BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:94084|NCBI_annot:ORF009|genbank:acc:YP_2 40228;genbank:gi:66395894;genbank:GeneID:5133253 (407 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF... 844 0.0 gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: la... 844 0.0 gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hyp... 416 e-118 gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp4... 408 e-116 gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: pu... 357 e-100 gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: sim... 336 3e-94 gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF... 336 3e-94 gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF... 334 9e-94 gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF... 333 2e-93 gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: ter... 166 5e-43 gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: te... 125 6e-31 gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: pu... 117 3e-28 gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: lar... 63 7e-12 gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF... 63 7e-12 gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: lar... 63 8e-12 gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: ph... 63 8e-12 gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF... 62 1e-11 gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: te... 62 1e-11 gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: ter... 60 4e-11 gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: put... 60 4e-11 gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: pu... 52 1e-08 gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: Te... 52 2e-08 gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: put... 49 2e-07 gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: OR... 47 6e-07 gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hyp... 43 7e-06 gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: t... 41 3e-05 gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: ter... 38 3e-04 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 36 0.001 gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: ter... 35 0.002 gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: ph... 33 0.005 gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: termin... 30 0.037 gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: put... 29 0.080 gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: term... 28 0.21 gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2... 27 0.36 gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp... 27 0.62 gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: Pa... 25 1.4 gi|2602|lcl|protein:vir:94128 Length: 185 # NCBI annotation: ORF... 24 3.4 gi|3534|lcl|protein:vir:105912 Length: 185 # NCBI annotation: ma... 24 3.4 gi|7580|lcl|protein:vir:96311 Length: 185 # NCBI annotation: ORF... 24 3.4 gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6... 24 3.5 gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF... 24 3.7 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 23 4.7 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 23 5.2 gi|19603|lcl|protein:vir:4076 Length: 205 # NCBI annotation: maj... 23 5.6 gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: maj... 23 6.9 gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hyp... 23 8.6 >gi|2589|lcl|protein:vir:94084 Length: 407 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240228;genbank:gi:66395894;genbank:GeneID :5133253 Length = 407 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/407 (100%), Positives = 407/407 (100%) Query: 1 MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEG 60 MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEG Sbjct: 1 MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEG 60 Query: 61 IETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA 120 IETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA Sbjct: 61 IETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA 120 Query: 121 IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPK 180 IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPK Sbjct: 121 IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPK 180 Query: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI Sbjct: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 Query: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD Sbjct: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 Query: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM Sbjct: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 Query: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK 407 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK Sbjct: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK 407 >gi|3523|lcl|protein:vir:105897 Length: 407 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004370;genbank:gi:122891825;genbank:Ge neID:4712368 Length = 407 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/407 (100%), Positives = 407/407 (100%) Query: 1 MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEG 60 MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEG Sbjct: 1 MNKLKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEG 60 Query: 61 IETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA 120 IETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA Sbjct: 61 IETPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA 120 Query: 121 IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPK 180 IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPK Sbjct: 121 IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPK 180 Query: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI Sbjct: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 Query: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD Sbjct: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 Query: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM Sbjct: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 Query: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK 407 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK Sbjct: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKPERLRRGK 407 >gi|16780|lcl|protein:vir:2731 Length: 411 # NCBI annotation: hypothetical protein # Family: family:all:54 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695104;genbank:gi:23455873;genbank:GeneID :955606 Length = 411 Score = 416 bits (1068), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/396 (52%), Positives = 272/396 (68%), Gaps = 10/396 (2%) Query: 4 LKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIET 63 L LYT +Q+E+L DWF+ HGAKR GKT++NND F+ EL RVRKIAD I+ Sbjct: 3 LSKLYTKRQLEVLNYIWNHDWFICGLHGAKRAGKTVVNNDTFVTELSRVRKIADRMAIDE 62 Query: 64 PQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRG 123 P YILAG + IQ NVL EL NKYG E +DK+ SF+ GV+VVQ +SG+ RG Sbjct: 63 PIYILAGTSSTAIQNNVLQELYNKYGFEPKYDKHGSFVFCGVKVVQVYTGSISGLKRARG 122 Query: 124 MTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGI 183 T+FGAY+NEASLA+E VF EI SRCSG GAR++ D+NPD+P HWL +DYI D K I Sbjct: 123 FTAFGAYVNEASLANELVFKEIISRCSGDGARVVWDSNPDNPNHWLNRDYIGKNDGK--I 180 Query: 184 LSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKAD 243 + FKLDDN FL+ RY +SIKA+TP G FY+R+I G+W +G +YAD+D K Sbjct: 181 IDFSFKLDDNTFLSKRYIDSIKAATPKGKFYDRDILGLWTVAEGAIYADYDS-----KIH 235 Query: 244 ELDDIP-IKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIV 302 +D++P +K YF G+DWGY HYGSIV++G G+D NFY ++ A QFK ID WV A+ + Sbjct: 236 VVDELPEMKRYFGGIDWGYTHYGSIVIVGEGVDNNFYLVDGVAAQFKEIDWWVEQARKLT 295 Query: 303 SRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDR 362 YGNI FY D+ARPE++ F +NA+KS ++G+E +AKLFK+ KL V + R Sbjct: 296 GIYGNIPFYADSARPEHVARFENEGFDIMNANKSVIAGIELIAKLFKEKKLYVKRGFVPR 355 Query: 363 FKQEVFKYVW--HPTNGEPIKEFDDVLDSLRYAIYT 396 F E+++Y W + T EP+KEFDDVLDS+RYAIY+ Sbjct: 356 FFDEIYQYRWKENSTKDEPLKEFDDVLDSVRYAIYS 391 >gi|13692|lcl|protein:vir:4897 Length: 411 # NCBI annotation: gp411 # Family: family:all:54 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056675;genbank:gi:9635008;genbank:GeneID: 1262679 Length = 411 Score = 408 bits (1048), Expect = e-116, Method: Compositional matrix adjust. Identities = 207/396 (52%), Positives = 268/396 (67%), Gaps = 10/396 (2%) Query: 4 LKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIET 63 L LYT +Q+E+L DWF+ HGAKR KT++NND F+ EL RVRKIAD G++ Sbjct: 3 LSKLYTKRQLEVLNYIWNHDWFICGLHGAKRASKTVVNNDTFVTELSRVRKIADRLGVDE 62 Query: 64 PQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRG 123 P YILAG + IQ NVL EL NKYG E +DK+ SF+ GV+VVQ +SG+ RG Sbjct: 63 PIYILAGTSSTAIQNNVLQELYNKYGFEPKYDKHGSFVFCGVKVVQVYTGSISGLKRARG 122 Query: 124 MTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGI 183 T+FGAY+NEASLA+E VF EI SRCSG GAR++ D+NPD+P HWL +DYI D K I Sbjct: 123 FTAFGAYVNEASLANEFVFKEIISRCSGDGARVVWDSNPDNPNHWLNRDYIGKNDGK--I 180 Query: 184 LSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKAD 243 + FKLDDN FL+ RY +SIKA TP G FY+R+I G W +G +YAD+D K Sbjct: 181 IDFSFKLDDNTFLSKRYIDSIKAVTPKGKFYDRDILGHWTVAEGAIYADYDS-----KIH 235 Query: 244 ELDDIP-IKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIV 302 +D++P +K YF G+DWGY HYGSIV++G G+D NFY ++ QFK ID WV A+ + Sbjct: 236 VVDELPEMKRYFGGIDWGYTHYGSIVIVGEGVDNNFYLVDGVRAQFKEIDWWVEQARKLT 295 Query: 303 SRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDR 362 YGNI FY D+ARPE++ F NA+KS ++G+E +AKLFK+ KL V + R Sbjct: 296 GIYGNIPFYADSARPEHVARFENEGFDISNANKSVIAGIELIAKLFKEQKLYVKRGFVPR 355 Query: 363 FKQEVFKYVW--HPTNGEPIKEFDDVLDSLRYAIYT 396 F E+++Y W + T EP+KEFDDVLDS+RYAIY+ Sbjct: 356 FFDEIYQYRWKENSTKDEPLKEFDDVLDSVRYAIYS 391 >gi|2931|lcl|protein:vir:105460 Length: 409 # NCBI annotation: putative phage terminase large subunit B # Family: family:all:54 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529870;genbank:gi:90592610;genbank:GeneID :3974524 Length = 409 Score = 357 bits (915), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/401 (45%), Positives = 258/401 (64%), Gaps = 7/401 (1%) Query: 4 LKSLYTDKQIEILKQTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIET 63 + + T+KQ ++L DW LI GA R GKTI+NN LF+ EL R+ +++ + Sbjct: 3 IDEILTNKQQQVLNSYLHDDWKFLILTGAFRAGKTIMNNYLFIMELKRIARLSIQRKDPH 62 Query: 64 PQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRG 123 PQYILAG + +I NV+ + + +GI D++ + LFG+ +V + + G+G IRG Sbjct: 63 PQYILAGYSSNSIYTNVISAIESYFGITMKTDRHGHYHLFGIDIVPSYTGSIRGVGFIRG 122 Query: 124 MTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGI 183 MTS+GAY+NEASLA +VF EI RCS GARI+ DTNPD P HWL DYI+N DPKA I Sbjct: 123 MTSYGAYVNEASLATHDVFQEILQRCSIEGARIICDTNPDIPTHWLKTDYIDNHDPKARI 182 Query: 184 LSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKAD 243 S F +DDN FL+ Y ESIKA+TP GMFY+R I G WV+GDG+VY DF+ + I + Sbjct: 183 KSFTFTIDDNTFLSKDYVESIKAATPRGMFYDRGILGQWVTGDGIVYQDFNKDTMVIPKN 242 Query: 244 ELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVS 303 + D +Y+ GVDWGYEH I+L+G DGN Y +E++ + KFI+ WV +A+++ + Sbjct: 243 RVPD--GLDYYVGVDWGYEHPNPIILLGDDKDGNTYVLEDYTQKHKFINYWVKVAQNLQT 300 Query: 304 RYG-NINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDR 362 R+G N+ FY D+ARP+ + EF+ + L INA+K+ L G+E VA+ ++ K V+ Sbjct: 301 RFGRNLIFYADSARPDNVNEFQSNGLNCINANKNVLPGIECVARKMREGKFYVVDTASSG 360 Query: 363 FKQEVFKYVWHPTNGEPIKEFD----DVLDSLRYAIYTHTK 399 E+++Y W + G P+KE D D LD++RYAIY+ K Sbjct: 361 LLDEIYQYAWDESTGLPLKENDVRHNDRLDAIRYAIYSRNK 401 >gi|14951|lcl|protein:vir:1235 Length: 405 # NCBI annotation: similar to phage O1205 ORF26 ( putative large subunit terminase) # Family: family:all:54 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510934;genbank:gi:17426268;genbank:GeneID :927381 Length = 405 Score = 336 bits (861), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 177/400 (44%), Positives = 249/400 (62%), Gaps = 20/400 (5%) Query: 14 EILKQTQKQDWFMLIN--------HGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQ 65 E+L Q++ W IN GAKR GKT + LFL + + ++G+ Sbjct: 7 EMLNPKQQEVWNCFINDKPKVLIASGAKRAGKTYVFILLFLMHIATYK----DKGL---N 59 Query: 66 YILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMT 125 +I+ GAT +I++N+L ++ G E DK N+ +FG +V RG T Sbjct: 60 FIIGGATQASIRRNILDDMELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFT 119 Query: 126 SFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENT-----DPK 180 S GA++NE + H E+ SRCS GARIL+DTNP++P H + KDYI+ + + + Sbjct: 120 SAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGR 179 Query: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 I + QF L DN FL++ Y ESI ASTP+GMF +R+I G WVS +GVVY DF + I Sbjct: 180 LNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYI 239 Query: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 K +E IK +AGVDWGYEHYGSI+++ DGN Y IEEHAH+ K IDDWV IAK Sbjct: 240 KEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKG 299 Query: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 ++ R+G+I FYCDTARPE+I FRR +++A ADK+ ++G+E +++LFK NK+ ++ + + Sbjct: 300 VIKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKV 359 Query: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKP 400 FK+E++ YVW EP+K DD LD+LRYA+YT KP Sbjct: 360 SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYTANKP 399 >gi|1596|lcl|protein:vir:93748 Length: 403 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240453;genbank:gi:66396122;genbank:GeneID :5133517 Length = 403 Score = 336 bits (861), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 177/400 (44%), Positives = 249/400 (62%), Gaps = 20/400 (5%) Query: 14 EILKQTQKQDWFMLIN--------HGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQ 65 E+L Q++ W IN GAKR GKT + LFL + + ++G+ Sbjct: 5 EMLNPKQQEVWNCFINDKPKVLIASGAKRAGKTYVFILLFLMHIATYK----DKGL---N 57 Query: 66 YILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMT 125 +I+ GAT +I++N+L ++ G E DK N+ +FG +V RG T Sbjct: 58 FIIGGATQASIRRNILDDMELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFT 117 Query: 126 SFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENT-----DPK 180 S GA++NE + H E+ SRCS GARIL+DTNP++P H + KDYI+ + + + Sbjct: 118 SAGAFLNEGTALHNMFIKEVFSRCSYKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGR 177 Query: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 I + QF L DN FL++ Y ESI ASTP+GMF +R+I G WVS +GVVY DF + I Sbjct: 178 LNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYI 237 Query: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 K +E IK +AGVDWGYEHYGSI+++ DGN Y IEEHAH+ K IDDWV IAK Sbjct: 238 KEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKG 297 Query: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 ++ R+G+I FYCDTARPE+I FRR +++A ADK+ ++G+E +++LFK NK+ ++ + + Sbjct: 298 VIKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKV 357 Query: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKP 400 FK+E++ YVW EP+K DD LD+LRYA+YT KP Sbjct: 358 SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYTANKP 397 >gi|4261|lcl|protein:vir:94806 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240530;genbank:gi:66396200;genbank:GeneID :5133586 Length = 402 Score = 334 bits (857), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 176/400 (44%), Positives = 248/400 (62%), Gaps = 20/400 (5%) Query: 14 EILKQTQKQDWFMLIN--------HGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQ 65 E+L Q++ W IN GAKR GKT + LFL + + ++G+ Sbjct: 4 EMLNPKQQEVWNCFINDKPKVLIASGAKRAGKTYVFILLFLMHIATYK----DKGL---N 56 Query: 66 YILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMT 125 +I+ GAT +I++N+L ++ G E DK N+ +FG +V RG T Sbjct: 57 FIIGGATQASIRRNILDDMELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFT 116 Query: 126 SFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENT-----DPK 180 S GA++NE + H E+ SRCS GARIL+DTNP++P H + KDYI+ + + + Sbjct: 117 SAGAFLNEGTALHNMFIKEVFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGR 176 Query: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 I + QF L DN FL++ Y ESI ASTP+GMF +R+I G WVS +GVVY DF + I Sbjct: 177 LNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYI 236 Query: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 +E IK +AGVDWGYEHYGSI+++ DGN Y IEEHAH+ K IDDWV IAK Sbjct: 237 TEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKG 296 Query: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 ++ R+G+I FYCDTARPE+I FRR +++A ADK+ ++G+E +++LFK NK+ ++ + + Sbjct: 297 VIKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKIFIIKEKV 356 Query: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKP 400 FK+E++ YVW EP+K DD LD+LRYA+YT KP Sbjct: 357 SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYTANKP 396 >gi|9935|lcl|protein:vir:97273 Length: 402 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240605;genbank:gi:66396276;genbank:GeneID :5133629 Length = 402 Score = 333 bits (855), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 176/400 (44%), Positives = 248/400 (62%), Gaps = 20/400 (5%) Query: 14 EILKQTQKQDWFMLIN--------HGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQ 65 E+L Q++ W IN GAKR GKT + LFL + + ++G+ Sbjct: 4 EMLNPKQQEIWNCFINDKPKVLIASGAKRAGKTYVFILLFLMHIATYK----DKGL---N 56 Query: 66 YILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMT 125 +I+ GAT +I++N+L ++ G E DK N+ +FG +V RG T Sbjct: 57 FIIGGATQASIRRNILDDMELILGRELTLDKSNAVKIFGNKVYVFDGQNSDAWKKARGFT 116 Query: 126 SFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENT-----DPK 180 S GA++NE + H E+ SRCS GARIL+DTNP++P H + KDYI+ + + + Sbjct: 117 SAGAFLNEGTALHNMFIKEVFSRCSHKGARILIDTNPENPMHPVKKDYIDKSGQRLSNGR 176 Query: 181 AGILSHQFKLDDNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTI 240 I + QF L DN FL++ Y ESI ASTP+GMF +R+I G WVS +GVVY DF + I Sbjct: 177 LNIKAFQFTLFDNTFLDEEYIESIIASTPTGMFTDRDIYGKWVSAEGVVYKDFKEKVHYI 236 Query: 241 KADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKD 300 +E IK +AGVDWGYEHYGSI+++ DGN Y IEEHAH+ K IDDWV IAK Sbjct: 237 TEEEFKTKQIKRKYAGVDWGYEHYGSIMVVAEDFDGNKYVIEEHAHRHKEIDDWVAIAKG 296 Query: 301 IVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNM 360 ++ R+G+I FYCDTARPE+I FRR +++A ADK+ ++G+E +++LFK NK+ ++ + + Sbjct: 297 VIKRHGDILFYCDTARPEHIERFRREKIKARYADKAVIAGIEVISRLFKLNKISIIKEKV 356 Query: 361 DRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYAIYTHTKP 400 FK+E++ YVW EP+K DD LD+LRYA+YT KP Sbjct: 357 SLFKEEIYNYVWKDNADEPVKLNDDTLDALRYAVYTANKP 396 >gi|8015|lcl|protein:vir:96495 Length: 195 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238487;genbank:gi:66391763;genbank:GeneID :5176917 Length = 195 Score = 166 bits (420), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 84/178 (47%), Positives = 117/178 (65%), Gaps = 8/178 (4%) Query: 222 WVSGDGVVYADFDLNENTIKADELDDIP-IKEYFAGVDWGYEHYGSIVLIGRGIDGNFYF 280 W +G +YAD+D + + D++P +K F G+DWGY HYGSIV++G G+DGNFY Sbjct: 3 WTVAEGAIYADYDSKIHVV-----DELPEMKRCFGGIDWGYTHYGSIVVVGEGVDGNFYL 57 Query: 281 IEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHRLRAINADKSKLSG 340 ++ A QFK ID WV A+ + Y NI FY D+ARPE++ F NA+KS ++G Sbjct: 58 LDGVAAQFKEIDWWVEQARKLTGIYRNIPFYADSARPEHVARFESEGFDISNANKSVIAG 117 Query: 341 VEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVW--HPTNGEPIKEFDDVLDSLRYAIYT 396 +E +AKLFK+ KL V + RF E+++Y W + T EP+KEFDDVLDS+RYAIY+ Sbjct: 118 IELIAKLFKEEKLYVKRGFVPRFFDEIYQYRWKENSTKDEPLKEFDDVLDSVRYAIYS 175 >gi|1165|lcl|protein:vir:102941 Length: 421 # NCBI annotation: terminase, large subunit # Family: family:all:54 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945278;genbank:gi:39653713;goa:Q708N4;int erpro:IPR004921;interpro:IPR006437;uniprot:Q708N4;genban k:GeneID:2672855 Length = 421 Score = 125 bits (315), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 106/398 (26%), Positives = 181/398 (45%), Gaps = 50/398 (12%) Query: 27 LINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQYILAGATLGTIQKNVL---IE 83 +I GA R+GKT+ + F+ M + + G T+G+ +NVL + Sbjct: 39 IIADGAIRSGKTVSMSLAFVIWAM--------TSFNHQNFAMCGKTIGSFNRNVLKLLLV 90 Query: 84 LTNKYGIEFNF------------DKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYI 131 + G + + D N F +FG G + S I+G+T G + Sbjct: 91 MIQSRGFSYVYHRTDNLIEITKGDVSNDFYIFG------GKDE-SSQDLIQGLTLAGIFF 143 Query: 132 NEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLD 191 +E +L E ++ RCS TG++ + NPD P HW ++I+ + K + H F +D Sbjct: 144 DEVALMPESFVNQGTGRCSVTGSKWWFNCNPDGPYHWFKVNWIDKAETKNMLYLH-FDMD 202 Query: 192 DNNFLNDRYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIK 251 DN L++ K+ + S G+FY+R I G+W +G+VY F +++ + L ++ Sbjct: 203 DNLSLSENIKKRYR-SQYQGVFYQRYIQGLWTVAEGIVYDMFSKDKHVVST--LPEMSKL 259 Query: 252 EYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVV-----IAKDIVSRYG 306 + VD+G ++ +L + I G +Y E+ + + D+ V A D+ + G Sbjct: 260 GKYVSVDYGTQNATVFLLWEKDIIGKYYLTREYYYSGR--DENVQKTNAEYADDLTAWLG 317 Query: 307 NIN---FYCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRF 363 + N D + +I E ++ + A + L G+ V + Q K+ V ++ Sbjct: 318 DTNIDRIIIDPSAASFIAELKKRGYKIKKARNNVLEGIRFVGSMLGQEKIAVHESCVNTL 377 Query: 364 KQEVFKYVW---HPTNGE--PIKEFDDVLDSLRYAIYT 396 K E YVW NGE PIK+FD +D+LRY YT Sbjct: 378 K-EFHAYVWDEKASANGEDKPIKQFDHAMDALRYFCYT 414 >gi|6886|lcl|protein:vir:106551 Length: 424 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958579;genbank:gi:41179257;genbank:GeneID :2717087 Length = 424 Score = 117 bits (293), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/417 (24%), Positives = 192/417 (46%), Gaps = 50/417 (11%) Query: 8 YTDKQIEILK-----QTQKQDWFMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIE 62 ++ KQ+++L Q Q+ +I G+ R GKT++ ++ M Sbjct: 11 FSRKQLQVLSWWSNPQILNQE--AIICDGSVRAGKTVVMALSYILWSM--------TNFS 60 Query: 63 TPQYILAGATLGTIQKNVLIELTNKYGIEFNFDKYNSFMLFGVQVVQTGHSKVSGIGA-- 120 Q+ +AG T+G+ ++NVL L + E ++ Y+S + + + GH+ I Sbjct: 61 GQQFGMAGKTIGSFRRNVLRPLRSMLESE-GYNVYDSRSENMITISKNGHTNFYFIFGGK 119 Query: 121 -------IRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDY 173 ++G+T G + +E +L + ++ +RCS TG+++ + NP P HW ++ Sbjct: 120 DEASQDLVQGITLAGFFFDEVALMPQSFVNQATARCSVTGSKMWFNCNPSGPFHWFKLNW 179 Query: 174 IENTDPKAGILSHQFKLDDNNFLN----DRYKESIKASTPSGMFYERNINGMWVSGDGVV 229 I+ K + H F + DN L+ +RY+ SG+FY+R I G+WV +GV+ Sbjct: 180 IDQMKDKRALRIH-FTMHDNPSLDSVTINRYERMY-----SGVFYQRYIQGLWVMSEGVI 233 Query: 230 YADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFK 289 Y +FD ++T+ +EL + ++Y+ D+G + + +L GR G +Y ++E+ + + Sbjct: 234 YDNFD--KDTMVVNELPN-HFEKYYVSCDYGTLNPTAFLLWGRN-HGVWYLVKEYYYSGR 289 Query: 290 FIDDWVV---IAKDIVSRYGNIN--FYCDTARPEYITEFRRHRLRAINADKSKLSGVEEV 344 D+ G+I D + + T R++ + A L G+ Sbjct: 290 TTSRQKTDEEYCHDLKEFLGDIRAEMIIDPSAASFSTTLRQNGFKVRKAKNDVLDGIRVT 349 Query: 345 AKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGE-----PIKEFDDVLDSLRYAIYT 396 + K+ + + FK E+ YVW E P+K+ D D++RY +YT Sbjct: 350 QTAMNEGKIKFSMNCPNLFK-ELASYVWDDKAAEHGEDKPVKQHDHACDAMRYFVYT 405 >gi|17691|lcl|protein:vir:9305 Length: 447 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803283;genbank:gi:29028593;genbank:GeneID :1258039 Length = 447 Score = 62.8 bits (151), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 25/266 (9%) Query: 152 TGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPS 210 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + Sbjct: 179 VNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRN 238 Query: 211 GMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLI 270 +Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 239 PAYYKIYALGEFATLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFI 292 Query: 271 GRGID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHR 327 ID Y IEE+ Q D+ + K + Y D+A + I E R Sbjct: 293 HSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQKSIAELRNLG 350 Query: 328 LRAINADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGE 378 L+ I K V + + Q +++V + ++ F Y W E Sbjct: 351 LKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNE 406 Query: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 P+ ++ +DSLRY++ +P R R Sbjct: 407 PVDTYNHCIDSLRYSVERFYRPVRKR 432 >gi|7301|lcl|protein:vir:96238 Length: 447 # NCBI annotation: ORF008 # Family: family:all:54 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239566;genbank:gi:66395301;genbank:GeneID :5132787 Length = 447 Score = 62.8 bits (151), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 25/266 (9%) Query: 152 TGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPS 210 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + Sbjct: 179 VNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRN 238 Query: 211 GMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLI 270 +Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 239 PAYYKIYALGEFATLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFI 292 Query: 271 GRGID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHR 327 ID Y IEE+ Q D+ + K + Y D+A + I E R Sbjct: 293 HSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAREEITADSAEQKSIAELRNLG 350 Query: 328 LRAINADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGE 378 L+ I K V + + Q +++V + ++ F Y W E Sbjct: 351 LKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNE 406 Query: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 P+ ++ +DSLRY++ +P R R Sbjct: 407 PVDTYNHCIDSLRYSVERFYRPVRKR 432 >gi|2779|lcl|protein:vir:99776 Length: 425 # NCBI annotation: large terminase # Family: family:all:54 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004302;genbank:gi:122891756;genbank:Ge neID:4712331 Length = 425 Score = 62.8 bits (151), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 25/266 (9%) Query: 152 TGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPS 210 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + Sbjct: 157 VNKQIFLIFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRN 216 Query: 211 GMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLI 270 +Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 217 PAYYKIYALGEFATLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFI 270 Query: 271 GRGID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHR 327 ID Y IEE+ Q D+ + K + Y D+A + I E R Sbjct: 271 HSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQKSIAELRNLG 328 Query: 328 LRAINADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGE 378 L+ I K V + + Q +++V + ++ F Y W E Sbjct: 329 LKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNE 384 Query: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 P+ ++ +DSLRY++ +P R R Sbjct: 385 PVDTYNHCIDSLRYSVERFYRPVRKR 410 >gi|9829|lcl|protein:vir:103950 Length: 425 # NCBI annotation: phage terminase large subunit # Family: family:all:54 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873987;genbank:gi:118430762;genbank:GeneI D:4525444 Length = 425 Score = 62.8 bits (151), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 25/266 (9%) Query: 152 TGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPS 210 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + Sbjct: 157 VNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRN 216 Query: 211 GMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLI 270 +Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 217 PAYYKIYALGEFATLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFI 270 Query: 271 GRGID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHR 327 ID Y IEE+ Q D+ + K + Y D+A + I E R Sbjct: 271 HSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQKSIAELRNLG 328 Query: 328 LRAINADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGE 378 L+ I K V + + Q +++V + ++ F Y W E Sbjct: 329 LKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNE 384 Query: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 P+ ++ +DSLRY++ +P R R Sbjct: 385 PVDTYNHCIDSLRYSVERFYRPVRKR 410 >gi|7643|lcl|protein:vir:96370 Length: 447 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239642;genbank:gi:66395379;genbank:GeneID :5132846 Length = 447 Score = 62.0 bits (149), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 25/266 (9%) Query: 152 TGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPS 210 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + Sbjct: 179 VNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRN 238 Query: 211 GMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLI 270 +Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 239 PAYYKIYALGEFSTLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFI 292 Query: 271 GRGID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHR 327 ID Y IEE+ Q D+ + K + Y D+A + I E R Sbjct: 293 HSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQKSIAELRNLG 350 Query: 328 LRAINADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGE 378 L+ I K V + + Q +++V + ++ F Y W E Sbjct: 351 LKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNE 406 Query: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 P+ ++ +DSLRY++ +P R R Sbjct: 407 PVDTYNHCIDSLRYSVERFYRPVRKR 432 >gi|11588|lcl|protein:vir:78831 Length: 447 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285355;genbank:gi:148717883;genbank:Ge neID:5246962 Length = 447 Score = 62.0 bits (149), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 116/266 (43%), Gaps = 25/266 (9%) Query: 152 TGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPS 210 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + Sbjct: 179 VNKQIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRN 238 Query: 211 GMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLI 270 +Y+ G + + D +V+ ++ + I DEL +P YF G+D+GY + S I Sbjct: 239 PAYYKIYALGEFSTLDKLVFPKYE--KRLINKDELRHLP--SYF-GLDFGYVNDPS-AFI 292 Query: 271 GRGID---GNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHR 327 ID Y IEE+ Q D+ + K + Y D+A + I E R Sbjct: 293 HSKIDVKKKKLYIIEEYVKQGMLNDEIANVIKQL--GYAKEEITADSAEQKSIAELRNLG 350 Query: 328 LRAINADKSKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPT------NGE 378 L+ I K V + + Q +++V + ++ F Y W E Sbjct: 351 LKRILPTKKGKGSVVQGLQFLMQFEIIVDERCFKTIEEFDN----YTWQKDKDTGEYTNE 406 Query: 379 PIKEFDDVLDSLRYAIYTHTKPERLR 404 P+ ++ +DSLRY++ +P R R Sbjct: 407 PVDTYNHCIDSLRYSVERFYRPVRKR 432 >gi|16299|lcl|protein:vir:3027 Length: 375 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438140;genbank:gi:16271803;genbank:GeneID :929285 Length = 375 Score = 60.5 bits (145), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 106 QVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARI-LVDTNPDH 164 +V G KV+ +GAI GM+ E +L H + E R R L D NP Sbjct: 50 RVYYKGGGKVNSVGAITGMSLGSVVFCEINLLHMDFIQECFRRTWAAKLRYHLADLNPPA 109 Query: 165 PEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMF-YERNINGMWV 223 P+H ++KD + + + +H + +DDN L K++I S + Y+R++ G V Sbjct: 110 PQHPVIKDVFDVQNTR---WTH-WTMDDNPILTAERKQNIINSLKKNPYLYKRDVLGQRV 165 Query: 224 SGDGVVYADFDLNENTIKADELDDIPIKEYFAG 256 GV+Y FD +N + D L P++ YF Sbjct: 166 MPQGVIYGLFDTEKNVL--DALIGEPVEMYFCA 196 >gi|16025|lcl|protein:vir:9814 Length: 403 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795576;genbank:gi:28876345;genbank:GeneID :1257867 Length = 403 Score = 60.1 bits (144), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 8/153 (5%) Query: 106 QVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARI-LVDTNPDH 164 +V G KV+ +GAI GM+ E +L H + E R R L D NP Sbjct: 78 RVYYKGGGKVNSVGAITGMSLGSVVFCEINLLHMDFIQECFRRTWAAKLRYHLADLNPPA 137 Query: 165 PEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSGMF-YERNINGMWV 223 P+H ++KD + + + +H + +DDN L K++I S + Y+R++ G V Sbjct: 138 PQHPVIKDVFDVQNTR---WTH-WTMDDNPILTAERKQNIINSLKKNPYLYKRDVLGQRV 193 Query: 224 SGDGVVYADFDLNENTIKADELDDIPIKEYFAG 256 GV+Y FD +N + D L P++ YF Sbjct: 194 MPQGVIYGLFDTEKNVL--DALIGEPVEMYFCA 224 >gi|11736|lcl|protein:vir:79016 Length: 417 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110720;genbank:gi:134287337;genbank:Ge neID:4955190 Length = 417 Score = 52.0 bits (123), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 36/315 (11%) Query: 98 NSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGA--- 154 NS + GV + K+ I +G ++ + EA+ E D + R G Sbjct: 108 NSIIFRGVNDAKQ-REKLKSINFSKGKLTW-VWCEEATELMESDIDILDDRLRGILTNPN 165 Query: 155 ---RILVDTNPDHPEHWLLKDYIE--NTDPKAGILSHQFKLDDNNFLNDRYKESI---KA 206 ++ NP HW+ + Y + N D I +H N F+++ Y + K Sbjct: 166 LYYQMTFTFNPVSATHWIKRKYFDYKNDD----IFTHHSTYLQNRFIDEAYYRRMQMRKE 221 Query: 207 STPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGS 266 P G Y+ G W G + ++ ++E +++ D++ + + D+G+ H Sbjct: 222 QDPEG--YKVYGLGEWGETGGAILKNYVIHEFPTESEYFDNMRLSQ-----DFGFNHANV 274 Query: 267 IVLIGRGIDGNFYFIEE-HAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRR 325 ++ IG DG Y E +AH+ + ++ + + + YCD+A P+ I ++ Sbjct: 275 VLRIGFK-DGELYICNEIYAHEMDTSE--IIKIANSIGLEKTLFMYCDSAEPDRIKMWKS 331 Query: 326 HRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTN------GEP 379 +A K S V+ KQ ++ V + K E+ ++ W EP Sbjct: 332 AGYKAKGVKKGPGS-VKAQIDYLKQLRIHVHPSCTNTIK-EIQQWKWKQDERTGLYLDEP 389 Query: 380 IKEFDDVLDSLRYAI 394 ++ DD + +LRY+I Sbjct: 390 VEFMDDAMAALRYSI 404 >gi|11622|lcl|protein:vir:78869 Length: 439 # NCBI annotation: TerL # Family: family:all:54 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468842;genbank:gi:157325434;genbank:Ge neID:5601865 Length = 439 Score = 51.6 bits (122), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/321 (21%), Positives = 128/321 (39%), Gaps = 43/321 (13%) Query: 111 GHSKVSGIGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGARI-LVDTNPDHPEHWL 169 G KV+ +GAI GM+ E +L H++ +E R R L + NP P H + Sbjct: 113 GGGKVNSVGAITGMSLGTVTFLEINLLHKDFIEECFRRTFAAKNRFHLAELNPPAPNHPV 172 Query: 170 LKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTP-SGMFYERNINGMWVSGDGV 228 L+ + N + + DN L++ K+ I S +R+ G V G+ Sbjct: 173 LEIF-SNYEKSGRYKWRHWTAKDNPALSEERKQEIYNEVKHSSYLLQRDWYGKRVLQKGI 231 Query: 229 VYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYG---SIVLIGRGIDGNFYF----I 281 +Y FD+ +N I +L+ PI+ F G D G + V+ DG++ + + Sbjct: 232 IYETFDMQKNQIP--KLEGRPIEMVFFG-DGGQQDATVCECYVITEHAADGHYKYKFNQV 288 Query: 282 EEHAH------QFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYI---TEFRRHRLRAIN 332 + H + K + V K + ++ + P +I + R L + Sbjct: 289 ASYYHSGRDTGEVKAGSTYAVEIKQFI-QWCMKEYEVPVNEPVFIDPACRWLREELEKVG 347 Query: 333 ADKSKLS---------------GVEEVAKLFKQNKLLVLYDNMDRFK-----QEVFKYVW 372 D + G+E + L + + L++ D++ QE+ YV Sbjct: 348 VDTAGADNNAHDVIGKAQGIEVGIERMQSLLSERRYLLVEQPNDQYDHYSWLQEIGMYVR 407 Query: 373 HPTNGEPIKEFDDVLDSLRYA 393 +G+P+ + + +D+ RYA Sbjct: 408 DENSGKPVDKNNHAMDTSRYA 428 >gi|15353|lcl|protein:vir:9921 Length: 425 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795683;genbank:gi:28876465;genbank:GeneID :1257982 Length = 425 Score = 48.5 bits (114), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/391 (20%), Positives = 175/391 (44%), Gaps = 41/391 (10%) Query: 25 FMLINHGAKRTGKTILNNDLFLRELMRVRKIADEEGIETPQYILAGATLG-TIQKNVLIE 83 F +++G +GK+ + +F + +++ A + P+ IL +G T++ +V + Sbjct: 34 FTEVHYGGASSGKS---HGVFQKIILK----ALNPKFKHPRKILVLRKVGATVRDSVFAD 86 Query: 84 LTNK---YGI----EFNFDKYNSFMLFGVQVVQTGHSKVSGIGAIRGMTSFGAYINEASL 136 + + +GI + N + + G + + G I +I+G++ + EAS Sbjct: 87 IMSNLSYFGILDKCKINMSAFRITLPNGAEFIFKGMDNPEKIKSIKGISD--VVMEEASE 144 Query: 137 AHEEVFDEIKSRCSGTG---ARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDN 193 + + ++ R +I + NP +W+ K + T PK ++ +Q DN Sbjct: 145 FTLDDYTQLTLRLRDKKHLEKQIYLMFNPVSKVNWVYKAFFVKT-PKNTVV-YQTTYKDN 202 Query: 194 NFLNDRYKESIKA-STPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKE 252 FL+D +E+I+ + + +Y+ G + + D +++ +D + + D+L +P Sbjct: 203 RFLDDVTRENIEELANRNEAYYKIYALGQFATLDKLIFPKYD--KQILNKDKLSHLP--- 257 Query: 253 YFAGVDWGYEHYGSIVLIGRGIDGN--FYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINF 310 F G+D+G+ + S +L + D N Y +EE+ + D KD+ Y Sbjct: 258 SFFGLDYGFINDPSALLHVKIDDANKKLYILEEYVRKNLTNDKIANAIKDL--GYAKEEI 315 Query: 311 YCDTARPEYITEFRRHRL-RAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFK 369 D+A + E R + R I+ K + ++ + L + + ++ + + +E+ Sbjct: 316 RGDSAEKKSNQELRNLGIPRMIDVTKGPGTVMQGIQYLLQYD--WIVDERCVKTIEELEN 373 Query: 370 YVWHP---TN---GEPIKEFDDVLDSLRYAI 394 Y W TN EP+ ++ +D++RYA+ Sbjct: 374 YTWKKDKKTNEYTNEPVDSYNHCIDAIRYAV 404 >gi|5208|lcl|protein:vir:106641 Length: 446 # NCBI annotation: ORF005 # Family: family:all:54 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239489;genbank:gi:66395220;genbank:GeneID :4555795 Length = 446 Score = 46.6 bits (109), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 118/258 (45%), Gaps = 27/258 (10%) Query: 155 RILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIK-ASTPSGMF 213 +I + NP +W+ K + E+ +P ++ Q DN FL++ +++++ + + + Sbjct: 182 QIFLMFNPVSKLNWVYKYFFEHGEPMENVMIRQSSYRDNKFLDEMTRQNLELLANRNPAY 241 Query: 214 YERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRG 273 Y+ G + + D +V+ ++ + I E+ +P YF G+D+GY + S I Sbjct: 242 YKIYALGEFATLDKLVFPKYE--KRIISDKEVGHLP--SYF-GLDFGYVNDPS-AFIHVK 295 Query: 274 IDGN---FYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRRHRL-R 329 ID + Y I E+ + ++ + D+ Y D+A + I E + + + R Sbjct: 296 IDNDNKKLYVISEYVKKGMLNNEIAQVINDL--GYSKEKITADSAEQKSIMEIKTNGIDR 353 Query: 330 AINADKSK---LSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTN------GEPI 380 + A K K ++G++ V++ +V+ + + +E Y W EP+ Sbjct: 354 IVPAMKGKDSVMAGIQFVSQF-----DIVIDERCYKTIEEFDNYTWKKDKNTGEYYNEPV 408 Query: 381 KEFDDVLDSLRYAIYTHT 398 ++ +D+LRYA+ T Sbjct: 409 DTYNHCIDALRYAVEVLT 426 >gi|6719|lcl|protein:vir:99411 Length: 447 # NCBI annotation: hypothetical protein # Family: family:all:32729 # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919076;genbank:gi:119757034;genbank:GeneI D:4606064 Length = 447 Score = 42.7 bits (99), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 15/196 (7%) Query: 215 ERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEY-FAGVDWGYEHYGSIVLIGRG 273 E+ ++G + + +G+VY F + AD++ D ++ G D G+ ++ I + Sbjct: 240 EQGLHGGFAAAEGLVYDAFTRQTHVRDADDVRDRLADDWAMYGYDAGWNDPRVLLDIRKT 299 Query: 274 IDGNFY----FIEEHAHQFKFIDDWVVIAKDI---VSRYGNINFYCDTARPEYITEFRRH 326 G F F + +H + +D + D+ ++ Y + P +I +FR+ Sbjct: 300 HAGQFVVWDQFYKSESHLAELVDPDDALPADVDPWLAGRPRGRVYAEH-EPAHIEQFRKA 358 Query: 327 RLRAINADKSKLSGVEEVAKLFKQN----KLLVLYDNMDRFKQEVFKYVWHPTNGEPIKE 382 A+ A+KS G++ V + +++ D QE Y + K Sbjct: 359 NWPAVKAEKSLDGGIDHVRSRLAMDDEGRPGVLVTDRCGELIQEFLSY--KEDHVGTSKA 416 Query: 383 FDDVLDSLRYAIYTHT 398 D LD+LRYA++THT Sbjct: 417 QDHALDALRYALFTHT 432 >gi|21526|lcl|protein:vir:104262 Length: 438 # NCBI annotation: terminase, large subunit # Family: family:all:147 # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006983;genbank:gi:46401884;genbank:GeneID :2777679 Length = 438 Score = 40.8 bits (94), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 11/158 (6%) Query: 252 EYFAGVDWGYEHYGSIVLIGRGIDGN-FYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINF 310 E G+D GY +++ I D + +Y +EE+ K + + RY Sbjct: 280 ETLLGIDVGYRDPTAVLTIKYHYDTDTYYVLEEYQQAEKTTAQHAAYIQHCIDRYKVDRI 339 Query: 311 YCDTARPEYITEFR-RHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFK 369 + D+A ++ + H + + A KS L G+ + LF+Q K++V + + Sbjct: 340 FVDSAAAQFRQDLAYEHEIASAPAKKSVLDGLACLQALFQQGKIIV-DASCSSLIHALQN 398 Query: 370 YVWHPTNGE-------PIKEFDD-VLDSLRYAIYTHTK 399 Y W GE P + + + D+LRY IY+ ++ Sbjct: 399 YKWDFQEGEEKLSREKPRHDANSHLCDALRYGIYSISR 436 >gi|6093|lcl|protein:vir:95761 Length: 432 # NCBI annotation: terminase large subunit # Family: family:all:54 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950582;genbank:gi:119953777;genbank:GeneI D:5076831 Length = 432 Score = 37.7 bits (86), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 65/306 (21%), Positives = 116/306 (37%), Gaps = 42/306 (13%) Query: 114 KVSGIGAIRGMTSF----GAYINEASLAHEEVFDEIKSRCSGTG--ARILVDTNPDHPEH 167 K++ I G+ S+ AY E E + + I+ +I V NP H Sbjct: 119 KITSITVDTGLLSWLWLEEAYQVENQDKFETLVESIRGSIDAPDFFKQITVTFNPWSERH 178 Query: 168 WLLKDYIENTDPKAGILSHQFKLDDNNFLN----DRYKESIKASTPSGMFYERNINGMWV 223 WL + + K + + N +L+ DRY++ + + NG W Sbjct: 179 WLKSAFFDEDTRKKDVFADTTTYRVNEWLDQQDIDRYEDLWRTNPRRAAVVA---NGDWG 235 Query: 224 SGDGVVYADFDLNE----NTIKADELDDIPIKEYFAGVDWGYEHYGSIVLIGRGID---G 276 +G+V+ ++++ + +TIK I E AG+D+G+ H +D Sbjct: 236 VAEGLVFENYEVKDFDIVSTIKR-------IGETTAGLDFGFTH-DPTTFPRLAVDLEKK 287 Query: 277 NFYFIEEHAHQFKFIDDWVVIAKDIV-SRYGNINFYCDTARPEYITEFRRHRLRAINADK 335 + EH DD I K IV + N D+A I E + +R + Sbjct: 288 ELWIYAEHYEHAMTTDD---IFKMIVDADMQNAVITADSAEQRLIAELQAKGIRRLVPSI 344 Query: 336 SKLSGVEEVAKLFKQNKLLV---LYDNMDRFKQEVFKYVWHPTNG----EPIKEFDDVLD 388 + KQ K+ + ++ F ++K +G EPI + ++D Sbjct: 345 KGKGSINAGIDFMKQFKIYIHPSCIKTIEEFDTYIYK---QDKDGKWLNEPIDSNNHIID 401 Query: 389 SLRYAI 394 ++RYA+ Sbjct: 402 AIRYAL 407 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 35.8 bits (81), Expect = 0.001, Method: Compositional matrix adjust. Identities = 66/302 (21%), Positives = 126/302 (41%), Gaps = 44/302 (14%) Query: 118 IGAIRGMTSFGAYINEASLAHEEVFDEIKSRCSGTGAR---ILVDTNPDHPEHWLLKDYI 174 I +I+G++ + EAS + + ++ R + I NP +W + + Sbjct: 122 IKSIKGLSD--VVMEEASEFNHNDYTQLTLRLREPKHKQRQIFCMFNPVSKLNWTYQTWF 179 Query: 175 ENTDPKAG-----ILSHQFKLDDNNFL---NDRYKESIKASTPSGMFYERNINGMWVSGD 226 DP A + HQ DN FL N R E +K + P+ +Y+ G + + D Sbjct: 180 ---DPSADYDRSRVAIHQSTYKDNRFLDEDNIRTIEELKNTNPA--YYKIYTLGEFATLD 234 Query: 227 GVVYADFDLNENTIKADELDDIPIKEYFAGVDWGY----EHYGSIVLIGRGIDGNFYFIE 282 +V+ F+ + +L + + +YF G+D+G+ + I L R + Y ++ Sbjct: 235 KLVFPYFETKRLNPRDPKL--LALNDYF-GLDYGFINDPSAFMHIKLDMR--NKTLYVMD 289 Query: 283 EHAHQFKFIDDWVVIAKDIVSRYGNINFYCDTARPEYITEFRR---HRLR-AINADKSKL 338 E + + + KD+ Y D+A + I E +R +R+R A+ S + Sbjct: 290 EFVKKGLLNNQLAQVIKDM--GYSKEVITADSAEKKSIAEMKRDGIYRIRPALKGPDSII 347 Query: 339 SGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVW------HPTNGEPIKEFDDVLDSLRY 392 G++ F Q V+ D + +E+ Y + PI ++ +D++RY Sbjct: 348 QGIQ-----FLQQFKWVVDDRCVKTIEELQNYTYVKDKKTDEYTNRPIDAYNHCIDAIRY 402 Query: 393 AI 394 A+ Sbjct: 403 AV 404 >gi|18891|lcl|protein:vir:8847 Length: 482 # NCBI annotation: terminase # Family: family:all:1730 # MgeID: mge:158 # MgeName: PaP3 # Cross-refs: genbank:acc:NP_775255;genbank:gi:27476053;genbank:GeneID :2700601 Length = 482 Score = 34.7 bits (78), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/146 (20%), Positives = 67/146 (45%), Gaps = 12/146 (8%) Query: 139 EEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLND 198 ++++ + +R + TG + + P+H ++KD++++ P ++ + +D L+ Sbjct: 180 KDIYTQCVTRTATTGGIVYLTFTPEHGLTEIVKDFLQDLKPGQFLIHASW--EDAPHLSP 237 Query: 199 RYKESIKASTPSGMFYERNINGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYF---A 255 KE + S S G+ + G GVV F + E + D I ++F Sbjct: 238 EVKEQL-LSVYSPAERRMRAEGIPMLGSGVV---FPILEEKFVCEPFD---IPDHFHRII 290 Query: 256 GVDWGYEHYGSIVLIGRGIDGNFYFI 281 G+D G++H +I + + + Y++ Sbjct: 291 GIDLGFDHPNAIACVAWDAEKDKYYL 316 >gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: phage terminase large subunit # Family: family:all:1730 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516188;genbank:gi:89885991;genbank:GeneID :3964379 Length = 475 Score = 33.1 bits (74), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/276 (19%), Positives = 117/276 (42%), Gaps = 40/276 (14%) Query: 138 HEEVFDEIKSRCSGTGARILVDTNPDHPEHWLLKDYIENTDPKAGILSHQFKLDDNNFLN 197 + +V + G G R ++ P++ L+ +++N P ++ DD L+ Sbjct: 190 YPQVLTRTATGDRGKGGRGILTFTPENGRTDLVIGFMDNPSPAQTCIN--VGWDDAPHLS 247 Query: 198 DRYKESIKASTPSGMFYERNI--NGMWVSGDGVVYADFDLNENTIKADELDDIPIKEYFA 255 + K + AS P+ ++R++ G+ + G G +Y DL E+ I D P+ ++ Sbjct: 248 QKVKNDLLASFPA---HQRDMRTKGIPMLGHGRIY---DLGEDFITCDPF---PVPAHWL 298 Query: 256 ---GVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNINFYC 312 G+D+G++H + + + + +++ A++ + + Y ++ + Sbjct: 299 VIDGMDFGWDHPQAHIQLVWDNENEMFYVTR-AYKARQVSP--------AEAYSAVSIWA 349 Query: 313 D---TARPE--YITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEV 367 + TA P +TE + D + + + A+ ++ + L+D M R K +V Sbjct: 350 ENVPTAWPSDGLMTEKGSGIQQKTYYDDAGFCMLRDPAQWPDGSRSVELHDLMRRGKFKV 409 Query: 368 FK----------YVWHPTNGEPIKEFDDVLDSLRYA 393 F + +K DD+LD++RYA Sbjct: 410 FSGLRDFFDEYNFYHRDEKSRIVKMRDDILDAVRYA 445 >gi|360|lcl|protein:vir:344 Length: 482 # NCBI annotation: terminase # Family: family:all:147 # MgeID: mge:9 # MgeName: Mx8 # Cross-refs: genbank:acc:NP_203458;genbank:gi:15320614;genbank:GeneID :921717 Length = 482 Score = 30.4 bits (67), Expect = 0.037, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%) Query: 128 GAYINEASLAHEEVFDEIKSRCS---------GTGARILVDTNPDHPEHWLLK 171 GAY+NEA + + D + SR T + +DTNP H HW K Sbjct: 133 GAYVNEARQVPKAILDVLCSRVGRYPSKAQGGATWFGVWMDTNPWHTGHWGYK 185 >gi|8380|lcl|protein:vir:96782 Length: 408 # NCBI annotation: putative terminase large subunit # Family: family:all:54 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224236;genbank:gi:62362371;genbank:GeneID :3345721 Length = 408 Score = 29.3 bits (64), Expect = 0.080, Method: Compositional matrix adjust. Identities = 32/162 (19%), Positives = 71/162 (43%), Gaps = 18/162 (11%) Query: 254 FAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNIN---F 310 + G+D+G+ + ++GN +IE+ A + D A ++ R I+ Sbjct: 244 YYGLDFGFSQ-DPTAGVKCWLNGNDVYIEKEAGKVGLEID--HTADYLIKRIDGIDDAKV 300 Query: 311 YCDTARPEYITEFRRHRLRAINADKSKLSGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKY 370 Y D+ARPE I+ +R + I VE+ + + ++ + + + K+ F Y Sbjct: 301 YADSARPESISLLKRTGIPRIEGVPKWKGSVEDGVEWLRSKRIFIDPECTETIKE--FTY 358 Query: 371 VWHPTN-------GEPIKEFDDVLDSLRYA---IYTHTKPER 402 + T+ + + ++ +D++RY + T++ P + Sbjct: 359 YSYKTDRYTGEIKNQLVDAYNHYIDAIRYCFNDMITYSPPPK 400 >gi|155|lcl|protein:vir:77595 Length: 499 # NCBI annotation: terminase large subunit # Family: family:all:1730 # MgeID: mge:46 # MgeName: P22 # Cross-refs: genbank:acc:YP_063734;genbank:gi:51236724;genbank:GeneID :2944239 Length = 499 Score = 28.1 bits (61), Expect = 0.21, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Query: 339 SGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYA 393 SG+ E+ L + + V ++ + F +E F+ NG+ +K DDVLD+ RY Sbjct: 415 SGISELRDLMLEGRFKV-FNTCEPFFEE-FRLYHRDENGKIVKTNDDVLDATRYG 467 >gi|13374|lcl|protein:vir:9262 Length: 517 # NCBI annotation: gp2 # Family: family:all:1730 # MgeID: mge:164 # MgeName: ST64T # Cross-refs: genbank:acc:NP_720326;genbank:gi:24371583;genbank:GeneID :955800 Length = 517 Score = 27.3 bits (59), Expect = 0.36, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%) Query: 339 SGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYA 393 SG+ E+ L + + V ++ + F +E F+ NG+ +K DDVLD+ RY Sbjct: 433 SGIGELRDLMLEGRFKV-FNTCEPFFEE-FRLYHRDENGKIVKTNDDVLDATRYG 485 >gi|3300|lcl|protein:vir:100942 Length: 499 # NCBI annotation: Gp2 # Family: family:all:1730 # MgeID: mge:1509 # MgeName: ST104 # Cross-refs: genbank:acc:YP_006405;genbank:gi:46358697;genbank:GeneID :2777092 Length = 499 Score = 26.6 bits (57), Expect = 0.62, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 339 SGVEEVAKLFKQNKLLVLYDNMDRFKQEVFKYVWHPTNGEPIKEFDDVLDSLRYA 393 SG+ E+ L + + ++ + F +E F+ NG+ +K DDVLD+ RY Sbjct: 415 SGISELRDLMLEGRFKA-FNTCEPFFEE-FRLYHRDENGKIVKTNDDVLDATRYG 467 >gi|3478|lcl|protein:vir:101370 Length: 494 # NCBI annotation: PacB # Family: family:all:144 # MgeID: mge:1512 # MgeName: P1 # Cross-refs: genbank:acc:YP_006576;genbank:gi:46401730;genbank:GeneID :2777432 Length = 494 Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 131 INEASLAHEEVFDEIKSRCSGTGARILVDTNPDHP 165 I+EAS ++ F I +G RIL+ + P P Sbjct: 161 IDEASGVSDKAFSVITGALTGKDNRILLLSQPTRP 195 >gi|2602|lcl|protein:vir:94128 Length: 185 # NCBI annotation: ORF020 # Family: family:all:913 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240241;genbank:gi:66395905;genbank:GeneID :5133297 Length = 185 Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%) Query: 177 TDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSG-----MFYERN 217 TD +S FKL N D+ E++K + +G YERN Sbjct: 48 TDYSPNAMSESFKLTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERN 93 >gi|3534|lcl|protein:vir:105912 Length: 185 # NCBI annotation: major tail protein # Family: family:all:913 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004381;genbank:gi:122891836;genbank:Ge neID:4712383 Length = 185 Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%) Query: 177 TDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSG-----MFYERN 217 TD +S FKL N D+ E++K + +G YERN Sbjct: 48 TDYSPNAMSESFKLTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERN 93 >gi|7580|lcl|protein:vir:96311 Length: 185 # NCBI annotation: ORF021 # Family: family:all:913 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240318;genbank:gi:66395985;genbank:GeneID :5133388 Length = 185 Score = 23.9 bits (50), Expect = 3.4, Method: Compositional matrix adjust. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%) Query: 177 TDPKAGILSHQFKLDDNNFLNDRYKESIKASTPSG-----MFYERN 217 TD +S FKL N D+ E++K + +G YERN Sbjct: 48 TDYSPNAMSESFKLTIGNVPGDKGIEAVKHAVQTGGQLRIWLYERN 93 >gi|18781|lcl|protein:vir:7429 Length: 581 # NCBI annotation: gp6 # Family: family:all:147 # MgeID: mge:147 # MgeName: Barnyard # Cross-refs: genbank:acc:NP_818544;genbank:gi:29566981;genbank:GeneID :1260231 Length = 581 Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%) Query: 252 EYFAGVDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQFKFIDDWVVIAKDIVSRYGNIN-- 309 E A VD+GY + +LI G G ++E +Q A +I+ R + Sbjct: 341 ETIAAVDYGYRNPNVWLLIQIGPWGEINIVDE-LYQADLTP--TEFANEILRRGLCPDTL 397 Query: 310 --FYCDTARPEYI----TEFRRHRLRA 330 FY D A PE T FR+H RA Sbjct: 398 HSFYADPAAPEASRTLETIFRQHGKRA 424 >gi|8730|lcl|protein:vir:96840 Length: 421 # NCBI annotation: ORF009 # Family: family:all:54 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240151;genbank:gi:66395816;genbank:GeneID :5133181 Length = 421 Score = 23.9 bits (50), Expect = 3.7, Method: Compositional matrix adjust. Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 305 YGNINFYCDTARPEYITEFRR-HRLRAINADKSKLSGVE 342 Y + + Y D+A P+ I E R+ H ++ I K VE Sbjct: 312 YQSDDIYADSAEPKSIDELRKEHGIKRIKGVKKGPDSVE 350 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 23.5 bits (49), Expect = 4.7, Method: Compositional matrix adjust. Identities = 8/16 (50%), Positives = 11/16 (68%) Query: 165 PEHWLLKDYIENTDPK 180 P+ W+ +D I TDPK Sbjct: 391 PKFWVPEDTIHTTDPK 406 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust. Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Query: 126 SFGAYINEASLAHEEVFDEIKSRCSGTGARILVDTNPDHPEHW 168 +F N+A LA + V SG ++IL+ T P+ HW Sbjct: 248 AFIPNFNDAWLAIQPVIS------SGRHSKILMTTTPNGLNHW 284 >gi|19603|lcl|protein:vir:4076 Length: 205 # NCBI annotation: major tail shaft protein # Family: family:all:11746 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043555;genbank:gi:9628689;genbank:GeneID: 1261181 Length = 205 Score = 23.1 bits (48), Expect = 5.6, Method: Compositional matrix adjust. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 169 LLKDYIENTDPKAGILSHQFKLDDNNFLNDRYKESIKASTPS 210 L D + N P + +++ DD + S++A+TPS Sbjct: 91 FLADDVANYKPYGFAYAERYRDDDGTGYKATFYPSVQATTPS 132 >gi|15109|lcl|protein:vir:3875 Length: 202 # NCBI annotation: major tail protein # Family: family:all:102 # ACLAME annotation(s): phi:0000082 - phage major tail protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680492;swissprot:trembl:p94216;genbank:gi :22296532;interpro:IPR006490;uniprot:P94216;genbank:Gene ID:951722 Length = 202 Score = 23.1 bits (48), Expect = 6.9, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%) Query: 200 YKESIKASTPSGMFYERNING--MWVSGDGVVYADFDLNENTIKADELDDIPIKEYFAG- 256 Y +++ + + +F + NG +WV G++ F L K + P + G Sbjct: 100 YPKNLSPNYAATLFRTKLSNGKYVWV---GMLKGMFSLPGVDTKTVDGTPDPSADSIEGS 156 Query: 257 -VDWGYEHYGSIVLIGRGIDGNFYFIEEHAHQF-KFIDDWVVIAK 299 + G + G++VLIGR + F F + H + F K +D + K Sbjct: 157 FIPRGDQDTGNVVLIGREDNDGFDFDKFHGYVFPKTAEDATIAPK 201 >gi|5868|lcl|protein:vir:95431 Length: 535 # NCBI annotation: hypothetical protein ORF049 # Family: family:all:543 # MgeID: mge:1570 # MgeName: PA11 # Cross-refs: genbank:acc:YP_001294642;genbank:gi:149408208;genbank:Ge neID:5236998 Length = 535 Score = 22.7 bits (47), Expect = 8.6, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 5/34 (14%) Query: 254 FAGVDWGYE-----HYGSIVLIGRGIDGNFYFIE 282 +A VD+ + Y +IV+IG D N Y ++ Sbjct: 351 YAAVDFAFSLSRQADYTAIVVIGIDCDNNIYVVD 384 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.320 0.139 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 198,712 Number of Sequences: 514 Number of extensions: 10125 Number of successful extensions: 120 Number of sequences better than 100.0: 52 Number of HSP's better than 100.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 35 Number of HSP's gapped (non-prelim): 57 length of query: 407 length of database: 206,069 effective HSP length: 74 effective length of query: 333 effective length of database: 168,033 effective search space: 55954989 effective search space used: 55954989 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)