BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:106049|NCBI_annot:gp4|genbank:acc:YP_654 901;genbank:gi:109392357;genbank:GeneID:4157077 (583 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp... 1195 0.0 gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2... 781 0.0 gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp... 781 0.0 gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7... 645 0.0 gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7... 645 0.0 gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp... 375 e-106 gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: Te... 141 2e-35 gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: put... 120 4e-29 gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: Te... 99 1e-22 gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 ... 99 1e-22 gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp... 99 1e-22 gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp... 98 2e-22 gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: put... 80 6e-17 gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL ... 76 1e-15 gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: put... 75 2e-15 gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unkn... 67 7e-13 gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: pu... 60 1e-10 gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: pu... 47 6e-07 gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: pu... 45 2e-06 gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unk... 41 3e-05 gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: te... 31 0.048 gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hyp... 30 0.088 gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA... 27 0.91 gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA... 27 0.95 gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hyp... 27 0.95 gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA... 26 1.3 gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: lar... 26 1.4 gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18... 25 2.2 gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DN... 25 2.3 gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DN... 25 2.5 gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA... 25 2.5 gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: ... 25 2.6 gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: put... 25 2.6 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 25 2.7 gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DN... 25 2.9 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 24 4.1 gi|9605|lcl|protein:vir:97240 Length: 510 # NCBI annotation: hyp... 24 5.2 gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: mat... 23 7.7 gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA... 23 7.9 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 23 9.5 >gi|3011|lcl|protein:vir:106049 Length: 583 # NCBI annotation: gp4 # Family: family:all:144 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654901;genbank:gi:109392357;genbank:GeneI D:4157077 Length = 583 Score = 1195 bits (3091), Expect = 0.0, Method: Compositional matrix adjust. Identities = 583/583 (100%), Positives = 583/583 (100%) Query: 1 MAKQPELEFPENGSGDPTVDVWTGDGTFDSAKAETIFEETKNWPPEQRAAMLRSLRAAET 60 MAKQPELEFPENGSGDPTVDVWTGDGTFDSAKAETIFEETKNWPPEQRAAMLRSLRAAET Sbjct: 1 MAKQPELEFPENGSGDPTVDVWTGDGTFDSAKAETIFEETKNWPPEQRAAMLRSLRAAET 60 Query: 61 RATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSSL 120 RATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSSL Sbjct: 61 RATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSSL 120 Query: 121 CSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKIG 180 CSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKIG Sbjct: 121 CSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKIG 180 Query: 181 LRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRANV 240 LRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRANV Sbjct: 181 LRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRANV 240 Query: 241 ELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEG 300 ELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEG Sbjct: 241 ELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEG 300 Query: 301 IPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFD 360 IPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFD Sbjct: 301 IPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFD 360 Query: 361 PRLPQPPTYPAASVVGIDPADSGEGDETGIVCGALYHDGMAKVALTHDRSGMFTSDQWAR 420 PRLPQPPTYPAASVVGIDPADSGEGDETGIVCGALYHDGMAKVALTHDRSGMFTSDQWAR Sbjct: 361 PRLPQPPTYPAASVVGIDPADSGEGDETGIVCGALYHDGMAKVALTHDRSGMFTSDQWAR 420 Query: 421 EGVLLALEQGARVIAVEGYTAAKTYVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTD 480 EGVLLALEQGARVIAVEGYTAAKTYVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTD Sbjct: 421 EGVLLALEQGARVIAVEGYTAAKTYVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTD 480 Query: 481 IPPFQIKPWRGANKADAVARAGGLSQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRV 540 IPPFQIKPWRGANKADAVARAGGLSQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRV Sbjct: 481 IPPFQIKPWRGANKADAVARAGGLSQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRV 540 Query: 541 AAAIIVHDILMEMAGAQMQVAAPVNRTPTAPPAWMRRHIGKQF 583 AAAIIVHDILMEMAGAQMQVAAPVNRTPTAPPAWMRRHIGKQF Sbjct: 541 AAAIIVHDILMEMAGAQMQVAAPVNRTPTAPPAWMRRHIGKQF 583 >gi|2061|lcl|protein:vir:97894 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655098;genbank:gi:109391848;genbank:GeneI D:4157257 Length = 595 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/588 (66%), Positives = 459/588 (78%), Gaps = 13/588 (2%) Query: 5 PELEFPENGSGDPTVDVWTGDGTFDSAKAETIFEETKNWPPEQRAAMLRSLRAAETRATV 64 P +E P + DP DVW DG +D KA I E+ ++W EQ+ AML SLRAA+ RA++ Sbjct: 10 PIIEIPSPDAPDP--DVWGEDGAYDERKAAVILEQARSWSTEQKHAMLASLRAAKARASM 67 Query: 65 RTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSSLCSVW 124 + KY HPAE+AAA+ P Y +TPA+ +ISTSIERVL S ++INL +SMPPQEGKS+L +V Sbjct: 68 KVKYAHPAELAAALDPNYVVTPAIELISTSIERVLTSPKQINLEISMPPQEGKSTLAAVA 127 Query: 125 APLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKIGLRLA 184 PLRALQ NP+R+IILATYA LA+ HSRT RE I T+G + DPLTGL VEDKIGL+LA Sbjct: 128 TPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDVVDPLTGLPVEDKIGLKLA 187 Query: 185 QGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWF 244 +GANK++ WSV GG GGL+AAGIG+ +TGMPADL+IIDDPFKNMMEADSA +R V+ WF Sbjct: 188 RGANKVTAWSVAGGRGGLVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWF 247 Query: 245 SSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDA 304 SSVA TRLAPDASII+IQTRWHPEDLAGKV+A E+ L +ERTWR +NIPAIAE+GIPDA Sbjct: 248 SSVARTRLAPDASIIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDA 307 Query: 305 LKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFD-PRL 363 LKR GTPMVSARDT EAKRNF + R++VGERTWYALYQGSPRNP GGIFQ+ WFD RL Sbjct: 308 LKREPGTPMVSARDTPEAKRNFPKIRREVGERTWYALYQGSPRNPEGGIFQQKWFDATRL 367 Query: 364 PQPPTYPAASVVGIDPADSGEGDETGIVCG-ALYHDGMAKVALTHDRSGMFTSDQWAREG 422 P+ P P +VVGIDPADSGEGDE GI+ G A D LTHDRSG +TSDQWA+ G Sbjct: 368 PEAPLNPYTAVVGIDPADSGEGDEAGIIGGMAATIDKRLTAVLTHDRSGQYTSDQWAKVG 427 Query: 423 VLLALEQGARVIAVEGYTAAKTYVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTDIP 482 V LALE GARV+AVEGYT AKTY RVVR+AY AIH EA K+ +G LTPVE RAL D+P Sbjct: 428 VTLALEIGARVLAVEGYTTAKTYTRVVREAYNAIHREARKKQLAGVPLTPVEHRALPDLP 487 Query: 483 PFQIKPWRGANKADAVARAGGLSQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRVAA 542 PF IKPWRGANKADAVARAGG+SQS ETGR RT++ +LA FE+QA DWQ GQHQPDRVAA Sbjct: 488 PFTIKPWRGANKADAVARAGGMSQSFETGRARTIDYALATFEQQAVDWQAGQHQPDRVAA 547 Query: 543 AIIVHDILMEMAGAQMQVAA-PVNRTPTA--------PPAWMRRHIGK 581 IIVHD + ++ G M +AA P P+ PPAWMRR IGK Sbjct: 548 GIIVHDTIFDLMGGTMSIAAPPTGSNPSGGQGREIPPPPAWMRRSIGK 595 >gi|1961|lcl|protein:vir:107494 Length: 595 # NCBI annotation: gp2 # Family: family:all:144 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943780;genbank:gi:38638405;genbank:GeneID :2657174 Length = 595 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/588 (66%), Positives = 459/588 (78%), Gaps = 13/588 (2%) Query: 5 PELEFPENGSGDPTVDVWTGDGTFDSAKAETIFEETKNWPPEQRAAMLRSLRAAETRATV 64 P +E P + DP DVW DG +D KA I E+ ++W EQ+ AML SLRAA+ RA++ Sbjct: 10 PIIEIPSPDAPDP--DVWGEDGAYDERKAAVILEQARSWSTEQKHAMLASLRAAKARASM 67 Query: 65 RTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSSLCSVW 124 + KY HPAE+AAA+ P Y +TPA+ +ISTSIERVL S ++INL +SMPPQEGKS+L +V Sbjct: 68 KVKYAHPAELAAALDPNYVVTPAIELISTSIERVLTSPKQINLEISMPPQEGKSTLAAVA 127 Query: 125 APLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKIGLRLA 184 PLRALQ NP+R+IILATYA LA+ HSRT RE I T+G + DPLTGL VEDKIGL+LA Sbjct: 128 TPLRALQHNPHRKIILATYALDLAETHSRTMREWIETYGTDVVDPLTGLPVEDKIGLKLA 187 Query: 185 QGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWF 244 +GANK++ WSV GG GGL+AAGIG+ +TGMPADL+IIDDPFKNMMEADSA +R V+ WF Sbjct: 188 RGANKVTAWSVAGGRGGLVAAGIGSRLTGMPADLMIIDDPFKNMMEADSALYRKRVDEWF 247 Query: 245 SSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDA 304 SSVA TRLAPDASII+IQTRWHPEDLAGKV+A E+ L +ERTWR +NIPAIAE+GIPDA Sbjct: 248 SSVARTRLAPDASIIMIQTRWHPEDLAGKVIAAERSLPRNERTWRVINIPAIAEKGIPDA 307 Query: 305 LKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFD-PRL 363 LKR GTPMVSARDT EAKRNF + R++VGERTWYALYQGSPRNP GGIFQ+ WFD RL Sbjct: 308 LKREPGTPMVSARDTPEAKRNFPKIRREVGERTWYALYQGSPRNPEGGIFQQKWFDATRL 367 Query: 364 PQPPTYPAASVVGIDPADSGEGDETGIVCG-ALYHDGMAKVALTHDRSGMFTSDQWAREG 422 P+ P P +VVGIDPADSGEGDE GI+ G A D LTHDRSG +TSDQWA+ G Sbjct: 368 PEAPLNPYTAVVGIDPADSGEGDEAGIIGGMAATIDKRLTAVLTHDRSGQYTSDQWAKVG 427 Query: 423 VLLALEQGARVIAVEGYTAAKTYVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTDIP 482 V LALE GARV+AVEGYT AKTY RVVR+AY AIH EA K+ +G LTPVE RAL D+P Sbjct: 428 VTLALEIGARVLAVEGYTTAKTYTRVVREAYNAIHREARKKQLAGVPLTPVEHRALPDLP 487 Query: 483 PFQIKPWRGANKADAVARAGGLSQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRVAA 542 PF IKPWRGANKADAVARAGG+SQS ETGR RT++ +LA FE+QA DWQ GQHQPDRVAA Sbjct: 488 PFTIKPWRGANKADAVARAGGMSQSFETGRARTIDYALATFEQQAVDWQAGQHQPDRVAA 547 Query: 543 AIIVHDILMEMAGAQMQVAA-PVNRTPTA--------PPAWMRRHIGK 581 IIVHD + ++ G M +AA P P+ PPAWMRR IGK Sbjct: 548 GIIVHDTIFDLMGGTMSIAAPPTGSNPSGGQGREIPPPPAWMRRSIGK 595 >gi|18586|lcl|protein:vir:8649 Length: 564 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817768;genbank:gi:29566200;genbank:GeneID :1259404 Length = 564 Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/557 (58%), Positives = 403/557 (72%), Gaps = 9/557 (1%) Query: 28 FDSAKAETIFEETKNWPPEQRAAMLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPA 87 F + +AE ++ +K+WPPEQRA +L L AA R V +YR+PAE+AA V PG+ ITPA Sbjct: 11 FSTPEAELVYRASKSWPPEQRAGLLAQLEAARAREAVVGRYRNPAELAATVDPGFNITPA 70 Query: 88 LAMISTSIERVLNSHRKI--NLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQ 145 L +I+ +IE +L+S + NL ++ PPQEGKS++ SV+ LRALQLNPN RIILA Y Q Sbjct: 71 LWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYGQ 130 Query: 146 PLADMHSRTAREVISTHGAGITDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAA 205 LA HSR R++I HG+G+ D +TG +EDK+GL+L +GANK+S WS+EGG+GGL+A Sbjct: 131 DLAHGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEGGSGGLVAT 190 Query: 206 GIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRW 265 G+G TITG PADL IIDDP+K+M EADSAT+RA V+LW ++VA TRLAP A ILIQTRW Sbjct: 191 GLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGAPTILIQTRW 250 Query: 266 HPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRN 325 HPEDLAGKVL E L +RTWRH+NIPAIAEEGI DAL R G MVSAR K Sbjct: 251 HPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAPGEAMVSAR--GRTKEQ 308 Query: 326 FAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWF-DPRLPQPPTYPAASVVGIDPADSGE 384 F T+++VG+R WYA+YQGSP NPAGG+FQR+WF D RL P P AS+VGIDPADSGE Sbjct: 309 FEATKRKVGDRVWYAMYQGSPTNPAGGLFQRSWFEDRRLTGTPILPVASIVGIDPADSGE 368 Query: 385 GDETGIVCGALYHDGMAKVALTHDRSGMFTSDQWAREGVLLALEQGARVIAVEGYTAAKT 444 GDETGI+ G L DG +AL D SG TSD+W+R+ V LAL GAR IA+E + A T Sbjct: 369 GDETGIIAGTLTGDGT--IALVEDWSGQMTSDEWSRQAVTLALTVGAREIAMEAFATATT 426 Query: 445 YVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTDIPPFQIKPWRGANKADAVARAGGL 504 YV+V+++A+ IH AV K +G +LTPVEQRAL PF I W K DAV R+ L Sbjct: 427 YVKVIKRAWEQIHEAAVEKHNAGGILTPVEQRALAPQMPFAIHKWTA--KGDAVGRSALL 484 Query: 505 SQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRVAAAIIVHDILMEMAGAQMQVAAPV 564 Q+ E G CRTVE LAVFE+QACDWQ GQHQPDRVAAA+I HD L +A + +AAPV Sbjct: 485 RQACEVGTCRTVEYKLAVFEDQACDWQAGQHQPDRVAAALIAHDRLAALATGRSNLAAPV 544 Query: 565 NRTPTAPPAWMRRHIGK 581 + P+ PAW+RR IG+ Sbjct: 545 SDRPSEVPAWLRRTIGR 561 >gi|7375|lcl|protein:vir:99083 Length: 566 # NCBI annotation: gp7 # Family: family:all:144 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655687;genbank:gi:109521765;genbank:GeneI D:4157805 Length = 566 Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/557 (58%), Positives = 402/557 (72%), Gaps = 9/557 (1%) Query: 28 FDSAKAETIFEETKNWPPEQRAAMLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPA 87 F + +AE ++ +K+WPPEQRA +L L AA R V +YR+PAE+AA V PG+ ITPA Sbjct: 13 FSTPEAELVYRASKSWPPEQRAGLLAQLEAARAREAVVGRYRNPAELAATVDPGFNITPA 72 Query: 88 LAMISTSIERVLNSHRKI--NLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQ 145 L +I+ +IE +L+S + NL ++ PPQEGKS++ SV+ LRALQLNPN RIILA Y Q Sbjct: 73 LWLIAEAIEALLHSPPGVTRNLLITCPPQEGKSTMASVYTVLRALQLNPNARIILACYGQ 132 Query: 146 PLADMHSRTAREVISTHGAGITDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAA 205 LA HSR R++I HG+G+ D +TG +EDK+GL+L +GANK+S WS+EGG GGL+A Sbjct: 133 DLAHGHSRKCRDLIKRHGSGVRDAMTGAQIEDKLGLKLERGANKVSEWSIEGGTGGLVAT 192 Query: 206 GIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRW 265 G+G TITG PADL IIDDP+K+M EADSAT+RA V+LW ++VA TRLAP A ILIQTRW Sbjct: 193 GLGGTITGKPADLFIIDDPYKHMSEADSATYRAKVDLWMATVATTRLAPGAPTILIQTRW 252 Query: 266 HPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRN 325 HPEDLAGKVL E L +RTWRH+NIPAIAEEGI DAL R G MVSAR K Sbjct: 253 HPEDLAGKVLTAELELPKAQRTWRHINIPAIAEEGIKDALDRAPGEAMVSAR--GRTKEQ 310 Query: 326 FAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWF-DPRLPQPPTYPAASVVGIDPADSGE 384 F T+++VG+R WYA+YQGSP NPAGG+FQR+WF D RL P P AS+VGIDPADSGE Sbjct: 311 FEATKRKVGDRVWYAMYQGSPTNPAGGLFQRSWFEDRRLTGTPILPVASIVGIDPADSGE 370 Query: 385 GDETGIVCGALYHDGMAKVALTHDRSGMFTSDQWAREGVLLALEQGARVIAVEGYTAAKT 444 GDETGI+ G L DG +AL D SG TSD+W+R+ V LAL GAR IA+E + A T Sbjct: 371 GDETGIIAGTLTGDGT--IALVEDWSGQMTSDEWSRQAVTLALTVGAREIAMEAFATATT 428 Query: 445 YVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTDIPPFQIKPWRGANKADAVARAGGL 504 YV+V+++A+ IH AV K +G +LTPVEQRAL PF I W K DAV R+ L Sbjct: 429 YVKVIKRAWEQIHEAAVEKHNAGGILTPVEQRALAPQMPFAIHKWTA--KGDAVGRSALL 486 Query: 505 SQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRVAAAIIVHDILMEMAGAQMQVAAPV 564 Q+ E G CRTVE LAVFE+QACDWQ GQHQPDRVAAA+I HD L +A + +AAPV Sbjct: 487 RQACEVGTCRTVEYKLAVFEDQACDWQAGQHQPDRVAAALIAHDRLAALATGRSNLAAPV 546 Query: 565 NRTPTAPPAWMRRHIGK 581 + P+ PAW+RR IG+ Sbjct: 547 SDRPSEVPAWLRRTIGR 563 >gi|7834|lcl|protein:vir:102402 Length: 807 # NCBI annotation: gp6 # Family: family:all:144 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655283;genbank:gi:109521846;genbank:GeneI D:4157717 Length = 807 Score = 375 bits (962), Expect = e-106, Method: Compositional matrix adjust. Identities = 190/322 (59%), Positives = 227/322 (70%), Gaps = 7/322 (2%) Query: 262 QTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDALKRPY-GTPMVSARDTD 320 TRWHPEDL+G ++AGEKLL+ ++RTWRH+N+PA++EEGIPDAL RP G PM+SAR Sbjct: 489 NTRWHPEDLSGTIIAGEKLLDAEDRTWRHINVPAVSEEGIPDALGRPEPGIPMISARG-- 546 Query: 321 EAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLPQPPTYPAASVVGIDPA 380 R F QTRK VGER WYALYQGSPRNPAGG+F RAWF+P + P P A++V IDPA Sbjct: 547 RTLREFNQTRKSVGERVWYALYQGSPRNPAGGLFMRAWFEPMAERSPERPLATIVAIDPA 606 Query: 381 DSGEGDETGIVCGALYHDGMAKVALTHDRSGMFTSDQWAREGVLLALEQGARVIAVEGYT 440 DSGEGDETGI+ G L DG + LT D S TSD+W R+ VLLAL+ GAR IA+E Y Sbjct: 607 DSGEGDETGIIGGMLDRDGT--IVLTDDWSDQMTSDKWGRQAVLLALKLGAREIALEAYA 664 Query: 441 AAKTYVRVVRQAYTAIHNEAVAKRKSGALLTPVEQRALTDIPPFQIKPWRGANKADAVAR 500 +A TY VV+ A+ A+H EAV K SGA L+PVEQRAL PF I WRG K D V R Sbjct: 665 SATTYANVVKNAWKALHREAVEKHNSGAALSPVEQRALATNMPFVIHQWRG--KGDDVGR 722 Query: 501 AGGLSQSLETGRCRTVEGSLAVFEEQACDWQMGQHQPDRVAAAIIVHDILMEMAGAQMQV 560 + L Q ET +C VEG + F +QACDWQ GQHQPDRVAAA+I HD L ++ G MQ+ Sbjct: 723 SALLRQQCETRKCLVVEGRMQTFVDQACDWQAGQHQPDRVAAAVIAHDRLHQLGGGMMQL 782 Query: 561 AAPVNRTPTAPPAWMRRHIGKQ 582 A R P PPAWM+R I K+ Sbjct: 783 PAGPTRKPPPPPAWMKRSIKKK 804 Score = 284 bits (727), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 138/236 (58%), Positives = 179/236 (75%), Gaps = 1/236 (0%) Query: 28 FDSAKAETIFEETKNWPPEQRAAMLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPA 87 F SAKA I+E ++WP +Q+AA +R + AA+ RA +R +Y + AE+A AV P + ITPA Sbjct: 2 FSSAKAARIYEAARSWPADQKAAAIRYIEAAKNRAQIRKRYANAAELATAVDPEFVITPA 61 Query: 88 LAMISTSIERVLNSHRKINLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQPL 147 L +IS +IE VL + + NL V+MPPQEGKS++C+VW P+RALQLNPNRRIILATY L Sbjct: 62 LRIISDAIEDVLR-YPRCNLLVTMPPQEGKSTMCAVWTPIRALQLNPNRRIILATYGDSL 120 Query: 148 ADMHSRTAREVISTHGAGITDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGI 207 AD HS TAR++I +G G+TD LTGLAVEDK+GL++ K+S W ++G GG++AAG+ Sbjct: 121 ADQHSTTARDLIMRYGTGVTDALTGLAVEDKLGLKINPKQAKVSSWRIDGAIGGMVAAGL 180 Query: 208 GATITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDASIILIQT 263 G+ ITG ADL IIDDPFKNM+EADS HR V WF+SVA TRL+P+AS+ILIQ Sbjct: 181 GSAITGKSADLFIIDDPFKNMIEADSTRHREKVNEWFASVASTRLSPEASMILIQC 236 >gi|12543|lcl|protein:vir:80106 Length: 486 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468706;genbank:gi:157325286;genbank:Ge neID:5601797 Length = 486 Score = 141 bits (356), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/283 (31%), Positives = 133/283 (46%), Gaps = 23/283 (8%) Query: 82 YRITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILA 141 Y++ +I ++ +++ +K + MPP+ KS + P L NP +R+I Sbjct: 40 YQLFEHTELICEKLQHIIDGEQKYYI-FEMPPRHSKSMTITETFPSYFLMKNPKKRVITT 98 Query: 142 TYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGG 201 +Y+ LA R R+ I G + D + + + ++ WS++ GG Sbjct: 99 SYSDALAKQFGRKNRDKIKMAGDQLFD------------IHINPANSGVTDWSIDQYGGG 146 Query: 202 LLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDASIILI 261 + + + TG ADLLIIDDP KN EA+S T R + + S TRL S+I+I Sbjct: 147 MYSTSMLGGATGRGADLLIIDDPIKNREEAESKTIRDKIYQEWESTFFTRLHKGHSVIVI 206 Query: 262 QTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDE 321 TRWH +DL G++L L W + +PAIAEE D L R G + +E Sbjct: 207 MTRWHEDDLIGRLLKANTL------PWERIRLPAIAEEN--DLLGREIGQALCPELGYNE 258 Query: 322 AKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLP 364 T+K VG RTW +LYQ PR G IF+ W +P Sbjct: 259 EWAEI--TKKTVGSRTWASLYQQRPRPAEGAIFKEKWLRYYVP 299 >gi|17058|lcl|protein:vir:5248 Length: 487 # NCBI annotation: putative terminase large subunit TerL # Family: family:all:144 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852753;genbank:gi:31544028;interpro:IPR00 4921;interpro:IPR006517;uniprot:Q7Y5U7;genbank:GeneID:27 53564 Length = 487 Score = 120 bits (301), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 134/268 (50%), Gaps = 11/268 (4%) Query: 107 LSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGI 166 L + PP+ GKS L S P NP +II +Y+ LA + + +I Sbjct: 66 LMIYAPPRSGKSELFSRRFPAWVFGQNPELQIIACSYSADLASRMNLDVQRIIDDPIYHS 125 Query: 167 TDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFK 226 P T L +++ I + + + G G +AG+G ITGM AD+ IIDDP K Sbjct: 126 IFPNTALNIKN-IATISGKPLRNSEIFEIVGHLGAYRSAGVGGGITGMGADIAIIDDPVK 184 Query: 227 NMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDER 286 + EA+S T R ++ W+++ TRL+P + ++L TRWH +DLAG+++ K E Sbjct: 185 DAKEANSQTVRDSIWDWYTTTLYTRLSPKSGVLLGMTRWHEDDLAGRLI---KEAENGGD 241 Query: 287 TWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSP 346 WR + PAIAEE D R G P+ R D + N + R+ VG + W ALYQ P Sbjct: 242 QWRIVKFPAIAEE---DEEFRKEGEPLHPER-FDLERLN--KIRQAVGSQAWNALYQQRP 295 Query: 347 RNPAGGIFQRAWFDPRLPQPPTYPAASV 374 N GGI + +WF R PP ++ Sbjct: 296 SNKGGGIIKGSWFG-RYKVPPIIKVKAI 322 >gi|11323|lcl|protein:vir:78588 Length: 507 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294855;genbank:gi:149882918;genbank:Ge neID:5291059 Length = 507 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 138/310 (44%), Gaps = 30/310 (9%) Query: 51 MLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVS 110 + R+ AA R +YRH A A A I I+ +L R + L ++ Sbjct: 37 LARTNFAAFVSLVHRPRYRHSAFSARVC----------AEIDKFIDDLLEGKRPV-LMLT 85 Query: 111 MPPQEGKSSLCS-VWAPL---RALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGI 166 PPQ GKSSL S AP R L P RI ATYA PLA ++ A+ ++ Sbjct: 86 APPQHGKSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNATDAKSIMKEPVYRA 145 Query: 167 TDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFK 226 P L IG + G + + + V G G G+G +TG D+ IIDD K Sbjct: 146 VFPHVSL-----IGFK--GGKDTSNEFDVPAG-GEFRGVGVGGPLTGFSIDVGIIDDATK 197 Query: 227 NMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDER 286 N EA SA + +E W+ SV LTRL + +ILI T W DL +V + +E + Sbjct: 198 NAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV---RRKME-GQP 253 Query: 287 TWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSP 346 + L+ PA+ + PD + P+ + + + R+ + E W A+YQ P Sbjct: 254 NFTLLSFPALND---PDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVP 310 Query: 347 RNPAGGIFQR 356 + G IF R Sbjct: 311 LSEFGAIFPR 320 >gi|692|lcl|protein:vir:3649 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705644;genbank:gi:23752329;genbank:GeneID :955741 Length = 507 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 138/310 (44%), Gaps = 30/310 (9%) Query: 51 MLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVS 110 + R+ AA R +Y+H A A A I I+ +L+ R + L ++ Sbjct: 37 LARTNFAAFVSLVHRPRYKHSAFSARVC----------AEIDKFIDDLLDGKRPV-LMLT 85 Query: 111 MPPQEGKSSLCS-VWAPL---RALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGI 166 PPQ GKSSL S AP R L P RI ATYA PLA +S A+ ++ Sbjct: 86 APPQHGKSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNSTDAKSIMKEPVYRA 145 Query: 167 TDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFK 226 P L IG + + + F EGG G+G +TG D+ IIDD K Sbjct: 146 VFPHVSL-----IGFKGNKDTSN-EFDVPEGGE--FRGVGVGGPLTGFSIDVGIIDDATK 197 Query: 227 NMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDER 286 N EA SA + +E W+ SV LTRL + +ILI T W DL +V + +E + Sbjct: 198 NAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV---RRKME-GQP 253 Query: 287 TWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSP 346 + L+ PA+ + PD + P+ + + + R+ + E W A+YQ P Sbjct: 254 NFTLLSFPALND---PDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVP 310 Query: 347 RNPAGGIFQR 356 + G IF R Sbjct: 311 LSEFGAIFSR 320 >gi|6927|lcl|protein:vir:106715 Length: 507 # NCBI annotation: gp19 # Family: family:all:144 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944327;genbank:gi:38638626;genbank:GeneID :2657344 Length = 507 Score = 99.0 bits (245), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 138/310 (44%), Gaps = 30/310 (9%) Query: 51 MLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVS 110 + R+ AA R +YRH A A A I I+ +L R + L ++ Sbjct: 37 LARTNFAAFVSLVHRPRYRHSAFSARVC----------AEIDKFIDDLLEGKRPV-LMLT 85 Query: 111 MPPQEGKSSLCS-VWAPL---RALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGI 166 PPQ GKSSL S AP R L P RI ATYA PLA ++ A+ ++ Sbjct: 86 APPQHGKSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNATDAKSIMKEPVYRA 145 Query: 167 TDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFK 226 P L IG + G + + + V G G G+G +TG D+ IIDD K Sbjct: 146 VFPHVSL-----IGFK--GGKDTSNEFDVPAG-GEFRGVGVGGPLTGFSIDVGIIDDATK 197 Query: 227 NMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDER 286 N EA SA + +E W+ SV LTRL + +ILI T W DL +V + +E + Sbjct: 198 NAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV---RRKME-GQP 253 Query: 287 TWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSP 346 + L+ PA+ + PD + P+ + + + R+ + E W A+YQ P Sbjct: 254 NFTLLSFPALND---PDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVP 310 Query: 347 RNPAGGIFQR 356 + G IF R Sbjct: 311 LSEFGAIFPR 320 >gi|1758|lcl|protein:vir:101556 Length: 507 # NCBI annotation: gp18 # Family: family:all:144 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958123;genbank:gi:41057669;genbank:GeneID :2716813 Length = 507 Score = 98.2 bits (243), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/310 (30%), Positives = 138/310 (44%), Gaps = 30/310 (9%) Query: 51 MLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVS 110 + R+ AA R +Y+H A A A I I+ +L+ R + L ++ Sbjct: 37 LARTNFAAFVSLVHRPRYKHSAFSARVC----------AEIDKFIDDLLDGKRPV-LMLT 85 Query: 111 MPPQEGKSSLCS-VWAPL---RALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGI 166 PPQ GKSSL S AP R L P RI ATYA PLA +S A+ ++ Sbjct: 86 APPQHGKSSLISRCLAPYLYGRLTGLLPAVRIANATYALPLARRNSTDAKSIMKEPVYRA 145 Query: 167 TDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFK 226 P L IG + + + F EGG G+G +TG D+ IIDD K Sbjct: 146 VFPHVSL-----IGFKGNKDTSN-EFDVPEGGE--FRGVGVGGPLTGFSIDVGIIDDATK 197 Query: 227 NMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDER 286 N EA SA + +E W+ SV LTRL + +ILI T W DL +V + +E + Sbjct: 198 NAEEALSAVVQDGLENWYDSVLLTRLQQLSGVILIGTPWSANDLLARV---RRKME-GQP 253 Query: 287 TWRHLNIPAIAEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSP 346 + L+ PA+ + PD + P+ + + + R+ + E W A+YQ P Sbjct: 254 NFTLLSFPALND---PDQIGYNPDLPLGALVPHLHSADKLREMRRNISEFWWSAMYQQVP 310 Query: 347 RNPAGGIFQR 356 + G IF R Sbjct: 311 LSEFGAIFPR 320 >gi|13633|lcl|protein:vir:3963 Length: 462 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663671;genbank:gi:21716108;genbank:GeneID :951204 Length = 462 Score = 80.1 bits (196), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 140/349 (40%), Gaps = 37/349 (10%) Query: 62 ATVRTKYRHPAEMAAAVTPGY--RITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSS 119 A + R + + P + R L + + LN L +++PP+ GKS Sbjct: 8 AKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDDEHDVLVLNLPPRHGKSL 67 Query: 120 LCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKI 179 + L + ++I+ +Y + L+ + S+ R I + A + + D Sbjct: 68 TLGKFVEW-VLGNDHTKKIMTGSYNEILSTVFSKNVRNTIQQNKADV----DKIVYSDIF 122 Query: 180 GLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRAN 239 ++ G + WS+ G LA T TG AD++IIDD KN EA++AT Sbjct: 123 DSKIKDGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEK 182 Query: 240 VELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEE 299 WF + L+RL II+ TRWH EDLAG+ L + L + +H+N A E+ Sbjct: 183 HWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRAL---RELPKNGYRVKHINFKAFNEQ 239 Query: 300 GIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWF 359 M+ D ++ + K +G A YQ P + G ++ Sbjct: 240 ----------TNEMLC--DDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLY----- 282 Query: 360 DPRLPQPPTYPAASVVG-----IDPADSGEGDETGIVCGALYHDGMAKV 403 + TY A S D AD+G+ IV G DG A V Sbjct: 283 ----SEFQTYNARSEYKKIWNYCDTADTGKDYLCSIVWGET-SDGFADV 326 >gi|291|lcl|protein:vir:3608 Length: 462 # NCBI annotation: TerL # Family: family:all:144 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112694;genbank:gi:13786562;genbank:GeneID :921033 Length = 462 Score = 76.3 bits (186), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 10/240 (4%) Query: 62 ATVRTKYRHPAEMAAAVTPGY--RITPALAMISTSIERVLNSHRKINLSVSMPPQEGKSS 119 A + R + + P + R L + + LN + L +++PP+ GKS Sbjct: 8 AKIELSKRFFFDYCNLIMPSFYKRDRAYLVTMCEEFQSFLNDNEHDVLVLNLPPRHGKSL 67 Query: 120 LCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKI 179 + L + ++I+ +Y + L+ + S+ R + A + D Sbjct: 68 TLGKFVEW-VLGNDHTKKIMTGSYNETLSTVFSKNVRNTLQEEKA----DENKIVYSDIF 122 Query: 180 GLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRAN 239 + G + WS+ G LA T TG AD++IIDD KN EA++AT Sbjct: 123 DAAIKYGDAAKNLWSLSDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEK 182 Query: 240 VELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEE 299 WF + L+RL II+ TRWH EDLAG+ L + L + +H+N A E+ Sbjct: 183 HWDWFVNTMLSRLESGGKIIINMTRWHSEDLAGRAL---RELPKNGYRVKHINFKAFNEQ 239 >gi|2538|lcl|protein:vir:94056 Length: 483 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453630;genbank:gi:84662666;genbank:GeneID :5142566 Length = 483 Score = 75.1 bits (183), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 86/348 (24%), Positives = 152/348 (43%), Gaps = 40/348 (11%) Query: 53 RSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIERVLNSHRKINLSVSMP 112 R+ AA AT R ++ H ++ + +V + +E ++ R I L ++ P Sbjct: 14 RTNYAAFVSATHRPRFIH-SDFSYSVCKA---------VDDFVEDLIAGRRPI-LDLTAP 62 Query: 113 PQEGKSSLCSVWAPLRAL-QLNP---NRRIILATYAQPLADMHSRTAREVISTHGAGITD 168 PQ GKSSL S P + +L P + R+ L++YA P A + R AR ++ + Sbjct: 63 PQFGKSSLISRCLPGYVIGRLGPVLGHCRVALSSYALPRAKANLRDARSIM-------CE 115 Query: 169 PLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIIDDPFKNM 228 P+ L G N ++ + G + A G+G ++TG D+ + DD + Sbjct: 116 PIYREIFPHASMLTFKGGRNTYDYF--DHPYGFIKAQGVGGSLTGFSIDVGLNDDLTADA 173 Query: 229 MEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTW 288 +A S T + + W+++V TRL + I + T W D+ ++ K + + + Sbjct: 174 QDALSQTVQDGHQDWYATVFTTRLQQRSGQINMGTPWSANDIMARI----KKVHEGKPNY 229 Query: 289 RHLNIPAI---AEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGS 345 R L+ PA+ E G L+ P + ++ + + + E W A+YQ + Sbjct: 230 RRLSYPALNYPGEIGYDPDLREGALVPEL------HSEEKLREIKASMSEAWWAAMYQQA 283 Query: 346 PRNPAGGIFQRAWFD-PRLPQPPTYPAASVVGIDPADSGEGDETGIVC 392 P + G IF + R + PT A ++ +D S +G ET C Sbjct: 284 PMSEMGAIFGKGGVRYYRQGELPTAFAQVIMTVDA--SFKGKETSDFC 329 >gi|15492|lcl|protein:vir:732 Length: 402 # NCBI annotation: unknown # Family: family:all:144 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108709;genbank:gi:13487831;genbank:GeneID :920905 Length = 402 Score = 66.6 bits (161), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 111/273 (40%), Gaps = 34/273 (12%) Query: 136 RRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAVEDKIGLRLAQGANKISFWSV 195 ++I+ +Y + L+ + S+ R + A + D + G + WS+ Sbjct: 23 KKIMTGSYNETLSTVFSKNVRNTLQEEKA----DENKIVYSDIFDAAIKYGDAAKNLWSL 78 Query: 196 EGGAGGLLAAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPD 255 G LA T TG AD++IIDD KN EA++AT WF + L+RL Sbjct: 79 SDGYNNYLATSPTGTATGFGADIIIIDDVIKNAEEANNATVLEKHWDWFVNTMLSRLESG 138 Query: 256 ASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEGIPDALKRPYGTPMVS 315 II+ TRWH EDLAG+ L + L + +H+N A E+ M+ Sbjct: 139 GKIIINMTRWHSEDLAGRAL---RELPKNGYRVKHINFKAFNEQ----------TNEMLC 185 Query: 316 ARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLPQPPTYPAASVV 375 D ++ + K +G A YQ P + G ++ + TY A S Sbjct: 186 --DDVLTLEDYKRKVKTMGADIASANYQQEPIDVKGRLY---------SEFQTYNARSEY 234 Query: 376 G-----IDPADSGEGDETGIVCGALYHDGMAKV 403 D AD+G+ IV G DG A V Sbjct: 235 NKIWNYCDTADTGKDYLCSIVWGET-SDGFADV 266 >gi|3763|lcl|protein:vir:107694 Length: 527 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003892;genbank:gi:45686309;genbank:GeneID :2773034 Length = 527 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/316 (21%), Positives = 132/316 (41%), Gaps = 35/316 (11%) Query: 103 RKINLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTH 162 R+ N ++ P GK+ + S+ P+ A+ R + ++A L +S+ RE+IS++ Sbjct: 64 RRGNTIFNVTPGSGKTEVFSIHLPVYAMLKCKKVRNLNVSFADSLVKRNSKRVREIISSN 123 Query: 163 GAGITDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITGMPADLLIID 222 P +D+ +++ K+ F + AGG + G +T + ++++D Sbjct: 124 EFQELWPCKFGTSKDE-EMQVLNEDGKVWFELISAAAGGRITGSRGGYMTPGFSGMVMLD 182 Query: 223 DPFK-NMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGEKLL 281 D K + M + R ++ L +++ R+ + II IQ R H +D ++ G + Sbjct: 183 DIDKPDDMFSKVKRERTHM-LLKNTIRSRRMHNETPIIAIQQRLHAQDSTWFMMNGGMGI 241 Query: 282 EPDERTWRHLNIPAIAEE----GIPDALKRPY--------------GTPMVSARDTDEAK 323 E D+ ++IPA+ E +PD L+ PY G S + E+ Sbjct: 242 EFDQ-----ISIPALVTEEYGKTLPDWLQ-PYFERDVLSSEYVELDGVKHYSFWPSKESV 295 Query: 324 RNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWF-------DPRLPQPPTYPAASVVG 376 + R + + T+ + YQ P G +F W+ D P P Y + Sbjct: 296 HDLLALR-EADQYTFDSQYQQKPIALGGSVFNSEWWTYYGSSLDADEPDPGKYDYRFITA 354 Query: 377 IDPADSGEGDETGIVC 392 +GE ++ + C Sbjct: 355 DTAQKTGELNDYTVFC 370 >gi|6559|lcl|protein:vir:104336 Length: 523 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398965;genbank:gi:81343949;genbank:GeneID :3778868 Length = 523 Score = 47.0 bits (110), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/232 (21%), Positives = 103/232 (44%), Gaps = 19/232 (8%) Query: 95 IERVLNSHRKINLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQPLADMHSRT 154 I+ +L RK + +++ P K+ L S+ P+ ++ R + +++ L +S+ Sbjct: 55 IDEILEGKRKDTI-INVAPGSAKTELFSIHFPVYSMIKIKKVRNLSLSFSDSLVKRNSKR 113 Query: 155 AREVISTHGAGITDPLT-GLAVEDKIGLRLAQGANKISFWSVEGGAGGLLAAGIGATITG 213 R++I + P + G +D+I + G K+ F S+ G + G +T Sbjct: 114 VRDLIKSKEFQELWPCSFGTCRDDEIQVLDENG--KVRFESISKAMAGQVTGSRGGYMTD 171 Query: 214 MPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDAS-----IILIQTRWHPE 268 + +++DDP K +A S R V + + +R A II +Q R H Sbjct: 172 DYSGCIMLDDPLKP-DDALSNVRREAVNMLLKNTIRSRRASSVKGKETPIIAVQQRLHVL 230 Query: 269 DLAGKVLAGEKLLEPDERTWRHLNIPAIAEEG----IPDALKRPYGTPMVSA 316 D + + +G+ ++ D + +PAI E +PD +K+ + ++S+ Sbjct: 231 DTSHFMESGQMGIKFDV-----VKVPAIVTEDYADTLPDWIKQQFIDDVLSS 277 >gi|5633|lcl|protein:vir:102358 Length: 322 # NCBI annotation: putative terminase large subunit # Family: family:all:144 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529553;genbank:gi:90592639;genbank:GeneID :3974490 Length = 322 Score = 45.1 bits (105), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 26/174 (14%) Query: 249 LTRLAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDERTWRHLNIPAIAEEG---IPDAL 305 L+RL II+I TRW +DLAG+ L K + + RH+N+ A+ E+G + L Sbjct: 2 LSRLEEGGKIIIIMTRWSSKDLAGRALEHYK---EEGKKVRHINMKALQEDGNMLCEEVL 58 Query: 306 KRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLP- 364 V A D A N YQ P + G ++ R +LP Sbjct: 59 SLNSYKSKVRAMGEDIASAN----------------YQQEPIDLKGCLYTRFKTYDKLPV 102 Query: 365 -QPPTYPAASVVG-IDPADSGEGDETGIVCGALYHDGMAKVALTHDRSGMFTSD 416 + S+ +D AD G IV G +Y+ + + + + + M T++ Sbjct: 103 DEKGNLLFTSIKAYVDTADEGADYLCSIVYG-VYNKEVYVLDVLYTKESMETTE 155 >gi|14353|lcl|protein:vir:3149 Length: 554 # NCBI annotation: unknown # Family: family:all:28407 # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665920;genbank:gi:22091106;genbank:GeneID :951323 Length = 554 Score = 41.2 bits (95), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 97/256 (37%), Gaps = 55/256 (21%) Query: 200 GGLLAAG-IGATITGMPADLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDASI 258 G +L AG +G I G A LLI+DD K + D+ +V W +V + + Sbjct: 165 GSILNAGWLGGGIEGDRAHLLILDDIIKEKGDGDT----EDVLDWIEAVCVPMVKDHGRT 220 Query: 259 ILIQTRWHPEDLAG--KVLAGEKLLEPDERTWRHLNIPAIA------------------E 298 ++I TR P+D+ + L G + E PAI + Sbjct: 221 VVIGTRKRPDDIYTHFRTLEGYEFDE----------YPAILDYWDQQFSADDDYEVRRPD 270 Query: 299 EGIPDALKRPYGTPMVSARDTDEAK--RNFAQTRKQVGERTWYALYQGSPRNPAGGIFQR 356 E + A+ P+ T EA+ R A R ++ + ++ Y +G + Sbjct: 271 EDLYTAVDDPWNTGETLQVLWPEARGPRWLADKRSKMADHRFWREYSLVIMGSSGDLIDA 330 Query: 357 AWFDPRLPQ------------PPTYPAA----SVVGIDPADSGEGDETGIVCGALYHDGM 400 D R+P PP Y A V+ DPA+S GD+ L DG Sbjct: 331 K--DVRVPAEDGGCSIGDRDPPPKYRAGPGEVVVLSHDPANSPTGDDAAFTVWLLQRDGR 388 Query: 401 AKVALTHDRSGMFTSD 416 ++ H +SGM +D Sbjct: 389 RRLLDCHAKSGMGPTD 404 >gi|12711|lcl|protein:vir:80169 Length: 565 # NCBI annotation: terminase # Family: family:all:543 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285801;genbank:gi:148747835;genbank:Ge neID:5220445 Length = 565 Score = 30.8 bits (68), Expect = 0.048, Method: Compositional matrix adjust. Identities = 39/163 (23%), Positives = 59/163 (36%), Gaps = 41/163 (25%) Query: 109 VSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVIST------- 161 V P KS++CSV L + NP+ R+++ T + L+ R R+ Sbjct: 61 VLAPRGHLKSTVCSVLYVLWRIYRNPDIRVLVGTNLKRLSRAFIRELRQYFEDTWLQQNV 120 Query: 162 -----HGAGITDPLTGLAVEDKIGLRLAQGANKISF--------------WSVEG----- 197 H G P L+ D+ + N + + WS+E Sbjct: 121 WNVRPHIEGALVP--ALSASDR--RKRNSQRNNVDYDEALATLTDDTKLIWSMEALQVIR 176 Query: 198 ----GAGGLLAAGIGATITGMPADLLIIDD--PFKNMMEADSA 234 + IG T+TG DLLI+DD F+N D A Sbjct: 177 PTVMKEPTVQTVSIGTTVTGDHYDLLILDDIVDFENSKTEDKA 219 >gi|9169|lcl|protein:vir:99234 Length: 550 # NCBI annotation: hypothetical protein # Family: family:all:543 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950450;genbank:gi:119953651;genbank:GeneI D:4643094 Length = 550 Score = 29.6 bits (65), Expect = 0.088, Method: Compositional matrix adjust. Identities = 53/253 (20%), Positives = 95/253 (37%), Gaps = 43/253 (16%) Query: 39 ETKNWPPEQRAAMLRSLRA-AETRATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIER 97 E + P+ +A+ +R RA A+ RT + H + A+ Y + + Sbjct: 26 EVAGFDPDPKASAVRRERASADYEYFARTYFPHYVKRGNALLHDY--------LYKRLPE 77 Query: 98 VLNSHRKINLSVSMPPQEGKSSLCS----VWAPLRALQLNPNRRIILATYAQPLADMHSR 153 +++ + +++ P KS+L S +W L + P II+ + Q + Sbjct: 78 LVDHPDGQHEAIAAPRGNAKSTLVSQIFVIWCVLTGRKHYP--LIIMDAFEQ------AA 129 Query: 154 TAREVISTHGAGITDPLTGLAVEDKIGLRLAQGANKISFWSV----EGGAGGLLAAGIGA 209 T E I L ++ + QGA K W V + G G Sbjct: 130 TMLEAIKAE----------LEFNPRLAMDFPQGAGKGRVWQVGTIVTANDAKVQVFGSGK 179 Query: 210 TITGMPA-----DLLIIDDPFKNMMEADSATHRANVELWFSSVALTRLAPDAS--IILIQ 262 + G+ DL+I DD +N S R +E W L+ + D + +I+I Sbjct: 180 RMRGLRHGPHRPDLVIGDD-LENDENVRSPEQRDKLENWLKKTVLSLGSADDTMDVIIIG 238 Query: 263 TRWHPEDLAGKVL 275 T H + + ++L Sbjct: 239 TILHYDSVLSRLL 251 >gi|16205|lcl|protein:vir:1554 Length: 587 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052122;swissprot:trembl:q9t0z4;genbank:gi :9634048;uniprot:Q9T0Z4;genbank:GeneID:1262409 Length = 587 Score = 26.6 bits (57), Expect = 0.91, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 204 AAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWF---SSVALTRLAPDASIIL 260 + GI +TG AD++I DD + ++SAT A +LW AL + P + +I Sbjct: 143 SVGITGQLTGSRADIIIADDV---EIPSNSATQGAREKLWTLVQEFAALLKPLPTSRVIY 199 Query: 261 IQT 263 + T Sbjct: 200 LGT 202 >gi|13826|lcl|protein:vir:3376 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523347;swissprot:trembl:q8w5t4;genbank:gi :17570838;uniprot:Q8W5T4;genbank:GeneID:927460 Length = 586 Score = 26.6 bits (57), Expect = 0.95, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 204 AAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWF---SSVALTRLAPDASIIL 260 + GI +TG AD++I DD + ++SAT A +LW AL + P + +I Sbjct: 142 SVGITGQLTGSRADIIIADDV---EIPSNSATQGAREKLWTLVQEFAALLKPLPTSRVIY 198 Query: 261 IQT 263 + T Sbjct: 199 LGT 201 >gi|6388|lcl|protein:vir:98470 Length: 536 # NCBI annotation: hypothetical protein # Family: family:all:1551 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958275;genbank:gi:41057249;genbank:GeneID :2732854 Length = 536 Score = 26.6 bits (57), Expect = 0.95, Method: Compositional matrix adjust. Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%) Query: 37 FEETKNWPPEQRAAMLRSLRAAETRATVRTKYRHPAEMAAAVTPGYRITPALAMISTSIE 96 F +T N P + RA L + A + + R +++ V PG RI Sbjct: 283 FWDTSNDPQDLRADFLNQITHASDAWLSQPEVRASSDLGKVVQPGDRIVLGFDGSRKRSR 342 Query: 97 RVLNSHRKINLSVSMPPQEGKSSLCSVWAPLRALQLNPNRR 137 V ++ I +S +G VW L+L P+ R Sbjct: 343 GVTDATALIGCRLS----DGHLFTLGVWEQPPRLELGPDGR 379 >gi|18462|lcl|protein:vir:2213 Length: 586 # NCBI annotation: DNA maturation protein # Family: family:all:697 # MgeID: mge:49 # MgeName: T7 # Cross-refs: genbank:acc:NP_042010;swissprot:sw:p03694;genbank:gi:962 7482;goa:P03694;uniprot:P03694;genbank:GeneID:1261062 Length = 586 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 6/63 (9%) Query: 204 AAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELWF---SSVALTRLAPDASIIL 260 + GI +TG AD++I DD + ++SAT A +LW AL + P + +I Sbjct: 142 SVGITGQLTGSRADIIIADDV---EIPSNSATMGAREKLWTLVQEFAALLKPLPSSRVIY 198 Query: 261 IQT 263 + T Sbjct: 199 LGT 201 >gi|16077|lcl|protein:vir:4155 Length: 468 # NCBI annotation: large terminase subunit # Family: family:all:144 # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046964;genbank:gi:9630534;genbank:GeneID: 1261708 Length = 468 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%) Query: 329 TRKQVGERTWYALYQGSPRNPAGGIFQRAWFDPRLPQPPTYPAASVVGIDPA 380 TR+Q+ + W QG G+F+R WF+ + PP SV D A Sbjct: 255 TRRQLKDGDWDVTLQG-------GVFKREWFEV-IDSPPNGLVMSVRYWDFA 298 >gi|14466|lcl|protein:vir:3519 Length: 469 # NCBI annotation: P18 # Family: family:all:54 # MgeID: mge:72 # MgeName: APSE-1 # Cross-refs: genbank:acc:NP_050979;genbank:gi:9633565;genbank:GeneID: 1262312 Length = 469 Score = 25.0 bits (53), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 324 RNFAQTRKQVGERTWYALYQG-SPRNPAGGIFQRAWFDP------RLPQPPTYPAASVVG 376 +N AQ K+ + W +Y G N + Q W + +L P+ VV Sbjct: 185 KNDAQKMKRENYKKWRHVYGGECDANYEDALIQPEWVEAAIDAHIKLGFKPS--GIRVVT 242 Query: 377 IDPADSGEGDE 387 DPADSG+ ++ Sbjct: 243 FDPADSGQDEK 253 >gi|7204|lcl|protein:vir:100065 Length: 577 # NCBI annotation: DNA maturase beta subunit # Family: family:all:697 # MgeID: mge:1604 # MgeName: P-SSP7 # Cross-refs: genbank:acc:YP_214228;genbank:gi:61806451;genbank:GeneID :3294745 Length = 577 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 204 AAGIGATITGMPADLLIIDD 223 + GI +TG ADL+I+DD Sbjct: 134 SVGITGQLTGSRADLMILDD 153 >gi|16146|lcl|protein:vir:10462 Length: 586 # NCBI annotation: DNA maturase B # Family: family:all:697 # MgeID: mge:184 # MgeName: phiA1122 # Cross-refs: genbank:acc:NP_848309;genbank:gi:30387500;genbank:GeneID :1733974 Length = 586 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%) Query: 204 AAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELW 243 + GI +TG AD++I DD + ++SAT A +LW Sbjct: 142 SVGITGQLTGSRADIIIADDV---EIPSNSATMGAREKLW 178 >gi|3734|lcl|protein:vir:94555 Length: 585 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1516 # MgeName: Berlin # Cross-refs: genbank:acc:YP_919024;genbank:gi:119637788;genbank:GeneI D:5179315 Length = 585 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%) Query: 204 AAGIGATITGMPADLLIIDDPFKNMMEADSATHRANVELW---FSSVALTRLAPDASIIL 260 + GI +TG AD++I DD + +S+T A +LW AL + P + +I Sbjct: 142 SVGITGQLTGSRADIIIADDV---EVPGNSSTSSAREKLWTLVTEFAALLKPLPTSRVIY 198 Query: 261 IQT 263 + T Sbjct: 199 LGT 201 >gi|22566|lcl|protein:vir:107279 Length: 1007 # NCBI annotation: gp242 # Family: family:all:11526 # MgeID: mge:1550 # MgeName: Catera # Cross-refs: genbank:acc:YP_656220;genbank:gi:109393421;genbank:GeneI D:4156748 Length = 1007 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 61/163 (37%), Gaps = 37/163 (22%) Query: 252 LAPDASIILIQTRWHPEDLAGKVLAGEKLLEPDE---------RTWRHLNIPAIAEEGIP 302 LAPD ++ RW P G V AG++L+ DE R WR + + E P Sbjct: 290 LAPDTRVLTEDLRWVP---VGSVRAGDRLVGFDEHIPGGKGSYRAWRQSIVLSAQEIQAP 346 Query: 303 DALKRPYGTPMVSARDTDEAKRNFAQTRKQVGERTWYALY---QGSPRNPAGGIFQ---R 356 +V T+ KR + G TW + +G +N G R Sbjct: 347 RY-------EIV----TESGKRIVS-----TGAHTWLSRKPAAKGRGKNRGSGALTPILR 390 Query: 357 AWFDPRLPQPPTYPAASVVGIDPADSGEGDETGIVCGALYHDG 399 W R + +G+DP ++ E E G + G + +G Sbjct: 391 WW---RTDELRPGDEIKTMGVDPWETDESREAGYLAGFMDGEG 430 >gi|18252|lcl|protein:vir:4193 Length: 467 # NCBI annotation: putative large terminase subunit # Family: family:all:144 # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071818;genbank:gi:11863101;genbank:GeneID :1257603 Length = 467 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 7/32 (21%) Query: 329 TRKQVGERTWYALYQGSPRNPAGGIFQRAWFD 360 TR+Q+ E W QG G+F+R WF+ Sbjct: 255 TRRQLKEGDWDVSIQG-------GVFRREWFE 279 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 25.0 bits (53), Expect = 2.7, Method: Compositional matrix adjust. Identities = 40/203 (19%), Positives = 75/203 (36%), Gaps = 29/203 (14%) Query: 106 NLSVSMPPQEGKSSLCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAG 165 N + +P KS + + W + +P I+ + LA+ + ++++ Sbjct: 71 NKLIMLPRAHLKSHMVATWCAW-IITRHPEVTILYISATATLAETQLYAVKNILAS---S 126 Query: 166 ITDPLTGLAVEDKIGLRLAQGANKISFWSVEGGAGGL-----LAAGIGATITGMPADLLI 220 + + + + G R +N +S V+ G+ AG+ TG AD+++ Sbjct: 127 VYNRYFPEYIHPQEGKREKWSSNAMSIDHVQRKKEGIRDATIATAGLTTNTTGWHADIIV 186 Query: 221 IDDPF--KNMMEADSATHRANVELWFSSVALTRLAPDASIILIQTRWHPEDLAGKVLAGE 278 DD +N D R +V+ S R A ++ TR+HP D+ Sbjct: 187 ADDLVVPENAYTEDG---RESVQKKSSQFTSIRNAGGFTMAC-GTRYHPSDIYA------ 236 Query: 279 KLLEPDERTWRHLNIPAIAEEGI 301 TWR +EG+ Sbjct: 237 --------TWRSQKYDIFDDEGM 251 >gi|11501|lcl|protein:vir:78718 Length: 574 # NCBI annotation: DNA packaging protein # Family: family:all:697 # MgeID: mge:1856 # MgeName: Syn5 # Cross-refs: genbank:acc:YP_001285469;genbank:gi:148724503;genbank:Ge neID:5220189 Length = 574 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 20/114 (17%) Query: 116 GKSSLCSVWAPLRALQLNPNRRIILATYAQPLADMHSRTAREVISTHGAGITDPLTGLAV 175 GKS + + + L L ++P+R+I++ + ++ AD S +++I L + Sbjct: 57 GKSWITAAFV-LWVLFVDPDRKIMVISASKERADNFSIFCQKLI-------------LDI 102 Query: 176 EDKIGLRLAQGANKISFWSVEGG------AGGLLAAGIGATITGMPADLLIIDD 223 E LR + S S + G A + + GI +TG A L++ DD Sbjct: 103 EWLSHLRPRDSDQRWSRISFDVGPAKPHQAPSVKSVGITGQMTGSRAHLMVFDD 156 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 456 IHNEAVAKRKSGALLTPVEQRALTDIPPFQIKPWRGANKADAVARAGGLSQSLET 510 +H++ A+ K A T E +IP I W+ K D ++ G + +LE+ Sbjct: 23 LHDKREAQSKYWAGYTVTEISRQLNIPVSTIASWKKREKWDEISPVGRVEATLES 77 >gi|9605|lcl|protein:vir:97240 Length: 510 # NCBI annotation: hypothetical protein ORF027 # Family: family:all:7264 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294535;genbank:gi:149408256;genbank:Ge neID:5237105 Length = 510 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 296 IAEEGIPDALKRPYGTPMVSARDTDEAKRNFAQTRKQVGE 335 +AE G ++ YG + + RD + KR Q + +G+ Sbjct: 260 VAETGTAKTIQLFYGNVIKNERDANLIKRRTYQLERTLGQ 299 >gi|4214|lcl|protein:vir:94726 Length: 575 # NCBI annotation: maturation protein # Family: family:all:697 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338131;genbank:gi:77118209;genbank:GeneID :3707752 Length = 575 Score = 23.5 bits (49), Expect = 7.7, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 204 AAGIGATITGMPADLLIIDD 223 + GI +TG AD+LI DD Sbjct: 132 SVGITGQLTGSRADILIADD 151 >gi|3994|lcl|protein:vir:99686 Length: 586 # NCBI annotation: DNA packaging protein B # Family: family:all:697 # MgeID: mge:1523 # MgeName: VP4 # Cross-refs: genbank:acc:YP_249597;genbank:gi:68299748;genbank:GeneID :3800001 Length = 586 Score = 23.5 bits (49), Expect = 7.9, Method: Compositional matrix adjust. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 204 AAGIGATITGMPADLLIIDD 223 + GI +TG AD+LI DD Sbjct: 142 SVGITGQLTGSRADILIADD 161 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 23.1 bits (48), Expect = 9.5, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Query: 143 YAQPLADMHSRTAREVISTHGA-GITDPLTGLAVEDKIGL 181 YA P A SRT + HG + P TG +++++ L Sbjct: 401 YADPAAPEASRTLETIFRQHGKRARSRPHTGGDIDNRLNL 440 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.317 0.132 0.398 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 255,289 Number of Sequences: 514 Number of extensions: 11154 Number of successful extensions: 121 Number of sequences better than 100.0: 45 Number of HSP's better than 100.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 50 length of query: 583 length of database: 206,069 effective HSP length: 77 effective length of query: 506 effective length of database: 166,491 effective search space: 84244446 effective search space used: 84244446 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 40 (20.0 bits)