.+...+.|-.++.-.... . ..+....++.. ..-.....+.......+.++.-+.....+..+....+.. T Consensus 266 s~~~~~~~~~~~~~l~i~G~~~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 339 (501) T protein:vir:96 266 SDTANHMSDMADAILAIYGDLAL--P-KGMQASDMKRT---RLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRL 339 (501) T ss_pred HHHHHHHHHhcCceeeeeccccc--C-cccchhhhhhc---CeeeecccccccccccCcceeeEeccCCHHHHHHHHHHH Confidence 66777777777776666432111 1 11222222110 000000011111123344555555444555677778888 Q ss_pred HHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhh Q lcl|Aclame:pro 273 ALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLA 341 (419) Q Consensus 273 ~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~ 341 (419) .+.|+..-++|....+.. ++.++..++ ......+...+...++.+..-+...--.. ......+.+.+. T Consensus 340 ~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~-~~d~~~i~i~f~ 418 (501) T protein:vir:96 340 NRDIHIFTNTPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFK-DFDESLLKITFT 418 (501) T ss_pred HHHHHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccceEEeC Confidence 999999999986554322 111111111 11112233333333322222222111000 111112334445 Q ss_pred hhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccc-------ee---eeccccccccccccccCCCCCCccc Q lcl|Aclame:pro 342 GLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGD-------IY---LSPMNMVDASKPQPIPMGKTEPTKA 409 (419) Q Consensus 342 ~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD-------~~---~~~~n~~~~~~~~~~~~~~~~~~~~ 409 (419) .....+..+.++.+.++. |+++..-+.+++++-.-| ..+ .. ..+..+.+....... +.++. T Consensus 419 ~~~p~n~~e~ad~~~kl~--g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~-----~~~e~ 491 (501) T protein:vir:96 419 PNLPKSLNEQVSILTGLG--GQVSQETALSLSGLVESPNEELDKINKEMSEIDFKGYSNDFNEHVGKYTD-----EVKET 491 (501) T ss_pred CCCCcCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHhhccccccchhhcccccCC-----cCCCC Confidence 566778899999888884 789988888888663211 111 10 111111111111111 11112 Q ss_pred cccchhcccC Q lcl|Aclame:pro 410 ALDEIGRILS 419 (419) Q Consensus 410 ~~~e~~~~~~ 419 (419) ..+|.++..- T Consensus 492 ~~d~~e~~~~ 501 (501) T protein:vir:96 492 HTDDFEREYE 501 (501) T ss_pred CCCccccccC Confidence 2222222222 No 178 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=97.72 E-value=2.5e-05 Score=45.77 Aligned_cols=397 Identities=10% Similarity=0.006 Sum_probs=174.2 Q ss_pred CC--------ccchhcc----cccccccccchHHHHhhcCC-Ccc-----cccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MF--------FSRQLLS----NLGQTQPGSGGWVSALLGSA-RSE-----AGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~--------f~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |+ ..+.+.+ ......+.- .-+.....+- ... .....-...-+.+......++..+..+-+- T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~-~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~ 109 (511) T protein:vir:96 31 YDGTESDLLQNVNEVSKYIEHHMDYQRPRL-KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGN 109 (511) T ss_pred cchhhhhhhccHHHHHHHHHHHHHhhHHHH-HHHHHHhcccCccccccCcCcccccCcceeecchHHHHHHHHHhhhccC Confidence 11 0011110 000000000 0011111110 000 000000111123466777888888888888 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP 142 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~ 142 (419) |+.+...+++ ....+..++. . -........+..+++.+|.||+++.++..|.+ .+..++|..+.+..+. T Consensus 110 p~~~~~~~~~-----~~~~l~~~~~-~----n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vydd 178 (511) T protein:vir:96 110 PIQYQDDDKD-----VLEAIEAFND-L----NDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDN 178 (511) T ss_pred CceeecCchH-----HHHHHHHHHh-h----cCHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcC Confidence 8886422111 1123333332 1 23445667788899999999999998888865 4566777777766543 Q ss_pred ce--e----EEEEee-c-----c------cccccceEEEecC-----------------CC---------CCCcccccHH Q lcl|Aclame:pro 143 DL--K----PMYRVA-G-----A------DPLPQRLVHHVRW-----------------MS---------INGYTGLSPV 178 (419) Q Consensus 143 ~~--~----~~~~~~-~-----~------~~~~~~~i~~~~~-----------------~~---------~~~~~G~s~~ 178 (419) .. . +.++.. . . ....++.+++... ++ .+...|.|.+ T Consensus 179 ~~~~~~~~~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~ 258 (511) T protein:vir:96 179 TIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDY 258 (511) T ss_pred CCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCch Confidence 21 1 111100 0 0 0001111111100 00 0123578888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccc-cccCcceecCCCceeeecC Q lcl|Aclame:pro 179 LLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGS-GNAKKVALLQEGMKFKPLS 257 (419) Q Consensus 179 ~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~n~g~~~vl~~g~~~~~l~ 257 (419) ..+...++....+..-..+.+...+.|-.+++-.... +.+......+.-.-..... .-.+...-.+++.++..+. T Consensus 259 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (511) T protein:vir:96 259 EKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNL----DPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIY 334 (511) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhCceeeeecCccC----CchhhcccccccceecccccccccccccCCCCcceeEEe Confidence 8888888877776666677777777666665532211 1122221111000000000 0000111223455666666 Q ss_pred cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhcc Q lcl|Aclame:pro 258 MTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLL 326 (419) Q Consensus 258 ~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll 326 (419) .......+....+...+.|+..-++|....+.. ++.++..+. ......+...+.-.++.|..-+..+.- T Consensus 335 ~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~ 414 (511) T protein:vir:96 335 KQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS 414 (511) T ss_pred ecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Confidence 555566678888899999999999987544322 111111111 111122333333333333322221110 Q ss_pred ChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cccee------eeccccccc-cccc Q lcl|Aclame:pro 327 LPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIY------LSPMNMVDA-SKPQ 397 (419) Q Consensus 327 ~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~------~~~~n~~~~-~~~~ 397 (419) .........+.+.++.-...|..+.++.+.++ .|+++.-.+.+++++-.-+ ..+++ ......... .... T Consensus 415 ~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~G~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 492 (511) T protein:vir:96 415 IDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPR 492 (511) T ss_pred cccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCC Confidence 00011111234444455667888888888877 6899999999988764321 11100 000000000 0111 Q ss_pred cccCCCCCC-ccccccchh Q lcl|Aclame:pro 398 PIPMGKTEP-TKAALDEIG 415 (419) Q Consensus 398 ~~~~~~~~~-~~~~~~e~~ 415 (419) +...+++++ ++...+|.+ T Consensus 493 ~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:96 493 DINDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCCcccccccccC Confidence 111111121 112222222 No 179 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=97.70 E-value=2.7e-05 Score=45.62 Aligned_cols=377 Identities=7% Similarity=-0.036 Sum_probs=172.3 Q ss_pred CC--------ccchhcc---cccccccccchHHHHhhcCCC-------cc--c--ccccCHHHHhccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MF--------FSRQLLS---NLGQTQPGSGGWVSALLGSAR-------SE--A--GQVVTPASALSLTVLQNCVTLLAES 58 (419) Q Consensus 1 M~--------f~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~--~--~~~~~~~~~~~~~~v~~~i~~ia~~ 58 (419) |+ ..+.+.+ ......+.- .-+.....+-. .. . ........-+.++....+|+..++. T Consensus 35 ~~~~~~~~~~~~~~i~~~i~~~~~~~~r~-~~l~~YY~g~~~I~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~y 113 (492) T protein:vir:94 35 IVRTNNKPETLEEMIVRYIKQHLEKLPEI-SIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSY 113 (492) T ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhccccccccccccccccccccccccccccccchHHHHHHHHHhh Confidence 21 1111111 000000000 00111111100 00 0 0000111123467778889999988 Q ss_pred hccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEE Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTV 138 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~ 138 (419) +-+-|+.+...+++ ....+..++. | ........+..+.+.+|.+|+++..+..|.+ .+..++|..+.+ T Consensus 114 l~G~p~~~~~~d~~-----~~~~l~~~~~---n---~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~ 181 (492) T protein:vir:94 114 IVGKPIAFKHTDDE-----VVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIP 181 (492) T ss_pred hcccCceeccCchH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEE Confidence 88888776322111 1122323332 2 2334566788899999999999988888875 366678887776 Q ss_pred EEccc--ee----EEEEeeccc----ccccce----------------------EEEecCCCC---------CCcccccH Q lcl|Aclame:pro 139 MKGPD--LK----PMYRVAGAD----PLPQRL----------------------VHHVRWMSI---------NGYTGLSP 177 (419) Q Consensus 139 ~~~~~--~~----~~~~~~~~~----~~~~~~----------------------i~~~~~~~~---------~~~~G~s~ 177 (419) .++.. .. +.++..... ...+.. ..+...+++ +...|.|. T Consensus 182 v~d~~~~~~~~a~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd 261 (492) T protein:vir:94 182 IWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISD 261 (492) T ss_pred EEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCc Confidence 65432 10 111100000 000000 011111111 12357888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecC Q lcl|Aclame:pro 178 VLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLS 257 (419) Q Consensus 178 ~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~ 257 (419) +......++....+..-..+.+...+.|-.+++--. .+ ....+...+ ..++++.++++.++..+. T Consensus 262 ~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~---~~----~~~~~~~~~--------~~~~~~~~~~~~~~~~l~ 326 (492) T protein:vir:94 262 IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---DQ----ELPEFKRLL--------RYYGAIKVSDNGGVDTIQ 326 (492) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCC---cc----cchhhHHHH--------hhccceecCCCCcceeEe Confidence 888888888877777777777777777766654321 11 111222221 113455566665555555 Q ss_pred cChhhHHHHHHHHHHHHHHHHHhcCCHHHccc-ccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhcc Q lcl|Aclame:pro 258 MTNVDAALIDALRLSALDIARIYKIPAHMVNE-LERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLL 326 (419) Q Consensus 258 ~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~-~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll 326 (419) .......+....+...+.|+..-++|....+. .++.++..++ ......+...+...++.+...+ T Consensus 327 ~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~----- 401 (492) T protein:vir:94 327 VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHF----- 401 (492) T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCcCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----- Confidence 44445556777788888999998887543221 1111111111 1111122222222222222211 Q ss_pred ChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----eccccccccccccc Q lcl|Aclame:pro 327 LPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPI 399 (419) Q Consensus 327 ~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~ 399 (419) .... ....+.+.++.-...+..+.++.+.++. |+++..-+++++++-+-+ ..++.- .............. T Consensus 402 ~~~~-~~~~i~v~f~~~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~ 478 (492) T protein:vir:94 402 DIKG-EHKDVDISFNYNKVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGAD 478 (492) T ss_pred cCCc-ccceeeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCC Confidence 1111 1122334444556678888999888874 789998899988774321 111110 00111111111111 Q ss_pred cCCCCCCccccccc Q lcl|Aclame:pro 400 PMGKTEPTKAALDE 413 (419) Q Consensus 400 ~~~~~~~~~~~~~e 413 (419) ...+.+..++.++| T Consensus 479 ~~~~~~~~~~~e~e 492 (492) T protein:vir:94 479 SAQQQERSNNKESE 492 (492) T ss_pred CCccccCCccccCC Confidence 11122222222233 No 180 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=97.68 E-value=2.9e-05 Score=45.47 Aligned_cols=373 Identities=6% Similarity=-0.045 Sum_probs=171.7 Q ss_pred CCccchhcccccccccccchH---HHHhhcCCC-------cc--c--ccccCHHHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGW---VSALLGSAR-------SE--A--GQVVTPASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------~~--~--~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) +-.++.+......... .... +.....+-. .. . ........-+.++....+|+..+..+-+-|+.+ T Consensus 23 ~~~~~~i~~~i~~~~~-~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 101 (472) T protein:vir:93 23 ETLEEMIVRYIKQHLE-KLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 101 (472) T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHhccccccccccchhhccccccccccccccccchHHHHHHHHhhhhcccCeee Confidence 1212211111000000 0000 011111100 00 0 000001111235677888999998888888776 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccc--e Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD--L 144 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~--~ 144 (419) ...+++ ....+..++. | ........+..+.+.+|.||+++..+..|.+. +..++|..+.+.++.. . T Consensus 102 ~~~d~~-----~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~~-i~~~~p~~~~~i~d~~~~~ 169 (472) T protein:vir:93 102 KHTDDE-----VVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPIWTDKEHE 169 (472) T ss_pred ccCChH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhcCeEEEEEEECCCCceE-EEEEcccceEEEEcCCCCC Confidence 322111 1122323332 2 23345556788899999999999888888754 6667887777765432 1 Q ss_pred e----EEEEee-cc---cccccc-----------------------------------eEEEecCCCCCCcccccHHHHH Q lcl|Aclame:pro 145 K----PMYRVA-GA---DPLPQR-----------------------------------LVHHVRWMSINGYTGLSPVLLH 181 (419) Q Consensus 145 ~----~~~~~~-~~---~~~~~~-----------------------------------~i~~~~~~~~~~~~G~s~~~~~ 181 (419) . +.++.. .. ....+. .|+.+++ ...|.|.+... T Consensus 170 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~n----n~~g~s~~e~v 245 (472) T protein:vir:93 170 ELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKN----NDLEISDIFMY 245 (472) T ss_pred ceEEEEEEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecC----CCCCCCchhhh Confidence 0 100000 00 000000 0222221 23588888888 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChh Q lcl|Aclame:pro 182 ANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNV 261 (419) Q Consensus 182 ~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~ 261 (419) ...++....+.....+.+...+.|..+++--. . +....+...+. ..+++.++++.++..+..... T Consensus 246 ~~liDa~~~~~s~~~~~~~~~~~~~~~~~g~~---~----~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~ 310 (472) T protein:vir:93 246 KTLIDAYNRRLSDLSNTFKDSNELTYVLTNYD---D----QELPEFKRLLR--------YYGAIKVSDNGGVDTIQVEVP 310 (472) T ss_pred HHHHHHHHHHHHHHHHHHHHhcCceeEeecCC---c----ccchhhHHHHh--------hccccccCCCCcceeEeecCC Confidence 88887777666666777777777766664321 1 11112222111 123555666656665555556 Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHHH----------HHHHHHHHHhhHHHHHHHHHHHhhccChhh Q lcl|Aclame:pro 262 DAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIEH----------QSLQFVIYTLLPWVKRHEQAKTRDLLLPSE 330 (419) Q Consensus 262 d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e~----------~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~ 330 (419) ...+....+...+.|+..-++|....+.. ++.++..++. .....+...+.-.++.+... +.... T Consensus 311 ~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~-----~~~~~ 385 (472) T protein:vir:93 311 VENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH-----FDIKG 385 (472) T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCCc Confidence 67778888999999999999986543321 1111111111 11112222222222222211 11111 Q ss_pred hhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----eccccccccccccccCCC Q lcl|Aclame:pro 331 RKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPIPMGK 403 (419) Q Consensus 331 ~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~~~~~ 403 (419) ....+.+.++.....|..+.++.+.++ .|+++..-+.+++++-.-+ ..+++- ...........+.....+ T Consensus 386 -~~~~i~v~f~~~~p~~~~~~~~~~~k~--~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~~~~ 462 (472) T protein:vir:93 386 -EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADGAQQ 462 (472) T ss_pred -ccceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccCcCcccCCCCCC Confidence 112233333455667888888888876 5789988888888763321 111110 001111111111111111 Q ss_pred CCCccccccchhc Q lcl|Aclame:pro 404 TEPTKAALDEIGR 416 (419) Q Consensus 404 ~~~~~~~~~e~~~ 416 (419) .+.. .++..+ T Consensus 463 ~~~~---~~~~~e 472 (472) T protein:vir:93 463 QERS---NNKESE 472 (472) T ss_pred CCCC---CcccCC Confidence 1111 222222 No 181 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=97.68 E-value=3e-05 Score=45.40 Aligned_cols=397 Identities=10% Similarity=0.006 Sum_probs=174.4 Q ss_pred CCccchhccc----ccccccccchHHHHhhcCCCc------ccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFSRQLLSN----LGQTQPGSGGWVSALLGSARS------EAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~ 70 (419) |...+.+.+- .....+.- .-+.....+... ......-...-+.++.....++..+..+-+-|+.+...+ T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~-~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d 117 (511) T protein:vir:10 39 LQNVNEVSKCIEHHMDYQRPRL-KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD 117 (511) T ss_pred ccCHHHHHHHHHHHHHhhHHHH-HHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeecCc Confidence 1111111110 00000000 001111111100 000000011123346677888888888888888864321 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce--e--- Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--K--- 145 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~--~--- 145 (419) ++ ....+..++. . | ........+..+++.+|.||.++.++..|.+ .+..++|..+.+..+... . T Consensus 118 ~~-----~~~~l~~~~~-~-n---~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~ 186 (511) T protein:vir:10 118 KD-----VLEAIEAFND-L-N---DVESHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIA 186 (511) T ss_pred hH-----HHHHHHHHHh-h-c---CHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEE Confidence 11 1123333332 2 2 3344566788899999999999998888865 355567777766655321 0 Q ss_pred -EEEEeec-----c-------cccccceEEEec-----------------CCC---------CCCcccccHHHHHHHHHH Q lcl|Aclame:pro 146 -PMYRVAG-----A-------DPLPQRLVHHVR-----------------WMS---------INGYTGLSPVLLHANAIG 186 (419) Q Consensus 146 -~~~~~~~-----~-------~~~~~~~i~~~~-----------------~~~---------~~~~~G~s~~~~~~~~i~ 186 (419) +.++... . ..+.++.+++.. .++ .+...|.|.+..+...++ T Consensus 187 ~vr~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liD 266 (511) T protein:vir:10 187 GVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLID 266 (511) T ss_pred EEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHH Confidence 1111000 0 001111111110 000 012357888888888888 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhcccc-ccCcceecCCCceeeecCcChhhHHH Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSG-NAKKVALLQEGMKFKPLSMTNVDAAL 265 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-n~g~~~vl~~g~~~~~l~~~~~d~~~ 265 (419) ....+..-..+.+...+.|-.+++-.... +.+.....++.-.-...... -.+...-.++|.++..+.....+..+ T Consensus 267 a~d~~~S~~~~~~~~~~~~~lv~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 342 (511) T protein:vir:10 267 LYDNAESDTANYMSDLNDAMLLIKGNLNL----DPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGT 342 (511) T ss_pred HHHHHHHHHHHHHHHhhCceeeeeccccC----CchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHH Confidence 77766666667777777676665532211 11222222111000000000 00111122445666666655556667 Q ss_pred HHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhh Q lcl|Aclame:pro 266 IDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQY 334 (419) Q Consensus 266 ~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~ 334 (419) ....+...+.|+..-++|....+.. ++.++..+. .....++...+.-.++.+...+...--........ T Consensus 343 e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~~~d~~ 422 (511) T protein:vir:10 343 EAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFN 422 (511) T ss_pred HHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccc Confidence 7888889999999999987543221 111111111 11222333333333333322222111000011112 Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cccee------eeccccc-cccccccccCCCCC Q lcl|Aclame:pro 335 FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIY------LSPMNMV-DASKPQPIPMGKTE 405 (419) Q Consensus 335 ~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~------~~~~n~~-~~~~~~~~~~~~~~ 405 (419) .+.+.+..-...|..+.++.+.++. |+++.--+.+++++-+-+ .-+++ ....... ......+....+++ T Consensus 423 ~i~i~f~~~~p~d~~~~~~~~~kl~--G~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (511) T protein:vir:10 423 TVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD 500 (511) T ss_pred eeeEEeCCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCC Confidence 3444455566778888999888874 789998888888763311 11100 0000000 00011111111111 Q ss_pred C-ccccccchh Q lcl|Aclame:pro 406 P-TKAALDEIG 415 (419) Q Consensus 406 ~-~~~~~~e~~ 415 (419) + ++...+|.+ T Consensus 501 ~~~~~~~~~~~ 511 (511) T protein:vir:10 501 DDTKDTVDKKE 511 (511) T ss_pred CcccCcccccC Confidence 1 112222222 No 182 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=97.66 E-value=3.1e-05 Score=45.30 Aligned_cols=370 Identities=10% Similarity=-0.022 Sum_probs=161.5 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc--ccccccC---HHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcce Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVT---PASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRK 75 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~ 75 (419) .+..+...... ...+. -..+....-+... .....+. ...-..+.....+|+..+..+--..|. . .+ T Consensus 7 ~~i~~l~~~~~-~~~~r-~~~l~~Yy~G~~~i~~~~~~~~~~~~~~k~~~n~~~~ivd~~~~~l~~~g~~---~-~d--- 77 (441) T protein:vir:80 7 ALIEGMYDRIQ-RLSSW-HCCIEGYYEGSNRVRDLGVAIPPELQRVQTVVSWPGIAVDALEERLDWLGWT---N-GD--- 77 (441) T ss_pred HHHHHHHHHHH-HHHHH-HHHHHHHHhcCCcchhcCcccchhhhhhhhhcchHHHHHHHHHhhhcccccc---C-CC--- Confidence 11111111000 00000 0001111111100 0111111 111122344556666666554222221 1 11 Q ss_pred eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EEEE Q lcl|Aclame:pro 76 PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PMYR 149 (419) Q Consensus 76 ~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~~~ 149 (419) ...+..++. . | +...+...+..+.+.+|.||+++.++..|.+ .+.+++|..+.+.++.... ..++ T Consensus 78 ---~~~l~~i~~-~-n---~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~~~~~ 148 (441) T protein:vir:80 78 ---GYGLDGVYA-A-N---RLATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKFSADGSRLDAGLVVQQ 148 (441) T ss_pred ---hHHHHHHHH-h-c---CHHHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEEeCCCCceeEEEEEEE Confidence 123444443 2 2 4566778888999999999999999888877 4678888888776654310 0000 Q ss_pred ------------eecc---------c----------ccccceEEEecCCC-CCCcccccHHHH-HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 150 ------------VAGA---------D----------PLPQRLVHHVRWMS-INGYTGLSPVLL-HANAIGHAQAIQQYAG 196 (419) Q Consensus 150 ------------~~~~---------~----------~~~~~~i~~~~~~~-~~~~~G~s~~~~-~~~~i~~~~~~~~~~~ 196 (419) ..+. . .+..=.|+++.+++ ....+|.|.+.. +...++.......... T Consensus 149 ~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~s~~~ 228 (441) T protein:vir:80 149 TCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTLLGQS 228 (441) T ss_pred EecCceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHHHHHH Confidence 0000 0 00001134444333 344678886543 4444544444444444 Q ss_pred HHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCC-----ceeeecCcChhhHHHHHHHHH Q lcl|Aclame:pro 197 KSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEG-----MKFKPLSMTNVDAALIDALRL 271 (419) Q Consensus 197 ~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g-----~~~~~l~~~~~d~~~~e~~~~ 271 (419) ....-.+.|..++.- . . .++...+.++. ..++++.++.+ .++.++.....+ .+++..+. T Consensus 229 ~~~~~~~~~~~~i~G--~-~--~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 292 (441) T protein:vir:80 229 VNRDFYAYPQRWVTG--V-S--ADEFSQPGWVL----------SMASVWAVDKDDDGDTPNVGSFPVNSPT-PYSDQMRL 292 (441) T ss_pred HHHHhhcCceeeeec--C-C--ccccccchhhh----------cccccccCCCCCCCCcceeEecCccchH-HHHHHHHH Confidence 444545566555541 1 1 11111111111 12335554432 455554433322 36778888 Q ss_pred HHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc----------cChhhh---hhhhhhh Q lcl|Aclame:pro 272 SALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL----------LLPSER---KQYFIEY 338 (419) Q Consensus 272 ~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l----------l~~~~~---~~~~~~f 338 (419) ....|+..-++|+..+|.....+ + +..+.+ +....+.-.+...+..+...| +..... ....+.+ T Consensus 293 ~i~~~~~~~~~p~~~~g~~~~~~-~-Sg~Al~-~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~~i~~ 369 (441) T protein:vir:80 293 LAQLTAGEAAVPERYFGFITSNP-P-SGEALA-AEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVDEADFFGDVGL 369 (441) T ss_pred HHHHHhcccCCCHHHhccCCCcc-h-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccceeeeE Confidence 89999999999999887644321 1 111111 222222222222222222111 110000 0123344 Q ss_pred hhhhhhhccHHHHHHHHHHHHhCCCcC--HHHHHHHhCCCCCCCcceeeecccccccccccc-ccCCCCCCccccccchh Q lcl|Aclame:pro 339 NLAGLLRGDQSSRYAAYAVGRQWGWLS--INDIRRLENMPPVKGGDIYLSPMNMVDASKPQP-IPMGKTEPTKAALDEIG 415 (419) Q Consensus 339 d~~~~~~~d~~~~~~~~~~~~~~g~~T--~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~-~~~~~~~~~~~~~~e~~ 415 (419) .+......+..+.++.+.+++.+|+.. ..-+++.+|+.+-+-- +. ..... .+....+.........+ T Consensus 370 ~f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e~~-~~---------~~e~~e~~~~~~~~~~~~~~~~~ 439 (441) T protein:vir:80 370 RWRDASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQVE-AV---------MRHRAESSDPLAVLAGAISRQTN 439 (441) T ss_pred EeCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHHHH-HH---------HHHHHHHHHHHHHHhhhhhcccc Confidence 444556778889999999999998754 4457788887653210 00 00000 00000011111122223 Q ss_pred cc Q lcl|Aclame:pro 416 RI 417 (419) Q Consensus 416 ~~ 417 (419) +| T Consensus 440 ~~ 441 (441) T protein:vir:80 440 EV 441 (441) T ss_pred cC Confidence 33 No 183 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=97.66 E-value=3.2e-05 Score=45.23 Aligned_cols=388 Identities=10% Similarity=-0.018 Sum_probs=167.0 Q ss_pred CCccchhcc---cc-----cccccccchH------------------HHHhh-cCCCcc-cccc------cCHHHHhccH Q lcl|Aclame:pro 1 MFFSRQLLS---NL-----GQTQPGSGGW------------------VSALL-GSARSE-AGQV------VTPASALSLT 46 (419) Q Consensus 1 M~f~~~~~~---~~-----~~~~~~~~~~------------------~~~~~-~~~~~~-~~~~------~~~~~~~~~~ 46 (419) |...+..+. +. .......... +.... |..... .... .....-+.++ T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~i~~~~~~~~~~~~~~~~ki~~n 85 (481) T protein:vir:10 6 INNINTKFSPLANDDFVVSDLAELLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTDILAGERRLQKYGDKADHRAVHN 85 (481) T ss_pred eehhchhcccccCceeeeecchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCccccccccccccceeecc Confidence 221111000 00 0000000000 11111 111000 0000 0011123456 Q ss_pred HHHHHHHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceE Q lcl|Aclame:pro 47 VLQNCVTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQ 126 (419) Q Consensus 47 ~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~ 126 (419) ....+|+..+..+.+-|+.+...++. ..+.+..++. . .....+...+..+.+.+|.||+++..+..|.+ T Consensus 86 ~~~~ivd~~~~~l~g~~~~~~~~d~~-----~~~~l~~~~~-~----n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~- 154 (481) T protein:vir:10 86 YAKYVSRFIVGYLTGNPITITHQDNQ-----TNDKIIELND-L----NDADEVNSDLALNLSIYGRAYEIVYRDFEDRD- 154 (481) T ss_pred hHHHHHHHHHhhhccCCceEecCChh-----HHHHHHHHHH-h----cChhHHHHHHHHHHHhcCeEEEEEEeCCCCeE- Confidence 77888999998888888765432111 1233444443 2 23456778889999999999999988888876 Q ss_pred EEEEecCceeEEEEccce--e----EEEE-eecc--------cccccce-------------------------EEEecC Q lcl|Aclame:pro 127 GLYPLDNEAVTVMKGPDL--K----PMYR-VAGA--------DPLPQRL-------------------------VHHVRW 166 (419) Q Consensus 127 ~l~~~~~~~v~~~~~~~~--~----~~~~-~~~~--------~~~~~~~-------------------------i~~~~~ 166 (419) .+..++|..+.+..+... . +.++ .... ....++. |+++. T Consensus 155 ~i~~~~p~~~~~v~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~- 233 (481) T protein:vir:10 155 TFKVLDPKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYL- 233 (481) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEee- Confidence 466678887776655321 1 1111 0000 0001111 12221 Q ss_pred CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCccee Q lcl|Aclame:pro 167 MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVAL 246 (419) Q Consensus 167 ~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~v 246 (419) +...|.|.+..+...++..........+.+...+.|..++.-.... +.+..+.++..- ....... ..... T Consensus 234 ---n~~~g~~~~~~v~~lida~~~~~s~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~--~~~~~~~-~~~~~ 303 (481) T protein:vir:10 234 ---NDQFKQGDFENVIALIDLYDSAQSDTANYMTDLNDAMLAIIGNVDL----DSEDAKAFRDAN--MIHLEPG-TNANG 303 (481) T ss_pred ---cCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCceeEeecCcCC----Cccchhhhhhcc--ceecccc-ccccC Confidence 1235777777666666655554444455555566666665432111 222233222210 0000000 00111 Q ss_pred cCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc-CcccccHHHHHH----------HHHHHHhhHHHH Q lcl|Aclame:pro 247 LQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE-RATFSNIEHQSL----------QFVIYTLLPWVK 315 (419) Q Consensus 247 l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~-~~~~sn~e~~~~----------~~~~~~i~P~~~ 315 (419) .+++.++.-+........+.+..+...+.|+..-++|....+... ..++..++.... ..+...+.-.++ T Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~ 383 (481) T protein:vir:10 304 SEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTNTPDLNDEQFSGVQSGESMKYKLFGLEQVRAIKERLFKKGLMKRYK 383 (481) T ss_pred CCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 123344444444444566778888999999999999876554322 111111111111 111111111111 Q ss_pred HHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC--CCCcceeeec-ccccc Q lcl|Aclame:pro 316 RHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPP--VKGGDIYLSP-MNMVD 392 (419) Q Consensus 316 ~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p--~~ggD~~~~~-~n~~~ 392 (419) .+...++..-... .....+.+.+......|..+.++.+.++ .|+++.-.+.+++++-. .+..+.+-.- ....+ T Consensus 384 li~~~~~~~~~~~--~~~~~i~v~f~~~~~~~~~~~a~~~~kl--~g~is~et~~~~l~~i~d~~~E~~ri~~E~~~~~~ 459 (481) T protein:vir:10 384 LLLNNVNLTGLKQ--HNYAELTITFTPNLPKSMMESINAFNAL--SGGVSESTRLSLLDFIDNPKEELEKMQEEEAQREK 459 (481) T ss_pred HHHHHHhccCCCc--cccceeeEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHh Confidence 1111111110000 1112334444455677888999988887 47899888888887632 1111111000 00000 Q ss_pred ccccccccCCCCCCccccccch Q lcl|Aclame:pro 393 ASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~e~ 414 (419) ..............++.+++|+ T Consensus 460 ~~~~~~~~~~~~~~~~~dd~~g 481 (481) T protein:vir:10 460 QADKRGYGEAFENHLNVDDSNG 481 (481) T ss_pred hhhhccCCccCCCCCCCCCCCC Confidence 0000000001111111222333 No 184 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=97.63 E-value=3.5e-05 Score=45.04 Aligned_cols=386 Identities=7% Similarity=-0.053 Sum_probs=174.2 Q ss_pred CCc---cchhcccccccccccchHHHHhhcCCCc---ccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFF---SRQLLSNLGQTQPGSGGWVSALLGSARS---EAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f---~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |.. .+..........+. -..+....-+-.. ......-...-+.++....+|+..+..+-+-|+.+...+++.. T Consensus 25 ~~~~~i~~~i~~~~~~~~~~-~~~l~~Yy~g~~~i~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~~~~d~~~ 103 (470) T protein:vir:99 25 LTSNELLGFIAYNETVLKPR-YRENMKLYLGKHKILTAPEKETGADNRIVVNSAKYVVDVYNGYFCGIEPKLALLNDSSK 103 (470) T ss_pred cCHHHHHHHHHHHHHhhHHH-HHHHHHHhccccccccCcccccCCcceeecchHHHHHHHHhhhhccCCeeEeeCCchhH Confidence 110 00000000000000 0001111111000 0000011112234567778888888888888877643221111 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee------EEE Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK------PMY 148 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~------~~~ 148 (419) ...+..++. ..........+..+.+.+|.+|+++..+..|.+ .+..++|..+.+..+.... +.+ T Consensus 104 ----~~~l~~~~~-----~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~~~vr~ 173 (470) T protein:vir:99 104 ----IDEIARWNR-----QENFFDTINEISKQCDIFGRSIASIYQGEDARP-HLMYSSPNHAFIIYDDTVQRQPLAFVHY 173 (470) T ss_pred ----HHHHHHHHH-----hcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeE-EEEEEccceeEEEEcCCCCcceEEEEEE Confidence 123333332 224556777888999999999999988888876 3666788887766654321 111 Q ss_pred Eeecc-c-------ccccceEE------------------Ee-cCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 RVAGA-D-------PLPQRLVH------------------HV-RWMS----INGYTGLSPVLLHANAIGHAQAIQQYAGK 197 (419) Q Consensus 149 ~~~~~-~-------~~~~~~i~------------------~~-~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~ 197 (419) +.... . .+.++.++ |. ..-| .+...|.|.+..+...++....+.....+ T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~ 253 (470) T protein:vir:99 174 QIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLINALDKVISQKAN 253 (470) T ss_pred EEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCCCcchHhHHHHHHHHHHHHHHHHH Confidence 11000 0 00000011 10 0001 12236888888888888887777777777 Q ss_pred HHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec-----CCCceeeecCcChhhHHHHHHHHHH Q lcl|Aclame:pro 198 SFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL-----QEGMKFKPLSMTNVDAALIDALRLS 272 (419) Q Consensus 198 ~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~ 272 (419) .+...+.|..++.--.... ++.-+.++ .+.. .+++.+ +.+.++..+........+.+..+.. T Consensus 254 ~~~~~~~~~~~i~g~~~~~----~~~g~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 320 (470) T protein:vir:99 254 QVEYFDNAYMYMIGFKLPE----DDEGNPKF-DFKN--------NRVLYVSQLDPDTNPQIGFIAKPDADQMQENLIQHL 320 (470) T ss_pred HHHHhcCceeeeecCCccc----ccccchhh-hhhh--------cceeeecCCCCCCCCcceEEeecCChHHHHHHHHHH Confidence 7777777777765422111 11111111 1111 123332 2345566666555555567778889 Q ss_pred HHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhh Q lcl|Aclame:pro 273 ALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLA 341 (419) Q Consensus 273 ~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~ 341 (419) .+.|+..-++|+...+.. ++.++..++ +.....+..++...++.+...+..+--... ....+.+.+. T Consensus 321 ~~~i~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~~--~~~~i~v~f~ 398 (470) T protein:vir:99 321 TDFIFMMAMVPNIQDKNFAGNSSGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQE--LWSELDFKFT 398 (470) T ss_pred HHHHHHHhCCccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc--ccccceEEeC Confidence 999999999987543322 111111111 111122333333333333322222111111 1123444445 Q ss_pred hhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC-CCCcceeeeccccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 342 GLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPP-VKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 342 ~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p-~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) .....+..+.++.+.++. |+++...++++++.-. -...+++..-. ....+...+..........++++|.+ T Consensus 399 ~~~p~~~~e~a~~~~kl~--giis~et~l~~l~~vd~~~E~eri~~E~-~~~~~~~~~~~~~~d~~~~d~~~ee~ 470 (470) T protein:vir:99 399 RNLPEDMASAIDNAKNAE--GIVSKKTQLGMIPDIEPDAEMKQIAKEK-ADAIKQTQQLSMPIDILKRDNNAEEE 470 (470) T ss_pred CCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCHHHHHHHHHHHH-HHHHHHHHhhcCCCCcCCCCCCccCC Confidence 566778889999888874 7899988888876531 11111110000 00000000000000000111111111 No 185 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=97.62 E-value=3.7e-05 Score=44.89 Aligned_cols=339 Identities=11% Similarity=0.049 Sum_probs=154.6 Q ss_pred CC---ccchhcccccccccccchHHHHhhcCCCc--ccccccCHHH---H-hccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MF---FSRQLLSNLGQTQPGSGGWVSALLGSARS--EAGQVVTPAS---A-LSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~-~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |= +.+...... ...+.- ..+.....+-.. ..+..+-++- + +...+...+|+.+++.+.=-.|. . T Consensus 1 ~~~~~i~~L~~~~~-~~~~r~-~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~iVds~a~rl~~~Gf~-----~ 73 (409) T protein:vir:16 1 MTEKGIGYLRFKLS-VHKRRA-EMRYEQYAMKHVDRFKGITIPQALSQQYRSILGWCAKGVDSLADRLVFREFE-----N 73 (409) T ss_pred CCHHHHHHHHHHHH-HHhHHH-HHHHHHHhccCchhhcchhhhHHHHHHHhhhcChhHHHHHHhHhhccccccc-----C Confidence 21 111111110 011100 011111111111 0111111110 0 12345556677666643322221 1 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-----E Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-----P 146 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-----~ 146 (419) + ...+..++. . | +.......+..+.+.+|.||+.+..+..|.+ .+.+++|..+...++.... + T Consensus 74 ~------d~~l~~i~~-~-N---~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~a~ 141 (409) T protein:vir:16 74 D------DFTVNEIFE-E-N---NPDIFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTEGY 141 (409) T ss_pred c------chHHHHHHH-h-c---ChhHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeecccccceeee Confidence 1 123444442 2 2 2334566788899999999999998888875 5777788777766654211 0 Q ss_pred EE--------------Eeeccc---------------ccccceEEEecCC-CCCCcccccH----HHHHHHHHHHHHHHH Q lcl|Aclame:pro 147 MY--------------RVAGAD---------------PLPQRLVHHVRWM-SINGYTGLSP----VLLHANAIGHAQAIQ 192 (419) Q Consensus 147 ~~--------------~~~~~~---------------~~~~~~i~~~~~~-~~~~~~G~s~----~~~~~~~i~~~~~~~ 192 (419) .+ +..+.. .+..=.++++.+. .....+|.|- +..+.+.+.....-. T Consensus 142 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~ 221 (409) T protein:vir:16 142 AVLERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERA 221 (409) T ss_pred EEEEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHH Confidence 00 000000 0000013333333 3345678774 444445555444444 Q ss_pred HHHHHHHHccCCCceEEE-eCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-----CCceeeecCcChhhHHHH Q lcl|Aclame:pro 193 QYAGKSFMNGTALSGVIE-RPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-----EGMKFKPLSMTNVDAALI 266 (419) Q Consensus 193 ~~~~~~~~ng~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~ 266 (419) .....++ +.|.-++. .+.+. +..+.++... ++++.++ ++.++.++....-+ .+. T Consensus 222 ~~~~e~~---a~pqr~i~G~d~d~------~~~~~~~~~~----------~~i~~~~~d~~g~~~~v~q~~~~~l~-~~~ 281 (409) T protein:vir:16 222 DVTAEFY---SFPQKYVTGLSDDA------EPMETWKATV----------SSMLQFTKDEDGDKPTLGQFTQPSMS-PFT 281 (409) T ss_pred HHHHHHh---cChhheeEecCCCC------Cccchhhhhh----------hHhhccCCCCCCCCceEEecCCCChh-HHH Confidence 4444453 44554443 22211 1222332221 2355553 34567666544333 589 Q ss_pred HHHHHHHHHHHHHhcCCHHHcccccCc--ccccHHHHHHHHHHHHhhHHHHHHHHHHHh----hccChhh---hh--hhh Q lcl|Aclame:pro 267 DALRLSALDIARIYKIPAHMVNELERA--TFSNIEHQSLQFVIYTLLPWVKRHEQAKTR----DLLLPSE---RK--QYF 335 (419) Q Consensus 267 e~~~~~~~~Ia~~fgvpp~~~g~~~~~--~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~----~ll~~~~---~~--~~~ 335 (419) +..+....++|..=++|+..+|..... +...+..+...+...+-. ....+.+.+.+ .+..... .. ... T Consensus 282 ~~l~~~~~~~a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka~~-k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~ 360 (409) T protein:vir:16 282 EQLRTAAAGFAGETGLTLDDLGFVSDNPSSVEAIKASHENLRLAGRK-AQRSLGAGLLNVAYLAACLRDDVPYLREQFSK 360 (409) T ss_pred HHHHHHHHHHhhhcCCCHHHcccccCchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccchhhcc Confidence 999999999999999999999865431 111222222222221111 11111111111 1100000 00 011 Q ss_pred hhhhhhhh---hhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 336 IEYNLAGL---LRGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK 379 (419) Q Consensus 336 ~~fd~~~~---~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~ 379 (419) +.+.+... ...+..+.++.+.|++.+| +...+-+++++|+..-+ T Consensus 361 ~~v~W~~~~~~~~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 361 TKPKWEPLFEADASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred ceEEecCCCCcchhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 22222222 2334677888889888886 34457779999998876 No 186 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=97.61 E-value=3.8e-05 Score=44.79 Aligned_cols=397 Identities=10% Similarity=-0.000 Sum_probs=173.5 Q ss_pred CCc--------cchhcc----cccccccccchHHHHhhcCCCc-c-----cccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MFF--------SRQLLS----NLGQTQPGSGGWVSALLGSARS-E-----AGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~f--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |+- .+.+.+ ......+.- .-+...+.+-.. . .....-...-+.++.....++..+..+-+- T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~-~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~ 109 (511) T protein:vir:93 31 YDGTESDLLQNVNEVSKYIEHHMDYQRPRL-KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGN 109 (511) T ss_pred ccchhhhhhccHHHHHHHHHHHHHhhHHHH-HHHHHHhcccCccccccCcCcccccCcceeecchHHHHHHHHhhhhccc Confidence 110 001000 000000000 001111111000 0 000000111133466778888888888888 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP 142 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~ 142 (419) |+++...+++ ....+..++. . -........+..+++.+|.||+++.++..|.+. +..++|..+.+..+. T Consensus 110 p~~~~~~d~~-----~~~~l~~~~~-~----n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~~-i~~~~p~~~~~vydd 178 (511) T protein:vir:93 110 PIQYQDDDKD-----VLEVIEAFND-L----NDVESHNRSLGLDLSIYGKAYELMIRNQDDETR-LYKSDAMSTFVIYDN 178 (511) T ss_pred CeeeccCChH-----HHHHHHHHHh-h----cCHhHHHHHHHHHHHhcCeeEEEEEeCCCCceE-EEEEccceeEEEEcC Confidence 8876322111 1122333332 1 244556677888999999999999988888754 566788887766653 Q ss_pred ce--e----EEEEeec------c------cccccceEEEecC-----------------CC---------CCCcccccHH Q lcl|Aclame:pro 143 DL--K----PMYRVAG------A------DPLPQRLVHHVRW-----------------MS---------INGYTGLSPV 178 (419) Q Consensus 143 ~~--~----~~~~~~~------~------~~~~~~~i~~~~~-----------------~~---------~~~~~G~s~~ 178 (419) .. . +.++... . ..+.++.+++... ++ .+...|.|.+ T Consensus 179 ~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~ 258 (511) T protein:vir:93 179 TIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDY 258 (511) T ss_pred CCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCch Confidence 21 1 1111100 0 0011111111100 00 0123578888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhc-cccccCcceecCCCceeeecC Q lcl|Aclame:pro 179 LLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFG-GSGNAKKVALLQEGMKFKPLS 257 (419) Q Consensus 179 ~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~n~g~~~vl~~g~~~~~l~ 257 (419) ..+...++....+..-..+.+...+.|-.+++-.... +.+...+.++.-.-... ...-.+...-.+++.++..+. T Consensus 259 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (511) T protein:vir:93 259 EKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNL----DPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIY 334 (511) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCccc----CchhhcccccccceecccccccccccccCCCCcceeEEe Confidence 8888888877776666677777777666665532211 11222221111000000 000000111234556666666 Q ss_pred cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhcc Q lcl|Aclame:pro 258 MTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLL 326 (419) Q Consensus 258 ~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll 326 (419) .......+....+...+.|+..-++|....+.. +..++..+. ......+..++...++.|..-+..+.- T Consensus 335 ~~~~~~~~~~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~ 414 (511) T protein:vir:93 335 KQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWS 414 (511) T ss_pred ecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 555556667788889999999999986544322 111111111 111122333333333333222221110 Q ss_pred ChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cccee------eeccccccc-cccc Q lcl|Aclame:pro 327 LPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIY------LSPMNMVDA-SKPQ 397 (419) Q Consensus 327 ~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~------~~~~n~~~~-~~~~ 397 (419) .........+.+.++.-...+..+.++.+.++ .|+++.--+++++++-+-+ ..+++ .+....... .... T Consensus 415 ~~~~~d~~~i~~~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~ 492 (511) T protein:vir:93 415 IDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPR 492 (511) T ss_pred cccccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCC Confidence 00001111234444455667888888888877 5889998888888764321 11100 000000000 0011 Q ss_pred cc-cCCCCCCccccccchh Q lcl|Aclame:pro 398 PI-PMGKTEPTKAALDEIG 415 (419) Q Consensus 398 ~~-~~~~~~~~~~~~~e~~ 415 (419) +. +..+.+.++...+|.+ T Consensus 493 ~~~~~~~~~~~~~~~~~~~ 511 (511) T protein:vir:93 493 DINDDEQDDDTKDTVDKKE 511 (511) T ss_pred CCCCCCCCCcccccccccC Confidence 11 1111111222222222 No 187 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=97.59 E-value=4.1e-05 Score=44.62 Aligned_cols=388 Identities=12% Similarity=0.016 Sum_probs=158.9 Q ss_pred CCc--------------cchhcccccccccccchHHHHhhcCCCcc--cccccCHH--H-HhccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MFF--------------SRQLLSNLGQTQPGSGGWVSALLGSARSE--AGQVVTPA--S-ALSLTVLQNCVTLLAESIAQ 61 (419) Q Consensus 1 M~f--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~-~~~~~~v~~~i~~ia~~ia~ 61 (419) |=+ ...+.+......+. -..+....-+-... .+..+-.+ + -....+...+|+.+++.+-- T Consensus 1 ~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~r-~~~l~~YY~G~~~i~~~~~~~~~~~~~~~~v~n~~~~iVd~~~~~l~~ 79 (486) T protein:vir:42 1 MTAPLPGMEEIEDPAVVREEMISAFEDASKD-LASNTSYYDAERRPEAIGVTVPREMQQLLAHVGYPRLYVDSVAERQAV 79 (486) T ss_pred CCCCCCCCCCcccHHHHHHHHHHHHHHHHHH-HHHHHHHhcccCcchhcccccchhHhhhhhccchHHHHHHHHHhhhcc Confidence 110 01110100000000 00011111111110 01111111 0 11234566777777766544 Q ss_pred CCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce-------EEEEEecCc Q lcl|Aclame:pro 62 LPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI-------QGLYPLDNE 134 (419) Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~-------~~l~~~~~~ 134 (419) ..|.+- ++.. ....+..++. . | ........+..+++.+|.||+++.++..|.. ..+.+++|. T Consensus 80 ~g~~~~---~~~~---~~~~~~~i~~-~-N---~~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~ 148 (486) T protein:vir:42 80 EGFRLG---DADE---ADEELWQWWQ-A-N---NLDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPT 148 (486) T ss_pred cceecC---CCch---hHHHHHHHHH-h-c---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEeccc Confidence 444321 1111 1122334442 2 2 2234566788999999999999977654321 355667777 Q ss_pred eeEEEEccce-e----EEE--------------Eeec---------cc---------ccccceEEEecCC-CCCCccccc Q lcl|Aclame:pro 135 AVTVMKGPDL-K----PMY--------------RVAG---------AD---------PLPQRLVHHVRWM-SINGYTGLS 176 (419) Q Consensus 135 ~v~~~~~~~~-~----~~~--------------~~~~---------~~---------~~~~~~i~~~~~~-~~~~~~G~s 176 (419) .+.+.++... . +.+ |..+ .. .+..=.|+++.++ ...+.+|.| T Consensus 149 ~~~~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s 228 (486) T protein:vir:42 149 RMHAEIDPRINRVSKAIRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTS 228 (486) T ss_pred ceEEEEeCCCCCeEEEEEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcc Confidence 7776665321 0 000 0000 00 0000013333333 234567888 Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceee Q lcl|Aclame:pro 177 PVLL-HANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFK 254 (419) Q Consensus 177 ~~~~-~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~ 254 (419) -+.. +...++....+.........-.+.|..++.--. ......+ -++-...|.. ..++++.++ ++.++. T Consensus 229 ~i~~~v~~liDa~~~~~s~~~~~~e~~a~p~~~i~G~~--~~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~ 299 (486) T protein:vir:42 229 EITPELRSMTDAAARILMLMQATAELMGVPQRLIFGIK--PEEIGVD-SETGQTLFDA------YLARILAFEDAEGKIQ 299 (486) T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhcchHHHhhcCC--ccccccc-cccccchhhh------hhchhcccCCCCceEE Confidence 6653 333343333333333333333444544443110 0000000 0000111211 124566664 567777 Q ss_pred ecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccc--cHH----------HHHHHHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 255 PLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFS--NIE----------HQSLQFVIYTLLPWVKRHEQAKT 322 (419) Q Consensus 255 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~s--n~e----------~~~~~~~~~~i~P~~~~i~~~l~ 322 (419) ++.....+ .+++..+....++|..=++|+..+|.......| .+. +.....+...+.-.++.+....+ T Consensus 300 q~~~~~~e-~~~~~l~~~i~~~s~~~~~p~~~fg~~~~n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~ 378 (486) T protein:vir:42 300 QFSAAELA-NFTNALDQIAKQVAAYTGLPPQYLSTAADNPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMK 378 (486) T ss_pred eecccCHH-HHHHHHHHHHHHHhcccCCCHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 66544333 377888888899999999999988754322111 111 11111222222222221111000 Q ss_pred hhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCCC--Cccee--------eec--- Q lcl|Aclame:pro 323 RDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQW--GWLSINDIRRLENMPPVK--GGDIY--------LSP--- 387 (419) Q Consensus 323 ~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~--g~~T~NE~R~~lGl~p~~--ggD~~--------~~~--- 387 (419) ..- .+.+ ...+.+.+......+..+.++.+.+++.+ |+++..-+++.+|+.+.+ ....+ ... T Consensus 379 ~~~-~~~d--~~~i~v~w~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~ 455 (486) T protein:vir:42 379 GGD-VPPD--MLRMETVWRDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGT 455 (486) T ss_pred CCC-cccc--ceeeeEEecCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHH Confidence 000 0111 12333444445567888899999998876 678888888989886532 11110 000 Q ss_pred cccc----ccccc-ccccCCCCCCccccccch Q lcl|Aclame:pro 388 MNMV----DASKP-QPIPMGKTEPTKAALDEI 414 (419) Q Consensus 388 ~n~~----~~~~~-~~~~~~~~~~~~~~~~e~ 414 (419) .+-. +.... +..+.+++. .++...-+ T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 486 (486) T protein:vir:42 456 MVDADPTVPGSPSPTAPPKPQPA-IESSGGDA 486 (486) T ss_pred hhcCCCCCCCCCCCCCCCCCCcc-cCCCCCCC Confidence 0000 00000 000111111 11111111 No 188 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=97.54 E-value=4.8e-05 Score=44.28 Aligned_cols=372 Identities=11% Similarity=0.039 Sum_probs=166.2 Q ss_pred CC-cc----------chhcccccccccccchHHHHhhcCC-------CcccccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MF-FS----------RQLLSNLGQTQPGSGGWVSALLGSA-------RSEAGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~-f~----------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) || |. .++.+.-....+.- .-+.....+. ...... +..-+..+.....|+..+..+-+- T Consensus 8 ~~~~~~~~~~~~~~i~~~i~~~~~~~~r~-~~~~~Yy~g~~~i~~~~~~~~~~---~~~ki~~n~~~~ivd~~~~~l~g~ 83 (452) T protein:vir:36 8 LMTFSKDEPITVEVVTKFMEKHKLEVARY-EYLKNMYLGIMAIDDEPAKDSWK---PDNRLAVNFTKYIVDTFTGYFNGI 83 (452) T ss_pred eEEcCCccCCCHHHHHHHHHHHHHHHHHH-HHHHHHhccccccccCccccccC---ccceeecchHHHHHHHHhhhhccc Confidence 22 11 01100000000000 0001111110 000010 111133566778888888888788 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP 142 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~ 142 (419) |+.+...+++ ....+..++.. | ........+..+.+.+|.+|+++..+..|.+. +..++|..+.+..+. T Consensus 84 ~~~~~~~d~~-----~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~~-i~~~~p~~~~~v~d~ 152 (452) T protein:vir:36 84 PVKKSHSDKE-----ILTKLQEFDNL--N---DMEDEESELAKMACIYGRAFEFLYQDEDTQTN-VVYNSPENMFMVYDD 152 (452) T ss_pred CceeecCChh-----HHHHHHHHHhh--c---ChhHHHHHHHHHHHhcCeEEEEEEecCCCeeE-EEEEcccceEEEEcC Confidence 8776432111 12233344431 2 33446677888999999999999888888754 556677777666554 Q ss_pred ce--e----EEEEeec-cc----ccccce-------------------------EEEecCCCCCCcccccHHHHHHHHHH Q lcl|Aclame:pro 143 DL--K----PMYRVAG-AD----PLPQRL-------------------------VHHVRWMSINGYTGLSPVLLHANAIG 186 (419) Q Consensus 143 ~~--~----~~~~~~~-~~----~~~~~~-------------------------i~~~~~~~~~~~~G~s~~~~~~~~i~ 186 (419) .. . +.++... .. .+.++. |++++ +...|.|.+......++ T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~----n~~~g~sd~e~v~~liD 228 (452) T protein:vir:36 153 TVKQEPLFAVRYGVDEDKKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFY----FNEERMSIFESVISLVN 228 (452) T ss_pred CCCCceEEEEEEEEecCceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEec----CCCCCCcchHHHHHHHH Confidence 21 0 1111000 00 000000 12221 12357788877777777 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCC-----CceeeecCcChh Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQE-----GMKFKPLSMTNV 261 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~-----g~~~~~l~~~~~ 261 (419) ..........+.+...+.|..++.-. ..+++...+++. ++++.++. +.++..+..... T Consensus 229 a~d~~~s~~~~~~~~~~~p~~~~~g~-----~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (452) T protein:vir:36 229 AFNKAISEKANDVDYFSDQYLTFLGA-----AVEEEDLKNIRS------------NRVINYYADGEGKNVDVKFLEKPDS 291 (452) T ss_pred HHHHHHHHHHHHHHHhcCceeEeecC-----CcCchhhhhhhh------------cceEEecCCCCccCCcceeEeecCC Confidence 77666666666667777776666421 112222222211 12233322 223443444444 Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhh Q lcl|Aclame:pro 262 DAALIDALRLSALDIARIYKIPAHMVNELERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER 331 (419) Q Consensus 262 d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~ 331 (419) ...+....+...+.|+..-++|..-.+..++.++..++ ......+...+...++.+..-+. ..-...+. T Consensus 292 ~~~~~~~~~~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~-~~~~~~~~ 370 (452) T protein:vir:36 292 DSQTENLLDRLTKLIFQTTMVANISDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELST-NVSNKDSW 370 (452) T ss_pred HHHHHHHHHHHHHHHHHHhCccccCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCcccc Confidence 55667778889999999999985333222221111111 11222333333333333322111 11111111 Q ss_pred hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeeecccc-ccc-cccccccCCCCCCc Q lcl|Aclame:pro 332 KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLSPMNM-VDA-SKPQPIPMGKTEPT 407 (419) Q Consensus 332 ~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~~~n~-~~~-~~~~~~~~~~~~~~ 407 (419) .. +.+.+......|..+.++.+.++ .|+++..-+.+++++-.-+ ..++.-.-.-. ... ........+..+.. T Consensus 371 ~~--i~i~f~~~~p~d~~~~a~~~~k~--~g~iS~et~~~~~~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 446 (452) T protein:vir:36 371 KD--IEYTFTRNEPKDIKEQAETANIL--MGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVV 446 (452) T ss_pred cc--ceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCcccccC Confidence 22 33333445667888899988876 5789998888888764321 11111000000 000 00000011111111 Q ss_pred cccccc Q lcl|Aclame:pro 408 KAALDE 413 (419) Q Consensus 408 ~~~~~e 413 (419) ...+.| T Consensus 447 ~~~~~e 452 (452) T protein:vir:36 447 SETNEE 452 (452) T ss_pred ccccCC Confidence 111222 No 189 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=97.54 E-value=4.8e-05 Score=44.25 Aligned_cols=394 Identities=11% Similarity=0.014 Sum_probs=162.3 Q ss_pred CCcc---chhcccccccccccchHHHHhhcCCC-c---cc---ccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFS---RQLLSNLGQTQPGSGGWVSALLGSAR-S---EA---GQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~---~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~ 70 (419) |-+. +...+......+.- ..+...+-+.. . .. .....+..-+..+.....++..+..+-+-|+++...+ T Consensus 22 l~~~~i~~li~~~~~~~~~r~-~~l~~YY~g~~~~i~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~~~d 100 (506) T protein:vir:94 22 LTPNKIMKFITHHFNYQRPRL-EMLDDYYQGYNLKILDKQSRRHEDGKADHRATHSFAKYIADFQTSYSVGNPINVKLPD 100 (506) T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCccccccccccccccCCcceeecchHHHHHHHhhhhhcccCceeecCc Confidence 1111 00000000000000 00111111110 0 00 0000011224466778888888888888887764321 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce--e--- Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--K--- 145 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~--~--- 145 (419) +. ....+..++. . | ........+..+.+.+|.||+++..+..|.+ .+..++|..+-+..+... . T Consensus 101 ~~-----~~~~l~~~~~-~-N---~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~-~i~~~~p~~~~~v~dd~~~~~~~~ 169 (506) T protein:vir:94 101 DG-----SNSGFDTFNK-A-N---DVDAENYDLFLDMSRYGRAYEYVYRGEDNEE-HLAKLDPLDTFVIYSTDVDPKPIM 169 (506) T ss_pred ch-----HHHHHHHHHh-c-c---CHhHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEecCCCCCceEE Confidence 11 1223434442 2 2 3344566788889999999999988888865 355577777766654321 0 Q ss_pred -EEEEe-e---c---------ccccccce-------------------------EEEecCCCCCCcccccHHHHHHHHHH Q lcl|Aclame:pro 146 -PMYRV-A---G---------ADPLPQRL-------------------------VHHVRWMSINGYTGLSPVLLHANAIG 186 (419) Q Consensus 146 -~~~~~-~---~---------~~~~~~~~-------------------------i~~~~~~~~~~~~G~s~~~~~~~~i~ 186 (419) +.++. . + .....+.. |+++++ .-.|.|.+......++ T Consensus 170 ~v~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n----~~~~~sd~e~~~~liD 245 (506) T protein:vir:94 170 AVRYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKN----SNFRLGDFENVLPLID 245 (506) T ss_pred EEEEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecC----CCCCCCchhhhHHHHH Confidence 11100 0 0 00000000 111111 1235666666666655 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeC------------------CCCCchhhHHHHHHHHHHHHHHhccccccCcceecC Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERP------------------TDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ 248 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~ 248 (419) ....+.....+.......|-.+++-. ............+.++..-..........+.+...+ T Consensus 246 a~d~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (506) T protein:vir:94 246 LYDAAQSDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQ 325 (506) T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcCeeeecccccccCcc Confidence 55444433333333222222222110 000000011111111111111111111111122222 Q ss_pred CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcc-cccCcccccHH----------HHHHHHHHHHhhHHHHHH Q lcl|Aclame:pro 249 EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIE----------HQSLQFVIYTLLPWVKRH 317 (419) Q Consensus 249 ~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g-~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i 317 (419) .+.+++-+........+....+.....|...-++|..... ..+..++..+. .....++...+...++.+ T Consensus 326 ~~~d~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li 405 (506) T protein:vir:94 326 TSVDAKYINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQII 405 (506) T ss_pred ccccceeeeecCCHHHHHHHHHHHHHHHHHHhCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 3445555555556667788888999999999999864321 11111111111 122233344444444333 Q ss_pred HHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeee-----cccc Q lcl|Aclame:pro 318 EQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLS-----PMNM 390 (419) Q Consensus 318 ~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~-----~~n~ 390 (419) ..-+.. .-.........+.+.+..-...|..+.++.+.++ .|+++...+++++++-.-| ..+++-. ...+ T Consensus 406 ~~~~~~-~~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v~d~~~E~~ri~~E~~~~~~~~ 482 (506) T protein:vir:94 406 SDIENS-IHGDWTFDPQELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQLPGVTNPQDIVDMMKEQSANGDYSF 482 (506) T ss_pred HHHHHh-cCCccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcc Confidence 322221 1000011112234444556677889999988887 5899999999988663321 1111100 0000 Q ss_pred ccccccccccCCCCCCc-cccccchh Q lcl|Aclame:pro 391 VDASKPQPIPMGKTEPT-KAALDEIG 415 (419) Q Consensus 391 ~~~~~~~~~~~~~~~~~-~~~~~e~~ 415 (419) .. ........+.++. ...+.|.. T Consensus 483 ~~--~~~~~~~~~~~~~~~~~~~e~~ 506 (506) T protein:vir:94 483 DQ--NGVISNDGQTNTTATQTDEEVR 506 (506) T ss_pred hh--hcCCCcccCccccccccccCCC Confidence 00 0111111111111 11122222 No 190 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=97.54 E-value=4.9e-05 Score=44.23 Aligned_cols=382 Identities=10% Similarity=-0.020 Sum_probs=174.4 Q ss_pred CCccchhcccccc------------------cccccc-------hHHHHhhcCCCcccccccC----HHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ------------------TQPGSG-------GWVSALLGSARSEAGQVVT----PASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~~~~~------------------~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~~ 51 (419) |+++.++|.-... .-..+. .|....-|..+........ ............+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~~~i 80 (508) T protein:vir:15 1 MGLIQRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMAKTA 80 (508) T ss_pred CChHHHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchHHHH Confidence 7765443322100 000011 1111222211111111100 0111233455666 Q ss_pred HHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 52 VTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) ++..|+-+..=|..+.....+ . ....+..+|. .| ......+..+.+.+..|.+++.+..+. |. ..+..+ T Consensus 81 ~~~~A~lv~~e~~~i~v~~~~-~---~~e~l~~il~--~n---~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~i~~v 149 (508) T protein:vir:15 81 ARRIASVVFNEKAEIHVKDNN-E---ADKFLNDVLE--DN---DFKNKFEEALEKGVALGGFAMRPYIDG-NH-IKIAWV 149 (508) T ss_pred HHHHHhhhhCCCceEEeCCch-H---HHHHHHHHHH--hc---cHHHHHHHHHHHHhhcCceEEEEEEeC-Ce-eEEEEE Confidence 677777665555444321111 1 1112333442 11 234445566777888899888776554 32 234444 Q ss_pred cCceeEEE-Eccce-------------------eE----------------EEEee--------ccc----------ccc Q lcl|Aclame:pro 132 DNEAVTVM-KGPDL-------------------KP----------------MYRVA--------GAD----------PLP 157 (419) Q Consensus 132 ~~~~v~~~-~~~~~-------------------~~----------------~~~~~--------~~~----------~~~ 157 (419) +++.+-+. .+... ++ .+... |.. .+. T Consensus 150 ~ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~ 229 (508) T protein:vir:15 150 RADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELA 229 (508) T ss_pred cCCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCC Confidence 55544331 11110 00 00000 000 001 Q ss_pred cce---------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEE---eCCCCCchhh Q lcl|Aclame:pro 158 QRL---------VHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIE---RPTDAPALKD 220 (419) Q Consensus 158 ~~~---------i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~---~~~~~~~~~~ 220 (419) ++. ..+++.+.. +...|+|.+.-+...++..+.......+.|+ .+.+..++. ++.+..+ T Consensus 230 ~~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~-~~~~~i~v~~~~l~~d~~~--- 305 (508) T protein:vir:15 230 PQVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIR-LGQKHIAVQPGMLRFDDEH--- 305 (508) T ss_pred cceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHH-hcccceeechHHhcCCCCC--- Confidence 110 122222211 2356999999999999988887777777775 555555541 1111110 Q ss_pred HHHHHHHHHHHHHHhccccccCccee--cCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccH Q lcl|Aclame:pro 221 QASVDRITDGWNAKFGGSGNAKKVAL--LQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNI 298 (419) Q Consensus 221 ~~~~~~~~~~~~~~~~g~~n~g~~~v--l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~ 298 (419) ... | ....+....+- .++|..++.++....+-++.+..+...+.|....|++|..+|..+++..+ . T Consensus 306 ~~~-------~----~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~T-A 373 (508) T protein:vir:15 306 KPT-------F----DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKT-A 373 (508) T ss_pred ccc-------c----CCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCcccc-H Confidence 000 0 11111111111 12345577777776777789999999999999999999999876654432 2 Q ss_pred HHH-------------HHHHHHHHhhHHHHHHHHHHHhh-ccCh---h-----hhhhhhhhhhhhhhhhccHHHHHHHHH Q lcl|Aclame:pro 299 EHQ-------------SLQFVIYTLLPWVKRHEQAKTRD-LLLP---S-----ERKQYFIEYNLAGLLRGDQSSRYAAYA 356 (419) Q Consensus 299 e~~-------------~~~~~~~~i~P~~~~i~~~l~~~-ll~~---~-----~~~~~~~~fd~~~~~~~d~~~~~~~~~ 356 (419) .+. ....++.+|..++..|..-.... ++.. . ....+.+.++++.-...|.++..+... T Consensus 374 tei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~ 453 (508) T protein:vir:15 374 TEVVSNNSMTYQTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDA 453 (508) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHH Confidence 222 11223333333333322111100 0000 0 011234556666667788999999999 Q ss_pred HHHhCCCcCHHHHHHHh-CCCCCCCcceeeeccccccccccccc-cCCCCCCccccccc Q lcl|Aclame:pro 357 VGRQWGWLSINDIRRLE-NMPPVKGGDIYLSPMNMVDASKPQPI-PMGKTEPTKAALDE 413 (419) Q Consensus 357 ~~~~~g~~T~NE~R~~l-Gl~p~~ggD~~~~~~n~~~~~~~~~~-~~~~~~~~~~~~~e 413 (419) +++.+|+++.-+++... |++.- ..++-+... ..+.+... ..+..++..+.++| T Consensus 454 ~~v~aGi~s~e~~i~~~~g~~de-ea~~el~ri---~~E~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 454 KVLAIGALSKQTFLQRNYGMTDE-QAAEELAKI---QSEAPTDTFEGGRSAILNGGDGE 508 (508) T ss_pred HHHhcCCCCHHHHHHhcCCCChH-HHHHHHHHH---HHhccccCccccccccCCCCCCC Confidence 99999999999987653 55431 111111110 00111111 11122223333333 No 191 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=97.53 E-value=4.9e-05 Score=44.20 Aligned_cols=369 Identities=10% Similarity=-0.003 Sum_probs=165.0 Q ss_pred CCcc---chhcccccccccccchHHHHhhcCCC---------cccc--cccCHHHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MFFS---RQLLSNLGQTQPGSGGWVSALLGSAR---------SEAG--QVVTPASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) --.. .++.+......+. -..+.....+-. ...+ ...-+..-+.++.....++..+..+-+-|+.+ T Consensus 26 ~~~~~~i~~~i~~~~~~~~~-~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~ 104 (474) T protein:vir:95 26 ETQEEMIIRLINNHKQKLKD-INVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTY 104 (474) T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHHHhcccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCcee Confidence 0000 0000000000000 000011111000 0000 00000111234566778888888888888886 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce-- Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL-- 144 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~-- 144 (419) ...++. ....+...+. | ........+..+++.+|.||.++.++..|.+ .+..++|..+-+..+... T Consensus 105 ~~~~~~-----~~~~l~~~~~---n---~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~ 172 (474) T protein:vir:95 105 AHDDDK-----VLDVIHQVLD---T---RWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKERE 172 (474) T ss_pred ccCChH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCC Confidence 432111 1122333332 2 3445566678899999999999988888875 455677777776654321 Q ss_pred e----EEEEeeccc----ccccce-----------------------------------EEEecCCCCCCcccccHHHHH Q lcl|Aclame:pro 145 K----PMYRVAGAD----PLPQRL-----------------------------------VHHVRWMSINGYTGLSPVLLH 181 (419) Q Consensus 145 ~----~~~~~~~~~----~~~~~~-----------------------------------i~~~~~~~~~~~~G~s~~~~~ 181 (419) . +.++..... ...++. +++++ +...|.|.+... T Consensus 173 ~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~----nn~~~~~d~e~v 248 (474) T protein:vir:95 173 QLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFK----NNPEEVSDIWMY 248 (474) T ss_pred ceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEec----CCCCCCCchHHH Confidence 0 111100000 000111 11111 223577888877 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChh Q lcl|Aclame:pro 182 ANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNV 261 (419) Q Consensus 182 ~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~ 261 (419) ...++....+.....+.+...+.|-.+++- . ..+ ....+...+ ...+++.++++.++..+..... T Consensus 249 ~~liDa~d~~~S~~~~~~~~~~~p~lv~~g--~-~~~----~~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~ 313 (474) T protein:vir:95 249 KSFVDAIDKRLSDVQNMFDESVELIYILRG--Y-EGE----DLSEFMEGL--------KYYKAINVSSDGGVETIQVEVP 313 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhcC--C-Ccc----cccchhhhh--------hccceeeccCCCceeEEeccCC Confidence 777777766666666666666666555432 1 111 111112211 1234666676666666665555 Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHH--------------HHHHHHHhhHHHHHHHHHHHhhccC Q lcl|Aclame:pro 262 DAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQS--------------LQFVIYTLLPWVKRHEQAKTRDLLL 327 (419) Q Consensus 262 d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~--------------~~~~~~~i~P~~~~i~~~l~~~ll~ 327 (419) +..+....+...+.|+..-++|........ ++ .+..+. ...+...+...++.+.. ++. T Consensus 314 ~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n--~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~-----~~g 385 (474) T protein:vir:95 314 VASTKEYLDMMRAYIVEFGQGVDFQTDKFG-SA--TSGIALKFLYTNLNLKANKLKNKANVALQELMQFILD-----FNK 385 (474) T ss_pred HHHHHHHHHHHHHHHHHHhCCcCccccccc-cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhC Confidence 666778888899999999999854332111 11 111121 12222222232222221 111 Q ss_pred hhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----ecccccccccccccc Q lcl|Aclame:pro 328 PSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPIP 400 (419) Q Consensus 328 ~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~~ 400 (419) .. .....+.+.++.-...+..+.++. +.++|+++.-.+++++++-.-+ ..+++- ....+......... T Consensus 386 ~~-~d~~~i~i~f~~~~p~~~~e~a~~---~~~~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~- 460 (474) T protein:vir:95 386 IK-LDAKEIEITFNFNVMVNDLEQSQI---GAQSQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGAD- 460 (474) T ss_pred CC-cccceeeEEecCCCccCHHHHHHH---HHHcCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCC- Confidence 10 111123333334445566666655 4457999999999988764321 111110 00011111111111 Q ss_pred CCCCCCccccccchh Q lcl|Aclame:pro 401 MGKTEPTKAALDEIG 415 (419) Q Consensus 401 ~~~~~~~~~~~~e~~ 415 (419) ..+++.+..++|.+ T Consensus 461 -~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 461 -GAQQQQQSENNQSK 474 (474) T ss_pred -CCCCcCCCCccccC Confidence 11112222222222 No 192 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=97.53 E-value=4.9e-05 Score=44.20 Aligned_cols=369 Identities=10% Similarity=-0.003 Sum_probs=165.0 Q ss_pred CCcc---chhcccccccccccchHHHHhhcCCC---------cccc--cccCHHHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MFFS---RQLLSNLGQTQPGSGGWVSALLGSAR---------SEAG--QVVTPASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~f~---~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) --.. .++.+......+. -..+.....+-. ...+ ...-+..-+.++.....++..+..+-+-|+.+ T Consensus 26 ~~~~~~i~~~i~~~~~~~~~-~~~l~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~ 104 (474) T protein:vir:96 26 ETQEEMIIRLINNHKQKLKD-INVGQKYYDKDNDINYQAYKQDLHGNIDYTKPDWRITTNFHQNLVDQKVSYVAGKPVTY 104 (474) T ss_pred cchHHHHHHHHHHHHHHHHH-HHHHHHHhcccCccccccchhhhcccccccccccccccchHHHHHHhhhhhhcccCcee Confidence 0000 0000000000000 000011111000 0000 00000111234566778888888888888886 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce-- Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL-- 144 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~-- 144 (419) ...++. ....+...+. | ........+..+++.+|.||.++.++..|.+ .+..++|..+-+..+... T Consensus 105 ~~~~~~-----~~~~l~~~~~---n---~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~ 172 (474) T protein:vir:96 105 AHDDDK-----VLDVIHQVLD---T---RWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKERE 172 (474) T ss_pred ccCChH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCC Confidence 432111 1122333332 2 3445566678899999999999988888875 455677777776654321 Q ss_pred e----EEEEeeccc----ccccce-----------------------------------EEEecCCCCCCcccccHHHHH Q lcl|Aclame:pro 145 K----PMYRVAGAD----PLPQRL-----------------------------------VHHVRWMSINGYTGLSPVLLH 181 (419) Q Consensus 145 ~----~~~~~~~~~----~~~~~~-----------------------------------i~~~~~~~~~~~~G~s~~~~~ 181 (419) . +.++..... ...++. +++++ +...|.|.+... T Consensus 173 ~~~a~ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~----nn~~~~~d~e~v 248 (474) T protein:vir:96 173 QLNAFIRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFK----NNPEEVSDIWMY 248 (474) T ss_pred ceEEEEEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEec----CCCCCCCchHHH Confidence 0 111100000 000111 11111 223577888877 Q ss_pred HHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChh Q lcl|Aclame:pro 182 ANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNV 261 (419) Q Consensus 182 ~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~ 261 (419) ...++....+.....+.+...+.|-.+++- . ..+ ....+...+ ...+++.++++.++..+..... T Consensus 249 ~~liDa~d~~~S~~~~~~~~~~~p~lv~~g--~-~~~----~~~~~~~~~--------~~~~~i~~~~~~~~~~l~~~~~ 313 (474) T protein:vir:96 249 KSFVDAIDKRLSDVQNMFDESVELIYILRG--Y-EGE----DLSEFMEGL--------KYYKAINVSSDGGVETIQVEVP 313 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhcC--C-Ccc----cccchhhhh--------hccceeeccCCCceeEEeccCC Confidence 777777766666666666666666555432 1 111 111112211 1234666676666666665555 Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHH--------------HHHHHHHhhHHHHHHHHHHHhhccC Q lcl|Aclame:pro 262 DAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQS--------------LQFVIYTLLPWVKRHEQAKTRDLLL 327 (419) Q Consensus 262 d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~--------------~~~~~~~i~P~~~~i~~~l~~~ll~ 327 (419) +..+....+...+.|+..-++|........ ++ .+..+. ...+...+...++.+.. ++. T Consensus 314 ~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~-~n--~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~-----~~g 385 (474) T protein:vir:96 314 VASTKEYLDMMRAYIVEFGQGVDFQTDKFG-SA--TSGIALKFLYTNLNLKANKLKNKANVALQELMQFILD-----FNK 385 (474) T ss_pred HHHHHHHHHHHHHHHHHHhCCcCccccccc-cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhC Confidence 666778888899999999999854332111 11 111121 12222222232222221 111 Q ss_pred hhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----ecccccccccccccc Q lcl|Aclame:pro 328 PSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPIP 400 (419) Q Consensus 328 ~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~~ 400 (419) .. .....+.+.++.-...+..+.++. +.++|+++.-.+++++++-.-+ ..+++- ....+......... T Consensus 386 ~~-~d~~~i~i~f~~~~p~~~~e~a~~---~~~~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~- 460 (474) T protein:vir:96 386 IK-LDAKEIEITFNFNVMVNDLEQSQI---GAQSQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGAD- 460 (474) T ss_pred CC-cccceeeEEecCCCccCHHHHHHH---HHHcCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCC- Confidence 10 111123333334445566666655 4457999999999988764321 111110 00011111111111 Q ss_pred CCCCCCccccccchh Q lcl|Aclame:pro 401 MGKTEPTKAALDEIG 415 (419) Q Consensus 401 ~~~~~~~~~~~~e~~ 415 (419) ..+++.+..++|.+ T Consensus 461 -~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 461 -GAQQQQQSENNQSK 474 (474) T ss_pred -CCCCcCCCCccccC Confidence 11112222222222 No 193 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=97.53 E-value=5e-05 Score=44.15 Aligned_cols=386 Identities=9% Similarity=0.013 Sum_probs=171.8 Q ss_pred CC-ccc----------hhcccccccccccchHHHHhhcC-------CCcccccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MF-FSR----------QLLSNLGQTQPGSGGWVSALLGS-------ARSEAGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~-f~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |+ |-+ ++.+.-....+.- .-+.....+ ....... ...-+.++.....|+..+..+-+- T Consensus 8 ~~~~~~~~~~~~~~i~~~i~~~~~~~~r~-~~~~~yy~g~~~i~~~~~~~~~~---~~~ki~~n~~~~ivd~~~~~l~g~ 83 (453) T protein:vir:73 8 LMTYSRDEEITDKVVNDFMKKHQEEVERY-EYLGNMYKGIMEISSQKAKDSWK---PDNRLTNNFAKYIVDTFVGYFNGI 83 (453) T ss_pred eeeccccccCCHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhcCCCCCccC---ccceeecchHHHHHHHhhhhhccc Confidence 11 110 0000000000000 000111110 0000000 111133556777888888877777 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP 142 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~ 142 (419) |+.+...++ ...+.+...+. . | ........+..+.+.+|.||+++..+..|.+. +..++|..+.+..+. T Consensus 84 ~~~~~~~d~-----~~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-i~~~~p~~~~~v~dd 152 (453) T protein:vir:73 84 PIKKTHDDK-----SVLEAMQLFDN-L-N---DMEDEESELAKIACVYGRAYELMYQNESTESE-VIYCSPLNVFMVYDD 152 (453) T ss_pred CceeecCCh-----HHHHHHHHHHH-h-c---ChhHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEEeC Confidence 777532111 11122333332 1 2 33445667888999999999999888888763 555677777666544 Q ss_pred cee------EEEEeec--cc---ccccceEEEec------------CCC---------CCCcccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 DLK------PMYRVAG--AD---PLPQRLVHHVR------------WMS---------INGYTGLSPVLLHANAIGHAQA 190 (419) Q Consensus 143 ~~~------~~~~~~~--~~---~~~~~~i~~~~------------~~~---------~~~~~G~s~~~~~~~~i~~~~~ 190 (419) ... ..++... .. .+.++.+++.. .++ .+...|.|.+......++.... T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa~~~ 232 (453) T protein:vir:73 153 SIKQKPLFAVYYGFDEEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINSYNK 232 (453) T ss_pred CCCceeEEEEEEEEecCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHHHHH Confidence 210 1111000 00 00111111110 011 0123578888888888877666 Q ss_pred HHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHH Q lcl|Aclame:pro 191 IQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALR 270 (419) Q Consensus 191 ~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 270 (419) +.....+.....+.|..+++--. ..++....++..-. ........+.....+.+.++.-+.....+..+....+ T Consensus 233 ~~S~~~~~~~~~~~~~l~~~g~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~ 306 (453) T protein:vir:73 233 VTSEKANDVEYFSDQYLVFLGAE-----VDEEDAKNIKDNRL-INFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLN 306 (453) T ss_pred HHHHHHHHHHHhccceeeeecCC-----CCchhhhccccccc-ccccccccccccccccCceeEEeeecCCHHHHHHHHH Confidence 66666666666777776664221 12233333322100 0011112222333345556655555545566677788 Q ss_pred HHHHHHHHHhcCCHHHcccccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhh Q lcl|Aclame:pro 271 LSALDIARIYKIPAHMVNELERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNL 340 (419) Q Consensus 271 ~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~ 340 (419) ...+.|+..-++|..-....++.++..++ +.....+...+...++.+.. +....-...+.. .+.+.+ T Consensus 307 ~l~~~I~~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~-~~~~~~~~~~~~--~i~v~f 383 (453) T protein:vir:73 307 RLERSIFQFTMAANISDENFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSS-LSTNASNKDAWK--DIEYTF 383 (453) T ss_pred HHHHHHHHHhCCcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCccccc--cceEEe Confidence 88999999989875322211111111111 11112223333333332221 111111111112 233334 Q ss_pred hhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCCCCCccccccchhcc Q lcl|Aclame:pro 341 AGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRI 417 (419) Q Consensus 341 ~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 417 (419) ..-...|..+.++.+.+++ |+++..-+.+++++-+-+..+ + . -...+............-.+++.+-|.| T Consensus 384 ~~~~p~~~~~~a~~~~k~~--giis~et~~~~~~~~~d~~~E-~-~---ri~~E~~~~~~~~~~~~~~~~~~~~~~~ 453 (453) T protein:vir:73 384 TRNEPKDIKEQAETANILK--GITSEETALSVISVIPDVQAE-M-E---KIKKKKLLQLSLTRTSNLVRMKQMRGNL 453 (453) T ss_pred CCCCCCCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHH-H-H---HHHHHHHHHHHHHHhccCCcchhhhcCC Confidence 4556778999999998885 788987788877663321100 0 0 0000110111111112223333444444 No 194 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=97.51 E-value=5.3e-05 Score=44.02 Aligned_cols=386 Identities=9% Similarity=-0.035 Sum_probs=166.8 Q ss_pred CC-ccch--------------hcccccccccccchHHHHhhcCCCcc--cc-c-ccCHHHHh----ccHHHHHHHHHHHH Q lcl|Aclame:pro 1 MF-FSRQ--------------LLSNLGQTQPGSGGWVSALLGSARSE--AG-Q-VVTPASAL----SLTVLQNCVTLLAE 57 (419) Q Consensus 1 M~-f~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~-~~~~~~~~----~~~~v~~~i~~ia~ 57 (419) |. |-+- +.+......+. -..+....-+-..- .. . .-.....+ .+.....+|+.+++ T Consensus 1 ~~~~p~~~l~~~~~~~~~~~~l~~~~~~~~~r-~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~iVd~~~~ 79 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLETKVFPKMNTECER-LDDFEAWTKNGQEVPDLATRHKNKEREVLQQLSRKPWMGLMVNSFAQ 79 (479) T ss_pred CccCCcccCChhHHHHHHHHHHHHHHHHHhHH-HHHHHHHHhcCCcccccccccCChhHHHHHHHhhcCcHHHHHHHHHh Confidence 22 1100 00000000000 00111111111100 00 0 00111111 23456677787777 Q ss_pred hhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEee-----cCCCceEEEEEec Q lcl|Aclame:pro 58 SIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR-----DQDGVIQGLYPLD 132 (419) Q Consensus 58 ~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~-----~~~G~~~~l~~~~ 132 (419) .+--..|.+ . ++. ..+.+..++. . | ...+....+..+++.+|.||+++.. +..|.+ .+..++ T Consensus 80 ~l~~~gf~~---~-d~~---~~~~~~~i~~-~-N---~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~-~i~~~~ 146 (479) T protein:vir:99 80 QLIVDGYRK---T-GTN---ENAKGWDTWR-L-N---QMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA-RIKCID 146 (479) T ss_pred hcccccccC---C-Cch---hhHHHHHHHH-h-c---ChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCce-EEEEec Confidence 553333322 1 111 1233445553 2 2 2234566788899999999998864 233433 355667 Q ss_pred CceeEEEEcccee---------------EEEEe--------ec--ccc--------cccceEEEecCCCCCCcccccHHH Q lcl|Aclame:pro 133 NEAVTVMKGPDLK---------------PMYRV--------AG--ADP--------LPQRLVHHVRWMSINGYTGLSPVL 179 (419) Q Consensus 133 ~~~v~~~~~~~~~---------------~~~~~--------~~--~~~--------~~~~~i~~~~~~~~~~~~G~s~~~ 179 (419) |..+.+.++.... ..++. .+ ... +..=.|+++.+++....+|.|.+. T Consensus 147 p~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~g~sd~e 226 (479) T protein:vir:99 147 PRDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDLRGVCYGDVE 226 (479) T ss_pred hhheEEEecCCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCcCcCCcchhH Confidence 7777665533210 00010 00 000 000124555555443457899888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCccee-cCCCceeeecCc Q lcl|Aclame:pro 180 LHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVAL-LQEGMKFKPLSM 258 (419) Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~v-l~~g~~~~~l~~ 258 (419) .+...++..............-.+.|..++.--..... ....... +.- ..++++. -+++.++.++.. T Consensus 227 ~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~G~~~~~~--~~~~~~~----~~~------~~~~i~~~~~~~~~~~q~~~ 294 (479) T protein:vir:99 227 PLVTVAKAIDKTGLDILLVQHHQSFQIRWATGLMLPEG--ANADQEK----MRF------AQESMLISQNEKASFGAIPA 294 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCCCcccc--cccchhc----ccc------ccccceeecCCCceEEEecc Confidence 88888877766666666666666777666542111000 0000111 110 1123433 356677776653 Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc----------cCh Q lcl|Aclame:pro 259 TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL----------LLP 328 (419) Q Consensus 259 ~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l----------l~~ 328 (419) .. -..+.+.++....+|+..=++|+..+|...++++ ....+....+.-.+...+..|...| ... T Consensus 295 ~~-~~~~~~~l~~~i~~i~~~t~~p~~~~g~~~n~Sg-----~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~~~~ 368 (479) T protein:vir:99 295 AP-LDGLLNAYKESLLEFLALAQLPPHIAGQIVNVAA-----DALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKIEGR 368 (479) T ss_pred cc-hHHHHHHHHHHHHHHhccCCCCHHHcccccchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC Confidence 33 2336777888889999999999999875432221 1122222333322333222222111 110 Q ss_pred hh-hhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh-CCCCC--CCc----------ceeeecccccccc Q lcl|Aclame:pro 329 SE-RKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLE-NMPPV--KGG----------DIYLSPMNMVDAS 394 (419) Q Consensus 329 ~~-~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~l-Gl~p~--~gg----------D~~~~~~n~~~~~ 394 (419) .. .....+.+.+......+..+.++.+.+++.+|+++.-.+.+++ |+++- +-. +.+.....-.+ + T Consensus 369 ~~~~~~~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~ 447 (479) T protein:vir:99 369 TEEATDLDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQSTVNGWKEIYDREGDFGKYMRKLQNGP-D 447 (479) T ss_pred CccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc-C Confidence 00 0111233333334456888899999999999999998888877 77652 100 00000000000 0 Q ss_pred ccccccCCCC-CCccccccchhcccC Q lcl|Aclame:pro 395 KPQPIPMGKT-EPTKAALDEIGRILS 419 (419) Q Consensus 395 ~~~~~~~~~~-~~~~~~~~e~~~~~~ 419 (419) ...+.....+ .+..++.+..+.--+ T Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (479) T protein:vir:99 448 PAEQRGGPNGATNMQQANNKTGEPAS 473 (479) T ss_pred cccccCCCCCCCCCCCCCCCCcchhc Confidence 0000000000 000011111111111 No 195 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=97.48 E-value=5.9e-05 Score=43.79 Aligned_cols=382 Identities=10% Similarity=-0.032 Sum_probs=173.7 Q ss_pred CCccchhcccccc-----------------cccccch-------HHHHhhcCC-Cccc---c-cccCHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ-----------------TQPGSGG-------WVSALLGSA-RSEA---G-QVVTPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~~~~~-----------------~~~~~~~-------~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~v~~~ 51 (419) |+++.++|.-... .-..+.. |. .++.+- .... . ...........+....+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~-~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i 79 (500) T protein:vir:30 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNL-KYYKSDWDSVLYLNTDGETKKRDLNHLPIARTA 79 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHH-HHhcCCCCCcccccCCCCcccCceeecchHHHH Confidence 7766443322110 0011111 11 122211 1110 0 00111222334555666 Q ss_pred HHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 52 VTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) ++..|+-+..-|..+.-. + ......+..+|. . -.....+...+.+....|.+++.+..+. |.+ .+..+ T Consensus 80 ~~~~A~lv~~e~~~i~~~--d---~~~~~~l~~il~--~---n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~-~I~~v 147 (500) T protein:vir:30 80 AKKIASLVFNEQAEIKVD--D---DAANEFISETLK--N---DRFNKNFERYLESCLALGGLAMRPYVDG-DKV-RVAFV 147 (500) T ss_pred HHHHhhhhcCCcceEecC--C---hHHHHHHHHHHh--h---ccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cce-EEEEE Confidence 677777666555443221 1 111122333332 1 2334456667777888898888776554 332 34445 Q ss_pred cCceeEEE-Eccc-------------------eeE---EEE-------------ee--------cccc--------cccc Q lcl|Aclame:pro 132 DNEAVTVM-KGPD-------------------LKP---MYR-------------VA--------GADP--------LPQR 159 (419) Q Consensus 132 ~~~~v~~~-~~~~-------------------~~~---~~~-------------~~--------~~~~--------~~~~ 159 (419) +++.+-+. .+.. .++ .++ .. |... +.++ T Consensus 148 ~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~ 227 (500) T protein:vir:30 148 QAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDE 227 (500) T ss_pred cCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcc Confidence 55554432 1110 000 000 00 0000 0011 Q ss_pred ---------eEEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEE-----EeCCC-CCchh Q lcl|Aclame:pro 160 ---------LVHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI-----ERPTD-APALK 219 (419) Q Consensus 160 ---------~i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~-----~~~~~-~~~~~ 219 (419) ...+++.+.. +...|+|.+..+...++..........+.++.| ....++ ..... .+++. T Consensus 228 ~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g-~~~i~v~~~~l~~~~~~~~g~~ 306 (500) T protein:vir:30 228 AKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMG-QRRVAVPESLTALTVRTTDGDV 306 (500) T ss_pred eEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhC-cceeeechHHhcccCCCCCccc Confidence 1223332211 235699999999999998888777777777654 344333 11110 11100 Q ss_pred hHHHHHHHHHHHHHHhccccccCccee--cCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccccc Q lcl|Aclame:pro 220 DQASVDRITDGWNAKFGGSGNAKKVAL--LQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSN 297 (419) Q Consensus 220 ~~~~~~~~~~~~~~~~~g~~n~g~~~v--l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn 297 (419) ... ..| ...++....+- .+++..++.++....+-++.+..+...++||...|+++..+|..+++..+. T Consensus 307 ~~~------~~~----d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TA 376 (500) T protein:vir:30 307 VPR------PRF----ESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTA 376 (500) T ss_pred cCC------ccc----CCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccH Confidence 000 000 00000000000 123345777776666778899999999999999999999998766544322 Q ss_pred HHH------------HHHHHHHHHhhHHHHHHHHHHHh--hccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 298 IEH------------QSLQFVIYTLLPWVKRHEQAKTR--DLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGW 363 (419) Q Consensus 298 ~e~------------~~~~~~~~~i~P~~~~i~~~l~~--~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~ 363 (419) .|- .....++.+|..++..|.. +.+ .++.......+.+.++++.-...|.++.++...+++.+|+ T Consensus 377 tei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~-~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi 455 (500) T protein:vir:30 377 TEIVSENSDTYQMRNSIVALVEQSLKELVISIFE-IAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGF 455 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCC Confidence 221 1222333344443333322 111 1111111122345566666667788899999999999999 Q ss_pred cCHHHHHHHh-CCCCCCCcceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 364 LSINDIRRLE-NMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 364 ~T~NE~R~~l-Gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) |+.-+++.++ |++.- ...+.+ ..+......+.++..+..+.-.| T Consensus 456 ~s~~~~i~~~~g~~ee-ea~~~l-----~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:30 456 GTREMAIQKVLNVTEE-KAQEIA-----AEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred CCHHHHHHhcCCCCHH-HHHHHH-----HHHHHhccccCCCCCccccccCC Confidence 9999988654 55432 111111 11111111111112222222222 No 196 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=97.48 E-value=5.9e-05 Score=43.79 Aligned_cols=382 Identities=10% Similarity=-0.032 Sum_probs=173.7 Q ss_pred CCccchhcccccc-----------------cccccch-------HHHHhhcCC-Cccc---c-cccCHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ-----------------TQPGSGG-------WVSALLGSA-RSEA---G-QVVTPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~~~~~-----------------~~~~~~~-------~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~v~~~ 51 (419) |+++.++|.-... .-..+.. |. .++.+- .... . ...........+....+ T Consensus 1 m~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~-~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i 79 (500) T protein:vir:98 1 MGVIQKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNL-KYYKSDWDSVLYLNTDGETKKRDLNHLPIARTA 79 (500) T ss_pred CchHHHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHH-HHhcCCCCCcccccCCCCcccCceeecchHHHH Confidence 7766443322110 0011111 11 122211 1110 0 00111222334555666 Q ss_pred HHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 52 VTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) ++..|+-+..-|..+.-. + ......+..+|. . -.....+...+.+....|.+++.+..+. |.+ .+..+ T Consensus 80 ~~~~A~lv~~e~~~i~~~--d---~~~~~~l~~il~--~---n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~~-~I~~v 147 (500) T protein:vir:98 80 AKKIASLVFNEQAEIKVD--D---DAANEFISETLK--N---DRFNKNFERYLESCLALGGLAMRPYVDG-DKV-RVAFV 147 (500) T ss_pred HHHHhhhhcCCcceEecC--C---hHHHHHHHHHHh--h---ccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cce-EEEEE Confidence 677777666555443221 1 111122333332 1 2334456667777888898888776554 332 34445 Q ss_pred cCceeEEE-Eccc-------------------eeE---EEE-------------ee--------cccc--------cccc Q lcl|Aclame:pro 132 DNEAVTVM-KGPD-------------------LKP---MYR-------------VA--------GADP--------LPQR 159 (419) Q Consensus 132 ~~~~v~~~-~~~~-------------------~~~---~~~-------------~~--------~~~~--------~~~~ 159 (419) +++.+-+. .+.. .++ .++ .. |... +.++ T Consensus 148 ~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~ 227 (500) T protein:vir:98 148 QAPVFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDE 227 (500) T ss_pred cCCeeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcc Confidence 55554432 1110 000 000 00 0000 0011 Q ss_pred ---------eEEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEE-----EeCCC-CCchh Q lcl|Aclame:pro 160 ---------LVHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI-----ERPTD-APALK 219 (419) Q Consensus 160 ---------~i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~-----~~~~~-~~~~~ 219 (419) ...+++.+.. +...|+|.+..+...++..........+.++.| ....++ ..... .+++. T Consensus 228 ~~~~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g-~~~i~v~~~~l~~~~~~~~g~~ 306 (500) T protein:vir:98 228 AKVTDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMG-QRRVAVPESLTALTVRTTDGDV 306 (500) T ss_pred eEeccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhC-cceeeechHHhcccCCCCCccc Confidence 1223332211 235699999999999998888777777777654 344333 11110 11100 Q ss_pred hHHHHHHHHHHHHHHhccccccCccee--cCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccccc Q lcl|Aclame:pro 220 DQASVDRITDGWNAKFGGSGNAKKVAL--LQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSN 297 (419) Q Consensus 220 ~~~~~~~~~~~~~~~~~g~~n~g~~~v--l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn 297 (419) ... ..| ...++....+- .+++..++.++....+-++.+..+...++||...|+++..+|..+++..+. T Consensus 307 ~~~------~~~----d~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TA 376 (500) T protein:vir:98 307 VPR------PRF----ESDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTA 376 (500) T ss_pred cCC------ccc----CCCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccH Confidence 000 000 00000000000 123345777776666778899999999999999999999998766544322 Q ss_pred HHH------------HHHHHHHHHhhHHHHHHHHHHHh--hccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCC Q lcl|Aclame:pro 298 IEH------------QSLQFVIYTLLPWVKRHEQAKTR--DLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGW 363 (419) Q Consensus 298 ~e~------------~~~~~~~~~i~P~~~~i~~~l~~--~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~ 363 (419) .|- .....++.+|..++..|.. +.+ .++.......+.+.++++.-...|.++.++...+++.+|+ T Consensus 377 tei~s~~~~~~~t~~~~~~~~~~al~~lv~~il~-~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi 455 (500) T protein:vir:98 377 TEIVSENSDTYQMRNSIVALVEQSLKELVISIFE-IAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGF 455 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCC Confidence 221 1222333344443333322 111 1111111122345566666667788899999999999999 Q ss_pred cCHHHHHHHh-CCCCCCCcceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 364 LSINDIRRLE-NMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 364 ~T~NE~R~~l-Gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) |+.-+++.++ |++.- ...+.+ ..+......+.++..+..+.-.| T Consensus 456 ~s~~~~i~~~~g~~ee-ea~~~l-----~~i~~E~~~~~~~~~~~~~~~g~ 500 (500) T protein:vir:98 456 GTREMAIQKVLNVTEE-KAQEIA-----AEINTGIVDEINQQRTDTHLYGE 500 (500) T ss_pred CCHHHHHHhcCCCCHH-HHHHHH-----HHHHHhccccCCCCCccccccCC Confidence 9999988654 55432 111111 11111111111112222222222 No 197 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=97.48 E-value=5.9e-05 Score=43.75 Aligned_cols=377 Identities=8% Similarity=-0.012 Sum_probs=171.5 Q ss_pred CC--------ccchhcc---cccccccccchHHHHhhcCCCc------c---cc--cccCHHHHhccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MF--------FSRQLLS---NLGQTQPGSGGWVSALLGSARS------E---AG--QVVTPASALSLTVLQNCVTLLAES 58 (419) Q Consensus 1 M~--------f~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~---~~--~~~~~~~~~~~~~v~~~i~~ia~~ 58 (419) |+ ..+.+.+ ......+.- .-+.....+-.. . .+ ....+..-+.++....+|+..+.. T Consensus 35 ~~~~~~~~~~~~~~i~~~i~~~~~~~~r~-~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~y 113 (492) T protein:vir:97 35 IVRTNNKPETLEEMIVRYIKQHLEKLPEI-SIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSY 113 (492) T ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCccccccccccccccccccccccccccchHHHHHHHHhhh Confidence 21 1111111 000000000 001111111100 0 00 000011113356778889999888 Q ss_pred hccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEE Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTV 138 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~ 138 (419) +-+-|+++...+++ ....+..++. | ...+....+..+++.+|.||+++..+..|.+. +..++|..+.+ T Consensus 114 l~g~p~~~~~~d~~-----~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~~-~~~~~p~~~~~ 181 (492) T protein:vir:97 114 IVGKPIAFKHTDDE-----VVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIP 181 (492) T ss_pred hcccCceeccCchH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhcCeEEEEEEecCCCceE-EEEEcccceEE Confidence 88888776322111 1122323332 2 22345556788899999999999888888753 66678887777 Q ss_pred EEccc--ee----EEEEeecc----cccccce----------------------EEEecCCCC---------CCcccccH Q lcl|Aclame:pro 139 MKGPD--LK----PMYRVAGA----DPLPQRL----------------------VHHVRWMSI---------NGYTGLSP 177 (419) Q Consensus 139 ~~~~~--~~----~~~~~~~~----~~~~~~~----------------------i~~~~~~~~---------~~~~G~s~ 177 (419) .++.. +. +.++.... ....+.. ..+...+++ +...|.|. T Consensus 182 i~d~~~~~~~~~~vr~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd 261 (492) T protein:vir:97 182 IWTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISD 261 (492) T ss_pred EEcCCCCCceEEEEEEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCCc Confidence 66532 10 11110000 0000000 011111111 12357888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecC Q lcl|Aclame:pro 178 VLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLS 257 (419) Q Consensus 178 ~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~ 257 (419) +......++....+.....+.+.....|-.+++--. . +....+...+. ..+++.++++.++..+. T Consensus 262 ~e~v~~liDa~d~~~S~~~~~~~~~~~~~l~~~g~~---~----~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~ 326 (492) T protein:vir:97 262 IFMYKTLIDAYNRRLSDLSNTFKDSNELTYVLKNYD---D----QELPEFKRLLR--------YYGAIKVSDNGGVDTIQ 326 (492) T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhccceeeeecCC---c----ccchhHHHHHh--------hccceecCCCCcceeEe Confidence 888888887777666666777777777766654321 1 11122222221 12355566666666555 Q ss_pred cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhcc Q lcl|Aclame:pro 258 MTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLL 326 (419) Q Consensus 258 ~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll 326 (419) ....+..+....+...+.|+..-++|....... +..++..++ ......+...+...++.+... + T Consensus 327 ~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~-----~ 401 (492) T protein:vir:97 327 VEVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEH-----F 401 (492) T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----h Confidence 555566678888888999999999886433211 111111111 111112222222222222221 1 Q ss_pred ChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----eccccccccccccc Q lcl|Aclame:pro 327 LPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPI 399 (419) Q Consensus 327 ~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~ 399 (419) .... ....+.+.++.....+..+.++.+.++ +|+++..-+.+++++-+-+ ..+++- ...+.......+.. T Consensus 402 ~~~~-~~~~i~v~f~~~~p~~~~e~a~~~~kl--~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~~ 478 (492) T protein:vir:97 402 DIKG-EHKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGAD 478 (492) T ss_pred cCCc-ccceeeEEecCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCCC Confidence 1111 112233334455667888889988887 5889998888888764321 111110 01111111111111 Q ss_pred cCCCCCCccccccc Q lcl|Aclame:pro 400 PMGKTEPTKAALDE 413 (419) Q Consensus 400 ~~~~~~~~~~~~~e 413 (419) ...+.+..+...+| T Consensus 479 ~~~~~~~~~~~~~e 492 (492) T protein:vir:97 479 SAQQQERSNNKESE 492 (492) T ss_pred CCcccccccccccC Confidence 11111111121222 No 198 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=97.43 E-value=6.9e-05 Score=43.41 Aligned_cols=397 Identities=10% Similarity=0.006 Sum_probs=172.4 Q ss_pred CCc-----------cchh-cccccccccccchHHHHhhcCC-Cccc-----ccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MFF-----------SRQL-LSNLGQTQPGSGGWVSALLGSA-RSEA-----GQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~f-----------~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |.- .+.+ .+......+.- .-+.....+- .... ....-...-+..+.....++..+..+-+- T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~-~~l~~YY~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~ 109 (512) T protein:vir:97 31 YDGTESDLLQNINEVSKYIEHHMDYQRPRL-KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGN 109 (512) T ss_pred cCchhhhhhhhHHHHHHHHHHHHHhhHHHH-HHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHhhhhccc Confidence 210 0011 00000001100 0011111110 0000 00000111123456677888888888888 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP 142 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~ 142 (419) |+.+...+++ ....+..++. . -........+..+.+.+|.||+++.++..|.+. +..++|..+.+.++. T Consensus 110 p~~~~~~d~~-----~~~~l~~~~~-~----n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~~-i~~~~p~~~~~iyd~ 178 (512) T protein:vir:97 110 PIQCQDDDKD-----VLEAIEAFND-L----NDVESHNRSLGLDLSIYGKAYELMIRNQDDETR-LYKSDAMSTFVIYDN 178 (512) T ss_pred CceeccCChH-----HHHHHHHHHh-h----cCHHHHHHHHHHHHHhcCeEEEEEEeCCCCceE-EEEEcccceEEEEcC Confidence 8886422111 1123333332 1 234456677888999999999999998888654 566788777766654 Q ss_pred ce------eEEEEee-c-----------ccccccceEEEec-----------------CCCC---------CCcccccHH Q lcl|Aclame:pro 143 DL------KPMYRVA-G-----------ADPLPQRLVHHVR-----------------WMSI---------NGYTGLSPV 178 (419) Q Consensus 143 ~~------~~~~~~~-~-----------~~~~~~~~i~~~~-----------------~~~~---------~~~~G~s~~ 178 (419) .. .+.++.. . ...+.++.+++.. .+++ +...|.|.+ T Consensus 179 ~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~ 258 (512) T protein:vir:97 179 TIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDY 258 (512) T ss_pred CCCCceEEEEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCch Confidence 31 0111100 0 0011111111111 0010 123578888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccc--cccCcceecCCCceeeec Q lcl|Aclame:pro 179 LLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGS--GNAKKVALLQEGMKFKPL 256 (419) Q Consensus 179 ~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~n~g~~~vl~~g~~~~~l 256 (419) ..+...++....+..-..+.+...+.|-.+++-.... +.+.....+....-..... .+.+...-.++|.++..+ T Consensus 259 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l 334 (512) T protein:vir:97 259 EKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNL----DPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYI 334 (512) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCceeeeecCccC----CchhhhhhhhcccccccccchhhcccccCCCCCcceEEE Confidence 8888888887777766777777777776666532211 1122222221110000000 011111223456666666 Q ss_pred CcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhc Q lcl|Aclame:pro 257 SMTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDL 325 (419) Q Consensus 257 ~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~l 325 (419) ........+....+...+.|+..-++|....+.. +..++..+. ......+...+.-.++.|..-+...- T Consensus 335 ~~~~~~~~~e~~~~~L~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~ 414 (512) T protein:vir:97 335 YKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTR 414 (512) T ss_pred eecCCHHHHHHHHHHHHHHHHHHhCCcccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC Confidence 6555555667788888999999999987544322 111111111 11111222222222222221111110 Q ss_pred cChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cccee------eecccccc-cccc Q lcl|Aclame:pro 326 LLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIY------LSPMNMVD-ASKP 396 (419) Q Consensus 326 l~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~------~~~~n~~~-~~~~ 396 (419) -.........+.+.+..-...+..+.++.+.++ .|+++..-+++++++-+.+ ..+++ .+...... .... T Consensus 415 ~~~~~~d~~~i~~~f~~~~p~~~~e~~~~~~kl--~giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~ 492 (512) T protein:vir:97 415 SIDANKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDP 492 (512) T ss_pred CcccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCC Confidence 000000111233333444567788888888877 4889998888888763321 11100 00000000 0011 Q ss_pred ccc-cCCCCCCccccccchh Q lcl|Aclame:pro 397 QPI-PMGKTEPTKAALDEIG 415 (419) Q Consensus 397 ~~~-~~~~~~~~~~~~~e~~ 415 (419) ... ...+.+.++...+|.+ T Consensus 493 ~~~~~~~~~~~~~~~~~~~~ 512 (512) T protein:vir:97 493 RDINDDEQDDDTKDTVDKKE 512 (512) T ss_pred CCCCCCCCCCCccccccccC Confidence 111 1111111222222222 No 199 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=97.43 E-value=7e-05 Score=43.38 Aligned_cols=378 Identities=8% Similarity=-0.026 Sum_probs=172.4 Q ss_pred CC--------ccchhcccccccccccc--hHHHHhhcCCCc------c--c---ccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MF--------FSRQLLSNLGQTQPGSG--GWVSALLGSARS------E--A---GQVVTPASALSLTVLQNCVTLLAESI 59 (419) Q Consensus 1 M~--------f~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~--~---~~~~~~~~~~~~~~v~~~i~~ia~~i 59 (419) +| ..+.+.+-......... .-+.....+-.. . . .....+..-+.++....+|+..++.+ T Consensus 26 ~~~~~~~~e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l 105 (483) T protein:vir:12 26 IVRTNNKPETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYI 105 (483) T ss_pred ccccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccchHHHHHHHHhhhh Confidence 11 11111000000000000 001111111100 0 0 00000111134667788899998888 Q ss_pred ccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEE Q lcl|Aclame:pro 60 AQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVM 139 (419) Q Consensus 60 a~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~ 139 (419) -+-|+++...+++ ....+..++. | ........+..+.+.+|.+|+++..+..|.+. +..++|..+.+. T Consensus 106 ~G~p~~~~~~d~~-----~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~~-i~~~~p~~~~~v 173 (483) T protein:vir:12 106 VGKPIAFKHTDDE-----VVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEFK-LFRVPAEQGIPI 173 (483) T ss_pred cccCceeccCChH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEEEEcCCCceE-EEEEcccceEEE Confidence 8888776322111 1112322332 2 22344556778899999999999888888754 666788887776 Q ss_pred Eccce--e----EEEEeecc----cccccceE----------------------EEecCCCC---------CCcccccHH Q lcl|Aclame:pro 140 KGPDL--K----PMYRVAGA----DPLPQRLV----------------------HHVRWMSI---------NGYTGLSPV 178 (419) Q Consensus 140 ~~~~~--~----~~~~~~~~----~~~~~~~i----------------------~~~~~~~~---------~~~~G~s~~ 178 (419) .+... . +.++.... ....+..+ ++...+++ +...|.|.+ T Consensus 174 ~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~ 253 (483) T protein:vir:12 174 WTDKEHEELEAFIRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDI 253 (483) T ss_pred EcCCCCCceEEEEEEEEeecceEEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCch Confidence 54321 0 11110000 00000000 11111111 123577888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCc Q lcl|Aclame:pro 179 LLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSM 258 (419) Q Consensus 179 ~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~ 258 (419) ......++....+.....+.+...+.|..+++--. .+ ....+...+. .++++.++++.++..+.. T Consensus 254 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~---~~----~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~ 318 (483) T protein:vir:12 254 FMYKTLIDAYNRRLSDLSNTFKDSNELTYVLTNYD---DQ----ELPEFKRLLR--------YYGAIKVSDNGGVDTIQV 318 (483) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCC---cc----cchhHHHhhh--------hccccccCCCCcceEEee Confidence 88888887777666666666777777766654321 11 1111222111 123555566656655555 Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCCHHHccc-ccCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccC Q lcl|Aclame:pro 259 TNVDAALIDALRLSALDIARIYKIPAHMVNE-LERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLL 327 (419) Q Consensus 259 ~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~-~~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~ 327 (419) ...+..+....+...+.|+..-++|....+. .++.++..++ ......+...+...++.+...+.. T Consensus 319 ~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~---- 394 (483) T protein:vir:12 319 EVPVENSKKYLDELYQKIMLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI---- 394 (483) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---- Confidence 5556667788888889999999998643322 1111111111 111222233333333333221111 Q ss_pred hhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----ecccccccccccccc Q lcl|Aclame:pro 328 PSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPMNMVDASKPQPIP 400 (419) Q Consensus 328 ~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~n~~~~~~~~~~~ 400 (419) +.+ ...+.+.+......|..+.++.+.++ +|+++..-+++++++-+-+ ..++.- ............... T Consensus 395 ~~~--~~~i~v~f~~~~p~~~~~~a~~~~kl--~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d~ 470 (483) T protein:vir:12 395 KGE--HKDVDISFNYNKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGADG 470 (483) T ss_pred CCc--cceeeEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhcccccccccCC Confidence 111 12233334455677889999988887 5899999888888763321 111100 001111111112111 Q ss_pred CCCCCCccccccc Q lcl|Aclame:pro 401 MGKTEPTKAALDE 413 (419) Q Consensus 401 ~~~~~~~~~~~~e 413 (419) ..+.+..+..+.| T Consensus 471 ~~~~~~~~~~e~e 483 (483) T protein:vir:12 471 AQQQERSNNKESE 483 (483) T ss_pred cccCCCCCcccCC Confidence 1122222222222 No 200 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=97.41 E-value=7.3e-05 Score=43.28 Aligned_cols=343 Identities=11% Similarity=0.065 Sum_probs=154.6 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcc--cccccCHHH----HhccHHHHHHHHHHHHhhccCCeeEeeecCCcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSE--AGQVVTPAS----ALSLTVLQNCVTLLAESIAQLPVELYERSGDDR 74 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~ 74 (419) |-.. ..+. .......-+-... .+..+-++- -+...+...+|+.+|+.+.=-.|. . T Consensus 1 l~~~-------~~r~----~~~~~yY~g~~~~~~~~~~~p~~~~~~~~~v~nw~~~~Vds~a~rl~~~Gf~-----~--- 61 (410) T protein:vir:95 1 MNLY-------QSRV----NLRYKHYAMQHYEAPTGITIPAHIRAKYQAVLGWAAKGVDSLADRLIFRAFA-----N--- 61 (410) T ss_pred CCcc-------hhhH----HHHHHHhcCCCCccccchhccHHHHhHHHhhcchhHHHHHHhHhhhcccccc-----C--- Confidence 1111 0000 0011111111111 111111110 012345556666666643322221 1 Q ss_pred eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcccee-----EE-- Q lcl|Aclame:pro 75 KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLK-----PM-- 147 (419) Q Consensus 75 ~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~-----~~-- 147 (419) ....+..++. .. +.......+..+.+.+|+||+.+..+..|.+ .+.+++|..+...++.... +. T Consensus 62 ---~d~~l~~i~~-~N----~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP~~~~~i~Dp~~~~~~~al~~~ 132 (410) T protein:vir:95 62 ---DDFNVTEIFD-RN----NPDIFFDSAILSALIGSCSFVYISKGEDDEV-RLQVIESSNATGVIDPITGLLVEGYAVL 132 (410) T ss_pred ---CCchHHHHHh-hc----ChHHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEEeCCCCceEEEEEEE Confidence 1123444442 22 3334566788899999999999988888875 5778888888777654311 00 Q ss_pred ------------EEeecc----------cccc--cc--eEEEecCCC-CCCcccccH----HHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 ------------YRVAGA----------DPLP--QR--LVHHVRWMS-INGYTGLSP----VLLHANAIGHAQAIQQYAG 196 (419) Q Consensus 148 ------------~~~~~~----------~~~~--~~--~i~~~~~~~-~~~~~G~s~----~~~~~~~i~~~~~~~~~~~ 196 (419) ++..+. ...+ -. .++++.+.+ .+..+|.|- +..+.+.+.....-..... T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~ 212 (410) T protein:vir:95 133 ARDDYNRPTLEAYFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITA 212 (410) T ss_pred EecCCCeEEEEEEEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHH Confidence 000000 0000 01 133333332 344577774 4444444444444444444 Q ss_pred HHHHccCCCceEEE-eCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCC-----CceeeecCcChhhHHHHHHHH Q lcl|Aclame:pro 197 KSFMNGTALSGVIE-RPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQE-----GMKFKPLSMTNVDAALIDALR 270 (419) Q Consensus 197 ~~~~ng~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~ 270 (419) .++ +.|.-++. .+. +....+.++.. .++++.++. +.++.++....-+ .+.+..+ T Consensus 213 e~~---a~pqr~i~G~d~------d~~~~~~~~~~----------~~~i~~~~~~~~~~~~~v~q~~~~~l~-~~~~~l~ 272 (410) T protein:vir:95 213 EFY---SWPQKYILGLDP------DAEPMEKWKAT----------VSSLLTISSSDKGVKPSVGQFTTASMS-PFTEQLR 272 (410) T ss_pred HHh---cchhheeeccCC------CCCcCchhhhh----------hhhheeccCCCCCCcceEEecCCCChH-HHHHHHH Confidence 443 44544443 221 11222233222 234566653 3567666543332 4889999 Q ss_pred HHHHHHHHHhcCCHHHcccccCccccc---HHHHHHHHHHHHhhHHHHHHHHHHHh----hcc--C-----hhhhhhhhh Q lcl|Aclame:pro 271 LSALDIARIYKIPAHMVNELERATFSN---IEHQSLQFVIYTLLPWVKRHEQAKTR----DLL--L-----PSERKQYFI 336 (419) Q Consensus 271 ~~~~~Ia~~fgvpp~~~g~~~~~~~sn---~e~~~~~~~~~~i~P~~~~i~~~l~~----~ll--~-----~~~~~~~~~ 336 (419) .....||..=++|+..+|.... |-+. +..+...+...+ .-....+.+.+.+ .+. . +.+.....+ T Consensus 273 ~l~~~~a~~s~lP~~~lg~~~~-NpsSa~Al~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v 350 (410) T protein:vir:95 273 TAAAGFAGEMGLTLDDLGFVSD-NPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAV 350 (410) T ss_pred HHHHHHhhhcCCCHHHhccccC-chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeE Confidence 9999999999999999986543 2111 122221111111 1111111122211 110 0 011111122 Q ss_pred hhhh-hhhhhccHHHHHHHHHHHHhC--CCcCHHHHHHHhCCCCCCCcceeeeccccccccccccccCCC Q lcl|Aclame:pro 337 EYNL-AGLLRGDQSSRYAAYAVGRQW--GWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPIPMGK 403 (419) Q Consensus 337 ~fd~-~~~~~~d~~~~~~~~~~~~~~--g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~ 403 (419) .+.. ......+..+.++.+.+++++ |+....-+++.||+.+-+-.. .+ .. .....++ T Consensus 351 ~W~p~~d~~~~s~a~~aDa~~Kl~~a~~g~~~~~~~~~~lg~~~~~~~~----~~--~~----e~~~~g~ 410 (410) T protein:vir:95 351 KWEPLFEADANTMTMIGDGVVKLNQALPGYINAETIRDLTGIAGDMSAK----PV--VS----EGGSNGE 410 (410) T ss_pred EeeecCCcchhhHHHHHHHHHHHHHhccCCccHHHHHHhcCCChHHHHH----HH--HH----HHHhCCC Confidence 2210 022334567788888888887 687788899999997542100 00 00 0000111 No 201 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=97.35 E-value=8.9e-05 Score=42.80 Aligned_cols=384 Identities=10% Similarity=-0.057 Sum_probs=172.2 Q ss_pred CCccchhccc---ccccccc-----cchH-----------HH-----HhhcCCCcccccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSN---LGQTQPG-----SGGW-----------VS-----ALLGSARSEAGQVVTPASALSLTVLQNCVTLLA 56 (419) Q Consensus 1 M~f~~~~~~~---~~~~~~~-----~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia 56 (419) |+.+-..++. .-...|. --.. .. ..|.+.... +.+. ..-+..+....+++.+| T Consensus 1 ~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~-~~~~~~~l~~~i~~~~A 77 (518) T protein:vir:78 1 MGVWSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYV--PTVH-DKLMNSGTGNEIVVVAA 77 (518) T ss_pred CcchhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCC--Cccc-cccccCChHHHHHHHHH Confidence 7755322211 1111111 0000 00 011111111 0011 11234445667788888 Q ss_pred HhhccCCeeEeeecCCc-ceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCce Q lcl|Aclame:pro 57 ESIAQLPVELYERSGDD-RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEA 135 (419) Q Consensus 57 ~~ia~~~~~~~~~~~~~-~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~ 135 (419) +-+..=+..+.-...+. ..+.....+..+|.. -.....+...+.+....|.+++.+..+ .|.+ .+..++++. T Consensus 78 ~ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~~-----n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~~-~i~~v~ad~ 150 (518) T protein:vir:78 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI-----DNFDSKSVKIVELAGGSGVSAVKINIL-NGRP-SISVHSSSQ 150 (518) T ss_pred HhhcCCCceEEecCccccCcHHHHHHHHHHHHh-----ccHHHHHHHHHHHhhccCceEEEEEEE-CCee-EEEEEcCCe Confidence 87776555543222211 111112233344421 123344455566677788887766544 2443 344455555 Q ss_pred eEEEEccc----------------e-eE-----------------------EEEee--c-ccc----------------- Q lcl|Aclame:pro 136 VTVMKGPD----------------L-KP-----------------------MYRVA--G-ADP----------------- 155 (419) Q Consensus 136 v~~~~~~~----------------~-~~-----------------------~~~~~--~-~~~----------------- 155 (419) +-+..... . ++ .+... . ... T Consensus 151 ~~P~~~~g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~ 230 (518) T protein:vir:78 151 FWIDFKNNEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLH 230 (518) T ss_pred eEEEeecCcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCcccccccccccccccccccc Confidence 44322110 0 00 00000 0 000 Q ss_pred ---cc----------cceEEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEE-----eC Q lcl|Aclame:pro 156 ---LP----------QRLVHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIE-----RP 212 (419) Q Consensus 156 ---~~----------~~~i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~-----~~ 212 (419) .. .-.+.|+++... +...|+|.+.-+...+...+.........|+. +.+..++. .. T Consensus 231 ~~~~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~-g~~~i~v~~~~l~~~ 309 (518) T protein:vir:78 231 TNDIQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEK-TKTKIAASERMFRKK 309 (518) T ss_pred cccCccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHh-CCceeeechhHhccC Confidence 00 001233333211 23469999999999999988888888888875 55555542 11 Q ss_pred CCCCchhhHHHHHHHHHHHHHHhccccccCcce--ecCCCc----eeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHH Q lcl|Aclame:pro 213 TDAPALKDQASVDRITDGWNAKFGGSGNAKKVA--LLQEGM----KFKPLSMTNVDAALIDALRLSALDIARIYKIPAHM 286 (419) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~--vl~~g~----~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~ 286 (419) ....+... .- .| ....+....+ -.++|. .++.++....+.++.+..+...++|....|++|.. T Consensus 310 ~~~~~~~~---~~----~f----d~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~t 378 (518) T protein:vir:78 310 VNKSTDKE---EW----SM----NVDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPAT 378 (518) T ss_pred CCCCCCcc---cc----cc----CCCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhh Confidence 11100000 00 00 0000100000 012222 26667777778889999999999999999999998 Q ss_pred cccccCcccccHHH------------HHHHHHHHHhhHHHHHHHHHHHhhccChh----hhhhhhhhhhhhhhhhccHHH Q lcl|Aclame:pro 287 VNELERATFSNIEH------------QSLQFVIYTLLPWVKRHEQAKTRDLLLPS----ERKQYFIEYNLAGLLRGDQSS 350 (419) Q Consensus 287 ~g~~~~~~~sn~e~------------~~~~~~~~~i~P~~~~i~~~l~~~ll~~~----~~~~~~~~fd~~~~~~~d~~~ 350 (419) +|...+ ..++.|- .....++.+|.-++..+.. +...+.... ....+.+.++++.-...|.++ T Consensus 379 fg~~~~-~~TATei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~-l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~ 456 (518) T protein:vir:78 379 FNLGNR-EVKATEIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLY-LLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNE 456 (518) T ss_pred cCcccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCccccccCCCceeEEEEeCCCCCCCHHH Confidence 876432 2222221 1122333333333333322 111111110 112234666777778889999 Q ss_pred HHHHHHHHHhCCCcCHHHHHHHh--CCCCCCCcceeeecccc--ccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 351 RYAAYAVGRQWGWLSINDIRRLE--NMPPVKGGDIYLSPMNM--VDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 351 ~~~~~~~~~~~g~~T~NE~R~~l--Gl~p~~ggD~~~~~~n~--~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) .++...+++.+|+|++-++-+++ |++. +..++-+....- .....+.+.+. ..-..++| T Consensus 457 ~~~~~~~~v~aGimS~e~~i~~~~~~~~d-eea~~e~~ri~~E~~~~~~~~p~~~------~g~~~~~g 518 (518) T protein:vir:78 457 LSSTLNNMNSALAMSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAI------GGMETKGG 518 (518) T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCCCCCH-HHHHHHHHHHHHHhcccCCCCCccc------cCCCCCCC Confidence 99999999999999999866655 3221 112211110000 00011111111 11222333 No 202 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=97.33 E-value=9.4e-05 Score=42.67 Aligned_cols=393 Identities=9% Similarity=-0.032 Sum_probs=180.2 Q ss_pred CCccchhccc----ccccccccchHHHHhhcCCC-ccccc----ccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFSRQLLSN----LGQTQPGSGGWVSALLGSAR-SEAGQ----VVTPASALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) +...+.++.- .....+.-........|... ..... ......-+.++....+++..+..+-+-|+++..... T Consensus 38 ~~~~~~l~~~i~~~~~~~~~r~~~l~~yY~g~~~~i~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~~~d~ 117 (501) T protein:vir:27 38 VNNWELLKNFINHHKLRQAPRIQELLDYARGENHDVLQFGRRKDREMADKRAVHNYGRMISKFKTGYLAGNPIRVEYDDN 117 (501) T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccCccCccccccceeccchHHHHHHHHhhhhcccCeeEecCCc Confidence 2222222111 10101100011111111110 00000 000112234677888999999999888887754332 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce------e Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL------K 145 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~------~ 145 (419) +... .....+..++. . -........+..+++.+|.||+++.++..|.+. +..++|..+.+..+... . T Consensus 118 ~~~~-~~~~~l~~~~~-~----n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~~-i~~~~p~~~~~v~d~~~~~~~~~~ 190 (501) T protein:vir:27 118 DNNS-QNDDTIKRIGR-I----NDIDSHNRTLIRDLSQTGRAYEVIYRNEYDETR-IKRLNPLETFVIYDNSLEDNSIAA 190 (501) T ss_pred cchH-HHHHHHHHHHH-h----cChhHHHHHHHHHHhhCCeEEEEEEeCCCCceE-EEEEccceeEEEecCCCCCceEEE Confidence 2111 11112222222 1 244567778899999999999999988888653 55677777776665421 1 Q ss_pred EEEEeec----c----cccccce------------------------EEEecCCCCCCcccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 146 PMYRVAG----A----DPLPQRL------------------------VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQ 193 (419) Q Consensus 146 ~~~~~~~----~----~~~~~~~------------------------i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~ 193 (419) +.++... . ....++. |++++ +...|.|.+..+...++....+.. T Consensus 191 ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~----nn~~g~sd~e~v~~liDa~d~~~S 266 (501) T protein:vir:27 191 VRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFL----NNVDGIGDYETELYLIDLYDSAES 266 (501) T ss_pred EEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEec----CCCCCCCchhhhHHHHHHHHHHHH Confidence 1111100 0 0000010 22222 123688888888888888777777 Q ss_pred HHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHH Q lcl|Aclame:pro 194 YAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSA 273 (419) Q Consensus 194 ~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~ 273 (419) ...+.+.....|-.++.-... .. ..+....++.. ........+.......+.++..+.....+..+....+... T Consensus 267 ~~~~~~~~~~~~~~v~~g~~~--~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~ 340 (501) T protein:vir:27 267 DTANHMSDMADAILAIYGDLA--LP-KGMQASDMKRT---RLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLN 340 (501) T ss_pred HHHHHHHHhcCceeeeecCcc--CC-cccchhhhhhc---CceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHH Confidence 777777766666666543211 11 12222222211 0000111111222344556666665555566777788889 Q ss_pred HHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhh Q lcl|Aclame:pro 274 LDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAG 342 (419) Q Consensus 274 ~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~ 342 (419) +.|+..-++|....+.. ++.++..++ ......+...+...++.+...++..--. .......+.+.+.. T Consensus 341 ~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~-~~~d~~~i~v~f~~ 419 (501) T protein:vir:27 341 RDIHIFTNIPDMSDTNFSGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEF-KDFDESLLKITFTP 419 (501) T ss_pred HHHHHHhCCcccCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cccccccceEEeCC Confidence 99999999986544322 211111111 1111223333333333332222211100 01111224444455 Q ss_pred hhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--CCc----------ceeeeccccc-cccccccccCCCCCCccc Q lcl|Aclame:pro 343 LLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV--KGG----------DIYLSPMNMV-DASKPQPIPMGKTEPTKA 409 (419) Q Consensus 343 ~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~--~gg----------D~~~~~~n~~-~~~~~~~~~~~~~~~~~~ 409 (419) ....+..+.++.+.++ .|+++..-+.+++++-.- ... +.-.....+. +.+...+.+....++.+ T Consensus 420 ~~p~n~~e~ad~~~kl--~g~iS~et~l~~l~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~~~~d~~- 496 (501) T protein:vir:27 420 NLPKSLNEQVSILTGL--GGQVSQETALSLSGLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKETHTDDF- 496 (501) T ss_pred CCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCCCccccc- Confidence 6677888889888877 578999888888766321 111 1111111111 11111212211112222 Q ss_pred cccchh Q lcl|Aclame:pro 410 ALDEIG 415 (419) Q Consensus 410 ~~~e~~ 415 (419) +++.+ T Consensus 497 -e~~~~ 501 (501) T protein:vir:27 497 -ERAYE 501 (501) T ss_pred -cccCC Confidence 22222 No 203 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=97.28 E-value=0.00011 Score=42.34 Aligned_cols=397 Identities=10% Similarity=0.007 Sum_probs=168.2 Q ss_pred CCccchhccc----ccccccccchHHHHhh-cCCCcc-----cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFSRQLLSN----LGQTQPGSGGWVSALL-GSARSE-----AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~ 70 (419) |...+.+.+- .....+.- .-+.... |..... .....-...-+.++.....++..+..+-+-|+.+...+ T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~-~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d 117 (511) T protein:vir:78 39 LQNVNEVSKYIEHHMDYQRPRL-KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD 117 (511) T ss_pred hcCHHHHHHHHHHHHHhhhHHH-HHHHHHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeecCc Confidence 1111111110 00000000 0011111 111000 00000011113346677788888888888887763211 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce--e--- Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--K--- 145 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~--~--- 145 (419) ++ ....+..++. . | ....+...+..+++.+|.||+++.++..|.+ .+..++|..+.+..+... . T Consensus 118 ~~-----~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~ 186 (511) T protein:vir:78 118 KD-----VLEAIEAFND-L-N---DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIA 186 (511) T ss_pred hH-----HHHHHHHHHh-h-c---ChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEE Confidence 11 1123333332 2 2 3345666788899999999999998888865 355667777766655321 1 Q ss_pred -EEEEee-c-----c------cccccceEEEecC-----------------C-----CC----CCcccccHHHHHHHHHH Q lcl|Aclame:pro 146 -PMYRVA-G-----A------DPLPQRLVHHVRW-----------------M-----SI----NGYTGLSPVLLHANAIG 186 (419) Q Consensus 146 -~~~~~~-~-----~------~~~~~~~i~~~~~-----------------~-----~~----~~~~G~s~~~~~~~~i~ 186 (419) +.++.. . . ..+.++.+++... + |. +...|.|.+..+...++ T Consensus 187 ~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liD 266 (511) T protein:vir:78 187 GVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLID 266 (511) T ss_pred EEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHH Confidence 111110 0 0 0011111111100 0 00 12257788888777777 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhcccc-ccCcceecCCCceeeecCcChhhHHH Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSG-NAKKVALLQEGMKFKPLSMTNVDAAL 265 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-n~g~~~vl~~g~~~~~l~~~~~d~~~ 265 (419) ....+..-..+.+...+.|-.+++-.... +.+..+.......-...... -.+.-.-..++.++..+........+ T Consensus 267 a~~~~~S~~~~~~~~~~~~~lv~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 342 (511) T protein:vir:78 267 LYDNAESDTANYMSDLNDAMLLIKGNLNL----DPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGT 342 (511) T ss_pred HHHHHHHHHHHHHHHhhcchhheecCccC----CchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHH Confidence 76666665666666666666655432211 11222221110000000000 00000011234455545544445566 Q ss_pred HHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhh Q lcl|Aclame:pro 266 IDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQY 334 (419) Q Consensus 266 ~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~ 334 (419) ....+...+.|+..-++|....+.. ++.++..+. ......+...+...++.|..-+...--........ T Consensus 343 e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~ 422 (511) T protein:vir:78 343 EAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFN 422 (511) T ss_pred HHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc Confidence 7788888999999999987544322 111111111 11112222333333322222221111000011111 Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccc--------eeeeccccccccccccccCCCC Q lcl|Aclame:pro 335 FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGD--------IYLSPMNMVDASKPQPIPMGKT 404 (419) Q Consensus 335 ~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD--------~~~~~~n~~~~~~~~~~~~~~~ 404 (419) .+.+.+..-...+..+.++.+.++. |+++..-+.+++++-+-+ .-+ ..-........+..+.....+. T Consensus 423 ~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (511) T protein:vir:78 423 TVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD 500 (511) T ss_pred cceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC Confidence 2344445556778888899888874 789988888887653311 111 0000000000000011111111 Q ss_pred CCccccccchh Q lcl|Aclame:pro 405 EPTKAALDEIG 415 (419) Q Consensus 405 ~~~~~~~~e~~ 415 (419) ++++...+|.+ T Consensus 501 ~~~~~~~~e~~ 511 (511) T protein:vir:78 501 DDTKDTVDKKE 511 (511) T ss_pred CCccCcccccC Confidence 22222233333 No 204 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=97.28 E-value=0.00011 Score=42.34 Aligned_cols=397 Identities=10% Similarity=0.007 Sum_probs=168.2 Q ss_pred CCccchhccc----ccccccccchHHHHhh-cCCCcc-----cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeec Q lcl|Aclame:pro 1 MFFSRQLLSN----LGQTQPGSGGWVSALL-GSARSE-----AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERS 70 (419) Q Consensus 1 M~f~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~ 70 (419) |...+.+.+- .....+.- .-+.... |..... .....-...-+.++.....++..+..+-+-|+.+...+ T Consensus 39 ~~~~~~i~~~i~~~~~~~~~r~-~~l~~Yy~g~~~il~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~~d 117 (511) T protein:vir:96 39 LQNVNEVSKYIEHHMDYQRPRL-KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGNPIQYQDDD 117 (511) T ss_pred hcCHHHHHHHHHHHHHhhhHHH-HHHHHHhhccCccccccCcccccccCcceeecchHHHHHHHHhhhhcccCceeecCc Confidence 1111111110 00000000 0011111 111000 00000011113346677788888888888887763211 Q ss_pred CCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce--e--- Q lcl|Aclame:pro 71 GDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--K--- 145 (419) Q Consensus 71 ~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~--~--- 145 (419) ++ ....+..++. . | ....+...+..+++.+|.||+++.++..|.+ .+..++|..+.+..+... . T Consensus 118 ~~-----~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~ 186 (511) T protein:vir:96 118 KD-----VLEAIEAFND-L-N---DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIA 186 (511) T ss_pred hH-----HHHHHHHHHh-h-c---ChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEE Confidence 11 1123333332 2 2 3345666788899999999999998888865 355667777766655321 1 Q ss_pred -EEEEee-c-----c------cccccceEEEecC-----------------C-----CC----CCcccccHHHHHHHHHH Q lcl|Aclame:pro 146 -PMYRVA-G-----A------DPLPQRLVHHVRW-----------------M-----SI----NGYTGLSPVLLHANAIG 186 (419) Q Consensus 146 -~~~~~~-~-----~------~~~~~~~i~~~~~-----------------~-----~~----~~~~G~s~~~~~~~~i~ 186 (419) +.++.. . . ..+.++.+++... + |. +...|.|.+..+...++ T Consensus 187 ~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liD 266 (511) T protein:vir:96 187 GVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLID 266 (511) T ss_pred EEEEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHH Confidence 111110 0 0 0011111111100 0 00 12257788888777777 Q ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhcccc-ccCcceecCCCceeeecCcChhhHHH Q lcl|Aclame:pro 187 HAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSG-NAKKVALLQEGMKFKPLSMTNVDAAL 265 (419) Q Consensus 187 ~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-n~g~~~vl~~g~~~~~l~~~~~d~~~ 265 (419) ....+..-..+.+...+.|-.+++-.... +.+..+.......-...... -.+.-.-..++.++..+........+ T Consensus 267 a~~~~~S~~~~~~~~~~~~~lv~~G~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 342 (511) T protein:vir:96 267 LYDNAESDTANYMSDLNDAMLLIKGNLNL----DPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGT 342 (511) T ss_pred HHHHHHHHHHHHHHHhhcchhheecCccC----CchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHH Confidence 76666665666666666666655432211 11222221110000000000 00000011234455545544445566 Q ss_pred HHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHHHhhccChhhhhhh Q lcl|Aclame:pro 266 IDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSERKQY 334 (419) Q Consensus 266 ~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~ 334 (419) ....+...+.|+..-++|....+.. ++.++..+. ......+...+...++.|..-+...--........ T Consensus 343 e~~~~~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~~~~~~~ 422 (511) T protein:vir:96 343 EAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDANKDFN 422 (511) T ss_pred HHHHHHHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccc Confidence 7788888999999999987544322 111111111 11112222333333322222221111000011111 Q ss_pred hhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccc--------eeeeccccccccccccccCCCC Q lcl|Aclame:pro 335 FIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGD--------IYLSPMNMVDASKPQPIPMGKT 404 (419) Q Consensus 335 ~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD--------~~~~~~n~~~~~~~~~~~~~~~ 404 (419) .+.+.+..-...+..+.++.+.++. |+++..-+.+++++-+-+ .-+ ..-........+..+.....+. T Consensus 423 ~i~~~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (511) T protein:vir:96 423 TVRYVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQD 500 (511) T ss_pred cceEEeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCC Confidence 2344445556778888899888874 789988888887653311 111 0000000000000011111111 Q ss_pred CCccccccchh Q lcl|Aclame:pro 405 EPTKAALDEIG 415 (419) Q Consensus 405 ~~~~~~~~e~~ 415 (419) ++++...+|.+ T Consensus 501 ~~~~~~~~e~~ 511 (511) T protein:vir:96 501 DDTKDTVDKKE 511 (511) T ss_pred CCccCcccccC Confidence 22222233333 No 205 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=97.25 E-value=0.00011 Score=42.18 Aligned_cols=393 Identities=10% Similarity=0.001 Sum_probs=167.2 Q ss_pred CC--------ccchhcc----cccccccccchHHHHhhcCC-Ccc-----cccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MF--------FSRQLLS----NLGQTQPGSGGWVSALLGSA-RSE-----AGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~--------f~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) |+ ..+.+.+ ......+.- .-+.....+- ... .........-+..+.....++..+..+.+- T Consensus 31 ~~~~e~~~~~~~~~i~~~i~~~~~~~~~r~-~~l~~Yy~g~~~i~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl~g~ 109 (511) T protein:vir:99 31 YDGTESDLLQNVNEVSKYIEHHMDYQRPRL-KVLSDYYEGKTKNLVELTRRKEEYMADNRVAHDYASYISDFINGYFLGN 109 (511) T ss_pred cchhhhhhhccHHHHHHHHHHHHHhhHHHH-HHHHHHhcccCccccccCcccccccCcceeecchHHHHHHHHHhhhccc Confidence 11 1111111 000000000 0011111111 000 000000111133456677888888888888 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEcc Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGP 142 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~ 142 (419) |+.+...++. ....+..++. . | ........+..+++.+|.||+++.++..|.+ .+..++|..+.+..+. T Consensus 110 p~~~~~~d~~-----~~~~l~~~~~-~-n---~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vyd~ 178 (511) T protein:vir:99 110 PIQYQDDDKD-----VLEAIEAFND-L-N---DVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDN 178 (511) T ss_pred CceeecCchH-----HHHHHHHHHh-h-c---CHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcC Confidence 8876322111 1123333332 2 2 3445666788899999999999998888865 4566677777666553 Q ss_pred ce--e----EEEEee-----c-c------cccccceEEEecC-----------------CC---------CCCcccccHH Q lcl|Aclame:pro 143 DL--K----PMYRVA-----G-A------DPLPQRLVHHVRW-----------------MS---------INGYTGLSPV 178 (419) Q Consensus 143 ~~--~----~~~~~~-----~-~------~~~~~~~i~~~~~-----------------~~---------~~~~~G~s~~ 178 (419) .. . +.++.. . . ....++.+++.+. ++ .+...|.|.+ T Consensus 179 ~~~~~~~~~vr~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~ 258 (511) T protein:vir:99 179 TIERNSIAGVRYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDY 258 (511) T ss_pred CCCCceEEEEEEEEeeecccCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCch Confidence 21 1 111100 0 0 0011111111110 00 0123577888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHH---HHHHhccccccCcceecCCCceeee Q lcl|Aclame:pro 179 LLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG---WNAKFGGSGNAKKVALLQEGMKFKP 255 (419) Q Consensus 179 ~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~n~g~~~vl~~g~~~~~ 255 (419) ..+...++....+..-..+.+...+.|-.+++-.... +.+.....++. +.....- -.+...-.++|.++.. T Consensus 259 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~G~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~ 332 (511) T protein:vir:99 259 EKVITLIDLYDNAESDTANYMSDLNDAMLLIKGNLNL----DPVEVRKQKEANVLFLEPTVY--ADSEGRETEGSVDGGY 332 (511) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhchhhhhccCccc----Cchhhcccccccceecccccc--cccccccCCCCcceeE Confidence 8777777766666655566666555555554332111 11222221110 0000000 0001122345666666 Q ss_pred cCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHHHH----------HHHHHHHHhhHHHHHHHHHHHhh Q lcl|Aclame:pro 256 LSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIEHQ----------SLQFVIYTLLPWVKRHEQAKTRD 324 (419) Q Consensus 256 l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e~~----------~~~~~~~~i~P~~~~i~~~l~~~ 324 (419) +........+....+...+.|+..-++|....+.. +..++..+... ....+...+.-.++.|..-+... T Consensus 333 l~~~~~~~~~e~~~~~L~~~I~~~s~~P~~~~~~~~gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~ 412 (511) T protein:vir:99 333 IYKQYDVQGTEAYKDRLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNT 412 (511) T ss_pred EeecCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc Confidence 66555566677788889999999999987544322 21111111111 11112222222222222111111 Q ss_pred ccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cc--------ceeeec-ccc-cc Q lcl|Aclame:pro 325 LLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GG--------DIYLSP-MNM-VD 392 (419) Q Consensus 325 ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--gg--------D~~~~~-~n~-~~ 392 (419) --.........+.+.+..-...+..+.++.+.++ .|+++.--+++++++-+.+ .- +..-.. .+. .. T Consensus 413 ~~~~~~~~~~~i~i~f~~~~p~n~~e~~~~~~kl--~GiiS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~ 490 (511) T protein:vir:99 413 RSIDVSKDFNTVRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKNMYQD 490 (511) T ss_pred CCcccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccc Confidence 0000000111233334445567888889888877 4889998888888653311 10 000000 000 01 Q ss_pred ccccccccCCCCCCccccccc Q lcl|Aclame:pro 393 ASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~e 413 (419) .+.....+....++.++...| T Consensus 491 ~~~~~~~~~~~~~~~~~d~~e 511 (511) T protein:vir:99 491 PRNINDDEQDDSTKDSIDKKE 511 (511) T ss_pred CCCCCCCCCCCCCcCcccccC Confidence 111111111111112222222 No 206 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=97.25 E-value=0.00012 Score=42.15 Aligned_cols=391 Identities=9% Similarity=-0.007 Sum_probs=163.1 Q ss_pred CCccchhcccc----cccccccchHHH---HhhcC-------CCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MFFSRQLLSNL----GQTQPGSGGWVS---ALLGS-------ARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~f~~~~~~~~----~~~~~~~~~~~~---~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) ++ .+...... .........+.. .++.. ..........+.+-+.+....-.++..+..+-+-|+++ T Consensus 16 ~~-~~~i~~~~~~~~~~~~~~~~~YY~g~h~Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Ivd~~~~yl~G~Pv~~ 94 (537) T protein:vir:78 16 LL-NTEITTYMASNHIKWAHIGENYYNQENDIEKSRIFYMNDKGQLREDNYASNVKISHGFFTELVDQLAQYLLSNGVEV 94 (537) T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccccccccccccccccccccccccchHHHHHHHHhhhhcccCcee Confidence 11 00000000 000000000000 00000 00000000011112334456667888888888888886 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeE Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKP 146 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~ 146 (419) .-..++. ..+...|+..-+ .........+..++..+|.||.++..+..|.+. +..++|..+-+..+..+.. T Consensus 95 ~~~d~~~------~e~~~~l~~~~~--~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~~-~~~i~p~~~~pv~d~~~~~ 165 (537) T protein:vir:78 95 KVKDEDN------TQLDEILQEYFD--EDFQATIDTLVTNASKKGFEGIFARTTSEGKLK-FQTVDGLTLIPVFDDYGVL 165 (537) T ss_pred ecCcchh------HHHHHHHHHHhh--ccHHHHHHHHHHHHhhcCeeEEEeeecCCCceE-EEEEccceeEEEEcCCCCc Confidence 4322211 123344443221 123345567778899999999999888888654 5556666665555433211 Q ss_pred ----EEEe----ecc----------cccccceEEEec------------------------------------------- Q lcl|Aclame:pro 147 ----MYRV----AGA----------DPLPQRLVHHVR------------------------------------------- 165 (419) Q Consensus 147 ----~~~~----~~~----------~~~~~~~i~~~~------------------------------------------- 165 (419) .++. ... ....++.|++.+ T Consensus 166 ~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 245 (537) T protein:vir:78 166 KMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFEDTDGYQV 245 (537) T ss_pred eeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeeccccccccccccccccc Confidence 0000 000 001111111110 Q ss_pred -CCCC---------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHh Q lcl|Aclame:pro 166 -WMSI---------NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKF 235 (419) Q Consensus 166 -~~~~---------~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (419) .+++ +.-.|.|.+......++....+....++.+.....|-.++. +.. .+..++....++. T Consensus 246 ~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~ilvi~--g~~-~~~~~~~~~~l~~------ 316 (537) T protein:vir:78 246 LGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEAIYVVK--GFS-GDSTDKLRQNIKA------ 316 (537) T ss_pred cccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCceeeee--cCC-CccchhHHHHHhh------ Confidence 0111 12257888888888888887777777777776665555544 221 1112222222211 Q ss_pred ccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccH------------HHHHH Q lcl|Aclame:pro 236 GGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNI------------EHQSL 303 (419) Q Consensus 236 ~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~------------e~~~~ 303 (419) .+.+.+-+.|.++.-+.....+.......+...+.|...-.+|.. .....++-|.. ..... T Consensus 317 -----~~~i~v~~d~~~v~~l~~~~~~~~~e~~ld~L~~~I~~~s~~~~~--~~~~~gn~SGvAlk~~~~~l~~ka~~ke 389 (537) T protein:vir:78 317 -----KKMIGVNGDNAGMEIQTVSIPYEARKAKMDIDVENIYRSGMGFNS--TAVGDGNVTNVVIKSRYTLLAMKARKME 389 (537) T ss_pred -----cCceeecCCCCceeEEEecCCHHHHHHHHHHHHHHHHHhcCCCCC--ccccccCCcHHHHHHHHhhHHHHHHHHH Confidence 122333333434444444333344455566666777655444421 11111222221 12222 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCC--- Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKG--- 380 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~g--- 380 (419) .++...+.-.++.|..-+..+-....+ ...+.+.+..-+..|..+.++.+.+++.+|+++..-+.+.+++-.-+. T Consensus 390 ~~f~~~l~~~~~~i~~~~~~~~~~~~d--~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~ek 467 (537) T protein:vir:78 390 TSLRKVLRWCADMVVSDIALRGLGEYD--SNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETLK 467 (537) T ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccc--cceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHHH Confidence 333444444444443333222111111 223444455557789999999999999999999888877765422110 Q ss_pred -----------------cceeeecccccc----cccc---------ccccCCCCCCcccccc-chhcccC Q lcl|Aclame:pro 381 -----------------GDIYLSPMNMVD----ASKP---------QPIPMGKTEPTKAALD-EIGRILS 419 (419) Q Consensus 381 -----------------gD~~~~~~n~~~----~~~~---------~~~~~~~~~~~~~~~~-e~~~~~~ 419 (419) .+.-.......+ .... .+...+.++++..+.. .+.--.. T Consensus 468 ~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:78 468 LIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQPVADPNVVPPTDPNAVPQT 537 (537) T ss_pred HHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCCCCCCCCCCCCCCccCCCC Confidence 000000000000 0000 0000000000000000 0000000 No 207 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=97.23 E-value=0.00012 Score=42.03 Aligned_cols=391 Identities=11% Similarity=0.022 Sum_probs=162.7 Q ss_pred CCcc----chhcccccccccccchHHHHhhcCCC--cccccccCHH---HHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MFFS----RQLLSNLGQTQPGSGGWVSALLGSAR--SEAGQVVTPA---SALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~f~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |.-- .++.+......+.- .-+....-+-. ...+..+..+ .-........+|+..++.+--..|.+ .+ T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~-~~~~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~---~~ 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNL-LEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFRI---SE 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhcccccchhhhhhhhhcchHHHHHHHHHhhhccCceec---CC Confidence 2200 00000000000000 00011111100 0011111111 01123455667777776654344432 11 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec------CCCceEEEEEecCceeEEEEccce- Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD------QDGVIQGLYPLDNEAVTVMKGPDL- 144 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~------~~G~~~~l~~~~~~~v~~~~~~~~- 144 (419) +. .....+..+++ . | ........+..+.+.+|.||+++.+. ..|.+ .+.+++|..+.+.++... T Consensus 77 d~---~~~~~l~~i~~-~-N---~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~-~i~~~~p~~~~~i~D~~~~ 147 (480) T protein:vir:78 77 DS---EGLEELWNWWQ-A-N---DLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNT 147 (480) T ss_pred Cc---hhHHHHHHHHH-h-c---CHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCee-EEEEEcccceEEEEcCCCc Confidence 11 11233444453 2 2 33456677889999999999988653 33443 466777777777665321 Q ss_pred -----eEEEEe---------------e---------ccc----c---------cccceEEEecCCC-CCCcccccHHHH- Q lcl|Aclame:pro 145 -----KPMYRV---------------A---------GAD----P---------LPQRLVHHVRWMS-INGYTGLSPVLL- 180 (419) Q Consensus 145 -----~~~~~~---------------~---------~~~----~---------~~~~~i~~~~~~~-~~~~~G~s~~~~- 180 (419) .+.++. . +.. . +..=.|+++.+++ ....+|.|-+.. T Consensus 148 ~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~ 227 (480) T protein:vir:78 148 RRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPE 227 (480) T ss_pred cceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccchhHH Confidence 011110 0 000 0 0000234444433 345678886653 Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecCcC Q lcl|Aclame:pro 181 HANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMT 259 (419) Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~ 259 (419) +...++..............-.+.|..++.- ... .+...+.-...|.. ..+.++.++ ++.++.++... T Consensus 228 i~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G--~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 296 (480) T protein:vir:78 228 LRKVTDAASRTLMNLQSASQILGTPLRVISG--VTT---DELTNDGENTTLDI------YYGRILTLASEAAKISEFKAA 296 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhC--CCc---cccccccccchhhh------hhhhhccCCCCCceEEecCcc Confidence 4444554444433334444444555555431 110 11000100111111 113345544 45677776654 Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc----------cChh Q lcl|Aclame:pro 260 NVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL----------LLPS 329 (419) Q Consensus 260 ~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l----------l~~~ 329 (419) ..+ .+.+..+..+.+|+..-++|+..+|.... |.++ ..+ ..+....+.-.+...+..+...| .... T Consensus 297 ~~~-~~~~~l~~~i~~~~~~~~~p~~~fg~~~~-n~~S-g~A-l~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~ 372 (480) T protein:vir:78 297 ELR-NFAEEMEVFRKEAASITGLPPQYLSSSSE-NPAS-AEA-IIATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGRE 372 (480) T ss_pred CHH-HHHHHHHHHHHHHhcccCCCHHHhccccC-chhH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC Confidence 433 37788889999999999999999975332 1111 111 12222222322333222222111 1111 Q ss_pred hh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC--Ccc------------eeeecccccc Q lcl|Aclame:pro 330 ER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK--GGD------------IYLSPMNMVD 392 (419) Q Consensus 330 ~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~--ggD------------~~~~~~n~~~ 392 (419) .. ....+.+.+......+..+.+..+.+++.+| +++..-+++++|+.+-+ ... .+..+..-.+ T Consensus 373 ~~~~~~~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 452 (480) T protein:vir:78 373 VTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQA 452 (480) T ss_pred ccccceeeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCCC Confidence 10 1122333333444567778888888887766 67777778889987632 111 0111100000 Q ss_pred ccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 393 ASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) ...+.+......++++.+.+..||-=+ T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480) T protein:vir:78 453 DATPKPTVTETKTETQTSPSGFNRTKT 479 (480) T ss_pred ccccCCCCCCCCCccCCCcccCCCcCC Confidence 000011111111122222222222222 No 208 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=97.14 E-value=0.00015 Score=41.49 Aligned_cols=391 Identities=10% Similarity=0.002 Sum_probs=159.0 Q ss_pred CC-cc---chhcccccccccccchHHHHhhcCCC--cccccccCHH---HHhccHHHHHHHHHHHHhhccCCeeEeeecC Q lcl|Aclame:pro 1 MF-FS---RQLLSNLGQTQPGSGGWVSALLGSAR--SEAGQVVTPA---SALSLTVLQNCVTLLAESIAQLPVELYERSG 71 (419) Q Consensus 1 M~-f~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~ 71 (419) |. .. .++...-....+.- .-+....-+-. ...+..+..+ .-........+|+..+..+--..|.+ .+ T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~-~~l~~Yy~G~~~i~~~~~~~~~~~~~~~~~~n~~~~ivd~~~~~l~~~g~~~---~~ 76 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNL-LEAEAYRNGTRRLKTIGIGAPPELAYLDVQPGWVATYLRTLSDRLDIEGFRI---SE 76 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccccccccchhHhhhhhhcchHHHHHHHHHhhhccCceec---CC Confidence 33 00 00000000000000 00111111110 0111111111 01123445667777776554334432 11 Q ss_pred CcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec------CCCceEEEEEecCceeEEEEccce- Q lcl|Aclame:pro 72 DDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD------QDGVIQGLYPLDNEAVTVMKGPDL- 144 (419) Q Consensus 72 ~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~------~~G~~~~l~~~~~~~v~~~~~~~~- 144 (419) +. .....+..++. .. ........+..+++.+|.||+++.+. ..|.+ .+..++|..+.+.++... T Consensus 77 d~---~~~~~l~~i~~-~N----~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~~-~i~~~~p~~~~~~~D~~~~ 147 (480) T protein:vir:78 77 DS---EGLEELWNWWQ-AN----DLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNT 147 (480) T ss_pred Cc---hhHHHHHHHHH-hc----CHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCee-EEEEEcccceEEEEcCCCc Confidence 11 11234444453 22 33456777889999999999988653 23433 356677777776665320 Q ss_pred -e----EEEE---------------eec---------cc---c----------cccceEEEecCCC-CCCcccccHHHH- Q lcl|Aclame:pro 145 -K----PMYR---------------VAG---------AD---P----------LPQRLVHHVRWMS-INGYTGLSPVLL- 180 (419) Q Consensus 145 -~----~~~~---------------~~~---------~~---~----------~~~~~i~~~~~~~-~~~~~G~s~~~~- 180 (419) . +.++ ..+ .. . +..=.|+++.+++ ..+.+|.|-+.. T Consensus 148 ~~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~ 227 (480) T protein:vir:78 148 RRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPE 227 (480) T ss_pred cceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCcccchhh Confidence 0 1110 000 00 0 0000234444433 344678887653 Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecCcC Q lcl|Aclame:pro 181 HANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLSMT 259 (419) Q Consensus 181 ~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~~~ 259 (419) +...++..............-.+.|..++.- ....+..++ .-...|... .+.++.++ ++.++.++... T Consensus 228 v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~G--~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 296 (480) T protein:vir:78 228 LRKVTDAASRTLMNLQSASQILGTPLRVISG--VTTDELTND---GENTTLDIY------YGRILTLASEAAKISEFKAA 296 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhhhc--CCccccccc---cccchhhhh------hhhhccCCCCCceEEecCcc Confidence 4445554444443344444444556555431 111111111 001111111 12344443 45777776654 Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhhc----------cChh Q lcl|Aclame:pro 260 NVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRDL----------LLPS 329 (419) Q Consensus 260 ~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~l----------l~~~ 329 (419) ..+. +++..+..+.+|+..=++|+..+|.... +.++.+..+ +....+.-.+...+..|...| .... T Consensus 297 ~~~~-~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Alk--~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~ 372 (480) T protein:vir:78 297 ELRN-FAEEMEVFRKEAASITGLPPQYLSSSSE-NPASAEAII--ATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGRE 372 (480) T ss_pred CHHH-HHHHHHHHHHHHhcccCCChHHhccccC-cchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC Confidence 3333 6777888889999999999999976432 211222221 222222222333222222111 1100 Q ss_pred hh-hhhhhhhhhhhhhhccHHHHHHHHHHHHhCC--CcCHHHHHHHhCCCCCC--Ccce--------eeecccccccccc Q lcl|Aclame:pro 330 ER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWG--WLSINDIRRLENMPPVK--GGDI--------YLSPMNMVDASKP 396 (419) Q Consensus 330 ~~-~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~lGl~p~~--ggD~--------~~~~~n~~~~~~~ 396 (419) .. ....+.+.+......+..+.++.+.+++.+| +++..-+++.+|+.+-+ ..+. ..-...-...+.+ T Consensus 373 ~~~~~~~i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 452 (480) T protein:vir:78 373 VTEEYTRLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQA 452 (480) T ss_pred ccccceeeeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccccC Confidence 00 1112333333334567778888888877765 67777788888887632 1100 0000000000000 Q ss_pred c----cccCCCCCCccccccchhcccC Q lcl|Aclame:pro 397 Q----PIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 397 ~----~~~~~~~~~~~~~~~e~~~~~~ 419 (419) . +.....+++++.+.+--+|-=. T Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (480) T protein:vir:78 453 DATPKPTVTETKTETQTSPSGFNRTKT 479 (480) T ss_pred CCCCCCCCCCCCCccccccCCCCcccC Confidence 0 0000000111111111111111 No 209 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=96.93 E-value=0.00025 Score=40.29 Aligned_cols=371 Identities=9% Similarity=-0.034 Sum_probs=160.2 Q ss_pred CCc------------cchhcccccccccccchHHHHhhcCCCc-------c--cc--cccCHHHHhccHHHHHHHHHHHH Q lcl|Aclame:pro 1 MFF------------SRQLLSNLGQTQPGSGGWVSALLGSARS-------E--AG--QVVTPASALSLTVLQNCVTLLAE 57 (419) Q Consensus 1 M~f------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~--~~~~~~~~~~~~~v~~~i~~ia~ 57 (419) |+- ..++...-....+. -..+.....+-.. . .. ...-+..-+.++....+++..+. T Consensus 16 ~~~~~~~~~~~~~~~i~~~i~~~~~~~~r-~~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~~~ 94 (478) T protein:vir:10 16 VVEQIKPKYETQEEMILRLVREHKENIDN-ITMGERYYNHHPDILDAPFKRDVNGDYDETKPDWRMYTNYHQNLVDQKVA 94 (478) T ss_pred HHHHhhhccCChHHHHHHHHHHHHHHHHH-HHHHHHHhcccccccccchhhhcccccccccccceeccchHHHHHHHHhh Confidence 110 00000000000000 0000111111000 0 00 00001111235677789999998 Q ss_pred hhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeE Q lcl|Aclame:pro 58 SIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVT 137 (419) Q Consensus 58 ~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~ 137 (419) .+-+-|+.+...+++ ....+...+. | ........+..+.+.+|.+|+++..+..|.+. +..++|..+. T Consensus 95 yl~g~p~~~~~~~~~-----~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~~-~~~~~p~~~~ 162 (478) T protein:vir:10 95 YAVANPVTFGVDNDK-----ALKQIQHTLN---H---KWDDKLVDILTAASNKGIEWVQPYVDEEGEFK-TFRVPAEQAV 162 (478) T ss_pred hhcccCceeecCChH-----HHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCceE-EEEEcccceE Confidence 888888886432111 1122333332 2 34556666788999999999999888878654 5566777776 Q ss_pred EEEccc--ee----EEEEee-cccc---cccce---------------------------------------EEEecCCC Q lcl|Aclame:pro 138 VMKGPD--LK----PMYRVA-GADP---LPQRL---------------------------------------VHHVRWMS 168 (419) Q Consensus 138 ~~~~~~--~~----~~~~~~-~~~~---~~~~~---------------------------------------i~~~~~~~ 168 (419) +..+.. +. +.++.. +... ..++. |+++++ T Consensus 163 ~v~d~~~~~~~~~~ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-- 240 (478) T protein:vir:10 163 PIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKN-- 240 (478) T ss_pred EEEcCCCCCceEEEEEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEecc-- Confidence 655421 11 111100 0000 00111 122211 Q ss_pred CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec- Q lcl|Aclame:pro 169 INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL- 247 (419) Q Consensus 169 ~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl- 247 (419) ...|.|.+......++....+.....+.+...+.|-.+++--. .+...+....++ + .+++.+ T Consensus 241 --~~~g~sd~e~v~~liDa~~~~~S~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~--------~----~~~~~~~ 303 (478) T protein:vir:10 241 --NPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYE---GEDMKDFMHNLK--------Y----YKAISVA 303 (478) T ss_pred --CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcceeeecCC---cccccchhhhhh--------h----CceeEec Confidence 2357888887777777776666666666666666655544221 111111111111 1 123333 Q ss_pred -CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcc-cccCcccccHH----------HHHHHHHHHHhhHHHH Q lcl|Aclame:pro 248 -QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVN-ELERATFSNIE----------HQSLQFVIYTLLPWVK 315 (419) Q Consensus 248 -~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g-~~~~~~~sn~e----------~~~~~~~~~~i~P~~~ 315 (419) +.|.++..+........+.+..+...+.|+..-++|..... ..++.++..++ ......+...+.-.++ T Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~ 383 (478) T protein:vir:10 304 GESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQ 383 (478) T ss_pred CCCCCcceEEeecCCHHHHHHHHHHHHHHHHHHhCCcCcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 23344444444455666778888899999999999854322 11111111111 1111122222222222 Q ss_pred HHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceee-----ecc Q lcl|Aclame:pro 316 RHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYL-----SPM 388 (419) Q Consensus 316 ~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~-----~~~ 388 (419) .+.+ ++.... ....+.+.++.-...+..+.++.+.++ +|+++..-+.+++++-.-+ ..++.- ... T Consensus 384 li~~-----~~~~~~-d~~~i~i~f~~~~p~~~~e~~~~~~~~--~g~iS~et~i~~~~~v~d~~~E~~ri~~E~~~~~~ 455 (478) T protein:vir:10 384 YIID-----FYRLDV-RVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILGNHSWVQDPVAEMERIEQENIELNQ 455 (478) T ss_pred HHHH-----HhCCCc-ccccceEEeCCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHH Confidence 2211 111111 111233333445566888888888766 6889988888887652211 111000 000 Q ss_pred ccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 389 NMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 389 n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) ............ +.+.+++...| T Consensus 456 ~~~~~~~~~~d~--~~~~~~d~~~e 478 (478) T protein:vir:10 456 QLPDIEEGLNDE--QQRQSEDNQSE 478 (478) T ss_pred hccccCCCCccc--ccccCcCCCCC Confidence 001111111110 11111111112 No 210 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=96.91 E-value=0.00027 Score=40.19 Aligned_cols=382 Identities=11% Similarity=-0.003 Sum_probs=171.8 Q ss_pred CCccchhcccccc------------------cccccchH------HHHhhcCCCcc-cccc----cCHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ------------------TQPGSGGW------VSALLGSARSE-AGQV----VTPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~~~~~------------------~~~~~~~~------~~~~~~~~~~~-~~~~----~~~~~~~~~~~v~~~ 51 (419) |+++.+.+.-... ....+... ...++.+...+ .... ..............+ T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~~~~~~~~~~~slnl~~~i 80 (505) T protein:vir:79 1 MAFWDTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNSYGDTQKHELQSVNVTKLA 80 (505) T ss_pred CchHHHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCccccccccCCCccccceeecchHHHH Confidence 7755433221110 01111111 11222221111 0000 001112223445666 Q ss_pred HHHHHHhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEe Q lcl|Aclame:pro 52 VTLLAESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPL 131 (419) Q Consensus 52 i~~ia~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~ 131 (419) ++..|+-+..=|..+...+ ......+..+|. .-......+..+.+....|.+++.+..+. |.+ .+..+ T Consensus 81 ~~~~A~ll~~e~~~i~~~d-----~~~~e~l~~i~~-----~n~f~~~~~~~~e~a~a~G~~~~k~~~D~-~~~-~i~~v 148 (505) T protein:vir:79 81 SAKLASLIFNEQCQVTVSD-----ETANDFLDDVFQ-----QNDFYTTFEEKLEEWIALGSGCVRPYVDS-GKI-KLAWA 148 (505) T ss_pred HHHHHhhhcCCCceeecCC-----hHHHHHHHHHHH-----hccHHHHHHHHHHHHhhcCCeEEEEEEeC-Cce-EEEEE Confidence 6777776665554443211 111123333332 11234455677788888899888776553 332 34444 Q ss_pred cCceeEEEE-ccce-------------------eE---E--------EE----ee--------ccc----------cccc Q lcl|Aclame:pro 132 DNEAVTVMK-GPDL-------------------KP---M--------YR----VA--------GAD----------PLPQ 158 (419) Q Consensus 132 ~~~~v~~~~-~~~~-------------------~~---~--------~~----~~--------~~~----------~~~~ 158 (419) ++..+-+.. +.+. ++ . ++ .. |.. .+.+ T Consensus 149 ~ad~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~ 228 (505) T protein:vir:79 149 TADQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEP 228 (505) T ss_pred cCCeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCc Confidence 555443321 1110 00 0 00 00 000 0001 Q ss_pred ---------ceEEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceE----EEeCCCCCchhh Q lcl|Aclame:pro 159 ---------RLVHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGV----IERPTDAPALKD 220 (419) Q Consensus 159 ---------~~i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~----~~~~~~~~~~~~ 220 (419) -.+.+++.+.. ....|+|.+.-+...++..........+.|+.|-..-.+ +......+++.. T Consensus 229 ~~~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~ 308 (505) T protein:vir:79 229 QVKITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKTGSSYGGQAS 308 (505) T ss_pred ceeecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcccCCCCcccc Confidence 01223333211 235799999999999998888777777777755432222 222221111100 Q ss_pred HHHHHHHHHHHHHHhccccccCcceec-CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH Q lcl|Aclame:pro 221 QASVDRITDGWNAKFGGSGNAKKVALL-QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIE 299 (419) Q Consensus 221 ~~~~~~~~~~~~~~~~g~~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e 299 (419) .... ..+.+.......+-. +++..++.++....+-++.+..+...++|+...|+++..+|..+++..+ .. T Consensus 309 ~~~~--------~~fd~~~~~y~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~T-At 379 (505) T protein:vir:79 309 ETHP--------PMFDPDETVYQAMYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQT-AT 379 (505) T ss_pred cccc--------cCCCccceeeeeccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccch-HH Confidence 0000 000111010001111 2334577777777777888899999999999999999999876654432 22 Q ss_pred HH-------------HHHHHHHHhhHHHHHHHHHHHhhccCh-------hhhhhhhhhhhhhhhhhccHHHHHHHHHHHH Q lcl|Aclame:pro 300 HQ-------------SLQFVIYTLLPWVKRHEQAKTRDLLLP-------SERKQYFIEYNLAGLLRGDQSSRYAAYAVGR 359 (419) Q Consensus 300 ~~-------------~~~~~~~~i~P~~~~i~~~l~~~ll~~-------~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~ 359 (419) +. ....++.+|..++..|..-.....+.. ..-..+.+.++++.-...|.++..+...+++ T Consensus 380 ei~s~~~~l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v 459 (505) T protein:vir:79 380 EVVTNNSQTYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAV 459 (505) T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHH Confidence 22 112223333333333321111100000 0111234556666767788899999999999 Q ss_pred hCCCcCHHHHHHHh-CCCCCCCcceeeeccccccccccccccC-CCCCCccccccc Q lcl|Aclame:pro 360 QWGWLSINDIRRLE-NMPPVKGGDIYLSPMNMVDASKPQPIPM-GKTEPTKAALDE 413 (419) Q Consensus 360 ~~g~~T~NE~R~~l-Gl~p~~ggD~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~e 413 (419) .+|+++.-+++... |++.- ..++-+. . ....+. ..++...-. .| T Consensus 460 ~~Gi~s~e~~l~~~~~~~ee-ea~~el~-----r---i~~E~~~~~p~~~~~g-g~ 505 (505) T protein:vir:79 460 QAQVMPKKQFLMRNYGLDEE-EADEWLA-----Q---IDAENSTAEPEFNQFG-GD 505 (505) T ss_pred HcCCCCHHHHHHhcCCCChH-HHHHHHH-----H---HHHhccccCCCchhcc-CC Confidence 99999999887663 44331 1111110 0 000000 011111111 11 No 211 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=96.88 E-value=0.00028 Score=40.04 Aligned_cols=371 Identities=9% Similarity=-0.027 Sum_probs=165.4 Q ss_pred CC------ccchhcccccccccccchHHHHhhcCCC--------c-------ccccccCHHHHhccHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MF------FSRQLLSNLGQTQPGSGGWVSALLGSAR--------S-------EAGQVVTPASALSLTVLQNCVTLLAESI 59 (419) Q Consensus 1 M~------f~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------~~~~~~~~~~~~~~~~v~~~i~~ia~~i 59 (419) |= +-.+.........+.- ........+-. . .-...-.+..-+.++.....++..++.+ T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Yy~g~~~I~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl 79 (470) T protein:vir:10 1 MELDALKKLIQNTSTSRNDLINNY-KQAVNYYENKTDITTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYV 79 (470) T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhccccchhcccccccccccccCCcccccchHHHHHHhhhhhe Confidence 11 0000000000000000 00000000000 0 0000000111233556667788888888 Q ss_pred ccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEE Q lcl|Aclame:pro 60 AQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVM 139 (419) Q Consensus 60 a~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~ 139 (419) -+-|+.+...++. ..+.+...++. +..+-...+..++..+|.+|.++..+..|.+. +..++|..+-+. T Consensus 80 ~G~p~~~~~~d~~-----~~~~l~~~~~~------~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~~-~~~~~p~~~~~v 147 (470) T protein:vir:10 80 ASVFPDIDVGKDA-----DNKKIIDVLGD------DRALTLNGLLVDSSNAGRAWLHYWIDEDGNFR-YGIIQPDQITPI 147 (470) T ss_pred eccceeeecCchH-----HHHHHHHHHhh------hHHHHHHHHHHHHhhcCeeEEEEEecCCCceE-EEEEcccceEEE Confidence 8888876432211 12234444431 23344456778899999999999988888654 566777777766 Q ss_pred Eccce------eEEEEe-ecc---------cccccce------------------------------------------- Q lcl|Aclame:pro 140 KGPDL------KPMYRV-AGA---------DPLPQRL------------------------------------------- 160 (419) Q Consensus 140 ~~~~~------~~~~~~-~~~---------~~~~~~~------------------------------------------- 160 (419) .+... .+.++. ... ....++. T Consensus 148 ~d~~~~~~~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 227 (470) T protein:vir:10 148 YATTLDNKLLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGR 227 (470) T ss_pred EcCCCCCceEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCe Confidence 54321 111111 000 0000111 Q ss_pred --EEEecCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 161 --VHHVRWMSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGS 238 (419) Q Consensus 161 --i~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (419) |+++++ ...|.|.+......++....+.....+.+...+.|-.+++--. .+..++... .+.. T Consensus 228 vPvv~~~n----n~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lvl~g~~---~~~~~~~~~----~~~~----- 291 (470) T protein:vir:10 228 VPFIEFSK----NKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILVLTNYG---GADLHQFMN----DLRK----- 291 (470) T ss_pred eeEEEeec----CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCcceeeecCC---ccccchhhh----hhhh----- Confidence 122222 2357888888888888877777777777777777776665321 111122222 1111 Q ss_pred cccCcceecC-----CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH----------HHHH Q lcl|Aclame:pro 239 GNAKKVALLQ-----EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIE----------HQSL 303 (419) Q Consensus 239 ~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e----------~~~~ 303 (419) .+.+.++ .+.+++-+......-.+....+...+.|+..-++|..-....+..++..+. .... T Consensus 292 ---~~~i~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~gn~Sg~Alk~~~~~l~~k~~~~~ 368 (470) T protein:vir:10 292 ---YKSIKINNTGNGDNSGVDKLQIDIPVEARDDALKITRKNIFLFGQGIDPANFESSNASGVAIKMLYSHLELKAAKTQ 368 (470) T ss_pred ---cCeEeccCCCCCcCceeEEEeecCChHHHHHHHHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHHHHHHHH Confidence 1223332 123333334333344556777888889999888885322211111111111 1112 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cc Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GG 381 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--gg 381 (419) ..+..++.-.++.|... +.........+.+.++.....|..+.++.+.++ +|+++.--+++.+++-.-+ .. T Consensus 369 ~~~~~~l~~~~~~i~~~-----l~~~~~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l~~~p~v~D~~~E~ 441 (470) T protein:vir:10 369 TYFEHAINELVRAIMRY-----LNFSDADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVAKANPIVDDWQQEL 441 (470) T ss_pred HHHHHHHHHHHHHHHHH-----hcccCcccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHH Confidence 22333333333333222 121122223444555566778899999988876 6899998888887653211 11 Q ss_pred ceeeeccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 382 DIYLSPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 382 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) .++-.- -.. ......+....+....+++| T Consensus 442 eri~~E--~~e-~~~~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 442 KDLAKD--KEE-NDPYSNQADELNGKGVNDEQ 470 (470) T ss_pred HHHHHH--HHH-HHHhhccccccCCCCCCCCC Confidence 111000 000 00000000111111122222 No 212 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=96.84 E-value=0.0003 Score=39.86 Aligned_cols=392 Identities=10% Similarity=0.033 Sum_probs=167.7 Q ss_pred CCccchhcccc-------------------cccccccc-h---HHHHhhcCCCccc-ccccC----HHHHhccHHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSNL-------------------GQTQPGSG-G---WVSALLGSARSEA-GQVVT----PASALSLTVLQNCV 52 (419) Q Consensus 1 M~f~~~~~~~~-------------------~~~~~~~~-~---~~~~~~~~~~~~~-~~~~~----~~~~~~~~~v~~~i 52 (419) |+++.++|.-. ....+... . .+..++.+...+- ...+. ....+..+....+. T Consensus 1 m~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~~i~ 80 (517) T protein:vir:98 1 MKVIQRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRKLSA 80 (517) T ss_pred CchHHHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHHHHH Confidence 55442221111 01111100 0 1122222222211 00000 00112223333444 Q ss_pred HHHHHhhccCCeeEeeecCCcce------eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceE Q lcl|Aclame:pro 53 TLLAESIAQLPVELYERSGDDRK------PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQ 126 (419) Q Consensus 53 ~~ia~~ia~~~~~~~~~~~~~~~------~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~ 126 (419) +.+|+-+..=+..+.-...+... ......+..++. .-.....++..+.+.+..|.+++.+..+. |.+ T Consensus 81 ~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~~-----~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~~- 153 (517) T protein:vir:98 81 DVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVFQ-----HNKFIKNLSDYLEPTFALGGLTVRPYVDN-GEI- 153 (517) T ss_pred HHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHHH-----hccHHHHHHHHHHHHhhhCCEEEEEEEeC-Cee- Confidence 44444443333333222111110 011122333332 11233445556677777798888766553 322 Q ss_pred EEEEecCceeEEE-Ecc-------------------ceeE---E-------------EEe-------e-----ccc---- Q lcl|Aclame:pro 127 GLYPLDNEAVTVM-KGP-------------------DLKP---M-------------YRV-------A-----GAD---- 154 (419) Q Consensus 127 ~l~~~~~~~v~~~-~~~-------------------~~~~---~-------------~~~-------~-----~~~---- 154 (419) .+..++++.+-+. .+. ..++ . |++ . |.. T Consensus 154 ~I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~ 233 (517) T protein:vir:98 154 EFSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLE 233 (517) T ss_pred EEEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCcccccccccc Confidence 2444444444321 110 0000 0 000 0 000 Q ss_pred ----ccccce---------EEEecCCCC-----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEE-----Ee Q lcl|Aclame:pro 155 ----PLPQRL---------VHHVRWMSI-----NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVI-----ER 211 (419) Q Consensus 155 ----~~~~~~---------i~~~~~~~~-----~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~-----~~ 211 (419) .+.++. +.|++.+-. +...|+|....+...+...+........-++.|-. +.++ .. T Consensus 234 ~~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~-~i~vp~~~l~~ 312 (517) T protein:vir:98 234 ELYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQR-TVFVSDVMLRT 312 (517) T ss_pred ccccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCc-ceecChhhhcc Confidence 001111 123332211 23569999999999998888777777777776544 3332 11 Q ss_pred CCCCCchhhHHHHHHHHHHHHHHhccccccCcceec-CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc Q lcl|Aclame:pro 212 PTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL-QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL 290 (419) Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~ 290 (419) ....++..... .| -..+.....+-. .++-.++.++....+-++.+..+...++|+...|+++..+|.. T Consensus 313 ~~~~~g~~~~~-------~~----d~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~ 381 (517) T protein:vir:98 313 VPDESGMPPPQ-------VF----DPDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFD 381 (517) T ss_pred ccCCCCcccCC-------CC----CcccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCccccccc Confidence 11110000000 00 000000000111 1223466666666677889999999999999999999999976 Q ss_pred cCcccccHHHH--HHHHHHHHhhHHHHHHHHHHHh------------hccChhhhhhhhhhhhhhhhhhccHHHHHHHHH Q lcl|Aclame:pro 291 ERATFSNIEHQ--SLQFVIYTLLPWVKRHEQAKTR------------DLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYA 356 (419) Q Consensus 291 ~~~~~sn~e~~--~~~~~~~~i~P~~~~i~~~l~~------------~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~ 356 (419) +.+.. +..+. ...-.-.++.-+...++..|.. .++...-...+.+.+++++-...|.++.++... T Consensus 382 ~~~~k-TATEi~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~ 460 (517) T protein:vir:98 382 GRSMK-TATEIVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYG 460 (517) T ss_pred ccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHH Confidence 65443 23222 1111222333333333333222 122221112344666777777889999999999 Q ss_pred HHHhCCCcCHHHHHHHh-CCCCCCCcceeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 357 VGRQWGWLSINDIRRLE-NMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 357 ~~~~~g~~T~NE~R~~l-Gl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) +++.+|+|++-+++.++ |++.- ..++.+....... ....+....+.......++|. T Consensus 461 ~~v~aG~ms~~~~i~~~~g~~ee-eA~~e~~~i~~E~-~~~~~~~~~~~~~~~~~gd~e 517 (517) T protein:vir:98 461 QAKTFGFIPTVEAIQRIFKVPKK-TAEQWLEEIRKDQ-IELDPVTISQRAQKRMFGDEE 517 (517) T ss_pred HHHhcCCCCHHHHHHHhCCCChH-HHHHHHHHHHHhc-cccCCCCccccccCCCCCCCC Confidence 99999999999987654 76532 1221111100000 000111111111112222222 No 213 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=96.65 E-value=0.00044 Score=39.00 Aligned_cols=370 Identities=9% Similarity=-0.014 Sum_probs=161.0 Q ss_pred CC------ccchhcccccccccccchHHHHhhcCC-------Ccc--ccccc--CHHHHhccHHHHHHHHHHHHhhccCC Q lcl|Aclame:pro 1 MF------FSRQLLSNLGQTQPGSGGWVSALLGSA-------RSE--AGQVV--TPASALSLTVLQNCVTLLAESIAQLP 63 (419) Q Consensus 1 M~------f~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~--~~~~~~~~~~v~~~i~~ia~~ia~~~ 63 (419) .. +.+...... ...+.- .-+.....+- ... ..... -...-+.++....+++..+..+-+-| T Consensus 23 ~~~~~~~~i~~~i~~~~-~~~~~~-~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~ivd~~~~~l~g~~ 100 (478) T protein:vir:10 23 KYETQEEMILRLVREHK-ENIDNI-TMGERYYNHHPDILDAPPKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANP 100 (478) T ss_pred ccCCcHHHHHHHHHHHH-HHHHHH-HHHHHHhcCCCchhccccccccccccccccccceeccchHHHHHHHHHhhhccCC Confidence 00 000000000 000000 0000000000 000 00000 00111334566788888888888888 Q ss_pred eeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccc Q lcl|Aclame:pro 64 VELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD 143 (419) Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~ 143 (419) +.+...++. ....+..+++ | ...+....+..+.+.+|.+|+++..+..|.+. +..++|..+.+..+.. T Consensus 101 ~~~~~~~d~-----~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~~-~~~~~p~~~~~i~d~~ 168 (478) T protein:vir:10 101 VTFGVDNDK-----ALKQIQHTLN---H---KWDDKLVDILTAASNKGIEWVQPYVDEEGEFK-TFRVPAEQAVPIWTNK 168 (478) T ss_pred eeeecCChH-----HHHHHHHHHh---c---CHHHHHHHHHHHHHhcCeEEEEEEecCCCeeE-EEEEcccceEEEEcCC Confidence 876322111 1122333332 2 34556667788999999999999888888753 5566777777665432 Q ss_pred e------eEEEEee-cccc---cccc---------------------------------------eEEEecCCCCCCccc Q lcl|Aclame:pro 144 L------KPMYRVA-GADP---LPQR---------------------------------------LVHHVRWMSINGYTG 174 (419) Q Consensus 144 ~------~~~~~~~-~~~~---~~~~---------------------------------------~i~~~~~~~~~~~~G 174 (419) . .+.++.. +... ..++ .|++++ +...| T Consensus 169 ~~~~~~~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~----n~~~g 244 (478) T protein:vir:10 169 ERDELQAFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWGRVPFIPFK----NNPQE 244 (478) T ss_pred CCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCCccceEEec----cCCCC Confidence 1 1111100 0000 0000 112222 23367 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceec--CCCce Q lcl|Aclame:pro 175 LSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALL--QEGMK 252 (419) Q Consensus 175 ~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl--~~g~~ 252 (419) .|.+......++....+.....+.+...+.|-.+++--. .+...+....++ .++++.+ ++|.+ T Consensus 245 ~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~~~~g~~---~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 309 (478) T protein:vir:10 245 VSDLFMYKTIIDALDKRLSDTQNTFDESVELIYILKGYE---GEDMKDFMHNLK------------YYKAISVAGESGSG 309 (478) T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecCC---ccccchhhhhhh------------hcceEEecCCCCCc Confidence 888887777777777666666666666676765554321 111111111111 1123333 23344 Q ss_pred eeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccc-cCcccccHH----------HHHHHHHHHHhhHHHHHHHHHH Q lcl|Aclame:pro 253 FKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNEL-ERATFSNIE----------HQSLQFVIYTLLPWVKRHEQAK 321 (419) Q Consensus 253 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~-~~~~~sn~e----------~~~~~~~~~~i~P~~~~i~~~l 321 (419) +..+........+.+..+...+.|...-++|..-.... +..++...+ ......+..++...++.+.. T Consensus 310 ~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~-- 387 (478) T protein:vir:10 310 VDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIID-- 387 (478) T ss_pred ceEEeecCChHHHHHHHHHHHHHHHHHhCccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-- Confidence 44444443455667788888899999999886433221 111111111 11111222222222222211 Q ss_pred HhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeee-----cccccccc Q lcl|Aclame:pro 322 TRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLS-----PMNMVDAS 394 (419) Q Consensus 322 ~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~-----~~n~~~~~ 394 (419) ++... .....+.+.++.-...|..+.++++.++ +|+++...+++++++-..+ ..+.+-. ........ T Consensus 388 ---~~g~~-~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~ 461 (478) T protein:vir:10 388 ---FYRLD-VKVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILSNHAWVEDPVAEMERIEQENIELNQQLPDIE 461 (478) T ss_pred ---HhCCC-cccccceEEecCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccc Confidence 11110 0111233333445567888889988776 7899999999999764321 1111100 00011111 Q ss_pred ccccccCCCCCCccccccc Q lcl|Aclame:pro 395 KPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 395 ~~~~~~~~~~~~~~~~~~e 413 (419) ..... ..+.+..++ ..| T Consensus 462 ~~~~~-~~~~~~~~~-~~~ 478 (478) T protein:vir:10 462 EGLNG-EQQRQSENN-QPE 478 (478) T ss_pred cccCC-CCCCCCCCC-CCC Confidence 11000 111111111 112 No 214 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=96.61 E-value=0.00047 Score=38.82 Aligned_cols=368 Identities=8% Similarity=-0.021 Sum_probs=166.6 Q ss_pred CC--ccchhcccccccccccchHHHHhhcCCCc------c--c---ccccCHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGSGGWVSALLGSARS------E--A---GQVVTPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~---~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) +- +.+++........+.- .-......+-.. . . .....+..-+.++....+++..++.+-+-|+.+. T Consensus 26 ~~~~~i~~~i~~~~~~~~~~-~~~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~ 104 (474) T protein:vir:96 26 TQEEMIIRLINDHKPKIDDI-TVGERYYNHDPDVLRLAPKLDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTFS 104 (474) T ss_pred ChHHHHHHHHHHHHHHHHHH-HHHHHHhccCCcchhccchhcccccccccccchhcccchHHHHHHhhhhhhcccCceee Confidence 10 0011111100000000 000111111000 0 0 0000011123456777888888888888888764 Q ss_pred eecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccce--- Q lcl|Aclame:pro 68 ERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDL--- 144 (419) Q Consensus 68 ~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~--- 144 (419) ..++ .....+...+. | ........+..++..+|.+|+++..+..|.+. +..++|..+.+..+... T Consensus 105 ~~d~-----~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~~-i~~~~p~~~~~v~d~~~~~~ 172 (474) T protein:vir:96 105 SDDD-----KSLKTIQEVLN---H---KWDDKLVDILTAASNKGIEWLQPYIDENGEFK-TFRVPAEQAIPIWTNKERDT 172 (474) T ss_pred cCch-----HHHHHHHHHHh---c---CHHHHHHHHHHHHHhcCeeEEEEEecCCCceE-EEEEcccceEEEEcCCCCCc Confidence 3211 11223333442 1 23344556678899999999999888888764 66778888777665321 Q ss_pred ---eEEEEeecc-c---ccccc---------------------------------------eEEEecCCCCCCcccccHH Q lcl|Aclame:pro 145 ---KPMYRVAGA-D---PLPQR---------------------------------------LVHHVRWMSINGYTGLSPV 178 (419) Q Consensus 145 ---~~~~~~~~~-~---~~~~~---------------------------------------~i~~~~~~~~~~~~G~s~~ 178 (419) .+.++.... . ...++ .|+++++ ...|.|.+ T Consensus 173 ~~~~vr~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n----n~~g~sd~ 248 (474) T protein:vir:96 173 LKAFIRYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKN----NPQEMSDL 248 (474) T ss_pred eEEEEEEEeecCceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEecc----CCCCCCcH Confidence 111111000 0 00000 1222222 23578888 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-CCceeeecC Q lcl|Aclame:pro 179 LLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-EGMKFKPLS 257 (419) Q Consensus 179 ~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-~g~~~~~l~ 257 (419) ......++....+.....+.+...+.|-.+++--. ++..++ +...+ ..++++.++ .|.+++.+. T Consensus 249 e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~~---~~~~~~----~~~~~--------~~~~~i~~~~~~~~~~~l~ 313 (474) T protein:vir:96 249 FMYKTIIDAMDKRLSDTQNTFDESTELIYILKGYE---GQDLDE----FMRNL--------KYYKAINVDGDGSGVDTIQ 313 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceeeeecCC---cccccc----hhhhh--------hcCceEEecCCCCceeEEe Confidence 88888888777777777777777777766654321 111111 11111 123456655 456666666 Q ss_pred cChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHH--------------HHHHHhhHHHHHHHHHHHh Q lcl|Aclame:pro 258 MTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ--------------FVIYTLLPWVKRHEQAKTR 323 (419) Q Consensus 258 ~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~--------------~~~~~i~P~~~~i~~~l~~ 323 (419) .......+.+..+...+.|+..-++|....... +++- +..+.+. ++...+...++.|.. T Consensus 314 ~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~--Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~---- 386 (474) T protein:vir:96 314 IEVPVQSSKEYLDMLRDYVIEFGQGVDFQQDKF-GNSP--SGIALKFMYSNLDLKANKLKNKTLTALQELLQYIID---- 386 (474) T ss_pred ecCChHHHHHHHHHHHHHHHHHhCCcccccccc-cccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Confidence 555556677888899999999999986543211 1121 1122211 222222222222211 Q ss_pred hccCh-hhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeee-ccccccccccccc Q lcl|Aclame:pro 324 DLLLP-SERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLS-PMNMVDASKPQPI 399 (419) Q Consensus 324 ~ll~~-~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~-~~n~~~~~~~~~~ 399 (419) ++.. .+.....+.| +.-...+..+.++. +..+|+++...+++++++-.-+ .-.++.- ...... ...+. T Consensus 387 -~~~~~~~~~~i~i~f--~~~~p~~~~e~~~~---~~~ag~iS~et~~~~~~~v~d~~~E~~ri~~E~~e~~~--~~~~~ 458 (474) T protein:vir:96 387 -FYKLNIKVQDVEITF--NFNVMVNELEQSQI---GVQSQYLSKETVVTNHPWVDDPVAELERIEQDNIDFNK--QLPPL 458 (474) T ss_pred -HhCCCcccceeeEEe--ccCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHh--ccccc Confidence 1111 1111222333 33345565555554 5568999999999987653211 1010000 000000 00000 Q ss_pred cCCCCCCccccccchh Q lcl|Aclame:pro 400 PMGKTEPTKAALDEIG 415 (419) Q Consensus 400 ~~~~~~~~~~~~~e~~ 415 (419) .....+...+...|++ T Consensus 459 ~~~~~~~~~d~~~e~~ 474 (474) T protein:vir:96 459 EGDANGRAQDNESETN 474 (474) T ss_pred ccccccccCCCcccCC Confidence 0111111122223444 No 215 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=95.68 E-value=0.00057 Score=38.37 Aligned_cols=309 Identities=14% Similarity=0.116 Sum_probs=139.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCcccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCcceeeccc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKPATDH 80 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~~~~ 80 (419) |+.+...++.. -.|.- -..+....+.....+.+- ..-|.+.+-+|+.||.-- -.|+... T Consensus 1 ~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~--------- 59 (320) T protein:vir:97 1 MGIFNFKKRET--LTPEL---KESIIRQVTIEDESPFTG------TTDFNVRNEVAESIATYL-GAYKTSA--------- 59 (320) T ss_pred CCccccccccc--cChhH---HhhhhheeeeccCCCccc------ccccchhhHHHHHHHHHh-hhhcccc--------- Confidence 88554332211 11111 111111111111111111 111222233333333210 0011110 Q ss_pred hHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccceeEEEEeecccccccce Q lcl|Aclame:pro 81 PLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPMYRVAGADPLPQRL 160 (419) Q Consensus 81 ~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 160 (419) ....+|. .|| .|++.++.+.+..-..|++.... .|+.. -+..++...+. +..+.. .+.+..-+ T Consensus 60 ~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~---~~~~~~--~D~FN~~V 122 (320) T protein:vir:97 60 KRLSLLT--NNP-----SFLRRLVKHALHNKTTYVYKSPT-YGWLI----TDSMTIEGLRA---RLTFTL--PDPFNSAV 122 (320) T ss_pred ceeeeee--CCH-----HHHHHHHHHhhcccceEEeeCCc-cceee----ecceeeeeeee---eEEEec--CcccceeE Confidence 1113343 333 48999999999999999987433 34322 12222221111 111111 11111111 Q ss_pred EEEecCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 161 VHHVRWMS----INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFG 236 (419) Q Consensus 161 i~~~~~~~----~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (419) -+.++... .+..+|.-+-+. -.+...+.....+-+.|.+.....++.+-+.+ -++-.++....+.++.. T Consensus 123 ~mtvpfyD~~ILdnpl~gv~tqe~----gkM~g~a~~~v~kkL~~~~~IKafi~Tdid~G---Lee~kD~~~~kIk~mq~ 195 (320) T protein:vir:97 123 TMTVPFYDVGIIDSPLVEVDTEEA----NKMLEAAYSAVMKKLHNTGAIKAFISSDIDVG---LEKMKEESDSKIKAMLA 195 (320) T ss_pred EEEeeeechhhhhhhhcccChHHh----hHHHHHHhhhhhhhccccceeEEEEecccchh---HHHHHHHHHHHHHHHHH Confidence 11111111 134556554422 22334445556666778889999998875432 13344444444443333 Q ss_pred cccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 237 GSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKR 316 (419) Q Consensus 237 g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~ 316 (419) -+.-=.++-+++.|-+++++.....-+. ..-....++..+.-|+||..++- ++..+.+..+|+...++|++.+ T Consensus 196 ~A~~~nG~T~i~~~dDI~Qi~pDYS~sn-~~D~~l~~t~alS~y~m~~~IL~------GsAte~~~Iaf~~~~V~PLL~Q 268 (320) T protein:vir:97 196 TAELLSGYTYIQRGDDVTQMMPDYTTSN-VTDFAAMRTFAASQLSVSDKILD------GSATDGEKVAVMFRFVEPILEQ 268 (320) T ss_pred HHHHhcCcccccCCcceeeecccccccc-hhHHHHHHHHHHhhcCCchhhcc------ccCCcceeeehhhHhHHHHHHH Confidence 3321123677889999999876554433 22244667788899999999882 4455788899999999999999 Q ss_pred H---HHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC----Ccceeee Q lcl|Aclame:pro 317 H---EQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK----GGDIYLS 386 (419) Q Consensus 317 i---~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~----ggD~~~~ 386 (419) + |.++.+++-.+ |-+ .+.. -.|.+..|.+-. -|.+..| |||+--+ T Consensus 269 ~~~~Ek~Lvy~m~~E---------~FV-s~mt--------------TGG~l~S~~~~~-~~~~~~~~~~~~~~~~~~ 320 (320) T protein:vir:97 269 FREYEPSLIYAMRDE---------FFV-SFMT--------------TGGMLNSNRVDG-WGKEKAPNESKGGDVGDV 320 (320) T ss_pred hhhcCcceeeeeccc---------eee-eeee--------------cCceeecccccc-cccccCCccccCCcccCC Confidence 7 44443332111 101 0100 044444443221 1222222 3332211 No 216 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=95.50 E-value=0.0019 Score=35.45 Aligned_cols=364 Identities=9% Similarity=-0.041 Sum_probs=154.0 Q ss_pred CCccchhcccccccccccchHH---HHhhcCCC-------c----ccccccCHHHHhccHHHHHHHHHHHHhhccCCeeE Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWV---SALLGSAR-------S----EAGQVVTPASALSLTVLQNCVTLLAESIAQLPVEL 66 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~----~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~ 66 (419) +...+.+.+-...... ....+ .....+.. . .......+..-+.++.....++..+..+-+-|+++ T Consensus 25 ~~~~~~i~~~i~~~~~-~~~~~~~~~~yY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~ 103 (468) T protein:vir:96 25 ETQEEMILRLITKHKE-NVEDITVGERYYNHQPDVLFNAPKRNVKGEIDPFKPDWRMYTNYHQNLVDQKVAYAVANPVTY 103 (468) T ss_pred cCcHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCccccccccccccccccccccccccccchHHHHHHHHHhhhccCCcee Confidence 1111100000000000 00000 01111000 0 00000111112345667778888888887888776 Q ss_pred eeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccc--e Q lcl|Aclame:pro 67 YERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD--L 144 (419) Q Consensus 67 ~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~--~ 144 (419) ...+++ ....+..++. | +..+....+..+.+.+|.+|+++..+..|.+ .+..++|..+-+..+.. + T Consensus 104 ~~~d~~-----~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~~~~~~~ 171 (468) T protein:vir:96 104 GTEDEK-----SLKTIQEVLN---H---KWDDKLVDILTAASNKGVEWIQPYVDEQGEF-KTFRVPAEQAIPIWTNKERD 171 (468) T ss_pred ccCChH-----HHHHHHHHHh---c---CHHHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCC Confidence 432111 1223334442 2 3345566688899999999999888887765 35566777766554321 0 Q ss_pred e----EEEEee-ccc---ccccce---------------------------------------EEEecCCCCCCcccccH Q lcl|Aclame:pro 145 K----PMYRVA-GAD---PLPQRL---------------------------------------VHHVRWMSINGYTGLSP 177 (419) Q Consensus 145 ~----~~~~~~-~~~---~~~~~~---------------------------------------i~~~~~~~~~~~~G~s~ 177 (419) . +.++.. +.. ...+.. +++++ +...|.|. T Consensus 172 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvv~~~----n~~~g~sd 247 (468) T protein:vir:96 172 ELKAFIRLYELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNRVPFIPFK----NNPQEVSD 247 (468) T ss_pred ceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCcccEEEec----CCCCCCCc Confidence 0 111100 000 000000 11111 12357788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC--CCceeee Q lcl|Aclame:pro 178 VLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ--EGMKFKP 255 (419) Q Consensus 178 ~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~--~g~~~~~ 255 (419) +......++....+.....+.+...+.|-.+++--. .+..++.... + . .++++.++ ++.+++. T Consensus 248 ~e~v~~liDa~d~~~S~~~~~~~~~~~p~lv~~g~~---~~~~~~~~~~----~----~----~~~~i~~~~d~~~~~~~ 312 (468) T protein:vir:96 248 LFMYKTIIDAMDKRLSDTQNTFDEATELIYVLKGYE---GEDLEEFMYN----L----K----YYKAINVDGDGSGGVDT 312 (468) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCC---ccccchhhhh----h----h----cCceEEecCCCCCcceE Confidence 877777777777666666667777777766654221 1111111111 1 1 12344443 3334444 Q ss_pred cCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccccc--HH----------HHHHHHHHHHhhHHHHHHHHHHHh Q lcl|Aclame:pro 256 LSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSN--IE----------HQSLQFVIYTLLPWVKRHEQAKTR 323 (419) Q Consensus 256 l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn--~e----------~~~~~~~~~~i~P~~~~i~~~l~~ 323 (419) +........+....+...+.|...-++|..... ..+++-|. .+ ......+...+.-.++.|.. T Consensus 313 l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~-~~~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~---- 387 (468) T protein:vir:96 313 IQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQD-KFGNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIID---- 387 (468) T ss_pred EeecCChHHHHHHHHHHHHHHHHHhCccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---- Confidence 444444555677788888999999998754321 11112111 11 11111222222222222211 Q ss_pred hccChh-hhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Ccceeeecccccccccccccc Q lcl|Aclame:pro 324 DLLLPS-ERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIYLSPMNMVDASKPQPIP 400 (419) Q Consensus 324 ~ll~~~-~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~ 400 (419) ++... +.....+.| +.-...|..+.++. +.++|+++.-.+++.+++-..+ .-++.-. .........+ T Consensus 388 -~~g~~~d~~~i~i~f--~~~~p~d~~e~a~~---~~~~g~iS~et~i~~l~~v~D~~~E~~ri~~----E~~~~~~~~~ 457 (468) T protein:vir:96 388 -FYKLSIKVQDVEITF--NFNVMVNELEQSQI---GVNSQYLSKETVVTNHPWVDDPVAEMERIDQ----EELALPSIEE 457 (468) T ss_pred -HhCCCcccceeeEEe--cCCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHH----HHHHHHHHhh Confidence 11111 111223333 33344555555554 4567999998888887542211 1111100 0000000001 Q ss_pred CCCCCCccccccchh Q lcl|Aclame:pro 401 MGKTEPTKAALDEIG 415 (419) Q Consensus 401 ~~~~~~~~~~~~e~~ 415 (419) .-.+++.+.+ . T Consensus 458 ~~~~~~~~~~----~ 468 (468) T protein:vir:96 458 GLNGKENNEP----T 468 (468) T ss_pred ccCCCCCCCC----C Confidence 1111111111 1 No 217 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=95.37 E-value=0.0022 Score=35.16 Aligned_cols=372 Identities=9% Similarity=-0.047 Sum_probs=158.6 Q ss_pred CC--ccchhcccccccccccchH---HHHhhcCC-----------------Ccc--cccccCHHHHhccHHHHHHHHHHH Q lcl|Aclame:pro 1 MF--FSRQLLSNLGQTQPGSGGW---VSALLGSA-----------------RSE--AGQVVTPASALSLTVLQNCVTLLA 56 (419) Q Consensus 1 M~--f~~~~~~~~~~~~~~~~~~---~~~~~~~~-----------------~~~--~~~~~~~~~~~~~~~v~~~i~~ia 56 (419) |= +........-..-...... +.....+- ... ......+..-+.++....+++..+ T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~ 80 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAKAEDNAFRNADNRISHNWHQLLLDQKK 80 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhcccccccccccccccccceeccchhHHHHHhhh Confidence 11 0000000000000000000 00000000 000 000000111234566777888888 Q ss_pred HhhccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC-CCceEEEEEecCce Q lcl|Aclame:pro 57 ESIAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ-DGVIQGLYPLDNEA 135 (419) Q Consensus 57 ~~ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~-~G~~~~l~~~~~~~ 135 (419) +.+-+-|+.+...++. ....+...+. | ........+...++.+|.||.++.++. .|.+ .+..++|.. T Consensus 81 ~yl~G~p~~~~~~~~~-----~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~~-~~~~~~p~~ 148 (471) T protein:vir:10 81 AYALTYPPTFDVDDKK-----VNDMIVDVLG---D---DYERISKQLCVNAGNAGIAWLHVWKDASDNSF-RYACVDSKE 148 (471) T ss_pred hhhcccCceeccCChH-----HHHHHHHHHh---c---CHHHHHHHHHHHHhhCCeEEEEEEeeCCCCee-EEEEEcccc Confidence 8888888876432111 0111222221 2 233455667788999999999998874 4654 466677777 Q ss_pred eEEEEccce------eEEEEee----c-cc-----ccccceEEEec--------------------------------CC Q lcl|Aclame:pro 136 VTVMKGPDL------KPMYRVA----G-AD-----PLPQRLVHHVR--------------------------------WM 167 (419) Q Consensus 136 v~~~~~~~~------~~~~~~~----~-~~-----~~~~~~i~~~~--------------------------------~~ 167 (419) +-+..+... .+.++.. + .. ...++.+.+.. .+ T Consensus 149 ~~~i~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (471) T protein:vir:10 149 VIPIYSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKH 228 (471) T ss_pred eEEEEcCCCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccC Confidence 766655421 1111110 0 00 00111111110 00 Q ss_pred CC---------CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccc Q lcl|Aclame:pro 168 SI---------NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGS 238 (419) Q Consensus 168 ~~---------~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 238 (419) ++ +...|.|.+......++....+.....+.+...+.|-.+++-. ..+..++....++ T Consensus 229 ~~g~iPvv~~~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv~~g~---~~~~~~~~~~~~~---------- 295 (471) T protein:vir:10 229 DFGLVPFIPFKNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVIFVLTNY---GGQDKQEFLEDLK---------- 295 (471) T ss_pred CCCceeEEEeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCceeeeecC---CccccchhHHHhh---------- Confidence 11 1234777787777777777766666666666666665554432 1111222222111 Q ss_pred cccCcceecC-----CCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHH----------HH Q lcl|Aclame:pro 239 GNAKKVALLQ-----EGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQ----------SL 303 (419) Q Consensus 239 ~n~g~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~----------~~ 303 (419) .++++.++ .+.++.-+........+....+...+.|...-++|..-....++.++..++.. .. T Consensus 296 --~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~gn~Sg~Alk~~~~~l~~k~~~~~ 373 (471) T protein:vir:10 296 --RYKMIKMDNDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETDKLGNSSGVALKFLYSLLELKAGNME 373 (471) T ss_pred --cCCeEEecCCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCcccccCccHHHHHHHHHHHHHHHHHHH Confidence 11223332 22233333433334456777888889999999988643322222221111111 11 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cc Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GG 381 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--gg 381 (419) ..+...+.-.++.+.. ++...+. ..+.+.+......|..+.++.+.++ +|+++.--++++++.-.-+ .. T Consensus 374 ~~~~~~l~~~~~li~~-----~~~~~d~--~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~~p~v~D~~~E~ 444 (471) T protein:vir:10 374 TQFRSGYATLVKMILK-----HLGLSDK--LKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVAKSNPIVEDWQDEL 444 (471) T ss_pred HHHHHHHHHHHHHHHH-----HhccCCC--ceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHH Confidence 1122222222222211 1222222 2234444556778899999988886 5789998888887552211 00 Q ss_pred ceeeeccccccccccccccCCCCCCccccccchh Q lcl|Aclame:pro 382 DIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIG 415 (419) Q Consensus 382 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~ 415 (419) +++ ..+.....+......+..+++|.+ T Consensus 445 eri-------~~E~~~~~~~~~~~~~~~~~~e~~ 471 (471) T protein:vir:10 445 RLQ-------KAEQEGRSEKLYDMEEVEHESEVE 471 (471) T ss_pred HHH-------HHHHHHHHhcccccCCCCCccccC Confidence 000 000000000001111112222333 No 218 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=94.24 E-value=0.005 Score=33.21 Aligned_cols=410 Identities=11% Similarity=0.070 Sum_probs=165.4 Q ss_pred CCccchhcc--c---ccccccccchHHHHh-----hcCCCccccccc-------CHHHHhccHHHHHHHHHHHHhhccC- Q lcl|Aclame:pro 1 MFFSRQLLS--N---LGQTQPGSGGWVSAL-----LGSARSEAGQVV-------TPASALSLTVLQNCVTLLAESIAQL- 62 (419) Q Consensus 1 M~f~~~~~~--~---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------~~~~~~~~~~v~~~i~~ia~~ia~~- 62 (419) |+|+-.-.. . .+...|...+....+ .+......+..- .....+.+|.|..||+.|.+.+.-. T Consensus 5 fgf~~~~~~~~~~~~~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d 84 (558) T protein:vir:10 5 FGFSIEETQKKSTSIISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMALHPEADGAIEDVVNEAIVSD 84 (558) T ss_pred hcchhhhhhhhccCCccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHhhccchhhHHHHhhcceeEec Confidence 666532111 1 111122222211111 111111001100 1234578999999999999876522 Q ss_pred ----CeeEeeecCCcc---eeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC---CceEEEEEec Q lcl|Aclame:pro 63 ----PVELYERSGDDR---KPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD---GVIQGLYPLD 132 (419) Q Consensus 63 ----~~~~~~~~~~~~---~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~---G~~~~l~~~~ 132 (419) |+.+--.+-+.. .....+.+.++|+ --+....+++++ ..|...|..|..++-+.. .-+.+|..++ T Consensus 85 ~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~-ll~F~~~~~e~f----R~WYVDgRiyfHKiid~k~pk~GI~ELr~lD 159 (558) T protein:vir:10 85 LYDSPVEVELSNLNASNTLKKKIREEFRYIKE-MMDFDKKSHEIF----RNWYVDGRVFYLKVIDTKNPQEGIQDLRYID 159 (558) T ss_pred CCCceEEEEecccCcchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhheeeeEEEEEEEEeCCCccccceeeeeeC Confidence 222211111110 0011122223332 122344555544 456677999988755422 2388999999 Q ss_pred CceeEEEEcc----------------------ceeEEEEeeccc-----------------ccccceEEEecCC--CCCC Q lcl|Aclame:pro 133 NEAVTVMKGP----------------------DLKPMYRVAGAD-----------------PLPQRLVHHVRWM--SING 171 (419) Q Consensus 133 ~~~v~~~~~~----------------------~~~~~~~~~~~~-----------------~~~~~~i~~~~~~--~~~~ 171 (419) |..++.++.- .++..|+..+.. ..+.+-|++.... +.++ T Consensus 160 Pr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI~~dAI~y~hSGL~d~~~ 239 (558) T protein:vir:10 160 PLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKIAKDSITMCTSGLVDRNK 239 (558) T ss_pred cccceeeeeeccccccccceeeeecccceeeccceeEeeeecCCcccccccceeecCCCceeechhheeeecccceecCC Confidence 9999655431 011122221111 1122333333321 1222 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc------ Q lcl|Aclame:pro 172 YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV------ 244 (419) Q Consensus 172 ~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~------ 244 (419) -.=+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ T Consensus 240 ~~i~syLhkAIKp~NQLkmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~ 319 (558) T protein:vir:10 240 NRVLSYLHKAIKALNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEVRDDRKF 319 (558) T ss_pred CeeeecchHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchh Confidence 2334667778887777777777666666667777777777643 333333444444444444332211122222 Q ss_pred e-ec----------CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHH---HHHHH-- Q lcl|Aclame:pro 245 A-LL----------QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSL---QFVIY-- 308 (419) Q Consensus 245 ~-vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~---~~~~~-- 308 (419) + .+ ..|.+++.|.... .+.-++-.++..+.+..+++||.+-+...++-+.....+..+ .|... T Consensus 320 msMlEDyWLpRReGgrgTEItTLpGgq-nLgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~ 398 (558) T protein:vir:10 320 MSMMEDFWLPRREGGRGTEITTLPGGQ-NLGELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKFAKFVG 398 (558) T ss_pred hhhHhhhcccccCCCCccceeeccccC-CcchHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHH Confidence 1 11 1456777665332 222233455888999999999999886544433322222221 12111 Q ss_pred Hhh-HHHHHHHHHHHhhccC-----hhhhh----hhhhhhhhhhhhhc-----cHHHHHHHHHHHH--hCCCcCHHHHHH Q lcl|Aclame:pro 309 TLL-PWVKRHEQAKTRDLLL-----PSERK----QYFIEYNLAGLLRG-----DQSSRYAAYAVGR--QWGWLSINDIRR 371 (419) Q Consensus 309 ~i~-P~~~~i~~~l~~~ll~-----~~~~~----~~~~~fd~~~~~~~-----d~~~~~~~~~~~~--~~g~~T~NE~R~ 371 (419) .|+ -+...+.+-|.++|+. +.+.. ..++.|..|..... -+..|..+++.+- -+..++.+=+|+ T Consensus 399 RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k 478 (558) T protein:vir:10 399 RLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYSTEYVRK 478 (558) T ss_pred HHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHH Confidence 111 1222233333344332 22322 12233333321110 0122333332221 111223333321 Q ss_pred -HhCCC------------------CC--CC-------------cceeeeccccccccccccccCCCCCCcccc-ccchhc Q lcl|Aclame:pro 372 -LENMP------------------PV--KG-------------GDIYLSPMNMVDASKPQPIPMGKTEPTKAA-LDEIGR 416 (419) Q Consensus 372 -~lGl~------------------p~--~g-------------gD~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 416 (419) .|.+. .. |. ||--.......|.+. .......++.+. +.+.+| T Consensus 479 ~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 555 (558) T protein:vir:10 479 RVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPAMEGMGEQPVDP---DLEAQAQAVDAQYSKDTKK 555 (558) T ss_pred HHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhccccCccCCchhccCCCCCccc---ccccchhhhhhhhhhhhhh Confidence 12221 11 11 110010111111000 000011111110 112222 Q ss_pred ccC Q lcl|Aclame:pro 417 ILS 419 (419) Q Consensus 417 ~~~ 419 (419) +-- T Consensus 556 ~~~ 558 (558) T protein:vir:10 556 AEL 558 (558) T ss_pred hcC Confidence 111 No 219 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=93.73 E-value=0.0066 Score=32.55 Aligned_cols=387 Identities=9% Similarity=-0.023 Sum_probs=165.1 Q ss_pred CCc--cchhcccccccccccchHHHHhhcCCC-----cccccccCHHHHhccHHHHHHHHHHHHhhccCCeeEeeecCCc Q lcl|Aclame:pro 1 MFF--SRQLLSNLGQTQPGSGGWVSALLGSAR-----SEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDD 73 (419) Q Consensus 1 M~f--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~ 73 (419) |-+ .+++.+......+.- .-+.....+.. ...... -...-+.++....+|+..+..+-+-|+.+...++. T Consensus 16 ~~~~~i~~~i~~~~~~~~~~-~~l~~Yy~g~~~i~~~~~~~~~-~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~~~~~- 92 (499) T protein:vir:10 16 PNIEAINYAIRELQNRKKRL-DKLSDYYNGKQEIEKHEFDNAT-VEAANVMVNHAKYITDMNVGFMTGNPVKYVAEKGK- 92 (499) T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHhccccchhcCCcCcCC-CCcceeecchHHHHHHHHhhhhcccCceeecCChh- Confidence 110 000100000000000 00111111100 000000 01111234566778888888888888775432211 Q ss_pred ceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce----------------EEEEEecCceeE Q lcl|Aclame:pro 74 RKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI----------------QGLYPLDNEAVT 137 (419) Q Consensus 74 ~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~----------------~~l~~~~~~~v~ 137 (419) ..+.+..++.. | ....+...+..+.+.+|.+|.++..+..|.+ ..+..++|..+- T Consensus 93 ----~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~ 163 (499) T protein:vir:10 93 ----NIDDILEVFNQ--I---DIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATV 163 (499) T ss_pred ----HHHHHHHHHhh--c---CHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEcccceE Confidence 12234444431 1 3345677788899999999999887776643 234555666554 Q ss_pred EEEccce------eEEEEe-ec---c------cccccceEEEec-----------------CCCC---------CCcccc Q lcl|Aclame:pro 138 VMKGPDL------KPMYRV-AG---A------DPLPQRLVHHVR-----------------WMSI---------NGYTGL 175 (419) Q Consensus 138 ~~~~~~~------~~~~~~-~~---~------~~~~~~~i~~~~-----------------~~~~---------~~~~G~ 175 (419) +..+... .+.++. .. . ....++.|++.. .+++ +...|. T Consensus 164 ~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~ 243 (499) T protein:vir:10 164 VVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFGAVPIIEFRNNEERQ 243 (499) T ss_pred EEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCCccceEEecCCCCCC Confidence 4443221 011110 00 0 000111111110 0110 123477 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCccee--cCCCcee Q lcl|Aclame:pro 176 SPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVAL--LQEGMKF 253 (419) Q Consensus 176 s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~v--l~~g~~~ 253 (419) |.+..+...++....+.....+.+...+.|-.+++-.. .. .++.....++ .+.+.. .++|.++ T Consensus 244 ~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~lv~~G~~--~~-~~~~~~~~~~------------~~~~~~~~~~~~~d~ 308 (499) T protein:vir:10 244 GDFEQLISLIDAYNLLQTDRISDKEAFVDALLVTFGFG--LG-DDKDDIQRLK------------RGAIEAPPREEGADI 308 (499) T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHhcCceeeeecCc--cc-cccchhhhhh------------hcceeccCCCCCCcc Confidence 77887777777777666666667777777777765321 11 1111111111 122333 3456666 Q ss_pred eecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccc-ccCcccccH----------HHHHHHHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 254 KPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNE-LERATFSNI----------EHQSLQFVIYTLLPWVKRHEQAKT 322 (419) Q Consensus 254 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~-~~~~~~sn~----------e~~~~~~~~~~i~P~~~~i~~~l~ 322 (419) +.+........+.+..+...+.|...-++|..-... .+..++... -......+...+.-.++.+..-++ T Consensus 309 ~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~ 388 (499) T protein:vir:10 309 EWLTKSFDETQVNLLSQSIENDIHKISYVPNMNDEKFMGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVN 388 (499) T ss_pred eEEeccCCHHHHHHHHHHHHHHHHHHhCcccCCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 666655555556777888888888888887432211 111111111 111222333333333333322222 Q ss_pred hhccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC--Cccee--------------ee Q lcl|Aclame:pro 323 RDLLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK--GGDIY--------------LS 386 (419) Q Consensus 323 ~~ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~--ggD~~--------------~~ 386 (419) ..- ...+.. .+.+.+..-...+..+.++.+.++ .|+++.--+++++++-.-+ ..+++ +. T Consensus 389 ~~~-~~~d~~--~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~ 463 (499) T protein:vir:10 389 IKG-ANDDAS--GCKISLVANIPSNLSDVVNNVKNA--DGIIPRKYTYSWLPDVDNPQDVIDEMNQQDAETIKKNQEALR 463 (499) T ss_pred ccC-Cccccc--cceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhc Confidence 110 001111 233333444567889999999887 6889998888887663211 11110 00 Q ss_pred ccccccccccccccCCC--CCCccccccchhcccC Q lcl|Aclame:pro 387 PMNMVDASKPQPIPMGK--TEPTKAALDEIGRILS 419 (419) Q Consensus 387 ~~n~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~ 419 (419) ..+..+.+.....+..+ .+++++..+..|+=-| T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499) T protein:vir:10 464 GQDPDRLELEDKQDDSSENDKEAGSNHNQSHRTRA 498 (499) T ss_pred cCCCCCCCCCCCCcccCCCCCCCccccccCCCCCC Confidence 01001110000000000 0011111111122122 No 220 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=88.44 E-value=0.032 Score=28.76 Aligned_cols=395 Identities=10% Similarity=0.002 Sum_probs=169.0 Q ss_pred CCccchhcc---------c-ccccccccchHH------------HHhhcCCCcccccc------c-CHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLS---------N-LGQTQPGSGGWV------------SALLGSARSEAGQV------V-TPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~---------~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~------~-~~~~~~~~~~v~~~ 51 (419) ++||.+... + .+...|...+.- ..+++....-.+.. | +....+.+|.|..| T Consensus 7 f~f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~~pEvd~A 86 (516) T protein:vir:10 7 FKFWDRVDQNEYDERLKQGHESIATPKKDDGATEIEAREGESSYNALMQQFFGIDNNISGTKDLINTYRQLTNNPEVERA 86 (516) T ss_pred cccccchhhHHHHhhhcCCCCcccCCCCccCceeeecCcccccccceeeeeecccCccccHHHHHHHHHHhhhccchhHH Confidence 446532111 1 111112211100 11111111111100 1 12445679999999 Q ss_pred HHHHHHhhccC-----CeeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec-CC Q lcl|Aclame:pro 52 VTLLAESIAQL-----PVELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD-QD 122 (419) Q Consensus 52 i~~ia~~ia~~-----~~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~-~~ 122 (419) |+.|.+.+.-. |+.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+ .. T Consensus 87 v~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fhKiid~~k 161 (516) T protein:vir:10 87 VANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICR-LLDASRKLDTLF----RRWYIDSRIFFHKIMPNPK 161 (516) T ss_pred HHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-HhccchhhhHHH----HhhhhcceEEEEEEecCcc Confidence 99999876422 2222110000 000001112222332 122344555544 4566779998885434 33 Q ss_pred CceEEEEEecCceeEEEEcc-----------cee--EEEEee-------ccc--------ccccceEEEecCC--CCCCc Q lcl|Aclame:pro 123 GVIQGLYPLDNEAVTVMKGP-----------DLK--PMYRVA-------GAD--------PLPQRLVHHVRWM--SINGY 172 (419) Q Consensus 123 G~~~~l~~~~~~~v~~~~~~-----------~~~--~~~~~~-------~~~--------~~~~~~i~~~~~~--~~~~~ 172 (419) .-+.+|..++|..++.++.- .+. +..|.. +.. ..+.+-|++.+.. +.++- T Consensus 162 ~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~daI~y~hSGl~d~~~~ 241 (516) T protein:vir:10 162 EGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLFEPNTRIKIPRSAIVYAHSGLQDCSDR 241 (516) T ss_pred cceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccceeccccccCCCCceecchhheeeeecCcccCCCC Confidence 44899999999999865432 111 111111 111 1233344443322 22221 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc------e Q lcl|Aclame:pro 173 TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV------A 245 (419) Q Consensus 173 ~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~------~ 245 (419) .=+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=..+.|.+ + T Consensus 242 ~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev~ddrk~m 321 (516) T protein:vir:10 242 GIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNL 321 (516) T ss_pred ceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhh Confidence 225667778877777777777666666667777777777643 333333444455555444433222222322 1 Q ss_pred e-c----------CCCceeeecCcC--hhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc--ccHHHHHHH---HHH Q lcl|Aclame:pro 246 L-L----------QEGMKFKPLSMT--NVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNIEHQSLQ---FVI 307 (419) Q Consensus 246 v-l----------~~g~~~~~l~~~--~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~--sn~e~~~~~---~~~ 307 (419) - + ..|.+++.|... .-+|+ -.++..+.+..+++||.+-+...++.+. ....+..+. |.. T Consensus 322 sMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEiKF~K 398 (516) T protein:vir:10 322 SMTEDYWLMRRDGKSVTEVTSLPGAQTMGEMD---DVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDELDFRK 398 (516) T ss_pred hhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHH Confidence 1 1 145677766532 33444 4558889999999999998865444321 222222221 222 Q ss_pred H--HhhH-HHHHHHHHHHhhccC-----hhhhhh--hhhhhh--hhhhhhc-----cHHHHHHHHHHH--HhCCCcCHHH Q lcl|Aclame:pro 308 Y--TLLP-WVKRHEQAKTRDLLL-----PSERKQ--YFIEYN--LAGLLRG-----DQSSRYAAYAVG--RQWGWLSIND 368 (419) Q Consensus 308 ~--~i~P-~~~~i~~~l~~~ll~-----~~~~~~--~~~~fd--~~~~~~~-----d~~~~~~~~~~~--~~~g~~T~NE 368 (419) . .|+- +..-+.+.|.++|+. +.+... ..+.|+ .|..... -+..|..+++.+ +-+..++.+= T Consensus 399 FI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~~y 478 (516) T protein:vir:10 399 FIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYVSHDY 478 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHH Confidence 1 1211 222344445554433 333322 233333 3322110 012333333332 1234566666 Q ss_pred HHH-HhCCCCCC--CcceeeeccccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 369 IRR-LENMPPVK--GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 369 ~R~-~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) +|+ .|.+...+ .-++. +.... +.+--++++.|.+= T Consensus 479 i~k~ILr~tDeei~~~~k~--------I~~E~-----~~~~~~~p~~e~~f 516 (516) T protein:vir:10 479 VMKNILQMTDEQIAQEEKQ--------IEKEA-----NVKRFQNPENEDDF 516 (516) T ss_pred HHHHHhcCCHhHHHHHHHH--------HHHhh-----hCCCCCCCCccccC Confidence 654 34444321 00000 00000 00000111111111 No 221 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=88.44 E-value=0.032 Score=28.76 Aligned_cols=390 Identities=10% Similarity=-0.019 Sum_probs=151.5 Q ss_pred CCcc------------chhcccccccccccchHHHHhhcCCCcccccccC-----HHHHhccHHHHHHHHHHHHhhccCC Q lcl|Aclame:pro 1 MFFS------------RQLLSNLGQTQPGSGGWVSALLGSARSEAGQVVT-----PASALSLTVLQNCVTLLAESIAQLP 63 (419) Q Consensus 1 M~f~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~i~~ia~~ia~~~ 63 (419) ++++ +...+......+.- ..+...+-+....-..... ...-+.++....+|+..+..+-+-| T Consensus 6 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~-~~~~~yy~g~~~i~~~~~~~~~~~~~~ki~~n~~~~iv~~~~~~l~g~~ 84 (489) T protein:vir:99 6 FEAIDYESKLWIDQLKNYISRFKAEQLERL-KELKRYYLGDNNIKYRPAKTDKYAADNRIASDFAKYITVFEQGYMLGVP 84 (489) T ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCccccccccccccCCcceeecchHHHHHHHHhhhhccCC Confidence 1100 00000000000000 0011111111000000000 0111345677788888888887778 Q ss_pred eeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEee----cCCCceEEEEEecCceeEEE Q lcl|Aclame:pro 64 VELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDR----DQDGVIQGLYPLDNEAVTVM 139 (419) Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~----~~~G~~~~l~~~~~~~v~~~ 139 (419) +++...++. ....+..++. . | ....+...+..+++.+|.+|.++.. +..|. ..+..++|..+.+. T Consensus 85 ~~~~~~d~~-----~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~~-~~i~~~~p~~~~~v 153 (489) T protein:vir:99 85 VEYKNENKD-----LQAAIDLMSV-R-N---NEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKTE-VKLYQLPAEQTFVI 153 (489) T ss_pred ceeecCChh-----HHHHHHHHHh-h-c---ChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCcc-eEEEEEcccceEEE Confidence 775432111 1123333342 2 2 3335667788889999999987753 23333 34556666666655 Q ss_pred Eccce--eE----EEE-eec---c-----cccccce----------------------------EEEecCCCCCCccccc Q lcl|Aclame:pro 140 KGPDL--KP----MYR-VAG---A-----DPLPQRL----------------------------VHHVRWMSINGYTGLS 176 (419) Q Consensus 140 ~~~~~--~~----~~~-~~~---~-----~~~~~~~----------------------------i~~~~~~~~~~~~G~s 176 (419) .+... .. .++ ... . ....++. |+++++ ...|.| T Consensus 154 ~dd~~~~~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n----~~~~~s 229 (489) T protein:vir:99 154 YDDTYQRNSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYAN----NEERTG 229 (489) T ss_pred EcCCCCCceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeec----CCCCCC Confidence 54221 00 000 000 0 0000111 222222 224667 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHH--hccccccCcceecCCC---- Q lcl|Aclame:pro 177 PVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAK--FGGSGNAKKVALLQEG---- 250 (419) Q Consensus 177 ~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~n~g~~~vl~~g---- 250 (419) .+......++....+.....+.....+.+-.+++--.. ......+..+..+...... .......++++.++.+ T Consensus 230 ~~~~v~~liDa~d~~~s~~~~~~~~~~~~~l~i~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (489) T protein:vir:99 230 AYESVLDNIDAYDLSQSELANFQQDSVNALLVIAGNAY-TGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPN 308 (489) T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc-ccccchhhhhhcccccccccccccccccceeeeeccccCcc Confidence 66666666665555444444444444444444322111 0100011111111000000 0011122334444332 Q ss_pred ---ceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHc-ccccCcccccHH----------HHHHHHHHHHhhHHHHH Q lcl|Aclame:pro 251 ---MKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMV-NELERATFSNIE----------HQSLQFVIYTLLPWVKR 316 (419) Q Consensus 251 ---~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~-g~~~~~~~sn~e----------~~~~~~~~~~i~P~~~~ 316 (419) .++..+.....+..+....+...+.|...-++|.... +..++.++..++ +.....+...+...++. T Consensus 309 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~l 388 (489) T protein:vir:99 309 GVKPQAYFLKKEYDTAGSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRL 388 (489) T ss_pred ccccceeeeeecCChHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2333333333344456667788899999999985322 222222211111 11122333334343333 Q ss_pred HHHHHHhhccChhhhh--hhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCC-CCC---Ccceeee---- Q lcl|Aclame:pro 317 HEQAKTRDLLLPSERK--QYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMP-PVK---GGDIYLS---- 386 (419) Q Consensus 317 i~~~l~~~ll~~~~~~--~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~-p~~---ggD~~~~---- 386 (419) +...+... -.+.... ...+.+.++.-...|..+.++.+.++. |+++.-.+.++++.= ..+ ..+++-- T Consensus 389 i~~~~~~~-~~~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--giis~et~~~~l~~v~~~d~~~E~~ri~~E~~~ 465 (489) T protein:vir:99 389 AANIWAIK-GNEATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GIVSDQTIFEILNTVTGVDAEAELKRLKEEADK 465 (489) T ss_pred HHHHHhhc-CCccccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhcCCCCchhHHHHHHHHHHHHHH Confidence 32222211 1111100 112333344556678888899888874 789998888887541 111 1111100 Q ss_pred ccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 387 PMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 387 ~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) ..........+ ...++.++ ..++. T Consensus 466 ~~~~~~~~~~~-~~~~~~~~---~~~~p 489 (489) T protein:vir:99 466 KQSLPEPRLVG-DASGQEEP---TAEKP 489 (489) T ss_pred HhccccccccC-CCCCCcCC---CCCCC Confidence 00000000000 00011111 11111 No 222 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=85.67 E-value=0.051 Score=27.67 Aligned_cols=407 Identities=11% Similarity=0.069 Sum_probs=171.5 Q ss_pred CCcc--chhccc--ccccccccch----HHH-HhhcCCCccccccc-------CHHHHhccHHHHHHHHHHHHhhccC-- Q lcl|Aclame:pro 1 MFFS--RQLLSN--LGQTQPGSGG----WVS-ALLGSARSEAGQVV-------TPASALSLTVLQNCVTLLAESIAQL-- 62 (419) Q Consensus 1 M~f~--~~~~~~--~~~~~~~~~~----~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~v~~~i~~ia~~ia~~-- 62 (419) .||. +.-+.. .+...+...+ ... ..+|......+..- +....+.+|.|..||+.|.+.+.-. T Consensus 6 fg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneaiv~d~ 85 (537) T protein:vir:10 6 FGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSVDFDGTIRNDHELITRYREMVLNPECDSAVDDVVNETICGNF 85 (537) T ss_pred ccceeecccccccCCcccCCCcccccceeecccccccccccccccchHHHHHHHHHHHhhccchhhHHHHhhcceeEecC Confidence 3332 111111 1111111111 111 12222211111111 1244577999999999999886522 Q ss_pred ---CeeEeeecCCcce---eeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC---CceEEEEEecC Q lcl|Aclame:pro 63 ---PVELYERSGDDRK---PATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD---GVIQGLYPLDN 133 (419) Q Consensus 63 ---~~~~~~~~~~~~~---~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~---G~~~~l~~~~~ 133 (419) |+.+--.+-+... ....+.+.++|+ --+....+++++ ..|...|..|..++-+.. .-+.+|..++| T Consensus 86 ~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~-ll~F~~~~~e~f----R~WYVDgRi~fhKiid~k~pk~GI~ELr~lDP 160 (537) T protein:vir:10 86 DDVPISIDLHNLKQSEKIKKLIRSEFDEILR-LLDFDNRAYEIF----RRWYVDGRLFFHKVIDPKKPRQGLVELRYVDP 160 (537) T ss_pred CCceEEEEecccccchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhheeeeEEEEEEEEeCCCccccceeeeeeCC Confidence 2222111111100 001122223332 122344555544 456677999988755422 23889999999 Q ss_pred ceeEEEEcc-----cee-------------EEEEeecc----------cccccceEEEecC--CCCCCcccccHHHHHHH Q lcl|Aclame:pro 134 EAVTVMKGP-----DLK-------------PMYRVAGA----------DPLPQRLVHHVRW--MSINGYTGLSPVLLHAN 183 (419) Q Consensus 134 ~~v~~~~~~-----~~~-------------~~~~~~~~----------~~~~~~~i~~~~~--~~~~~~~G~s~~~~~~~ 183 (419) ..++.++.- ... ..|+..+. ...+.+-|++... .+.++-+.+|-+..+.+ T Consensus 161 r~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~dAI~y~hSGl~d~n~~~i~syLhkAiK 240 (537) T protein:vir:10 161 RKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAPDSIAYCHSGIQDLNKNMVLSHLHKAIK 240 (537) T ss_pred ccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccHhheeeecccceeCCCCeeeeeehhhhH Confidence 999765431 010 00111111 1133444444442 23344556787888888 Q ss_pred HHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc------e-ec-------- Q lcl|Aclame:pro 184 AIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV------A-LL-------- 247 (419) Q Consensus 184 ~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~------~-vl-------- 247 (419) .++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ + .+ T Consensus 241 p~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyWLPRR 320 (537) T protein:vir:10 241 AVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFWLPRR 320 (537) T ss_pred HHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhhhhhccccc Confidence 8888877777776666677777778777643 332333444444444444332212122222 1 11 Q ss_pred --CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHH---HHHH--Hhh-HHHHHH Q lcl|Aclame:pro 248 --QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ---FVIY--TLL-PWVKRH 317 (419) Q Consensus 248 --~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~---~~~~--~i~-P~~~~i 317 (419) ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-+...++-+.....+..+. |... .|+ -+..-+ T Consensus 321 eGgrgTEItTLpGgqnlgem~---DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~lF 397 (537) T protein:vir:10 321 EGGRGTEISTLPGGQNLGELE---DVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQKFIARLRKRFSELF 397 (537) T ss_pred CCCcccceeeccccCCcChHH---HHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHH Confidence 14567766653 233444 4558889999999999998865443333222222221 2111 111 122223 Q ss_pred HHHHHhhccC-----hhhhhh--hhh--hhhhhhhhhc-----cHHHHHHHHHHHH--hCCCcCHH------------HH Q lcl|Aclame:pro 318 EQAKTRDLLL-----PSERKQ--YFI--EYNLAGLLRG-----DQSSRYAAYAVGR--QWGWLSIN------------DI 369 (419) Q Consensus 318 ~~~l~~~ll~-----~~~~~~--~~~--~fd~~~~~~~-----d~~~~~~~~~~~~--~~g~~T~N------------E~ 369 (419) .+-|.++|+. +.+... ..+ .|..|..... -+..|..+++.+- -+..++.+ |+ T Consensus 398 ~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~tDeeI 477 (537) T protein:vir:10 398 VDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQTESEI 477 (537) T ss_pred HHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccCHHHH Confidence 3333344332 223221 223 3333322110 0122333333221 11122333 33 Q ss_pred HHH-------h--CCCCCC----CcceeeeccccccccccccccCCCCCCccc-cccchhcc Q lcl|Aclame:pro 370 RRL-------E--NMPPVK----GGDIYLSPMNMVDASKPQPIPMGKTEPTKA-ALDEIGRI 417 (419) Q Consensus 370 R~~-------l--Gl~p~~----ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~e~~~~ 417 (419) -++ . |+=+-| +|+.-.-. ..++...+..++..+..+.+ ..-++|.| T Consensus 478 ~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:10 478 KEIDKEIKQEIADGVIMDPQAMQAMEMGIGD--EEPVPEGGEEPQTDPNSAVSPADQKRGEL 537 (537) T ss_pred HHHHHHHHHHhhCCCCCCcccccccccCCCC--cccCCCCCCCcccCCccCCCCCCccCCCC Confidence 211 1 111111 11111000 11111111111111111111 22345556 No 223 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=81.54 E-value=0.085 Score=26.46 Aligned_cols=409 Identities=12% Similarity=0.100 Sum_probs=164.3 Q ss_pred CC----ccchhcc---cccccccccchHHHHhhcCC----Cccccc-cc--------CHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MF----FSRQLLS---NLGQTQPGSGGWVSALLGSA----RSEAGQ-VV--------TPASALSLTVLQNCVTLLAESIA 60 (419) Q Consensus 1 M~----f~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~--------~~~~~~~~~~v~~~i~~ia~~ia 60 (419) |. |.-.-+. ..+...|...+....+.++. ....+. .. .....+.+|.|..||+.|.+.+. T Consensus 1 m~~lfgf~i~~~~~~~~~S~vpp~~~~~~~~i~~g~~g~~v~~~g~~~~~n~~eLI~~YR~ma~~pEVd~Av~eIVneaI 80 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQSPVPPNDEASVSTVAGGYFGTYVDTSGGQNSRNEYELIRRYRDMSLHPEVDSAIDEIVNEFV 80 (564) T ss_pred CcchhcceeeeeccCCCCCcccCCcCCChhhhhccccceeeecccccchhhHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 43 3311111 11122222222222222221 111111 01 12345789999999999998753 Q ss_pred cC-----CeeEeeecCCccee---eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec----CCCceEEE Q lcl|Aclame:pro 61 QL-----PVELYERSGDDRKP---ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD----QDGVIQGL 128 (419) Q Consensus 61 ~~-----~~~~~~~~~~~~~~---~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~----~~G~~~~l 128 (419) -. |+.|--.+-+-... ...+.+.++|+ --|....+++++ ..|...|..|..++-+ ..| +.+| T Consensus 81 v~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~-ll~F~~~~~e~f----R~WYVDgRi~fHkiid~~~pk~G-I~eL 154 (564) T protein:vir:10 81 VNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILR-MMNFNVNAHEII----RNWYVDGRSHYHKVIDLDNPKKG-ILEL 154 (564) T ss_pred EecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhhhhcceEEEEEEeeCCChhhh-hhhh Confidence 21 22221111100000 01122223332 123344555554 4566779999887543 234 8899 Q ss_pred EEecCceeEEEEccc------ee---------------EEEEeeccc---------------------ccccceEEEecC Q lcl|Aclame:pro 129 YPLDNEAVTVMKGPD------LK---------------PMYRVAGAD---------------------PLPQRLVHHVRW 166 (419) Q Consensus 129 ~~~~~~~v~~~~~~~------~~---------------~~~~~~~~~---------------------~~~~~~i~~~~~ 166 (419) ..++|..++.++... +. ..|+..... .++.+-|.+.+. T Consensus 155 r~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~~ikI~~daI~y~hS 234 (564) T protein:vir:10 155 RYIDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQEGIKIASDAIAQSTS 234 (564) T ss_pred hhhcccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCcccccccccccccccceeechhhcceecc Confidence 999999887655210 00 011111100 112233333332 Q ss_pred C--CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCc Q lcl|Aclame:pro 167 M--SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKK 243 (419) Q Consensus 167 ~--~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~ 243 (419) . +.++-.-+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|. T Consensus 235 GL~d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGe 314 (564) T protein:vir:10 235 GLMDLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGE 314 (564) T ss_pred cceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCce Confidence 1 12222234567777777777776666666665667777777777643 33233344444444444433221112222 Q ss_pred c------e-ec----------CCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc-CcccccHHHHH--- Q lcl|Aclame:pro 244 V------A-LL----------QEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELE-RATFSNIEHQS--- 302 (419) Q Consensus 244 ~------~-vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~-~~~~sn~e~~~--- 302 (419) + + .+ ..|.+++.|.... .+.-++-.++..+.+..+++||.+-+.... +-+.....+.. T Consensus 315 vrddrk~msMlEDyWLPRReGgrgTEItTLpGgq-nLgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDE 393 (564) T protein:vir:10 315 IRDDKKHMSMLEDFWLPRREGGRGTEITTLPGGQ-NLGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDE 393 (564) T ss_pred ecccchhhhhHhhhcccccCCCcccceeeccccC-CcchHHHHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHH Confidence 2 1 11 1456777665332 222233455888999999999998886542 12221111111 Q ss_pred HHHHHH--Hhh-HHHHHHHHHHHhhccC-----hhhhh----hhhhhhhhhhhhhc-----cHHHHHHHHHHH--HhCCC Q lcl|Aclame:pro 303 LQFVIY--TLL-PWVKRHEQAKTRDLLL-----PSERK----QYFIEYNLAGLLRG-----DQSSRYAAYAVG--RQWGW 363 (419) Q Consensus 303 ~~~~~~--~i~-P~~~~i~~~l~~~ll~-----~~~~~----~~~~~fd~~~~~~~-----d~~~~~~~~~~~--~~~g~ 363 (419) ..|... .|+ -+...+.+-|.++|+. +.+.. ..++.|..|..... -+..|..+++.+ +-+.. T Consensus 394 iKF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky 473 (564) T protein:vir:10 394 LKFTKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKY 473 (564) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccc Confidence 112211 111 1222233333444332 22322 12233333321110 012233333222 11111 Q ss_pred ------------cCHHHHHHH-----------hCCCCC--CCcceeeecc-ccccccccc-------cc-----cCCCCC Q lcl|Aclame:pro 364 ------------LSINDIRRL-----------ENMPPV--KGGDIYLSPM-NMVDASKPQ-------PI-----PMGKTE 405 (419) Q Consensus 364 ------------~T~NE~R~~-----------lGl~p~--~ggD~~~~~~-n~~~~~~~~-------~~-----~~~~~~ 405 (419) +|=.|+-++ +..+|. +.||..-++. .+.|.+... +. +..++. T Consensus 474 ~S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~a~~~~ 553 (564) T protein:vir:10 474 FSTEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQNQAFAPELQAAQDDLAAEREIKKLNSAPKPP 553 (564) T ss_pred cchHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCCCcCCcchhhhccccccccChhhhccCCCCC Confidence 233333211 112332 2344222221 112211110 10 111111 Q ss_pred Cccccccchhc Q lcl|Aclame:pro 406 PTKAALDEIGR 416 (419) Q Consensus 406 ~~~~~~~e~~~ 416 (419) +..+...+..+ T Consensus 554 ~~~~~~~~~~~ 564 (564) T protein:vir:10 554 PSQQSKSQSNK 564 (564) T ss_pred CCCCCcCcCCC Confidence 22222222222 No 224 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=80.68 E-value=0.093 Score=26.25 Aligned_cols=395 Identities=10% Similarity=0.001 Sum_probs=170.6 Q ss_pred CCccchhcc---------c-ccccccccchHH------------HHhhcCCCcccccc------c-CHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLS---------N-LGQTQPGSGGWV------------SALLGSARSEAGQV------V-TPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~---------~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~------~-~~~~~~~~~~v~~~ 51 (419) ++||-+... + .+...|...+.- ..+++..-...+.. | .....+.+|.|..| T Consensus 7 f~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~A 86 (516) T protein:vir:10 7 FKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINNPEVERA 86 (516) T ss_pred cccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhccchhhH Confidence 335432111 1 111112211111 11111111101111 0 12345789999999 Q ss_pred HHHHHHhhccC-----CeeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec-CC Q lcl|Aclame:pro 52 VTLLAESIAQL-----PVELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD-QD 122 (419) Q Consensus 52 i~~ia~~ia~~-----~~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~-~~ 122 (419) |+.|.+.+.-. |+.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+ .. T Consensus 87 v~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fhKiid~~k 161 (516) T protein:vir:10 87 VANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCR-LLDASRKLDTLF----RRWYVDSRIFFHKIMPNPK 161 (516) T ss_pred HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhhhhcceEEEEEEecCcc Confidence 99999876422 2222111111 000001122223332 122344555544 4566779999885434 33 Q ss_pred CceEEEEEecCceeEEEEcc-----ce--------eEEEEe--------ecc-------cccccceEEEecCC--CCCCc Q lcl|Aclame:pro 123 GVIQGLYPLDNEAVTVMKGP-----DL--------KPMYRV--------AGA-------DPLPQRLVHHVRWM--SINGY 172 (419) Q Consensus 123 G~~~~l~~~~~~~v~~~~~~-----~~--------~~~~~~--------~~~-------~~~~~~~i~~~~~~--~~~~~ 172 (419) .-+.+|..++|..++.++.- ++ .+.+|. .+. ...+.+-|++.+.. +.++- T Consensus 162 ~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~d~~~~ 241 (516) T protein:vir:10 162 KGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGLMDCSDR 241 (516) T ss_pred ccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccceeCCCC Confidence 44899999999999865531 11 111111 111 11244555555532 22332 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc------e Q lcl|Aclame:pro 173 TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV------A 245 (419) Q Consensus 173 ~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~------~ 245 (419) .-+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=..+.|.+ + T Consensus 242 ~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m 321 (516) T protein:vir:10 242 GIIGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNL 321 (516) T ss_pred ceeeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhh Confidence 236778888888887777777666666667777778777643 333333444455555444433222222322 1 Q ss_pred e-c----------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc--ccHHHHHHH---HHH Q lcl|Aclame:pro 246 L-L----------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNIEHQSLQ---FVI 307 (419) Q Consensus 246 v-l----------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~--sn~e~~~~~---~~~ 307 (419) - + ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-+...++.+. ....+..+. |.. T Consensus 322 sMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~K 398 (516) T protein:vir:10 322 SMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMD---DVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRK 398 (516) T ss_pred hhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHH Confidence 1 1 14567766653 233444 4558889999999999998865444321 222222222 222 Q ss_pred H--Hhh-HHHHHHHHHHHhhccC-----hhhhhh--hhh--hhhhhhhhhc-----cHHHHHHHHHHH--HhCCCcCHHH Q lcl|Aclame:pro 308 Y--TLL-PWVKRHEQAKTRDLLL-----PSERKQ--YFI--EYNLAGLLRG-----DQSSRYAAYAVG--RQWGWLSIND 368 (419) Q Consensus 308 ~--~i~-P~~~~i~~~l~~~ll~-----~~~~~~--~~~--~fd~~~~~~~-----d~~~~~~~~~~~--~~~g~~T~NE 368 (419) . .|+ -+..-+.+-|.++|+. +.+... ..+ .|..|..... -+..|..+++.+ +-+..++.+= T Consensus 399 FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~y 478 (516) T protein:vir:10 399 FVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDY 478 (516) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHH Confidence 1 111 1222233334444332 223221 233 3333322110 012333333332 1334566666 Q ss_pred HHH-HhCCCCCC--CcceeeeccccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 369 IRR-LENMPPVK--GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 369 ~R~-~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) +|+ .|.+...+ .-++. +.... +.+--+.++.|.+= T Consensus 479 i~k~ILr~tDeei~~e~k~--------I~~E~-----~~~~~~~p~~~~~f 516 (516) T protein:vir:10 479 VMKNILQMTEEQIAQEEKQ--------IEQEA-----GIKRFQNPENEDDF 516 (516) T ss_pred HHHHHhcCCHhhHHHHHHH--------HHHhh-----hCCCCCCCCccccC Confidence 654 34444321 00000 00000 00000111111111 No 225 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=80.68 E-value=0.093 Score=26.25 Aligned_cols=395 Identities=10% Similarity=0.001 Sum_probs=170.6 Q ss_pred CCccchhcc---------c-ccccccccchHH------------HHhhcCCCcccccc------c-CHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLS---------N-LGQTQPGSGGWV------------SALLGSARSEAGQV------V-TPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~---------~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~------~-~~~~~~~~~~v~~~ 51 (419) ++||-+... + .+...|...+.- ..+++..-...+.. | .....+.+|.|..| T Consensus 7 f~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~A 86 (516) T protein:vir:10 7 FKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINNPEVERA 86 (516) T ss_pred cccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhccchhhH Confidence 335432111 1 111112211111 11111111101111 0 12345789999999 Q ss_pred HHHHHHhhccC-----CeeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec-CC Q lcl|Aclame:pro 52 VTLLAESIAQL-----PVELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD-QD 122 (419) Q Consensus 52 i~~ia~~ia~~-----~~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~-~~ 122 (419) |+.|.+.+.-. |+.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+ .. T Consensus 87 v~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fhKiid~~k 161 (516) T protein:vir:10 87 VANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCR-LLDASRKLDTLF----RRWYVDSRIFFHKIMPNPK 161 (516) T ss_pred HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhhhhcceEEEEEEecCcc Confidence 99999876422 2222111111 000001122223332 122344555544 4566779999885434 33 Q ss_pred CceEEEEEecCceeEEEEcc-----ce--------eEEEEe--------ecc-------cccccceEEEecCC--CCCCc Q lcl|Aclame:pro 123 GVIQGLYPLDNEAVTVMKGP-----DL--------KPMYRV--------AGA-------DPLPQRLVHHVRWM--SINGY 172 (419) Q Consensus 123 G~~~~l~~~~~~~v~~~~~~-----~~--------~~~~~~--------~~~-------~~~~~~~i~~~~~~--~~~~~ 172 (419) .-+.+|..++|..++.++.- ++ .+.+|. .+. ...+.+-|++.+.. +.++- T Consensus 162 ~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~d~~~~ 241 (516) T protein:vir:10 162 KGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGLMDCSDR 241 (516) T ss_pred ccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccceeCCCC Confidence 44899999999999865531 11 111111 111 11244555555532 22332 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc------e Q lcl|Aclame:pro 173 TGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV------A 245 (419) Q Consensus 173 ~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~------~ 245 (419) .-+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=..+.|.+ + T Consensus 242 ~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m 321 (516) T protein:vir:10 242 GIIGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVKNQKRNL 321 (516) T ss_pred ceeeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeeccchhhh Confidence 236778888888887777777666666667777778777643 333333444455555444433222222322 1 Q ss_pred e-c----------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc--ccHHHHHHH---HHH Q lcl|Aclame:pro 246 L-L----------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERATF--SNIEHQSLQ---FVI 307 (419) Q Consensus 246 v-l----------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~--sn~e~~~~~---~~~ 307 (419) - + ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-+...++.+. ....+..+. |.. T Consensus 322 sMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~K 398 (516) T protein:vir:10 322 SMTEDYWLMRRDGKSVTEVSSLPGAQTMGDMD---DVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDELDFRK 398 (516) T ss_pred hhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHHHHHH Confidence 1 1 14567766653 233444 4558889999999999998865444321 222222222 222 Q ss_pred H--Hhh-HHHHHHHHHHHhhccC-----hhhhhh--hhh--hhhhhhhhhc-----cHHHHHHHHHHH--HhCCCcCHHH Q lcl|Aclame:pro 308 Y--TLL-PWVKRHEQAKTRDLLL-----PSERKQ--YFI--EYNLAGLLRG-----DQSSRYAAYAVG--RQWGWLSIND 368 (419) Q Consensus 308 ~--~i~-P~~~~i~~~l~~~ll~-----~~~~~~--~~~--~fd~~~~~~~-----d~~~~~~~~~~~--~~~g~~T~NE 368 (419) . .|+ -+..-+.+-|.++|+. +.+... ..+ .|..|..... -+..|..+++.+ +-+..++.+= T Consensus 399 FI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~~y 478 (516) T protein:vir:10 399 FVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYVSHDY 478 (516) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHH Confidence 1 111 1222233334444332 223221 233 3333322110 012333333332 1334566666 Q ss_pred HHH-HhCCCCCC--CcceeeeccccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 369 IRR-LENMPPVK--GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 369 ~R~-~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) +|+ .|.+...+ .-++. +.... +.+--+.++.|.+= T Consensus 479 i~k~ILr~tDeei~~e~k~--------I~~E~-----~~~~~~~p~~~~~f 516 (516) T protein:vir:10 479 VMKNILQMTEEQIAQEEKQ--------IEQEA-----GIKRFQNPENEDDF 516 (516) T ss_pred HHHHHhcCCHhhHHHHHHH--------HHHhh-----hCCCCCCCCccccC Confidence 654 34444321 00000 00000 00000111111111 No 226 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=73.64 E-value=0.17 Score=24.83 Aligned_cols=393 Identities=11% Similarity=0.009 Sum_probs=172.2 Q ss_pred CCccchhcccccccccccchH-----------------HHHhhcCCCcccccccC-HHHH-hccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGW-----------------VSALLGSARSEAGQVVT-PASA-LSLTVLQNCVTLLAESIAQ 61 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~i~~ia~~ia~ 61 (419) |+..++--....+.-++..++ +.++... ...+...+. .+.+ .+-+.+..+...|-+.. T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n-~~~~~~~~lrg~~~~~~r~~~~ps~~~~~~~~-- 77 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLT-NTSDYQVILRGGDEGDQRPIYVPNGEKLIEAK-- 77 (527) T ss_pred CCccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcC-chhheeeecCCccccccceeeehhhHHhhCCc-- Confidence 887655322211111111111 0011111 000111110 0110 01122222222221111 Q ss_pred CCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC---CCceEEEEEecCceeEE Q lcl|Aclame:pro 62 LPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ---DGVIQGLYPLDNEAVTV 138 (419) Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~---~G~~~~l~~~~~~~v~~ 138 (419) ..|.+.. -+-........+..+|+..- ...++.....+...+-+..|.+...+..+. .|.-..+..++|..+.+ T Consensus 78 ~~~~~~g--~~~~~~~~~e~v~~~lr~~~-~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP~~~f~ 154 (527) T protein:vir:10 78 MRFLGQG--LKWEFSKKDAKVDDAIRVLF-DRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP 154 (527) T ss_pred ceeeccC--ccccccchhHHHHHHHHHHH-HHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCcceeee Confidence 1111110 00000000112233332211 123455566777888889999988888763 23344555555554443 Q ss_pred EEccce---------------------------------------------eEEEEe----ecc-----------ccc-- Q lcl|Aclame:pro 139 MKGPDL---------------------------------------------KPMYRV----AGA-----------DPL-- 156 (419) Q Consensus 139 ~~~~~~---------------------------------------------~~~~~~----~~~-----------~~~-- 156 (419) ..+.++ ...+.. .+. ..+ T Consensus 155 ~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~ 234 (527) T protein:vir:10 155 YEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKK 234 (527) T ss_pred eecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccccccchhhhhh Confidence 332211 000000 000 000 Q ss_pred -ccc-------------eEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhH Q lcl|Aclame:pro 157 -PQR-------------LVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQ 221 (419) Q Consensus 157 -~~~-------------~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~ 221 (419) ... .|+|+++ .+.+...|.|-+.-.+..++.......-.....+-+|.|-.+++.-... + .. T Consensus 235 ~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~v--d-~~ 311 (527) T protein:vir:10 235 LSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR--D-SR 311 (527) T ss_pred hcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecccccc--c-cc Confidence 000 1344443 3456788999988777777776655555555555566665555321111 0 00 Q ss_pred HHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHH Q lcl|Aclame:pro 222 ASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQ 301 (419) Q Consensus 222 ~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~ 301 (419) .. ...- .-..|.++-++++.++..++..+.-..+........+.|+..-++|..-+|..+.++ +.... T Consensus 312 G~-------~~~~---~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~--~~SG~ 379 (527) T protein:vir:10 312 GN-------MVPW---TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAV--AESGI 379 (527) T ss_pred CC-------cCcc---ccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCc--CcHHH Confidence 00 0000 011345777889999999887776666788889999999999999999998666544 22222 Q ss_pred HHHHHHHHhhHHHHHHHHH-HHhh-------------ccCh-------hhhhhhhhhhhhhhhhhccHHHHHHHHHHHHh Q lcl|Aclame:pro 302 SLQFVIYTLLPWVKRHEQA-KTRD-------------LLLP-------SERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQ 360 (419) Q Consensus 302 ~~~~~~~~i~P~~~~i~~~-l~~~-------------ll~~-------~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~ 360 (419) .. .-.+.|++.+.+.. +..+ +|.- ......-+...+...+..|.++..+...+++. T Consensus 380 AL---eL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~ 456 (527) T protein:vir:10 380 AL---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLLELWE 456 (527) T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHH Confidence 22 22334444332221 0000 0000 00111122333445678899999999999999 Q ss_pred CCCcCHHHHHHHh----CCCCCCCcc-------eeeeccccccc-cccccccCCCCC--Cccccccchhccc Q lcl|Aclame:pro 361 WGWLSINDIRRLE----NMPPVKGGD-------IYLSPMNMVDA-SKPQPIPMGKTE--PTKAALDEIGRIL 418 (419) Q Consensus 361 ~g~~T~NE~R~~l----Gl~p~~ggD-------~~~~~~n~~~~-~~~~~~~~~~~~--~~~~~~~e~~~~~ 418 (419) +|+++.-=+-++| |.+.. +.+ ...+-+-.+.. ++.+..-....+ +.+.+.--|+.-| T Consensus 457 aGiiS~etAv~~L~~~~g~eD~-E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 457 AGLIPAKKLTEELSKIMGFELT-EEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred cCchhHHHHHHHHHhccCCCch-HHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCCC Confidence 9999998887777 43322 111 11111111110 111111011111 1111111111222 No 227 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=67.17 E-value=0.26 Score=23.83 Aligned_cols=370 Identities=10% Similarity=0.008 Sum_probs=153.2 Q ss_pred CCcc--chhcccccccccccchHHHHhhcCC-------Ccc----cccccCHHHHhccHHHHHHHHHHHHhhccCCeeEe Q lcl|Aclame:pro 1 MFFS--RQLLSNLGQTQPGSGGWVSALLGSA-------RSE----AGQVVTPASALSLTVLQNCVTLLAESIAQLPVELY 67 (419) Q Consensus 1 M~f~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~ 67 (419) |-.. +++.+......+.- .-......+- ... ......+..-+.++....+++..++.+-+-|+.+. T Consensus 1 l~~~~i~~~i~~~~~~~~r~-~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~ 79 (451) T protein:vir:10 1 MELEKIRAIISADAARRQEI-LQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFD 79 (451) T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheecccceee Confidence 1100 00000000000000 0000011000 000 00000011123356677888888888888887753 Q ss_pred eecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCC--------CceEEEEEecCceeEEE Q lcl|Aclame:pro 68 ERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQD--------GVIQGLYPLDNEAVTVM 139 (419) Q Consensus 68 ~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~--------G~~~~l~~~~~~~v~~~ 139 (419) ..+.+.. ...+...+ . | ........+..+.+.+|.||.++.++.. | ...+..++|..+-+. T Consensus 80 ~~~~~~~----~~~~~~~~--~-n---~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~-~~~~~~i~p~~~~~v 148 (451) T protein:vir:10 80 IDNNKEL----NEKVTDVL--G-N---EFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQ-TFKYGVVNTEEIIPI 148 (451) T ss_pred cCCcHHH----HHHHHHHh--c-c---CHHHHHHHHHHHHhhcCeEEEEEeecCCccccccccc-ceeEEEEcccceEEE Confidence 2111110 01111222 1 2 3445666788889999999999877653 3 223555666666555 Q ss_pred Eccce------eEEEEee-----cc---------cccccceEEEec----------------CCCC---------CCccc Q lcl|Aclame:pro 140 KGPDL------KPMYRVA-----GA---------DPLPQRLVHHVR----------------WMSI---------NGYTG 174 (419) Q Consensus 140 ~~~~~------~~~~~~~-----~~---------~~~~~~~i~~~~----------------~~~~---------~~~~G 174 (419) ++... .+.++.. +. ....++.+++.+ .+++ +...| T Consensus 149 ydd~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~ 228 (451) T protein:vir:10 149 YRNGIERELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIKK 228 (451) T ss_pred EcCCCCCceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCCC Confidence 43221 0111100 00 000111111111 0000 12246 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC-----C Q lcl|Aclame:pro 175 LSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ-----E 249 (419) Q Consensus 175 ~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~-----~ 249 (419) .|.+......++....+.....+.+...+.|-.+++ +. .++.+++....++. .+++.+. . T Consensus 229 ~~d~e~v~~liDa~~~~~S~~~~~~~~~~~~~l~~~--g~-~~~~~~~~~~~~~~------------~~~i~~~~~~~~~ 293 (451) T protein:vir:10 229 QSDLSKYKKILDLYDRVMSGFANDLEDIQQIIYILE--NF-GGEDTSEFLKELKR------------YKTIKTETDSEGD 293 (451) T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhccceeeee--cC-CcccchhhHHHHhh------------CCeEEecCcCCcc Confidence 777777777777776666666666666665655443 22 22223333332221 1233332 2 Q ss_pred CceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHHHHHhhHHHHHHHHHHHhh----- Q lcl|Aclame:pro 250 GMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTLLPWVKRHEQAKTRD----- 324 (419) Q Consensus 250 g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~~~~i~P~~~~i~~~l~~~----- 324 (419) |.++.-+........+.+..+...+.|...-++|..-.... +| .......+....+.-.+...+..|... T Consensus 294 ~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--gn---~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~ 368 (451) T protein:vir:10 294 SGGLKTMQIEIPTEARKIILEILKKQIYESGQGLQQDTENF--GN---ASGVALKFFYRKLELKSGLLETEFRTSFDKLI 368 (451) T ss_pred CCcceEEeecCCHHHHHHHHHHHHHHHHHHhCccccccccc--cc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22333334333445567778888999999999985321111 12 111111122222222222222221111 Q ss_pred -----ccChhhhhhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccccc Q lcl|Aclame:pro 325 -----LLLPSERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQPI 399 (419) Q Consensus 325 -----ll~~~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~~ 399 (419) ++...+.. .+.+.++.-...|..+.++.+.++. |+++..-+.+++++-.-+. .-.. ........ T Consensus 369 ~li~~~~~~~d~~--~i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~v~d~~--~e~~-----~~~ee~~~ 437 (451) T protein:vir:10 369 KAILYFLGVTDYK--KIQQTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPWVDDVE--EAEK-----LYLEEKKI 437 (451) T ss_pred HHHHHHhCCCCcc--ceeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHH--HHHH-----HHHHHHHH Confidence 11211212 2333344556778899999988884 7899988888775532110 0000 00000000 Q ss_pred cCCCCCCccccccc Q lcl|Aclame:pro 400 PMGKTEPTKAALDE 413 (419) Q Consensus 400 ~~~~~~~~~~~~~e 413 (419) ...+....-++-++ T Consensus 438 ~~~~~~~~~~~~~~ 451 (451) T protein:vir:10 438 QASKVSDDYNNFTE 451 (451) T ss_pred HHHHHHhhcCCCCC Confidence 00000000000011 No 228 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=66.66 E-value=0.26 Score=23.75 Aligned_cols=386 Identities=11% Similarity=-0.005 Sum_probs=144.2 Q ss_pred CC-ccchhcccccccccccchHHHHhhcCCCc-------c----ccccc---C---HHHH----hccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MF-FSRQLLSNLGQTQPGSGGWVSALLGSARS-------E----AGQVV---T---PASA----LSLTVLQNCVTLLAES 58 (419) Q Consensus 1 M~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~~~---~---~~~~----~~~~~v~~~i~~ia~~ 58 (419) |- ...+-..-.... + .=..+.++.++... + ..... + ...+ .-.+++...++.++.. T Consensus 32 m~dV~~~hp~y~a~~-~-~W~~ird~~~G~~~~r~~g~~YLP~~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~ 109 (535) T protein:vir:80 32 LPNVGYQRVEFGEML-P-KWRKIMDCLSGQEAIKAKREEYLPMPSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQ 109 (535) T ss_pred CCCCCcCCHHHHHHH-H-HHHHHHHHhcChHHHHhcccccCCCCCcccCCcCCHHHHHHHHhhccCCChhHHHHHHHhch Confidence 33 100000000000 0 00012222222110 0 00000 0 1112 2234444555555544 Q ss_pred hccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce------------E Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI------------Q 126 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~------------~ 126 (419) +-+-|..+ .....+..++.+---...+-.+|.+.++...+.+|.+++++.....|.. - T Consensus 110 vfrk~p~~----------~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~t~ade~~~~~rP 179 (535) T protein:vir:80 110 VFSRDPIR----------QLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRP 179 (535) T ss_pred hhcCCcce----------eccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccHHHHHhcCCCc Confidence 44333222 1123455555444445567899999999999999999999986654432 1 Q ss_pred EEEEecCceeE-----------------E-----EEcc-----------------ceeEEEEee---ccc--------cc Q lcl|Aclame:pro 127 GLYPLDNEAVT-----------------V-----MKGP-----------------DLKPMYRVA---GAD--------PL 156 (419) Q Consensus 127 ~l~~~~~~~v~-----------------~-----~~~~-----------------~~~~~~~~~---~~~--------~~ 156 (419) .+..+.+..|- + +.+. ++.+..... +.. .. T Consensus 180 y~~~y~ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~~G~y~v~~~~~~~~~~~~~~~~~~~ 259 (535) T protein:vir:80 180 TITLVHPTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHV 259 (535) T ss_pred EEEEechhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecCCceEEEEEEEeecCCccccccceee Confidence 12222222210 0 0010 011110000 000 00 Q ss_pred -------ccce--EEEecCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHH Q lcl|Aclame:pro 157 -------PQRL--VHHVRWMSINGYTGLSPVLLHANA-IGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDR 226 (419) Q Consensus 157 -------~~~~--i~~~~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419) .-.. ++++.....+...|.+|+..++.. +...+...+ ....+...+.|..+++-... +-.+. T Consensus 260 ~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd-~~~il~~~~~P~l~i~G~~~-------~~~~~ 331 (535) T protein:vir:80 260 PTDGNGNPFKEIPFQFIGPLDNNADIDHPPLLDLCEVNIGHYRNSAD-YEEMAFVAGQPTAFFTGLTK-------DWVED 331 (535) T ss_pred cccCCCcccCeeEEEEeecCCCCCCCCccchHHHHHHHHHHhhchhH-HHHHHHHhcCceeeeecCch-------hhhhc Confidence 0011 222222233344677776544433 333333333 44445556777777763211 00000 Q ss_pred HHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHH- Q lcl|Aclame:pro 227 ITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQF- 305 (419) Q Consensus 227 ~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~- 305 (419) ..+ -....-|+ ...+.++.|.++.-+..+++-+. .+..+...++++.. | ..++. ...++.+..+.....- T Consensus 332 ~~~-~~~i~iG~---~~~~~lP~~~~~~~~e~~~~~~a-~~~l~~~e~qM~~l-G--a~ll~-~~~~~~Ta~~a~~~~~~ 402 (535) T protein:vir:80 332 VFK-DFKVHLGS---RAIIPLPQGATAGILQITPNSVP-FEAMTHKESQMIAM-G--ANLLV-KSGGNRTFGEAQQEEAS 402 (535) T ss_pred CCC-CcceEecC---cccccCCCCCCcceeeeccchhH-HHHHHHHHHHHHHH-H--HHhhc-cCcccccHHHHHHHHHH Confidence 000 00022333 23566776655544444444333 23333334444432 2 11121 1111221112111111 Q ss_pred HHHHhhHHHHHHHHHHHhhcc--Chhhh-----hhhhhhhhhhhh-hhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 306 VIYTLLPWVKRHEQAKTRDLL--LPSER-----KQYFIEYNLAGL-LRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPP 377 (419) Q Consensus 306 ~~~~i~P~~~~i~~~l~~~ll--~~~~~-----~~~~~~fd~~~~-~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p 377 (419) -...|.-++..++++++..|- ....+ ....+..+.+-. ...|.+. ...+-+++..|.++....++.|..-- T Consensus 403 ~~S~L~~~a~~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~~-~~all~~~~~G~Is~et~~~~L~r~g 481 (535) T protein:vir:80 403 EQSILSACTKNVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPNE-RAELILEWQQGAITFKEMRAGLRRAG 481 (535) T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHHH-HHHHHHHHhcCCCCHHHHHHHHHhCC Confidence 233445566677777665431 11111 112233333222 2224443 44455678899999888887763321 Q ss_pred -----CCCccee--------eecc--ccccccccccccCCCCCCccccccchhc Q lcl|Aclame:pro 378 -----VKGGDIY--------LSPM--NMVDASKPQPIPMGKTEPTKAALDEIGR 416 (419) Q Consensus 378 -----~~ggD~~--------~~~~--n~~~~~~~~~~~~~~~~~~~~~~~e~~~ 416 (419) +++-++. -.+. +..-....+..+..+-.+++...++.|. T Consensus 482 vl~~~~~~eee~~ri~~E~~~~~~~~g~~~d~~~~g~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:80 482 VASEDDAKAETEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) T ss_pred CCCcccchHHHHHHHHhhhhhccccCCCCCCCCCCCCCcCcccCCccccccCCC Confidence 1111100 0011 1000000011111111112222333333 No 229 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=65.09 E-value=0.29 Score=23.54 Aligned_cols=383 Identities=11% Similarity=-0.028 Sum_probs=146.2 Q ss_pred CC-ccchhcccccccccccchHHHHhhcCCCcc--ccccc------------C---HHHHhc----cHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MF-FSRQLLSNLGQTQPGSGGWVSALLGSARSE--AGQVV------------T---PASALS----LTVLQNCVTLLAES 58 (419) Q Consensus 1 M~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~------------~---~~~~~~----~~~v~~~i~~ia~~ 58 (419) |- ...+-..-.... + .=..+.++.++...- .+..+ + ...+++ .+++...++.+... T Consensus 1 m~~V~~~hp~y~~~~-~-~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~~Y~~rl~rA~~~n~~~~t~~~l~G~ 78 (501) T protein:vir:95 1 MPNVSFIRPELGKLL-P-LYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKARYEAYLKRAVFYNVARRTLFGLVGQ 78 (501) T ss_pred CCCCCCCCHHHHHHH-H-HHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchHHHHHHhhccccCchHHHHHHHHhhh Confidence 44 110000000000 0 000122333322110 00000 0 111222 23344444444444 Q ss_pred hccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce------------- Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI------------- 125 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~------------- 125 (419) +-.-|..+ . ....+..++.+---...+-.+|.+.++...+.+|.+++++.....+.. T Consensus 79 vf~k~p~~---------~-~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~ 148 (501) T protein:vir:95 79 VFMRDPVV---------K-VPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRI 148 (501) T ss_pred hhcCCcce---------e-CcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccC Confidence 43333322 1 123455555444444567889999999999999999999976533210 Q ss_pred -EEEEEecCceeEE----------------------EEc-----------------cceeEEEEeec---cc-----cc- Q lcl|Aclame:pro 126 -QGLYPLDNEAVTV----------------------MKG-----------------PDLKPMYRVAG---AD-----PL- 156 (419) Q Consensus 126 -~~l~~~~~~~v~~----------------------~~~-----------------~~~~~~~~~~~---~~-----~~- 156 (419) -.+..+.|..|-- +.+ .++.+.+.... .. .. T Consensus 149 rPy~~~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~ 228 (501) T protein:vir:95 149 RPTLYVYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIP 228 (501) T ss_pred CcEEEEecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceec Confidence 1133333322200 000 11111111100 00 00 Q ss_pred ------------------ccce--EEEecCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHHccCCCceEEEeCCCC Q lcl|Aclame:pro 157 ------------------PQRL--VHHVRWMSINGYTGLSPVLLHANA-IGHAQAIQQYAGKSFMNGTALSGVIERPTDA 215 (419) Q Consensus 157 ------------------~~~~--i~~~~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~ 215 (419) .-.. ++++.....+...|.+|+..++.. +...+...+ ....+...+.|..+++-.. T Consensus 229 ~~~~~~~~~~~~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~lA~lni~hy~~ssd-~~~~l~~~~~P~l~i~G~~-- 305 (501) T protein:vir:95 229 KGNYQQYVVYKPTDAQGKRLTEIPFMFIGSENNDSNPDNPNFYDLASLNMAHYRNSAD-YEESCYIVGQPTPVLIGLT-- 305 (501) T ss_pred CCcccccceeeeeccCCCcCCeeeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhH-HHHHHHHcccceeeeeCCc-- Confidence 0000 122222222234456776554432 333333333 3444555677777765321 Q ss_pred CchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCccc Q lcl|Aclame:pro 216 PALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATF 295 (419) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~ 295 (419) ++..+.... ....-|+. ..+.++.|.++.=+..+++-+. .+..+...+++..+ | ..++... ..+. T Consensus 306 -----~~~~~~~~~--~~i~~G~~---~~~~lP~~~~~~~ie~~~~~i~-~~~l~~l~~~m~~~-G--a~ll~~~-~~~~ 370 (501) T protein:vir:95 306 -----EEWVTNVLK--GSVNFGSR---GGIPLPVGADAKLLQASENTML-KEAMDTKERQMVAL-G--AKLVEQK-EVQR 370 (501) T ss_pred -----ccccccCCC--Cceeeccc---ccccCCCCCceeEEecChhhHH-HHHHHHHHHHHHHH-H--HhhccCC-ccch Confidence 111100000 01122332 3566776665555555554443 33444444554433 3 2233211 1121 Q ss_pred ccHH-HHHHHHHHHHhhHHHHHHHHHHHhhccC--hhhh---hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHH Q lcl|Aclame:pro 296 SNIE-HQSLQFVIYTLLPWVKRHEQAKTRDLLL--PSER---KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDI 369 (419) Q Consensus 296 sn~e-~~~~~~~~~~i~P~~~~i~~~l~~~ll~--~~~~---~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~ 369 (419) +..+ .....--...|.-++..++++++..|-- ...+ .+..+.++.+-.........++.+.+++.+|.++.... T Consensus 371 Ta~~~~~~~~~~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~~t~ 450 (501) T protein:vir:95 371 TATEAELEAASEGSTLSSATKNVSAAFEWALKWAARWVGQADSGVKFELNTDFDIARMTPDERRSLVEEWQKGAITFEEM 450 (501) T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccccccCCHHHHHHHHHHHhCCCCcHHHH Confidence 1111 2222223445556677777776654321 1111 12234444442222223344555667889999999999 Q ss_pred HHHhCCCCCCCcc-----eee--eccccccccccccccCCCCCCccccccc Q lcl|Aclame:pro 370 RRLENMPPVKGGD-----IYL--SPMNMVDASKPQPIPMGKTEPTKAALDE 413 (419) Q Consensus 370 R~~lGl~p~~ggD-----~~~--~~~n~~~~~~~~~~~~~~~~~~~~~~~e 413 (419) ++.|-.--+...| +.. ..-+....+.+........+..+-..+| T Consensus 451 ~~~L~~~~v~~~~~~~e~e~i~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 451 RTGLRKAGVATEDDSKAKEKIAKDTAEAMALATPANVPGDGSGGDNVGNSE 501 (501) T ss_pred HHHHHhCCCCChhHHHHHHHHHhhhcCcccccccCCCCCCCcccccccCCC Confidence 8776333322110 000 0000111111111111111111111112 No 230 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=64.20 E-value=0.3 Score=23.42 Aligned_cols=398 Identities=14% Similarity=0.032 Sum_probs=173.3 Q ss_pred CCccchhccc----------ccccccccch-----------------HHHHhhcCCCcccc--ccc-CHHHHhccHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSN----------LGQTQPGSGG-----------------WVSALLGSARSEAG--QVV-TPASALSLTVLQN 50 (419) Q Consensus 1 M~f~~~~~~~----------~~~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~-~~~~~~~~~~v~~ 50 (419) ++||.+.... .+...|...+ +...+++.-..... .-| .....+.+|.|.. T Consensus 9 f~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~ma~~pEvd~ 88 (521) T protein:vir:10 9 LQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSLSKYHEVDN 88 (521) T ss_pred hhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHHHhhccchhh Confidence 3344321110 0111111111 11111111110000 000 1244578999999 Q ss_pred HHHHHHHhhccCC-----eeEeeecCCccee---eccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC- Q lcl|Aclame:pro 51 CVTLLAESIAQLP-----VELYERSGDDRKP---ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ- 121 (419) Q Consensus 51 ~i~~ia~~ia~~~-----~~~~~~~~~~~~~---~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~- 121 (419) ||+.|.+.+.-.. +.+--.+-+.... ...+.+.++|+ --+....+++++ ..|...|..|..++-+. T Consensus 89 Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fHkiid~~ 163 (521) T protein:vir:10 89 AIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILK-LLKFEREGKRHF----RRWYVDSRIYFHKMIDPA 163 (521) T ss_pred HHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhheeeeeEEEEEEeeCC Confidence 9999998865322 2221111111000 01122233332 122344555544 45667799998875432 Q ss_pred --CCceEEEEEecCceeEEEEccc-----------eeEEEEeec---c------------cccccceEEEecC--CCCCC Q lcl|Aclame:pro 122 --DGVIQGLYPLDNEAVTVMKGPD-----------LKPMYRVAG---A------------DPLPQRLVHHVRW--MSING 171 (419) Q Consensus 122 --~G~~~~l~~~~~~~v~~~~~~~-----------~~~~~~~~~---~------------~~~~~~~i~~~~~--~~~~~ 171 (419) ..-+.+|..++|..++.++... +...++..+ . ...+.+.|++.+. .+.++ T Consensus 164 ~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~daI~y~hSGL~d~~~ 243 (521) T protein:vir:10 164 RPKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPIDAIVYSHSGKVDIDG 243 (521) T ss_pred CccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeechhheeeecccceeCCC Confidence 2238999999999997654211 111122111 1 1245566666663 34456 Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc------ Q lcl|Aclame:pro 172 YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV------ 244 (419) Q Consensus 172 ~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~------ 244 (419) -+.+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ T Consensus 244 ~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk~ 323 (521) T protein:vir:10 244 KTIVGYLHNVIKPANQLKMLEDAMVIYRITRAPERRVFYIDVGTMPNKKATQHLNNVMQGLKNRVVYDSSTGKVKNSSNN 323 (521) T ss_pred CceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchhh Confidence 6778888999888888877777776666677777778877643 332333444444444444332212222222 Q ss_pred ee-c----------CCCceeeecCcC--hhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC-cccccHHHHHH---HHHH Q lcl|Aclame:pro 245 AL-L----------QEGMKFKPLSMT--NVDAALIDALRLSALDIARIYKIPAHMVNELER-ATFSNIEHQSL---QFVI 307 (419) Q Consensus 245 ~v-l----------~~g~~~~~l~~~--~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~-~~~sn~e~~~~---~~~~ 307 (419) +- + ..|.+++.|... .-+|+ -.++..+.+..+++||.+-+...++ -+.....+..+ .|.. T Consensus 324 msMlEDyWLpRReGgrgTEI~TLpggqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItRDEikF~K 400 (521) T protein:vir:10 324 LAMTEDYWLMRRDGKATTEVSTLPGAQSMGEMD---DVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITRDELQFTK 400 (521) T ss_pred hhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCccccCCCCCceecccccchhHHHHHHHH Confidence 11 1 145677666532 33444 4558889999999999988764321 12211111211 1221 Q ss_pred H--Hhh-HHHHHHHHHHHhhccC-----hhhhhh--hhh--hhhhhhhhhc-----cHHHHHHHHHHH----HhCCCcCH Q lcl|Aclame:pro 308 Y--TLL-PWVKRHEQAKTRDLLL-----PSERKQ--YFI--EYNLAGLLRG-----DQSSRYAAYAVG----RQWGWLSI 366 (419) Q Consensus 308 ~--~i~-P~~~~i~~~l~~~ll~-----~~~~~~--~~~--~fd~~~~~~~-----d~~~~~~~~~~~----~~~g~~T~ 366 (419) . .|+ -+..-+.+-|.++|+. +.+... ..+ .|..|..... -+..|..+++.+ +-+..++. T Consensus 401 FI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~yvGky~s~ 480 (521) T protein:vir:10 401 YIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEVTGKYLSH 480 (521) T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccccccccch Confidence 1 111 1222233334444332 223221 233 3333322110 122333333333 22224555 Q ss_pred HHHHH-HhCCCCCCCcceeeeccccccccccccccCCCCCCccccccchhcc Q lcl|Aclame:pro 367 NDIRR-LENMPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRI 417 (419) Q Consensus 367 NE~R~-~lGl~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 417 (419) +=+|+ .|.+...+= .+.+..-.. ..+.+--+++++|.+.. T Consensus 481 dyi~k~ILr~tDeei----------k~~~k~I~~-E~~~~~~~~p~~e~~df 521 (521) T protein:vir:10 481 EYVMKNILRMSDEDI----------KTEREKIDG-ELKDSVYKNPEDPMEEF 521 (521) T ss_pred HHHHHHHhcCCHhHH----------HHHHHHHHH-hhhCCCCCCCcchhhcC Confidence 55543 344432110 000000000 00010001111111111 No 231 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=63.80 E-value=0.31 Score=23.37 Aligned_cols=393 Identities=11% Similarity=0.009 Sum_probs=172.3 Q ss_pred CCccchhcccccccccccchH-----------------HHHhhcCCCcccccccC-HHHH-hccHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGW-----------------VSALLGSARSEAGQVVT-PASA-LSLTVLQNCVTLLAESIAQ 61 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~~~-~~~~~v~~~i~~ia~~ia~ 61 (419) |+..++--....+.-++..++ +.++... ...+...+. .+.+ .+-+.+..+...|-+.. T Consensus 1 ~~~~~~~~~~~~~~~~g~~~~p~~v~~~d~~Rl~aY~l~~~~y~n-~~~~~~~~lrg~~~~~~r~~~~ps~~~~~~~~-- 77 (527) T protein:vir:10 1 MGQDKRQYGSTQQLRAGEANFPNAVTDFDKARLASYRLYEDMYLT-NTSDYQVILRGGDEGDQRPIYVPNGEKLIEAK-- 77 (527) T ss_pred CCccccccCCCcCcCCccccCcccCCHHHHHHHHHHHHHHHHhcC-chhheeeecCCccccccceeeehhhHHhhCCc-- Confidence 887655322211111111111 0011111 000111110 0110 01122222222221111 Q ss_pred CCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC---CCceEEEEEecCceeEE Q lcl|Aclame:pro 62 LPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ---DGVIQGLYPLDNEAVTV 138 (419) Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~---~G~~~~l~~~~~~~v~~ 138 (419) ..|.+.. -+-........+..+|+..- ...++.....+...+-+..|.+...+..+. .|.-..+..++|..+.+ T Consensus 78 ~~~~~~g--~~~~~~~~~e~v~~~lr~~~-~~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v~~~DP~~~f~ 154 (527) T protein:vir:10 78 MRFLGQG--LKWEFSKKDAKVDDAIKVLF-DRENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSLHEVDPSTYFP 154 (527) T ss_pred ceeeccC--ccccccchhHHHHHHHHHHH-HHhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceEeecCcceeee Confidence 1111110 00000000112233332211 123455566777888889999988888763 23344555555554443 Q ss_pred EEccce---------------------------------------------eEEEEe----ecc-----------ccc-- Q lcl|Aclame:pro 139 MKGPDL---------------------------------------------KPMYRV----AGA-----------DPL-- 156 (419) Q Consensus 139 ~~~~~~---------------------------------------------~~~~~~----~~~-----------~~~-- 156 (419) ..+.++ ...+.. .+. ..+ T Consensus 155 ~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e~p~~~~~~~~ 234 (527) T protein:vir:10 155 YEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPESPLEPDDIKK 234 (527) T ss_pred eecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccccccchhhhhh Confidence 332211 000000 000 000 Q ss_pred -ccc-------------eEEEecC-CCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhH Q lcl|Aclame:pro 157 -PQR-------------LVHHVRW-MSINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQ 221 (419) Q Consensus 157 -~~~-------------~i~~~~~-~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~ 221 (419) ... .|+|+++ .+.+...|.|-+.-.+..++.......-.....+-+|.|-.+++.-... + .. T Consensus 235 ~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~~~tg~~~v--d-~~ 311 (527) T protein:vir:10 235 LSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFYATDSAPPR--D-SR 311 (527) T ss_pred hcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCceeeecccccc--c-cc Confidence 000 1344443 3456788999988777777776655555555555566665555321111 0 00 Q ss_pred HHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHH Q lcl|Aclame:pro 222 ASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQ 301 (419) Q Consensus 222 ~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~ 301 (419) .. ...- .-..|.++-++++.++..++..+.-..+........+.|+..-++|..-+|..+.++ +.... T Consensus 312 G~-------~~~~---~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~--~~SG~ 379 (527) T protein:vir:10 312 GN-------MVPW---TISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAV--AESGI 379 (527) T ss_pred CC-------cCcc---ccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCc--CcHHH Confidence 00 0000 011345777889999999887776666788889999999999999999998666544 22222 Q ss_pred HHHHHHHHhhHHHHHHHHH-HHhh-------------ccCh-------hhhhhhhhhhhhhhhhhccHHHHHHHHHHHHh Q lcl|Aclame:pro 302 SLQFVIYTLLPWVKRHEQA-KTRD-------------LLLP-------SERKQYFIEYNLAGLLRGDQSSRYAAYAVGRQ 360 (419) Q Consensus 302 ~~~~~~~~i~P~~~~i~~~-l~~~-------------ll~~-------~~~~~~~~~fd~~~~~~~d~~~~~~~~~~~~~ 360 (419) .. .-.+.|++.+.+.. +..+ +|.- ......-+...+...+..|.++..+...+++. T Consensus 380 AL---eL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~tL~~ 456 (527) T protein:vir:10 380 AL---DLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLLQLWE 456 (527) T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHHHHHH Confidence 22 22334444332221 0000 0000 00111122333445678899999999999999 Q ss_pred CCCcCHHHHHHHh----CCCCCCCcc-------eeeeccccccc-cccccccCCCCC--Cccccccchhccc Q lcl|Aclame:pro 361 WGWLSINDIRRLE----NMPPVKGGD-------IYLSPMNMVDA-SKPQPIPMGKTE--PTKAALDEIGRIL 418 (419) Q Consensus 361 ~g~~T~NE~R~~l----Gl~p~~ggD-------~~~~~~n~~~~-~~~~~~~~~~~~--~~~~~~~e~~~~~ 418 (419) +|+++.-=+-++| |.+..+ .+ ...+-+-.+.. ++.+..-....+ +.+.+.--|+.-| T Consensus 457 aGi~S~~tAv~~L~~~~g~eD~E-~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~~d~~~~~~~~ 527 (527) T protein:vir:10 457 AGLIPAKKLTEELSKIMGFELTE-EDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDDQALNGQPL 527 (527) T ss_pred cCchhHHHHHHHHHhccCCCChH-HHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcccccCCCCC Confidence 9999998887777 433221 11 11111111110 111111011111 1111111111222 No 232 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=62.74 E-value=0.33 Score=23.23 Aligned_cols=398 Identities=10% Similarity=0.047 Sum_probs=166.6 Q ss_pred CCccchhccc---------c-cccccccchHH------------H-HhhcCCCccccc-----cc-CHHHHhccHHHHHH Q lcl|Aclame:pro 1 MFFSRQLLSN---------L-GQTQPGSGGWV------------S-ALLGSARSEAGQ-----VV-TPASALSLTVLQNC 51 (419) Q Consensus 1 M~f~~~~~~~---------~-~~~~~~~~~~~------------~-~~~~~~~~~~~~-----~~-~~~~~~~~~~v~~~ 51 (419) |-||.+.-.. . +...|...+.- . .+++......+. -| +....+.+|.|..| T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~A 80 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEVDDA 80 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHHHHhhccchhhH Confidence 5566442211 1 11112211110 0 011111111111 01 12345679999999 Q ss_pred HHHHHHhhccC-----CeeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCC Q lcl|Aclame:pro 52 VTLLAESIAQL-----PVELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDG 123 (419) Q Consensus 52 i~~ia~~ia~~-----~~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G 123 (419) |+.|.+.+.-. |+.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+..- T Consensus 81 v~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fHkiid~k~ 155 (511) T protein:vir:56 81 IQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVS-LLQMRKHGYKWF----RKWYVDSRIYFHKILDKDN 155 (511) T ss_pred HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhhhhcceEEEEEEecccc Confidence 99999876522 2222111111 000001122223332 122344555544 4566779999888666555 Q ss_pred ceEEEEEecCceeEEEEcc-----------ceeEEEEeec------------------ccccccceEEEecCC----CCC Q lcl|Aclame:pro 124 VIQGLYPLDNEAVTVMKGP-----------DLKPMYRVAG------------------ADPLPQRLVHHVRWM----SIN 170 (419) Q Consensus 124 ~~~~l~~~~~~~v~~~~~~-----------~~~~~~~~~~------------------~~~~~~~~i~~~~~~----~~~ 170 (419) -+.+|..++|..++.++.- .++..++... ....+.+.|.+.+.. +.+ T Consensus 156 GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~~ 235 (511) T protein:vir:56 156 NIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCAD 235 (511) T ss_pred ceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccCC Confidence 5899999999998765421 1112222111 012345566555543 234 Q ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc----- Q lcl|Aclame:pro 171 GYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV----- 244 (419) Q Consensus 171 ~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~----- 244 (419) .-+.+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ T Consensus 236 ~g~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk 315 (511) T protein:vir:56 236 DPYIIGYLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTN 315 (511) T ss_pred CCeeeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchh Confidence 44567888888888888877777776666677777778777643 333333444444444444332212222222 Q ss_pred -ee-c----------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccC-c--ccccHHHHHHHHHH Q lcl|Aclame:pro 245 -AL-L----------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELER-A--TFSNIEHQSLQFVI 307 (419) Q Consensus 245 -~v-l----------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~-~--~~sn~e~~~~~~~~ 307 (419) +- + ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-+...+. + +.....+..+.-+. T Consensus 316 ~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiK 392 (511) T protein:vir:56 316 AMSMLEDYYLPRREGSKGTEVSTLPGGQSLGDIE---DVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELK 392 (511) T ss_pred hhhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHH Confidence 11 1 14567766653 233444 4558889999999999998863321 1 21122222222111 Q ss_pred H--HhhH----HHHHHHHHHHhhccC-----hhhhh--hhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhC Q lcl|Aclame:pro 308 Y--TLLP----WVKRHEQAKTRDLLL-----PSERK--QYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLEN 374 (419) Q Consensus 308 ~--~i~P----~~~~i~~~l~~~ll~-----~~~~~--~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lG 374 (419) . -|.- +...+.+-|.++|+. +.+.. ...+.|++..--.-.+...++++...++ .. . - T Consensus 393 F~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~----~l----~--~ 462 (511) T protein:vir:56 393 FTKFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMN----AM----R--D 462 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHH----HH----H--H Confidence 1 1111 111222222222222 11211 1122222211111112222333322221 00 0 1 Q ss_pred CCCCCCcceeeeccccccccccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 375 MPPVKGGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 375 l~p~~ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) ++|. ..+++ +-.++--.-....+..=.+..++=..|.+.-+- T Consensus 463 ~dpy--vGky~-S~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~ 504 (511) T protein:vir:56 463 IQDY--AGKYY-SHKYIQKNILRLSDDQITAMQSEIDEEETNPRF 504 (511) T ss_pred hcch--hcccc-chHHHHHHHhccCHHHHHHHHHHHHHhhcCCCC Confidence 1222 11221 111111100000000000000111111111111 No 233 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=61.38 E-value=0.35 Score=23.05 Aligned_cols=405 Identities=11% Similarity=-0.004 Sum_probs=165.3 Q ss_pred CCccc------------------------hhcc-ccc---ccccccchHHHHhhcCCCcccccccCHHHHhccHHHH--- Q lcl|Aclame:pro 1 MFFSR------------------------QLLS-NLG---QTQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQ--- 49 (419) Q Consensus 1 M~f~~------------------------~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--- 49 (419) |-=-+ .+.+ -.. .++....+|+++++..+.......-+-..++.||+-| T Consensus 1 ~~~~~~~~~~~~t~~k~~~~~e~~~~~~n~~~~~y~ty~~~~~~f~~gfv~~~~~ng~i~~v~~~~l~~~f~npd~~~~~ 80 (525) T protein:vir:10 1 MTRTKGSKNKSTTIEKQSLQIEQLQEHINELERQYNTYDDVVDAFIDGFVMDLCNNGKIKTVNLDTLQLWFNNPDKYINN 80 (525) T ss_pred CCCCcCCcccccchhhhhhhHHHHHHHHhhhhhhcchhhhHHHHHHHHHHHHhhcCCceeeeeHHHHHhhhcChHHHHHH Confidence 22000 0000 011 1223334566666665543332222223334444422 Q ss_pred ------------HHHHHHHHhhccCC---eeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCee Q lcl|Aclame:pro 50 ------------NCVTLLAESIAQLP---VELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSY 114 (419) Q Consensus 50 ------------~~i~~ia~~ia~~~---~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~ 114 (419) .-|..+-.-|-++| +++..-++++.. +.-..+||..-..-.-..++-+.+..++...|.-. T Consensus 81 i~~l~~y~yi~~~~v~ql~~li~~lp~l~y~i~~~~~~k~~----~~~~s~~n~~l~k~i~hk~ltrdll~q~a~~gtli 156 (525) T protein:vir:10 81 IVNLLTYYYIIDGNVFQLYDLIFSLPPLDYQIKVLKRDKDY----KEDLSTINLYLEKKIQHKQLTRDLLVQLAHSGTLI 156 (525) T ss_pred HHHHHHHhhhhcchHHHHHHHHHhcCCcceeehhhhhccch----hhHHHHHHHHHHHhHHHHHHHHHHHHHhhccCcee Confidence 11222223333444 333222222111 11122333222222233344444555555555421 Q ss_pred EEEeecCCCceE-----EEEEe------cCceeEEEE--------c---------------cceeEEE-Eeecc------ Q lcl|Aclame:pro 115 SFIDRDQDGVIQ-----GLYPL------DNEAVTVMK--------G---------------PDLKPMY-RVAGA------ 153 (419) Q Consensus 115 ~~i~~~~~G~~~-----~l~~~------~~~~v~~~~--------~---------------~~~~~~~-~~~~~------ 153 (419) -....+. ..|. ++-++ ....|-+.. + ...+..+ .+.|. T Consensus 157 g~wlg~~-~~py~~vf~~~kyvfp~~r~~g~~v~vid~~~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~~~~~~~~~~~r 235 (525) T protein:vir:10 157 GTWLGSK-REPYFNVFNNLKYVFPYGRAKGKMVAVIDLQWFDEMSELERKLTFENLSPLITENKYKKWKEYNGENEDALR 235 (525) T ss_pred EeeecCC-CCcchhhhhhhhhhccccccCCceEEEEehHHhhhhhHHHHHHHHHhhchhhhhhhhhHHhhcccccchhhe Confidence 1111110 0111 11000 111111110 0 0000000 01111 Q ss_pred -cccccceEEEecCCC--CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCc--hhhHHHHHHHH Q lcl|Aclame:pro 154 -DPLPQRLVHHVRWMS--INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPA--LKDQASVDRIT 228 (419) Q Consensus 154 -~~~~~~~i~~~~~~~--~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~--~~~~~~~~~~~ 228 (419) ..+|-+.++|.|.+. .+..-|.|....+...+.......+...+....=..+-.++++.+.-+. ..-+...+++. T Consensus 236 ~i~LP~e~t~~lr~~tl~rnqrlG~s~vtp~l~dI~hk~klrd~EqsIA~kii~a~avLk~gg~~gn~mk~p~~~kqkil 315 (525) T protein:vir:10 236 YIMLPISKTLVARIHTLSRNQRLGIPYGTQTLFDIQHKQKLRDLEQSIADKIIKAMAVLKFRGKDDNDSKVKESAKRKVL 315 (525) T ss_pred eeecccceeEEeeecccccCcccCcchhhhHHHHHHHHHHHHHHHHHHHHHhhhhheeeeeccccCccccCchHHHHHHH Confidence 124557777877653 4556688888888888888777777666666666777777777543221 11223334444 Q ss_pred HHHHHHhcc-ccccCccee--cCCC--ceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHH Q lcl|Aclame:pro 229 DGWNAKFGG-SGNAKKVAL--LQEG--MKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSL 303 (419) Q Consensus 229 ~~~~~~~~g-~~n~g~~~v--l~~g--~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~ 303 (419) +..+.+... -+...++.+ ++.= ++|-++.....-.+-. --+...++|-.|+|+.-+++++.+ +||+++.-... T Consensus 316 ~gVk~aleK~~kdK~Gi~vi~~Pdfa~~efp~ik~~~~glDg~-K~d~I~~DI~~A~GlS~sL~nGdg-gNyAtaslnld 393 (525) T protein:vir:10 316 AGVKRALEKGVKDKNGIACIAMPDFATFEFPEIKNGDKTLDPK-KYDSIDNDITNATGISQVLTNGTK-GNYASAKLNLD 393 (525) T ss_pred HHHHHHHhcccccccCeEEEeccceeecccccccCcccCCCch-hhhhhhhhhhhhhccceeeecCCC-CceeeeeeeHH Confidence 444433222 222122333 3332 2322332211111111 233456899999999999987654 47888777777 Q ss_pred HHHHHHhhHHHHHHHHHHHhhccChhhh--hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCC--- Q lcl|Aclame:pro 304 QFVIYTLLPWVKRHEQAKTRDLLLPSER--KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPV--- 378 (419) Q Consensus 304 ~~~~~~i~P~~~~i~~~l~~~ll~~~~~--~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~--- 378 (419) .||.. |.=+++.|| +..++|+.-..+ .+..+.|+.+.-...+.+....++-++...|+... -+....|..-- T Consensus 394 ~fykk-igVm~e~Ie-e~y~kL~d~Vl~~~k~~nyifnydkd~pi~~kkk~d~LIkL~d~g~s~k-~vldl~gis~e~y~ 470 (525) T protein:vir:10 394 VFYKK-IGVMLEIIE-EIYNQLIDIILGEEKGCNYIFQYNKDTPIEREKKLDTLIKLEAQGYSAK-YVLDILGISSEEYF 470 (525) T ss_pred HHHHH-HHHHHHHHH-HHHHHHHhhhcCcccCcceEEecCCCchhhhhhhhhhhhhhhccchhhh-hhhhhhccCcchHH Confidence 77765 344566676 556666543322 23344455554455566776667666666555321 12222222211 Q ss_pred CC---------cce---eeeccccccccccccccCCCC------CCccccccchhc Q lcl|Aclame:pro 379 KG---------GDI---YLSPMNMVDASKPQPIPMGKT------EPTKAALDEIGR 416 (419) Q Consensus 379 ~g---------gD~---~~~~~n~~~~~~~~~~~~~~~------~~~~~~~~e~~~ 416 (419) +. .++ .++..++.. +..+..-..+. .++.-...|.|- T Consensus 471 E~s~yEtE~lkl~EKi~pp~~~~v~S-Gk~~n~iG~P~~dd~~~~dati~s~~~~~ 525 (525) T protein:vir:10 471 EESIYEIEKLKLREKIMPPLNTNVLS-GKDGNDIGSPKLDDSDSSDATIESKERGV 525 (525) T ss_pred HHHHHHHHHHHHhhhccccccceeee-ccccccccCCccCCCcchhhhhhhhhcCC Confidence 00 111 111111111 11111110111 111111111111 No 234 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=52.55 E-value=0.55 Score=22.00 Aligned_cols=396 Identities=9% Similarity=0.032 Sum_probs=163.8 Q ss_pred CCccchhcc---------c-ccccccccchHHH--------------HhhcCCCcccccc------c-CHHHHhccHHHH Q lcl|Aclame:pro 1 MFFSRQLLS---------N-LGQTQPGSGGWVS--------------ALLGSARSEAGQV------V-TPASALSLTVLQ 49 (419) Q Consensus 1 M~f~~~~~~---------~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~------~-~~~~~~~~~~v~ 49 (419) |.||-.+.- + .+...|...+.-. .+.+......+.. | .....+.+|.|. T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd 87 (521) T protein:vir:81 8 LARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNHEVE 87 (521) T ss_pred hHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHHhhccchh Confidence 334322111 0 1111122111110 0000000000000 0 123457899999 Q ss_pred HHHHHHHHhhccC-----CeeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC Q lcl|Aclame:pro 50 NCVTLLAESIAQL-----PVELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ 121 (419) Q Consensus 50 ~~i~~ia~~ia~~-----~~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~ 121 (419) .||+.|.+.+.-. |+.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+. T Consensus 88 ~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fhkiid~ 162 (521) T protein:vir:81 88 NAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLN-TIQFDRRGQDMF----RRWYVDSRIFFHKIIGK 162 (521) T ss_pred hHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhhhhcceEEEEEEEcC Confidence 9999999876522 2222111100 000001122223332 122344555544 45667799999887443 Q ss_pred --CCceEEEEEecCceeEEEEccc-----------eeEEEEee--c--------c-------cccccceEEEecCC--CC Q lcl|Aclame:pro 122 --DGVIQGLYPLDNEAVTVMKGPD-----------LKPMYRVA--G--------A-------DPLPQRLVHHVRWM--SI 169 (419) Q Consensus 122 --~G~~~~l~~~~~~~v~~~~~~~-----------~~~~~~~~--~--------~-------~~~~~~~i~~~~~~--~~ 169 (419) ..-+.+|..++|..++.++.-. +...+++. + . ...+.+-|++.+.. +. T Consensus 163 ~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~hSGl~d~ 242 (521) T protein:vir:81 163 NPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYAHSGLMDC 242 (521) T ss_pred CccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCcceeechhheeeeeccceeC Confidence 2348999999999998665321 11111111 1 0 01233444443322 22 Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc---- Q lcl|Aclame:pro 170 NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV---- 244 (419) Q Consensus 170 ~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~---- 244 (419) ++-.-+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ T Consensus 243 ~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddr 322 (521) T protein:vir:81 243 DDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKNQQ 322 (521) T ss_pred CCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccccc Confidence 222235778888888887777777666666667777778877643 322333444444444444311111122221 Q ss_pred --e-ec----------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcc--cccHHHHH---HH Q lcl|Aclame:pro 245 --A-LL----------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERAT--FSNIEHQS---LQ 304 (419) Q Consensus 245 --~-vl----------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~--~sn~e~~~---~~ 304 (419) + .+ ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-++..+.+. .....+.. .. T Consensus 323 k~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiK 399 (521) T protein:vir:81 323 ANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDID---DIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELE 399 (521) T ss_pred cccchhhhhcccccCCCcccceeecccCCCCChHH---HHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHH Confidence 1 11 14567776653 334444 455888999999999999885433222 11111111 12 Q ss_pred HHHH--Hhh-HHHHHHHHHHHhhccC-----hhhhh--h--hhhhhhhhhhhhc-----cHHHHHHHHHHHH--hCCCcC Q lcl|Aclame:pro 305 FVIY--TLL-PWVKRHEQAKTRDLLL-----PSERK--Q--YFIEYNLAGLLRG-----DQSSRYAAYAVGR--QWGWLS 365 (419) Q Consensus 305 ~~~~--~i~-P~~~~i~~~l~~~ll~-----~~~~~--~--~~~~fd~~~~~~~-----d~~~~~~~~~~~~--~~g~~T 365 (419) |... .|+ -+..-+.+-|.++|+. +.+.. . .++.|..|..... -+..|..+++.+- -+..++ T Consensus 400 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s 479 (521) T protein:vir:81 400 FSKFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 2221 111 1222333444444333 22221 1 2233333332110 0123333333321 122335 Q ss_pred HHHHHH-HhCCCCCC--CcceeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 366 INDIRR-LENMPPVK--GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 366 ~NE~R~-~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) .+=+|+ .|.+...+ .-|+.+ ..+...+.- .++++.. ++- T Consensus 480 ~dyi~k~ILr~tDeei~~~~k~I------~~E~~~~~~-~~p~~~~---~~f 521 (521) T protein:vir:81 480 NQTVMRDILKYTDDQMDTEKKQI------EEEANDPRF-KQTPDEI---EDF 521 (521) T ss_pred hHHHHHHHhccCHHHHHHHHHHH------HHHhhCCCC-CCCcccc---cCC Confidence 554443 34443211 001000 000000000 0000000 000 No 235 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=50.45 E-value=0.61 Score=21.76 Aligned_cols=371 Identities=9% Similarity=-0.052 Sum_probs=123.6 Q ss_pred CC----ccc-hhcccccccccccchHHHHhhcCCCcc-------------cccccCHHHHhccHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MF----FSR-QLLSNLGQTQPGSGGWVSALLGSARSE-------------AGQVVTPASALSLTVLQNCVTLLAESIAQL 62 (419) Q Consensus 1 M~----f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~ 62 (419) .+ +|. .....+...... ...++..+.. ....+.+.+. +++--|..+... T Consensus 153 ~~i~kv~we~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~i~~v~p~~~--------~~dp~a~~~~d~ 219 (651) T protein:vir:80 153 NSVLALPWRVETAEVKKKVQVR-----TPLFEDEPTFEVVSEEREVKSSPDFEVLDMFDC--------FYDPNVTDPNRG 219 (651) T ss_pred ceEEEEeecceeeeeehheecc-----ccccccccceeeeccceeeeceeEEEEecHHHe--------eecCCCcCcccc Confidence 11 111 000000000000 0000000000 0011111111 111112222223 Q ss_pred CeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec---------CCCceEEEEEecC Q lcl|Aclame:pro 63 PVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD---------QDGVIQGLYPLDN 133 (419) Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~---------~~G~~~~l~~~~~ 133 (419) ++.+.... ....+..+.....-......+..+....+..-++....-..+. ..-.+.+.|. T Consensus 220 ~~v~~~~~-------t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~v~E~~~--- 289 (651) T protein:vir:80 220 AFIRKLTK-------TKADILNLLSEGYYYGVDPLDVVEHKCKDTSDTKQDMLSTFQGVTTSLWSPHQNVELLEYWG--- 289 (651) T ss_pred ceeeeeee-------eHHHHHHHHhcccccchhhHHHHhhhccccccCCccccccccCCCccccccccceEEEEEEE--- Confidence 33221100 0011111111000000000000110000000000000000000 0001222211 Q ss_pred ceeEEEEccceeEEEEe--ec--------ccccccceEEEecCCCCC-CcccccHHHHHHHHHHHHHHHHHHHHHHHHcc Q lcl|Aclame:pro 134 EAVTVMKGPDLKPMYRV--AG--------ADPLPQRLVHHVRWMSIN-GYTGLSPVLLHANAIGHAQAIQQYAGKSFMNG 202 (419) Q Consensus 134 ~~v~~~~~~~~~~~~~~--~~--------~~~~~~~~i~~~~~~~~~-~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng 202 (419) ....+.++...+.. .+ ..+......+++++.+.. ..||.|+...++........+.+......... T Consensus 290 ---~~d~e~~~~~~~~v~~~g~~il~~~~~~~~~~~Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~ln~l~~~~ld~~~~~ 366 (651) T protein:vir:80 290 ---DIHLENKTYHDVVVTIMGNEVLRFEQNPYWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHELNIITNQRLDNLELA 366 (651) T ss_pred ---EeeccCCceEEEEEEEcCcEEecccccCCCCCCCeeeecceecCccccCCChHHHHhHHHHHHHHHHHHHHHHHHHH Confidence 11111111110000 01 111111234555555443 47999999999999999998888888888877 Q ss_pred CCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecCCCceeeecCcChhhH-HHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 203 TALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDA-ALIDALRLSALDIARIYK 281 (419) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~-~~~e~~~~~~~~Ia~~fg 281 (419) ..|...+..++.. +.+. +. . ..|+++++..+.++.++...+.+. ......+.....+-..+| T Consensus 367 ~~~~~~v~~d~~~----~~~~-------l~---~---~pg~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~g 429 (651) T protein:vir:80 367 IDQMYTLRSDGLL----QPED-------VY---T---EPGKVFLVSDHGDLQPLANQSSNFSITYQESSFLESTIDKNFG 429 (651) T ss_pred hCCcEEecCCccc----cHHH-------hh---c---CCCceEEecCCCCceeeccCcccchhHHHHHHHHHHHHHHHhc Confidence 7788776544322 2222 11 1 124577777777777776533232 234567778888999999 Q ss_pred CCHHHcccccCcc-ccc-HH-HHHHHHHHHHhhHHHHHHHHHHHhhccChhhh--------------------------- Q lcl|Aclame:pro 282 IPAHMVNELERAT-FSN-IE-HQSLQFVIYTLLPWVKRHEQAKTRDLLLPSER--------------------------- 331 (419) Q Consensus 282 vpp~~~g~~~~~~-~sn-~e-~~~~~~~~~~i~P~~~~i~~~l~~~ll~~~~~--------------------------- 331 (419) |+....|....+. ..+ .+ .+...-....+.+++..+.+++..-|+..... T Consensus 430 v~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~~~~~~~i 509 (651) T protein:vir:80 430 TGNYVGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAGAYEYYEL 509 (651) T ss_pred CChHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeeccccccccccccc Confidence 9988877544321 111 12 23334455666677777766544333211000 Q ss_pred --hhhhhhhhhhhhhhccHHH---HHHHHHHHHhCCCcCH------------HHHHHHhCCCCCCCcceeeecccccccc Q lcl|Aclame:pro 332 --KQYFIEYNLAGLLRGDQSS---RYAAYAVGRQWGWLSI------------NDIRRLENMPPVKGGDIYLSPMNMVDAS 394 (419) Q Consensus 332 --~~~~~~fd~~~~~~~d~~~---~~~~~~~~~~~g~~T~------------NE~R~~lGl~p~~ggD~~~~~~n~~~~~ 394 (419) .+....++...+-.....+ ....+...+..+...+ -++.+.+|++ ..+.++.+..-.... T Consensus 510 ~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~~~~g~~---~~~~~l~~~~q~~~~ 586 (651) T protein:vir:80 510 DVEDLQKEVRLVPIGSDHVIERKQYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLLQHWGFE---EPEAYLKQQDQQAPA 586 (651) T ss_pred CccceeeeeeeeeccHHHHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHcCCC---CcHHhcCCCccchhh Confidence 0111111111111001111 1111211222211111 1222334543 223333222111110 Q ss_pred ccccccCCCCCCccccccchhcccC Q lcl|Aclame:pro 395 KPQPIPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 395 ~~~~~~~~~~~~~~~~~~e~~~~~~ 419 (419) .+.+....+.+. .......+.+. T Consensus 587 ~~~~~~~~q~~~--~~~~a~~~~~~ 609 (651) T protein:vir:80 587 NPQEALLSQAKD--VGGQAMSNMLQ 609 (651) T ss_pred hhhHHHHhhHHH--HHHHHHHHHHH Confidence 000000000000 00000000111 No 236 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=40.46 E-value=0.97 Score=20.66 Aligned_cols=368 Identities=13% Similarity=0.064 Sum_probs=150.2 Q ss_pred CCccchhcccccccccccchHHHHhhcCCCc-----------ccccccC-HHHHh----ccHHHHHHHHHHHHhhccCCe Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSGGWVSALLGSARS-----------EAGQVVT-PASAL----SLTVLQNCVTLLAESIAQLPV 64 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~----~~~~v~~~i~~ia~~ia~~~~ 64 (419) |....+-..-....... ..+.++.++... .....-. ...++ -.+++...++.++..+-.-|. T Consensus 1 m~V~~~hp~y~a~~~~W--~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~~n~~~~t~~~~~G~vf~k~p 78 (452) T protein:vir:94 1 MPIETKHPEYLAYENDW--IDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALFYSITSKTLSALSGMVLDQPP 78 (452) T ss_pred CCCCCcCHHHHHHHHHH--HHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccCCchHHHHHHHHhchhhcCCc Confidence 44222111100000000 011122111110 0111000 11122 245566777777766666665 Q ss_pred eEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEE---- Q lcl|Aclame:pro 65 ELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMK---- 140 (419) Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~---- 140 (419) .+. ....+..+.. -....+-.+|.+.++...+.+|.+++++.....|.-.-+..+.|..|--.. T Consensus 79 ~~~----------~p~~l~~~~~--D~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~W~~~~~ 146 (452) T protein:vir:94 79 VIT----------HPDAMSKYFE--DQSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILNWEEDED 146 (452) T ss_pred eec----------ccHHHHHHHh--cccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcCcccccc Confidence 441 0123333322 234667899999999999999999999988776642223333333221000 Q ss_pred ---------------cc-c-----eeEEEE-------------ee-cccc--------c------ccce--EEEecCCCC Q lcl|Aclame:pro 141 ---------------GP-D-----LKPMYR-------------VA-GADP--------L------PQRL--VHHVRWMSI 169 (419) Q Consensus 141 ---------------~~-~-----~~~~~~-------------~~-~~~~--------~------~~~~--i~~~~~~~~ 169 (419) +. + ....|+ +. .... . +-.. ++++...+. T Consensus 147 g~l~~v~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~ 226 (452) T protein:vir:94 147 GRLLMVVLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWELAKTSTIQNVGVTMDYIPFFCITPSGL 226 (452) T ss_pred CCeeEEEEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceeeeccceeecCCCcccceeEEEEEcCCCC Confidence 00 0 000000 00 0000 0 0011 122222223 Q ss_pred CCcccccHHHHHHHH-HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCcceecC Q lcl|Aclame:pro 170 NGYTGLSPVLLHANA-IGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVALLQ 248 (419) Q Consensus 170 ~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~vl~ 248 (419) +...|.||+..++.. +...+...+ ....+...+.|..+++--... . ...-|+ +.++.++ T Consensus 227 ~~~~~~pPLl~LA~ln~~hy~~~sd-~~~~l~~~~~P~l~~~g~~~~------~----------~i~iG~---~~~~~lp 286 (452) T protein:vir:94 227 SMTPAKPPMIDIVDINYSHYRTSAD-LEHGRHFTGLPTPWITGAESQ------S----------TMHIGS---TKAWVIP 286 (452) T ss_pred CCCCCccchHHHHHHHHHHhcchhH-HHHHHHHcccceeEeecCcCC------C----------ceEecc---cccccCC Confidence 344678887654443 333333444 444555667777666532110 0 122344 3357777 Q ss_pred C-Cc--eeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHH--HHHHHHHHhhHHHHHHHHHHHh Q lcl|Aclame:pro 249 E-GM--KFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQ--SLQFVIYTLLPWVKRHEQAKTR 323 (419) Q Consensus 249 ~-g~--~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~--~~~~~~~~i~P~~~~i~~~l~~ 323 (419) + |. .|.+.+.++.... .+..+...+++.. .|- .++-..... ..+.+.. ...-....|.-++..++++++. T Consensus 287 e~~~~~~yie~~g~~i~~~-~~~l~~le~~m~~-~Ga--~ll~~~~~~-~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~ 361 (452) T protein:vir:94 287 EVAAKVGFLEFTGQGLQSL-EKALSEKQAQLAS-LSA--RLIDNSTRG-SEATETVKLRYMSETASLKSVTRAVEALLNK 361 (452) T ss_pred CCCCcceEEccCchhHHHH-HHHHHHHHHHHHH-HHH--HhhccCCCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHH Confidence 4 64 5556555554432 2223333333322 121 222111111 1122222 2222345666677777777754 Q ss_pred hcc--Chhhhh--hhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHh---CCCCCCCcceeeecccccccccc Q lcl|Aclame:pro 324 DLL--LPSERK--QYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLE---NMPPVKGGDIYLSPMNMVDASKP 396 (419) Q Consensus 324 ~ll--~~~~~~--~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~l---Gl~p~~ggD~~~~~~n~~~~~~~ 396 (419) .|= ....+. ...+..+.+-..........+.+-+++.+|.++....++.| |....+.-+.... .+...+ T Consensus 362 ~l~~~a~w~g~~~~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i~----~E~~~~ 437 (452) T protein:vir:94 362 AYSCIMDMESMGGTLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGVI----PDPPAP 437 (452) T ss_pred HHHHHHHHcCCCCceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHHH----HHhhcc Confidence 421 111122 22333333322222223445555568899999999998887 4433221110000 011111 Q ss_pred ccccCCCCCCccccccch Q lcl|Aclame:pro 397 QPIPMGKTEPTKAALDEI 414 (419) Q Consensus 397 ~~~~~~~~~~~~~~~~e~ 414 (419) ++.+.+.+. ++.++. T Consensus 438 ~~~~~~~~~---~~~~~~ 452 (452) T protein:vir:94 438 EPSPSNTPP---NPSSKA 452 (452) T ss_pred CcccCCCCC---CCccCC Confidence 111111111 111222 No 237 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=33.79 E-value=1.3 Score=19.90 Aligned_cols=396 Identities=9% Similarity=0.026 Sum_probs=164.8 Q ss_pred CCccchhcc---------c-ccccccccchH----HHHhhcCCCccc-----------ccc------c-CHHHHhccHHH Q lcl|Aclame:pro 1 MFFSRQLLS---------N-LGQTQPGSGGW----VSALLGSARSEA-----------GQV------V-TPASALSLTVL 48 (419) Q Consensus 1 M~f~~~~~~---------~-~~~~~~~~~~~----~~~~~~~~~~~~-----------~~~------~-~~~~~~~~~~v 48 (419) ++||-+... . .+...|...+. ......+...+. +.. | +....+.+|.| T Consensus 9 f~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma~~pEv 88 (523) T protein:vir:68 9 FAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYRNLMTNYEV 88 (523) T ss_pred hhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHHHHhhccch Confidence 334432111 1 11122222221 111111110000 000 0 12345789999 Q ss_pred HHHHHHHHHhhccCC-----eeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeec Q lcl|Aclame:pro 49 QNCVTLLAESIAQLP-----VELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRD 120 (419) Q Consensus 49 ~~~i~~ia~~ia~~~-----~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~ 120 (419) ..||+.|.+.+.-.. +.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+ T Consensus 89 d~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fhKiid 163 (523) T protein:vir:68 89 DNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLN-HLSFQRKGSDHF----RRWYVDSRIFFHKIID 163 (523) T ss_pred hhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHH-HhccchhhhHHH----HhheeeeEEEEEEEee Confidence 999999998764322 222111000 000001122233332 122344555544 4566779999887544 Q ss_pred CC---CceEEEEEecCceeEEEEcc-----ce------eEEEEeec----------c-------cccccceEEEecCC-- Q lcl|Aclame:pro 121 QD---GVIQGLYPLDNEAVTVMKGP-----DL------KPMYRVAG----------A-------DPLPQRLVHHVRWM-- 167 (419) Q Consensus 121 ~~---G~~~~l~~~~~~~v~~~~~~-----~~------~~~~~~~~----------~-------~~~~~~~i~~~~~~-- 167 (419) .. .-+.+|..++|..|+.++.. .+ +..+++.+ . ...+.+-|++.+.. T Consensus 164 ~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL~ 243 (523) T protein:vir:68 164 PKRPKEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIPKAAIVYAHSGLV 243 (523) T ss_pred CCCccccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcceecchhheeeeeccce Confidence 22 23889999999999764321 11 11111111 0 11234455555432 Q ss_pred CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc-- Q lcl|Aclame:pro 168 SINGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV-- 244 (419) Q Consensus 168 ~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~-- 244 (419) +.++-.-+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ T Consensus 244 d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~d 323 (523) T protein:vir:68 244 DCCGKNIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYDATTGKIKN 323 (523) T ss_pred eCCCCceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEeccCCeecc Confidence 22332335667888888877777777666666667777777777643 332333444444444444322111122221 Q ss_pred ----ee-c----------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHccccc-CcccccHHHHHH--- Q lcl|Aclame:pro 245 ----AL-L----------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELE-RATFSNIEHQSL--- 303 (419) Q Consensus 245 ----~v-l----------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~-~~~~sn~e~~~~--- 303 (419) +- + ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-+...+ +-+.....+..+ T Consensus 324 drk~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EItRDEi 400 (523) T protein:vir:68 324 QQHIMSMTEDYWLQRRDGKAVTEVDTLPGADNTGNME---DVRWFRNALYMALRIPITRIPSDQGGIQFDAGTSITRDEL 400 (523) T ss_pred chhhhhhHhhhcccccCCCcccceeeccccCCcChHH---HHHHHHHHHHHHhCCcceeecCCCcceecccccchhHHHH Confidence 11 1 14567766653 333444 455888999999999998774332 223211112211 Q ss_pred HHHHH--Hhh-HHHHHHHHHHHhhccC-----hhhhh----hhhhhhhhhhhhhc-----cHHHHHHHHHHHH--hCCCc Q lcl|Aclame:pro 304 QFVIY--TLL-PWVKRHEQAKTRDLLL-----PSERK----QYFIEYNLAGLLRG-----DQSSRYAAYAVGR--QWGWL 364 (419) Q Consensus 304 ~~~~~--~i~-P~~~~i~~~l~~~ll~-----~~~~~----~~~~~fd~~~~~~~-----d~~~~~~~~~~~~--~~g~~ 364 (419) .|... .|+ -+...+.+-|.++|+. +.+.. ..++.|..|..... -+..|..+++.+- -+..+ T Consensus 401 kF~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~ 480 (523) T protein:vir:68 401 SFGKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEPFIGKYI 480 (523) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 12211 111 1222233334444332 23322 22333333332110 0123333333321 12234 Q ss_pred CHHHHHH-HhCCCCCC--CcceeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 365 SINDIRR-LENMPPVK--GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 365 T~NE~R~-~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) +.+=+|+ .|.+...+ .-|+.+ ....+... -.+.++..++- T Consensus 481 s~~yi~k~ILr~tDeei~~~~kqI--------~~E~k~~~--~~~p~~e~~~f 523 (523) T protein:vir:68 481 SHRTAMKDILQMSDEEIEQEAKQI--------EEESKEAR--FQDPDQEQEDF 523 (523) T ss_pred hhHHHHHHHhccCHHHHHHHHHHH--------HHHhhcCC--CCCCchhhhcC Confidence 5554543 35544321 111100 00000000 00000000111 No 238 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=33.59 E-value=1.3 Score=19.88 Aligned_cols=386 Identities=12% Similarity=0.036 Sum_probs=146.8 Q ss_pred CCccchhcccccccccccc----h--HHHHhhcCCCc-cc--------ccccC---HHH----HhccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPGSG----G--WVSALLGSARS-EA--------GQVVT---PAS----ALSLTVLQNCVTLLAES 58 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~-~~--------~~~~~---~~~----~~~~~~v~~~i~~ia~~ 58 (419) |---..-...-....|.-. . .+.++.++... .. ..... ... +.-.+++...++.++.. T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~~~~~r~~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l~G~ 80 (489) T protein:vir:78 1 MLTENGQGSGVKTKHREWLHYAPKWQKVRHALAGELVSYLRNVGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGMVGS 80 (489) T ss_pred CccCCCccCCCCccCHHHHHHHHHHHHHHHHhcCcccccccCCCCCCCCCCCChHHHHHHHhccccCChHHHHHHHHhch Confidence 2211100000000000000 0 01122222100 00 00000 111 11234555666666666 Q ss_pred hccCCeeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCc-----------eEE Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGV-----------IQG 127 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~-----------~~~ 127 (419) +..-|..+. ....+..++.+---...+-.+|.+.++...+.+|.+++++.....|. -.. T Consensus 81 vfrk~p~~~----------~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rPy 150 (489) T protein:vir:78 81 VMRKEPEIN----------IPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNPT 150 (489) T ss_pred hhcCCccee----------ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCcE Confidence 555554431 12345566654444566778999999999999999999998765542 112 Q ss_pred EEEecCceeEEEE----cc-------------------ce-----eEEEEe--e----------------ccccc----- Q lcl|Aclame:pro 128 LYPLDNEAVTVMK----GP-------------------DL-----KPMYRV--A----------------GADPL----- 156 (419) Q Consensus 128 l~~~~~~~v~~~~----~~-------------------~~-----~~~~~~--~----------------~~~~~----- 156 (419) +..+.|..|--+. +. +. ...|++ . +.... T Consensus 151 ~~~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~~~~~~ 230 (489) T protein:vir:78 151 IAFYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQEDVVEI 230 (489) T ss_pred EEEechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccceeeEE Confidence 3333333331000 00 00 000000 0 00000 Q ss_pred -------ccce--EEEecCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHH Q lcl|Aclame:pro 157 -------PQRL--VHHVRWMSINGYTGLSPVLLHANA-IGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDR 226 (419) Q Consensus 157 -------~~~~--i~~~~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~ 226 (419) +-.. ++++.....+...|.+|+..++.. +...+...+ ....+-..+.|..+++--... +++.... T Consensus 231 ~~~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd-~~~~l~~~~~P~l~i~G~d~~----~~~~~~~ 305 (489) T protein:vir:78 231 YPDLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSAD-NEESSFVVGQPTLFIYPGENL----TPQAFKE 305 (489) T ss_pred eccCCCCccCeeeEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhH-HHHHHHHcccceeeeecCccC----Ccccccc Confidence 0000 111111122233567776544433 333344444 445555667787777632111 1121111 Q ss_pred HHHHHHHHhccccccCcceecCCCceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHHHH Q lcl|Aclame:pro 227 ITDGWNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFV 306 (419) Q Consensus 227 ~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~~~ 306 (419) ... .....|+ ...+.++.+.++.-+...++.+. .+..+....+.+ .+-..++. ..+...+........-- T Consensus 306 ~~~--~~i~~g~---~~~~~lp~~~~~~~ie~~~~~~~-r~~l~~le~qm~---~lGa~l~~-~~~~~Ta~~~~~~~~~~ 375 (489) T protein:vir:78 306 ANP--NGIKFGS---RRGHNLGYGGSAQLIQAGENNLA-RQNMLDKEQQAI---QIGAQLIT-PTQQITAQSARIQRGAD 375 (489) T ss_pred cCc--cceeeCC---cccccCCCCCCcceeccCcchHH-HHHHHHHHHHHH---HHhhhhcc-CCcchhHHHHHHHHHHh Confidence 110 0112232 23456666655444444444442 222222222322 22223332 11111111222233334 Q ss_pred HHHhhHHHHHHHHHHHhhcc--Chhhh----hhhhhhhhhhh-hhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 307 IYTLLPWVKRHEQAKTRDLL--LPSER----KQYFIEYNLAG-LLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVK 379 (419) Q Consensus 307 ~~~i~P~~~~i~~~l~~~ll--~~~~~----~~~~~~fd~~~-~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ 379 (419) ...|.-++..++++++..|- ....+ ....+..+.+- ....|.+ ....+-.++.+|.++....++.|-.--+. T Consensus 376 ~S~L~~~a~~~e~al~~~l~~~a~w~G~~~~~~~~i~~n~dF~~~~~d~~-~~~al~~~~~~G~is~~t~~~~L~~~gv~ 454 (489) T protein:vir:78 376 TSVMATIARNVSQAYTDALRWVAVMLGKPEDTEVEFRLNMDFFLEPMTAQ-DRAAWMADINAGLLPATAYYAALRKAGVT 454 (489) T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceEEEeecccCcccCCHH-HHHHHHHHHhcCCCCHHHHHHHHHhCCCC Confidence 55566677777777776531 11111 11122222221 1222333 34445567889999988888776443221 Q ss_pred -Ccce-eeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 380 -GGDI-YLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 380 -ggD~-~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) .-++ ...-..-.++......+..-++..++ .|. T Consensus 455 d~~~e~~~~ei~~~~~~~~~~~~g~~~~~~q~--~~~ 489 (489) T protein:vir:78 455 DWTDADIKDAVADQPLPVATEVQGEIPQSAQQ--QEK 489 (489) T ss_pred CccHHHHHHHHhhcCCCcccCCcccCCCCccc--ccC Confidence 1110 00000001111111111001111111 111 No 239 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=32.91 E-value=1.4 Score=19.80 Aligned_cols=396 Identities=12% Similarity=0.059 Sum_probs=166.0 Q ss_pred CCccchhcc---------cc-cccccccchHHH----------------HhhcCCCcc-cc--ccc-CHHHHhccHHHHH Q lcl|Aclame:pro 1 MFFSRQLLS---------NL-GQTQPGSGGWVS----------------ALLGSARSE-AG--QVV-TPASALSLTVLQN 50 (419) Q Consensus 1 M~f~~~~~~---------~~-~~~~~~~~~~~~----------------~~~~~~~~~-~~--~~~-~~~~~~~~~~v~~ 50 (419) ++||-+... +. +...|...+.-. .+++..... .. .-| +....+.+|.|.. T Consensus 11 f~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR~ma~~pEvd~ 90 (524) T protein:vir:10 11 LKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYRNLMNNYEVDN 90 (524) T ss_pred hhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHHHHhhccchhh Confidence 446532111 11 111121111000 111111000 00 000 1234578999999 Q ss_pred HHHHHHHhhccC-----CeeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC- Q lcl|Aclame:pro 51 CVTLLAESIAQL-----PVELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ- 121 (419) Q Consensus 51 ~i~~ia~~ia~~-----~~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~- 121 (419) ||+.|.+.+.-. |+.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+. T Consensus 91 Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fHkiid~~ 165 (524) T protein:vir:10 91 AVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFSEVLN-LLNFQRKGTDHF----QRWYVDSRIFFHKIINPK 165 (524) T ss_pred HHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhheeeceEEEEEEeeCC Confidence 999999876422 2222111111 000001122223332 122344555544 45667799998875442 Q ss_pred --CCceEEEEEecCceeEEEEcc-----ce------eEEEEeec-----------------ccccccceEEEecCC--CC Q lcl|Aclame:pro 122 --DGVIQGLYPLDNEAVTVMKGP-----DL------KPMYRVAG-----------------ADPLPQRLVHHVRWM--SI 169 (419) Q Consensus 122 --~G~~~~l~~~~~~~v~~~~~~-----~~------~~~~~~~~-----------------~~~~~~~~i~~~~~~--~~ 169 (419) ..-+.+|..++|..++.++.- ++ +..++..+ ....+.+-|.|.... +. T Consensus 166 ~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAIvy~~SGL~d~ 245 (524) T protein:vir:10 166 KMKDGVQELRRLDPRQVQYIREIVTRMEDGVKIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAVVYAHSGLLDC 245 (524) T ss_pred CccccceeeeeeCCccceeeeeecccCcccchhhcchhhheeecCCCcccccCcceecCCcceecchhheeeeccCcccC Confidence 223899999999999764321 11 11111111 012345566666543 22 Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc---- Q lcl|Aclame:pro 170 NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV---- 244 (419) Q Consensus 170 ~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~---- 244 (419) ++-.=+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ T Consensus 246 ~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYDa~TGev~ddr 325 (524) T protein:vir:10 246 CGKNIIGYLQRAIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYDASTGKIKNQQ 325 (524) T ss_pred CCCceeccchHhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeccCCeeccch Confidence 332335667888888887777777666666667777777777643 322333444444444443322111112221 Q ss_pred --ee-c----------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCc--ccccHHHHHH---H Q lcl|Aclame:pro 245 --AL-L----------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERA--TFSNIEHQSL---Q 304 (419) Q Consensus 245 --~v-l----------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~--~~sn~e~~~~---~ 304 (419) +- + ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-++..+.+ +.....+..+ . T Consensus 326 k~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~EItRDEiK 402 (524) T protein:vir:10 326 HNMSMTEDYWLQRRDGKAVTEVDTMPGATGMSDMD---DVLYFRTALYRALRIPESRIPSESNSGVMFDAGTAITRDELK 402 (524) T ss_pred hhhhhHhhhcccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCchhccCCCCccccccccchhhHHHHH Confidence 11 1 14567766653 233444 45588899999999999988543321 2222222222 1 Q ss_pred HHHH--Hhh-HHHHHHHHHHHhhccC-----hhhhhh--hhh--hhhhhhhhhc-----cHHHHHHHHHHHH--hCCCcC Q lcl|Aclame:pro 305 FVIY--TLL-PWVKRHEQAKTRDLLL-----PSERKQ--YFI--EYNLAGLLRG-----DQSSRYAAYAVGR--QWGWLS 365 (419) Q Consensus 305 ~~~~--~i~-P~~~~i~~~l~~~ll~-----~~~~~~--~~~--~fd~~~~~~~-----d~~~~~~~~~~~~--~~g~~T 365 (419) |... .|+ -+..-+.+-|.++|+. +.+... ..+ .|..|..... -+..|..+++.+- -+..++ T Consensus 403 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s 482 (524) T protein:vir:10 403 FAKWIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAEPFIGKYIS 482 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccch Confidence 2211 111 1222233334444332 233221 233 3333332110 0123333333321 122345 Q ss_pred HHHHHH-HhCCCCCC--CcceeeeccccccccccccccCCCCCCccccccch Q lcl|Aclame:pro 366 INDIRR-LENMPPVK--GGDIYLSPMNMVDASKPQPIPMGKTEPTKAALDEI 414 (419) Q Consensus 366 ~NE~R~-~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~e~ 414 (419) .+=+|+ .|.+...+ .-|+.+ ....+... -.+.+++.++- T Consensus 483 ~~yi~k~ILr~tDeei~~~~k~I--------~~E~k~~~--~~~~~~~~~~f 524 (524) T protein:vir:10 483 HQTAMKDFLQMTDEEINQEAKQI--------EEESKEAR--FQNPDEEEEDF 524 (524) T ss_pred hHHHHHHHhccCHHHHHHHHHHH--------HHHhhcCC--CCCCChhhhcC Confidence 554543 35544321 111100 00000000 00000000111 No 240 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=29.88 E-value=1.6 Score=19.43 Aligned_cols=408 Identities=13% Similarity=0.088 Sum_probs=167.3 Q ss_pred CC----cc--chhcccccc--cccccchHHHHh-----hcCCCcccccc------c-CHHHHhccHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MF----FS--RQLLSNLGQ--TQPGSGGWVSAL-----LGSARSEAGQV------V-TPASALSLTVLQNCVTLLAESIA 60 (419) Q Consensus 1 M~----f~--~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~------~-~~~~~~~~~~v~~~i~~ia~~ia 60 (419) |. |. +..++.+.. ..+...+.-..+ .+......+.. | +....+.+|.|..||+.|.+.+. T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneai 80 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYGYTVDFDGQVRNEYQLISRYREMVLQPECDSAVDDIVNETI 80 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecccccceeeecccccchHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 43 32 111111111 111111111111 11111111111 0 12445679999999999998765 Q ss_pred cCC-----eeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC---CCceEEEE Q lcl|Aclame:pro 61 QLP-----VELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ---DGVIQGLY 129 (419) Q Consensus 61 ~~~-----~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~---~G~~~~l~ 129 (419) -.. +.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+. ..-+.+|. T Consensus 81 v~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~-ll~F~~~~~e~f----R~WYVDgRi~fHkiid~~~pk~GI~ELr 155 (533) T protein:vir:10 81 CGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILR-LLDFENRSYEIF----RRWYVDGRLFYHKVIDPDNPQGGLIELR 155 (533) T ss_pred eecCCCceEEEEecccccchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhhhhcceEEEEEEecCCCccccceeee Confidence 222 222111100 000001122223332 122344555544 45667799998875442 23488999 Q ss_pred EecCceeEEEEcc-----ce-------------eEEEEeecc----------cccccceEEEecCC--CCCCcccccHHH Q lcl|Aclame:pro 130 PLDNEAVTVMKGP-----DL-------------KPMYRVAGA----------DPLPQRLVHHVRWM--SINGYTGLSPVL 179 (419) Q Consensus 130 ~~~~~~v~~~~~~-----~~-------------~~~~~~~~~----------~~~~~~~i~~~~~~--~~~~~~G~s~~~ 179 (419) .++|..++.++.- ++ ...|+..+. ...+.+-|++.+.. +.++-.-+|-+. T Consensus 156 ~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~dAI~y~hSGl~d~~~~~i~syLh 235 (533) T protein:vir:10 156 YIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAPDSICYVHSGIMDLNKNMTLSHLH 235 (533) T ss_pred eccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecchhheeeeeccceeCCCCceeccch Confidence 9999999874421 11 111111111 11344445444432 222223357788 Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc------e-ec---- Q lcl|Aclame:pro 180 LHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV------A-LL---- 247 (419) Q Consensus 180 ~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~------~-vl---- 247 (419) .+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ + .+ T Consensus 236 kAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyW 315 (533) T protein:vir:10 236 KAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFW 315 (533) T ss_pred HhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhhc Confidence 88888887777777666666667777777777643 332333444444444444332212122222 1 11 Q ss_pred ------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHHHHHHH---HHHH--Hhh-HH Q lcl|Aclame:pro 248 ------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQ---FVIY--TLL-PW 313 (419) Q Consensus 248 ------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e~~~~~---~~~~--~i~-P~ 313 (419) ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-+...++-+.....+..+. |... .|+ -+ T Consensus 316 LPRReGgrgTEItTLpGgqnLgem~---DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rF 392 (533) T protein:vir:10 316 LPRREGGRGTEITTLPGGQNLGELE---DVKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQKFVARLRKRF 392 (533) T ss_pred ccccCCCCccceeeccccCCcChHH---HHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHH Confidence 14567766653 233444 4558889999999999998865443333222222221 2211 111 12 Q ss_pred HHHHHHHHHhhccC-----hhhhh----hhhhhhhhhhhhhc-----cHHHHHHHHHHH--HhCCCcCHHHHHH-HhCCC Q lcl|Aclame:pro 314 VKRHEQAKTRDLLL-----PSERK----QYFIEYNLAGLLRG-----DQSSRYAAYAVG--RQWGWLSINDIRR-LENMP 376 (419) Q Consensus 314 ~~~i~~~l~~~ll~-----~~~~~----~~~~~fd~~~~~~~-----d~~~~~~~~~~~--~~~g~~T~NE~R~-~lGl~ 376 (419) ...+.+-|.++|+. +.+.. ..++.|..|..... -+..|..+++.+ +-+..++.+=+|+ .|.+. T Consensus 393 s~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~t 472 (533) T protein:vir:10 393 SELFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQT 472 (533) T ss_pred HHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccC Confidence 22233333444332 22322 22333333332110 012333333332 1112234443332 23322 Q ss_pred C------------------CCCcceeeeccccc---cccccccccCCCCCCccccccchhccc Q lcl|Aclame:pro 377 P------------------VKGGDIYLSPMNMV---DASKPQPIPMGKTEPTKAALDEIGRIL 418 (419) Q Consensus 377 p------------------~~ggD~~~~~~n~~---~~~~~~~~~~~~~~~~~~~~~e~~~~~ 418 (419) . ++.-+.-..|.+-. +.+.....+. .++...++.|..--+ T Consensus 473 Deei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 533 (533) T protein:vir:10 473 DVEMKEIDKQIESEMESGIIADPAAEMDPAMAAGDPDAGGAPAEEV--APEGPDPSDERKAEF 533 (533) T ss_pred HHHHHHHHHHHHHHHhCCCCCCCcchhhHHhcCCCCCcCCcccccC--CCCCCCcchhhccCC Confidence 1 11100001111000 0110010100 111112222222222 No 241 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=29.05 E-value=1.7 Score=19.33 Aligned_cols=395 Identities=10% Similarity=0.033 Sum_probs=164.8 Q ss_pred CCccchhcc---------cc-cccccccchHHH--------------HhhcCCCcccccc------c-CHHHHhccHHHH Q lcl|Aclame:pro 1 MFFSRQLLS---------NL-GQTQPGSGGWVS--------------ALLGSARSEAGQV------V-TPASALSLTVLQ 49 (419) Q Consensus 1 M~f~~~~~~---------~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~~------~-~~~~~~~~~~v~ 49 (419) |-||.+... +. +...|...+.-. .+++......+.. | .....+.+|.|. T Consensus 8 ~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd 87 (521) T protein:vir:65 8 LARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNHEVE 87 (521) T ss_pred hhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHHHhhccchh Confidence 334432211 11 111121111111 1111110000000 0 123356799999 Q ss_pred HHHHHHHHhhccC-----CeeEeeecCC---cceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecC Q lcl|Aclame:pro 50 NCVTLLAESIAQL-----PVELYERSGD---DRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQ 121 (419) Q Consensus 50 ~~i~~ia~~ia~~-----~~~~~~~~~~---~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~ 121 (419) .||+.|.+.+.-. |+.+--.+-+ .......+.+.++|+ --+....+++++ ..|...|..|..++-+. T Consensus 88 ~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~~~~f----R~WYVDgRi~fhkiid~ 162 (521) T protein:vir:65 88 NAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLN-TIQFDRRGQDMF----RRWYVDSRIFFHKIIGK 162 (521) T ss_pred hHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-HhccchhhhHHH----hhhhhcceeEEEEEEcC Confidence 9999999876522 2222111100 000001122223332 122344555544 45667799999887443 Q ss_pred --CCceEEEEEecCceeEEEEccc-----------eeEEEEee----------cc-------cccccceEEEecCC--CC Q lcl|Aclame:pro 122 --DGVIQGLYPLDNEAVTVMKGPD-----------LKPMYRVA----------GA-------DPLPQRLVHHVRWM--SI 169 (419) Q Consensus 122 --~G~~~~l~~~~~~~v~~~~~~~-----------~~~~~~~~----------~~-------~~~~~~~i~~~~~~--~~ 169 (419) ..-+.+|..++|..++.++.-. +...+++. +. ...+.+-|++.+.. +. T Consensus 163 ~pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~hSGl~d~ 242 (521) T protein:vir:65 163 NPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYAHSGLMDC 242 (521) T ss_pred CccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceeecCCcceeechhheeeeeccceeC Confidence 2348999999999998665311 11111111 11 01233444443322 22 Q ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCC-CCchhhHHHHHHHHHHHHHHhccccccCcc---- Q lcl|Aclame:pro 170 NGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTD-APALKDQASVDRITDGWNAKFGGSGNAKKV---- 244 (419) Q Consensus 170 ~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~---- 244 (419) ++-.-+|-+..+.+.++...-+.+...-+=-..+.-+-++.++-+ ++..+.++-+..+...++++.-=....|.+ T Consensus 243 ~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ddr 322 (521) T protein:vir:65 243 DDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKNQQ 322 (521) T ss_pred CCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccccc Confidence 332335778888888887777777666666677777778877643 322333444444444444311111122221 Q ss_pred --e-ec----------CCCceeeecCc--ChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcc--cccHHHHH---HH Q lcl|Aclame:pro 245 --A-LL----------QEGMKFKPLSM--TNVDAALIDALRLSALDIARIYKIPAHMVNELERAT--FSNIEHQS---LQ 304 (419) Q Consensus 245 --~-vl----------~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~--~sn~e~~~---~~ 304 (419) + .+ ..|.+++.|.. +.-+|+ -.++..+.+..+++||.+-++..+.+. .....+.. .. T Consensus 323 k~msMlEDyWLpRReGgrgTEItTLpGgqnlgem~---DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEiK 399 (521) T protein:vir:65 323 ANLSMTEDYWLQRRDGKAITDVTTLPGASGMSDID---DIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELE 399 (521) T ss_pred cccchhhhhcccccCCCCccceeecccCCCcChHH---HHHHHHHHHHHHhCCCceeccCCCCcceeccccchhhHHHHH Confidence 1 11 14567776653 334444 455888999999999998875433222 11111211 12 Q ss_pred HHHH--Hhh-HHHHHHHHHHHhhccC-----hhhhh--h--hhhhhhhhhhhhc-----cHHHHHHHHHHHH--hCCCcC Q lcl|Aclame:pro 305 FVIY--TLL-PWVKRHEQAKTRDLLL-----PSERK--Q--YFIEYNLAGLLRG-----DQSSRYAAYAVGR--QWGWLS 365 (419) Q Consensus 305 ~~~~--~i~-P~~~~i~~~l~~~ll~-----~~~~~--~--~~~~fd~~~~~~~-----d~~~~~~~~~~~~--~~g~~T 365 (419) |... .|+ -+..-+.+-|.++|+. +.+.. . ..+.|..|..... -+..|..+++.+- -+..++ T Consensus 400 F~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~S 479 (521) T protein:vir:65 400 FSKFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFS 479 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccc Confidence 2221 111 1222333344444333 22221 1 2233333332110 1123333333321 122345 Q ss_pred HHHHHH-HhCCCCCC--CcceeeeccccccccccccccCC-CCCCccccccch Q lcl|Aclame:pro 366 INDIRR-LENMPPVK--GGDIYLSPMNMVDASKPQPIPMG-KTEPTKAALDEI 414 (419) Q Consensus 366 ~NE~R~-~lGl~p~~--ggD~~~~~~n~~~~~~~~~~~~~-~~~~~~~~~~e~ 414 (419) .+=+|+ .|.+...+ .-|+.+ ....+...- ++++.. ++- T Consensus 480 ~dyi~k~ILr~tDeei~~~~k~I--------~~E~~~~~~~~p~~~~---~~f 521 (521) T protein:vir:65 480 NQTVMRDILKYTDDQMDTEKKQI--------EEEANDPRFKQTPDEI---EDF 521 (521) T ss_pred hHHHHHHHhccCHHHHHHHHHHH--------HHhhhCCCCCCCcccc---cCC Confidence 555543 34444311 011000 000000000 000000 000 No 242 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=26.79 E-value=1.9 Score=19.04 Aligned_cols=384 Identities=15% Similarity=0.028 Sum_probs=145.2 Q ss_pred CCccchhcccccccccc----cch--HHHHhhcCC--------------Cccccccc--CHHHHhccHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MFFSRQLLSNLGQTQPG----SGG--WVSALLGSA--------------RSEAGQVV--TPASALSLTVLQNCVTLLAES 58 (419) Q Consensus 1 M~f~~~~~~~~~~~~~~----~~~--~~~~~~~~~--------------~~~~~~~~--~~~~~~~~~~v~~~i~~ia~~ 58 (419) |- .+-...-....+. ... .+.++.++. +..+...+ ....+.-.+++...++.++.. T Consensus 1 m~--~~~~~~v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~ 78 (513) T protein:vir:97 1 MA--DKDPKSPATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRHQEETDKGYQERLASAVLLNMVEQTLDTLSGK 78 (513) T ss_pred CC--CCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCCCCCCHHHHHHHHhcccCCChHHHHHHHHhhh Confidence 32 1110111111110 000 111222111 11111000 011122345566666666666 Q ss_pred hccCCeeEeeecCCcceeeccchHHH-HhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCce------------ Q lcl|Aclame:pro 59 IAQLPVELYERSGDDRKPATDHPLYS-ILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVI------------ 125 (419) Q Consensus 59 ia~~~~~~~~~~~~~~~~~~~~~~~~-lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~------------ 125 (419) +.+-|..+.. .....+.. ++.+---...+-.+|.+.++...+.+|.+++++.....+.+ T Consensus 79 vf~k~p~~~~--------~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~ 150 (513) T protein:vir:97 79 PFSEPIKLNE--------DVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDR 150 (513) T ss_pred hhhcCcccCc--------CchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHH Confidence 6555544310 11123443 33333334567789999999999999999999976543321 Q ss_pred -----EEEEEecCceeEEEE--------------------ccce-----eEEEEee--cc-------------------- Q lcl|Aclame:pro 126 -----QGLYPLDNEAVTVMK--------------------GPDL-----KPMYRVA--GA-------------------- 153 (419) Q Consensus 126 -----~~l~~~~~~~v~~~~--------------------~~~~-----~~~~~~~--~~-------------------- 153 (419) -.+..+.|..|--+. ..++ +..++.. +. T Consensus 151 ~~~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~g~~~v~r~~~~~~~~~~e~~~~ 230 (513) T protein:vir:97 151 REGLRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEPGLVQLWEPVKKSNAQKEEWALA 230 (513) T ss_pred hhccCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeCceEEEEEeecCCCccccceEEe Confidence 123333333331000 0010 0001000 00 Q ss_pred ----cccccceEEEecCCCCCCcccccHHHHHHHH-HHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHH Q lcl|Aclame:pro 154 ----DPLPQRLVHHVRWMSINGYTGLSPVLLHANA-IGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRIT 228 (419) Q Consensus 154 ----~~~~~~~i~~~~~~~~~~~~G~s~~~~~~~~-i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (419) ..+..=.++++-....+...|.+|+..++.. +...+...++ ...+...+.|..+++--. ....+ T Consensus 231 ~~g~~~l~~IP~v~~~~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~-~~il~~~~~P~l~~~G~~--~~~~~-------- 299 (513) T protein:vir:97 231 DEWATGLNYVPLVTFYADRQGFMMGKPPLLDLAHLNVAHWQSASDQ-RHILTVSRFPILACSGAS--GEDSD-------- 299 (513) T ss_pred cCCCCcCCceeEEEEecCCCCCCCCccchHHHHHHHHHHHhhhhhH-HHHHHhcccceeeeecCC--cCCCC-------- Confidence 0000001122222222334577886644433 3333444443 444555677777775211 00000 Q ss_pred HHHHHHhccccccCcceecCC-C--ceeeecCcChhhHHHHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH-HHHHH Q lcl|Aclame:pro 229 DGWNAKFGGSGNAKKVALLQE-G--MKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIE-HQSLQ 304 (419) Q Consensus 229 ~~~~~~~~g~~n~g~~~vl~~-g--~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e-~~~~~ 304 (419) ...-|+ ..++.+++ | ..|.+.+.+..... .+..+...+++ ...|. .++... +++.+..+ ..... T Consensus 300 ----~i~iG~---~~~~~lpe~~~~~~yie~~g~~i~~~-~~~l~~le~qm-~~~Ga--~ll~~~-~~~~Ta~a~~~~~~ 367 (513) T protein:vir:97 300 ----PVVVGP---NKVLYNPDPAGRFYYVEHTGQAIAAG-RTDLKDLEEQM-AGYGA--EFLKRK-TGGQTATARALDSA 367 (513) T ss_pred ----ceEeec---cccccCCCCCCcceeeccCchhHHHH-HHHHHHHHHHH-HHHHH--HhhccC-CccccHHHHHHHHH Confidence 122344 23566664 4 45555554443332 23334444444 22332 223211 11211111 12222 Q ss_pred HHHHHhhHHHHHHHHHHHhhccC--hhhh---hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhC---C- Q lcl|Aclame:pro 305 FVIYTLLPWVKRHEQAKTRDLLL--PSER---KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLEN---M- 375 (419) Q Consensus 305 ~~~~~i~P~~~~i~~~l~~~ll~--~~~~---~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lG---l- 375 (419) =....|.-++..++++++..|-- ...+ ....+.++.+-....-.....+.+-+++..|.++....++.|- . T Consensus 368 ~~~S~L~~~a~~le~al~~~l~~~a~wlg~~~~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl 447 (513) T protein:vir:97 368 EATSDLSAMTGLFEDALAQALDITADWLRLGPNGGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVL 447 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCC Confidence 23334445666676666654321 1111 1223333333222222233445555677888888876665542 2 Q ss_pred CCC-C---------------Ccc--eeeecccccccccc-----ccccCCC-CCCccccccchhcc Q lcl|Aclame:pro 376 PPV-K---------------GGD--IYLSPMNMVDASKP-----QPIPMGK-TEPTKAALDEIGRI 417 (419) Q Consensus 376 ~p~-~---------------ggD--~~~~~~n~~~~~~~-----~~~~~~~-~~~~~~~~~e~~~~ 417 (419) +|. + +|+ --..+.+-.|.+.. ++...++ .+-+++..+.++.. T Consensus 448 ~~d~d~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (513) T protein:vir:97 448 PEDFDEDEDWEELMEEISEAMGRAGLDLDPAQKNPPEGGEGEGEGEGEGGEGGEGGEGGGNPGGES 513 (513) T ss_pred CccCCHHHHHHHHHHhhhhccCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC Confidence 111 0 000 00111221111110 0111111 11122223333333 No 243 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=26.46 E-value=1.9 Score=19.00 Aligned_cols=343 Identities=11% Similarity=0.024 Sum_probs=135.4 Q ss_pred CCccchhcccccc--ccccc--------chHHHHhhcCCCcccccccCHHHH-------hccHHHHHHHHHHHHhhccCC Q lcl|Aclame:pro 1 MFFSRQLLSNLGQ--TQPGS--------GGWVSALLGSARSEAGQVVTPASA-------LSLTVLQNCVTLLAESIAQLP 63 (419) Q Consensus 1 M~f~~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~i~~ia~~ia~~~ 63 (419) |.+.....+.... ..+.. ..-.+.+++. .+|-...++.... .....|..-.+.+. T Consensus 42 ~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ltP~-~~WFrl~~~d~~~~~~~~~~~~~~~v~~~L~~ve------- 113 (522) T protein:vir:94 42 FPKESDNSSTEYTTPWQAVGARCLNNLAAKLMLALFPQ-SPWMRLTVSEYEAKTLSQDSEAAARVDEGLAMVE------- 113 (522) T ss_pred cCCCCCcccccccccccccHHHHHHHHHHHHHhhcCCC-CcccccccchhhhhccCcccchhHHHHHHHHHHH------- Confidence 2222111111111 00100 0112233332 2221111111000 00111111111111 Q ss_pred eeEeeecCCcceeeccchHHHHhhccccccCCHHHHHHHHHHHHHHcCCeeEEEeecCCCceEEEEEecCceeEEEEccc Q lcl|Aclame:pro 64 VELYERSGDDRKPATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPD 143 (419) Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~lL~~~pn~~~s~~~f~~~~~~~~l~~G~~~~~i~~~~~G~~~~l~~~~~~~v~~~~~~~ 143 (419) ..+...| .+.|.+ .-+..+..+++.+|++.+++..+..|.+..+..++-..+-+..+.. T Consensus 114 ----------------~~~~~~~-~~snf~----~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~~pl~~y~v~~d~~ 172 (522) T protein:vir:94 114 ----------------RVLMAYM-ETNSFR----VPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRMYRLVSYVVQRDAF 172 (522) T ss_pred ----------------HHHHHHH-HhcCcH----HHHHHHHHHHHhhCcEeEeeeccCCCceeeEEEEEcceEEEeeCCC Confidence 1122233 244433 3455567788889999999877766655443333333344444433 Q ss_pred eeEEEEe----e--------------------------------------------cccc--------cccceEEEecCC Q lcl|Aclame:pro 144 LKPMYRV----A--------------------------------------------GADP--------LPQRLVHHVRWM 167 (419) Q Consensus 144 ~~~~~~~----~--------------------------------------------~~~~--------~~~~~i~~~~~~ 167 (419) +.+...+ . +... +..-..+..++. T Consensus 173 G~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~ 252 (522) T protein:vir:94 173 GNILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSYPLTACPYIPVRMV 252 (522) T ss_pred cCeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCCccccCCceeeeee Confidence 3211000 0 0000 011122333333 Q ss_pred CCCC-cccccHHHHHHHHHHHHHHHHHHHHHHHHccCCCceEEEeCCCCCchhhHHHHHHHHHHHHHHhccccccCccee Q lcl|Aclame:pro 168 SING-YTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDGWNAKFGGSGNAKKVAL 246 (419) Q Consensus 168 ~~~~-~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~n~g~~~v 246 (419) ..++ .||.||...++..+...+...+...........|..++.-.+.... .. + ..+.. | .++ T Consensus 253 ~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~~----~~---~-------~~~~~--g-~~v 315 (522) T protein:vir:94 253 RLDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVNPNGITQP----RR---L-------NKAAT--G-EFV 315 (522) T ss_pred ecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccccccc----hh---e-------eccCC--c-eee Confidence 3333 7999999999999999999999999999988888877654332211 11 1 11111 1 222 Q ss_pred cC--CCceeeecCcChhhHH-HHHHHHHHHHHHHHHhcCCHHHcccccCcccccHH-HHHHHHHHHHhhHHHHHHHHHHH Q lcl|Aclame:pro 247 LQ--EGMKFKPLSMTNVDAA-LIDALRLSALDIARIYKIPAHMVNELERATFSNIE-HQSLQFVIYTLLPWVKRHEQAKT 322 (419) Q Consensus 247 l~--~g~~~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvpp~~~g~~~~~~~sn~e-~~~~~~~~~~i~P~~~~i~~~l~ 322 (419) .. +++...++...+ +.+ ..+..+....+|-.+|-+.. +...+....+..| ..+..-....+.|.+.++.++|. T Consensus 316 ~g~~~~v~~~~~~~~~-~~~~~~~~i~~~~~rI~~af~~~~--~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~E~l 392 (522) T protein:vir:94 316 AGRVEDINFLQLTKGQ-DFTIAKSVADAIEQRLGWAFLLNS--AVQRNAERVTAEEIRYVAGELEATLGGVYSVQSQELQ 392 (522) T ss_pred cCCcccceeeeccccc-chhHHHHHHHHHHHHHHHHHhhhh--hccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHH Confidence 22 334555554333 333 35667788888999996652 2222222222222 34445566777888888877766 Q ss_pred hhccChhhh----hhhhhhhhhhhhhhccHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccccccc Q lcl|Aclame:pro 323 RDLLLPSER----KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMNMVDASKPQP 398 (419) Q Consensus 323 ~~ll~~~~~----~~~~~~fd~~~~~~~d~~~~~~~~~~~~~~g~~T~NE~R~~lGl~p~~ggD~~~~~~n~~~~~~~~~ 398 (419) .-|+..... .+.--.+.. .+...+...-...+.+... ..-+...+| .+....+ T Consensus 393 ~Pli~r~~~il~r~g~lP~~p~-~~v~v~~~s~La~~qr~~~-----~~~l~~~~~-----------------~ia~l~P 449 (522) T protein:vir:94 393 LPIVRVLMNQLQSAGMIPDLPK-EAVEPTVSTGLEALGRGQD-----LEKLTQAVN-----------------MMTGLQP 449 (522) T ss_pred HHHHHHHHHHHHhcCCCCCCCc-ccEEeeEecHHHHHHHHHH-----HHHHHHHHH-----------------HHHhccc Confidence 444321110 000000000 0000000000000000000 000011110 0000011 Q ss_pred ccCCCCCCccccccchhcccC Q lcl|Aclame:pro 399 IPMGKTEPTKAALDEIGRILS 419 (419) Q Consensus 399 ~~~~~~~~~~~~~~e~~~~~~ 419 (419) ... ...-+.++-=+.++ T Consensus 450 ~~~----~~~id~d~~~~~~a 466 (522) T protein:vir:94 450 LSQ----DPDINLPTLKLRLL 466 (522) T ss_pred hhh----hhcCCHHHHHHHHH Confidence 000 00111111112222 Done!