Query lcl|Aclame:protein:vir:96980|NCBI_annot:ORF008|genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Match_columns 409 No_of_seqs 123 out of 1064 Neff 9.8 Searched_HMMs 1612 Date Sun Dec 1 07:24:48 2013 Command /home/guerois/workspace/virfam/python/lib/hhsearch//hhsearch2 -i .//seq/seq_77 -d /home/guerois/workspace/virfam/python/profile_database/capsid_neck_tail.hhm -glob -cpu 7 -o .//seq/HHR/seq_77_vs_rec_db.hhr No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 protein:vir:96980 Length: 409 100.0 6E-109 4E-112 613.7 45.4 409 1-409 1-409 (409) 2 protein:vir:94426 Length: 409 100.0 3E-108 2E-111 610.0 45.3 409 1-409 1-409 (409) 3 protein:vir:93943 Length: 409 100.0 4E-108 3E-111 609.2 45.3 409 1-409 1-409 (409) 4 protein:vir:2683 Length: 412 # 100.0 2E-106 1E-109 600.4 45.3 409 1-409 1-412 (412) 5 protein:vir:1380 Length: 422 # 100.0 2E-96 1.2E-99 545.3 43.1 405 1-407 1-422 (422) 6 protein:vir:102080 Length: 429 100.0 7.8E-96 4.8E-99 542.0 42.6 406 1-409 1-422 (429) 7 protein:vir:1266 Length: 416 # 100.0 3.2E-95 2E-98 538.6 42.3 404 1-409 1-416 (416) 8 protein:vir:102855 Length: 432 100.0 8.4E-95 5.2E-98 536.3 42.4 406 1-409 1-425 (432) 9 protein:vir:105002 Length: 432 100.0 8.4E-95 5.2E-98 536.3 42.4 406 1-409 1-425 (432) 10 protein:vir:107605 Length: 432 100.0 8.4E-95 5.2E-98 536.3 42.4 406 1-409 1-425 (432) 11 protein:vir:102118 Length: 409 100.0 7.9E-94 4.9E-97 531.0 41.7 395 1-404 1-409 (409) 12 protein:vir:100150 Length: 437 100.0 2.3E-93 1.4E-96 528.4 44.1 404 1-409 1-431 (437) 13 protein:vir:81152 Length: 411 100.0 1.3E-93 8E-97 529.8 41.9 395 1-404 1-411 (411) 14 protein:vir:4509 Length: 424 # 100.0 8E-93 5E-96 525.5 42.2 397 1-408 17-424 (424) 15 protein:vir:483 Length: 413 # 100.0 2.6E-92 1.6E-95 522.7 41.9 399 1-409 1-411 (413) 16 protein:vir:9359 Length: 348 # 100.0 1.7E-92 1.1E-95 523.7 40.8 348 62-409 1-348 (348) 17 protein:vir:1884 Length: 424 # 100.0 6.2E-92 3.8E-95 520.6 43.4 398 1-407 8-424 (424) 18 protein:vir:100249 Length: 431 100.0 3.2E-92 2E-95 522.2 40.9 395 1-399 1-431 (431) 19 protein:vir:4454 Length: 414 # 100.0 8.9E-92 5.5E-95 519.8 42.6 399 1-409 1-412 (414) 20 protein:vir:105064 Length: 421 100.0 5.7E-92 3.5E-95 520.8 41.2 399 1-409 1-416 (421) 21 protein:vir:189 Length: 424 # 100.0 2.1E-91 1.3E-94 517.7 43.1 398 1-407 8-424 (424) 22 protein:vir:93610 Length: 454 100.0 3E-91 1.9E-94 516.9 42.4 403 3-409 1-432 (454) 23 protein:vir:5737 Length: 419 # 100.0 3.3E-91 2E-94 516.7 41.9 399 1-409 1-414 (419) 24 protein:vir:4337 Length: 434 # 100.0 3.2E-91 2E-94 516.7 41.5 404 1-408 1-434 (434) 25 protein:vir:98396 Length: 441 100.0 3.7E-91 2.3E-94 516.4 41.3 395 1-406 23-441 (441) 26 protein:vir:79984 Length: 441 100.0 3.9E-91 2.4E-94 516.3 41.4 399 1-406 23-441 (441) 27 protein:vir:9408 Length: 441 # 100.0 3.9E-91 2.4E-94 516.3 41.4 399 1-406 23-441 (441) 28 protein:vir:81072 Length: 432 100.0 1.3E-90 8.1E-94 513.4 43.0 401 1-409 7-428 (432) 29 protein:vir:8418 Length: 409 # 100.0 2E-90 1.2E-93 512.3 43.5 397 1-409 1-407 (409) 30 protein:vir:10362 Length: 432 100.0 2.2E-90 1.4E-93 512.1 43.0 401 1-409 7-428 (432) 31 protein:vir:97060 Length: 432 100.0 2.6E-90 1.6E-93 511.8 42.8 401 1-409 7-428 (432) 32 protein:vir:1431 Length: 419 # 100.0 3.3E-90 2E-93 511.2 41.1 397 1-409 1-412 (419) 33 protein:vir:80333 Length: 419 100.0 5.4E-89 3.3E-92 504.5 39.7 394 1-409 1-409 (419) 34 protein:vir:4598 Length: 416 # 100.0 1.4E-88 8.6E-92 502.2 41.7 396 1-406 1-416 (416) 35 protein:vir:81095 Length: 416 100.0 1.4E-88 8.6E-92 502.2 41.7 396 1-406 1-416 (416) 36 protein:vir:7853 Length: 518 # 100.0 3.8E-88 2.4E-91 499.9 43.2 401 1-409 1-436 (518) 37 protein:vir:6240 Length: 457 # 100.0 3E-88 1.9E-91 500.4 42.3 406 1-409 1-451 (457) 38 protein:vir:101648 Length: 518 100.0 8.6E-88 5.3E-91 497.9 43.5 401 1-409 1-436 (518) 39 protein:vir:1326 Length: 457 # 100.0 7.2E-88 4.5E-91 498.3 41.8 406 1-409 1-448 (457) 40 protein:vir:3868 Length: 417 # 100.0 3.2E-87 2E-90 494.8 42.5 393 1-409 1-407 (417) 41 protein:vir:9702 Length: 406 # 100.0 4.4E-87 2.7E-90 494.0 41.9 391 1-409 1-404 (406) 42 protein:vir:81218 Length: 423 100.0 3.1E-86 1.9E-89 489.4 41.6 396 1-409 1-423 (423) 43 protein:vir:101647 Length: 460 100.0 1.9E-84 1.2E-87 479.6 41.5 399 3-408 1-460 (460) 44 protein:vir:102727 Length: 945 100.0 2.8E-83 1.7E-86 473.2 41.9 405 1-409 71-531 (945) 45 protein:vir:95378 Length: 406 100.0 3.8E-83 2.4E-86 472.4 41.0 389 1-409 1-403 (406) 46 protein:vir:80134 Length: 403 100.0 3.6E-83 2.2E-86 472.6 40.2 385 1-409 1-400 (403) 47 protein:vir:94666 Length: 723 100.0 7.8E-83 4.8E-86 470.7 41.5 386 19-409 1-427 (723) 48 protein:vir:8317 Length: 409 # 100.0 9.5E-83 5.9E-86 470.2 39.2 371 1-387 1-409 (409) 49 protein:vir:960 Length: 413 # 100.0 9.6E-81 6E-84 459.3 39.7 384 1-404 13-413 (413) 50 protein:vir:8100 Length: 466 # 100.0 4.8E-80 3E-83 455.4 40.4 397 1-407 1-466 (466) 51 protein:vir:4089 Length: 395 # 100.0 8.7E-80 5.4E-83 454.0 39.5 383 1-409 1-393 (395) 52 protein:vir:95965 Length: 385 100.0 8.9E-80 5.5E-83 454.0 37.4 370 1-407 1-385 (385) 53 protein:vir:3843 Length: 397 # 100.0 2.5E-79 1.5E-82 451.5 39.6 382 1-409 1-389 (397) 54 protein:vir:4854 Length: 386 # 100.0 6.5E-79 4E-82 449.2 39.4 380 1-408 1-386 (386) 55 protein:vir:6210 Length: 394 # 100.0 5.4E-79 3.3E-82 449.7 38.0 381 1-407 1-394 (394) 56 protein:vir:104259 Length: 403 100.0 8.4E-78 5.2E-81 443.1 40.3 380 1-409 1-402 (403) 57 protein:vir:9507 Length: 395 # 100.0 9.9E-78 6.1E-81 442.8 39.4 378 1-409 1-395 (395) 58 protein:vir:101289 Length: 395 100.0 9.9E-78 6.1E-81 442.8 39.4 378 1-409 1-395 (395) 59 protein:vir:100650 Length: 395 100.0 9.9E-78 6.1E-81 442.8 39.4 378 1-409 1-395 (395) 60 protein:vir:100187 Length: 385 100.0 4.5E-76 2.8E-79 433.6 39.6 373 1-407 1-385 (385) 61 protein:vir:78310 Length: 376 100.0 1.4E-76 8.4E-80 436.5 35.7 365 1-405 1-376 (376) 62 protein:vir:7407 Length: 392 # 100.0 9.3E-76 5.8E-79 431.9 38.6 380 1-409 3-392 (392) 63 protein:vir:9641 Length: 395 # 100.0 1.7E-75 1E-78 430.5 35.9 375 1-409 1-394 (395) 64 protein:vir:100882 Length: 383 100.0 9.5E-75 5.9E-78 426.4 39.6 373 1-405 1-383 (383) 65 protein:vir:4952 Length: 386 # 100.0 6.4E-75 4E-78 427.3 38.6 379 1-408 1-386 (386) 66 protein:vir:98643 Length: 395 100.0 4.7E-75 2.9E-78 428.1 36.9 375 1-409 1-394 (395) 67 protein:vir:3989 Length: 392 # 100.0 1.7E-74 1E-77 425.0 38.8 377 1-409 3-392 (392) 68 protein:vir:1023 Length: 392 # 100.0 1.7E-74 1E-77 425.0 38.8 377 1-409 3-392 (392) 69 protein:vir:4828 Length: 382 # 100.0 2E-74 1.2E-77 424.7 38.3 377 1-408 1-382 (382) 70 protein:vir:93867 Length: 378 100.0 8.6E-75 5.4E-78 426.6 36.3 353 1-409 1-376 (378) 71 protein:vir:80796 Length: 574 100.0 4.5E-74 2.8E-77 422.7 39.2 404 1-409 27-519 (574) 72 protein:vir:94002 Length: 378 100.0 1.4E-74 8.5E-78 425.5 35.5 351 1-407 1-378 (378) 73 protein:vir:1661 Length: 378 # 100.0 2.8E-74 1.7E-77 423.9 36.6 351 1-407 1-378 (378) 74 protein:vir:80644 Length: 551 100.0 1.7E-73 1.1E-76 419.5 40.9 403 1-409 5-518 (551) 75 protein:vir:4995 Length: 384 # 100.0 2.7E-74 1.7E-77 423.9 34.4 370 1-381 1-384 (384) 76 protein:vir:1082 Length: 359 # 100.0 1.1E-72 7E-76 415.0 36.7 348 1-375 1-359 (359) 77 protein:vir:858 Length: 378 # 100.0 1E-72 6.3E-76 415.3 35.7 352 1-409 1-375 (378) 78 protein:vir:100691 Length: 535 100.0 1.1E-71 7.1E-75 409.5 39.8 404 1-409 34-517 (535) 79 protein:vir:94869 Length: 378 100.0 2.5E-72 1.5E-75 413.1 36.1 351 1-407 1-378 (378) 80 protein:vir:63755 Length: 547 100.0 3.1E-71 1.9E-74 407.1 40.7 403 1-409 1-514 (547) 81 protein:vir:96579 Length: 576 100.0 3.1E-71 1.9E-74 407.1 39.5 402 1-409 27-518 (576) 82 protein:vir:3153 Length: 467 # 100.0 1.6E-70 9.9E-74 403.2 38.8 365 41-409 1-445 (467) 83 protein:vir:95599 Length: 563 100.0 4E-70 2.5E-73 401.0 39.5 401 1-409 31-527 (563) 84 protein:vir:99312 Length: 563 100.0 4E-70 2.5E-73 401.0 39.5 401 1-409 31-527 (563) 85 protein:vir:4194 Length: 540 # 100.0 4.8E-69 3E-72 395.1 38.5 389 1-409 6-439 (540) 86 protein:vir:4156 Length: 542 # 100.0 8.3E-69 5.1E-72 393.8 38.4 396 1-409 1-456 (542) 87 protein:vir:78641 Length: 278 100.0 5.1E-68 3.2E-71 389.5 33.7 278 62-339 1-278 (278) 88 protein:vir:99452 Length: 651 100.0 2E-67 1.2E-70 386.3 34.3 401 1-409 1-528 (651) 89 protein:vir:79772 Length: 648 100.0 4.7E-65 2.9E-68 373.2 39.0 398 1-409 43-498 (648) 90 protein:vir:79150 Length: 368 100.0 2.6E-52 1.6E-55 303.4 27.1 336 1-355 1-368 (368) 91 protein:vir:267 Length: 348 # 100.0 2.8E-50 1.7E-53 292.2 29.0 321 1-347 1-348 (348) 92 protein:vir:103971 Length: 376 100.0 9.7E-50 6E-53 289.3 31.6 313 1-346 26-376 (376) 93 protein:vir:79207 Length: 351 100.0 7.3E-50 4.5E-53 290.0 29.5 313 1-346 1-351 (351) 94 protein:vir:100328 Length: 346 100.0 8.3E-50 5.1E-53 289.7 29.3 325 1-344 1-346 (346) 95 protein:vir:78191 Length: 351 100.0 1.4E-49 8.7E-53 288.4 29.4 313 1-346 1-351 (351) 96 protein:vir:78749 Length: 337 100.0 6E-49 3.7E-52 285.0 27.8 315 1-340 1-337 (337) 97 protein:vir:6058 Length: 344 # 100.0 2.1E-48 1.3E-51 282.0 30.3 322 1-344 1-344 (344) 98 protein:vir:3743 Length: 345 # 100.0 5.7E-48 3.5E-51 279.6 32.2 322 1-341 1-345 (345) 99 protein:vir:98567 Length: 340 100.0 2.7E-48 1.7E-51 281.4 29.9 318 1-343 1-340 (340) 100 protein:vir:3780 Length: 345 # 100.0 7E-48 4.3E-51 279.1 31.2 324 1-341 1-345 (345) 101 protein:vir:1150 Length: 350 # 100.0 1.1E-48 6.7E-52 283.5 26.5 322 1-339 1-350 (350) 102 protein:vir:5691 Length: 344 # 100.0 4.6E-48 2.8E-51 280.1 29.3 322 1-344 1-344 (344) 103 protein:vir:2013 Length: 344 # 100.0 6.3E-48 3.9E-51 279.3 30.0 320 1-344 1-344 (344) 104 protein:vir:4698 Length: 251 # 100.0 5.7E-46 3.5E-49 268.6 24.9 241 1-248 1-251 (251) 105 protein:vir:98853 Length: 219 100.0 2.2E-39 1.4E-42 232.5 22.2 203 134-343 1-219 (219) 106 protein:vir:5249 Length: 437 # 99.9 1.5E-26 9.1E-30 162.2 32.7 391 1-409 1-434 (437) 107 protein:vir:107742 Length: 537 99.9 4.3E-24 2.7E-27 148.7 30.8 393 1-409 48-531 (537) 108 protein:vir:94049 Length: 532 99.9 1.5E-23 9.3E-27 145.7 30.6 396 1-409 23-514 (532) 109 protein:vir:99563 Length: 862 99.9 7.1E-23 4.4E-26 142.0 29.3 391 1-409 98-581 (862) 110 protein:vir:79647 Length: 435 99.9 3.9E-22 2.4E-25 138.0 28.7 383 1-405 1-435 (435) 111 protein:vir:96068 Length: 765 99.9 6.9E-22 4.3E-25 136.6 27.6 392 1-409 37-525 (765) 112 protein:vir:108215 Length: 469 99.9 2E-20 1.2E-23 128.6 34.6 404 1-409 4-458 (469) 113 protein:vir:80040 Length: 461 99.8 1.1E-21 6.5E-25 135.6 26.6 396 1-409 1-461 (461) 114 protein:vir:104338 Length: 422 99.8 1.1E-20 6.9E-24 130.0 31.0 382 1-408 1-422 (422) 115 protein:vir:103860 Length: 528 99.8 1.3E-19 8E-23 124.1 34.2 400 1-409 1-450 (528) 116 protein:vir:107662 Length: 427 99.8 1.2E-20 7.3E-24 129.9 27.1 376 1-409 1-427 (427) 117 protein:vir:99232 Length: 526 99.8 2.4E-19 1.5E-22 122.6 33.5 402 1-409 1-448 (526) 118 protein:vir:79233 Length: 526 99.8 3.5E-19 2.2E-22 121.8 34.2 399 1-409 1-448 (526) 119 protein:vir:1986 Length: 512 # 99.8 1.8E-18 1.1E-21 117.8 33.7 396 1-409 1-439 (512) 120 protein:vir:99853 Length: 488 99.8 9.4E-19 5.9E-22 119.4 32.0 387 1-409 1-410 (488) 121 protein:vir:79063 Length: 491 99.8 5.5E-18 3.4E-21 115.2 33.2 391 1-409 1-422 (491) 122 protein:vir:79538 Length: 502 99.8 7.1E-19 4.4E-22 120.1 27.3 406 1-408 1-502 (502) 123 protein:vir:107880 Length: 491 99.8 5.9E-18 3.6E-21 115.1 31.5 388 1-409 1-419 (491) 124 protein:vir:389 Length: 530 # 99.7 7.9E-18 4.9E-21 114.3 26.5 405 1-409 1-526 (530) 125 protein:vir:3420 Length: 533 # 99.7 1.3E-17 8.1E-21 113.2 26.0 405 1-409 10-532 (533) 126 protein:vir:79511 Length: 448 99.7 3.4E-16 2.1E-19 105.4 31.6 393 1-409 1-439 (448) 127 protein:vir:95254 Length: 488 99.7 4.3E-16 2.7E-19 104.8 30.0 402 1-409 1-480 (488) 128 protein:vir:98816 Length: 446 99.7 1.8E-16 1.1E-19 106.9 26.7 366 1-378 3-446 (446) 129 protein:vir:77981 Length: 448 99.7 8.8E-16 5.5E-19 103.1 30.4 391 1-409 1-439 (448) 130 protein:vir:96738 Length: 505 99.7 1.2E-16 7.7E-20 107.8 25.2 406 1-409 1-505 (505) 131 protein:vir:95542 Length: 548 99.7 1.8E-16 1.1E-19 106.9 24.5 403 1-409 1-517 (548) 132 protein:vir:10321 Length: 495 99.6 2.8E-16 1.7E-19 105.9 23.7 401 1-408 3-495 (495) 133 protein:vir:6382 Length: 553 # 99.6 4.5E-16 2.8E-19 104.7 21.8 407 1-409 1-552 (553) 134 protein:vir:78161 Length: 355 99.6 2E-14 1.2E-17 95.7 26.5 296 112-409 1-328 (355) 135 protein:vir:78589 Length: 695 99.5 3.6E-14 2.2E-17 94.3 25.8 395 1-409 63-549 (695) 136 protein:vir:101541 Length: 694 99.5 4.2E-14 2.6E-17 93.9 25.6 395 1-409 62-544 (694) 137 protein:vir:3648 Length: 695 # 99.5 5.5E-14 3.4E-17 93.3 25.3 395 1-409 63-545 (695) 138 protein:vir:106716 Length: 698 99.5 1.4E-13 8.6E-17 91.1 24.6 395 1-409 63-546 (698) 139 protein:vir:105782 Length: 449 99.4 1.9E-13 1.2E-16 90.4 24.1 376 1-409 1-447 (449) 140 protein:vir:106027 Length: 629 99.1 8.3E-11 5.1E-14 75.9 20.5 401 1-409 1-504 (629) 141 protein:vir:106491 Length: 646 99.1 1.8E-10 1.1E-13 74.0 21.8 395 1-409 1-486 (646) 142 protein:vir:102426 Length: 631 99.0 1.4E-10 8.8E-14 74.6 17.9 401 1-409 1-509 (631) 143 protein:vir:98444 Length: 434 99.0 4.9E-09 3E-12 66.1 25.3 362 18-409 1-434 (434) 144 protein:vir:99916 Length: 504 99.0 2E-09 1.3E-12 68.2 23.1 396 1-409 18-504 (504) 145 protein:vir:5961 Length: 503 # 98.9 1.5E-08 9.3E-12 63.5 28.8 382 1-409 33-500 (503) 146 protein:vir:97900 Length: 639 98.9 6.1E-10 3.8E-13 71.1 18.0 402 1-409 1-513 (639) 147 protein:vir:107517 Length: 639 98.9 6.1E-10 3.8E-13 71.1 18.0 402 1-409 1-513 (639) 148 protein:vir:38 Length: 496 # N 98.9 4.9E-09 3.1E-12 66.1 22.9 389 2-408 1-496 (496) 149 protein:vir:2427 Length: 485 # 98.8 5.8E-09 3.6E-12 65.7 22.0 389 1-409 16-484 (485) 150 protein:vir:8654 Length: 629 # 98.8 5.3E-10 3.3E-13 71.4 16.2 400 1-409 1-507 (629) 151 protein:vir:99088 Length: 629 98.8 8.4E-10 5.2E-13 70.4 16.7 399 1-409 1-507 (629) 152 protein:vir:80959 Length: 499 98.8 1.9E-08 1.1E-11 63.0 24.0 392 2-408 1-499 (499) 153 protein:vir:104082 Length: 485 98.8 7.5E-09 4.7E-12 65.1 21.3 389 1-409 16-484 (485) 154 protein:vir:78907 Length: 518 98.8 2E-08 1.3E-11 62.8 22.2 390 1-402 1-518 (518) 155 protein:vir:5839 Length: 533 # 98.7 6E-08 3.7E-11 60.2 24.5 400 1-409 1-521 (533) 156 protein:vir:94742 Length: 409 98.7 7.9E-08 4.9E-11 59.5 26.3 347 1-375 4-409 (409) 157 protein:vir:7768 Length: 484 # 98.7 7.6E-08 4.7E-11 59.6 23.8 387 1-409 15-481 (484) 158 protein:vir:4223 Length: 486 # 98.7 9.2E-08 5.7E-11 59.2 23.9 387 1-409 16-486 (486) 159 protein:vir:1634 Length: 409 # 98.6 1.9E-07 1.2E-10 57.4 28.1 347 1-375 1-409 (409) 160 protein:vir:8184 Length: 474 # 98.6 2.2E-07 1.3E-10 57.1 25.9 390 1-407 1-474 (474) 161 protein:vir:103219 Length: 201 98.6 8.8E-09 5.5E-12 64.7 15.6 181 210-408 1-201 (201) 162 protein:vir:7987 Length: 456 # 98.6 2.6E-07 1.6E-10 56.7 23.6 386 1-408 1-456 (456) 163 protein:vir:94101 Length: 474 98.6 3E-07 1.9E-10 56.3 26.7 392 1-408 1-474 (474) 164 protein:vir:105889 Length: 474 98.6 3E-07 1.9E-10 56.3 26.7 392 1-408 1-474 (474) 165 protein:vir:79043 Length: 479 98.5 3.3E-07 2.1E-10 56.1 27.2 376 1-409 32-479 (479) 166 protein:vir:106639 Length: 481 98.5 6E-07 3.7E-10 54.7 28.4 392 1-409 29-481 (481) 167 protein:vir:3028 Length: 500 # 98.4 6.2E-07 3.8E-10 54.6 24.3 385 1-409 1-496 (500) 168 protein:vir:9815 Length: 500 # 98.4 6.2E-07 3.8E-10 54.6 24.3 385 1-409 1-496 (500) 169 protein:vir:105819 Length: 456 98.4 7.1E-07 4.4E-10 54.3 24.0 383 1-408 1-456 (456) 170 protein:vir:102602 Length: 456 98.4 7.1E-07 4.4E-10 54.3 24.0 383 1-408 1-456 (456) 171 protein:vir:4898 Length: 502 # 98.4 8.2E-07 5.1E-10 53.9 26.2 393 1-409 40-492 (502) 172 protein:vir:9568 Length: 410 # 98.4 1.1E-06 6.8E-10 53.3 23.7 356 7-403 1-410 (410) 173 protein:vir:4782 Length: 522 # 98.3 1.2E-06 7.7E-10 53.0 25.5 393 1-409 1-522 (522) 174 protein:vir:94805 Length: 492 98.3 1.5E-06 9.1E-10 52.6 26.5 380 1-409 43-491 (492) 175 protein:vir:80680 Length: 441 98.3 1.5E-06 9.5E-10 52.5 24.3 373 1-409 1-440 (441) 176 protein:vir:98883 Length: 517 98.3 1.7E-06 1.1E-09 52.2 22.9 393 1-407 1-517 (517) 177 protein:vir:1587 Length: 508 # 98.3 1.7E-06 1.1E-09 52.2 26.9 385 1-406 1-508 (508) 178 protein:vir:2341 Length: 488 # 98.2 2.2E-06 1.4E-09 51.6 22.7 387 1-409 1-486 (488) 179 protein:vir:93747 Length: 472 98.2 3E-06 1.9E-09 50.9 28.0 380 1-409 23-471 (472) 180 protein:vir:96494 Length: 501 98.2 3.2E-06 2E-09 50.7 28.8 393 1-409 38-496 (501) 181 protein:vir:95113 Length: 474 98.2 3.5E-06 2.2E-09 50.5 28.7 379 1-409 21-473 (474) 182 protein:vir:97336 Length: 492 98.1 4E-06 2.5E-09 50.1 27.6 381 1-409 43-491 (492) 183 protein:vir:99072 Length: 479 98.1 4.4E-06 2.7E-09 50.0 24.6 382 1-409 1-469 (479) 184 protein:vir:79703 Length: 505 98.1 4.9E-06 3.1E-09 49.7 25.3 384 1-403 1-505 (505) 185 protein:vir:95806 Length: 440 98.1 5.6E-06 3.5E-09 49.4 25.8 391 1-407 1-440 (440) 186 protein:vir:9751 Length: 422 # 98.1 5.6E-06 3.5E-09 49.4 27.9 355 1-401 4-422 (422) 187 protein:vir:3964 Length: 453 # 98.0 6E-06 3.7E-09 49.2 25.6 383 1-408 17-453 (453) 188 protein:vir:9871 Length: 429 # 98.0 6.8E-06 4.2E-09 48.9 25.9 368 1-409 1-428 (429) 189 protein:vir:78537 Length: 480 98.0 6.9E-06 4.3E-09 48.9 25.6 387 1-409 1-468 (480) 190 protein:vir:2732 Length: 501 # 98.0 7.4E-06 4.6E-09 48.7 29.6 395 1-409 38-500 (501) 191 protein:vir:96839 Length: 474 98.0 7.7E-06 4.8E-09 48.6 25.8 380 1-409 26-473 (474) 192 protein:vir:3609 Length: 452 # 98.0 9.5E-06 5.9E-09 48.1 26.3 377 1-408 17-452 (452) 193 protein:vir:78227 Length: 480 97.9 1.1E-05 6.9E-09 47.7 25.2 388 1-409 1-473 (480) 194 protein:vir:105461 Length: 470 97.9 1.1E-05 7E-09 47.7 25.8 379 1-407 1-470 (470) 195 protein:vir:9306 Length: 511 # 97.9 1.3E-05 7.9E-09 47.4 25.3 391 1-409 40-506 (511) 196 protein:vir:99522 Length: 470 97.9 1.4E-05 8.5E-09 47.3 26.4 379 1-409 19-470 (470) 197 protein:vir:105292 Length: 478 97.9 1.4E-05 8.8E-09 47.2 29.3 378 1-408 1-478 (478) 198 protein:vir:4073 Length: 279 # 97.9 2.5E-07 1.5E-10 56.8 8.9 268 35-378 1-279 (279) 199 protein:vir:103951 Length: 511 97.8 1.8E-05 1.1E-08 46.6 27.3 390 1-409 40-504 (511) 200 protein:vir:95899 Length: 474 97.8 2.2E-05 1.3E-08 46.2 25.9 379 1-408 26-474 (474) 201 protein:vir:96266 Length: 474 97.8 2.2E-05 1.3E-08 46.2 25.9 379 1-408 26-474 (474) 202 protein:vir:97447 Length: 474 97.7 2.8E-05 1.7E-08 45.6 28.7 380 1-408 21-474 (474) 203 protein:vir:94498 Length: 474 97.7 2.8E-05 1.7E-08 45.6 28.7 380 1-408 21-474 (474) 204 protein:vir:96240 Length: 511 97.7 3E-05 1.8E-08 45.4 26.7 392 1-408 40-511 (511) 205 protein:vir:97171 Length: 512 97.6 3.8E-05 2.4E-08 44.8 26.2 391 1-409 40-507 (512) 206 protein:vir:96366 Length: 511 97.6 4E-05 2.5E-08 44.7 25.4 392 1-408 40-511 (511) 207 protein:vir:78805 Length: 511 97.6 4E-05 2.5E-08 44.7 25.4 392 1-408 40-511 (511) 208 protein:vir:1236 Length: 483 # 97.6 4.7E-05 2.9E-08 44.3 30.2 382 1-409 34-482 (483) 209 protein:vir:733 Length: 453 # 97.5 5.6E-05 3.5E-08 43.9 24.2 379 1-409 11-451 (453) 210 protein:vir:107112 Length: 478 97.4 6.5E-05 4E-08 43.5 28.6 380 1-408 25-478 (478) 211 protein:vir:2500 Length: 501 # 97.4 7E-05 4.4E-08 43.3 24.4 376 1-409 23-500 (501) 212 protein:vir:78083 Length: 537 97.4 8.7E-05 5.4E-08 42.8 32.8 389 1-409 8-521 (537) 213 protein:vir:99781 Length: 511 97.1 0.00019 1.2E-07 41.0 25.2 394 1-409 40-510 (511) 214 protein:vir:106571 Length: 499 96.9 0.00025 1.5E-07 40.3 29.6 379 1-409 16-494 (499) 215 protein:vir:94546 Length: 506 96.9 0.00025 1.6E-07 40.3 24.0 392 1-409 22-501 (506) 216 protein:vir:102950 Length: 471 96.5 0.00055 3.4E-07 38.5 27.4 374 1-408 1-471 (471) 217 protein:vir:96179 Length: 468 96.2 0.00088 5.4E-07 37.3 28.7 372 1-409 1-468 (468) 218 protein:vir:104892 Length: 558 96.2 0.0009 5.6E-07 37.3 25.2 401 1-409 1-553 (558) 219 protein:vir:9922 Length: 489 # 95.8 0.0015 9.2E-07 36.1 24.7 388 1-409 13-483 (489) 220 protein:vir:100598 Length: 516 94.5 0.0042 2.6E-06 33.6 24.2 391 1-409 1-515 (516) 221 protein:vir:97376 Length: 320 93.9 0.0021 1.3E-06 35.3 9.3 299 1-382 1-320 (320) 222 protein:vir:101189 Length: 516 93.2 0.0084 5.2E-06 32.0 23.9 391 1-409 1-515 (516) 223 protein:vir:101806 Length: 516 93.2 0.0084 5.2E-06 32.0 23.9 391 1-409 1-515 (516) 224 protein:vir:98265 Length: 524 92.5 0.011 6.9E-06 31.3 24.5 394 1-409 4-524 (524) 225 protein:vir:104500 Length: 537 92.4 0.012 7.2E-06 31.2 23.5 398 1-404 1-537 (537) 226 protein:vir:106999 Length: 564 92.1 0.013 7.8E-06 31.0 23.5 403 1-409 1-562 (564) 227 protein:vir:105154 Length: 525 91.9 0.014 8.5E-06 30.8 18.1 393 1-409 27-517 (525) 228 protein:vir:81017 Length: 521 90.9 0.018 1.1E-05 30.1 24.2 393 1-409 8-520 (521) 229 protein:vir:103177 Length: 533 89.1 0.029 1.8E-05 29.0 25.1 403 1-409 1-530 (533) 230 protein:vir:6596 Length: 521 # 88.7 0.031 1.9E-05 28.9 24.1 393 1-409 5-520 (521) 231 protein:vir:95149 Length: 501 87.8 0.037 2.3E-05 28.5 24.6 389 1-408 1-501 (501) 232 protein:vir:106282 Length: 521 87.6 0.038 2.4E-05 28.4 24.7 390 1-409 1-519 (521) 233 protein:vir:102330 Length: 451 87.5 0.039 2.4E-05 28.3 28.7 372 1-408 1-451 (451) 234 protein:vir:5665 Length: 511 # 87.3 0.04 2.5E-05 28.3 23.9 387 4-409 1-510 (511) 235 protein:vir:108049 Length: 524 82.2 0.079 4.9E-05 26.6 23.1 394 1-409 1-524 (524) 236 protein:vir:102239 Length: 527 78.0 0.12 7.4E-05 25.6 24.3 380 1-409 1-519 (527) 237 protein:vir:101494 Length: 527 77.0 0.13 8E-05 25.4 24.2 380 1-409 1-519 (527) 238 protein:vir:6896 Length: 523 # 73.7 0.17 0.0001 24.8 22.9 394 1-409 1-523 (523) 239 protein:vir:94956 Length: 452 73.6 0.17 0.0001 24.8 26.9 376 1-409 1-451 (452) 240 protein:vir:97265 Length: 513 58.5 0.41 0.00025 22.7 27.4 381 1-409 1-496 (513) 241 protein:vir:7208 Length: 524 # 53.2 0.54 0.00033 22.1 23.6 394 1-409 1-524 (524) 242 protein:vir:103458 Length: 524 48.3 0.67 0.00042 21.5 24.0 394 1-409 1-524 (524) 243 protein:vir:80453 Length: 535 43.4 0.85 0.00053 21.0 24.0 387 1-407 32-535 (535) 244 protein:vir:78393 Length: 489 37.3 1.1 0.0007 20.3 24.3 389 1-407 1-489 (489) 245 protein:vir:3361 Length: 535 # 36.9 1.1 0.00071 20.3 16.9 345 1-409 44-484 (535) 246 protein:vir:94709 Length: 522 33.4 1.4 0.00084 19.9 22.7 349 1-409 42-479 (522) 247 protein:vir:1538 Length: 535 # 24.8 2.1 0.0013 18.8 16.6 345 1-409 44-484 (535) 248 protein:vir:80165 Length: 651 22.9 2.4 0.0015 18.5 16.0 384 1-409 122-605 (651) 249 protein:vir:96783 Length: 488 21.2 2.6 0.0016 18.3 25.4 379 1-406 14-488 (488) No 1 >protein:vir:96980 Length: 409 # NCBI annotation: ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239857;genbank:gi:66395516;genbank:GeneID:5133013 Probab=100.00 E-value=6.5e-109 Score=613.71 Aligned_cols=409 Identities=100% Similarity=1.425 Sum_probs=398.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++.||++|+|+++.+.+++++.+..++|..|.+.++.+++.+.|+++++|++||++||++||++||+++++.+..+|++ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~V~~ci~~ia~~ia~lp~~~~~~~~~~~~~l 80 (409) T protein:vir:96 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) T ss_pred CccccchhhhhhHHhhhhhccccccccccccccCccccccchhhHhhhHHHHHHHHHHHHhhhhCceEEeecccccchhH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (409) .++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|||++|..|++..+.++...+|.+....|..+.|+ T Consensus 81 ~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~ 160 (409) T protein:vir:96 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) T ss_pred HHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999999888999998889999999 Q ss_pred cceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCcee Q lcl|Aclame:pro 161 NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGIL 240 (409) Q Consensus 161 ~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409) ++||||++.+++.++++|+||+..+..++.++.+++++.+..++++++++++.++.++++++++++++|++.++++|+++ T Consensus 161 ~~evih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~n~g~~~ 240 (409) T protein:vir:96 161 NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGIL 240 (409) T ss_pred cccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCCCCHHHHHHHHHHHHHHhhcCCCee Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 241 FQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) Q Consensus 241 vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~l 320 (409) ++++|++|++++++++|+|++|.+++++++||++|||||++||+.+++++++.|++.+.|++++|.|++++||++||++| T Consensus 241 vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~s~~e~~~~~f~~~~l~P~~~~ie~~l~~~L 320 (409) T protein:vir:96 241 FQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) T ss_pred ecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccC Q lcl|Aclame:pro 321 LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLK 400 (409) Q Consensus 321 l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~ 400 (409) |++.++..+.+++||++++++.|.+++++++++++++|++|+||+|+++|+||+||||++++++|++|++...+.++..| T Consensus 321 l~~~~~~~g~~i~fd~~~ll~~d~~~~~e~~~~~~~~G~~T~NE~R~~~g~~pi~ggD~~~~~~n~~~~~~~~~~~~~~~ 400 (409) T protein:vir:96 321 LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLK 400 (409) T ss_pred CCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcceeeecccccccccchhhccccc Confidence 99998888999999999999999999999999999999999999999999999999999999999999999988888999 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 401 GGDKNVNES 409 (409) Q Consensus 401 gg~~n~~~~ 409 (409) |||+|+++| T Consensus 401 gG~~n~~e~ 409 (409) T protein:vir:96 401 GGDKNVNES 409 (409) T ss_pred CCCCCcCCC Confidence 999999999 No 2 >protein:vir:94426 Length: 409 # NCBI annotation: ORF009 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240003;genbank:gi:66395665;genbank:GeneID:5133086 Probab=100.00 E-value=3e-108 Score=610.03 Aligned_cols=409 Identities=99% Similarity=1.421 Sum_probs=398.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++.+|++|+|+++...|+..+.+.+.+|..|.+.++.+++.+.|+++++|++||++||++||++||+++++.+..+|++ T Consensus 1 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~Ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) T protein:vir:94 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) T ss_pred CcccccchhhhhHHhhhhhcCCcccccccccccCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeecccccchhH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (409) .++|+.+||++||+++||+.++.+++++||+|+++.|+..|.+.+|+|++|+.|++..+.++...+|.++...|..+.|+ T Consensus 81 ~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~~~~ 160 (409) T protein:vir:94 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) T ss_pred HHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999999888999999899999999 Q ss_pred cceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCcee Q lcl|Aclame:pro 161 NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGIL 240 (409) Q Consensus 161 ~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409) ++||||+|++++.++++|+||+.++..++.++.+++++++..++++++++++.++.+++++++++++.|++.++++++++ T Consensus 161 ~~dvih~r~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~ 240 (409) T protein:vir:94 161 NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGIL 240 (409) T ss_pred cccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEecCCCCCHHHHHHHHHHHHHHhhcCCCee Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 241 FQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) Q Consensus 241 vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~l 320 (409) |+++|++|+++++++.|+|++|.+++++++||++|||||.+|++.+++++++.|++.+.|+++||.|++++||++||++| T Consensus 241 vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~~L 320 (409) T protein:vir:94 241 FQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) T ss_pred ecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999999999 Q ss_pred cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccC Q lcl|Aclame:pro 321 LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLK 400 (409) Q Consensus 321 l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~ 400 (409) |++.++..+.+|+||++++++.|.+++++++++++++|++|+||+|+++|+||+||||++++++|++|++.+.+.++..| T Consensus 321 l~~~~~~~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~k 400 (409) T protein:vir:94 321 LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLK 400 (409) T ss_pred CCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeEeecccccccccchhhccccc Confidence 99998888999999999999999999999999999999999999999999999999999999999999999988888899 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 401 GGDKNVNES 409 (409) Q Consensus 401 gg~~n~~~~ 409 (409) |||+|+++| T Consensus 401 GG~~n~~e~ 409 (409) T protein:vir:94 401 GGDKNVNES 409 (409) T ss_pred CCCCCcCCC Confidence 999999999 No 3 >protein:vir:93943 Length: 409 # NCBI annotation: ORF010 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239936;genbank:gi:66395598;genbank:GeneID:5131009 Probab=100.00 E-value=4.3e-108 Score=609.23 Aligned_cols=409 Identities=99% Similarity=1.419 Sum_probs=398.1 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++.|+++|+|+++.+.|++.+...+.++.+|...++.+++.+.|+++++|++||++||++||++||+++++++..++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~V~~ci~~Ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) T protein:vir:93 1 MAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) T ss_pred CCccchhhhhhhhhhhhhhccccccccccccccCccccccchhhhhccHHHHHHHHHHHHhhhhCceeEeeccccccchH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (409) .++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+||+|+.|++..+.++...+|.++...|..+.|+ T Consensus 81 ~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~g~~~~~~ 160 (409) T protein:vir:93 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) T ss_pred HHHHhhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEEEEc Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999999 Q ss_pred cceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCcee Q lcl|Aclame:pro 161 NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGIL 240 (409) Q Consensus 161 ~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (409) ++||||++++++.++++|+||+.++..++.++.+++++++..++++++++++.++.++++++++++++|++.++++++++ T Consensus 161 ~~eVih~r~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g~~~ 240 (409) T protein:vir:93 161 NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENGGIL 240 (409) T ss_pred cccEEEeCCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHHHHHHHHHhhcCCCee Confidence 99999999988889999999999999999999999999999999998999999999999999999999999999999999 Q ss_pred ecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 241 FQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) Q Consensus 241 vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~l 320 (409) |+++|++|+++++++.|+||+|.+++++++||++|||||.+||+.+++++++.|++.+.|+..||.|++++||++||++| T Consensus 241 vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~l~~~L 320 (409) T protein:vir:93 241 FQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) T ss_pred ecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccC Q lcl|Aclame:pro 321 LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLK 400 (409) Q Consensus 321 l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~ 400 (409) +++.++..+.+|+||++++++.|.+++++++++++++|++|+||+|+++|+||+||||++++++|++|++...+.++..+ T Consensus 321 l~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~~~~~~~~~~~~~ 400 (409) T protein:vir:93 321 LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLK 400 (409) T ss_pred CCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccchhhccccc Confidence 99998888999999999999999999999999999999999999999999999999999999999999999999988999 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 401 GGDKNVNES 409 (409) Q Consensus 401 gg~~n~~~~ 409 (409) |||+|+++| T Consensus 401 gG~~n~~e~ 409 (409) T protein:vir:93 401 GGDKNVNES 409 (409) T ss_pred CCCCCcCCC Confidence 999999999 No 4 >protein:vir:2683 Length: 412 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075502;genbank:gi:12719431;genbank:GeneID:920150 Probab=100.00 E-value=1.7e-106 Score=600.41 Aligned_cols=409 Identities=98% Similarity=1.408 Sum_probs=396.1 Q ss_pred Ccch---hhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccccc Q lcl|Aclame:pro 1 MAKE---NIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVN 77 (409) Q Consensus 1 M~~~---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 77 (409) |.|+ ++++|+++.+.+.|+..+...+++|+.|.+.++.+++.+.++++|+|++||++||++||++||+++++.+..+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~a~~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~~ 80 (412) T protein:vir:26 1 MNVIAKENIVTRIKKKLIDNWIDQSTSKLYDFSPWKNRSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVN 80 (412) T ss_pred CccchhhhhhhhhhhhHhhhhhcccccccccccccCCccccccchhhhhccHHHHHHHHHHHHhHhhCceeEeecccccc Confidence 7765 8899999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEE Q lcl|Aclame:pro 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKL 157 (409) Q Consensus 78 ~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~ 157 (409) |++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|+.|++..+.++...+|.++...|..+ T Consensus 81 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~g~~~ 160 (412) T protein:vir:26 81 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKL 160 (412) T ss_pred chHHHHHHhhcccCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCceeEEEEeCCCcEEEEEEEcCCceEE Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999 Q ss_pred EEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCC Q lcl|Aclame:pro 158 IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENG 237 (409) Q Consensus 158 ~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (409) .|+++||+|++++++.++++|+||+.++..++.++.+++++++..++++++++++.++.++++++++++++|++.++++| T Consensus 161 ~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~a~~~~~~~~~~~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~~~g 240 (412) T protein:vir:26 161 IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEKRQQVLEDFKQYYEENG 240 (412) T ss_pred EEccccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHHHHHHHHHhhcCC Confidence 99999999999988889999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFN 317 (409) Q Consensus 238 ~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln 317 (409) +++|+++|++|++++++++|+||+|.+++++++||++|||||.+|++.+++++++.|++.+.|++++|.|++++||++|| T Consensus 241 ~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln 320 (412) T protein:vir:26 241 GILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFN 320 (412) T ss_pred CeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999 Q ss_pred HhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccccccc Q lcl|Aclame:pro 318 RKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRK 397 (409) Q Consensus 318 ~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~ 397 (409) ++||++.++..+.+|+||++++++.|.+++++++++++++|++|+||+|+++|+||+||||++++++|++|++.+.+.++ T Consensus 321 ~kLl~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~~~~~~~~~~~ 400 (412) T protein:vir:26 321 RKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRK 400 (412) T ss_pred hhcCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecccccccccchhhcc Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999988 Q ss_pred ccCCCCCCCCCC Q lcl|Aclame:pro 398 SLKGGDKNVNES 409 (409) Q Consensus 398 ~~~gg~~n~~~~ 409 (409) ..||||+|+++| T Consensus 401 ~~~gG~~n~~e~ 412 (412) T protein:vir:26 401 SLKGGDKNVNES 412 (412) T ss_pred cccCCCCCcCCC Confidence 999999999999 No 5 >protein:vir:1380 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612832;genbank:gi:20065966;genbank:GeneID:935782 Probab=100.00 E-value=2e-96 Score=545.29 Aligned_cols=405 Identities=25% Similarity=0.383 Sum_probs=359.9 Q ss_pred Ccchh-hhhhhhhhhhcccccCc-----ccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc Q lcl|Aclame:pro 1 MAKEN-IVTRIKKKLIDNWIDQS-----ASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK 74 (409) Q Consensus 1 M~~~~-~~~r~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 74 (409) |+++. +|+|.++.......... ......|..+.......++.+.++++++|++||++||++||++|++++++.+ T Consensus 1 MG~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~al~~~~v~~ci~~ia~~iA~lp~~~~~~~~ 80 (422) T protein:vir:13 1 MGFLRGLFNKKNNNDEKRSNYDEDIGIDISDSNFWEKFGIKLNFSVRGKRALKENTVYVCTKIRAESIGKLSLKIYKDKE 80 (422) T ss_pred CchhhhhhhccCCccchhhhhhhccccccCcchhhhhccccCCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEecCc Confidence 99975 67775543222211110 0011112233334456688899999999999999999999999999998664 Q ss_pred -cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc-----eeEEE Q lcl|Aclame:pro 75 -VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-----ELYYS 148 (409) Q Consensus 75 -~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~-----~~~~~ 148 (409) ..+|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+|++|+.|++..+.++. ..+|. T Consensus 81 ~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~~~~~~~~~~~~~~~~~y~ 160 (422) T protein:vir:13 81 EYKEHELYYLLRYKPNPLMSSINFWKCLETQRTLKGNAYAYIERDRKGKIIGLYPINSDNVTKIIDDDNFLSSLSKVWYV 160 (422) T ss_pred ccccchHHHHHhhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEcCCcceeccceEEEE Confidence 456789999999999999999999999999999999999999999999999999999999999988874 35678 Q ss_pred EEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHH Q lcl|Aclame:pro 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVL 226 (409) Q Consensus 149 ~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (409) ++..+|....+++++|||++.+.+.++++|.||+..+..++.++.++++++.+.+.++ ++++++.++.+++++.++++ T Consensus 161 ~~~~~g~~~~~~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~ 240 (422) T protein:vir:13 161 VTDKNGKEHKLLPDEMLHFIGDITLDGLIGIKPLDYLRCTIENGRATQEFINKFFKNGLSIKGIVQYVGDLDEKAKKIFK 240 (422) T ss_pred EEeCCCeEEEEcccceEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHH Confidence 8888899999999999999988788999999999999999999999999988877664 67888999999999999999 Q ss_pred HHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 227 EDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 227 ~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) ++|++.++ |+++++|+++|++|+++++++.|+||+|.+++++++||++|||||.+|+..+.+++++.|++.+.|+++ T Consensus 241 ~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~e~~~~~f~~~ 320 (422) T protein:vir:13 241 KEFESMSNGLENAHSISLLPFGYQFQPISLSMADAQFLENSKLTKRELAATFGMKSYHLNDLERATFNNLTEQQKDFYVT 320 (422) T ss_pred HHHHHHhcCccccCCceecCCCceeeeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHH Confidence 99999885 577899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeec Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLIS 383 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~ 383 (409) +|.|++++||++||++||++.++..+++++||++++++.|.+++++.+++++++|+||+||+|+++|+||+||||++++| T Consensus 321 ~l~P~~~~ie~~l~~~Ll~~~~~~~g~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~ 400 (422) T protein:vir:13 321 TLQSSLTVYEQEIQDKLFSQYETLQDVKAEFNVDTILRSDIKTRYEAYRIGIQGGFIEANEARRRENLPPVEGGDRLLVN 400 (422) T ss_pred HHHHHHHHHHHHHHHhhCChhhhcCCceEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeec Confidence 99999999999999999999988889999999999999999999999999999999999999999999999999999999 Q ss_pred ccccchhcccccccccCCCCCCCC Q lcl|Aclame:pro 384 GDLYPIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 384 ~n~~~~~~~~~~~~~~~gg~~n~~ 407 (409) +|++|++..++. +.+||+++++ T Consensus 401 ~n~~~l~~~~~~--~~~~g~~~g~ 422 (422) T protein:vir:13 401 GNMIPIEMAGEQ--YKKGGEKGGK 422 (422) T ss_pred cCccchhhcccc--cccCCCcCCC Confidence 999999987753 4678888888 No 6 >protein:vir:102080 Length: 429 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512313;genbank:gi:89152482;genbank:GeneID:3953073 Probab=100.00 E-value=7.8e-96 Score=542.00 Aligned_cols=406 Identities=25% Similarity=0.400 Sum_probs=352.4 Q ss_pred Ccch-hhhhhhhhhh-hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecc----- Q lcl|Aclame:pro 1 MAKE-NIVTRIKKKL-IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDY----- 73 (409) Q Consensus 1 M~~~-~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~----- 73 (409) |+++ ++|+..+... ...........+..|.+. +.++..++.+.++++++|++||++||++||++||+++++. T Consensus 1 M~~~~~~f~~~~r~~~~~~~~~~~~~~~~~~~g~-~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~l~~~~~~~~~~~~~ 79 (429) T protein:vir:10 1 MDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLGI-SPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEYGIQ 79 (429) T ss_pred CchhhhhhcccccCcccccccCCChHHHHHHhcC-CCCcceechhhhhccHHHHHHHHHHHHhhccCceEEEEecCCcee Confidence 9996 5555332221 111111222223333332 3356678889999999999999999999999999999865 Q ss_pred ccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce----eEEEE Q lcl|Aclame:pro 74 KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE----LYYSI 149 (409) Q Consensus 74 ~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~----~~~~~ 149 (409) +..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|++|++..++++.. ..|+. T Consensus 80 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~~~~~~~~ 159 (429) T protein:vir:10 80 RGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKMWYV 159 (429) T ss_pred eccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceEEEE Confidence 34567899999999999999999999999999999999999999999999999999999999998876533 22334 Q ss_pred EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHH Q lcl|Aclame:pro 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLE 227 (409) Q Consensus 150 ~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 227 (409) ....|..+.|+++||||+++..+.++++|+||+..+..++.++.+++++..+.+.++ ++++++.++.+++++.+++++ T Consensus 160 ~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~~~ 239 (429) T protein:vir:10 160 VNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKVFRE 239 (429) T ss_pred EccCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHHHH Confidence 456678889999999999988888999999999999999999999999988877664 678889999999999999999 Q ss_pred HHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHH Q lcl|Aclame:pro 228 DFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHT 304 (409) Q Consensus 228 ~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~ 304 (409) +|++.++ |+++++|+++|++|+++++++.|+|++|.+++++++||++|||||.+||..+.+++++.|++.+.|++.+ T Consensus 240 ~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~sn~e~~~~~f~~~~ 319 (429) T protein:vir:10 240 NFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFYTDT 319 (429) T ss_pred HHHHHhccccccCceeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHH Confidence 9999884 5789999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecc Q lcl|Aclame:pro 305 LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG 384 (409) Q Consensus 305 l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~ 384 (409) |.|++++||++||++||++.++..+.+++||++.+++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+ T Consensus 320 l~P~~~~ie~~ln~kl~~~~~~~~g~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~ 399 (429) T protein:vir:10 320 LQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLLVNG 399 (429) T ss_pred HHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeecc Confidence 99999999999999999999998999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 385 DLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 385 n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |++|++...+. ..|||++|++.+ T Consensus 400 n~~~~d~~~~~--~~k~g~~~~~~~ 422 (429) T protein:vir:10 400 NMLPIDMAGQA--YLKGGDTNGEVS 422 (429) T ss_pred cccchhhcccc--ccCCCCCCCCCC Confidence 99999876543 345666555444 No 7 >protein:vir:1266 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690758;genbank:gi:22854998;genbank:GeneID:955213 Probab=100.00 E-value=3.2e-95 Score=538.63 Aligned_cols=404 Identities=25% Similarity=0.366 Sum_probs=354.1 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-----c Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-----V 75 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-----~ 75 (409) |.|.+||.|..... .....-......-++.....++..|+.+.++++++|++||++||++||++||+++++++ . T Consensus 1 m~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~Ia~~ia~l~~~~~~~~~~~~~~~ 79 (416) T protein:vir:12 1 MLLERMFEKRSGSS-DHEDGFNNILLNMFGGRKTASGERVSESNSLVQPDIFACVNVLSDDIAKLPIHTYKRTDGGIERK 79 (416) T ss_pred CccchhcccccCcc-ccCccchhHHHHhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCccccc Confidence 99999998753321 11000000111123344455667788999999999999999999999999999998653 2 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCe Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGN 155 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~ 155 (409) ..|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+||+|.+|++..+.++...+|.+. .+|. T Consensus 80 ~~~~l~~~l~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~~~~~~~~~~-~~g~ 158 (416) T protein:vir:12 80 PEHKSAHAVYARPNPYMTAFTWKKLMMTHVLTWGNAYSYIQFGSHGYPEALFPLRPDYTNAYVHPTTGMLWYQTV-LNGK 158 (416) T ss_pred cccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEeCCCcEEEEEEe-cCCe Confidence 457889999999999999999999999999999999999999999999999999999999999888888777764 4577 Q ss_pred EEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 156 KLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 156 ~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (409) .+.+++++|+|+++++ .++++|+||+.++..++.++.+++++..+.+.++ ++++++.++.++++++++++++|+... T Consensus 159 ~~~~~~~eiih~~~~~-~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~~~~~~ 237 (416) T protein:vir:12 159 AIELYDYEVLHFKGLS-TDGIHGKSPIGVVREHIGAQAAATKYNAKLYKNEATPRGILKVPAFLDEKPKENVRKEWKRVN 237 (416) T ss_pred EEEecCccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEecCCCCCHHHHHHHHHHHHHHh Confidence 8899999999999875 4679999999999999999999999988776654 678999999999999999999998765 Q ss_pred cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYE 313 (409) Q Consensus 234 ~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie 313 (409) ++++++|+++|++|+++++++.|+|++|.+++++++||++|||||.+|+..+.+++++.|++.+.|+.++|.|++++|| T Consensus 238 -~~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l~P~~~~ie 316 (416) T protein:vir:12 238 -KVENIAIIDYGLEYQSISMPLQEAQFVESMKFNKAQISMIYKVPLHKLNELDKATFSNIEHQSIEYVRNTLQPWIVNFE 316 (416) T ss_pred -cCCCeeecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCccCCCcccHHHHHHHHHHHHHHHHHHHHH Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccc Q lcl|Aclame:pro 314 EEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPL 393 (409) Q Consensus 314 ~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~ 393 (409) ++||++|+++.++..+++++||++++++.|.+++++++.+++++|++|+||+|+++|+||+||||++++|+|++|++... T Consensus 317 ~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~n~~~~~~~~ 396 (416) T protein:vir:12 317 QELNVKLFLDHDQKSGHYVKFNIDSELRGDSKTQAEYLKTLHETGVLNKDEIRELLERNPIENGDKYISSLNYVFLDFLE 396 (416) T ss_pred HHHHHhhcCchhhcCCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccccccc Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999998876 Q ss_pred ccccc-----cCCCCCCCCCC Q lcl|Aclame:pro 394 ELRKS-----LKGGDKNVNES 409 (409) Q Consensus 394 ~~~~~-----~~gg~~n~~~~ 409 (409) +.+.. .+||| +.++| T Consensus 397 ~~~~~~~~~~~~gge-~~~~g 416 (416) T protein:vir:12 397 EYQRLKAGGAMKGGD-NKNEG 416 (416) T ss_pred hhhccccccccCCCC-CcCCC Confidence 65543 35555 44455 No 8 >protein:vir:102855 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338135;genbank:gi:77020228;genbank:GeneID:3703764 Probab=100.00 E-value=8.4e-95 Score=536.34 Aligned_cols=406 Identities=25% Similarity=0.399 Sum_probs=349.9 Q ss_pred Ccchhhhhhhhhhhhcc-----cccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN-----WIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 74 (409) |++++.+....+...+. ........+..|.+ ...++..++.+.++++++|++||++||++||++|++++++++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 79 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLG-ISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEY 79 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhC-CCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCC Confidence 99855443322211111 01111112223332 233566788899999999999999999999999999998652 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce----eE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE----LY 146 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~----~~ 146 (409) ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|+.|++..++++.. .. T Consensus 80 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~ 159 (432) T protein:vir:10 80 GIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKM 159 (432) T ss_pred ceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceE Confidence 4568899999999999999999999999999999999999999999999999999999999998875432 22 Q ss_pred EEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHH Q lcl|Aclame:pro 147 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQ 224 (409) Q Consensus 147 ~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 224 (409) |+.....|..+.|+++||||++++.+.++++|+||+..+..++..+.++++++.+.+.++ ++++++.++.+++++.++ T Consensus 160 ~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~ 239 (432) T protein:vir:10 160 WYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKV 239 (432) T ss_pred EEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHH Confidence 334445677889999999999988888999999999999999999999999988877664 678889999999999999 Q ss_pred HHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHH Q lcl|Aclame:pro 225 VLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYL 301 (409) Q Consensus 225 ~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~ 301 (409) ++++|++.++ |+++++|+++|++|+++++++.|+|++|.+++++++||++|||||++||..+.+++++.|++.+.|+ T Consensus 240 ~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~ 319 (432) T protein:vir:10 240 FRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFY 319 (432) T ss_pred HHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHH Confidence 9999999885 5789999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEe Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPL 381 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~ 381 (409) +++|.|++++||++||++||++.++..+.+++||++++++.|.+++++++++++++|++|+||+|+++|+||+||||+++ T Consensus 320 ~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~ 399 (432) T protein:vir:10 320 TDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLL 399 (432) T ss_pred HHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEe Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +|+|++|++...+. ..|||++|++.+ T Consensus 400 ~~~n~~~~~~~~~~--~~k~~~~~~~~~ 425 (432) T protein:vir:10 400 VNGNMLPIDMAGQA--YLKGGDTNGEVS 425 (432) T ss_pred ecccccchhhcccc--ccCCCCCCCCCC Confidence 99999999876543 345555544433 No 9 >protein:vir:105002 Length: 432 # NCBI annotation: putative phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459967;genbank:gi:85701382;genbank:GeneID:3882143 Probab=100.00 E-value=8.4e-95 Score=536.34 Aligned_cols=406 Identities=25% Similarity=0.399 Sum_probs=349.9 Q ss_pred Ccchhhhhhhhhhhhcc-----cccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN-----WIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 74 (409) |++++.+....+...+. ........+..|.+ ...++..++.+.++++++|++||++||++||++|++++++++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 79 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLG-ISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEY 79 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhC-CCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCC Confidence 99855443322211111 01111112223332 233566788899999999999999999999999999998652 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce----eE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE----LY 146 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~----~~ 146 (409) ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|+.|++..++++.. .. T Consensus 80 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~ 159 (432) T protein:vir:10 80 GIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKM 159 (432) T ss_pred ceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceE Confidence 4568899999999999999999999999999999999999999999999999999999999998875432 22 Q ss_pred EEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHH Q lcl|Aclame:pro 147 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQ 224 (409) Q Consensus 147 ~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 224 (409) |+.....|..+.|+++||||++++.+.++++|+||+..+..++..+.++++++.+.+.++ ++++++.++.+++++.++ T Consensus 160 ~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~ 239 (432) T protein:vir:10 160 WYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKV 239 (432) T ss_pred EEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHH Confidence 334445677889999999999988888999999999999999999999999988877664 678889999999999999 Q ss_pred HHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHH Q lcl|Aclame:pro 225 VLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYL 301 (409) Q Consensus 225 ~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~ 301 (409) ++++|++.++ |+++++|+++|++|+++++++.|+|++|.+++++++||++|||||++||..+.+++++.|++.+.|+ T Consensus 240 ~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~ 319 (432) T protein:vir:10 240 FRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFY 319 (432) T ss_pred HHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHH Confidence 9999999885 5789999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEe Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPL 381 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~ 381 (409) +++|.|++++||++||++||++.++..+.+++||++++++.|.+++++++++++++|++|+||+|+++|+||+||||+++ T Consensus 320 ~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~ 399 (432) T protein:vir:10 320 TDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLL 399 (432) T ss_pred HHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEe Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +|+|++|++...+. ..|||++|++.+ T Consensus 400 ~~~n~~~~~~~~~~--~~k~~~~~~~~~ 425 (432) T protein:vir:10 400 VNGNMLPIDMAGQA--YLKGGDTNGEVS 425 (432) T ss_pred ecccccchhhcccc--ccCCCCCCCCCC Confidence 99999999876543 345555544433 No 10 >protein:vir:107605 Length: 432 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338186;genbank:gi:77020175;genbank:GeneID:3703736 Probab=100.00 E-value=8.4e-95 Score=536.34 Aligned_cols=406 Identities=25% Similarity=0.399 Sum_probs=349.9 Q ss_pred Ccchhhhhhhhhhhhcc-----cccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN-----WIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 74 (409) |++++.+....+...+. ........+..|.+ ...++..++.+.++++++|++||++||++||++|++++++++ T Consensus 1 M~~~~r~~~~~~~~~r~~~~~~~~~~~~~~~~~~~g-~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 79 (432) T protein:vir:10 1 MKIVDSVKKFFNFEKRQTSQVIELNKDDEKLLEWLG-ISPSTISVKGKNALKVATVFACIKILSESVSKLPLKIYQEDEY 79 (432) T ss_pred CChHHHHHHhcCccccCcccccccCCchHHHHHHhC-CCcCccccchhhhhccHHHHHHHHHHHHhhccCceEEEEecCC Confidence 99855443322211111 01111112223332 233566788899999999999999999999999999998652 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce----eE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE----LY 146 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~----~~ 146 (409) ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|+.|++..++++.. .. T Consensus 80 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~~~~~~~~~~ 159 (432) T protein:vir:10 80 GIQRGTKHYLNNLLRLRPNPYMSSMNFFGSLEAQKNLYGNSYANIEFDRKGKVQALWPIDASKVTVYIDDVGLLNSKTKM 159 (432) T ss_pred ceeeccccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCcccccccceE Confidence 4568899999999999999999999999999999999999999999999999999999999998875432 22 Q ss_pred EEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHH Q lcl|Aclame:pro 147 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQ 224 (409) Q Consensus 147 ~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 224 (409) |+.....|..+.|+++||||++++.+.++++|+||+..+..++..+.++++++.+.+.++ ++++++.++.+++++.++ T Consensus 160 ~y~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~ 239 (432) T protein:vir:10 160 WYVVNTGGQQRVLKPEEILHFKNGITLDGLVGVPTMEYLKSTLENSASADKFINNFYKQGLQVKGLVQYVGDLNEDAKKV 239 (432) T ss_pred EEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHH Confidence 334445677889999999999988888999999999999999999999999988877664 678889999999999999 Q ss_pred HHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHH Q lcl|Aclame:pro 225 VLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYL 301 (409) Q Consensus 225 ~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~ 301 (409) ++++|++.++ |+++++|+++|++|+++++++.|+|++|.+++++++||++|||||++||..+.+++++.|++.+.|+ T Consensus 240 ~~~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~s~~e~~~~~~~ 319 (432) T protein:vir:10 240 FRENFESMSSGLQNSHRIALMPVGYQFQPISLNMSDAQFLENTELTIRQIATAFGIKMHQLNDLSKATLNNIEQQQQQFY 319 (432) T ss_pred HHHHHHHHhcccccCCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHH Confidence 9999999885 5789999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEe Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPL 381 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~ 381 (409) +++|.|++++||++||++||++.++..+.+++||++++++.|.+++++++++++++|++|+||+|+++|+||+||||+++ T Consensus 320 ~~~l~P~~~~ie~~ln~kLl~~~~~~~g~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~ggD~~~ 399 (432) T protein:vir:10 320 TDTLQATLTMYEQEMTYKLFLDSELDKGFYSKFNVDAILRADIKTRYEAYRTGIQGGFLKPNEARSKEDLPPEAGGDRLL 399 (432) T ss_pred HHHHHHHHHHHHHHHHHhhcChhhcCCCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEe Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred ecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +|+|++|++...+. ..|||++|++.+ T Consensus 400 ~~~n~~~~~~~~~~--~~k~~~~~~~~~ 425 (432) T protein:vir:10 400 VNGNMLPIDMAGQA--YLKGGDTNGEVS 425 (432) T ss_pred ecccccchhhcccc--ccCCCCCCCCCC Confidence 99999999876543 345555544433 No 11 >protein:vir:102118 Length: 409 # NCBI annotation: phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699943;genbank:gi:110804051;genbank:GeneID:4206661 Probab=100.00 E-value=7.9e-94 Score=531.00 Aligned_cols=395 Identities=28% Similarity=0.415 Sum_probs=351.6 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc----cc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK----VV 76 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~----~~ 76 (409) |.|.++|+|...... .+......|.+ .+.++..|+.+.++++++|++||++||++||++||+++++.+ .. T Consensus 1 m~f~~~~~~~~~~~~-----~~~~~~~~~~g-~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 74 (409) T protein:vir:10 1 MLFRKGFKNQSQEIS-----IDDKKILEWLG-INPSETYVNGKSCLKQATVFGCIRILSDNISKLPIKIYQKKDGIKRVP 74 (409) T ss_pred CcccccccCcCCCCC-----CChHHHHHHhc-CCcCcceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCeeecc Confidence 999888887433211 11111122222 233556788899999999999999999999999999997643 34 Q ss_pred cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce-----eEEEEEc Q lcl|Aclame:pro 77 NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE-----LYYSIHA 151 (409) Q Consensus 77 ~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~-----~~~~~~~ 151 (409) .+++.++|+.+||++||+++||+.++.+++++||||++++|+..|.+.+|+|++|++|++..+.++.. ..|.++. T Consensus 75 ~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~~~~~y~~~~ 154 (409) T protein:vir:10 75 DHYLEYLLKLRPNPYMSSSDFWKCIEVQRNIYGNAYVALDFKKNGEIKGLYPLKSDGMKIFVDDTGLLNSENNVWYLYTD 154 (409) T ss_pred CchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCCceEEEEcCCccccccceEEEEEEe Confidence 57899999999999999999999999999999999999999999999999999999999998876543 4577778 Q ss_pred CCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHH Q lcl|Aclame:pro 152 ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDF 229 (409) Q Consensus 152 ~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 229 (409) ..|..+.++++||||+|++++ ++++|+||+..+..++.+..++++++.+.+.++ ++++++.++.+++++.++++++| T Consensus 155 ~~g~~~~~~~~evih~r~~~~-d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~~~ 233 (409) T protein:vir:10 155 DLGQRHKFMSDEILHFKGLTA-DGLAGLSVIELLNHLIENGKSSETYLNNFFKNGLQVKGLVQYAGDLNPEAEEVFKENF 233 (409) T ss_pred CCceeEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHH Confidence 888899999999999998765 678999999999999999999999988777664 67889999999999999999999 Q ss_pred HHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLL 306 (409) Q Consensus 230 ~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~ 306 (409) ++.++ |+|+++|+++|++|++++.++.|+|++|.++++.++||++|||||.+|+..+.+++++.|++.+.|++.+|. T Consensus 234 ~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~e~~~~~f~~~~l~ 313 (409) T protein:vir:10 234 ERMSSGLKNAHRIAMLPIGYKFEPISQKLVDAQFLENSQLTIRQIASVFGVKMHQLNDLDRATHSNITEQNREFYIDTLQ 313 (409) T ss_pred HHHhccccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCccccHHHHHHHHHHHHHH Confidence 99885 578899999999999999999999999999999999999999999999999899999999999999999999 Q ss_pred HHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccc Q lcl|Aclame:pro 307 PIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDL 386 (409) Q Consensus 307 P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~ 386 (409) |++++||++||++||++.++..+++++||++++++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++|+|+ T Consensus 314 P~~~~ie~~ln~kL~~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~ggD~~~~~~n~ 393 (409) T protein:vir:10 314 SILNMYELEINYKLFLISEIKNGFYSKFNVDTILRADIKTRYESYKEAIQNGFKTPNEIRELEEDEPLEGGDVLLINGNM 393 (409) T ss_pred HHHHHHHHHHHHhhcCchhccCCcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccCc Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999 Q ss_pred cchhcccccccccCCCCC Q lcl|Aclame:pro 387 YPIDTPLELRKSLKGGDK 404 (409) Q Consensus 387 ~~~~~~~~~~~~~~gg~~ 404 (409) +|++...+ +..||||+ T Consensus 394 ~~~~~~~~--~~~kgGe~ 409 (409) T protein:vir:10 394 IPVKMAGE--QYSKGGEK 409 (409) T ss_pred cchhhccc--cccccCCC Confidence 99987654 34678888 No 12 >protein:vir:100150 Length: 437 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945033;genbank:gi:38707893;genbank:GeneID:2744197 Probab=100.00 E-value=2.3e-93 Score=528.43 Aligned_cols=404 Identities=20% Similarity=0.300 Sum_probs=352.4 Q ss_pred Cc--chhhhhhhhhhhhcccccCcccccc-----cccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecc Q lcl|Aclame:pro 1 MA--KENIVTRIKKKLIDNWIDQSASKLY-----DFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDY 73 (409) Q Consensus 1 M~--~~~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~ 73 (409) |+ +.++++|++.++. .|++.+..... .|+...+.++..|+.+.++++++||+||++||++||++||++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~ci~~Ia~~ia~lp~~~~~~~ 79 (437) T protein:vir:10 1 MKQGKQRALGRIKSSFL-KWLGVPISLTDGSFWSAWGGMGSSSGETVTADSALQLSAVWSCVRLIAETIATLPLNLYQTK 79 (437) T ss_pred CCcchhhhhhhhHHhhh-hhcCCcccCCchhHHHhhcccccCCCceechHhhhccHHHHHHHHHHHHHHhhCceeEEEEc Confidence 99 7899999988876 45555433211 2344445566778999999999999999999999999999999854 Q ss_pred c------cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEE Q lcl|Aclame:pro 74 K------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYY 147 (409) Q Consensus 74 ~------~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~ 147 (409) + ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+. |++.+|||++|..|++..+.+|.. .| T Consensus 80 ~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~-g~~~~L~~l~p~~v~i~~~~~g~~-~y 157 (437) T protein:vir:10 80 PDGTRVLAKQHRLYTVIHSQPNAENTAAEFWEVIVASMLLWGNGYARKLRSA-GVLIGLELMLPQRTTVKRLTSGAL-QY 157 (437) T ss_pred CCCceeeccccHHHHHhhccCCcCCCHHHHHHHHHHHHhhcCCeEEEEEecC-CcEEEEEEEcCcceEEEECCCCeE-EE Confidence 2 246889999999999999999999999999999999999999994 999999999999999998887765 45 Q ss_pred EEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHH Q lcl|Aclame:pro 148 SIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQV 225 (409) Q Consensus 148 ~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 225 (409) .++..+|....++++||+|+|+++ .++++|+||+.++..++.++.++++++...+.++ ++++++.++.+++++.+++ T Consensus 158 ~~~~~~g~~~~~~~~dIih~r~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~ 236 (437) T protein:vir:10 158 TYRNVDGTVSTLAEDDVFHVRGFS-LDGLMGLTPIQYAREVLGNSTAANKTSASVFRNGLRPSGVLSTDQILQKEKRAEI 236 (437) T ss_pred EEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEcCCCCCHHHHHHH Confidence 566667888899999999999875 5789999999999999999999999998877664 6788999999999999999 Q ss_pred HHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCc--cccHHHHHHHH Q lcl|Aclame:pro 226 LEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTN--FAKNEELNRFY 300 (409) Q Consensus 226 ~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~--~~~~e~~~~~~ 300 (409) +++|++.++ |+|+++|+++|++|+++++++.|+||+|.+++++++||++|||||.+||..+.++ ++|.|++.+.| T Consensus 237 ~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f 316 (437) T protein:vir:10 237 RTDLAEQFGGAMQAGKTMVLEAGMKYQAITMNPGDVQLLETRAFNIEEICRWYRVPPFMVGHSEKSTSWGTGIEQQTLGF 316 (437) T ss_pred HHHHHHHhcCccccCcceeccCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHH Confidence 999999884 5789999999999999999999999999999999999999999999999877664 48899999999 Q ss_pred HHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEE Q lcl|Aclame:pro 301 LQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKP 380 (409) Q Consensus 301 ~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~ 380 (409) +++||.|++++||++||++||++.++. +.+++||++++++.|.+++++++++++++|+||+||+|+++|+||+||||.+ T Consensus 317 ~~~tl~P~~~~ie~~l~~kll~~~e~~-~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gg~~~ 395 (437) T protein:vir:10 317 LTFTLRPWLTRIEQAARRSLLRPGERD-QFYAEFSVEGLLRADSAGRAAFYSTMTQNGLMTRDECRAKENLPPMGGNAAV 395 (437) T ss_pred HHHHHHHHHHHHHHHHHhhccCccccC-ceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcce Confidence 999999999999999999999987764 5789999999999999999999999999999999999999999999987764 Q ss_pred -eecccccchhccccccc------ccCCCCCCCCCC Q lcl|Aclame:pro 381 -LISGDLYPIDTPLELRK------SLKGGDKNVNES 409 (409) Q Consensus 381 -~~~~n~~~~~~~~~~~~------~~~gg~~n~~~~ 409 (409) ++++|++|++...+... +.++++.+++++ T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (437) T protein:vir:10 396 LTVQSALLPIDKLGEHTTATAAQDALKAWLYQEEKT 431 (437) T ss_pred EeecCcccchhhccCcCCCcchhccccccCCCCCCC Confidence 57999999876544322 335555555555 No 13 >protein:vir:81152 Length: 411 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285809;genbank:gi:148747730;genbank:GeneID:5247195 Probab=100.00 E-value=1.3e-93 Score=529.84 Aligned_cols=395 Identities=28% Similarity=0.411 Sum_probs=344.2 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-----c Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-----V 75 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-----~ 75 (409) |++++.+.+...+.. ......... +..+. ....++.+.++++++|++||++||++||++|++++++++ . T Consensus 1 MG~~~~~~~~~~~~~-~~~~~~~~~---~~~~~--g~~~~~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~ 74 (411) T protein:vir:81 1 MGWWSRLTRFFRPRN-ETVDMTNPL---LLQWL--GVDPDTPRNQLSEATYFACLKILSESLGKLPLKMYQKTERGIVKS 74 (411) T ss_pred CchHHHHHhhccCcc-cccccchHH---HHHHh--cCcccChhhhhccHHHHHHHHHHHHhHhhCceeEEEecCCceeee Confidence 999655544322211 001101111 11122 234567888999999999999999999999999998653 3 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce-----eEEEEE Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE-----LYYSIH 150 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~-----~~~~~~ 150 (409) ..|++.++|+.+||++||+++||+.++.+++++||||+++.|+ .|++.+|+|++|+.|++..++++.. .+|.+. T Consensus 75 ~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~-~g~~~~l~~l~~~~v~~~~~~~~~~~~~~~~~~~~~ 153 (411) T protein:vir:81 75 DREELYNLLKLRPNPYMTSSVFWSTVEMNRNHYGNAYVWCQYS-GPQLQALWILPSQYVTIVVDDRGLLGEKNAIWYRYN 153 (411) T ss_pred cccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEec-CCceEEEEEECCceEEEEEcCcccccccceEEEEEE Confidence 4688999999999999999999999999999999999999998 5899999999999999998876532 234443 Q ss_pred -cCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHH Q lcl|Aclame:pro 151 -AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLE 227 (409) Q Consensus 151 -~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 227 (409) ..+|..+.|+++||||+|.+++.++++|+||+.++..++.+..+++++....+.++ ++++++.++.+++++++++++ T Consensus 154 ~~~~g~~~~~~~~eiih~k~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~ 233 (411) T protein:vir:81 154 DPYDGKMYVFRNDEILHFKTSVTFDGITGLSVRDVLKHTVDGALESQKFMNNLYKTGLTGKAVLEYTGDLNQEARDRLVK 233 (411) T ss_pred ecCCceEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHH Confidence 34678889999999999987778899999999999999999999999998887664 678889999999999999999 Q ss_pred HHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHH Q lcl|Aclame:pro 228 DFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHT 304 (409) Q Consensus 228 ~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~ 304 (409) +|++.++ |+|+++|+++|++|+++++++.|+|++|.+++++++||++|||||.+||..+.++++|.|++.+.|++++ T Consensus 234 ~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~ 313 (411) T protein:vir:81 234 GFEQFANGSKNAGKIIPVPLGMKLVPLDIKLTDSQFFELKKYTALQIAAAFGIKPNQINDYEKSSYASAEAQNLAFYVDT 313 (411) T ss_pred HHHHHhcCccccCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCchhHHHHHHHHHHHH Confidence 9999885 5678999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecc Q lcl|Aclame:pro 305 LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG 384 (409) Q Consensus 305 l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~ 384 (409) |.|++++||++||++||++.++..+.+++||++++++.|.+++++++.+++++|++|+||+|+++|+||+||||++++++ T Consensus 314 l~P~~~~ie~~l~~~ll~~~~~~~~~~~~fd~~~ll~~d~~~~~~~~~~~~~~g~~t~NE~R~~~gl~p~~ggD~~~~~~ 393 (411) T protein:vir:81 314 LLYVLKQYEEEITYKILSNDLISQGHYFKFNVNVILRADIKTQMDSLSTAVQNGIMTPNEARDYLDMPADDYGNNLMANG 393 (411) T ss_pred HHHHHHHHHHHHHhhcCChhhcCCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecc Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999 Q ss_pred cccchhcccccccccCCCCC Q lcl|Aclame:pro 385 DLYPIDTPLELRKSLKGGDK 404 (409) Q Consensus 385 n~~~~~~~~~~~~~~~gg~~ 404 (409) |++|++...+. ..||||. T Consensus 394 n~~pl~~~~~~--~~kgGd~ 411 (411) T protein:vir:81 394 NYIPLSMLGAN--YGKGGDS 411 (411) T ss_pred Cccchhhhhhh--hccCCCC Confidence 99999886653 4578777 No 14 >protein:vir:4509 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599035;genbank:gi:19548993;genbank:GeneID:935206 Probab=100.00 E-value=8e-93 Score=525.48 Aligned_cols=397 Identities=20% Similarity=0.285 Sum_probs=338.1 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-----c Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-----V 75 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-----~ 75 (409) |.|.++|.|.........+ .. ....+ .....++..|+.+.++++++|++||++||++||++|++++++++ . T Consensus 17 ~~~~~lf~~~~~~~~~~~~--~~-~~~~~-~~~~~~~~~vs~~~al~~~~v~~cv~~Ia~~iA~lp~~v~~~~~~~~~~~ 92 (424) T protein:vir:45 17 VLLDALFRSKSLENPSTPI--TG-DAVDT-DGLFRADVYVSPETAMKLAAVYSCIYVLSSSLAQMPLHVMRRHKGKVEPA 92 (424) T ss_pred HHHHhhccccCCCCCcccc--ch-hhhhh-hccccCCceechHHhhccHHHHHHHHHHHHHHhhCceEEEEecCCceeec Confidence 8888888764221111111 11 11111 11233456789999999999999999999999999999998543 3 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCe Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGN 155 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~ 155 (409) .+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++++|+|++|+.|++..+. ....|.+....| T Consensus 93 ~~~~l~~lL~~~PN~~~t~~~f~~~~v~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~i~~~~--~~~~y~~~~~~~- 169 (424) T protein:vir:45 93 RDHPAFYLVHDEPNTWQTSYKWRELKQRHILGWGNGYTWVKRNRRGEVISLDCCMPWETTLMNTG--GRYTYGLYNEYG- 169 (424) T ss_pred ccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEEcC--CeEEEEEEecCc- Confidence 46889999999999999999999999999999999999999999999999999999999987654 334455554444 Q ss_pred EEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 156 KLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 156 ~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (409) ...+++++|||+|++++ ++.+|+||+..+...+.++.++++++...+.++ ++++++.++.+++++.+++++.|++.+ T Consensus 170 ~~~~~~~eVih~r~~~~-d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~ 248 (424) T protein:vir:45 170 AFAISPDDMIHIRALGN-NQKMGLSPIMQHAETIGMGMSGQKYTESFFSGNARPAGIVSVKSGLNKESWGWLKDQWQKAS 248 (424) T ss_pred eEEECcccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHh Confidence 56799999999998764 789999999999999999999999988777664 678888999999999999999999887 Q ss_pred c----CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 E----ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIV 309 (409) Q Consensus 234 ~----~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~ 309 (409) + ++|+++|+++|++|+++++++.|+||+|.+++++++||++|||||.+||..++++++|.|++.+.|++++|.|++ T Consensus 249 ~g~~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~eq~~~~f~~~tL~P~~ 328 (424) T protein:vir:45 249 QALRRQENKTMLLPADLDYKALTVSPVDAQIIDMMKLNRSMIAGIFNIPAHMINDLEKATFSNISAQAIQFVRYTMMPWV 328 (424) T ss_pred ccccccCCceeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHHHH Confidence 4 568999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccch Q lcl|Aclame:pro 310 KQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPI 389 (409) Q Consensus 310 ~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~ 389 (409) ++||++||++||++.++..+++++||++++++.|.+++++.+.+++++|+||+||+|+++|+||+||||++++|+|+.+. T Consensus 329 ~~ie~~ln~kLl~~~e~~~g~~i~fd~~~llr~d~~~r~~~~~~~~~~g~~T~NE~R~~~gl~pi~ggD~~~~~~n~~~~ 408 (424) T protein:vir:45 329 TNWEQELNRRLFTRAELAAGYYVRFNLTGLLRGTPQERAQFYHFAITDGWMSRNEARAFEDMNPVEGLDEMLVSVNAANP 408 (424) T ss_pred HHHHHHHHHhcCChhhhcCCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccccccc Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999875 Q ss_pred hcccccccccCCCCCCCCC Q lcl|Aclame:pro 390 DTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 390 ~~~~~~~~~~~gg~~n~~~ 408 (409) ..... ..+.++..++| T Consensus 409 ~~~~~---~~~~~~~~~~~ 424 (424) T protein:vir:45 409 AGDFK---PPKNDEGKTNE 424 (424) T ss_pred ccccC---CCCCCCCCCCC Confidence 43222 22223333333 No 15 >protein:vir:483 Length: 413 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543090;swissprot:trembl:q8w629;genbank:gi:18249902;uniprot:Q8W629;genbank:GeneID:929685 Probab=100.00 E-value=2.6e-92 Score=522.67 Aligned_cols=399 Identities=18% Similarity=0.310 Sum_probs=348.3 Q ss_pred CcchhhhhhhhhhhhcccccCccccccccc--ccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc---- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFS--PWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK---- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~---- 74 (409) |.|.+||.|.+...... ...+.++. .+.+.++..|+.+.|+++++|++||++||+++|++|++++++++ T Consensus 1 ~~f~~~f~r~~~~~~~~-----~~~~~~~~~~~~~~~~g~~v~~~~~l~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~ 75 (413) T protein:vir:48 1 MFFSGLFQRKSDAPVTT-----PAELAEAIGLSYDTYTGKRISSQRAMRLTAVYSCVRVLAESVGMLPCSLYKISGTLKT 75 (413) T ss_pred CccchhhccCccCCccc-----hHHHHHhhhcCcccccCceechhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcce Confidence 99999999954432211 11111211 12234566788999999999999999999999999999998653 Q ss_pred -cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCC Q lcl|Aclame:pro 75 -VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT 153 (409) Q Consensus 75 -~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~ 153 (409) ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+ .|++.+|||++|++|++..+.++.. .|.+.... T Consensus 76 ~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~-~y~~~~~~ 153 (413) T protein:vir:48 76 RVVDERLHKLVSAKPNGYMTPQEFWELVIVCLCLRGNFYAYKVKA-LGEVVELLPIDPGCVEPKLNSQWQP-VYQVTFPD 153 (413) T ss_pred eecccHHHHHHHhhccCCCCHHHHHHHHHHHHhhcCceEEEEEeC-CCcEEEEEEEcCceEEEEEcCCceE-EEEEEecC Confidence 34688999999999999999999999999999999999999987 5899999999999999998877654 55666778 Q ss_pred CeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHH Q lcl|Aclame:pro 154 GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQ 231 (409) Q Consensus 154 g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (409) |....+++++|||+++++ .++.+|+||+..+..++.++.++++++...+.++ ++++++.++.+++++.+++++.|++ T Consensus 154 g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~~~~e~~~~~~~~~~~ 232 (413) T protein:vir:48 154 GSVDVLTQDEIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFGNGAVTSGVLRTEQKLTPDAYERLKKDFEE 232 (413) T ss_pred ceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHH Confidence 888899999999999875 4778999999999999999999999988877654 6788999999999999999999999 Q ss_pred Hhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 YYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPI 308 (409) Q Consensus 232 ~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~ 308 (409) .++ |+|+++|+++|++|++++++++|+|+.|.+++++++||++|||||.+|+..+.++++|.|++...|++++|.|+ T Consensus 233 ~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~n~e~~~~~f~~~~i~P~ 312 (413) T protein:vir:48 233 RHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVPY 312 (413) T ss_pred HhcCccccCcceecCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCCcccHHHHHHHHHHHHHHHH Confidence 885 56889999999999999999999999999999999999999999999999888999999999999999999999 Q ss_pred HHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccc Q lcl|Aclame:pro 309 VKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYP 388 (409) Q Consensus 309 ~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~ 388 (409) +++||++||++|+++.++ .+.+++||++++++.|.+++++++++++++|++|+||+|+++|+||+||||++++|+|+.+ T Consensus 313 ~~~ie~~l~~~L~~~~~~-~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ggD~~~~~~n~~~ 391 (413) T protein:vir:48 313 LTRIEQRINTGLVRESKQ-GKFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMTT 391 (413) T ss_pred HHHHHHHHHhhccCcccc-CCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeccccccc Confidence 999999999999998776 4889999999999999999999999999999999999999999999999999999999999 Q ss_pred hhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 389 IDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 389 ~~~~~~~~~~~~gg~~n~~~~ 409 (409) ++...+... .++++.+.+++ T Consensus 392 ~~~~~~~~~-~~~~~~~~~~~ 411 (413) T protein:vir:48 392 SPSAGDDNG-KKKESGDADKT 411 (413) T ss_pred cccccccCC-CCCCCCCcccc Confidence 877655432 23333444444 No 16 >protein:vir:9359 Length: 348 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803337;genbank:gi:29028648;genbank:GeneID:1258089 Probab=100.00 E-value=1.7e-92 Score=523.70 Aligned_cols=348 Identities=100% Similarity=1.426 Sum_probs=339.1 Q ss_pred hccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC Q lcl|Aclame:pro 62 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 141 (409) Q Consensus 62 ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~ 141 (409) ||+|||+++++++.++|++.++|+.+||++||+++||+.++.+++++||||++++|+..|++.+|+||+|.+|++..+.+ T Consensus 1 ia~lp~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~l~~~~v~~~~~~~ 80 (348) T protein:vir:93 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (348) T ss_pred CcccceEeEecCcCcccHHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCCceEEEEeCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHH Q lcl|Aclame:pro 142 SRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEK 221 (409) Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (409) +...+|.+....|..+.|+++||||+|++++.++++|+||+..+..++.++.+++++++..++++++++++.++.+++++ T Consensus 81 ~~~~~y~~~~~~g~~~~~~~~eiih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~ 160 (348) T protein:vir:93 81 SRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEK 160 (348) T ss_pred CcEEEEEEEcCCCeEEEEccccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCCCCHHH Confidence 98888999999999999999999999998888999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHH Q lcl|Aclame:pro 222 RQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYL 301 (409) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~ 301 (409) +++++++|++.++|+++++++++|++|++++++++|+||+|.+++++++||++|||||.+|+..+++++++.|++.+.|+ T Consensus 161 ~~~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~~~~~~~~~e~~~~~~~ 240 (348) T protein:vir:93 161 RQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYL 240 (348) T ss_pred HHHHHHHHHHHhhcCCCeeecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEe Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPL 381 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~ 381 (409) .+||.|++++||++||++||++.++..+.+|+||.+++++.|.+++++++++++++|++|+||+|+++|+||+||||+++ T Consensus 241 ~~~l~P~~~~ie~~l~~~l~~~~~~~~g~~i~fd~~~l~~~d~~~~a~~~~~~~~~G~~T~NE~R~~~g~~p~~ggD~~~ 320 (348) T protein:vir:93 241 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPL 320 (348) T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccCcceEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCcCeEe Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999 Q ss_pred ecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++|++|++.+.+.++..+|||+|+++| T Consensus 321 ~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 348 (348) T protein:vir:93 321 ISGDLYPIDTPLELRKSLKGGDKNVNES 348 (348) T ss_pred ecccccccccchhhcccccCCCCCcCCC Confidence 9999999999999988899999999999 No 17 >protein:vir:1884 Length: 424 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037664;genbank:gi:9634122;genbank:GeneID:1262519 Probab=100.00 E-value=6.2e-92 Score=520.61 Aligned_cols=398 Identities=20% Similarity=0.287 Sum_probs=338.3 Q ss_pred Ccc---hhhhhhhhhhhhcccccCcc--cccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc- Q lcl|Aclame:pro 1 MAK---ENIVTRIKKKLIDNWIDQSA--SKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK- 74 (409) Q Consensus 1 M~~---~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 74 (409) |-. -+||+|+++.+.......+. .....+......++..|+.+.|+++++|++||++||++||++||++++.++ T Consensus 8 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~~~~~~~~ 87 (424) T protein:vir:18 8 IDLRTNNGWWARLQSWFVGGRLVTPNQGSQTGPVSAHGHLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQN 87 (424) T ss_pred EeecCCCchHHHHHhhhcccccccccccccccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeecC Confidence 555 37899988766433222111 111112222233456789999999999999999999999999999997542 Q ss_pred ------cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEE Q lcl|Aclame:pro 75 ------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) Q Consensus 75 ------~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~ 148 (409) ...|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|..|++..+. ....|. T Consensus 88 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~pl~~~~V~v~~~~--~~~~y~ 165 (424) T protein:vir:18 88 DNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVG--KKVVYR 165 (424) T ss_pred CceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcC--CeEEEE Confidence 236889999999999999999999999999999999999999999999999999999999987764 344555 Q ss_pred EEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCC-cCCHHHHHHH Q lcl|Aclame:pro 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGS-NVSTEKRQQV 225 (409) Q Consensus 149 ~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~ 225 (409) +.. +|+.+.|+++||||+|+++. ++.+|+||+..+..++.++.++++++.+++.++ ++++++.+. .+++++++++ T Consensus 166 ~~~-~g~~~~~~~~eIih~r~~~~-dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~ 243 (424) T protein:vir:18 166 YQR-DSEYADFSQKEIFHLKGFGF-TGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQV 243 (424) T ss_pred EEe-CCeEEEeccccEEEecCcCC-CCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCcCCCHHHHHHH Confidence 543 46778999999999998764 778999999999999999999999998877665 566776654 5899999999 Q ss_pred HHHHHHHhc--CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc--ccHHHHHHHHH Q lcl|Aclame:pro 226 LEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF--AKNEELNRFYL 301 (409) Q Consensus 226 ~~~~~~~~~--~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~--~~~e~~~~~~~ 301 (409) +++|++.++ ++|+++|+++|++|++++++++|+||+|.+++++++||++|||||++||..+.+++ ++.|++...|+ T Consensus 244 ~~~~~~~~~g~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~ 323 (424) T protein:vir:18 244 EENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFL 323 (424) T ss_pred HHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHH Confidence 999998885 57899999999999999999999999999999999999999999999998877664 89999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEe Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPL 381 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~ 381 (409) ++||.|++++||++||++||++.++ .+.+++||++++++.|.+++++.+.+++++|+||+||+|+++|+||+||||+++ T Consensus 324 ~~tl~P~~~~ie~~l~~~L~~~~~~-~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGD~~~ 402 (424) T protein:vir:18 324 QYTLQPYISRWENSIQRWLIPAKDV-GRIHAEHNLDGLLRGDSASRAAFMKAMGEAGLRTINEMRRTDNLPPLPGGDVAM 402 (424) T ss_pred HHHHHHHHHHHHHHHHhhcCCcccc-CCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee Confidence 9999999999999999999999876 478999999999999999999999999999999999999999999999999999 Q ss_pred ecccccchhcccccccccCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~ 407 (409) +++|++|++...+.. + ..+|+. T Consensus 403 ~~~n~~~l~~~~~~~---~-p~~~ga 424 (424) T protein:vir:18 403 RQSQYVPITDLGTNK---E-PRNNGA 424 (424) T ss_pred eccCccchHhhhccC---C-CccCCC Confidence 999999998754321 1 122222 No 18 >protein:vir:100249 Length: 431 # NCBI annotation: gp78 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1619 # MgeName: Bcep176 # Cross-refs: genbank:acc:YP_355414;genbank:gi:77864704;genbank:GeneID:3725971 Probab=100.00 E-value=3.2e-92 Score=522.18 Aligned_cols=395 Identities=17% Similarity=0.231 Sum_probs=339.6 Q ss_pred Ccchhhhhhhhhhhhcc--cc--------------cCcccc-----cccccccCCCCccccchhHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN--WI--------------DQSASK-----LYDFSPWKNKSFWGVINNTLETNETIFSAITKLS 59 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~--~~--------------~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia 59 (409) |+++++|.|.+...... .+ +..... +..|......++..|+.+.++++++|++||++|| T Consensus 1 Mgl~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~ci~~Ia 80 (431) T protein:vir:10 1 MGLFDFIRREKQPEAQARPHVEPSFQASTPTTSIPGETFEGLDDPRLKEYIRRGELNGGTGRETRALRNMAVLRCVTLIS 80 (431) T ss_pred CcchhhhhcCcccccccccccccccccccccccccccccccccchHHHHhhccCccCcceechhhhhccHHHHHHHHHHH Confidence 99999998865432111 10 000000 1112222233456678899999999999999999 Q ss_pred HhhccCceeEeeccc----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceE Q lcl|Aclame:pro 60 NSMASLPLKMYEDYK----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVE 135 (409) Q Consensus 60 ~~ia~lp~~~~~~~~----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~ 135 (409) ++||++|++++++++ ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+. |.+++|+|++|.+|+ T Consensus 81 ~~iA~lp~~v~~~~~~~~~~~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~-g~~~~L~pl~~~~v~ 159 (431) T protein:vir:10 81 GTIGMLPMNLISSDDSKQVLTDDPAHRLLKYKPNDWQTPMEFKSLMQLRALLDGESMARIVWSG-NRPIRLIPMDRGSAK 159 (431) T ss_pred HhhccCceEEEEecCceeeeccchHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcC-CceEEEEEEcCceeE Confidence 999999999998753 345889999999999999999999999999999999999999985 899999999999999 Q ss_pred EEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEec Q lcl|Aclame:pro 136 MLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKY 213 (409) Q Consensus 136 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~ 213 (409) +..+.++.+ +|.++...|..+.|+++||+|+|+++ .++++|+||+..+...+.++.+++++..+.+.++ ++++++. T Consensus 160 ~~~~~~~~~-~y~~~~~~g~~~~~~~~dViHir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~ 237 (431) T protein:vir:10 160 GRLTSTWQI-VYDYTTPTGDKIELPAREVFHLRDLS-IDGVSGVSRVKLSGNALELAEQAERAASRTFRTGVMAGGAIEV 237 (431) T ss_pred EEEcCCCeE-EEEEEeCCceEEEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEec Confidence 988877665 56667778888999999999999875 5779999999999999999999999998877664 6788999 Q ss_pred CCcCCHHHHHHHHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc Q lcl|Aclame:pro 214 GSNVSTEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF 290 (409) Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~ 290 (409) ++.+++++.++++++|++.++ |+|+++|+++|++|++++++++|+|++|.+++++++||++|||||++|+..+++++ T Consensus 238 ~~~ls~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~r~~~~~~Ia~~fgVPp~~lg~~~~~t~ 317 (431) T protein:vir:10 238 PKELSDNAYGRMKASVQENHTGSENAGSWMLLEEGATAKQFSNTAASAQQIENRNHQIEEVARMYGVPRPLLMMDDTSWG 317 (431) T ss_pred CCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCCcc Confidence 999999999999999999885 57899999999999999999999999999999999999999999999999999999 Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcC----CcCHHHHH Q lcl|Aclame:pro 291 AKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSG----YYTINDIR 366 (409) Q Consensus 291 ~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g----~~T~NE~R 366 (409) +|.|++.+.|+++||.|++++||++||++||++.++ .+++++||++++++.|.+++++.+.+++..| +||+||+| T Consensus 318 sn~eq~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~~-~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~~g~lT~NE~R 396 (431) T protein:vir:10 318 SGIEQLAIFFIQYGLSHWFVSWEQAAARAFLPEKML-GQRQFKFNEGALLRGTLNDQAAFFSKALGAGGQSPWMKQNEVR 396 (431) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhc-CCceEEEechhhhccCHHHHHHHHHHHHhcccccCccCHHHHH Confidence 999999999999999999999999999999998665 4789999999999999999999999998765 49999999 Q ss_pred HHhCCCCCCC--CCEEeecccccchhccccccccc Q lcl|Aclame:pro 367 EWEDLPPVEG--GDKPLISGDLYPIDTPLELRKSL 399 (409) Q Consensus 367 ~~~g~~p~~~--gd~~~~~~n~~~~~~~~~~~~~~ 399 (409) +++|+||+|+ ||++++|.|+.+.+...+..... T Consensus 397 ~~~gl~p~~~~~gD~~~~p~n~~~~~~~~~~p~~~ 431 (431) T protein:vir:10 397 EMLDLPRADDPVADQLRNPMTQKQKGSGDEPPATT 431 (431) T ss_pred HHhCCCCCCCccccceecccccccCCCCCCCCCCC Confidence 9999999965 99999999987765433321111 No 19 >protein:vir:4454 Length: 414 # NCBI annotation: Portal Protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700377;genbank:gi:23505449;genbank:GeneID:955656 Probab=100.00 E-value=8.9e-92 Score=519.77 Aligned_cols=399 Identities=19% Similarity=0.318 Sum_probs=342.5 Q ss_pred Ccchh-hhhhhhhhhhcccccCcccccccc--cccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc--- Q lcl|Aclame:pro 1 MAKEN-IVTRIKKKLIDNWIDQSASKLYDF--SPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--- 74 (409) Q Consensus 1 M~~~~-~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 74 (409) |++++ ||.|..+..... +. ....+ ..+.+.++..|+.+.++++++|++||++||++||++|+++++.++ T Consensus 1 Mg~f~~lf~r~~~~~~~~----~~-~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~ 75 (414) T protein:vir:44 1 MVFFSGLFQRKSDAPVTT----PA-ELADAIGLSYDTYTGKQISSQRAMRLTAVFSCVRVLAESVGMLPCNLYHLNGSLK 75 (414) T ss_pred CchhhhhhccCccCcccc----hh-hHhHhhccCccccCCceechhhhhccHHHHHHHHHHHHHhccCceEEEEecCCce Confidence 99975 556543321111 11 11111 122344556778899999999999999999999999999998553 Q ss_pred --cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcC Q lcl|Aclame:pro 75 --VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA 152 (409) Q Consensus 75 --~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~ 152 (409) ...|++.++|+.+||++||+++||+.++.+++++||||+++.++ .|++.+|+||+|..|++..+.++.. .|.+... T Consensus 76 ~~~~~~~~~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gna~~~i~~~-~g~~~~L~~l~~~~v~~~~~~~~~~-~y~~~~~ 153 (414) T protein:vir:44 76 QRATGERLHKLISTHPNGYMTPQEFWELVVTCLCLRGNFYAYKVKA-FGEVAELLPVDPGCVVPKLNSSWEP-VYQVTFP 153 (414) T ss_pred eecccchHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCceEEEEECCCCcE-EEEEEec Confidence 34588899999999999999999999999999999999999887 5999999999999999998877654 5566677 Q ss_pred CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHH Q lcl|Aclame:pro 153 TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFK 230 (409) Q Consensus 153 ~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 230 (409) +|....|++++|||+++++ .++++|+||+..+..++.++.+++++...++.++ ++++++.++.+++++.++++++|+ T Consensus 154 ~g~~~~~~~~evih~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~ 232 (414) T protein:vir:44 154 DGSTDVLSQEDIWHVRTLT-LDGLVGLNPIAYAREAISLAAATEEHGARLFSNGAVTSGVLRTEQTLSDQAYERLKKDFE 232 (414) T ss_pred CceEEEEccccEEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCHHHHHHHHHHHH Confidence 8888999999999999874 5789999999999999999999999998877664 678899999999999999999999 Q ss_pred HHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 231 QYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLP 307 (409) Q Consensus 231 ~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P 307 (409) +.++ |+|+++|+++|++|+++++++.|+||+|.+++++++||++|||||.+|+..++++++|.|++.+.|++++|.| T Consensus 233 ~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~~~~~~t~~n~e~~~~~~~~~~l~P 312 (414) T protein:vir:44 233 ERHTGLGNAHRPMILEMGLDWKSMALNAEDSQFLETRKFQLEEICRLFRVPLHMVQNTDRATFNNIEELGLGFINYSLVP 312 (414) T ss_pred HHhcCccccCcceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHHHHHHHH Confidence 9885 5678999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccccc Q lcl|Aclame:pro 308 IVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLY 387 (409) Q Consensus 308 ~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~ 387 (409) ++++||++||++||++.++ .+.+++||++++++.|.+++++.+++++++|+||+||+|+++|+||+||||++++|+|+. T Consensus 313 ~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~ggD~~~~~~n~~ 391 (414) T protein:vir:44 313 YLTRIEQRINTGLVRKSKQ-GVFYAKFNAGALLRGDMKSRFEAYATGINWGIYSPNDCRDLEDMNPRPGGDVYLTPMNMT 391 (414) T ss_pred HHHHHHHHHHhhcCCcccc-CceEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeccccccc Confidence 9999999999999998876 478899999999999999999999999999999999999999999999999999999997 Q ss_pred chhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 388 PIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 388 ~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +...... +...++++.+.+++ T Consensus 392 ~~~~~~~-~~~~~~~~~~~d~~ 412 (414) T protein:vir:44 392 TKPSDGS-KAGKQKDNANADET 412 (414) T ss_pred ccCCccc-cCCCCCCCCCCCCC Confidence 6654332 12223344444444 No 20 >protein:vir:105064 Length: 421 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006584;genbank:gi:46402090;genbank:GeneID:2777930 Probab=100.00 E-value=5.7e-92 Score=520.81 Aligned_cols=399 Identities=22% Similarity=0.324 Sum_probs=339.3 Q ss_pred CcchhhhhhhhhhhhcccccCccc-ccc-cccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc---- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSAS-KLY-DFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK---- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~---- 74 (409) |.++.+|.+.+..+... +.+ .+. .+....+.++..|+.+.++++++||+||++||++||++||+++++++ T Consensus 1 m~~~~~~~~~~~~~s~~----~~w~~~~~~~~~~~~~~g~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~g~~ 76 (421) T protein:vir:10 1 MFIPQMFEGKKRSVSGG----GFWEAMLGGVRSSHSKAGVMITPETALALSAVRACVTLLAESVAQLPVELYRRDKNGGR 76 (421) T ss_pred CCCcchhcccccccCcc----hhhHHHhhhhccCcccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCce Confidence 99999988765443211 111 000 11122334567789999999999999999999999999999997542 Q ss_pred --cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcC Q lcl|Aclame:pro 75 --VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA 152 (409) Q Consensus 75 --~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~ 152 (409) ..+|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|+|.+||||+|..|++..+.+|...+ .+. . T Consensus 77 ~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~l~~~~v~v~~~~~g~~~y-~~~-~ 154 (421) T protein:vir:10 77 QRATDHPIYDLIHSQPNKKDTSFEYFEQQQGLLGLEGNCYSIIDRDGKGYPKELIPINPKKVIVLKGPDGMPYY-EIP-E 154 (421) T ss_pred eecccchHHHHHhhcccCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEecCceEEEEECCCceEEE-EEc-C Confidence 346889999999999999999999999999999999999999999999999999999999999988876543 332 3 Q ss_pred CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCc----CCHHHHHHHH Q lcl|Aclame:pro 153 TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSN----VSTEKRQQVL 226 (409) Q Consensus 153 ~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~ 226 (409) .| ..+++++|+|+++++ .++++|+||+..+..++.++.+++++....+.++ ++++++.++. ++++++++++ T Consensus 155 ~g--~~~~~~eiih~~~~~-~d~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~e~~~~~~ 231 (421) T protein:vir:10 155 IG--ETLPMRMMHHVKVFS-LDGYIGSSPIQTNADVLGLNLAVEEHASAVFRRGATMSGVIERPKEAPAIKSQEKIDQLL 231 (421) T ss_pred CC--cEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCccCccCCHHHHHHHH Confidence 33 368999999999865 5789999999999999999999999998877664 5667776654 4999999999 Q ss_pred HHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 227 EDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 227 ~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) ++|++.++ ++++++|+++|++|++++++++|+||+|.+++++++||++|||||.+|+..+.++++|.|++.+.|+++ T Consensus 232 ~~~~~~~~g~~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~ 311 (421) T protein:vir:10 232 AKWTDRYSGINNMFSVALLQEGMSYKQMSQDNEKAQLLQSRQWGVEEVCRLYKIPPHMVQMLAKATNNNIEHQGLQFVMY 311 (421) T ss_pred HHHHHHhcCccccCcceecCCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCcCCccccHHHHHHHHHHH Confidence 99999985 567899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeec Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLIS 383 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~ 383 (409) ||.|++++||++||++||++.++ .+.+++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||++++| T Consensus 312 tl~P~~~~ie~~ln~kL~~~~~~-~~~~v~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~ 390 (421) T protein:vir:10 312 TLLAWLKRHEGALQRDLLLPSER-RDLYIEFNVSGLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLPPIAGGDKYLTP 390 (421) T ss_pred HHHHHHHHHHHHHhhhccCcccc-CCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Confidence 99999999999999999998775 58899999999999999999999999999999999999999999999999999999 Q ss_pred ccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 384 GDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 384 ~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +|+.+++.+...+.......+.+.|. T Consensus 391 ~n~~~~~~~~~~~~~~~~~~~~e~d~ 416 (421) T protein:vir:10 391 LNMVDSAQIIPGDKKPTAQQMAEIDT 416 (421) T ss_pred cccccccccccCCCCcccccCccccc Confidence 99998877644332211111111111 No 21 >protein:vir:189 Length: 424 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037699;genbank:gi:9634156;genbank:GeneID:1262529 Probab=100.00 E-value=2.1e-91 Score=517.67 Aligned_cols=398 Identities=20% Similarity=0.287 Sum_probs=335.4 Q ss_pred Ccc---hhhhhhhhhhhhcccccCcc--cccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc Q lcl|Aclame:pro 1 MAK---ENIVTRIKKKLIDNWIDQSA--SKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) Q Consensus 1 M~~---~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 75 (409) |-. .+||+|+++.+.......+. .....++.....++..|+.+.++++++|++||++||++||++|+++|+..+. T Consensus 8 ~~~~~~~g~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~cv~~Ia~~iA~lp~~vy~~~~~ 87 (424) T protein:vir:18 8 IDLRTNNGWWARLKSWFVGGRLVTPNQGSQTGPVSAHGYLGDSSINDERILQISTVWRCVSLISTLTACLPLDVFETDQN 87 (424) T ss_pred cccCCCCchHHHHHhhccccccccccchhhccccccccccccccccHHHhhccHHHHHHHHHHHHhhccCceEEEEeccC Confidence 332 58888887754332211111 1111111111223456889999999999999999999999999999975421 Q ss_pred -------ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEE Q lcl|Aclame:pro 76 -------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) Q Consensus 76 -------~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~ 148 (409) .+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|.+|++..+. ....|. T Consensus 88 ~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~l~~~~v~v~~~~--~~~~y~ 165 (424) T protein:vir:18 88 DNRKKVDLSNPLARLLRYSPNQYMTAQEFREAMTMQLCFYGNAYALVDRNSAGDVISLLPLQSANMDVKLVG--KKVVYR 165 (424) T ss_pred CceeeeccccHHHHHHhhccCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCcceEEEEcC--CeEEEE Confidence 36889999999999999999999999999999999999999999999999999999999987754 344455 Q ss_pred EEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCC-cCCHHHHHHH Q lcl|Aclame:pro 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGS-NVSTEKRQQV 225 (409) Q Consensus 149 ~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~ 225 (409) ++ .+|..+.|+++||||+|+++ .++.+|+||+..+...+.++.++++++.+++.++ ++++++.+. .+++++++++ T Consensus 166 ~~-~~g~~~~~~~~eVihir~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~ 243 (424) T protein:vir:18 166 YQ-RDSEYADFSQKEIFHLKGFG-FTGLVGLSPIAFACKSAGVAVAMEDQQRDFFANGAKSPQILSTGEKVLTEQQRSQV 243 (424) T ss_pred EE-eCCeEEEeccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCcCCCHHHHHHH Confidence 54 34677899999999999876 4778999999999999999999999998877664 566777655 5899999999 Q ss_pred HHHHHHHhc--CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc--ccHHHHHHHHH Q lcl|Aclame:pro 226 LEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF--AKNEELNRFYL 301 (409) Q Consensus 226 ~~~~~~~~~--~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~--~~~e~~~~~~~ 301 (409) +++|++.++ ++|+++|+++|++|+++++++.|+||+|.+++++++||++|||||++||..+.+++ ++.|++...|+ T Consensus 244 ~~~~~~~~~~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~sn~eq~~~~f~ 323 (424) T protein:vir:18 244 EENFKEIAGGPVKKRLWILEAGFSTSAIGVTPQDAEMMASRKFQVSELARFFGVPPHLVGDVEKSTSWGSGIEQQNLGFL 323 (424) T ss_pred HHHHHHHhCCcccCCceeccCCceEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCCCCCcccccccHHHHHHHHH Confidence 999998875 57889999999999999999999999999999999999999999999998877665 88999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEe Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPL 381 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~ 381 (409) ++||.|++++||++||++||++.++. +.+++||++++++.|.+++++.+.+++++|+||+||+|+++|+||+||||+++ T Consensus 324 ~~tl~P~~~~ie~~ln~~L~~~~~~~-~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~ 402 (424) T protein:vir:18 324 QYTLQPYISRWENSIQRWLIPSKDVG-RLHAEHNLDGLLRGDSASRAAFMKAMGESGLRTINEMRRTDNMPPLPGGDVAM 402 (424) T ss_pred HHHHHHHHHHHHHHHHhhcCCccccC-CeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeee Confidence 99999999999999999999998774 78999999999999999999999999999999999999999999999999999 Q ss_pred ecccccchhcccccccccCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~ 407 (409) +++|++|++...+... ..+|+. T Consensus 403 ~~~n~~~l~~~~~~~~----~~~n~a 424 (424) T protein:vir:18 403 RQAQYVPITDLGTNKE----PRNNGA 424 (424) T ss_pred eccCccchhhhhccCC----ccccCC Confidence 9999999987543211 111222 No 22 >protein:vir:93610 Length: 454 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449295;genbank:gi:157166043;interpro:IPR006427;interpro:IPR006944;uniprot:Q6H9U6;genbank:GeneID:5580432 Probab=100.00 E-value=3e-91 Score=516.86 Aligned_cols=403 Identities=17% Similarity=0.233 Sum_probs=336.2 Q ss_pred chhhhhhhhhhhhc-ccccCccc-ccccc----cccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-- Q lcl|Aclame:pro 3 KENIVTRIKKKLID-NWIDQSAS-KLYDF----SPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-- 74 (409) Q Consensus 3 ~~~~~~r~~~~~~~-~~~~~~~~-~~~~~----~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 74 (409) .+++|.|.+..... ..+....+ ..+.+ ....+.++..|+.+.++++++|++||++||++||++||+++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~v~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~g 80 (454) T protein:vir:93 1 MWNLLRRTRKNQKSGRDVREAGWTSLFQAVAEPFAGAWQQGVKADPEAVLSFHAVFACISLISQDIAKMRLRLMQTDAQG 80 (454) T ss_pred CCCccccCcccccccccccchhhhhhhhhhhhhhcchhhcCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEeccCC Confidence 56667764432211 11111111 11111 111334567789999999999999999999999999999998653 Q ss_pred ---cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc Q lcl|Aclame:pro 75 ---VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) Q Consensus 75 ---~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~ 151 (409) ...++..++|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|++|++..+.+|...+.+... T Consensus 81 ~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~y~~~~~ 160 (454) T protein:vir:93 81 IRRETRRGDIARLCRRPNAQQNRIQFFELWLNAKLRHGNTVVLKIRNARGQIKELRILDWNRVEPLVADDGEVFYRITPD 160 (454) T ss_pred ccchhhhHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEECCCCcEEEEEEEcCcceEEEEcCCCcEEEEEEec Confidence 23455667888899999999999999999999999999999999999999999999999999998888765433222 Q ss_pred C---CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHH Q lcl|Aclame:pro 152 A---TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVL 226 (409) Q Consensus 152 ~---~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (409) . .+..+.++++||||++...+.++++|+||+..+...+.++.++++++.+.+.++ ++++++.++.+++++.++++ T Consensus 161 ~~~~~~~~~~~~~~eViH~k~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~ 240 (454) T protein:vir:93 161 RNCGITEAVTVPAREVIHDRFNCFFHPLIGLPPVYAAGLAATQGHHIQENSTSFFRNGGRPSGVIEIPGSITEENAKKLK 240 (454) T ss_pred cccccceeEEecCcceEEeccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEecCCCCCHHHHHHHH Confidence 2 245678999999999987778999999999999999999999999998887764 67888999999999999999 Q ss_pred HHHHHHhc--CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHH Q lcl|Aclame:pro 227 EDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHT 304 (409) Q Consensus 227 ~~~~~~~~--~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~ 304 (409) ++|++.++ |+|+++|+++|++|++++++++|+||+|.+++.+++||++|||||.+||..++++++|.|++.+.|++++ T Consensus 241 ~~~~~~~~g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~ 320 (454) T protein:vir:93 241 SNWDSGYTGENAGKTAILSNGAKYNPTTFSPVDSQTVEQLKMTAEIVCSVFRVPAYKIGVGQPPSSDNVEALEQQYYSQC 320 (454) T ss_pred HHHHHHhcccccCCceeccCCceEEEcccChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCCcchhHHHHHHHHHHHH Confidence 99999885 5789999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecc Q lcl|Aclame:pro 305 LLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG 384 (409) Q Consensus 305 l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~ 384 (409) |.|+++.||++||++|++. .+.+++||++++++.|.+++++.+.+++++|+||+||+|+++|+||+||||++++++ T Consensus 321 l~P~~~~ie~~ln~~L~~~----~~~~~~f~~~~ll~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~ggD~~~~~~ 396 (454) T protein:vir:93 321 LQTLIESIELLLDEALETG----ENESTEFDVTTLLRMDSERRMKTLGDAVKNTLLTPNEARKRENLPPLAGGDALYLQQ 396 (454) T ss_pred HHHHHHHHHHHHHHhhcCC----CCcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeeeecc Confidence 9999999999999999875 366899999999999999999999999999999999999999999999999999999 Q ss_pred cccchhcccccccccCC-----------CCCCCCCC Q lcl|Aclame:pro 385 DLYPIDTPLELRKSLKG-----------GDKNVNES 409 (409) Q Consensus 385 n~~~~~~~~~~~~~~~g-----------g~~n~~~~ 409 (409) |++|++.....+....+ .+..+.|+ T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 432 (454) T protein:vir:93 397 QNYSLEALSRRDAREDPFASSGKTASVPQAVAASDG 432 (454) T ss_pred CccchHhhhccCcccCCCCCCccCCCCCCCCCCCCC Confidence 99998765432211110 01111111 No 23 >protein:vir:5737 Length: 419 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892048;genbank:gi:33770511;goa:Q7Y412;interpro:IPR006427;interpro:IPR006944;uniprot:Q7Y412;genbank:GeneID:1732929;interpro:IPR010994 Probab=100.00 E-value=3.3e-91 Score=516.66 Aligned_cols=399 Identities=22% Similarity=0.305 Sum_probs=338.3 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc----- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV----- 75 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~----- 75 (409) |+++++|.+........|.. ....+......++..|+.+.++++++|++||++||++||++|++++++.+. T Consensus 1 m~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~~g~~~~ 76 (419) T protein:vir:57 1 MFIPQFWKGRPSENRVNWQV----VPGGMRSSSSQAGVIITPETALALSAVRACVTLLAESVAQLPCVLYRRTENGGREI 76 (419) T ss_pred CcchhhhccCCccccccccc----cccccccccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEEcCCCceec Confidence 99999987643322222211 111222334556678899999999999999999999999999999985532 Q ss_pred -ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCC Q lcl|Aclame:pro 76 -VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG 154 (409) Q Consensus 76 -~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g 154 (409) .+|++.++|+.+||++||+++||+.++.+++++||||++|+|+..|++.+|+|++|+.|++..+.++.. +|.+. ..| T Consensus 77 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~pl~~~~v~v~~~~~g~~-~y~~~-~~~ 154 (419) T protein:vir:57 77 AFDHPLHDLIRYQPNRKDTAFEYHEQTQGVLGLEGNSYSLIDRNGRGDITELIPINPHKVIVLKGPDGMP-YYDIP-SIG 154 (419) T ss_pred cccchHHHHHhhccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCcceEEEECCCceE-EEEEc-CCc Confidence 467889999999999999999999999999999999999999999999999999999999998887764 44443 222 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecC----CcCCHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYG----SNVSTEKRQQVLED 228 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~ 228 (409) ..++.++|+|+++++ .++++|+||+..+...+..+.++++++.+.+.++ ++++++.+ ..++++++++++++ T Consensus 155 --~~~~~~~vih~r~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~e~~~~~~~~ 231 (419) T protein:vir:57 155 --EILPMRMVHHIKSFS-LDGYIGTSPIQTNPDVLGLGIAVEQHAAQVFARGTTMSGVIERPFEAKAIASQAAVDAILAK 231 (419) T ss_pred --eEEchhhEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEecCcCCcccCHHHHHHHHHH Confidence 468999999999874 5779999999999999999999999988877664 56666664 45789999999999 Q ss_pred HHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHH Q lcl|Aclame:pro 229 FKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTL 305 (409) Q Consensus 229 ~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l 305 (409) |.+.++ |+|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+|+..+++++++.|++.+.|++++| T Consensus 232 ~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~sn~e~~~~~f~~~~l 311 (419) T protein:vir:57 232 WTERYGGVRNAFSVGMLQEGMTYKQLSQDNEKAQLLQSRQYTVNEVCRLYKVPPHMIQDLQKSTNNNIEHQGLQYVIYTM 311 (419) T ss_pred HHHHhccccccccceecCCCceEEEcCCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCccccHHHHHHHHHHHHH Confidence 999885 46889999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccc Q lcl|Aclame:pro 306 LPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) Q Consensus 306 ~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n 385 (409) .|++++||++||++||++.++ .+++++||++.+++.|.+++++.+++++++|+||+||+|+++|+||+||||++++|+| T Consensus 312 ~P~~~~ie~~l~~~ll~~~~~-~~~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD~~~~~~n 390 (419) T protein:vir:57 312 LAILKRHESAMMRDLLLPSER-RDFYIEFNVSSLLRGDQKSRYESYALGRQWGWLSVNDIRRMENLTPIPGGDKYLTPLN 390 (419) T ss_pred HHHHHHHHHHHHhhccCcccc-CCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccc Confidence 999999999999999998766 5889999999999999999999999999999999999999999999999999999999 Q ss_pred ccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 386 ~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ++++..+.+..+......++.+.. T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~ 414 (419) T protein:vir:57 391 MVDSKALTGIGKATPQQLKDIEAI 414 (419) T ss_pred cccccccccccCCCcccCcchhhh Confidence 998776554322211111111111 No 24 >protein:vir:4337 Length: 434 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061500;genbank:gi:9635589;genbank:GeneID:1262858 Probab=100.00 E-value=3.2e-91 Score=516.67 Aligned_cols=404 Identities=21% Similarity=0.292 Sum_probs=341.9 Q ss_pred Ccc--hhhhhhhhhhhhcc---cccCccccc-----ccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAK--ENIVTRIKKKLIDN---WIDQSASKL-----YDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~--~~~~~r~~~~~~~~---~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |.- .++++|.+.+..+. +.++..... ..|.+..+.++..|+.+.++++++|++||++||++||++||+++ T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~v~~~~al~~~~V~~~i~~ia~~ia~lp~~~~ 80 (434) T protein:vir:43 1 MSKSLGKVLSSATSAPRSSLFGWGGKTIRLTDGAFWSQFLGRESSSGKKVTVDKAMKLSAVWACVRLISTSVAGLPLGVY 80 (434) T ss_pred CccchhhhhhhcccccchhhhcccccccccCchHHHHHHhcCCccCCceechhhhhccHHHHHHHHHHHHhhhhCceEEE Confidence 644 45555544433222 222221111 11222233456778999999999999999999999999999998 Q ss_pred eccc------cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce Q lcl|Aclame:pro 71 EDYK------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE 144 (409) Q Consensus 71 ~~~~------~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~ 144 (409) +++. ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.++ .|++.+|+||+|+.|++..+.+|.. T Consensus 81 ~~~~~g~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~~~-~G~~~~L~~l~p~~v~~~~~~~g~~ 159 (434) T protein:vir:43 81 ERKADGSRVDARSFPLYDVVHNSPNDDMTAFQFWQAMVASMLLWGNAYAEIRRA-AGRPAALDFLLPSRVDLECDENGRL 159 (434) T ss_pred EEcCCCccccccccHHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEcCCCeE Confidence 7542 35688999999999999999999999999999999999999877 6999999999999999999888765 Q ss_pred eEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHH Q lcl|Aclame:pro 145 LYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKR 222 (409) Q Consensus 145 ~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 222 (409) . |.++..+|..+.|+++||||++++ +.++.+|+||+..+...+.++.++++++...+.++ ++++++.++.+++++. T Consensus 160 ~-y~~~~~~g~~~~~~~~eVih~~~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~ 237 (434) T protein:vir:43 160 K-YFYTTKKGARREIERTNMLHIPAF-TLDGRIGLSAIRYGVDVFGSVMSAEDAANGTFKNGLLPTVAFKVDRILQPAQR 237 (434) T ss_pred E-EEEEecCceEEEEccccEEEecCc-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEecCCCCCHHHH Confidence 5 455667788899999999999987 56789999999999999999999999988877664 6788999999999999 Q ss_pred HHHHHHHHHHhc--CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCc--cccHHHHHH Q lcl|Aclame:pro 223 QQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTN--FAKNEELNR 298 (409) Q Consensus 223 ~~~~~~~~~~~~--~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~--~~~~e~~~~ 298 (409) +++++.|++..+ |+|+++|+++|++|+++++++.|+||+|.+++++++||++|||||.+||..+.++ +++.|++.. T Consensus 238 ~~~r~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~s~~e~~~~ 317 (434) T protein:vir:43 238 EEFREYVKSVSGAMNSGRSPVLEQGITPETIGINPVDAQLLETREHGVIEICRWFGVPPWMIGQTDKGSNWGTGLEQQML 317 (434) T ss_pred HHHHHHHHHhcCccccCCccccCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCcCCccccchHHHHHH Confidence 999999987653 6789999999999999999999999999999999999999999999998876554 789999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD 378 (409) Q Consensus 299 ~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd 378 (409) .|+.+||.|++++||++||++|+++.++ .+++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+|||| T Consensus 318 ~f~~~~L~P~~~~ie~~ln~kL~~~~~~-~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~p~~ggD 396 (434) T protein:vir:43 318 AFLTFSISSITNQIQQCVNKRLLTAPER-IRYYAEFSLEGFLKADSAGRAAWYSTMAQNGFMTRNEGRRKENLPELPGGD 396 (434) T ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhh-cCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCC Confidence 9999999999999999999999998775 478899999999999999999999999999999999999999999999999 Q ss_pred EEeecccccchhccccccccc--CCCCC------CCCC Q lcl|Aclame:pro 379 KPLISGDLYPIDTPLELRKSL--KGGDK------NVNE 408 (409) Q Consensus 379 ~~~~~~n~~~~~~~~~~~~~~--~gg~~------n~~~ 408 (409) ++++|+|++|++...+.+... +++.. ..+| T Consensus 397 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (434) T protein:vir:43 397 ILTVQSNLVPIDQLGQSNKSQAVRAALMNWFSQPEPQE 434 (434) T ss_pred eEeeccCccchhhhhccCCCcchhhhhhccCCCCCCCC Confidence 999999999998776544322 12222 2222 No 25 >protein:vir:98396 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918929;genbank:gi:119443691;genbank:GeneID:4594558 Probab=100.00 E-value=3.7e-91 Score=516.39 Aligned_cols=395 Identities=21% Similarity=0.308 Sum_probs=332.8 Q ss_pred CcchhhhhhhhhhhhcccccCccccccc----ccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-c Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYD----FSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-V 75 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~ 75 (409) |++.++|.+.+.+... .+...... ...+.+.+...++...++++++|++||++||++||++|++++++++ . T Consensus 23 ~~~~~~f~~~e~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~acv~~Ia~~iA~lpl~~~~~~~~~ 98 (441) T protein:vir:98 23 LVVVGIFYKNEKRDLQ----YNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQIN 98 (441) T ss_pred hhcccccccccccccc----CCCcchHHHHHHhhcccccCccccchhhhhccHHHHHHHHHHHHhhccCceEEecCCccc Confidence 7777777665433111 01111111 1223455667788999999999999999999999999999998654 3 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---C Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---A 152 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~ 152 (409) ..+++.++|+.+||++||+++||+.++.+++++||||++++|+..|+|.+|+|++|+.|++..+.+|.+.++.+.. . T Consensus 99 ~~~~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~ 178 (441) T protein:vir:98 99 YSDRIVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKLDARGRLYYFHQRIDSNG 178 (441) T ss_pred ccchHHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEECCCCcEEEEEEEeccCc Confidence 5678999999999999999999999999999999999999999999999999999999999999888876655432 2 Q ss_pred CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHH Q lcl|Aclame:pro 153 TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDF 229 (409) Q Consensus 153 ~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~ 229 (409) .+..+.++++||||+++++ .++++|+||+.++..++.++.++++++.+++.++ ++++++.++.+ ++++.++++++| T Consensus 179 ~~~~~~~~~~dviHir~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~~~~~e~~~~~~~~~ 257 (441) T protein:vir:98 179 NNIERNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEF 257 (441) T ss_pred ceeeEEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHH Confidence 3456789999999999864 5779999999999999999999999988877665 67788888877 577889999999 Q ss_pred HHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLL 306 (409) Q Consensus 230 ~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~ 306 (409) ++.++ |+|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||.... .++.+++...|. .||. T Consensus 258 ~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~r~~~~~~Ia~~fgVPp~~lg~~~~--~~s~~q~~~~y~-~tl~ 334 (441) T protein:vir:98 258 HKSFSGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA--NMSITDANLDYL-STLK 334 (441) T ss_pred HHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCCC--CccHHHHHHHHH-HHHH Confidence 99885 56889999999999999999999999999999999999999999999986432 234566665555 6999 Q ss_pred HHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEeecc Q lcl|Aclame:pro 307 PIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPLISG 384 (409) Q Consensus 307 P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~~~~ 384 (409) |++++||++||++|+++. .+.+++||++++++.|.+++++++++++++|++|+||+|+++|+||+|||| .+++|+ T Consensus 335 P~~~~ie~~ln~~L~~~~---~~~~~~fd~~~llr~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~gGd~~~~~~~~ 411 (441) T protein:vir:98 335 PYITCVCAELNFKFNDEY---VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDL 411 (441) T ss_pred HHHHHHHHHHHhhccccc---cCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecc Confidence 999999999999998764 467899999999999999999999999999999999999999999999988 578999 Q ss_pred cccchhcccccc--------cccCCCCCCC Q lcl|Aclame:pro 385 DLYPIDTPLELR--------KSLKGGDKNV 406 (409) Q Consensus 385 n~~~~~~~~~~~--------~~~~gg~~n~ 406 (409) |++|++..++.+ ...||||+|+ T Consensus 412 n~~~~~~~~~~q~~~~~~~~~~~kgGe~ne 441 (441) T protein:vir:98 412 NHVNIELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred cccccccccccccccccccccccCCCCCCC Confidence 999998776544 2347777766 No 26 >protein:vir:79984 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001430000;genbank:gi:156604055;genbank:GeneID:5525444 Probab=100.00 E-value=3.9e-91 Score=516.25 Aligned_cols=399 Identities=20% Similarity=0.293 Sum_probs=331.2 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-cccch Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-VVNTE 79 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~~ 79 (409) |++-++|.+.+.+.....-............+.+.+...++...++++++|++||++||++||++|++++++++ ...|+ T Consensus 23 ~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~ 102 (441) T protein:vir:79 23 LVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR 102 (441) T ss_pred hhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecCccccccch Confidence 77666665543331110000000011112223445566788899999999999999999999999999998664 45688 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---CCCeE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---ATGNK 156 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~~g~~ 156 (409) +.++|+.+||++||+++||+.++.+++++||||++++|+..|+|.+|+|++|+.|++..+.+|.+.++++.. ..+.. T Consensus 103 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~ 182 (441) T protein:vir:79 103 IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIE 182 (441) T ss_pred HHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCceeE Confidence 899999999999999999999999999999999999999999999999999999999999888876655432 23446 Q ss_pred EEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 LIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDFKQYY 233 (409) Q Consensus 157 ~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 233 (409) +.++++||||+|++ +.++++|+||+.++..++.++.++++++.+++.++ ++++++.++.+ +++++++++++|++.+ T Consensus 183 ~~~~~~dvih~k~~-~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~ 261 (441) T protein:vir:79 183 RNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSF 261 (441) T ss_pred EEEccccEEEeccC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHh Confidence 78999999999986 45779999999999999999999999998877664 67788888776 5788899999999988 Q ss_pred c---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 E---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 234 ~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) + |+|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||... ++ ++.+++... +..||.|+++ T Consensus 262 ~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~-~s~~q~~~~-~~~tl~P~~~ 338 (441) T protein:vir:79 262 SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET-AN-MSITDANLD-YLSTLKPYIT 338 (441) T ss_pred cCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC-CC-ccHHHHHHH-HHHHHHHHHH Confidence 5 5788999999999999999999999999999999999999999999998643 22 344555554 5579999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~~~~n~~~ 388 (409) +||++||++|+++. .+.+++||++++++.|.+++++.+++++++|+||+||+|+++|+||+|||| .+++++|++| T Consensus 339 ~ie~eln~kl~~~~---~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~ 415 (441) T protein:vir:79 339 CVCAELNFKFNDEY---VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVN 415 (441) T ss_pred HHHHHHhhhccccc---cCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccc Confidence 99999999998753 478899999999999999999999999999999999999999999999988 5889999999 Q ss_pred hhcccccc--------cccCCCCCCC Q lcl|Aclame:pro 389 IDTPLELR--------KSLKGGDKNV 406 (409) Q Consensus 389 ~~~~~~~~--------~~~~gg~~n~ 406 (409) ++..++.+ ...||||+|+ T Consensus 416 ~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:79 416 IELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred cccccccccccccccccccCCCCCCC Confidence 98776543 2346777777 No 27 >protein:vir:9408 Length: 441 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803386;genbank:gi:29028698;genbank:GeneID:1258164 Probab=100.00 E-value=3.9e-91 Score=516.25 Aligned_cols=399 Identities=20% Similarity=0.293 Sum_probs=331.2 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-cccch Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-VVNTE 79 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~~ 79 (409) |++-++|.+.+.+.....-............+.+.+...++...++++++|++||++||++||++|++++++++ ...|+ T Consensus 23 ~~~~~lf~~~e~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~V~~cv~~Ia~~iA~lp~~~~~~~~~~~~~~ 102 (441) T protein:vir:94 23 LVVVGIFYKNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR 102 (441) T ss_pred hhccccccccccccccCCCcchHHHHHHhcccCcccccccchhhhhccHHHHHHHHHHHHhhccCceeeecCccccccch Confidence 77666665543331110000000011112223445566788899999999999999999999999999998664 45688 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---CCCeE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---ATGNK 156 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~~g~~ 156 (409) +.++|+.+||++||+++||+.++.+++++||||++++|+..|+|.+|+|++|+.|++..+.+|.+.++++.. ..+.. T Consensus 103 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~d~~g~~~~~~~~~~~~~~~~~ 182 (441) T protein:vir:94 103 IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIE 182 (441) T ss_pred HHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEeccCCceeE Confidence 899999999999999999999999999999999999999999999999999999999999888876655432 23446 Q ss_pred EEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 LIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDFKQYY 233 (409) Q Consensus 157 ~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 233 (409) +.++++||||+|++ +.++++|+||+.++..++.++.++++++.+++.++ ++++++.++.+ +++++++++++|++.+ T Consensus 183 ~~~~~~dvih~k~~-~~dg~~G~spl~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~e~~e~~r~~~~~~~ 261 (441) T protein:vir:94 183 RNVKFEDMLDIKFY-SLDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSF 261 (441) T ss_pred EEEccccEEEeccC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEcCCCCCCHHHHHHHHHHHHHHh Confidence 78999999999986 45779999999999999999999999998877664 67788888776 5788899999999988 Q ss_pred c---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 E---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 234 ~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) + |+|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||... ++ ++.+++... +..||.|+++ T Consensus 262 ~G~~nag~~~vl~~G~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~-~s~~q~~~~-~~~tl~P~~~ 338 (441) T protein:vir:94 262 SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIET-AN-MSITDANLD-YLSTLKPYIT 338 (441) T ss_pred cCccccCcceecCCCceEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHcCCCC-CC-ccHHHHHHH-HHHHHHHHHH Confidence 5 5788999999999999999999999999999999999999999999998643 22 344555554 5579999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~~~~n~~~ 388 (409) +||++||++|+++. .+.+++||++++++.|.+++++.+++++++|+||+||+|+++|+||+|||| .+++++|++| T Consensus 339 ~ie~eln~kl~~~~---~~~~~~fd~~~llr~D~~~~~~~~~~~i~~G~~T~NE~R~~~gl~Pi~ggd~~~~~~~~n~~~ 415 (441) T protein:vir:94 339 CVCAELNFKFNDEY---VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVN 415 (441) T ss_pred HHHHHHhhhccccc---cCceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccc Confidence 99999999998753 478899999999999999999999999999999999999999999999988 5889999999 Q ss_pred hhcccccc--------cccCCCCCCC Q lcl|Aclame:pro 389 IDTPLELR--------KSLKGGDKNV 406 (409) Q Consensus 389 ~~~~~~~~--------~~~~gg~~n~ 406 (409) ++..++.+ ...||||+|+ T Consensus 416 ~~~~~~~~~~~~~~~~~~~kgGe~~e 441 (441) T protein:vir:94 416 IELVDEYQMNKSRATDKKLKGGEENE 441 (441) T ss_pred cccccccccccccccccccCCCCCCC Confidence 98776543 2346777777 No 28 >protein:vir:81072 Length: 432 # NCBI annotation: p07 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285677;genbank:gi:148727185;genbank:GeneID:5247117 Probab=100.00 E-value=1.3e-90 Score=513.37 Aligned_cols=401 Identities=19% Similarity=0.256 Sum_probs=336.3 Q ss_pred Ccchhhhhhhhhhhhc-ccccCc----c----cccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLID-NWIDQS----A----SKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~~~~~~r~~~~~~~-~~~~~~----~----~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |+++ +|.+..+.. ..+... . .....+..+.+.++..|+.+.++++++|++||++||++||++|+++++ T Consensus 7 mg~f---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~ 83 (432) T protein:vir:81 7 LGLF---GQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYM 83 (432) T ss_pred cchh---hhhhhhcccccccccccccccccCccchhhhcccccccCcccchHhhhccHHHHHHHHHHHHhhhhCceeeEE Confidence 7774 454332211 011110 0 011112233455677889999999999999999999999999999987 Q ss_pred ccc-----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE Q lcl|Aclame:pro 72 DYK-----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY 146 (409) Q Consensus 72 ~~~-----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~ 146 (409) +.+ ..+|++.++|+.+||++||+++||+.++.+++++||||+++.++ .|++.+|+||+|+.|++..+.+|.. . T Consensus 84 ~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnayv~i~~~-~g~~~~L~~l~~~~v~v~~~~~g~~-~ 161 (432) T protein:vir:81 84 RTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDPKGNT-A 161 (432) T ss_pred ecCCcceecccchHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEECCCCcE-E Confidence 532 35688999999999999999999999999999999999999987 4899999999999999999888754 5 Q ss_pred EEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHH Q lcl|Aclame:pro 147 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQ 224 (409) Q Consensus 147 ~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 224 (409) |.++..+|..+.+++++|+|+|++ +.++.+|+||+..+...|.++.++++++.+++.++ ++++++.++.++++++++ T Consensus 162 y~~~~~~g~~~~~~~~~iih~r~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~ 240 (432) T protein:vir:81 162 YRYRRTDGQMIDIPKQQIWKIMGY-SLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDS 240 (432) T ss_pred EEEEecCceEEEEccccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHH Confidence 566677888899999999999986 45778999999999999999999999998877664 678899999999999999 Q ss_pred HHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc---ccHHHHHHHHH Q lcl|Aclame:pro 225 VLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF---AKNEELNRFYL 301 (409) Q Consensus 225 ~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~---~~~e~~~~~~~ 301 (409) ++++|+.. .++|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||..+.+++ ++.|++.+.|+ T Consensus 241 ~~~~~~~~-~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~sn~eq~~~~f~ 319 (432) T protein:vir:81 241 FAKKVSGS-VEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFL 319 (432) T ss_pred HHHHHhhh-hcCCCceecCCCceEEEccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCccccccchHHHHHHHHH Confidence 99998753 567899999999999999999999999999999999999999999999998776544 78999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC-EE Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD-KP 380 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd-~~ 380 (409) ++||.||++.||++||++|+++.++ .+++++||++++++.|.+++++++.+++++|+||+||+|+++|+||+|||+ .+ T Consensus 320 ~~tl~P~~~~ie~~l~~kLl~~~~~-~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~t~NE~R~~~glpp~~g~~~~~ 398 (432) T protein:vir:81 320 TMTLSPWLRRIEQSIALNLLSPAER-RRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVL 398 (432) T ss_pred HHHHHHHHHHHHHHHHhhccCcccc-CceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceE Confidence 9999999999999999999998775 478999999999999999999999999999999999999999999999765 55 Q ss_pred eecccccchhccccccc-ccCCCCCCCCCC Q lcl|Aclame:pro 381 LISGDLYPIDTPLELRK-SLKGGDKNVNES 409 (409) Q Consensus 381 ~~~~n~~~~~~~~~~~~-~~~gg~~n~~~~ 409 (409) ++++|++|++...+... ...+++.|+++. T Consensus 399 ~~~~~~~pl~~~~~~~~~~~~~~~~n~~~~ 428 (432) T protein:vir:81 399 TVQSAMVPLDSIGLQASPEPASGLGNQQQD 428 (432) T ss_pred eecCcccchhhhccCCCCCCCCCCCCcccc Confidence 68999999987654322 122333333333 No 29 >protein:vir:8418 Length: 409 # NCBI annotation: gp13 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:155 # MgeName: Omega # Cross-refs: genbank:acc:NP_818314;genbank:gi:29566750;genbank:GeneID:1260067 Probab=100.00 E-value=2e-90 Score=512.35 Aligned_cols=397 Identities=19% Similarity=0.295 Sum_probs=333.8 Q ss_pred Ccchh-hhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc---c Q lcl|Aclame:pro 1 MAKEN-IVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV---V 76 (409) Q Consensus 1 M~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~---~ 76 (409) |+++. ||+|..+. .......... .........+..++.+.++++++|++||++||++||++||+++++++. . T Consensus 1 Mgl~~~~f~~~~~~---~~~~~~~~~~-~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~ 76 (409) T protein:vir:84 1 MSLFTRIFSGPSEE---RTLTKISGIP-SPAEDWAMHGDRPGANSAMTLGAFYACVTLLADTVASLSIDAYRKKDNVRIP 76 (409) T ss_pred CchhhhhhcCCCcc---cccccccccc-cccchhhccCcccchhhhhccHHHHHHHHHHHHhhhhCceEEEEecCCcccc Confidence 99965 55553222 1111111111 111111224456788899999999999999999999999999986543 4 Q ss_pred cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee-ecCCCceeEEEeeCCcceEEEEcCCccee-EEEEEcCCC Q lcl|Aclame:pro 77 NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLNPDVVEMLIENQSREL-YYSIHAATG 154 (409) Q Consensus 77 ~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~-~~~~G~~~~l~~l~p~~v~~~~~~~~~~~-~~~~~~~~g 154 (409) .|++.++|+.+||++||+++||+.++.+++++||+|+++. ++..|++.+|+|++|++|++....+.... ++......| T Consensus 77 ~~~l~~lL~~~PN~~~t~~~f~~~l~~~l~l~Gn~~~~i~~~~~~g~~~~L~~l~p~~v~v~~~~~~~~~~~~~~~~~~g 156 (409) T protein:vir:84 77 VSPAPKLLESTPYPGLTWFDWLWMLMESLAVTGNAFGYISARDEANRPTAIMPIHPDCIHVTDAKDEDGDWIEPVYRIDG 156 (409) T ss_pred cchHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEECCCCceEEEEEEcCceeEEEEcCCCcceEEEEEecCCc Confidence 5889999999999999999999999999999999999886 68889999999999999998865554333 333333444 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQY 232 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (409) ..|+++||||++++++.+..+|+||+..+...+.++.++++++.+.+.++ ++++++.++.++++++++++++|.+. T Consensus 157 --~~~~~~dvih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~ 234 (409) T protein:vir:84 157 --KVVPNHRIMHIKRYPVAGCALGMSPIEKAASAIGLGLAAERYGLRWFRDSANPSGILSSDADLTPDQVKQTQKQWIQS 234 (409) T ss_pred --eEEchhhEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHHHHHHHH Confidence 46899999999998888888999999999999999999999998877664 67888999999999999999999999 Q ss_pred hcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCc--cccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 233 YEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTN--FAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 233 ~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~--~~~~e~~~~~~~~~~l~P~~~ 310 (409) +.|+|+++|+++|++|+++++++.|+||+|.+++++++||++|||||.+||..+.++ +++.|++...|+.+||.|+++ T Consensus 235 ~~n~g~~~vl~~g~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~e~~~~~f~~~~l~P~~~ 314 (409) T protein:vir:84 235 HHNRRLPAVMSAGIKWQSVSITPNESQFLETRSFQRSEIAMWFRIPPHMIGDVEKSTSWGTGIEEQGINFVRHTLLPWLR 314 (409) T ss_pred hccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCcccccchHHHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999999999999999999999999999876655 478999999999999999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchh Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPID 390 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~ 390 (409) .||++||++|. .+.+++||++++++.|.+++++++.+++++|+||+||+|+++|+||+||||++++|+|++|++ T Consensus 315 ~ie~~l~~~L~------~g~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~ggD~~~~~~n~~~~~ 388 (409) T protein:vir:84 315 CIEQALDTFLP------RGQFVKFNVDGLMRGDVTARFTAYQMGLQNGIWSVNEVRAWEDAPPIPEGDIHLQPMNFVPLG 388 (409) T ss_pred HHHHHHHHhcc------CCCeEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeecccccccc Confidence 99999999873 478899999999999999999999999999999999999999999999999999999999998 Q ss_pred cccccccccCCCCCCCCCC Q lcl|Aclame:pro 391 TPLELRKSLKGGDKNVNES 409 (409) Q Consensus 391 ~~~~~~~~~~gg~~n~~~~ 409 (409) .++..+...++..+++.+| T Consensus 389 ~~~~~~~~~~~~~~~~~~g 407 (409) T protein:vir:84 389 YVPPEEPAQEPQPNSATEG 407 (409) T ss_pred cCCccccCcCCCCCCccCC Confidence 8766554433322333333 No 30 >protein:vir:10362 Length: 432 # NCBI annotation: head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858954;genbank:gi:32128419;genbank:GeneID:2648396 Probab=100.00 E-value=2.2e-90 Score=512.10 Aligned_cols=401 Identities=19% Similarity=0.254 Sum_probs=335.9 Q ss_pred Ccchhhhhhhhhhhhcc-c----ccCccc----ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN-W----IDQSAS----KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~-~----~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |++ |+|++..+... . ...... ....+....+.++..|+.+.++++++||+||++||++||++||++|+ T Consensus 7 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~v~~~~al~~~~V~~~i~~Ia~~ia~lp~~~y~ 83 (432) T protein:vir:10 7 LGL---LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAIAAMPLTMYM 83 (432) T ss_pred cch---hhhhHhhcCCccccccccccccccCcchhhhhcccccccCcccchhhhhcchHHHHHHHHHHHhhhhCceeEEE Confidence 665 44544433211 0 000000 00112223345677889999999999999999999999999999997 Q ss_pred cc-----ccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE Q lcl|Aclame:pro 72 DY-----KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY 146 (409) Q Consensus 72 ~~-----~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~ 146 (409) ++ +..+|++.++|+.+||++||+++||+.++.+++++||||+++.|+ .|++.+|+||+|+.|++..+.+|.. . T Consensus 84 ~~~~g~~~~~~~~l~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~~~~v~v~~~~~g~~-~ 161 (432) T protein:vir:10 84 RTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNT-A 161 (432) T ss_pred ecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCCceEEEEcCCCcE-E Confidence 54 235688999999999999999999999999999999999999997 5999999999999999999888765 5 Q ss_pred EEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHH Q lcl|Aclame:pro 147 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQ 224 (409) Q Consensus 147 ~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 224 (409) |.++..+|..+.|++++|+|++++ +.++++|+||+..+...+.++.++++++.++|.++ ++++++.++.++++++++ T Consensus 162 y~~~~~~g~~~~~~~~~iih~~~~-~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~ 240 (432) T protein:vir:10 162 YRYRRTDGQMIDIPKQQIWKIMGY-SLDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDS 240 (432) T ss_pred EEEEecCceEEEEcCccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCCCCHHHHHH Confidence 556667888899999999999987 45789999999999999999999999988777664 678899999999999999 Q ss_pred HHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCc---cccHHHHHHHHH Q lcl|Aclame:pro 225 VLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTN---FAKNEELNRFYL 301 (409) Q Consensus 225 ~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~---~~~~e~~~~~~~ 301 (409) ++++|.. ..++|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||..+.++ +++.|++.+.|+ T Consensus 241 ~~~~~~~-~~nag~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~~~~~t~~~~sn~e~~~~~f~ 319 (432) T protein:vir:10 241 FAKKVSG-SVEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFL 319 (432) T ss_pred HHHHHhh-hhhCCCceecCCCceEEEccCChHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCcccccchHHHHHHHHH Confidence 9999975 356789999999999999999999999999999999999999999999999876554 478999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC-EE Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD-KP 380 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd-~~ 380 (409) ++||.|++++||++||++|+++.++ .+++++||++++++.|.+++++.+.+++++|+||+||+|+++|+||+|||+ .+ T Consensus 320 ~~tl~P~~~~ie~~ln~kL~~~~~~-~~~~~~fd~~~ll~~d~~~r~~~~~~~~~~G~~T~NE~R~~~glppi~g~~~~~ 398 (432) T protein:vir:10 320 SMTLSPWLRRIEQSIALNLLSPAER-RRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVL 398 (432) T ss_pred HHHHHHHHHHHHHHHHhhhcCcccc-CceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceE Confidence 9999999999999999999998775 468899999999999999999999999999999999999999999999775 45 Q ss_pred eecccccchhccccccc-ccCCCCCCCCCC Q lcl|Aclame:pro 381 LISGDLYPIDTPLELRK-SLKGGDKNVNES 409 (409) Q Consensus 381 ~~~~n~~~~~~~~~~~~-~~~gg~~n~~~~ 409 (409) ++++|++|++...+... ...+++.|+++. T Consensus 399 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~ 428 (432) T protein:vir:10 399 TVQSAMVPLDSIGLQASPEPASGLGNQQQD 428 (432) T ss_pred eecCcccchhhhcccCCCCCCCCCCCcccc Confidence 58999999987544321 222333333333 No 31 >protein:vir:97060 Length: 432 # NCBI annotation: putative head portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453563;genbank:gi:84662598;genbank:GeneID:5142475 Probab=100.00 E-value=2.6e-90 Score=511.76 Aligned_cols=401 Identities=19% Similarity=0.252 Sum_probs=337.6 Q ss_pred Ccchhhhhhhhhhhhcc-----cccCcccc----cccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN-----WIDQSASK----LYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~-----~~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |++ |+|++..+... ........ ...+....+.++..|+.+.++++++|++||++||++||++|+++|+ T Consensus 7 ~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~a~~~~aV~~~v~~Ia~~ia~lp~~~y~ 83 (432) T protein:vir:97 7 LGL---LGQLKAMFVPPDPVDIGGGQTFTPVNATARDLGIIISDTGAAVNADAIMRLDAVAACVKLVSQAVAAMPLMMYM 83 (432) T ss_pred Cch---hhhhHhhcCCccccccccccccccCchhhhhhcccccccCcccchHhhhcchHHHHHHHHHHHhhccCceEEEE Confidence 666 45544433211 00011010 0112223345677889999999999999999999999999999997 Q ss_pred ccc-----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE Q lcl|Aclame:pro 72 DYK-----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY 146 (409) Q Consensus 72 ~~~-----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~ 146 (409) +.. ..+|++.++|+.+||++||+++||+.++.+++++||||++++|+ .|++.+|+||+|+.|++..+.+|.. . T Consensus 84 ~~~~g~~~~~~~pl~~lL~~~PN~~~t~~~f~~~l~~~lll~Gnay~~~~~~-~g~~~~L~~l~p~~v~v~~~~~g~~-~ 161 (432) T protein:vir:97 84 RTPDGRKEAVNHPLYTLLLDGPNSTQTAFDFWQVVVTRLLLDGTAYVRKVVT-DGRIESLQYLANDRLTITTDTKGNT-A 161 (432) T ss_pred ecCCCcccccccHHHHHHHhcccccCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEcCcceEEEEcCCCcE-E Confidence 542 35688999999999999999999999999999999999999997 4899999999999999999888764 5 Q ss_pred EEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHH Q lcl|Aclame:pro 147 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQ 224 (409) Q Consensus 147 ~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 224 (409) |.++..+|+.+.+++++|+|+|+++ .++.+|+||+..+...+.++.++++++.+++.++ ++++++.++.++++++++ T Consensus 162 y~~~~~~g~~~~~~~~~iih~r~~~-~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~ 240 (432) T protein:vir:97 162 YRYRRTDGQMIDIPRQQIWKIMGYS-LDGENGLSAIRYGAQIFGTAIAAEAQAARAFRNGQLQSVYYQIDRFLTDDQYDS 240 (432) T ss_pred EEEEecCceEEEEccccEEEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceeEecCCCCCHHHHHH Confidence 5666778888999999999999864 5779999999999999999999999998877664 678999999999999999 Q ss_pred HHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc---ccHHHHHHHHH Q lcl|Aclame:pro 225 VLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF---AKNEELNRFYL 301 (409) Q Consensus 225 ~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~---~~~e~~~~~~~ 301 (409) ++++|... .++|+++|+++|++|+++++++.|+|++|.+++++++||++|||||++||..+.+++ ++.|++.+.|+ T Consensus 241 ~~~~~~~~-~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~t~~~~s~~e~~~~~f~ 319 (432) T protein:vir:97 241 FSKKVSGS-VEAGRAPLLEGGMDVKSLGLNPVDAQLLQSRQYSVESICRFFGVPPSMIGHSSAGTTSWGSGIESQQLGFL 319 (432) T ss_pred HHHHHhhh-hcCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCcCCcccccchhHHHHHHHHH Confidence 99988753 467899999999999999999999999999999999999999999999998766544 78999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEE- Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKP- 380 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~- 380 (409) ++||.|+++.||++||++|+++.++ .+++++||++++++.|.+++++.+.+++++|+||+||+|+++|+||++|||.+ T Consensus 320 ~~tl~P~~~~ie~~ln~kLl~~~e~-~~~~~~fd~~~llr~d~~~r~~~~~~~~~~G~~T~NE~R~~~glpp~~g~~~~~ 398 (432) T protein:vir:97 320 TMTLSPWLRRIEQSIALNLLTPAER-RRYFADFDTSALLRADSAARSSYYSQLVNNGLMTRDEAREIEGLPKLGGNAAVL 398 (432) T ss_pred HHHHHHHHHHHHHHHhhhccCcccc-CceEEEeechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCcceE Confidence 9999999999999999999998775 47899999999999999999999999999999999999999999999987655 Q ss_pred eecccccchhcccccc-cccCCCCCCCCCC Q lcl|Aclame:pro 381 LISGDLYPIDTPLELR-KSLKGGDKNVNES 409 (409) Q Consensus 381 ~~~~n~~~~~~~~~~~-~~~~gg~~n~~~~ 409 (409) .+++|++|++...... ....+++.|+++. T Consensus 399 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~ 428 (432) T protein:vir:97 399 TVQSAMVPLDSIGLQASPEPASGLGNQQQD 428 (432) T ss_pred eecccccchhhhcccCCCCCCCCCCCcccc Confidence 5899999998764432 1223444444444 No 32 >protein:vir:1431 Length: 419 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536360;genbank:gi:17975165;genbank:GeneID:929165 Probab=100.00 E-value=3.3e-90 Score=511.16 Aligned_cols=397 Identities=20% Similarity=0.324 Sum_probs=334.6 Q ss_pred CcchhhhhhhhhhhhcccccCcccccc-cccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc----- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLY-DFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK----- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~----- 74 (409) |.|...+.+.... .......... .++...+.++..|+.+.++++++|++||++||++||++||+++++++ T Consensus 1 ~~~~r~~~~~~~~----~~~~~~~~~~~~~g~~~s~~~~~vt~~~al~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~ 76 (419) T protein:vir:14 1 MFFSRQLLSNLGQ----TQMSAGGWVSALLGSSRSDSGQVVTPASALALTVLQNCVTLLAESIAQLPIELYERSGEDRKP 76 (419) T ss_pred Ccccccccccccc----cccCcchhhHHhhcCCCccCCcccchHHhhccHHHHHHHHHHHHhhccCceEEEEecCCcccc Confidence 7766554443221 1111111111 12223345667789999999999999999999999999999998553 Q ss_pred cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCC Q lcl|Aclame:pro 75 VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG 154 (409) Q Consensus 75 ~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g 154 (409) ..+|++.++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|||++|..|++..+.++... |.++... T Consensus 77 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~l~pl~~~~v~v~~~~~~~~~-y~~~~~~- 154 (419) T protein:vir:14 77 ATDHPLYSILKYEPNSWQTPFEYQEQSQVAVGLRGNSYSFIDRDSDGVIQGLYPLDNEAVTVMRGSDLKPV-YRVRGSD- 154 (419) T ss_pred ccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEE-EEEccCc- Confidence 34688999999999999999999999999999999999999999999999999999999999988877654 4444332 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC----CHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV----STEKRQQVLED 228 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~ 228 (409) .++.++|+|+++++ .++++|+||+..+..++....++++++...+.++ ++++++.++.+ ++++.+++++. T Consensus 155 ---~~~~~~i~h~~~~~-~dg~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~ 230 (419) T protein:vir:14 155 ---PMPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPKDAPALKDQASVDRITDG 230 (419) T ss_pred ---ccchhheeEecCcC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCcccCHHHHHHHHHH Confidence 37889999999875 5789999999999999999999999988877664 56777776554 68899999999 Q ss_pred HHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHH Q lcl|Aclame:pro 229 FKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTL 305 (409) Q Consensus 229 ~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l 305 (409) |++.++ ++|+++|+++|++|+++++++.|+|++|.+++++++||++|||||.+|+..+++++++.|++.+.|++++| T Consensus 231 ~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~t~s~~E~~~~~f~~~~L 310 (419) T protein:vir:14 231 WNAKFGGSGNAKKVALLQEGMTFRPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) T ss_pred HHHHhcCccccCCceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHH Confidence 999886 45789999999999999999999999999999999999999999999999889999999999999999999 Q ss_pred HHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccc Q lcl|Aclame:pro 306 LPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) Q Consensus 306 ~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n 385 (409) .|++++||++||++||++.++ .+++++||++++++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+| T Consensus 311 ~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~~l~r~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gGD~~~~~~n 389 (419) T protein:vir:14 311 LPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMN 389 (419) T ss_pred HHHHHHHHHHHhhhccCcccc-CCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcCeeeeccc Confidence 999999999999999998776 5889999999999999999999999999999999999999999999999999999999 Q ss_pred ccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 386 ~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++++.+.+.+.+ +.++.+.... T Consensus 390 ~~~~~~~~~~~~~-~~~~~~~~~~ 412 (419) T protein:vir:14 390 MVDASKPQQLPVG-KSEPTKAAID 412 (419) T ss_pred cccccccccccCC-CCCCcccccc Confidence 9998876543222 1222222222 No 33 >protein:vir:80333 Length: 419 # NCBI annotation: gp4, phage portal protein, HK97 family # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111083;genbank:gi:134288632;genbank:GeneID:4960580 Probab=100.00 E-value=5.4e-89 Score=504.51 Aligned_cols=394 Identities=20% Similarity=0.325 Sum_probs=334.9 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccc-cccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc----- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDF-SPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK----- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~----- 74 (409) |.|.+++.|.... ..+....+...+ +...+.++..|+.+.++++++|++||++||++||++|++++++++ T Consensus 1 m~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~s~~~~~v~~~~al~~~~v~~cv~~ia~~ia~lp~~~~~~~~~~~~~ 76 (419) T protein:vir:80 1 MFFSRQLLSNLGQ----TQPGSGGWVSALLGSARSEAGQVVTPASALSLTVLQNCVTLLAESIAQLPVELYERSGDDRKP 76 (419) T ss_pred CCcccccccccCc----CCCCcchhhHHhhcccccccCcccChHHhhccHHHHHHHHHHHHhhccCceEEEEecCCCccc Confidence 9887766553221 111111111111 222334567789999999999999999999999999999998553 Q ss_pred cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCC Q lcl|Aclame:pro 75 VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG 154 (409) Q Consensus 75 ~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g 154 (409) ..+|++.++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|||++|..|++..+.++... |.+... T Consensus 77 ~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~r~~~G~~~~L~~i~~~~v~i~~~~~~~~~-y~~~~~-- 153 (419) T protein:vir:80 77 ATDHPLYSILKYEPNPWQTPFEYQEQSQVAVGLRGNSYSFIDRDQDGVIQGLYPLDNEAVTVMKGPDLKPM-YRVAGA-- 153 (419) T ss_pred ccccHHHHHHHhhcccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEecCceEEEEECCCceEE-EEEcCc-- Confidence 24688999999999999999999999999999999999999999999999999999999999988877654 333322 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCC----cCCHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGS----NVSTEKRQQVLED 228 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~ 228 (409) ..+++++|+|+++++ .++++|+||+..+...+.+..++++++...+.++ ++++++.++ ..++++.+++++. T Consensus 154 --~~~~~~~i~h~~~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~ 230 (419) T protein:vir:80 154 --DPLPQRLVHHVRWMS-INGYTGLSPVLLHANAIGHAQAIQQYAGKSFMNGTALSGVIERPTDAPALKDQASVDRITDG 230 (419) T ss_pred --cccchhheEEecCCC-CCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCcccCHHHHHHHHHH Confidence 248899999999864 5789999999999999999999999988777664 566776654 3478899999999 Q ss_pred HHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHH Q lcl|Aclame:pro 229 FKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTL 305 (409) Q Consensus 229 ~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l 305 (409) |++.++ ++|+++|+++|++|+++++++.|+|++|.+++++++||++|||||.+||..+++++++.|++.+.|++++| T Consensus 231 ~~~~~~g~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~~Ia~~fgVPp~llg~~~~~t~~n~e~~~~~f~~~~l 310 (419) T protein:vir:80 231 WNAKFGGSGNAKKVALLQEGMKFKPLSMTNVDAALIDALRLSALDIARIYKIPAHMVNELERATFSNIEHQSLQFVIYTL 310 (419) T ss_pred HHHHhcCccccCCceecCCCceEEeccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhcCCCCCCcccHHHHHHHHHHHHH Confidence 999885 46789999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccc Q lcl|Aclame:pro 306 LPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) Q Consensus 306 ~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n 385 (409) .|++++||++||++||++.++ .+++++||++++++.|.+++++.+++++++|++|+||+|+++|+||+||||++++|+| T Consensus 311 ~P~~~~ie~~l~~kll~~~~~-~~~~i~fd~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gGD~~~~~~n 389 (419) T protein:vir:80 311 LPWVKRHEQAKTRDLLLPSER-KQYFIEYNLAGLLRGDQSSRYAAYAVGRQWGWLSINDIRRLENMPPVKGGDIYLSPMN 389 (419) T ss_pred HHHHHHHHHHHhhhccCcccc-CCeEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccc Confidence 999999999999999998775 4788999999999999999999999999999999999999999999999999999999 Q ss_pred ccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 386 ~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++++.+... ++|+.++.+. T Consensus 390 ~~~~~~~~~~----~~~~~~~~~~ 409 (419) T protein:vir:80 390 MVDASKPQPI----PMGKTEPTKA 409 (419) T ss_pred cccccccccc----cCCCCCchhh Confidence 9987765432 3334443334 No 34 >protein:vir:4598 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058443;genbank:gi:9635169;genbank:GeneID:1262702 Probab=100.00 E-value=1.4e-88 Score=502.24 Aligned_cols=396 Identities=20% Similarity=0.293 Sum_probs=328.4 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-cccch Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-VVNTE 79 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~~ 79 (409) |++|+ |.+.+.....-............+.+.++..++...++++++||+||++||+++|++||+++++++ ...++ T Consensus 1 Mg~f~---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~~~~ 77 (416) T protein:vir:45 1 MGIFY---KNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR 77 (416) T ss_pred CCccc---ccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCccccccch Confidence 99853 322211100000000011112234455667788899999999999999999999999999998665 34678 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---CCCeE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---ATGNK 156 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~~g~~ 156 (409) +.++|+.+||++||+++||+.++.+++++||||++++|+..|++.+|+|++|+.|++..+.+|...++.... ..+.. T Consensus 78 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 157 (416) T protein:vir:45 78 IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIE 157 (416) T ss_pred HHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCceeE Confidence 899999999999999999999999999999999999999999999999999999999999888876655432 22345 Q ss_pred EEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 LIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDFKQYY 233 (409) Q Consensus 157 ~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 233 (409) +.+++++|||+|+++ .++++|+||+.++..++.++.++++++.+.+.++ ++++++.++.+ ++++.++++++|++.+ T Consensus 158 ~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~ 236 (416) T protein:vir:45 158 RNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSF 236 (416) T ss_pred EEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 789999999999864 5789999999999999999999999988877664 67788888776 5678899999999988 Q ss_pred c---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 E---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 234 ~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) + ++|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+|+.... + ++.+++. .++..||.|+++ T Consensus 237 ~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~~~~~~~-~~~~~~l~P~~~ 313 (416) T protein:vir:45 237 SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDAN-LDYLSTLKPYIT 313 (416) T ss_pred cCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C-ccHHHHH-HHHHHHHHHHHH Confidence 5 56889999999999999999999999999999999999999999999986432 2 3445554 455679999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~~~~n~~~ 388 (409) +||++||++|+++. .+.+++||++.+++.|.+++++++++++++|+||+||+|+++|+||+|||| ++++++|++| T Consensus 314 ~ie~~ln~~l~~~~---~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~ 390 (416) T protein:vir:45 314 CVCAELNFKFNDEY---VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVN 390 (416) T ss_pred HHHHHHhhhccccc---cCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccc Confidence 99999999998764 467899999999999999999999999999999999999999999999887 6889999999 Q ss_pred hhcccccc--------cccCCCCCCC Q lcl|Aclame:pro 389 IDTPLELR--------KSLKGGDKNV 406 (409) Q Consensus 389 ~~~~~~~~--------~~~~gg~~n~ 406 (409) ++...+.+ ...||||+|+ T Consensus 391 ~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:45 391 IELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cccccccCcccccccccccCCCCCCC Confidence 98765433 2457888777 No 35 >protein:vir:81095 Length: 416 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429872;genbank:gi:156603925;genbank:GeneID:5525315 Probab=100.00 E-value=1.4e-88 Score=502.24 Aligned_cols=396 Identities=20% Similarity=0.293 Sum_probs=328.4 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-cccch Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-VVNTE 79 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~~ 79 (409) |++|+ |.+.+.....-............+.+.++..++...++++++||+||++||+++|++||+++++++ ...++ T Consensus 1 Mg~f~---~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~v~~cv~~Ia~~iA~~p~~~~~~~~~~~~~~ 77 (416) T protein:vir:81 1 MGIFY---KNEKRDLQYNEDDLQMMVQTLPGFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR 77 (416) T ss_pred CCccc---ccccccccCCCcchhHHHHHhccccccCccccchhhhhcchHHHHHHHHHHHhhccCceEEecCccccccch Confidence 99853 322211100000000011112234455667788899999999999999999999999999998665 34678 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---CCCeE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---ATGNK 156 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~~g~~ 156 (409) +.++|+.+||++||+++||+.++.+++++||||++++|+..|++.+|+|++|+.|++..+.+|...++.... ..+.. T Consensus 78 ~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~ 157 (416) T protein:vir:81 78 IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIE 157 (416) T ss_pred HHHHHhcccccCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEECCCccEEEEEEEecCCCceeE Confidence 899999999999999999999999999999999999999999999999999999999999888876655432 22345 Q ss_pred EEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 LIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDFKQYY 233 (409) Q Consensus 157 ~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 233 (409) +.+++++|||+|+++ .++++|+||+.++..++.++.++++++.+.+.++ ++++++.++.+ ++++.++++++|++.+ T Consensus 158 ~~~~~~evihir~~~-~d~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~~~~~~~~~~~~~~~~~~ 236 (416) T protein:vir:81 158 RNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFHKSF 236 (416) T ss_pred EEEccccEEEeccCC-CCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 789999999999864 5789999999999999999999999988877664 67788888776 5678899999999988 Q ss_pred c---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 E---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 234 ~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) + ++|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+|+.... + ++.+++. .++..||.|+++ T Consensus 237 ~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~-~-~~~~~~~-~~~~~~l~P~~~ 313 (416) T protein:vir:81 237 SGTKQAGKVVVLDESMTFDQLEVDTEVLKLIRENKSSTREIAGVFGIPLHKFGIETA-N-MSITDAN-LDYLSTLKPYIT 313 (416) T ss_pred cCccccCceeecCCCceeEeccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCC-C-ccHHHHH-HHHHHHHHHHHH Confidence 5 56889999999999999999999999999999999999999999999986432 2 3445554 455679999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~~~~n~~~ 388 (409) +||++||++|+++. .+.+++||++.+++.|.+++++++++++++|+||+||+|+++|+||+|||| ++++++|++| T Consensus 314 ~ie~~ln~~l~~~~---~~~~~~f~~~~l~~~D~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~~gd~~~~~~~~n~~~ 390 (416) T protein:vir:81 314 CVCAELNFKFNDEY---VNREFKFDTTEIRVVDEKTQAEIDKINIDSGKMNIDEIRQRDGLAPIPGGNGSIHRVDLNHVN 390 (416) T ss_pred HHHHHHhhhccccc---cCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCcceEeecccccc Confidence 99999999998764 467899999999999999999999999999999999999999999999887 6889999999 Q ss_pred hhcccccc--------cccCCCCCCC Q lcl|Aclame:pro 389 IDTPLELR--------KSLKGGDKNV 406 (409) Q Consensus 389 ~~~~~~~~--------~~~~gg~~n~ 406 (409) ++...+.+ ...||||+|+ T Consensus 391 ~~~~~~~~~~~~~~~~~~~kgGe~n~ 416 (416) T protein:vir:81 391 IELVDEYQMNKSRATDKKLKGGEENE 416 (416) T ss_pred cccccccCcccccccccccCCCCCCC Confidence 98765433 2457888777 No 36 >protein:vir:7853 Length: 518 # NCBI annotation: gp10 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817460;genbank:gi:29565889;genbank:GeneID:1259085 Probab=100.00 E-value=3.8e-88 Score=499.86 Aligned_cols=401 Identities=18% Similarity=0.265 Sum_probs=330.1 Q ss_pred Ccchhhhhhhhh--hhhcccccCcccccccccccCC---CCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc Q lcl|Aclame:pro 1 MAKENIVTRIKK--KLIDNWIDQSASKLYDFSPWKN---KSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) Q Consensus 1 M~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 75 (409) |-+.|=..-... +....|+.... .+.+..+ .+...+....|+++++|++||++||++||++||+++++++. T Consensus 1 ~~~~~~~~~~~p~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~V~acV~~IA~~iA~lp~~l~~~~~~ 76 (518) T protein:vir:78 1 MLLANGQTLSAPAMAELSPQMQDSY----YYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGD 76 (518) T ss_pred CcccCceeeccchhhhhhhhhhhcc----cccceeceecccccchhhHHhhhhHHHHHHHHHHHHhhccCceEEEEEcCC Confidence 544321111111 11111111111 1111111 12234455679999999999999999999999999986532 Q ss_pred ----ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc Q lcl|Aclame:pro 76 ----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) Q Consensus 76 ----~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~ 151 (409) ..++..++|+.+||++||+++||+.++.++++.||+|+++.|+..|++.+|+||+|.+|++..+.++....|.+.. T Consensus 77 ~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~Vtv~~~~~~~~~~y~~~~ 156 (518) T protein:vir:78 77 TETEEHDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQA 156 (518) T ss_pred ccccccchHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEECCCceEEEEcCCCCEEEEEEEe Confidence 2345667788899999999999999999999999999999999999999999999999999999887777777665 Q ss_pred CC---CeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHH Q lcl|Aclame:pro 152 AT---GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVL 226 (409) Q Consensus 152 ~~---g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (409) .. ++.+.|+++||||++++++.+..+|+||+.++...+....++++++.+++.++ ++++++.++.++++++++++ T Consensus 157 ~~~~~~~~~~~~~~eIiHir~~~~dg~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~Ng~~p~gvl~~~~~ls~e~~~~~k 236 (518) T protein:vir:78 157 GAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSPEAQQRLR 236 (518) T ss_pred cCCccceeEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHH Confidence 43 35678999999999998876667899999999999999999999998877765 67888999999999999999 Q ss_pred HHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 227 EDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 227 ~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) +.|++.++ |+|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||..+.++++|.|++...|+++ T Consensus 237 ~~~~~~~~G~~nag~~~vL~~G~~~~~l~~~~~d~q~le~r~~~~~eIa~afgVPp~~lg~~~~st~sn~e~~~~~f~~~ 316 (518) T protein:vir:78 237 EQFDRAHAGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAFYRD 316 (518) T ss_pred HHHHHHhcCcccCCceeEcCCCceEEeccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHHHHH Confidence 99999885 578999999999999999999999999999999999999999999999999899999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCEEe Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDKPL 381 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~~~ 381 (409) +|.|++++||++||++|+++.+ .+.+++||++.+++.|.+++++++.+++++|+||+||+|+++|+||+| |||+++ T Consensus 317 tL~P~~~~ie~eln~~L~~~~~--~~~~~~fd~~~Llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~gl~pie~~~gD~~~ 394 (518) T protein:vir:78 317 TMAIPIARIQSAMDKYVGQYWV--RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELY 394 (518) T ss_pred HHHHHHHHHHHHHHHhhccccc--CcceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceee Confidence 9999999999999999998754 467899999999999999999999999999999999999999999996 899999 Q ss_pred ecccccchhcccccccccCCCC----------------CCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGD----------------KNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~----------------~n~~~~ 409 (409) +++|++|++...... .+|++ .....+ T Consensus 395 v~~n~~pl~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 436 (518) T protein:vir:78 395 ANSALQPLGATPDGA--VEGEEAPAPKRPASTPVASLDQSPPAS 436 (518) T ss_pred ecccceecccccccc--cCCCCCCCCCCCCcccccccccCcccc Confidence 999999987643321 01111 000000 No 37 >protein:vir:6240 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813694;swissprot:trembl:q859c3;genbank:gi:29366754;interpro:IPR006427;interpro:IPR006944;uniprot:Q859C3;genbank:GeneID:1258894 Probab=100.00 E-value=3e-88 Score=500.43 Aligned_cols=406 Identities=18% Similarity=0.262 Sum_probs=331.2 Q ss_pred Ccchh-hhhhhhhhhhcccccCccc----ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc- Q lcl|Aclame:pro 1 MAKEN-IVTRIKKKLIDNWIDQSAS----KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK- 74 (409) Q Consensus 1 M~~~~-~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 74 (409) |++++ +|+|.+............. ....+ +....++..|+.+.++++++|++||++||++||++|++++++.+ T Consensus 1 Mg~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~ 79 (457) T protein:vir:62 1 MGFWSALFGRGHSPALDAAEGRAWEPYDPSIYNL-GATASSGERVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGG 79 (457) T ss_pred Cchhhhhhccccccccccccccccccchhhhhhc-cccccCCceechHHhhccHHHHHHHHHHHHhHhhCceEEEEecCC Confidence 99864 4555444322111111111 11111 12234567889999999999999999999999999999998653 Q ss_pred ---cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce---eE-- Q lcl|Aclame:pro 75 ---VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE---LY-- 146 (409) Q Consensus 75 ---~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~---~~-- 146 (409) ...++....|+.+||++||+++||+.++.+++++||||+++.++ .|.+.+|+||+|.+|++..+..+.. .+ T Consensus 80 ~~~~~~~~~~~~ll~~pn~~~t~~~f~~~~~~~l~l~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~ 158 (457) T protein:vir:62 80 TRKEIDTPEWLDFPNAEPGGMGRIDILSQTVLSLLLQGNAFLAVRWA-GPNIAGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) T ss_pred ccccccchHHHHhccccCCCCCHHHHHHHHHHHHhhcCCeEEEEEeC-CCcEEEEEEEcCcceEEEEeccCCccceeEEE Confidence 34556666677789999999999999999999999999998665 6899999999999999987654432 22 Q ss_pred EEEEcCCC--eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHH Q lcl|Aclame:pro 147 YSIHAATG--NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKR 222 (409) Q Consensus 147 ~~~~~~~g--~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 222 (409) |.+....+ ....|++++||||+.+++.+.++|+||+.++..+|.++.++++++.+.+.++ ++++++.++.++++++ T Consensus 159 y~~~~~g~~~~~~~~~~~eiih~r~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~ 238 (457) T protein:vir:62 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGAHFFRNGAMPGAVVEVPGTMSEEGL 238 (457) T ss_pred EEEccCCceeEEEeeCccceEEecCCCCCCceecccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEcCCCCCHHHH Confidence 33332222 2346899999999999887779999999999999999999999998877664 6788999999999999 Q ss_pred HHHHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc--ccHHHHH Q lcl|Aclame:pro 223 QQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF--AKNEELN 297 (409) Q Consensus 223 ~~~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~--~~~e~~~ 297 (409) +++++.|++.++ |+++++|+++|++|++++++++|+||+|.+++++++||++|||||.+||..+.+++ +|.|++. T Consensus 239 ~~~~~~~~~~~~G~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~ 318 (457) T protein:vir:62 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHH Confidence 999999999885 46889999999999999999999999999999999999999999999998777665 7899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 298 RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG 377 (409) Q Consensus 298 ~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g 377 (409) +.|+++||.|++++||++||++|+++.+. .+.+++||++++++.|.+++++.+.+++++|+||+||+|+++|+||+||| T Consensus 319 ~~f~~~~l~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~~l~~~d~~~r~~~~~~~~~~G~~T~NE~R~~~gl~pi~~g 397 (457) T protein:vir:62 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcccc-CceEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 99999999999999999999999998775 57889999999999999999999999999999999999999999999987 Q ss_pred --CEEeecccccchhcccccccccC--------------------CCCCCCCCC Q lcl|Aclame:pro 378 --DKPLISGDLYPIDTPLELRKSLK--------------------GGDKNVNES 409 (409) Q Consensus 378 --d~~~~~~n~~~~~~~~~~~~~~~--------------------gg~~n~~~~ 409 (409) |++++|+|+.+++...+.+.... +|+++++++ T Consensus 398 ~~D~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 451 (457) T protein:vir:62 398 LGEKYRVPLNLGEIGEEPEPEPAPAPPAIDPPAEEPADDEEPDNAEGDPDEGET 451 (457) T ss_pred CcceeeeccccccccccccccccCCCccCCCCccCCCCCCCCCCCCCCCccccc Confidence 99999999998876544322110 111111111 No 38 >protein:vir:101648 Length: 518 # NCBI annotation: gp11 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654766;genbank:gi:109302764;genbank:GeneID:4156082 Probab=100.00 E-value=8.6e-88 Score=497.90 Aligned_cols=401 Identities=18% Similarity=0.275 Sum_probs=329.5 Q ss_pred Ccchh--hhhhhhhhhhcccccCcccccccccccCC---CCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc Q lcl|Aclame:pro 1 MAKEN--IVTRIKKKLIDNWIDQSASKLYDFSPWKN---KSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) Q Consensus 1 M~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 75 (409) |-+.| .++--..+....++. ..+.+.+..+ .....+....|+++++|++||++||++||++||++++++.. T Consensus 1 ~~~~~~~~~~~p~~~e~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~V~acV~~IA~~iA~lpl~l~~~~~~ 76 (518) T protein:vir:10 1 MLLANGQTLSAPAMAELSPQMQ----DSYYYAPAVGMQLERQFSLYGGIYKNQPWVRTVIAKRAQALARLPVKCMFTSGD 76 (518) T ss_pred CcccCceeecCchhhhhhhhhh----cccccccccceecccccchhhHHHhhhHHHHHHHHHHHHhhccCceEEEEEcCC Confidence 43321 111110001111111 1111111111 12234455678999999999999999999999999986432 Q ss_pred ----ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc Q lcl|Aclame:pro 76 ----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) Q Consensus 76 ----~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~ 151 (409) ..++..++|+.+||++||+++||+.++.+++++||+|+++.|+..|++.+|+|++|..|++..+.++....|.+.. T Consensus 77 ~~~~~~~~~~~~Ll~~PN~~~t~~~F~~~lv~~lll~Gnay~~i~r~~~G~~~~L~~l~p~~v~v~~~~~~~~~~y~~~~ 156 (518) T protein:vir:10 77 TETEESDTGYAKLLADPCEYLDPFAFWEWVASTLDIYGETYLAIQKNKSGTPEKLMPMHPSRVAIKRNSRTGRYEYYFQA 156 (518) T ss_pred CceeccchHHHHHHcCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCCceEEEEcCCCCEEEEEEEe Confidence 2345567788899999999999999999999999999999999999999999999999999998887777777765 Q ss_pred CCC---eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHH Q lcl|Aclame:pro 152 ATG---NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVL 226 (409) Q Consensus 152 ~~g---~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (409) ..+ +.+.|+++||||+|++++.+..+|+||+.++...+.+..++++++.+++.++ ++++++.++.+++++.++++ T Consensus 157 ~~~~~~~~~~~~~~eViHir~~s~dg~~~G~spi~~a~~~i~~~~a~~~~~~~~f~ng~~p~gil~~~~~ls~e~~~~~k 236 (518) T protein:vir:10 157 GAGVGTQLVSFADDEVVPIRFFNPDGLERGLSLMESLKSTIFSEDSSRNATAAMWKNAGRPNLVLRHEKRLSEAAQQRLR 236 (518) T ss_pred cCCccceEEEecCCcEEEecCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCccEEEecCCCCCHHHHHHHH Confidence 443 5678999999999998887767899999999999999999999998877765 67788999999999999999 Q ss_pred HHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 227 EDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 227 ~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) +.|++.++ |+|+++|+++|++|++++++++|+||+|.+++++++||++|||||.+||..+.++++|.|++.+.|+++ T Consensus 237 ~~~~~~~~G~~nag~v~vL~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~lg~~~~~t~sn~eq~~~~f~~~ 316 (518) T protein:vir:10 237 EQFDRAHSGSSNTGKTMVVEEGMEPIPLQLTAVEMQFIEARQLNREEVCGVYDIAPPIVHILDRATFSNISAQMRAFYRD 316 (518) T ss_pred HHHHHHhcCccccCcceEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhccCCCCCchhHHHHHHHHHHH Confidence 99999885 578899999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCEEe Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDKPL 381 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~~~ 381 (409) ||.|++++||++||++|++..+ .+++++||++.+++.|.+++++++.+++++|++|+||+|+++|+||++ |||+++ T Consensus 317 tL~P~l~~ie~~ln~~L~~~~~--~~~~~~fd~~~llr~D~~~r~~~~~~~~~~G~lT~NE~R~~~Gl~pie~~~gD~~~ 394 (518) T protein:vir:10 317 TMAIPIARIQSAMDKYVGQYWV--RKNRMKFDIDDVIQPDWEAKSESTQKMVNSGVATPNEGREIMGLPRSDDPKADELY 394 (518) T ss_pred HHHHHHHHHHHHHHHhhccccc--CCceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeee Confidence 9999999999999999998754 467899999999999999999999999999999999999999999995 899999 Q ss_pred ecccccchhcccccccccCCCCC-C------------CC---CC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDK-N------------VN---ES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~-n------------~~---~~ 409 (409) +++|++|++...... .+|++. . ++ .. T Consensus 395 ~~~n~~pl~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 436 (518) T protein:vir:10 395 ANSALQPLGATPDGA--VEGEEAPAPKRPASTPVASLDQSPPTS 436 (518) T ss_pred ecccceecccccccc--cCCCCCCCCCCCCcccccccccccccc Confidence 999999986543321 111110 0 00 00 No 39 >protein:vir:1326 Length: 457 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047925;swissprot:trembl:q9zxb2;genbank:gi:9631143;uniprot:Q9ZXB2;genbank:GeneID:2715872 Probab=100.00 E-value=7.2e-88 Score=498.32 Aligned_cols=406 Identities=18% Similarity=0.254 Sum_probs=331.5 Q ss_pred Ccch-hhhhhhhhhhhcccccCcccccc-cc--cccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-- Q lcl|Aclame:pro 1 MAKE-NIVTRIKKKLIDNWIDQSASKLY-DF--SPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-- 74 (409) Q Consensus 1 M~~~-~~~~r~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 74 (409) |++. +||+|...+.............. .+ ......++..|+.+.++++++|++||++||++||++|++++++.. T Consensus 1 Mg~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~~~~al~~~~V~~~v~~Ia~~iA~lp~~~~~~~~~~ 80 (457) T protein:vir:13 1 MGFWSALFGRGHSPALDGIEARAWEPYDPSIYNLGAVAASGETVTPHDALQVSAVFASVRLLSETIATLPLSTYSKRGGS 80 (457) T ss_pred CchhhhhhcccccccccccccccccccchHHHhhcccccCCceechHHhhccHHHHHHHHHHHHhhccCceEEEEecCCc Confidence 9984 45666555433333222211111 01 112344567889999999999999999999999999999998643 Q ss_pred ---cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce---eE-- Q lcl|Aclame:pro 75 ---VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE---LY-- 146 (409) Q Consensus 75 ---~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~---~~-- 146 (409) ...+.+..+|+.+|| +||+++||+.++.+++++||+|++|.++ .|++.+|+||+|..|++..+..+.. .+ T Consensus 81 ~~~~~~~~l~~~ln~~~n-~~t~~~f~~~~~~~lll~Gna~~~i~~~-~g~~~~l~~l~p~~v~v~~~~~~~~~~~~~~~ 158 (457) T protein:vir:13 81 RKEIVTPEWLDYPNAEPG-GMGRIDILSQTVLSLLLQGNAFLAVRWQ-GPNIVGLDVLDPTKIHVHMVMVDGLRRKVFEA 158 (457) T ss_pred ccccccchHHHhccccCC-CCCHHHHHHHHHHHHhhcCCeEEEEEec-CCcEEEEEEEccCceEEEEecCCCccceeEEE Confidence 334567777776666 7999999999999999999999999776 5899999999999999987655432 22 Q ss_pred EEEEcCCC--eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHH Q lcl|Aclame:pro 147 YSIHAATG--NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKR 222 (409) Q Consensus 147 ~~~~~~~g--~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 222 (409) |.+....+ ....|++++|||++.+++.+.++|+||+.++...|.++.++++++.+++.++ ++++++.++.++++++ T Consensus 159 y~~~~~~~~~~~~~~~~~diih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~ls~e~~ 238 (457) T protein:vir:13 159 YDIDADGNEVLLGWFTPRDVLHIPGMMLPGDFVGCSPISYARESIGLALAAQKYGSKFFANGAMPGAVVEVPGTMSEEGL 238 (457) T ss_pred EEEecCCceeeEEeeCccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcCCCCCHHHH Confidence 33333222 2346889999999999888889999999999999999999999998877664 6788999999999999 Q ss_pred HHHHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc--ccHHHHH Q lcl|Aclame:pro 223 QQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF--AKNEELN 297 (409) Q Consensus 223 ~~~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~--~~~e~~~ 297 (409) ++++++|++.++ |+|+++|+++|++|+++++++.|+||+|.+++++++||++|||||.+||..+.+++ +|.|++. T Consensus 239 ~~~~~~~~~~~~g~~nag~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~sn~eq~~ 318 (457) T protein:vir:13 239 ARAREAWRAANSGVDNAHRVALLTEGAKFSKVAMSPDEAQFLQTRQFQVPEIARIFGVPPHLISDATNSTSWGSGLAEQN 318 (457) T ss_pred HHHHHHHHHHhcCccccCcceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCCCCcccccchHHHHH Confidence 999999999885 46899999999999999999999999999999999999999999999998777654 7899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 298 RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG 377 (409) Q Consensus 298 ~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g 377 (409) +.|++++|.|++++||++||++|+++.++ .+.+++||++++++.|.+++++++.+++++|+||+||+|+++|+||+||| T Consensus 319 ~~f~~~tl~P~~~~ie~~ln~~L~~~~~~-~~~~i~fd~~~l~~~D~~~r~~~~~~~~~~G~~T~NE~R~~~gl~Pi~~g 397 (457) T protein:vir:13 319 IAFTMFSLRPWLERIEAGFNRLLFAETAD-RFRFVKFNLDEIKRGAPKERMELWSLGLQNGIYSIDEVRAAEDMTPLPDG 397 (457) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcccc-CceeEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 99999999999999999999999998765 57889999999999999999999999999999999999999999999987 Q ss_pred --CEEeecccccchhccccccccc-----------------CCCCCCCCCC Q lcl|Aclame:pro 378 --DKPLISGDLYPIDTPLELRKSL-----------------KGGDKNVNES 409 (409) Q Consensus 378 --d~~~~~~n~~~~~~~~~~~~~~-----------------~gg~~n~~~~ 409 (409) |++++|+|+.+++...+.+... +.|..+++++ T Consensus 398 ~~d~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~~~ 448 (457) T protein:vir:13 398 LGEKYRVPLNLGEVGEEPEPEPAPAPPAIEPPAEEPDEEPEPEGKPDDEGA 448 (457) T ss_pred cccceeeccccccccccccccccCCCCCCCCCccccCCCCCCCCCCccccC Confidence 9999999999886644322110 1111111111 No 40 >protein:vir:3868 Length: 417 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680485;swissprot:trembl:q8ltc2;genbank:gi:22296525;interpro:IPR006427;interpro:IPR006944;uniprot:Q8LTC2;genbank:GeneID:951699 Probab=100.00 E-value=3.2e-87 Score=494.79 Aligned_cols=393 Identities=19% Similarity=0.255 Sum_probs=324.4 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc---ccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK---VVN 77 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~---~~~ 77 (409) |+++.-+. ... ...|... ..+++...+.++. ++...++++++||+||++||++||++|++++++.. ... T Consensus 1 m~~~~~~~--~~~-~~~~~~~----~~~~~~~~~~~g~-~~~~~Al~~~~V~~cv~~ia~~iA~lp~~~~~~~~~~~~~~ 72 (417) T protein:vir:38 1 MKLFRGLA--TEV-DPHWADH----LLDSGVIPSFRGG-YLGISALRNSDVLTAVSIVSGDVSRFPLVITDSSTDEVIDL 72 (417) T ss_pred Cccccccc--cCC-Cccchhh----hcccccccccCCc-eechhhcccHHHHHHHHHHHHhhccCeeEEEEcCCcceecc Confidence 99852111 111 1112111 1122222222222 23456899999999999999999999999998653 335 Q ss_pred chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC-CceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeE Q lcl|Aclame:pro 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY-HQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNK 156 (409) Q Consensus 78 ~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~-G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~ 156 (409) +++.++|+.+||++||+++||+.++.+++++||+|++++|+.. |.|.+|+|++|+.|++..+..+.+.+++.....+.. T Consensus 73 ~~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~y~~i~r~~~g~~~~~l~~l~p~~v~v~~~~~~~~~y~~~~~~~~~~ 152 (417) T protein:vir:38 73 ANIEYLMNTKVNKRLSAYQWKFPMMVNAILTGNAYSRIVRDPITNEPAMFEFYAPSQTQVDTSDPDNIIYRFTPYNSSMQ 152 (417) T ss_pred chHHHHHhcccCcCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCEEEEEEEeCCceEEEEEcCCCeEEEEEEEcCCcEE Confidence 6888999999999999999999999999999999999999864 679999999999999988877766544333444556 Q ss_pred EEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 157 LIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYYE 234 (409) Q Consensus 157 ~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (409) ..++++||||||++ +.++++|+||+.++..++.++.+++++..+++.++ ++++++.++.+++++.++++++|++.++ T Consensus 153 ~~~~~~dviH~r~~-~~d~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~l~~e~~~~~~~~~~~~~~ 231 (417) T protein:vir:38 153 KVCGFEDVIHWKFF-SYDTIMGRSPLLSLGDEIGLQESGVSTLQKFFKSGLKGSIIKAKESRLSAEARQKIREDFERAQA 231 (417) T ss_pred EEecCcceEEecCC-CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCCcEEEEeCCCCCHHHHHHHHHHHHHHhc Confidence 77899999999986 45789999999999999999999999988877664 6788999999999999999999999885 Q ss_pred --CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 --ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQY 312 (409) Q Consensus 235 --~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~i 312 (409) |+|+++|+++|++|++++++++|+||+|.+++++++||++|||||++||. .+++++.+++.+.|+++||.|++++| T Consensus 232 g~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~--~~~~s~~e~~~~~~~~~tl~P~~~~i 309 (417) T protein:vir:38 232 GADAGSPIIVDATMDYQPLEVDTNVLNLINSNNYSTAQIAKALRVPAYRLAQ--NSPNQSVKQLADDYIRNDLPFYFEPI 309 (417) T ss_pred ccccCCceeccCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHhCC--CCcchhHHHHHHHHHHHHHHHHHHHH Confidence 57899999999999999999999999999999999999999999999974 56889999999999999999999999 Q ss_pred HHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC--CEEeecccccchh Q lcl|Aclame:pro 313 EEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG--DKPLISGDLYPID 390 (409) Q Consensus 313 e~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g--d~~~~~~n~~~~~ 390 (409) |++||++||++.++. +.+++||++.+.+.+. ..+++++++|+||+||+|+++|+||+||| |++++|+|++|++ T Consensus 310 e~~l~~~Ll~~~~~~-~~~~~fd~~~l~~~~~----~~~~~~~~~G~~T~NE~R~~~gl~pi~~g~~d~~~~~~n~~~~d 384 (417) T protein:vir:38 310 TSEFELKLLDDAQRH-QYCIGFDTKSVNGLPI----ADVNTAVNGGLWTGNEGRAELGKKPLKDPNMDRIQSTLNTVFLD 384 (417) T ss_pred HHHHHhhhcChhhcc-cceEEechhhhhHHHH----HHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeeecccccccc Confidence 999999999987764 6889999988765543 34678899999999999999999999886 8899999999998 Q ss_pred cccccc----cccCCCCCCCCCC Q lcl|Aclame:pro 391 TPLELR----KSLKGGDKNVNES 409 (409) Q Consensus 391 ~~~~~~----~~~~gg~~n~~~~ 409 (409) ...+.+ ...|||++|.+++ T Consensus 385 ~~~~~~~~~~~~~kgg~~~~~~~ 407 (417) T protein:vir:38 385 QKEAYQAEHAAELKGGDTNAKGN 407 (417) T ss_pred cccccccccccccCCCCCCCCCC Confidence 765533 3457777665555 No 41 >protein:vir:9702 Length: 406 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795464;genbank:gi:28876227;genbank:GeneID:1257772 Probab=100.00 E-value=4.4e-87 Score=494.04 Aligned_cols=391 Identities=18% Similarity=0.215 Sum_probs=328.7 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc--cccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--VVNT 78 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~--~~~~ 78 (409) |+|++-++. .. ..... ....+ +.+.....++...++++++||+||++||++||++|+++++++. ..+| T Consensus 1 m~~f~~~~~--~~-----~~~~~-~~~~~--~~~~~~~~~~~~~Al~~~~V~~~i~~Ia~~iA~lp~~~~~~~g~~~~~~ 70 (406) T protein:vir:97 1 MSFFQPLGT--SK-----VSYDD-YISSV--LAGDVSQKYLGVSALKNSDILTATSIIAGDIARFPLVKKDVNGDIIHDE 70 (406) T ss_pred CccccccCC--CC-----CCcch-HHHHH--hcCCCCcccccchhhccHHHHHHHHHHHHhhhhCeeEEEecCccccccc Confidence 999753221 11 00000 00011 1112223445557899999999999999999999999987653 3468 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC-CCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEE Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKL 157 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~-~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~ 157 (409) ++.++|+.+||++||+++||+.++.+|++.||||+++.|+. .|.+.+|+|++|+.|++..++++.+.|.+.....|..+ T Consensus 71 ~~~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gnay~~i~r~~~~g~~~~L~~i~p~~v~v~~~~~~~~~y~~~~~~~~~~~ 150 (406) T protein:vir:97 71 DINYLLNVKSTSNASARTWKFAMAVNAILTGNSFSRILRDPKTNQALQFQFYRPSETTVEETDNHEIVYTFTDMLTAKQV 150 (406) T ss_pred hHHHHhhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCCeEEEEEEECCCeeEEEEcCCceEEEEEEecCCceEE Confidence 89999999999999999999999999999999999999985 68999999999999999988777665544446677888 Q ss_pred EEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCC--CceeEEecCCcCCHHHHHHHHHHHHHHhc- Q lcl|Aclame:pro 158 IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYGSNVSTEKRQQVLEDFKQYYE- 234 (409) Q Consensus 158 ~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (409) .++++||||+|++ +.++++|+||+.++..++.++.+++++..+++.+ ++++++..++.+++++.++++++|++.++ T Consensus 151 ~~~~~evih~r~~-~~dg~~G~spi~~~~~~i~~~~a~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g 229 (406) T protein:vir:97 151 KCFAHDVIHWKFF-SHDTILGRSPLLSLGDEIDLQTGGINTLIKFFKDGFSSGILTMKGAQLSGDARQRARQEFEKMREG 229 (406) T ss_pred EEccccEEEecCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEecCCCCCHHHHHHHHHHHHHHhcc Confidence 9999999999976 4677889999999999999999999998877655 46778888999999999999999999885 Q ss_pred -CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 -ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYE 313 (409) Q Consensus 235 -~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie 313 (409) ++|+++|+++|++|++++++++|+|++|.+++++++||++|||||.+||. .+++++.+++.+.|+.+||.|++++|| T Consensus 230 ~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~afgVPp~~lg~--~~~~~~~e~~~~~f~~~~l~P~~~~ie 307 (406) T protein:vir:97 230 SVGGSPLVFDSTMEYTPLEIDTNVLQLITSNNFSTAQIAKALRVPSYKLGV--NSPNQSVAQLMEDYVTNDLPFYFDAIT 307 (406) T ss_pred cccCceeecCCCceEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCHHHcCC--CCCcchHHHHHHHHHHHHHHHHHHHHH Confidence 56889999999999999999999999999999999999999999999985 456789999999999999999999999 Q ss_pred HHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeecccccchhc Q lcl|Aclame:pro 314 EEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGDLYPIDT 391 (409) Q Consensus 314 ~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~~~~ 391 (409) ++|+++|+++.++ .+.+++||++++ .+.+++.+.+++++|+||+||+|+++|+||+++ ||++++|+|++|++. T Consensus 308 ~~l~~kll~~~~~-~~~~i~fd~~~~----~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~~~gD~~~~~~n~~~~~~ 382 (406) T protein:vir:97 308 SELGLKTLNDKDR-RLYHIEFDTRSV----TGRNVDEIVKLVNNQILTPNQGLVELGKQKSTDPNMDRYQSSLNYVFLDK 382 (406) T ss_pred HHHhhhhcChhhc-cceeEEEecCcc----chhhHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeEeeccCccchhc Confidence 9999999998765 467899998764 445567788899999999999999999999965 999999999999988 Q ss_pred ccccc----cccCCCCCCCCCC Q lcl|Aclame:pro 392 PLELR----KSLKGGDKNVNES 409 (409) Q Consensus 392 ~~~~~----~~~~gg~~n~~~~ 409 (409) ..+.+ ...+|||+|++++ T Consensus 383 ~~~~~~~~~~~~~gg~~~~~~~ 404 (406) T protein:vir:97 383 KEEYQDKVGIKGKGGEVNAEED 404 (406) T ss_pred ccccccccccccCCCCCCCCCC Confidence 76544 3457888777777 No 42 >protein:vir:81218 Length: 423 # NCBI annotation: gp3, phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456733;genbank:gi:157168376;interpro:IPR006427;interpro:IPR006944;uniprot:Q9MBK2;genbank:GeneID:5580341 Probab=100.00 E-value=3.1e-86 Score=489.37 Aligned_cols=396 Identities=18% Similarity=0.251 Sum_probs=322.7 Q ss_pred CcchhhhhhhhhhhhcccccCccccccc--ccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc---- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYD--FSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK---- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~---- 74 (409) |++.+++++..... ......++.. .......+...+....++++|+|++||++||++||++|++++++.+ T Consensus 1 Mg~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~dg~~ 76 (423) T protein:vir:81 1 MGFLQKLGLAPSVV----ATPEPIELVGPIFESLKLSTKNMTVEQIWEDQPHLRTVTTFIARNVASLQLQAFERVEDGGR 76 (423) T ss_pred CchhHhhccccccc----cCccccccccccccccccccchhhHHHHHHhhhHHHHHHHHHHHhHhhCceEEEEEecCCce Confidence 99977765322211 1111111111 1111222223345566789999999999999999999999987432 Q ss_pred --cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC--CceeEEEeeCCcceEEEEcCCcc-eeEEEE Q lcl|Aclame:pro 75 --VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY--HQPSKLFLLNPDVVEMLIENQSR-ELYYSI 149 (409) Q Consensus 75 --~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~--G~~~~l~~l~p~~v~~~~~~~~~-~~~~~~ 149 (409) ..+|++..+|. +||++||+++||+.++.+++++||+|+++.|+.. +....++|+++..+++....++. ...|.+ T Consensus 77 ~~~~~~~~~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gna~~~i~rd~~~~~~~~~l~p~~~~~v~~~~~~~~~~~~~Y~~ 155 (423) T protein:vir:81 77 ERVREGHLARVCK-LANSDMTMYDLLERTMFDLCLYDEFFWLLPGDLGVDTPTLDIRPIPVSWVQRRAYKDGWGSLDYII 155 (423) T ss_pred eeeccchHHHHhh-cCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCcCcceEEEeecccceeeeeeccCCCcceEEEE Confidence 23566776765 8999999999999999999999999999998753 45678889999888877655542 333443 Q ss_pred E---cCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecC-----CcCCH Q lcl|Aclame:pro 150 H---AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYG-----SNVST 219 (409) Q Consensus 150 ~---~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~~ 219 (409) . ..+|..+.+++++|||+|.+++.+..+|+||+..+..++....++++++.+.+.++ ++++++.+ +.+++ T Consensus 156 ~~~~~~~g~~~~~~~~evih~r~~~~~~~~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gvi~~~~~~~~~~l~~ 235 (423) T protein:vir:81 156 IESGDNDGRSVKVPGERVIHRHGYNPKTMKRGKSPVQSLRDILGEQIEAAIFRAQMWRNGPRPGMVIMRDPESKAGKWDA 235 (423) T ss_pred EEecCCCceEEEEcccceEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcccCccCCH Confidence 2 34677889999999999999888888999999999999999999999988877664 56666543 45899 Q ss_pred HHHHHHHHHHHHHhc----CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH Q lcl|Aclame:pro 220 EKRQQVLEDFKQYYE----ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE 295 (409) Q Consensus 220 ~~~~~~~~~~~~~~~----~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~ 295 (409) +++++++++|++.++ ++|+++|+++|++|++++++++|+||+|.++++.++||++|||||.+||..++++++|.|+ T Consensus 236 e~~~~~~~~~~~~~~~~~~n~g~~~vl~~g~~~~~l~~s~~d~q~~e~~~~~~~eIa~~fgVPp~~lg~~~~~t~sn~e~ 315 (423) T protein:vir:81 236 ESRTRFMANLRASFSPKSSDVGGTLLLEDGMKAENFHTTSKDEQTVETTKLSLQTVAQVYGINPTMVGQLDNANYSNVRE 315 (423) T ss_pred HHHHHHHHHHHHHhccccccCCcceecCCCceEEeccCChhhHHHHHHHHhhHHHHHHHhCCCHHHhcCCCCCCcccHHH Confidence 999999999999873 4689999999999999999999999999999999999999999999999988999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhhc-cccceEEecchhhhhhhHHHHHHHHHHHHh-cCCcCHHHHHHHhCCCC Q lcl|Aclame:pro 296 LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR-EKNRYFKFNVKSYLRADSATQAEVYFKAVR-SGYYTINDIREWEDLPP 373 (409) Q Consensus 296 ~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~-~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~-~g~~T~NE~R~~~g~~p 373 (409) +.+.|++++|.|++++||++||++|+++.+. ..+++++||++++++.|.+++++.+.+++. +|+||+||+|+++|+|| T Consensus 316 ~~~~f~~~~L~P~~~~ie~~l~~~L~~~~~~~~~~~~~~fd~~~llr~d~~~r~~~~~~~l~~~G~~T~NE~R~~~gl~p 395 (423) T protein:vir:81 316 FRKALYGDNLGSWIRIIQDVMNLFLLPRVGIDNEKFYFEFNLEEKLRASFEEAAEIKRAAVGNVAWMTINEVRAMDNLPS 395 (423) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCccccccCccEEEecchhhhccCHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCC Confidence 9999999999999999999999999998664 467899999999999999999999999885 69999999999999999 Q ss_pred CCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 374 VEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 374 ~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +||||++++|.|+.+.+.... ..++.|| T Consensus 396 ~~gGD~~~~p~n~~~~~~~~~--------~~~~~~t 423 (423) T protein:vir:81 396 IDGGDDLARPLNTEFGDSEDA--------PGEEVET 423 (423) T ss_pred CCCcceeecccccccCccCCC--------CCCCCCC Confidence 999999999999987654221 1122233 No 43 >protein:vir:101647 Length: 460 # NCBI annotation: phage portal protein # Family: family:all:26542 # MgeID: mge:1646 # MgeName: 11b # Cross-refs: genbank:acc:YP_112492;genbank:gi:53793592;uniprot:Q5ZGG1;genbank:GeneID:3101755 Probab=100.00 E-value=1.9e-84 Score=479.59 Aligned_cols=399 Identities=13% Similarity=0.160 Sum_probs=322.4 Q ss_pred chhhhhhhhhhhhcccccCcccccccccc-cC--CCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccc--- Q lcl|Aclame:pro 3 KENIVTRIKKKLIDNWIDQSASKLYDFSP-WK--NKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVV--- 76 (409) Q Consensus 3 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~--- 76 (409) ..|+++|...+....-.......+-.++. ++ +.++..++.+.++++|+||+||++||+++|++||++++..... T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~v~~~v~~ia~~iA~lp~~v~~~~~~g~~~ 80 (460) T protein:vir:10 1 MANRIIRALRELTGLDNKFNDAFIKYIGQTFTKYDNNGKTYLEQGYNINPDVYSCISQMAAKTVAVPYTIKVVKDTKAYQ 80 (460) T ss_pred CchhHHHHHhhhhccCCCchHHHHHhhccccCCCccchhhhhHHHHhcchHHHHHHHHHHHhhhhCceEEEeccCCccch Confidence 44556665433211100000001000011 11 2345567888899999999999999999999999999865322 Q ss_pred -----------------------------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC----CCce Q lcl|Aclame:pro 77 -----------------------------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI----YHQP 123 (409) Q Consensus 77 -----------------------------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~----~G~~ 123 (409) .+++..+|+.+||++||+++||+.++.+++++||||++++|+. .|.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~~~~~G~~ 160 (460) T protein:vir:10 81 QLNNLNISTKGLYSFTQSLQKNRLDTKAFSETEKAFPLESPNPTQTWADIYSLYKTYMRLNGNCYFYLMSPDDGINAGVP 160 (460) T ss_pred hhhhhhhhhhhhHHHHHHhhcchhhhcccchhHHHHHHhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEecCCCccCcee Confidence 2345567888999999999999999999999999999999964 4789 Q ss_pred eEEEeeCCcceEEEEcCCcceeEEEE------EcCCCeEEEEccceEEEecCcCcc-----cccccccHHHHHHHHHHHH Q lcl|Aclame:pro 124 SKLFLLNPDVVEMLIENQSRELYYSI------HAATGNKLIVHNMDMLHFKHIVAS-----NMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 124 ~~l~~l~p~~v~~~~~~~~~~~~~~~------~~~~g~~~~~~~~~vih~~~~~~~-----~~~~G~sp~~~~~~~i~~~ 192 (409) .+|+||+|+.|++..+.++....|.+ ...+|....|+++||||||.+++. ++.+|+||+..+...+.++ T Consensus 161 ~~L~~l~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~evih~r~~~~~~~~~~~~~~G~sp~~~~~~~i~~~ 240 (460) T protein:vir:10 161 SQMYVLPAHLIKIVLKDDINLLSTDSPIKSYMLIQGDQFIEFNEDEVIHTKYANPNFDLQGSHLYGMSPIRAILRNINSQ 240 (460) T ss_pred EEEEEEcCceEEEEEcCCCceeeeeeeeeEEEEecCceeEEecccceEEEecCCCCcccccCccccccHHHHHHHHHHHH Confidence 99999999999999988876544321 234577789999999999987665 4578999999999999999 Q ss_pred HHHHHHHHHhcCC--CceeEEecCCcCCHHHHHHHHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 193 NAVRTFNLTEMQK--PDSFMLKYGSNVSTEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLT 267 (409) Q Consensus 193 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~ 267 (409) .++++++...+.+ .++++++.++.+++++++++++.|++.++ |+|+++++++|++|+++++++.|+|++|.++++ T Consensus 241 ~~~~~~~~~~f~ng~~~~~i~~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~ 320 (460) T protein:vir:10 241 NSTIDNNVKTMQNGGVFGFIHGGSTGLTQPQADSLKQRLTEMDKSPDRLSQIAGASGEIAFTKISLNTDELKPFDYLKYD 320 (460) T ss_pred HHHHHHHHHHHhcCCCcceeeecCCCCCHHHHHHHHHHHHHHhcCccccCCceecCCCceEEEccCChhHHHHHHHHHHH Confidence 9999998877665 46788999999999999999999999885 568899999999999999999999999999999 Q ss_pred HHHHHHHhcCChhhcCCccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhh--hhh Q lcl|Aclame:pro 268 RERVANVFQLPSIFLNARSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYL--RAD 343 (409) Q Consensus 268 ~~~Ia~~fgvp~~~l~~~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~--~~d 343 (409) +++||++|||||++||..+. +++++.|++.+.|++++|.|++++||++||++|+++.+...+++++||++.+. +.+ T Consensus 321 ~~~Ia~~fgVPp~~lg~~~~~t~~~sn~e~~~~~f~~~~l~P~~~~ie~~ln~kl~~~~~~~~~~~i~~d~~~l~~l~~d 400 (460) T protein:vir:10 321 QKAICNALGWSDKLLNNNEGGGLNTGNLEEERKRVVTDNIQPDLVILKQAFDKKFIKRFKGYENAVIEWDISELPEMQTD 400 (460) T ss_pred HHHHHHHhCCCHHHhCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCceEEeecchhhhHHHH Confidence 99999999999999998654 46899999999999999999999999999999999988888999999999873 444 Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHhCCCCC--CCCCEEeecccccchhcccccccccCCCCCCCCC Q lcl|Aclame:pro 344 SATQAEVYFKAVRSGYYTINDIREWEDLPPV--EGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 344 ~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~--~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~ 408 (409) .++ ...++++|++|+||+|+++|+||+ ||||++++|+|++|++...+. ...+.+|.+. T Consensus 401 ~~~----~~~~~~~g~~T~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~~~~~~---~~~~~~nq~~ 460 (460) T protein:vir:10 401 MVA----MASWLNTIPVTPNEIRIAMKYETLNQDGMDIVFMPSNKVRIDDVSNN---LIDSAFNQNQ 460 (460) T ss_pred HHH----HHHHHhCCCCCHHHHHHHhCCCCCCCCCCCeeeecccccchhhcccc---cCCCcccCCC Confidence 443 445778999999999999999998 589999999999999875432 1222222222 No 44 >protein:vir:102727 Length: 945 # NCBI annotation: portal protein # Family: family:all:2446 # MgeID: mge:1610 # MgeName: YS40 # Cross-refs: genbank:acc:YP_874016;genbank:gi:118197623;genbank:GeneID:4495919 Probab=100.00 E-value=2.8e-83 Score=473.19 Aligned_cols=405 Identities=13% Similarity=0.142 Sum_probs=317.7 Q ss_pred Ccchhhhhhhhhhhhc---ccccCccccccccccc---CCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLID---NWIDQSASKLYDFSPW---KNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 74 (409) |++.+|...++.+... +.+............. .......++.+.++++++|++||++||++||++|++++++.+ T Consensus 71 ~kk~~i~~pfkkk~~~~~~d~f~~s~es~s~vtsls~pdaf~~vnVs~~~AlknsaV~scI~~IA~sIAsLPlklYrr~e 150 (945) T protein:vir:10 71 LKKEKIIVPYNHQEPPFKFNLFEYSPESLMYLPSISDPDAFFLINLFRKYRFNNDSKLIKVSEIPKKLTSKELEIYKHIE 150 (945) T ss_pred HHhhcccccccccccchhhhhhhccCccceecccccCccceeeehhhhhhhhccHHHHHHHHHHHhhhccCceEEEEecc Confidence 6777776665543321 1111111111111111 111234567888999999999999999999999999998643 Q ss_pred c-----------ccchhhhhhhccccCCCCHHH----HHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEc Q lcl|Aclame:pro 75 V-----------VNTEVSDLLTVSPNNSLSSFD----FINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIE 139 (409) Q Consensus 75 ~-----------~~~~~~~~L~~~pn~~~s~~~----f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~ 139 (409) . ..|++..+|+ +||++||+++ |+++++.+++++||+|+++.|+..|++.+|+|++|++|++..+ T Consensus 151 dG~~~~~~kk~~~~hpL~~LL~-rPNp~mT~~eFwqsFl~~Lv~dLLL~GNAYieIiRd~~G~ii~L~pLdPs~Vti~~d 229 (945) T protein:vir:10 151 DKHVNYYLKRIRDARNILEFLE-RPDPYFSEVNSWEYLLGMVLDDILTIDRGAIVKIRDEQGNLVAITPVDGTTIKPILS 229 (945) T ss_pred cCcccccccccccchHHHHHHh-CCCcccChhHHHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCcceEEEEc Confidence 3 2456667776 9999999988 5667889999999999999999999999999999999999999 Q ss_pred CCcceeEEE-EEcCCCeEEEEccceEE-EecCcCccccc--ccccHHHHHHHHHHHHHHHHHHHHHhcC-C--CceeEEe Q lcl|Aclame:pro 140 NQSRELYYS-IHAATGNKLIVHNMDML-HFKHIVASNMV--QGISPIDVLKNTTDFDNAVRTFNLTEMQ-K--PDSFMLK 212 (409) Q Consensus 140 ~~~~~~~~~-~~~~~g~~~~~~~~~vi-h~~~~~~~~~~--~G~sp~~~~~~~i~~~~~~~~~~~~~~~-~--~~~~~~~ 212 (409) ++|...+++ +...++....++++++| |++++++.+.. +|+||+.++...+..+.++++++.+.+. + .|++++. T Consensus 230 dDG~~~y~Yv~~idG~~~~~v~a~DvIlhirn~s~DG~~~GyGlSPIeaa~~aI~~alAaek~aar~FskNGa~PsGILs 309 (945) T protein:vir:10 230 EDTGIVVGYVQEVDGAIVAHFDKRDVVLFRQNLTPDVYMYGYSLPPIEILYKVILSDIFIDKGNLDYYRKGGSIPEGILA 309 (945) T ss_pred CCCcEEEEEEEecCCceEEEecCCceEEEeccCCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEE Confidence 888776544 34444445678888866 56666554433 5999999999999999999999877663 2 3566664 Q ss_pred c----------CCcCCHHHHHHHHHHHHHHhc--CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChh Q lcl|Aclame:pro 213 Y----------GSNVSTEKRQQVLEDFKQYYE--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSI 280 (409) Q Consensus 213 ~----------~~~~~~~~~~~~~~~~~~~~~--~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~ 280 (409) . ++.+++++++++++.|++.++ ++|+++++++|++|+++++++.|+|++|.+++++++||++|||||+ T Consensus 310 vkg~~~~d~k~~~~LseEq~erlKe~wee~~sG~NnG~piVLdeGmef~pLs~s~~DaQfLEsrkfs~eeIArAFGVPP~ 389 (945) T protein:vir:10 310 IEPPSYKEGDIYPQLSREQLESIQRQLQAIMMGDYTQVPILSGGKFTWIDFKGKRRDMQFKELAEFVARKICAVYQVSPQ 389 (945) T ss_pred ecCccccccccccccCHHHHHHHHHHHHHHhCCcccccceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHH Confidence 3 466899999999999999885 4577889999999999999999999999999999999999999999 Q ss_pred hcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 281 FLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYY 360 (409) Q Consensus 281 ~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~ 360 (409) +||..+.+++++.|++...|++++|.|++++||++||++|+... .+..++|+++.....|.+++++++.+++++|+| T Consensus 390 lLG~~e~st~SNiEqq~~~Fv~~tL~Pil~~IEqeLNrkLl~~~---eg~~i~fdFd~ldl~D~ksraEal~kli~sGiL 466 (945) T protein:vir:10 390 DVGILEGSNKATAEVMASLTKAKGLEPLMATISKGFDEVVSEFR---NEKDIKLWFKEDDLEKERDWWNIIQGQLNTGFR 466 (945) T ss_pred HcccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCceeEEEecchhccCHHHHHHHHHHHHhCCCc Confidence 99998889999999999999999999999999999999987543 244455666666677889999999999999999 Q ss_pred CHHHHHHHhCCCCCCCCCEEeeccc-ccchhcccc---------------cccccCCCCCCCCCC Q lcl|Aclame:pro 361 TINDIREWEDLPPVEGGDKPLISGD-LYPIDTPLE---------------LRKSLKGGDKNVNES 409 (409) Q Consensus 361 T~NE~R~~~g~~p~~~gd~~~~~~n-~~~~~~~~~---------------~~~~~~gg~~n~~~~ 409 (409) |+||+|+++|+||+||||+++++.+ +.|.+.... .+...+||+.++++. T Consensus 467 TiNEvRe~lGLpPIeGGD~lli~~nn~~P~d~~~ka~~ga~p~q~aq~~~dqp~~kGGe~dEns~ 531 (945) T protein:vir:10 467 SINEARMEKGLEPVPWGDVPFSGLRNWKPEDEQAKAQQGAMPPQLAQAMADQPSQQGGGVDENSS 531 (945) T ss_pred CHHHHHHHhCCCCCCCcceeeeccccccccccccccccCCCCcccccCCCCCCCCCCCCCCCCCC Confidence 9999999999999999999999874 556544221 123345555554433 No 45 >protein:vir:95378 Length: 406 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764474;genbank:gi:115334628;genbank:GeneID:5179265 Probab=100.00 E-value=3.8e-83 Score=472.42 Aligned_cols=389 Identities=22% Similarity=0.250 Sum_probs=327.3 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc----c Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV----V 76 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~----~ 76 (409) |++++.|.+.+.+...... ......|......+...++...++++++|++||++||++||++||++++..+. . T Consensus 1 Mg~f~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~ia~~ia~~~~~~~~~~~~~~~~~ 77 (406) T protein:vir:95 1 MGLFDRWRRTKRKSKIRAD---TGYVGLFMSGEDVSFLVPGYVRLSDNPEVRMAVHKIADLISSMTIYLMQNTEDGDIRI 77 (406) T ss_pred Ccchhhhcccccccccccc---chhhhhhccCcccCccccCHHHHhhcHHHHHHHHHHHHhhccCceEEEEecCCcceee Confidence 9999887765543221111 11111122223334556677889999999999999999999999999976543 3 Q ss_pred cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCe--EEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCC Q lcl|Aclame:pro 77 NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNA--YVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG 154 (409) Q Consensus 77 ~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a--~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g 154 (409) .+++.++|+.+||++||+++||++++.+++++|++ |+++.|+..|.+.+||||+|.+|++..+.++.. +.. ++ T Consensus 78 ~~~~~~~l~~~PN~~~t~~~f~~~~~~~~ll~g~g~a~~~~~~~~~g~~~~l~~i~~~~v~~~~~~~~~~----~~~-~~ 152 (406) T protein:vir:95 78 RNELSRKIDITPYSLMTRKSWMYNIVYTMLLDGEGNSVVFPKYTADGLIDELVPLTPSKVNFLDTPDGYQ----VLY-GG 152 (406) T ss_pred cchHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCceEEEEEEECCCCcEEEEEEEcCceeEEEEcCCeEE----EEe-cc Confidence 57889999999999999999999999999999765 667789999999999999999999999887633 222 12 Q ss_pred eEEEEccceEEEecC-cCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKH-IVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQ 231 (409) Q Consensus 155 ~~~~~~~~~vih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (409) ..|+++||||+++ .++.++++|.||+..+..++.+..++++++...+.++ ++++++.++.+++++.++++++|.+ T Consensus 153 --~~~~~~evih~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~l~~e~~~~~~~~~~~ 230 (406) T protein:vir:95 153 --QTFNYDEVLHFIYNPDPERPYIGRGYRVVLKDIADNLKQATATKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVFK 230 (406) T ss_pred --EEEchhHEEEeeccCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHH Confidence 4689999999996 4667889999999999999999999999998877664 6788899999999999999999999 Q ss_pred Hhc---CCCceeecC-CCceeeecc-CChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 YYE---ENGGILFQE-PGVEIEPLP-KKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLL 306 (409) Q Consensus 232 ~~~---~~~~~~vl~-~g~~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~ 306 (409) .++ ++++++|+. ++.+++++. ++++|+|++|.+++++++||++|||||++||.. ++.+++...|++++|. T Consensus 231 ~~~g~~n~~~~~v~~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~-----~~~~~~~~~~~~~~l~ 305 (406) T protein:vir:95 231 KYLQATEAGQPWIIPAELLEVEQVKPLSLKDIAINEAVELDKRTVAGMFGVPAFLLGIG-----EFNRDEYNNFINSTIL 305 (406) T ss_pred HhccccccCCceeecCCCccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-----CchHHHHHHHHHHHHH Confidence 885 567787775 456777764 789999999999999999999999999999653 3468889999999999 Q ss_pred HHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccc Q lcl|Aclame:pro 307 PIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDL 386 (409) Q Consensus 307 P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~ 386 (409) |++++||++||++||++ .+.+++||++++++.|.+++++.+.+++++|++|+||+|+++|+||+||||++++|+|+ T Consensus 306 P~~~~ie~~l~~~l~~~----~~~~~~fd~~~l~~~d~~~~~~~~~~l~~~G~~t~NE~R~~~gl~p~~~gd~~~~~~n~ 381 (406) T protein:vir:95 306 PIAKGIEQELTRKLLIS----PDLYFKFNPRSLYAYDLKELAEVGSNMYVRGIMEGNEVRDWLGLSPKEGLSELVILENY 381 (406) T ss_pred HHHHHHHHHHHHhcCCC----CCcEEEeechhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeeccCc Confidence 99999999999999975 35689999999999999999999999999999999999999999999999999999999 Q ss_pred cchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 387 YPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 387 ~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +|++...+.+ ..|||+++++++ T Consensus 382 ~~~~~~~~~~-~~k~g~~~~~~~ 403 (406) T protein:vir:95 382 IPLDKIGDQS-KLKGGDNSGADG 403 (406) T ss_pred cchhhccccc-ccCCCCCCCCCC Confidence 9998876643 457888888777 No 46 >protein:vir:80134 Length: 403 # NCBI annotation: Phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425602;genbank:gi:155042935;genbank:GeneID:5469563 Probab=100.00 E-value=3.6e-83 Score=472.60 Aligned_cols=385 Identities=21% Similarity=0.282 Sum_probs=318.3 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccch-hHHhhhHHHHHHHHHHHHhhccCceeEeecccc---- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVIN-NTLETNETIFSAITKLSNSMASLPLKMYEDYKV---- 75 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~---- 75 (409) |+++++|+|......... ...+......+...+.. ..+..+|+|++||++||++||++|++++++.+. T Consensus 1 Mg~~~~f~~k~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~I~~ia~~iA~~p~~~~~~~~~g~~~ 73 (403) T protein:vir:80 1 MGLFNFFRRKTRSEPTNA-------ISWFLTQEAYDTLAIPGYTRLSDNPEVRMAVHKIAELISSMTIHLMQNTDNGDIR 73 (403) T ss_pred Ccccccccccccccccch-------hhhhcccccccccccchhhhhhhhHHHHHHHHHHHHhhhhCceEEEEecCCceee Confidence 999999887533211110 11111111111122222 235578999999999999999999999976532 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhc--CCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCC Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEK--GNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT 153 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~--G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~ 153 (409) ..+++.++|+.+||++||+++||+.++.++++. ||||+++.++..|++.+||||+|..|++..+.+|...+|. T Consensus 74 ~~~~~~~lL~~~PN~~~t~~~f~~~~v~~~ll~~~Gna~i~~~~~~~g~~~~L~~l~p~~v~~~~~~~g~~~~y~----- 148 (403) T protein:vir:80 74 IKNELSRKIDINPYSLMTRKAWMYNIVYTMLLDGEGNSVVFPKYTTSGLIDELIPLAPSKVSFVDTDTGYQIWYQ----- 148 (403) T ss_pred cCChHHHHHhccCCcCCCHHHHHHHHHHHHhhcCCccEEEEEEEcCCCcEEEEEEEcCCeeEEEEcCCceEEEEe----- Confidence 468899999999999999999999999999985 7899999999999999999999999999998888654442 Q ss_pred CeEEEEccceEEEecC-cCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHH Q lcl|Aclame:pro 154 GNKLIVHNMDMLHFKH-IVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFK 230 (409) Q Consensus 154 g~~~~~~~~~vih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 230 (409) ...++++||+|++. +++.++++|+||+.++..++....++++++...+.++ ++++++.++.+++++.++.+++|. T Consensus 149 --~~~~~~~eiih~~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~~~~~~~~~~~~ 226 (403) T protein:vir:80 149 --GKAYNYDEVLHFIVNPDPEKPYMGRGYRVVLKDIVNNLKQATTTKKSFMSGKYMPSLIVKVDAATAELSSEEGRNAVF 226 (403) T ss_pred --ecccchhhEEEEeccCCCcCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCChHHHHHHHHHHH Confidence 24688999999995 5677888999999999999999999999987777654 678888999999999999999998 Q ss_pred HHhc---CCCceeecCCC-ceeeecc-CChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHH Q lcl|Aclame:pro 231 QYYE---ENGGILFQEPG-VEIEPLP-KKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTL 305 (409) Q Consensus 231 ~~~~---~~~~~~vl~~g-~~~~~l~-~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l 305 (409) +.+. ++|++++++++ .+++++. ++++|+|++|.+++++++||++|||||++||.. ++.+++..+|+.++| T Consensus 227 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~-----~~~~~~~~~f~~~~l 301 (403) T protein:vir:80 227 KKYLEASEAGQPWIIPAELLDVEQVKPLSLKDLAIHETVELDKRTVAGIFGVPAFLLGVG-----KYDKDEYNNFINSTI 301 (403) T ss_pred HHHhhhhhcCCeeeecccccccceeccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHcCCC-----CccHHHHHHHHHHHH Confidence 8763 56788888655 4566654 688999999999999999999999999999753 233566778999999 Q ss_pred HHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccc Q lcl|Aclame:pro 306 LPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) Q Consensus 306 ~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n 385 (409) .|++++||++||++||++. +++++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||||++++++| T Consensus 302 ~P~~~~ie~~l~~kll~~~----~~~~~f~~~~ll~~d~~~~~~~~~~~~~~Gi~t~NE~R~~~gl~p~~ggd~~~~~~n 377 (403) T protein:vir:80 302 LPIAKGIEQELTRKLLISP----DLYFKFNPRSLYAYDLKELAEVGSNMYVRGLMEGNEVRDWLGLSPKEGLSELVILEN 377 (403) T ss_pred HHHHHHHHHHHHHhccCCC----CcEEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCeEeeccc Confidence 9999999999999999763 468999999999999999999999999999999999999999999999999999999 Q ss_pred ccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 386 ~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ++|++...+.+ ..||||+|+.+| T Consensus 378 ~~pl~~~~~~~-~~k~ge~~~~~~ 400 (403) T protein:vir:80 378 YIPLDKIGDQN-KLKGGEKGGADG 400 (403) T ss_pred ccchhhccchh-hccCCCCCCCCC Confidence 99998766643 467888877777 No 47 >protein:vir:94666 Length: 723 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1527 # MgeName: mu1/6 # Cross-refs: genbank:acc:YP_579205;genbank:gi:93007441;genbank:GeneID:5076785 Probab=100.00 E-value=7.8e-83 Score=470.73 Aligned_cols=386 Identities=16% Similarity=0.199 Sum_probs=316.5 Q ss_pred ccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc--cccchhhhhhhccccCCCCHHH Q lcl|Aclame:pro 19 IDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFD 96 (409) Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~--~~~~~~~~~L~~~pn~~~s~~~ 96 (409) +..-......|..|++.++.+++.+.|+++++||+||++||++||++||++++++. ...|++.++|+.+||++||+++ T Consensus 1 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~V~acV~~Ia~~iA~lpl~l~~~~~~~~~~~~l~~lL~~~PN~~~t~~~ 80 (723) T protein:vir:94 1 MTTFPSGAGGWNAWSADSVFGNGAKGWSNSAVAYRCISMLANNAASVDLVVRGPDGELDELHPLSQLWNVMPNRAMPAQV 80 (723) T ss_pred CcccccCCCccccccccccccccHHHHhhhHHHHHHHHHHHHhhccceeEEEcCCCccchhhHHHHHHhhCCCCCCCHHH Confidence 11111111234456667778888899999999999999999999999999997543 3457899999999999999999 Q ss_pred HHHHHHHHHHhcCCeEEEeeecC---CCceeEEEeeCCcceEEEEcCCcc------eeEEEEEcCCCeEEEEccceEEEe Q lcl|Aclame:pro 97 FINQIETIRNEKGNAYVLIERDI---YHQPSKLFLLNPDVVEMLIENQSR------ELYYSIHAATGNKLIVHNMDMLHF 167 (409) Q Consensus 97 f~~~~~~~~l~~G~a~~~~~~~~---~G~~~~l~~l~p~~v~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~vih~ 167 (409) ||+.++.+|++.||+|+++.|+. .|.|.+|+|++|..+.+....++. ...|.++..+|..+.++++||||| T Consensus 81 f~~~~~~~lll~Gnay~~i~r~~r~~~g~p~~l~~l~~~~~~v~~~~~~~~~~~~~~~~y~~~~~~G~~~~~~~~dIiHi 160 (723) T protein:vir:94 81 LKALSMTRLQLDGQCHLWLNYNGRTPAGVPDEIWYVYDRVTTIVATRAADAVPQAQIIGYVIERTDGVRVPVLADEMLWL 160 (723) T ss_pred HHHHHHHHHhhcCCeEEEEEecCCccccceeEEEEecCcceEEeecCCCccceeeeeeEEEEEecCceeEEecccceEEe Confidence 99999999999999999999654 588999999999888776555432 345677778898999999999999 Q ss_pred cCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHhc---CCCceeec Q lcl|Aclame:pro 168 KHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYYE---ENGGILFQ 242 (409) Q Consensus 168 ~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl 242 (409) |.+++.++++|+||+.++..+|....++++++.++|.++ ++++++.+ .+++++.++++++|++.++ |+|+++|+ T Consensus 161 r~~~~~dg~~G~Spi~~a~~~i~~~~aa~~~~~~~f~NG~~p~giL~~~-~l~~e~~~~~~~~~~~~~~G~~Nagk~~vL 239 (723) T protein:vir:94 161 RFSDPYDPLAVMAPWKAARAAVDADFYAATWQRQSFKNGARPGGVVNLG-DMDEQTFTKTVAAFRSQVEGVQNAGRHLLI 239 (723) T ss_pred cCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEcC-CCCHHHHHHHHHHHHHHhhchhhcCcceee Confidence 999888999999999999999999999999998888775 56777776 5999999999999999884 67888888 Q ss_pred C----------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 243 E----------PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQY 312 (409) Q Consensus 243 ~----------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~i 312 (409) + .|++|++++++++|+||+|.+++++++||++|||||.+|++ .++++|.+++.+.|+.++|.|+++.| T Consensus 240 ~g~~~~~~vl~~G~~~~~l~~s~~D~q~le~r~~~~~eIa~afgVPp~~i~~--~st~sN~e~~~~~f~~~tL~P~~~~i 317 (723) T protein:vir:94 240 AGQGSDGGAAGKGATFTSLSMSPAEMDYINSRMHSAEEVMLAFGIRKDALLG--GSTYENQAEAKAAVWTETLIPQMEVM 317 (723) T ss_pred cccccccccccCCceEEEccCCHHHHHHHHHHHHhHHHHHHHhCCChhHcCC--CCCcccHHHHHHHHHHHHHHHHHHHH Confidence 5 58999999999999999999999999999999999999965 46789999999999999999999999 Q ss_pred HHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEeecc--cccc Q lcl|Aclame:pro 313 EEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPLISG--DLYP 388 (409) Q Consensus 313 e~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~~~~--n~~~ 388 (409) |++||++|++..+ ...+++||...+++.|.+++++++.+++++|++|+||+|+++|+||+|||| .++.|. ++.| T Consensus 318 e~~ln~~Ll~~~g--~~~~~~f~~~~lLr~D~~~r~~~~~~~v~~G~~T~NE~R~~lglpPi~gGd~~~~~~p~~~~~a~ 395 (723) T protein:vir:94 318 ASITDLQLLPDIG--WTVEWDFNSVPALQEDLEAQAGRNQGYLVNDVLMVDEVRATIGLDPLPGGIGQMTLTPYRAQFAP 395 (723) T ss_pred HHHHhHhhccccc--CceEEeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCcccceeccccccccC Confidence 9999999997643 245678888889999999999999999999999999999999999999987 334543 3444 Q ss_pred hhcccccccc-----------cCCCCCCCCCC Q lcl|Aclame:pro 389 IDTPLELRKS-----------LKGGDKNVNES 409 (409) Q Consensus 389 ~~~~~~~~~~-----------~~gg~~n~~~~ 409 (409) .+.+...... ..+.++.++.. T Consensus 396 ~~~~~p~~~e~~~~~~~~~~~~~~~~p~~~~~ 427 (723) T protein:vir:94 396 APAPAPAVEEGAARMLALLERVAADRPLPELP 427 (723) T ss_pred CCCCCccchhhhHhhhhhccccccccCcCCCC Confidence 3332111000 00001101000 No 48 >protein:vir:8317 Length: 409 # NCBI annotation: gp34 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:154 # MgeName: Corndog # Cross-refs: genbank:acc:NP_817885;genbank:gi:29566318;genbank:GeneID:1259513 Probab=100.00 E-value=9.5e-83 Score=470.25 Aligned_cols=371 Identities=14% Similarity=0.190 Sum_probs=309.7 Q ss_pred Ccc-hhhhhh-----hhhh--h------------hcccccCc------ccccccc----cccCCCCccccchhHHhhhHH Q lcl|Aclame:pro 1 MAK-ENIVTR-----IKKK--L------------IDNWIDQS------ASKLYDF----SPWKNKSFWGVINNTLETNET 50 (409) Q Consensus 1 M~~-~~~~~r-----~~~~--~------------~~~~~~~~------~~~~~~~----~~~~~~~~~~v~~~~~~~~~~ 50 (409) |+| .+||+- .+++ . ..+..... ......| ..|.+.++..++.+.++++++ T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~t~~~~~~~~~ 80 (409) T protein:vir:83 1 MGFWSNLFGIPSIPDLPNDNGPVDYNPGDPDMVEFRGPEEEPEARALPWIRPTAWSGYPESWATPSWGSAQDKLRTLIDV 80 (409) T ss_pred CchhhhhcccccCCCcccccccccccCCCCceeeccCCCcchhhhhcccccccccccccccccccCccccchhhHhhhHH Confidence 998 444441 0000 0 00000000 0011122 224456778889999999999 Q ss_pred HHHHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEe-eecCCCceeEEEee Q lcl|Aclame:pro 51 IFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLI-ERDIYHQPSKLFLL 129 (409) Q Consensus 51 v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~-~~~~~G~~~~l~~l 129 (409) ||+||++||++||++|++++++++. .+.+.++|+.+||++||+++||+.++.+|++ ||+|+++ .|+.+|.|++|+|| T Consensus 81 v~acV~~Ia~~iA~lpl~~~~~~~~-~~~~~~ll~~~PN~~~t~~~f~~~l~~~lll-Gnay~~~i~r~~~G~~~~L~pl 158 (409) T protein:vir:83 81 AWACIDLNASVLSSMPIYRMRNGRI-IDSVAWMSNPDPEVYTSWQEFAKQLFWDFQL-GEAFVLPMAHGSDGYPIRFRVV 158 (409) T ss_pred HHHHHHHHHHhhccCceEEeeCCcc-ccchhhhcccCCCCCCCHHHHHHHHHHHHhh-CCcEEEEEEECCCCcEEEEEEE Confidence 9999999999999999999987654 4557778999999999999999999999987 9999875 58999999999999 Q ss_pred CCcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCC--Cc Q lcl|Aclame:pro 130 NPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PD 207 (409) Q Consensus 130 ~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~--~~ 207 (409) +|+.|++..+.++.. .|.+.. ...++||||+|.+++.++.+|+||+++++..+.+..++++++..++.+ .+ T Consensus 159 ~p~~v~v~~~~~g~~-~y~~~~------~~~~~eiiHir~~~~~~~~~G~spi~~~~~~i~~~~a~~~~~~~~f~nga~p 231 (409) T protein:vir:83 159 PPWLVNVELKKGARR-EYRIGG------LNVTDEILHIRYQGNTADAHGHGPLESAAPRQVVIGLLQKYVQNLAETGGVP 231 (409) T ss_pred CCcceEEEEcCCceE-EEEEcc------ccCccceEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCc Confidence 999999998877654 444432 234689999999888899999999999999999999999998887766 46 Q ss_pred eeEEecCCcCCHHHHHHHHHHHHHHhc-CCCceeecCCCcee-eeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc Q lcl|Aclame:pro 208 SFMLKYGSNVSTEKRQQVLEDFKQYYE-ENGGILFQEPGVEI-EPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR 285 (409) Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vl~~g~~~-~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~ 285 (409) +++++.++.++++++++++++|++.+. |+|+++++.+|+++ ++++++++|+||+|.+++++++||++|||||++||.. T Consensus 232 ~gil~~~~~ls~e~~~~~~~~~~~~~~~nag~~~il~~g~~~~~~~~~s~~d~q~le~r~~~~~eIa~~fgVPp~llg~~ 311 (409) T protein:vir:83 232 LYWLGVERRLSETEAVDLMDRWIESRSKYAGHPALVTGGATLNQAKSMSAQDLSLMELTQFNEARIAILLGVPPFLVGLP 311 (409) T ss_pred ceEeecCCCCCHHHHHHHHHHHHHhhCCccCccceecCCcccccccCCCHHHHHHHHHHHhhHHHHHHHhCCCHHHccCC Confidence 788999999999999999999998885 67889999999887 5799999999999999999999999999999999865 Q ss_pred c---cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCH Q lcl|Aclame:pro 286 S---NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTI 362 (409) Q Consensus 286 ~---~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~ 362 (409) + +.+|+|.|++...|+++||.|++++||++||++|+++ +.+++||++.+++.|.+++++++++++++|+||+ T Consensus 312 ~~~~~~tysn~eq~~~~f~~~tL~P~~~~ie~~l~~~Ll~~-----~~~~~f~~~~llr~d~~~r~~~~~~~~~~G~lT~ 386 (409) T protein:vir:83 312 GATGSLTYSNIEQLFSFHDRSSLRPKATAVMAALDRWALPS-----PQHLELNRDDYTRPSLVERATAYKIMIEAGVMEP 386 (409) T ss_pred CCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CcEEEeehhhhhccCHHHHHHHHHHHHhCCCcCH Confidence 4 3468999999999999999999999999999999974 5589999999999999999999999999999999 Q ss_pred HHHHHHhCCCCCCCCCEEeeccccc Q lcl|Aclame:pro 363 NDIREWEDLPPVEGGDKPLISGDLY 387 (409) Q Consensus 363 NE~R~~~g~~p~~~gd~~~~~~n~~ 387 (409) ||+|+++||||++|||++ +.+-+ T Consensus 387 NE~R~~~glpp~~ggd~l--~~~gv 409 (409) T protein:vir:83 387 NEARAMERLHSEAAAVRL--SGGGV 409 (409) T ss_pred HHHHHHhCCCCCCCCccc--CCCCC Confidence 999999999999999986 22211 No 49 >protein:vir:960 Length: 413 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076614;genbank:gi:13095722;genbank:GeneID:920279 Probab=100.00 E-value=9.6e-81 Score=459.26 Aligned_cols=384 Identities=15% Similarity=0.229 Sum_probs=310.3 Q ss_pred Ccchhhhhhhhhhhhcc----cccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN----WIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-- 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-- 74 (409) |.+| ++.++..... ..............+....+.. ....++++++|++||++||++||++||+++++++ T Consensus 13 m~~F---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~cI~~ia~~ia~~~~~~~~~~~~~ 88 (413) T protein:vir:96 13 LKFF---NNKRSPTEESKAKDEIPKAPQVVMTLPNFFKELISD-GYTKLSDSPEVRMAVDCIADLVSNMTIQLMQNGETG 88 (413) T ss_pred CCcc---ccCCCcchhhhhhccccccccccccchhhHhhhccc-hhHHHhhchHHHHHHHHHHHhhccCceEEEEecCCC Confidence 5543 3322211100 0000000001111111111111 1234678999999999999999999999998653 Q ss_pred --cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC-ceeEEEeeCCcceEEEEcCCcceeEEEEEc Q lcl|Aclame:pro 75 --VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH-QPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) Q Consensus 75 --~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G-~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~ 151 (409) ...+++.++|+.+||++||+++||+.++.+++++||+|+++.|+..| .+.+|||++|.+|++..+.+. ..|.++. T Consensus 89 ~~~~~~~~~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~r~~~g~~~~~L~~l~~~~v~~~~~~~~--~~y~~~~ 166 (413) T protein:vir:96 89 DKRIKNDLSRVVDIEPNKYLSRKTFIQWLVRSMLLEGNGNAVVKPQVSGDKIIGLTPISPYKVTFNVSDDD--LDYSITF 166 (413) T ss_pred ccccccHHHHHHHhccccCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCCceEEEEEecCceeEEEEcCCe--EEEEEee Confidence 45688999999999999999999999999999999999999999887 477999999999999887543 3455554 Q ss_pred CCCeEEEEccceEEEecC-cCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHH Q lcl|Aclame:pro 152 ATGNKLIVHNMDMLHFKH-IVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLED 228 (409) Q Consensus 152 ~~g~~~~~~~~~vih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 228 (409) .+ ..++++|||||+. +++.++++|.||+.++...+.+..++++++...+.++ ++++++.++.+++++.++++++ T Consensus 167 ~~---~~~~~~evih~k~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~p~gil~~~~~l~~e~~~~~~~~ 243 (413) T protein:vir:96 167 DN---KEYDPSTLLHFVLNPSIERPFIGTGYKVALKDIVGNLKQASVTKKGFMASEYMPNLIVSVDSDSDELSDEEGREN 243 (413) T ss_pred cC---cEEchhhEEEEeccCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHH Confidence 43 3688999999996 4566788999999999999999999999988777664 6788899999999999999999 Q ss_pred HHHHhc---CCCceeecCCCc-eeeec-cCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 229 FKQYYE---ENGGILFQEPGV-EIEPL-PKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 229 ~~~~~~---~~~~~~vl~~g~-~~~~l-~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) |++.++ ++|+++++++|. ++.++ .++++|+|++|.+++++++||++|||||.+||.. ++.+++...|+.+ T Consensus 244 ~~~~~~g~~n~g~~~vl~~~~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVP~~~lg~~-----~~~~~~~~~~~~~ 318 (413) T protein:vir:96 244 FEEMYLKRKEAGKPWIIPEGMVNVQQIKPLTLNDLAINDAVTLDKKTVAGIFGVPAFLLGVG-----TYNKDEFNNFINT 318 (413) T ss_pred HHHHhcCccccCceeeecCCcccccccccCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCCC-----cchHHHHHHHHHH Confidence 999885 468888886665 55665 4689999999999999999999999999999753 3458889999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeec Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLIS 383 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~ 383 (409) ||.|++++||++||++|+++ +.+++||++++++.|.+++++++++++++|++|+||+|+++|+||+||||+++++ T Consensus 319 ~l~P~~~~ie~~ln~~ll~~-----~~~~~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~p~~~gd~~~~~ 393 (413) T protein:vir:96 319 KIMSIAQVIQQTYNKLIVEE-----DMYFSLNPRSLYNYSLTEMVSAGAQMTQLNALRRNEFRNWVGMPPDAEMDDLLVL 393 (413) T ss_pred HHHHHHHHHHHHHHHhhCCC-----CcEEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCcceeeec Confidence 99999999999999999864 6789999999999999999999999999999999999999999999999999999 Q ss_pred ccccchhcccccccccCCCCC Q lcl|Aclame:pro 384 GDLYPIDTPLELRKSLKGGDK 404 (409) Q Consensus 384 ~n~~~~~~~~~~~~~~~gg~~ 404 (409) +|++|++...+.+ ..++||. T Consensus 394 ~n~~~~~~~~~~~-~~~~~dt 413 (413) T protein:vir:96 394 ENYLQQKDLVNQK-KLIQDET 413 (413) T ss_pred ccccchhhccccc-CCCCCCC Confidence 9999998876544 3455555 No 50 >protein:vir:8100 Length: 466 # NCBI annotation: gp4 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:152 # MgeName: Che9c # Cross-refs: genbank:acc:NP_817681;genbank:gi:29566112;genbank:GeneID:1259306 Probab=100.00 E-value=4.8e-80 Score=455.43 Aligned_cols=397 Identities=13% Similarity=0.132 Sum_probs=318.2 Q ss_pred Ccchhhhhhhhhhhhcc------------------cccC----cccccccc-----cccCCCCccccchhHHhhhHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN------------------WIDQ----SASKLYDF-----SPWKNKSFWGVINNTLETNETIFS 53 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~------------------~~~~----~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~v~~ 53 (409) |++. +|+..+.... +.+. .......+ ..+++.++..|+.+.|+++++|++ T Consensus 1 M~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~v~~~~a~~~~~v~~ 77 (466) T protein:vir:81 1 MRLI---DRLLSTRGAAPRMSIDDYAQMLNEFAFNGIGYGFGGGVPRIQQTLAGPSTELAPDTFVGLATQAYQANGPVFA 77 (466) T ss_pred Cchh---HHHhhccCcccccchhhhhhhhhhhhccccccccccccHHHHHhhccccccccCccccccchhhhhccHHHHH Confidence 8884 4433322111 0000 00000111 123344677889999999999999 Q ss_pred HHHHHHHhhccCceeEeecccc----ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC--------C Q lcl|Aclame:pro 54 AITKLSNSMASLPLKMYEDYKV----VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY--------H 121 (409) Q Consensus 54 ~i~~ia~~ia~lp~~~~~~~~~----~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~--------G 121 (409) ||++||++||++||+++++++. ..++..+.|+.+||++||+++||+.++.+++++||||+++.|+.. | T Consensus 78 ~i~~Ia~~ia~lp~~~~~~~~~~~~~~~~~~~~~L~~~PN~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~g~l~~~~~g 157 (466) T protein:vir:81 78 CMLVRQLVFSSVRFRWQRLRDGKPSDTFGSRDLQILETPWKGGTTQDMLSRMIQDADLAGNSYWTIVDGEFVRMRPDWVD 157 (466) T ss_pred HHHHHHHhhccCceEEEEecCCceeeccccHHHHHhhCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCccccccccCc Confidence 9999999999999999986543 234455667779999999999999999999999999999999765 4 Q ss_pred ceeEEEeeCCcceEEEEcCCccee-EEEEEcC----CCeEEEEccceEEEecCc-CcccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 122 QPSKLFLLNPDVVEMLIENQSREL-YYSIHAA----TGNKLIVHNMDMLHFKHI-VASNMVQGISPIDVLKNTTDFDNAV 195 (409) Q Consensus 122 ~~~~l~~l~p~~v~~~~~~~~~~~-~~~~~~~----~g~~~~~~~~~vih~~~~-~~~~~~~G~sp~~~~~~~i~~~~~~ 195 (409) .+.+++|++|..|++..+.++... .|.++.. .++.+.++++||||||.+ ++.++++|+||+.++..+|.++.++ T Consensus 158 ~~~~l~~l~~~~v~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~dviHir~~~~~~d~~~G~s~i~~~~~~i~~~~a~ 237 (466) T protein:vir:81 158 VVVEERMVRGGRGELGGGQLGWRKVGYLYTEGGRQSGNESVGFLAEDVVHFAPIPDPLASYRGMSWLTPILREIRADQAM 237 (466) T ss_pred ceeEEEEecCcceEEEEcCCCceEEEEEEEecCcccccceeeeccccEEEEcCCCCcccccccccHHHHHHHHHHHHHHH Confidence 589999999999999998887653 3444322 235678999999999975 5678999999999999999999999 Q ss_pred HHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHhc---CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHH Q lcl|Aclame:pro 196 RTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYYE---ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRER 270 (409) Q Consensus 196 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~ 270 (409) ++++.+.+.++ ++++++.++.+++++++++++.|++.++ |+|+++|+++|++|++++++++|+||+|.++++.++ T Consensus 238 ~~~~~~~f~ng~~p~gil~~~~~l~~e~~~~~~~~~~~~~~g~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~ 317 (466) T protein:vir:81 238 SKHQAKFFDNGATVNLVIKHNPMADPAAVKKWADEVNSKHAGVDNAWKNLNLYPGADADVVGSNLQEIDFKNVRGGGETR 317 (466) T ss_pred HHHHHHHHhcCCCcceEEecCCCCCHHHHHHHHHHHHHHhcCccccccceEcCCCceEEEccCChhHHHHHHHHHHHHHH Confidence 99998888765 5778899999999999999999999885 568899999999999999999999999999999999 Q ss_pred HHHHhcCChhhcCCc---ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHH Q lcl|Aclame:pro 271 VANVFQLPSIFLNAR---SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQ 347 (409) Q Consensus 271 Ia~~fgvp~~~l~~~---~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~ 347 (409) ||++|||||++||.. .+++|++.|++.+.|+++||.|++++||++||++|+.+.++. ..+++||..++++.|.+++ T Consensus 318 Ia~~fgVPp~~lG~~~~~~~st~sn~eq~~~~f~~~tl~P~~~~ie~~l~~~L~~~~~~~-~~~~~f~~~~llr~d~~~r 396 (466) T protein:vir:81 318 IAAAAGVPPVIVGLSEGLAAATYSNYGQARRRLADGTAHPLWQNLSGCIGHVMPDMGPDV-RLWYDADDVPFLREDEKDA 396 (466) T ss_pred HHHHhCCCHHHcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCc-ceEEEecchhhhccCHHHH Confidence 999999999999865 457899999999999999999999999999999999876654 5789999999999999998 Q ss_pred HHH-------HHHHHhcCCcCHHHHHHHhCCCCCCCCCEEee-cccccchhcccc--------cccccCCCCCCCC Q lcl|Aclame:pro 348 AEV-------YFKAVRSGYYTINDIREWEDLPPVEGGDKPLI-SGDLYPIDTPLE--------LRKSLKGGDKNVN 407 (409) Q Consensus 348 ~~~-------~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~-~~n~~~~~~~~~--------~~~~~~gg~~n~~ 407 (409) +++ +..++++|+ |+||+|+ ++++||.+++ +.++.|++.... .+.+.||||+|++ T Consensus 397 ~~~~~~~~~~~~~~~~~g~-t~nE~r~-----~~~~gd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~ngn 466 (466) T protein:vir:81 397 ADIQKVRAETINTLITAGY-EPESVVA-----AVNSGDLRLLKHTGLTSVQLLPPGVSASASSDTPTSGGADDNGN 466 (466) T ss_pred HHHHHHHHHHHHHHHHcCC-Chhhccc-----cccCCccccccCCCcchhhhcccccccccCCCCcccCCCCcCCC Confidence 875 667888895 9999995 3456776543 344544433221 2234577777777 No 51 >protein:vir:4089 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510984;swissprot:trembl:q8w606;genbank:gi:17488506;uniprot:Q8W606;genbank:GeneID:1260314 Probab=100.00 E-value=8.7e-80 Score=454.02 Aligned_cols=383 Identities=16% Similarity=0.118 Sum_probs=299.7 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++.+++........ ......+|..+. ....++.+.|+++++|++||++||+++|++||+++++++.+.+++ T Consensus 1 Mg~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~l~~~~v~~~v~~Ia~~ia~~p~~~~~~~~~~~~~~ 72 (395) T protein:vir:40 1 MGFKSWVSGFFNEEQ------RTLNLTDTVWCS--IPSEKLKELSIKKWAIDSCANKIANTLSCAEVLTYEKGEEVRKKN 72 (395) T ss_pred CchHHHHHhhhcccc------cccccccchhhc--cccccchhhhhhhHHHHHHHHHHHHHHhhCceeeccCCccccchH Confidence 999655443332211 111222333322 234566788999999999999999999999999999998899999 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEE-cCCCeEEEE Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIH-AATGNKLIV 159 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~-~~~g~~~~~ 159 (409) .++|+.+||++||+++||+.++.+++++||||+++.++..+ +.+. ............ ++.+. ...+..+.| T Consensus 73 ~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnay~~~~~~~~~------~~~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 144 (395) T protein:vir:40 73 WYMFNVEANQNQNATEFWKKAIYKLVYDNEALIFMQDEYIY------VADS-FTKNDKSLYENT-YTEVTLKDLTLKKEF 144 (395) T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHhhcCceEEEEecCcee------ecCC-ccccccccccce-eeeeeecCceeeeee Confidence 99999999999999999999999999999999999876532 2111 111111111111 11111 112234679 Q ss_pred ccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhc----C Q lcl|Aclame:pro 160 HNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYE----E 235 (409) Q Consensus 160 ~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 235 (409) ++++|+|+|+.+......+.++...+...+.....+ ....++..+..+++....+++++.+++++.|++.++ + T Consensus 145 ~~~evih~r~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (395) T protein:vir:40 145 KESEVLHLTLNNESIKSIIDGFYLLYGDLLTAAVNK---YKKLNSRKIIVKLKAMFGQTPEAEEKLRLMLSERMKKFLAE 221 (395) T ss_pred ccccEEEeecCCCCccccchhHHHHHHHHHHHHHHH---HHhcCCCCceEEEecccCCCHHHHHHHHHHHHHHHHHhhcc Confidence 999999999765544444445555555444333222 222333345666677888999999999999998773 5 Q ss_pred CCceeecCCCceeeeccCChhhHHHHHHHHHHH---HHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NGGILFQEPGVEIEPLPKKYVSEDIVASENLTR---ERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQY 312 (409) Q Consensus 236 ~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~---~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~i 312 (409) +++++|+++|++|+++++++.|+|++|.++++. ++||++|||||.+|+ +++++.|++.+.|++++|.|++++| T Consensus 222 ~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~Ia~~fgVPp~~l~----~~~sn~e~~~~~f~~~~L~P~~~~i 297 (395) T protein:vir:40 222 GDSALPVEDGMEIDELAGDSKIAESRDIKKMIDDVFEMVANSFNIPLGLAK----GDTVGLSEQVNSFLMFSINPIAEMF 297 (395) T ss_pred CCceeecCCCceEEeccCChhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCcCHHHHHHHHHHHHHHHHHHHH Confidence 678999999999999999999999999999875 799999999999995 4688999999999999999999999 Q ss_pred HHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeecccccchh Q lcl|Aclame:pro 313 EEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGDLYPID 390 (409) Q Consensus 313 e~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~~~ 390 (409) |++||++||++.++..+.+++||++++++.|.+++++++.+++++|++|+||+|+++|+||+++ ||++++++|++|++ T Consensus 298 e~~l~~kLl~~~~~~~g~~i~fd~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~~g~~pi~~~~gD~~~~~~n~~~~~ 377 (395) T protein:vir:40 298 TDEGNRKFYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSPETQERFVTKNYAPLG 377 (395) T ss_pred HHHHHHhcCChhhhcCCceEEEechhhhccCHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCCCCCCceeeecccccccc Confidence 9999999999988888999999999999999999999999999999999999999999999954 99999999999998 Q ss_pred cccccccccCCCCCCCCCC Q lcl|Aclame:pro 391 TPLELRKSLKGGDKNVNES 409 (409) Q Consensus 391 ~~~~~~~~~~gg~~n~~~~ 409 (409) ...+ ..||||+|++++ T Consensus 378 ~~~~---~~kgge~~~~~~ 393 (395) T protein:vir:40 378 ENEE---DLKGGDINENKG 393 (395) T ss_pred cccc---ccCCCCCCCCcC Confidence 6543 468888888888 No 52 >protein:vir:95965 Length: 385 # NCBI annotation: ORF011 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239800;genbank:gi:66395461;genbank:GeneID:5132882 Probab=100.00 E-value=8.9e-80 Score=453.96 Aligned_cols=370 Identities=16% Similarity=0.153 Sum_probs=305.5 Q ss_pred Ccchhh-hhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccch Q lcl|Aclame:pro 1 MAKENI-VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTE 79 (409) Q Consensus 1 M~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~ 79 (409) |++++. |+|.+. .....+ ...+..++.+.|+++++|++||++||+++|++||+++++++...++ T Consensus 1 Mg~f~~~f~~~~~----------~~~~~~-----~~~~~~~~~~~a~~~~~v~~~i~~ia~~ia~~p~~~~~~~~~~~~~ 65 (385) T protein:vir:95 1 MGLFDSVFKRHSE----------LSWMYD-----LEFLQDKSKKAYLKQIALNTVVEMVARTISQSEFRVMKNNTKEKGT 65 (385) T ss_pred CchhhhhhccCcc----------cccccc-----hhhhhccchhhhhhhHHHHHHHHHHHHHHcccceeeeecCccccch Confidence 999544 333211 000111 1123456678899999999999999999999999999999888999 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIV 159 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (409) +.++|+.+||++||+++||+.++.++++.||||+++.++. +.+..++++.+..+....+.. +.......+....+ T Consensus 66 l~~lL~~~PN~~~t~~~f~~~~~~~l~l~Gna~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 140 (385) T protein:vir:95 66 LYYLLNVRPNRNQNAVDFWQKFIFKLIMDNEVLVVKNDEG-HFFVADDFEKEDELGLYSHRF----TNVLVNDFEFKRVF 140 (385) T ss_pred HHHHHhcccCcCCCHHHHHHHHHHHHhhcCceEEEEecCC-Ceeeccccccccccccccccc----eeeeecccceeeee Confidence 9999999999999999999999999999999999887765 445566666666555433221 12222233445679 Q ss_pred ccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEec--CCcCCHHHHHHHHHHHHHHhcC-- Q lcl|Aclame:pro 160 HNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKY--GSNVSTEKRQQVLEDFKQYYEE-- 235 (409) Q Consensus 160 ~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-- 235 (409) +++||||++++++.+..+|.||++.+...+....++.. +.++++++++. ...+++++.++++++|++.+++ T Consensus 141 ~~~eiih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~-----~~~~~~g~l~~~~~~~~~~e~~~~~~~~~~~~~~g~~ 215 (385) T protein:vir:95 141 TMDDVIYLKYNNQKLDAFSLGLFEDYGEIFGRMIDLQM-----LNNQIRGILKVDATKFYNKEKQKELQAYIDTLFDAFQ 215 (385) T ss_pred ccccEEEecCCCCCcccccchHHHHHHHHHHHHHHHHH-----hcCCCceEEEeCCccCCCHHHHHHHHHHHHHHhhhhh Confidence 99999999999887788999999999999877665543 33444455544 4568999999999999998853 Q ss_pred --CCceeecCCCceeeeccC------ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 --NGGILFQEPGVEIEPLPK------KYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLP 307 (409) Q Consensus 236 --~~~~~vl~~g~~~~~l~~------~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P 307 (409) .++++++++|++|+++++ ++.|+||+|.++++.++||++|||||.+|+ ++++|.|++.+.|++++|.| T Consensus 216 ~~~~~i~~l~~g~~~~~l~~~~~~~~s~~d~~~~e~~~~~~~~Ia~~fgVpp~~l~----~~~sn~e~~~~~~~~~~l~P 291 (385) T protein:vir:95 216 NNTIAVVPLTEGLAYEEHSNRGAAQSAQQFSELNELKKTVLTDVARMIGVPPSLVL----GEMADLEKTIESYLQFCINP 291 (385) T ss_pred hcCCceEEcCCCceeEeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCcCHHHHHHHHHHHHHHH Confidence 446889999999999975 667999999999999999999999999995 57899999999999999999 Q ss_pred HHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCC--CCCCEEeeccc Q lcl|Aclame:pro 308 IVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPV--EGGDKPLISGD 385 (409) Q Consensus 308 ~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~--~~gd~~~~~~n 385 (409) ++++||++||++|+++.++. +.+++||++++++.|.+++++++.+++++|+||+||+|+++|+||+ ||||++++|+| T Consensus 292 ~~~~ie~~l~~~L~~~~~~~-~~~~~fd~~~l~~~D~~~~~~~~~~~~~~g~lt~NE~R~~~g~~p~~~~~gd~~~~~~n 370 (385) T protein:vir:95 292 LLRKIEAELNSKFFYQDEYL-NDDMHIKVVGIDKRDPLKLSEAIDKLVASGTFTRNQVRIMTGEEPADDPELDKFIITKN 370 (385) T ss_pred HHHHHHHHHHhhcCChhhcc-cceEEEechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccc Confidence 99999999999999988764 5589999999999999999999999999999999999999999998 68999999999 Q ss_pred ccchhcccccccccCCCCCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 386 ~~~~~~~~~~~~~~~gg~~n~~ 407 (409) ++|++. .||||+|++ T Consensus 371 ~~~~~~-------~kgge~~~e 385 (385) T protein:vir:95 371 LQSADA-------FKGGESNEE 385 (385) T ss_pred ceeccc-------ccCCCCCCC Confidence 999864 588888888 No 53 >protein:vir:3843 Length: 397 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050149;swissprot:trembl:q9t1f8;genbank:gi:9633041;uniprot:Q9T1F8;genbank:GeneID:1262206 Probab=100.00 E-value=2.5e-79 Score=451.52 Aligned_cols=382 Identities=18% Similarity=0.210 Sum_probs=315.2 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |+||+++.+.+.... .. ......+ .+.+.++..|+.+.++++++|++||++||++||++||++ .++. T Consensus 1 M~~f~~~~~~~~~~~---~~--~~~~~~~-~~~~~~~~~v~~~~al~~~~V~~~v~~ia~~ia~~p~~~-------~~~~ 67 (397) T protein:vir:38 1 MPLLKLNKSHSQGFS---LN--DPDWVNF-LTGGEAQKYVSADTALKNSDIFSLIMQLSGDLAMVRYTS-------ESDR 67 (397) T ss_pred CcchhhhhcccCccc---CC--chhhhhh-hcCCcCCceechHHhhccHHHHHHHHHHHHHHhhCcccc-------cccH Confidence 999876544322211 11 1111111 122345677899999999999999999999999999974 3567 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---CCCeEE Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---ATGNKL 157 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~~g~~~ 157 (409) .++|+.+||++||+++||+.++.+++++||||++++|+..|.+.+|+|++|.+|++..+.+|....|.+.. ..|..+ T Consensus 68 ~~~l~~~PN~~~s~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~~~~~y~~~~~~~~~~~~~ 147 (397) T protein:vir:38 68 SQSIISNPSVTANGYSFWQGMFAQLLLDGNCYAYRHKNTNGVDLSWEYLRPSQVQPMLLQDGSGLIYNINFDEPAIGYME 147 (397) T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecccccccee Confidence 88899999999999999999999999999999999999999999999999999999999988877777654 345567 Q ss_pred EEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHhc- Q lcl|Aclame:pro 158 IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYYE- 234 (409) Q Consensus 158 ~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 234 (409) .|+++||||++++++.+..+|+||+.++...+....++++++...+.++ ++++++.++.+++++.++++++|+..++ T Consensus 148 ~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~e~~~~~~~~~~~~~~~ 227 (397) T protein:vir:38 148 NVPAADVIHIRLLSKNGGKTGISPLSALINEQQIKDASNELTLKALKQSVTASAVLTIQKGGLLDAETRIARSKEISKQI 227 (397) T ss_pred EecCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCCCCHHHHHHHHHHHHHHhcc Confidence 8999999999999888888999999999999999999999988877654 6788899999999999999999988774 Q ss_pred -CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 -ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYE 313 (409) Q Consensus 235 -~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie 313 (409) |+|+++|+++|++|+++++++.|+||+|.+++.+++||++|||||.+|++.+.+ +++.|+ ...|+..||.|+++.|| T Consensus 228 ~n~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~afgVp~~~lg~~~~~-~~~~e~-~~~~~~~~l~P~~~~ie 305 (397) T protein:vir:38 228 HNSDGPVVIDALEDYKPLEVKGNIASLLNQVDWTRDQIAKVYGVPDSYLNGQGDQ-QSSITQ-ISGQYAKSLNRYVQAIV 305 (397) T ss_pred cccCCceecCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCc-ccHHHH-HHHHHHHHHHHHHHHHH Confidence 678999999999999999999999999999999999999999999999987654 466664 46788899999999999 Q ss_pred HHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccc Q lcl|Aclame:pro 314 EEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPL 393 (409) Q Consensus 314 ~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~ 393 (409) ++||++|+++.+ |++..+.+.|.+++++.+++++++|++|+||+|+++|++|+++||.+.......+.... T Consensus 306 ~~ln~~l~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~~~~~~- 376 (397) T protein:vir:38 306 GELNDKLHANIS--------ANIRFAIDAMGDQYASTISSSVKGGTIAGNQARFILQNSGYLAKDLPDPEKEPQQAIQL- 376 (397) T ss_pred HHHHHhccChhc--------ccccccccCCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCccccccccccccccc- Confidence 999999997532 34455667899999999999999999999999999999999999976555444333221 Q ss_pred ccccccCCCCCCCCCC Q lcl|Aclame:pro 394 ELRKSLKGGDKNVNES 409 (409) Q Consensus 394 ~~~~~~~gg~~n~~~~ 409 (409) ...+||+++++++ T Consensus 377 ---~~~~~g~~~~~~~ 389 (397) T protein:vir:38 377 ---IQQEGGENDGNNS 389 (397) T ss_pred ---cccccCCCCCCCC Confidence 2233444333333 No 54 >protein:vir:4854 Length: 386 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049394;genbank:gi:9632422;genbank:GeneID:1258515 Probab=100.00 E-value=6.5e-79 Score=449.24 Aligned_cols=380 Identities=18% Similarity=0.187 Sum_probs=321.3 Q ss_pred CcchhhhhhhhhhhhcccccCccccccccccc-CCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccch Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPW-KNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTE 79 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~ 79 (409) |++|+++.+.+........ ..........+ ...++..|+.+.++++|+|++||++||++||++|++++++ T Consensus 1 M~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~~p~~~~~~------- 71 (386) T protein:vir:48 1 MPIFNITNLATESPPISQG--GFFDITDPDFLSTLNGSEWVSAESALRNSDLFSIINQLSNDLATVKLTASRK------- 71 (386) T ss_pred Ccccccccccccccccccc--cccccccchhcccccCCceechhhhhcchHHHHHHHHHHHhhccCceeeccc------- Confidence 9998876654332211110 01111111111 1235567889999999999999999999999999999854 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCC---CeE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT---GNK 156 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~---g~~ 156 (409) ..+.|+.+||++||+++||+.++.+++++||||+++.|+..|.+.+|+|++|+.|++..+.++...+|.+.... +.. T Consensus 72 ~~~~l~~~pN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~ 151 (386) T protein:vir:48 72 QLQGIIDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPK 151 (386) T ss_pred hhHHHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEecCccccce Confidence 35668889999999999999999999999999999999999999999999999999999998888887775443 456 Q ss_pred EEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 157 LIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYYE 234 (409) Q Consensus 157 ~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (409) +.|+++||||++.+++.+.++|+||+..+..++.++.++++++.+.+.++ ++++++.++.+++++.+++++.|.+..+ T Consensus 152 ~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~ii~~~~~~~~e~~~~~~~~~~~~~~ 231 (386) T protein:vir:48 152 QHVPQGDVLHFKLLSVDGGLTSVSPLMALSRELNIQKASDKLTLNSLKNALNANGILKIKGGGLLDFKTKLSRSRQAMKQ 231 (386) T ss_pred eEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHHHHHHhhc Confidence 78999999999999888889999999999999999999999988877664 6788899999999999999999999999 Q ss_pred CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEE 314 (409) Q Consensus 235 ~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~ 314 (409) ++|+++|+++|++|+++++++.|+||+|.++++.++||++|||||.+||. .+++++.+++.+.|++.+|.|+++.||+ T Consensus 232 n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~--~~~~~~~e~~~~~~~~~~l~P~~~~ie~ 309 (386) T protein:vir:48 232 MQGGPLVLDDLEEFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPENVVGG--QGDQQSSLEMSLDLYNKAVSRYLRPFLS 309 (386) T ss_pred CCCCceecCCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCC--CCCcccHHHHHHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999985 4578899999999999999999999999 Q ss_pred HHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccc Q lcl|Aclame:pro 315 EFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLE 394 (409) Q Consensus 315 ~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~ 394 (409) +|+++|+++ +++|.......|...++..+.+++++|++|+||+|+++|++|++++|...... . T Consensus 310 ~l~~~l~~~--------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~lg~~~~~~~~~~~~~~---------~ 372 (386) T protein:vir:48 310 ELSQKLSCD--------VDADILPAVDPTGSNSVSRINSMVKSGTLAQNQGLYILQQAEILPKELPEGEN---------P 372 (386) T ss_pred HHHHhhcch--------hhcchhhhhccChHHHHHHHHHHHhCCCcCHHHHHHHhhcCCCCCccchhhcC---------C Confidence 999999864 34556666677888888999999999999999999999999998777443211 1 Q ss_pred cccccCCCCCCCCC Q lcl|Aclame:pro 395 LRKSLKGGDKNVNE 408 (409) Q Consensus 395 ~~~~~~gg~~n~~~ 408 (409) .....+|||+|++| T Consensus 373 ~~~~~~gGd~~~~~ 386 (386) T protein:vir:48 373 NKTTLKGGEINGED 386 (386) T ss_pred CCCccCCCCCCCCC Confidence 12246789999999 No 55 >protein:vir:6210 Length: 394 # NCBI annotation: Portal protein # Family: family:all:10882 # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852590;genbank:gi:31415850;genbank:GeneID:1489208 Probab=100.00 E-value=5.4e-79 Score=449.69 Aligned_cols=381 Identities=15% Similarity=0.214 Sum_probs=305.3 Q ss_pred CcchhhhhhhhhhhhcccccCccccccc-ccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-cccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYD-FSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-VVNT 78 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~ 78 (409) |+++++|.+...+.. . ......+ ++.....++..|+.+.++++++|++||++||++||++||++++++. .... T Consensus 1 MGl~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~vt~~~al~~~~v~~~i~~Ia~~iA~lp~~v~~~~g~~~~~ 75 (394) T protein:vir:62 1 MGLRDRFSNYLFKKA---E--KRGYLDNVLGKSIRYSGVYVTDSNILQSSDVYELLQDISNQMVLADIVVEDEFGNEIKD 75 (394) T ss_pred CchhhhhhhhccCCC---C--chhhhhhhhhcccccCccccChhhhhccHHHHHHHHHHHHhhcccceEEEcCCCcccch Confidence 999777654321111 0 1111111 2222334556688899999999999999999999999999997542 3333 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEE Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLI 158 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~ 158 (409) +..+.|+.+||++||+++||+.++.+++++||+|+++.++..+.+ ..+.+..++++.. .+.. ..+. T Consensus 76 ~~~~~Ll~~PN~~~t~~~f~~~~~~~lll~Gn~~~~i~~~~~~~~--------~~~~~~~~~~~~~---~~~~---~~~~ 141 (394) T protein:vir:62 76 DIALQILRNPNNYLTQSEFIKLMTNTYLLEGETFPILNGAQIHLA--------SNVFTELDDNLVE---HFNI---GGHE 141 (394) T ss_pred hhHHHHhccCCCCCCHHHHHHHHHHHHHhcCCeEEEEecceeecc--------ccceEEECCceEE---EEee---CCEE Confidence 445566679999999999999999999999999999976544322 3455555555432 2221 2367 Q ss_pred EccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCC--CceeEEecCCcCC--HHHHHHHHHHHHHHhc Q lcl|Aclame:pro 159 VHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYGSNVS--TEKRQQVLEDFKQYYE 234 (409) Q Consensus 159 ~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 234 (409) |+++||+|+|+++ .++++|+||+..+..++..+.+++++....+.+ .++++++.++.++ +++++++++.|++.++ T Consensus 142 ~~~~eiih~r~~~-~d~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (394) T protein:vir:62 142 IPPCMIRHVKNIG-ADHLRGKGILDLGRDTLEGVMSAEKTLTDKYKKGGLLTFLLNLDAHINPQNGAQSKLINAILDQLE 220 (394) T ss_pred echhheEEecCcC-CCCccccChHHHHHHHHHHHHHHHHHHHHHHHccCCcceEEEeCCCCCcCHHHHHHHHHHHHHHhc Confidence 9999999999875 577999999999999999999999998777655 4677888877665 5567899999999885 Q ss_pred ---CCCceeecCCCc--eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 ---ENGGILFQEPGV--EIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIV 309 (409) Q Consensus 235 ---~~~~~~vl~~g~--~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~ 309 (409) ++|+++|++.|. ++++++.++.|+|++|.++++.++||++|||||.+|++. ++++.|++.+.|+++||.|++ T Consensus 221 g~~n~g~~~vl~~g~~~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~---~~sn~e~~~~~~~~~~l~P~~ 297 (394) T protein:vir:62 221 SIDEARSVKMIPLGKGYSIDTLKSPLDDEKTLAYLNVYKKDLGKFLGINVDTYTEL---IKEDIEKAMMYIHNKAVRPIM 297 (394) T ss_pred cccccCceeEeeCCCceeEEecCCCcchHHHHHHHHHHHHHHHHHhCCCHHHcCCC---CCcCHHHHHHHHHHHHHHHHH Confidence 467888887665 666888999999999999999999999999999999853 568899999999999999999 Q ss_pred HHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCC--CCCCEEeeccccc Q lcl|Aclame:pro 310 KQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPV--EGGDKPLISGDLY 387 (409) Q Consensus 310 ~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~--~~gd~~~~~~n~~ 387 (409) ++||++||++||++.++ .+.+++||...+... +++++++.+++++|+||+||+|+++|+||+ |+||++++++|+. T Consensus 298 ~~ie~~l~~kll~~~~~-~~~~~~fd~~~~~~~--~~~~~~~~~~~~~g~~T~NE~R~~~gl~p~~~~~gd~~~~~~n~~ 374 (394) T protein:vir:62 298 KNFEDHLSLLFYAQNSG-KRIKFKINILDFVTY--SNKTNIGYNLVRTAITSPDNVADMLGFPKQNTKESQAIYISNDVT 374 (394) T ss_pred HHHHHHHhhhhcCcccc-CceEEEechhhhcCH--HHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCCeeecccccc Confidence 99999999999998664 356777777776655 567889999999999999999999999999 6899999999999 Q ss_pred chhcccccccccCCCCCCCC Q lcl|Aclame:pro 388 PIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 388 ~~~~~~~~~~~~~gg~~n~~ 407 (409) |++.....+...||||+|++ T Consensus 375 ~~~~~~~~~~~~kgge~~en 394 (394) T protein:vir:62 375 EIGKKEATDGSLGGGEENEN 394 (394) T ss_pred cccccccccccCCCCCCCCC Confidence 99887777778899999888 No 56 >protein:vir:104259 Length: 403 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1504 # MgeName: T5 # Cross-refs: genbank:acc:YP_006980;genbank:gi:46401881;genbank:GeneID:2777676 Probab=100.00 E-value=8.4e-78 Score=443.15 Aligned_cols=380 Identities=15% Similarity=0.192 Sum_probs=305.7 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecc------- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDY------- 73 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~------- 73 (409) |++.+|+....+.-. ..+. ....+. .........+.++|+++++|++||++||++||++|++++++. T Consensus 1 mg~~~~~~~~~~~~~-~~~~-~~~~~~----~~~~~~~~~t~~~~~~~~~v~~cv~~Ia~~ia~~p~~v~~~~~~~~~~~ 74 (403) T protein:vir:10 1 MGFKSWITEKLNPGQ-RIIR-DMEPVS----HRTNRKPFTTGQAYSKIEILNRTANMVIDSAAECSYTVGDKYNIVTYAN 74 (403) T ss_pred Ccchhhhhhccchhh-hhhh-cccccc----cccCCcccccHHHHHHHHHHHHHHHHHHHHHhhCceeEeeccccccccc Confidence 999998875433110 0010 111110 011111223568899999999999999999999999998643 Q ss_pred ccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCC Q lcl|Aclame:pro 74 KVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT 153 (409) Q Consensus 74 ~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~ 153 (409) ....+++.++|+.+||++||+++||+.++.+++++||||+++.+ .+++++++..+++..+.++....|.+. T Consensus 75 ~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~~ll~Gnayi~~~~------~~l~~l~~~~~~v~~~~~~~~~~~~~~--- 145 (403) T protein:vir:10 75 GVKTKTLDTLLNVRPNPFMDISTFRRLVVTDLLFEGCAYIYWDG------TSLYHVPAALMQVEADANKFIKKFIFN--- 145 (403) T ss_pred ccccchHHHHHhhCCCCCCCHHHHHHHHHHHHhhcCCeEEEEeC------ceeEeecCcceEEEEcCCceEEEEEec--- Confidence 23467889999999999999999999999999999999988742 368999999999988776665444332 Q ss_pred CeEEEEccceEEEecCcC----cccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHH Q lcl|Aclame:pro 154 GNKLIVHNMDMLHFKHIV----ASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLE 227 (409) Q Consensus 154 g~~~~~~~~~vih~~~~~----~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 227 (409) ....+++++|+|++... +.++.+|+||+.++..++.++.+++++..+.+.++ ++++++.++.+++++++++++ T Consensus 146 -~~~~~~~~eiih~~~~~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~l~~e~~~~~~~ 224 (403) T protein:vir:10 146 -NQINYRVDEIIFIKDNSYVCGTNSQISGQSRVATVIDSLEKRSKMLNFKEKFLDNGTVIGLILETDEILNKKLRERKQE 224 (403) T ss_pred -CceeecccceEEecccccccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCHHHHHHHHH Confidence 23568899999999543 34778999999999999999999999988877664 678899999999999999999 Q ss_pred HHHHHhc---CCCceeecCCCceeeeccC--ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHH Q lcl|Aclame:pro 228 DFKQYYE---ENGGILFQEPGVEIEPLPK--KYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQ 302 (409) Q Consensus 228 ~~~~~~~---~~~~~~vl~~g~~~~~l~~--~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~ 302 (409) +|++.++ |+|+++|+++|++|+++++ ++.|+||+|.++++.++||++|||||.+|+. ++++|.|++.+.|++ T Consensus 225 ~~~~~~~g~~n~g~~~vl~~g~~~~~~~~~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~---~~~sn~e~~~~~f~~ 301 (403) T protein:vir:10 225 ELQLDYNPSTGQSSVLILDGGMKAKPYSQISSFKDLDFKEDIEGFNKSICLAFGVPQVLLDG---GNNANIRPNIELFYY 301 (403) T ss_pred HHHHHhCCcccCcceeecCCCceeEEecccCCHHHHHHHHHHHHHHHHHHHHhCCCHHHcCC---CCCcCHHHHHHHHHH Confidence 9999885 5788999999999999985 5789999999999999999999999999974 467899999999999 Q ss_pred HHHHHHHHHHHHHHHHhhcChhhccccceEEecchhh--hhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCC Q lcl|Aclame:pro 303 HTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSY--LRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGD 378 (409) Q Consensus 303 ~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l--~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd 378 (409) +||.|++++||++||++| +.+++||++.+ ++.|.+++++++.+++++|++|+||+|+++|+||+| +|| T Consensus 302 ~tl~P~~~~ie~~l~~~L--------~~~~~~d~~~~~~l~~D~~~~~~~~~~~~~~G~lT~NE~R~~~gl~pi~~~~~d 373 (403) T protein:vir:10 302 MTIIPMLNKLTSSLTFFF--------GYKITPNTKEVAALTPDKEAEAKHLTSLVNNGIITGNEARSELNLEPLDDEQMN 373 (403) T ss_pred HHHHHHHHHHHHHHHHhc--------CceeeeccchhhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCccccc Confidence 999999999999999987 34577888755 788999999999999999999999999999999995 799 Q ss_pred EEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 379 KPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 379 ~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ++++|+|+.....+... +..|+++++.+| T Consensus 374 ~~~~p~n~~~~~~~~~~--~e~~~~~~~~~g 402 (403) T protein:vir:10 374 KIRIPANVAGSATGVSG--QEGGRPKGSTEG 402 (403) T ss_pred ccccccccccccccCCC--CcCCCCCCCcCC Confidence 99999998764332211 111222222333 No 57 >protein:vir:9507 Length: 395 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835554;genbank:gi:30043953;genbank:GeneID:1260535 Probab=100.00 E-value=9.9e-78 Score=442.75 Aligned_cols=378 Identities=16% Similarity=0.119 Sum_probs=304.1 Q ss_pred Ccchhh-hhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccch Q lcl|Aclame:pro 1 MAKENI-VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTE 79 (409) Q Consensus 1 M~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~ 79 (409) |+++++ |+|.+. .....+ ...+..++.+.|+++++|++||++||+++|++||+++++++...++ T Consensus 1 Mg~f~~lf~~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~ 65 (395) T protein:vir:95 1 MSILEKIFKTRKD----------ITYMLD-----LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKND 65 (395) T ss_pred CchhhhhhccCcc----------cccccc-----chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccch Confidence 999754 343211 011111 1234667788899999999999999999999999999999889999 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIV 159 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (409) +.++|+.+||++||+++||+.++.++++.|++|+++.++. .++++++..+++.......... +.....+....+ T Consensus 66 ~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 139 (395) T protein:vir:95 66 VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDDIFKD-VTVKDYTYQRTF 139 (395) T ss_pred HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCcceeE-EEEcCceeeeee Confidence 9999999999999999999999999999999987775543 2455555555544333222222 222333456789 Q ss_pred ccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcC--CC Q lcl|Aclame:pro 160 HNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEE--NG 237 (409) Q Consensus 160 ~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 237 (409) +++||||++.+++.+..+|.||+.++...+....++ +...+.+++.+...+..+++++.+++++.|++.+++ ++ T Consensus 140 ~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~~----~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 215 (395) T protein:vir:95 140 TMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGA----QLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKN 215 (395) T ss_pred ccccEEEEccCCCCcccccchHHHHHHHHHHHHHHH----HHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccccc Confidence 999999999988888899999999999888776653 233444555555556668999999999999998853 33 Q ss_pred --ceeecCCCceeeeccCChhhH-----HHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 --GILFQEPGVEIEPLPKKYVSE-----DIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 238 --~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) .++++++|++|+++++++.++ ||+|+++++.++||++|||||++|+ +++++.|++.+.|++++|.|+++ T Consensus 216 ~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~l~P~~~ 291 (395) T protein:vir:95 216 QLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFCLTPLLK 291 (395) T ss_pred CcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHHHHHHHH Confidence 356689999999999988765 8999999999999999999999996 47889999999999999999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC--CEEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG--DKPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g--d~~~~~~n~~~ 388 (409) +||++||++|+++.++.. +++||++++++.|.+++++++.+++++|++|+||+|+++|+||+||| |++++|+|++| T Consensus 292 ~ie~~l~~kL~~~~~~~~--~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~ 369 (395) T protein:vir:95 292 KIQNELNAKLITQSMYLK--DTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEK 369 (395) T ss_pred HHHHHHHHhhcChhhhcc--cceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccc Confidence 999999999999876544 35789999999999999999999999999999999999999999875 99999999999 Q ss_pred hhccccc-----ccccCCCCCCCCCC Q lcl|Aclame:pro 389 IDTPLEL-----RKSLKGGDKNVNES 409 (409) Q Consensus 389 ~~~~~~~-----~~~~~gg~~n~~~~ 409 (409) ++...+. +...||||+|++-. T Consensus 370 ~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:95 370 ANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred ccccccccCcccccccCCCCCCCCCC Confidence 8765443 24457777766533 No 58 >protein:vir:101289 Length: 395 # NCBI annotation: phage portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908829;genbank:gi:118725093;genbank:GeneID:4555860 Probab=100.00 E-value=9.9e-78 Score=442.75 Aligned_cols=378 Identities=16% Similarity=0.119 Sum_probs=304.1 Q ss_pred Ccchhh-hhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccch Q lcl|Aclame:pro 1 MAKENI-VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTE 79 (409) Q Consensus 1 M~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~ 79 (409) |+++++ |+|.+. .....+ ...+..++.+.|+++++|++||++||+++|++||+++++++...++ T Consensus 1 Mg~f~~lf~~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~ 65 (395) T protein:vir:10 1 MSILEKIFKTRKD----------ITYMLD-----LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKND 65 (395) T ss_pred CchhhhhhccCcc----------cccccc-----chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccch Confidence 999754 343211 011111 1234667788899999999999999999999999999999889999 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIV 159 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (409) +.++|+.+||++||+++||+.++.++++.|++|+++.++. .++++++..+++.......... +.....+....+ T Consensus 66 ~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 139 (395) T protein:vir:10 66 VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDDIFKD-VTVKDYTYQRTF 139 (395) T ss_pred HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCcceeE-EEEcCceeeeee Confidence 9999999999999999999999999999999987775543 2455555555544333222222 222333456789 Q ss_pred ccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcC--CC Q lcl|Aclame:pro 160 HNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEE--NG 237 (409) Q Consensus 160 ~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 237 (409) +++||||++.+++.+..+|.||+.++...+....++ +...+.+++.+...+..+++++.+++++.|++.+++ ++ T Consensus 140 ~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~~----~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 215 (395) T protein:vir:10 140 TMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGA----QLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKN 215 (395) T ss_pred ccccEEEEccCCCCcccccchHHHHHHHHHHHHHHH----HHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccccc Confidence 999999999988888899999999999888776653 233444555555556668999999999999998853 33 Q ss_pred --ceeecCCCceeeeccCChhhH-----HHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 --GILFQEPGVEIEPLPKKYVSE-----DIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 238 --~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) .++++++|++|+++++++.++ ||+|+++++.++||++|||||++|+ +++++.|++.+.|++++|.|+++ T Consensus 216 ~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~l~P~~~ 291 (395) T protein:vir:10 216 QLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFCLTPLLK 291 (395) T ss_pred CcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHHHHHHHH Confidence 356689999999999988765 8999999999999999999999996 47889999999999999999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC--CEEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG--DKPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g--d~~~~~~n~~~ 388 (409) +||++||++|+++.++.. +++||++++++.|.+++++++.+++++|++|+||+|+++|+||+||| |++++|+|++| T Consensus 292 ~ie~~l~~kL~~~~~~~~--~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~ 369 (395) T protein:vir:10 292 KIQNELNAKLITQSMYLK--DTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEK 369 (395) T ss_pred HHHHHHHHhhcChhhhcc--cceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccc Confidence 999999999999876544 35789999999999999999999999999999999999999999875 99999999999 Q ss_pred hhccccc-----ccccCCCCCCCCCC Q lcl|Aclame:pro 389 IDTPLEL-----RKSLKGGDKNVNES 409 (409) Q Consensus 389 ~~~~~~~-----~~~~~gg~~n~~~~ 409 (409) ++...+. +...||||+|++-. T Consensus 370 ~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 370 ANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred ccccccccCcccccccCCCCCCCCCC Confidence 8765443 24457777766533 No 59 >protein:vir:100650 Length: 395 # NCBI annotation: 77ORF008 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958604;genbank:gi:41189523;genbank:GeneID:2743796 Probab=100.00 E-value=9.9e-78 Score=442.75 Aligned_cols=378 Identities=16% Similarity=0.119 Sum_probs=304.1 Q ss_pred Ccchhh-hhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccch Q lcl|Aclame:pro 1 MAKENI-VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTE 79 (409) Q Consensus 1 M~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~ 79 (409) |+++++ |+|.+. .....+ ...+..++.+.|+++++|++||++||+++|++||+++++++...++ T Consensus 1 Mg~f~~lf~~~~~----------~~~~~~-----~~~~~~v~~~~~~~~~~v~~~i~~Ia~~iA~~p~~~~~~~~~~~~~ 65 (395) T protein:vir:10 1 MSILEKIFKTRKD----------ITYMLD-----LDMIEDLSQQAYVKRLAIDSCIEFVARAVAQSHFKVLEGNRIQKND 65 (395) T ss_pred CchhhhhhccCcc----------cccccc-----chhccccchhhhhhhHHHHHHHHHHHHhhccceeEeccCCccccch Confidence 999754 343211 011111 1234667788899999999999999999999999999999889999 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIV 159 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (409) +.++|+.+||++||+++||+.++.++++.|++|+++.++. .++++++..+++.......... +.....+....+ T Consensus 66 ~~~ll~~~PN~~~t~~~f~~~~~~~lll~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 139 (395) T protein:vir:10 66 VYYKLNIKPNTDLSSDSFWQQVIYKLIYDNEVLIVVSDSK-----ELLIADSFYREEYALYDDIFKD-VTVKDYTYQRTF 139 (395) T ss_pred HHHHHHhccCcCCCHHHHHHHHHHHHhhCCceEEEEecCC-----CeEecCCccceeEeecCcceeE-EEEcCceeeeee Confidence 9999999999999999999999999999999987775543 2455555555544333222222 222333456789 Q ss_pred ccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcC--CC Q lcl|Aclame:pro 160 HNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEE--NG 237 (409) Q Consensus 160 ~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 237 (409) +++||||++.+++.+..+|.||+.++...+....++ +...+.+++.+...+..+++++.+++++.|++.+++ ++ T Consensus 140 ~~~evih~~~~~~~~~~~G~spi~~~~~~~~~~~~~----~~~~~~~~gii~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 215 (395) T protein:vir:10 140 TMQEVIYLKYNNNKVTHFVESLFEDYGKIFGRMIGA----QLKNYQIRGILKSASSAYDEKNIEKLQAFTNKLFNTFNKN 215 (395) T ss_pred ccccEEEEccCCCCcccccchHHHHHHHHHHHHHHH----HHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHHhcccccc Confidence 999999999988888899999999999888776653 233444555555556668999999999999998853 33 Q ss_pred --ceeecCCCceeeeccCChhhH-----HHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 238 --GILFQEPGVEIEPLPKKYVSE-----DIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 238 --~~~vl~~g~~~~~l~~~~~d~-----~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) .++++++|++|+++++++.++ ||+|+++++.++||++|||||++|+ +++++.|++.+.|++++|.|+++ T Consensus 216 ~~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~f~VPp~~l~----~~~sn~e~~~~~~~~~~l~P~~~ 291 (395) T protein:vir:10 216 QLAIAPLIEGFDYEELSNGGKNSNMPFSELSELMRDAIKNVALMIGIPPGLIY----GETADLEKNTLVFEKFCLTPLLK 291 (395) T ss_pred CcceEEcCCCceeeeccccccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CcccCHHHHHHHHHHHHHHHHHH Confidence 356689999999999988765 8999999999999999999999996 47889999999999999999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC--CEEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG--DKPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g--d~~~~~~n~~~ 388 (409) +||++||++|+++.++.. +++||++++++.|.+++++++.+++++|++|+||+|+++|+||+||| |++++|+|++| T Consensus 292 ~ie~~l~~kL~~~~~~~~--~~~f~~~~l~~~D~~~~~~~~~~~~~~G~lt~NE~R~~~g~~p~~~g~~d~~~~~~n~~~ 369 (395) T protein:vir:10 292 KIQNELNAKLITQSMYLK--DTRIEIVGVNKKDPLQYAEAIDKLVSSGSFTRNEVRIMLGEEPSDNPELDEYLITKNYEK 369 (395) T ss_pred HHHHHHHHhhcChhhhcc--cceecchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeecccccc Confidence 999999999999876544 35789999999999999999999999999999999999999999875 99999999999 Q ss_pred hhccccc-----ccccCCCCCCCCCC Q lcl|Aclame:pro 389 IDTPLEL-----RKSLKGGDKNVNES 409 (409) Q Consensus 389 ~~~~~~~-----~~~~~gg~~n~~~~ 409 (409) ++...+. +...||||+|++-. T Consensus 370 ~~~~~~~~~~~~~~~~kgg~~~~~g~ 395 (395) T protein:vir:10 370 ANSGENDEKEKDENTLKGGDEDESGD 395 (395) T ss_pred ccccccccCcccccccCCCCCCCCCC Confidence 8765443 24457777766533 No 60 >protein:vir:100187 Length: 385 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025029;genbank:gi:48697262;genbank:GeneID:2948285 Probab=100.00 E-value=4.5e-76 Score=433.65 Aligned_cols=373 Identities=16% Similarity=0.195 Sum_probs=301.2 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++++++.+.+............. .....+.+.+...|+.+.|+++++|++||++||++||++||++++. .. T Consensus 1 Mg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~v~~~------~~ 72 (385) T protein:vir:10 1 MGLLTPRNFNKRKAKNMVYPSNPA--FFTTTVGGMQLSYVSALSALQNTNVYSVINRIASDVASAHFKTENT------AT 72 (385) T ss_pred Cccccchhcccccccccccccchh--hhhhhccccCccccCHHHhhccHHHHHHHHHHHHHHhhCceeeecc------ch Confidence 999877654433322211111110 0111122334566789999999999999999999999999998643 34 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (409) ..+| .+||++||+++||+.++.+++++||||+++.|+ +.+++|+++.++++..+.++.. +++.....+..+.|+ T Consensus 73 ~~ll-~~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~r~----~~~~~p~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~ 146 (385) T protein:vir:10 73 LNRL-ESPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIV-YTVLESNDRPQMVLR 146 (385) T ss_pred hhhh-hcCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCCceEEEEEcCCceE-EEEEEcCCceEEEEc Confidence 4444 499999999999999999999999999999865 5678999998888877665543 444445566778899 Q ss_pred cceEEEecCcCc--ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHHHHHhc- Q lcl|Aclame:pro 161 NMDMLHFKHIVA--SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDFKQYYE- 234 (409) Q Consensus 161 ~~~vih~~~~~~--~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 234 (409) ++||||||++++ .++.+|+||+.++..++.+..++++++.+.+.++ ++++++.++.+ ++++.++++++|++.++ T Consensus 147 ~~eiihik~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~gil~~~~~~~~~e~~~~~~~~~~~~~~~ 226 (385) T protein:vir:10 147 QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (385) T ss_pred cccEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCc Confidence 999999998654 4577899999999999999999999988877664 67778777655 57899999999999885 Q ss_pred -CCCceeecCCCceeeeccCChhhHHHH-HHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 -ENGGILFQEPGVEIEPLPKKYVSEDIV-ASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 235 -~~~~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) ++|+++|+++|++|+++++++.|+|++ |.+++++++||++|||||++|++.+ ++++++.|++.. ++..+|.|+++ T Consensus 227 ~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~sn~eq~~~-~~~~~l~P~~~ 305 (385) T protein:vir:10 227 DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKA-TYLANLNSYVN 305 (385) T ss_pred cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCcccccHHHHHH-HHHHHHHHHHH Confidence 578899999999999999999999975 9999999999999999999998754 457888887654 55679999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeecccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGDLYP 388 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~ 388 (409) .|+++|+++|+.+ .++||++++++.|.+++++++++++++|++|+||+|+++|++|+|+ +|.+.++.| T Consensus 306 ~ie~~l~~~l~~~-------~~~f~~~~ll~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~p~~~~~~~~~~~~--- 375 (385) T protein:vir:10 306 PIVDELRLKMNAP-------DLELDIKDMLDVDDSALINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTT--- 375 (385) T ss_pred HHHHHHHHhhCCc-------eEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCccCCCCCccccCccc--- Confidence 9999999999753 4899999999999999999999999999999999999999999975 455554444 Q ss_pred hhcccccccccCCCCCCCC Q lcl|Aclame:pro 389 IDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 389 ~~~~~~~~~~~~gg~~n~~ 407 (409) ..||||+|++ T Consensus 376 ---------~~~~g~~~dn 385 (385) T protein:vir:10 376 ---------QVKGGDEGDN 385 (385) T ss_pred ---------ccCCCCCCCC Confidence 2467777777 No 61 >protein:vir:78310 Length: 376 # NCBI annotation: gp3 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468642;genbank:gi:157325220;genbank:GeneID:5601655 Probab=100.00 E-value=1.4e-76 Score=436.52 Aligned_cols=365 Identities=15% Similarity=0.158 Sum_probs=291.3 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++++.+.+.... .....++ ..+..++.+.|+++++|++||++||+++|++||++++++...+|++ T Consensus 1 Mg~f~~l~~~~~~---------~~~~~~~-----~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~~p~~~~~~~~~~~~~l 66 (376) T protein:vir:78 1 MGFFSELFKRNKE---------IEWMWDL-----DFLEDKTTKVYLKKMALNTCVKHIARTIAKSDFRLKNGETSVRDKL 66 (376) T ss_pred CchhhhhhccCCc---------cccccch-----hhccccchhhhhhhHHHHHHHHHHHHhhcccceeeccccccccchH Confidence 9996543221111 1111111 1234567788999999999999999999999999999988889999 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (409) .++|+.+||++||+++||+.++.++++.||+|+++.|+..|.+.+++|+.+..+.......-.. ...+....|+ T Consensus 67 ~~ll~~~PN~~~t~~~f~~~~~~~lll~Gn~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 140 (376) T protein:vir:78 67 YYKLNIRPNTDMSSSSFWEKVIYKLIYDNECLIVLSDTDDFLIADSYVRKEFAFFPDVFEGVTV------KDYRYNRNFS 140 (376) T ss_pred HHHHhhccccCCCHHHHHHHHHHHHhHcCcEEEEEEeCCCeeeccceeecccceeeeeeeeeee------ecceeeeeec Confidence 9999999999999999999999999999999999999999999999999987765433221111 1112345799 Q ss_pred cceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcC----C Q lcl|Aclame:pro 161 NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEE----N 236 (409) Q Consensus 161 ~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 236 (409) ++||+|+++........+.++.+.+...+.. +.+.....++.++..++..+..+++++.++++++|++.+++ . T Consensus 141 ~~evih~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~g~~~~~ 217 (376) T protein:vir:78 141 MDDVIFLEYGNERLSAFTDGMFEDYGELFGK---MIRAQMRNFQIRGAVNFKMAGVADKDKQTKLQEYIDKVYASFNNNE 217 (376) T ss_pred cccEEEeccCCCCchhhhhHHHHHHHHHHHH---HHHHHHhcCCCceeEEEccCCCCCHHHHHHHHHHHHHHhccccccC Confidence 9999999976543333333444444333322 22223334444566677788899999999999999998863 3 Q ss_pred CceeecCCCceeeeccCChhh-----HHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 237 GGILFQEPGVEIEPLPKKYVS-----EDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQ 311 (409) Q Consensus 237 ~~~~vl~~g~~~~~l~~~~~d-----~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ 311 (409) ++++++++|++|+++++++.| +||+|.++++.++||++|||||.+|+ +++++.|++.+.|+.+||.|++++ T Consensus 218 ~~v~~l~~g~~~~~l~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVPp~~l~----~~~s~~e~~~~~f~~~~l~P~~~~ 293 (376) T protein:vir:78 218 IAIVPQLEGFNYEEFGTTSVNNSQSFDEVKKLRKEMIDYVASILGIPSSLLH----GDMADLSNNMKAYMEYCIDPLTKK 293 (376) T ss_pred cceEEcCCCceEEeeccCccccchhHHHHHHHHHHHHHHHHHHhCCCHHHhC----CCCCCHHHHHHHHHHHHHHHHHHH Confidence 457889999999999998866 49999999999999999999999996 468999999999999999999999 Q ss_pred HHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC--CEEeecccccch Q lcl|Aclame:pro 312 YEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG--DKPLISGDLYPI 389 (409) Q Consensus 312 ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g--d~~~~~~n~~~~ 389 (409) ||++||++||++. +.+++|+++.+++.|.+++++++.+++++|++|+||+|+++|+||+||| |++++|+|++|+ T Consensus 294 ie~~l~~kll~~~----~~~~~~~~~~ll~~d~~~~~~~~~~~~~~G~~t~NE~R~~lg~~p~~~g~~d~~~~~~n~~~~ 369 (376) T protein:vir:78 294 LEDELNAKLFTFS----EFLAGEHIKIIHKKDIIENAEAVDKLVASGSFNRNEVRELLGAERVDNPELDKYLITKNYQSA 369 (376) T ss_pred HHHHHHhhhCCcc----cceecccchhhcccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceeeeccCceeh Confidence 9999999999874 3567889999999999999999999999999999999999999999876 999999999997 Q ss_pred hcccccccccCCCCCC Q lcl|Aclame:pro 390 DTPLELRKSLKGGDKN 405 (409) Q Consensus 390 ~~~~~~~~~~~gg~~n 405 (409) +. |||+. T Consensus 370 ~~---------~~e~g 376 (376) T protein:vir:78 370 DE---------GGEDG 376 (376) T ss_pred hc---------cccCC Confidence 63 22222 No 62 >protein:vir:7407 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839924;genbank:gi:30089894;genbank:GeneID:1260681 Probab=100.00 E-value=9.3e-76 Score=431.94 Aligned_cols=380 Identities=14% Similarity=0.135 Sum_probs=299.2 Q ss_pred CcchhhhhhhhhhhhcccccCccccc---ccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKL---YDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVN 77 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 77 (409) |+++++|.|...+............. ..+..+.+.++..|+.+.++++++|++||++||++||++|++++++.. T Consensus 3 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~al~~~~v~~~v~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:74 3 LPILNFINQTNDPPEAGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccCcccccccccccccCchhhhhhhccCCCCcccchhhhhcchHHHHHHHHHHHhhccCceeeccchh--- Confidence 99999988865543322222211111 123344556778889999999999999999999999999999987543 Q ss_pred chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCC---C Q lcl|Aclame:pro 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT---G 154 (409) Q Consensus 78 ~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~---g 154 (409) ..|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+||+|++|++..+.++...+|.++... + T Consensus 80 ----~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~G~~~~L~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~ 155 (392) T protein:vir:74 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) T ss_pred ----hhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCCccc Confidence 347789999999999999999999999999999999999999999999999999999988888888776543 3 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC--CHHHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV--STEKRQQVLEDFK 230 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~ 230 (409) ..+.++++||||++.+++.+..+|+||+.++..++.++.++++++.+.+.++ ++++++.++.. ++++++++++.|. T Consensus 156 ~~~~~~~~evih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~~il~~~~~~~~~~~~~~~~~~~~~ 235 (392) T protein:vir:74 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFM 235 (392) T ss_pred eeEEEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHh Confidence 4678999999999998887778999999999999999999999998877665 56777776543 4444444444443 Q ss_pred HHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 231 QYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 231 ~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) . ..++|+++|+++|++|++++++++|+||+|.++++.++||++|||||++||+..+ +++.+++.++|+.++|.|+++ T Consensus 236 ~-~~n~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVPp~~lg~~~~--~~~~~e~~~~~~~~~l~p~~~ 312 (392) T protein:vir:74 236 K-RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQGD--QQSSIQQISGMYASALNRYLR 312 (392) T ss_pred c-cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCC--cccHHHHHHHHHHHHHHHHHH Confidence 2 2367899999999999999999999999999999999999999999999987543 335567788999999999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchh Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPID 390 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~ 390 (409) .||++||++|++. ++||...+.+.|.+++++.+.+++++|++|+||+|+++...++. -+......|+.| T Consensus 313 ~ie~~l~~~l~~~--------~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~near~~~~~~g~~-pne~r~~enl~~-- 381 (392) T protein:vir:74 313 PAISELEYKLSDH--------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYI-PKDLPAPENTNK-- 381 (392) T ss_pred HHHHHHHHhccch--------hcccchhhhcCCHHHHHHHHHHHHhCCCcCHHHHHHHHHhCCCC-ccccchhcCCCC-- Confidence 9999999999753 56888899999999999999999999999999999987222211 011122222222 Q ss_pred cccccccccCCCCCCCCCC Q lcl|Aclame:pro 391 TPLELRKSLKGGDKNVNES 409 (409) Q Consensus 391 ~~~~~~~~~~gg~~n~~~~ 409 (409) .+|||.|+-== T Consensus 382 --------~~~Gd~~~p~p 392 (392) T protein:vir:74 382 --------KTTGQSNEPVP 392 (392) T ss_pred --------CCCCCCCCCCC Confidence 12222100000 No 63 >protein:vir:9641 Length: 395 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795403;genbank:gi:28876176;genbank:GeneID:1257709 Probab=100.00 E-value=1.7e-75 Score=430.54 Aligned_cols=375 Identities=11% Similarity=0.107 Sum_probs=283.3 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc--cccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--VVNT 78 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~--~~~~ 78 (409) |+++++|++.+...... . ........++.+.|+++++|++||++||++||++||+++++++ ...+ T Consensus 1 Mgl~d~~~~~~~~~~~~--------~-----~~~~~~~~~~~~~~l~~~~v~~~i~~Ia~~ia~lp~~v~~~~~~~~~~~ 67 (395) T protein:vir:96 1 MGILDFFSFKKSGTLSD--------D-----DSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRIKAPEKLTENQK 67 (395) T ss_pred CcchhhhcCCCCccccc--------c-----ccccchhhhcchhhhhhHHHHHHHHHHHHhhccceeEEEeCCccccccc Confidence 99998876643321110 0 1112234466788999999999999999999999999998754 3568 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEE Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLI 158 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~ 158 (409) ++.++|+.+||++||+++||+.++.++++.||+|+++.|+..+.+...++.... . .+................ T Consensus 68 ~~~~lL~~~PN~~~t~~~f~~~l~~~lll~Gna~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~v~~~~~~~~~~ 140 (395) T protein:vir:96 68 DWLYWINTKANPNQSASQFWVEVVQKLLVDGETLIFVIPGKGIYVADAFTQDKK-----L--SGNKFKVSRVQGQTYEKI 140 (395) T ss_pred hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEcCCceecCCccccccc-----c--ccceeeeeeeccceeeeE Confidence 899999999999999999999999999999999999998865433333322111 1 111111111111123467 Q ss_pred EccceEEEecCcCcccccccccHHHHHHHHHHHHHHH------HHHHHHhcCCCc--eeEEecCCcCCHHHHHHHHHHHH Q lcl|Aclame:pro 159 VHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV------RTFNLTEMQKPD--SFMLKYGSNVSTEKRQQVLEDFK 230 (409) Q Consensus 159 ~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 230 (409) +++++|+|+|+.++....++.+++......+....+. .++....+.+++ ..++...+...++..++..+++. T Consensus 141 ~~~~dvih~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (395) T protein:vir:96 141 FTFDQVIYLKNDNSDLMLKVESLWEEYGELLGHVINNQKIANQIRFTMTPPKDKVRERAQENSDGGRQPKSDKDFFKRTI 220 (395) T ss_pred eccCceEEecccCCccccccccccchHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeccCchhhHHHHHHHHHHHH Confidence 9999999999887766666666666555544443322 233344444443 45555555555555555555444 Q ss_pred HHh-cCCCceeecCCCceeeeccCChhhHHHHHHHHHH------HHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 231 QYY-EENGGILFQEPGVEIEPLPKKYVSEDIVASENLT------RERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 231 ~~~-~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~------~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) +.. .++++++++++|++|+++++++.|+|++|.+++. .++||++|||||++|+ +++++.|++.+.|+++ T Consensus 221 ~~~~~~~~~v~~l~~g~~~~~l~~~~~d~q~~e~~~~~~~~~~~~~eIa~~fgVPp~~l~----~~~sn~e~~~~~f~~~ 296 (395) T protein:vir:96 221 EKIRTESVVGIPVTANTNYEEYGSKNTGSVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH----GDIADNQKNYELLLEG 296 (395) T ss_pred HHhhcCCcceEEccCCceeEecccChhhhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCCccHHHHHHHHHHH Confidence 333 3566788899999999999999999999888776 4799999999999996 5789999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL 381 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~ 381 (409) +|.|++++||++|+++||++.++..+.+ |+++.+++.|.+++++.+.+++++|++|+||+|+++|+||+|| ||+++ T Consensus 297 ~L~P~~~~ie~~l~~~Ll~~~e~~~~~~--f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~pi~~~~gD~~~ 374 (395) T protein:vir:96 297 PIESLITNIVDGLEYAIFDKSETLEGSF--IKVTGLKNYDLFSISSQADKLISSGFVFIDEVREEIGLPELPDGLGKVLY 374 (395) T ss_pred HHHHHHHHHHHHHHhhcCChhhhcCcee--EeecchhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceee Confidence 9999999999999999999877765544 6778999999999999999999999999999999999999976 99999 Q ss_pred ecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +|+|++|++. +|||+|++.+ T Consensus 375 ~~~N~~~~~~--------~gge~~~~~~ 394 (395) T protein:vir:96 375 MTKNYESVLE--------RGGEVDEEVE 394 (395) T ss_pred ecccceechh--------ccCCCCCCCC Confidence 9999999863 6777766666 No 64 >protein:vir:100882 Length: 383 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358762;genbank:gi:78000027;genbank:GeneID:3726153 Probab=100.00 E-value=9.5e-75 Score=426.39 Aligned_cols=373 Identities=16% Similarity=0.222 Sum_probs=300.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++++.+...+.. ...+........... .+++.....|+.+.|+++++|++||++||+++|++||++++. .. T Consensus 1 Mg~~~~~~~~k~~-~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~------~~ 72 (383) T protein:vir:10 1 MGLLTPKNFSKRN-AKNMVYPSNPAFFTT-TVGGMQLSYVSALSALQNTNVYSVINRIASDVSSAHFKTENT------AT 72 (383) T ss_pred CCccccccccccc-ccccccccchhhhhh-hccCccccccchhHhhcchHHHHHHHHHHHhhccCceeeccc------ch Confidence 9997643211111 111222221111111 122334556788999999999999999999999999998643 34 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (409) .++|+ +||++||+++||+.++.+++++||||++++|+ +.+++|+++.+|++..+.++.. +++.....|..+.|+ T Consensus 73 ~~ll~-~PN~~~t~~~f~~~~~~~l~l~Gn~~~~i~~~----~~~~~p~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~ 146 (383) T protein:vir:10 73 LNRLE-SPSSLIGRFSFWQGALMQLCLSGNDYIPLVGQ----NLEHIPNSDVQINYLPGNMGIV-YTVLESNDRPKMVLR 146 (383) T ss_pred hhhhh-CCCCCCCHHHHHHHHHHHhhhcCCeEEEEEcC----ceeEeecCcceEEEEEcCCceE-EEEEEcCCceEEEEc Confidence 45555 89999999999999999999999999999865 5678889888888877665543 444455667788999 Q ss_pred cceEEEecCcCc--ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHHHHHhc- Q lcl|Aclame:pro 161 NMDMLHFKHIVA--SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDFKQYYE- 234 (409) Q Consensus 161 ~~~vih~~~~~~--~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 234 (409) ++||+|+|++++ .++.+|+||+.++...+....++++++.+.+.++ ++++++.++.+ ++++.++++++|++.++ T Consensus 147 ~~evih~r~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~f~ng~~~~~il~~~~~~~~~e~~~~~~~~~~~~~~~ 226 (383) T protein:vir:10 147 QDQMLHFRLMPDPQYRYLIGRSPLESLQNALNLDDKASKSNMSAMENQINPAGKLTISNYLSDGKDLESAREEFEKANTG 226 (383) T ss_pred ccceEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHhCc Confidence 999999997654 3567899999999999999999999998877665 56777777655 58899999999999885 Q ss_pred -CCCceeecCCCceeeeccCChhhHHHH-HHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 -ENGGILFQEPGVEIEPLPKKYVSEDIV-ASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 235 -~~~~~~vl~~g~~~~~l~~~~~d~~~~-e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) |+|+++|+++|++|++++.++.|+|++ |.+++++++||++|||||++||..+ +.++++.|++...| ..+|.|+++ T Consensus 227 ~n~~~~~vl~~g~~~~~l~~~~~d~~~l~e~~~~~~~~Ia~afgVPp~~lg~~~~~~~~~sn~eq~~~~~-~~~l~P~~~ 305 (383) T protein:vir:10 227 DNSGRLMVLPDGFDYTQLEMKTDVFKALADNSAYSADQISKAFGVPSDILGGGTSTESQHSNIDQIKATY-LANLNSYVN 305 (383) T ss_pred cccCCccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHHhCCCHHHcCCccCCCCccccHHHHHHHH-HHHHHHHHH Confidence 578999999999999999999999974 9999999999999999999998754 55788888887655 569999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchh Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPID 390 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~ 390 (409) .||++|+++|+. .+++||++.+++.|.+++++++.+++++|++|+||+|+++|++|+|+||.+....+.. T Consensus 306 ~ie~~l~~~l~~-------~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~t~nE~R~~lg~~p~~~~d~~~~~~~~~--- 375 (383) T protein:vir:10 306 PIVDELRLKMNA-------PDLELDIKDMLDVDDSILINQVSNLAKSGVLGAEQAQFILTRSGFLPDNLPEFKPLTN--- 375 (383) T ss_pred HHHHHHHHhhCC-------ceEEeechhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccCCcccccCCCcc--- Confidence 999999999974 3589999999999999999999999999999999999999999999999765544332 Q ss_pred cccccccccCCCCCC Q lcl|Aclame:pro 391 TPLELRKSLKGGDKN 405 (409) Q Consensus 391 ~~~~~~~~~~gg~~n 405 (409) ..||||+. T Consensus 376 -------~~~gGd~e 383 (383) T protein:vir:10 376 -------ETKGGDDK 383 (383) T ss_pred -------cCCCCCCC Confidence 24566555 No 65 >protein:vir:4952 Length: 386 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049928;genbank:gi:9632899;genbank:GeneID:1262075 Probab=100.00 E-value=6.4e-75 Score=427.33 Aligned_cols=379 Identities=19% Similarity=0.217 Sum_probs=314.1 Q ss_pred CcchhhhhhhhhhhhcccccCcc-ccccccc-ccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSA-SKLYDFS-PWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNT 78 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~ 78 (409) |++++.+.+.... ....... ....... .....++..|+.+.++++++|++||++||++||++|++++++. T Consensus 1 M~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~~p~~~~~~~----- 72 (386) T protein:vir:49 1 MPIFNITNLATES---PPINQESFFDIADSDFLASLNSSEWVSAENALKNSDLFSIISQLSNDLATAKITTSRKQ----- 72 (386) T ss_pred CchhhhhccCCCC---cccchhhhhhhhhccccccccCCceechhhhhccHHHHHHHHHHHHHhhhCceeeccch----- Confidence 9997665543221 1111111 1111111 1123345678999999999999999999999999999998754 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---CCCe Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---ATGN 155 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~~g~ 155 (409) ...|+.+||++||+++||+.++.+++++||||++++|+..|++.+|+|++|..|++..+.++...+|.+.. ..+. T Consensus 73 --~~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~ 150 (386) T protein:vir:49 73 --LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNDNGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPHIAP 150 (386) T ss_pred --hhhhhhccCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEecCceeEEEEcCCCceEEEEEEEcCccccc Confidence 34578899999999999999999999999999999999999999999999999999999988887777754 3456 Q ss_pred EEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 156 KLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 156 ~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (409) .+.|+++||||++.+++.+.++|+||+.++...+.+..++++++...+.++ ++++++.++.+++++.+++++.|+... T Consensus 151 ~~~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 230 (386) T protein:vir:49 151 KQHVPQNDILHFRLLSVDGGLTSVSPLMALGREFNIQKASDKLTISALKNALNANGILKIKGGGLLDFKTKVSRSRQAMK 230 (386) T ss_pred eeEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHccCCccEEEEeCCCCChHHHHHHHHHHHHhc Confidence 788999999999999888889999999999999999999999988777664 678899999999999999999999988 Q ss_pred cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYE 313 (409) Q Consensus 234 ~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie 313 (409) +++|+++|+++|++|++++.+++|+|++|.++++.++||++|||||.+|++.. .++++.+ +.+.|+..++.|+++.|+ T Consensus 231 ~n~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVPp~~lg~~~-~~~~~~~-~~~~~~~~~i~~~l~~i~ 308 (386) T protein:vir:49 231 QMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESIVGGDG-DQQSSLE-MIYNIYFKSVSRYLRPFV 308 (386) T ss_pred cCCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC-CccchHH-HHHHHHHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999998643 3445554 456889999999999999 Q ss_pred HHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccc Q lcl|Aclame:pro 314 EEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPL 393 (409) Q Consensus 314 ~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~ 393 (409) ++|+++|+. +++||...+++.|..+++..+.+++++|++|+||+|++++..++...+... ...+ T Consensus 309 ~~~~~~l~~--------~~~~~~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~~~~~~~~~~---~~~~----- 372 (386) T protein:vir:49 309 SEMSKKLSC--------EVDVDISPAVDPTGSNYISLINSMVKSGTLAQNQGLYILQQAEILPKELPD---GKNP----- 372 (386) T ss_pred HHHHHHhcc--------hhcccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHhhCCCCCCcCcc---hhcc----- Confidence 999999864 467899999999999999999999999999999999999876653333211 1000 Q ss_pred ccccccCCCCCCCCC Q lcl|Aclame:pro 394 ELRKSLKGGDKNVNE 408 (409) Q Consensus 394 ~~~~~~~gg~~n~~~ 408 (409) .....||||.|++| T Consensus 373 -~~~~~~gGd~~~~~ 386 (386) T protein:vir:49 373 -NRTSLKGGEINEQD 386 (386) T ss_pred -CCCCCCCCCCCCCC Confidence 11246899999888 No 66 >protein:vir:98643 Length: 395 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039921;genbank:gi:126011096;genbank:GeneID:4818479 Probab=100.00 E-value=4.7e-75 Score=428.06 Aligned_cols=375 Identities=11% Similarity=0.101 Sum_probs=282.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc--cccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--VVNT 78 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~--~~~~ 78 (409) |+++++|.+.++.... .. ..+.....++.+.|+++++|++||++||++||++|++++++++ ...+ T Consensus 1 MGlf~~~~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~v~~~I~~ia~~iA~lp~~~~~~~~~~~~~~ 67 (395) T protein:vir:98 1 MGILDFFSFKKSGTLS--------DD-----DSGSTTSEKLTNVVLKEDALYKCVNYLARIISKSTFRLKTPEKLTENQK 67 (395) T ss_pred CcchhhhcCCCccccc--------cc-----ccchhhhhhcchhhhhhHHHHHHHHHHHHHHhhCceeEEecCCcccccc Confidence 9998887654332110 00 1112234456778999999999999999999999999998654 4568 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEE Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLI 158 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~ 158 (409) ++.++|+.+||++||+++||+.++.++++.||||+++.++..+.+. +..+... ...+...........+..+. T Consensus 68 ~~~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 140 (395) T protein:vir:98 68 DWLYWINTKANPNQSASQFWVEVIQKLLVDGETLIFVIPGKGIYVA------DSFTQDK-KISGSQFKVSRVQGQTYEKT 140 (395) T ss_pred hHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeCCceecC------Ccccccc-cccCcccceeeecCceeeeE Confidence 8999999999999999999999999999999999999988643322 2222211 11111111111111222467 Q ss_pred EccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHH--HHHhcCCC--ceeEE-ecCCcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 159 VHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF--NLTEMQKP--DSFML-KYGSNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 159 ~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~--~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 233 (409) +++++|+|+|+.++....++.+++......+.....+... ..+.+.+. +++.. ......++++.++.++.|++.. T Consensus 141 ~~~~evih~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (395) T protein:vir:98 141 FTFDQVIYLKNDNSDLMSKVESLWEEYGELLGHVINNQKIANQIRFTMIPPKDKVRERAQENSDGGRQSKSDKDFFKRTV 220 (395) T ss_pred ecCccEEEecCCCCCccccccchhhhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccCCcHHHHHHHHHHHHHHH Confidence 8999999999877655566666666666655544433322 22333222 22222 2233345666666676676655 Q ss_pred c----CCCceeecCCCceeeeccC------ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 234 E----ENGGILFQEPGVEIEPLPK------KYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 234 ~----~~~~~~vl~~g~~~~~l~~------~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) + ++++++++++|++|+++++ ++.++|+.+.++++.++||++|||||++|+ +++++.|++.+.|+++ T Consensus 221 ~~~~~~~~~v~~l~~g~~~~~l~~~~~~~~~~~~~q~~e~~~~~~~~Ia~~fgVP~~~l~----~~~sn~e~~~~~f~~~ 296 (395) T protein:vir:98 221 EKIRTESVVGIPVTANTNYEEYGSKNTGAVKSYVDDIKKLKDQYMAEFAEMLGIPISLLH----GDIADNQKNYELLLEG 296 (395) T ss_pred hhhhcCCcceeecCCCceeEecccccccccChhHHHHHHHHHHHHHHHHHHhCCCHHHhc----CCcccHHHHHHHHHHH Confidence 4 4556888999999999985 467889999999999999999999999995 5789999999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL 381 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~ 381 (409) ||.|++++||++||++||++.++..+.+ |+++++++.|.+++++++.+++++|++|+||+|+++|+||+|| ||+++ T Consensus 297 tl~P~~~~ie~~l~~kll~~~~~~~g~~--f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~Pi~~~~gD~~~ 374 (395) T protein:vir:98 297 PIESLITNIVDGLEYAIFDKSETLQGSF--IKVTGLKNYDLFSISNQADKLISSGFVFIDEVREEIGLPELPDGLGKVLY 374 (395) T ss_pred HHHHHHHHHHHHHHHhcCChhhhcCcce--eeehhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCCCCceee Confidence 9999999999999999999887766654 6677999999999999999999999999999999999999976 99999 Q ss_pred ecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++|++|++ .+|||+|++++ T Consensus 375 ~~~n~~~~~--------~~gge~~~~~~ 394 (395) T protein:vir:98 375 MTKNYESVL--------ERGGEVDEEVE 394 (395) T ss_pred ecccceecc--------cccCCCCCCCC Confidence 999999986 36777666666 No 67 >protein:vir:3989 Length: 392 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116497;genbank:gi:14251130;genbank:GeneID:921299 Probab=100.00 E-value=1.7e-74 Score=425.03 Aligned_cols=377 Identities=15% Similarity=0.148 Sum_probs=297.1 Q ss_pred CcchhhhhhhhhhhhcccccCccccc--c-cccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKL--Y-DFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVN 77 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 77 (409) |++++++.|................. . .+..+.+.++..|+.+.++++++|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:39 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh--- Confidence 99998887754433222111111111 1 12334455677889999999999999999999999999999986543 Q ss_pred chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCC--- Q lcl|Aclame:pro 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG--- 154 (409) Q Consensus 78 ~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g--- 154 (409) ..|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+|++|++|++..+.++...+|.++..++ T Consensus 80 ----~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~ 155 (392) T protein:vir:39 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) T ss_pred ----hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCcccc Confidence 4577899999999999999999999999999999999999999999999999999999988888888765433 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCc--CCHHHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSN--VSTEKRQQVLEDFK 230 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~ 230 (409) ..+.++++||||++++++.+..+|+||+.++..++.++.++++++...+.++ ++++++.++. .++++++++++.+. T Consensus 156 ~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~ 235 (392) T protein:vir:39 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFM 235 (392) T ss_pred eeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHh Confidence 4578999999999998887778999999999999999999999988777664 5667777654 34444444444444 Q ss_pred HHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 231 QYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 231 ~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) . ..++|+++|+++|++|++++++++|+||+|.+++++++||++|||||++||+.. .+++.+++.++|+.++|.|+++ T Consensus 236 ~-~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~--~~~~~~~~~~~f~~~~l~P~~~ 312 (392) T protein:vir:39 236 K-RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG--DQQSSIQQISGMYASALNRYLR 312 (392) T ss_pred c-cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CcccHHHHHHHHHHHHHHHHHH Confidence 3 246789999999999999999999999999999999999999999999998643 3345677889999999999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh---CCCCCCCCCEEeeccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE---DLPPVEGGDKPLISGDLY 387 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~gd~~~~~~n~~ 387 (409) .|++++|++|++. ++||...+.+.|..++++.+.+++++|++|+||+|+++ |+.|. .+....|+. T Consensus 313 ~ie~~l~~~L~~~--------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~----e~r~~e~l~ 380 (392) T protein:vir:39 313 PAISELEYKLSDH--------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK----DLPAPENTN 380 (392) T ss_pred HHHHHHHHhcccc--------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCcc----ccchhcCCC Confidence 9999999999753 56788888899999999999999999999999999987 44331 111112222 Q ss_pred chhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 388 PIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 388 ~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |+ +|||.|+--= T Consensus 381 ~~----------~~Gd~~~p~p 392 (392) T protein:vir:39 381 KK----------TTGQSNEPVP 392 (392) T ss_pred CC----------CCCCCCCCCC Confidence 21 2222111111 No 68 >protein:vir:1023 Length: 392 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076677;genbank:gi:13095786;genbank:GeneID:920364 Probab=100.00 E-value=1.7e-74 Score=425.03 Aligned_cols=377 Identities=15% Similarity=0.148 Sum_probs=297.1 Q ss_pred CcchhhhhhhhhhhhcccccCccccc--c-cccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKL--Y-DFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVN 77 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 77 (409) |++++++.|................. . .+..+.+.++..|+.+.++++++|++||++||++||++|++++++.. T Consensus 3 m~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~ia~lp~~~~~~~~--- 79 (392) T protein:vir:10 3 LPILNFINQTNDPPEVGSVQSYFPDGNDAQIMESLLGDNNEWVSARAALRNSDLFSIILQLSSDLAIVKINAEKKKN--- 79 (392) T ss_pred chhhhhhhcccccccccccccccccCchhhhhhhhcCCCCceechHHhhccHHHHHHHHHHHHhhccCceeeccchh--- Confidence 99998887754433222111111111 1 12334455677889999999999999999999999999999986543 Q ss_pred chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCC--- Q lcl|Aclame:pro 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATG--- 154 (409) Q Consensus 78 ~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g--- 154 (409) ..|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+|++|++|++..+.++...+|.++..++ T Consensus 80 ----~~l~~~PN~~~t~~~f~~~~~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~~~~~~~~~~~~y~~~~~~~~~~ 155 (392) T protein:vir:10 80 ----QGIIDNPSTNANKHGFWQSMFAQLLLGGEAFAYRWRNANGADMKWEYLRPSQVNTYYFEYENGMYYNITFDDPKIE 155 (392) T ss_pred ----hhHhhcCCCCCCHHHHHHHHHHHhhhcCcEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCcccc Confidence 4577899999999999999999999999999999999999999999999999999999988888888765433 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCc--CCHHHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSN--VSTEKRQQVLEDFK 230 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~ 230 (409) ..+.++++||||++++++.+..+|+||+.++..++.++.++++++...+.++ ++++++.++. .++++++++++.+. T Consensus 156 ~~~~~~~~eiih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~~~~~~~~~~~~~~~~ 235 (392) T protein:vir:10 156 PILQAPQSDLIHMKLLSIDGGKTGISPLYSLRRESKIQRASDRLTISSLNSSLNVPGVLTVKGGGLLSDKDKASRSRSFM 235 (392) T ss_pred eeEEEccccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCchHHHHHHHHHHHh Confidence 4578999999999998887778999999999999999999999988777664 5667777654 34444444444444 Q ss_pred HHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 231 QYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK 310 (409) Q Consensus 231 ~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~ 310 (409) . ..++|+++|+++|++|++++++++|+||+|.+++++++||++|||||++||+.. .+++.+++.++|+.++|.|+++ T Consensus 236 ~-~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~--~~~~~~~~~~~f~~~~l~P~~~ 312 (392) T protein:vir:10 236 K-RSRSGGPVVLDDLEEFTALEIKSNVAQLLSQTDWTSKQYAKVYGLPDSYIGGQG--DQQSSIQQISGMYASALNRYLR 312 (392) T ss_pred c-cccCCCeeecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CcccHHHHHHHHHHHHHHHHHH Confidence 3 246789999999999999999999999999999999999999999999998643 3345677889999999999999 Q ss_pred HHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh---CCCCCCCCCEEeeccccc Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE---DLPPVEGGDKPLISGDLY 387 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~gd~~~~~~n~~ 387 (409) .|++++|++|++. ++||...+.+.|..++++.+.+++++|++|+||+|+++ |+.|. .+....|+. T Consensus 313 ~ie~~l~~~L~~~--------~~~d~~~~~~~d~~~~~~~~~~l~~~g~~t~nE~r~~l~~~g~~p~----e~r~~e~l~ 380 (392) T protein:vir:10 313 PAISELEYKLSDH--------ISVNMRPAIDPLGDNYLSTISTATRWGALAENQATFVLQEAGYIPK----DLPAPENTN 380 (392) T ss_pred HHHHHHHHhcccc--------ccccchhhhccCHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCcc----ccchhcCCC Confidence 9999999999753 56788888899999999999999999999999999987 44331 111112222 Q ss_pred chhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 388 PIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 388 ~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |+ +|||.|+--= T Consensus 381 ~~----------~~Gd~~~p~p 392 (392) T protein:vir:10 381 KK----------TTGQSNEPVP 392 (392) T ss_pred CC----------CCCCCCCCCC Confidence 21 2222111111 No 69 >protein:vir:4828 Length: 382 # NCBI annotation: ORF24 # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038325;genbank:gi:9634651;genbank:GeneID:1262630 Probab=100.00 E-value=2e-74 Score=424.66 Aligned_cols=377 Identities=19% Similarity=0.234 Sum_probs=304.1 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++++.+...+......+..... ..+ ..+..++..++.+.++++++|++||++||++||++||+++++. T Consensus 1 Mg~f~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~v~~~~~l~~~~v~~~i~~ia~~ia~~~~~~~~~~------- 69 (382) T protein:vir:48 1 MPIFNLATESPPDNQGGFFDVVD---SDF-LASLKGNEWVSAETALRNSDLFSIINQLSNDLATVKLITSRKK------- 69 (382) T ss_pred CccccccccCCcccccccccchh---hhc-cccccCCcccchHhhhccHHHHHHHHHHHHhhccCceeeecch------- Confidence 99965443322111111111000 011 1123345678889999999999999999999999999998764 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCC---CeEE Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT---GNKL 157 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~---g~~~ 157 (409) ...|+.+||++||+++|++.++.+++++||||++++|+..|++.+|+||+|++|++..+.++...+|.+...+ |..+ T Consensus 70 ~~~L~~~PN~~~t~~~f~~~l~~~l~l~Gna~~~i~rd~~G~~~~l~~i~~~~v~v~~~~~~~~~~y~~~~~~~~~~~~~ 149 (382) T protein:vir:48 70 LQGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNKDGIYYNITFDDPRIPPKQ 149 (382) T ss_pred hhhhhhhcCCCCCHHHHHHHHHHHhhhcCCEEEEEEECCCCcEEEEEEEcCceeEEEEcCCCCeEEEEEEecCcccccee Confidence 3468899999999999999999999999999999999999999999999999999999998888888776543 4567 Q ss_pred EEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 158 IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYYEE 235 (409) Q Consensus 158 ~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (409) .|+++||||++.+++.+.++|.||+.++..++....+++++....+.++ ++++++.++.+++++.+++++.|.+..++ T Consensus 150 ~~~~~evih~~~~~~~~~~~G~s~l~~~~~~i~~~~~~~~~~~~~~~ng~~p~~il~~~~~~~~e~~~~~~~~~~~~~~n 229 (382) T protein:vir:48 150 HVPQNDVLHFRLLSVDGGMTSVSPLMALSRELDIQKASGNLTINSLKNALNANGILKIKGGGLLDFKTKLSRSRQAMKQM 229 (382) T ss_pred EEcCccEEEecCCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhhccC Confidence 8999999999999888889999999999999999999999988877665 67899999999999999999999998899 Q ss_pred CCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 236 NGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEE 315 (409) Q Consensus 236 ~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ 315 (409) +|+++|+++|++|++++.++.|+|++|.+++++++||++|||||.+||..+ ++++.+++.+.|++.+|.|+++.|+++ T Consensus 230 ~g~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~afgVp~~~lg~~~--~~~~~~~~~~~~~~~~l~p~~~~i~~~ 307 (382) T protein:vir:48 230 QGGPLVLDDLEDFTPLEIKSNVSQLLKQADWTTGQFAKVYGIPDNVVGGQG--DQQSSLEMSSDLYSKAVSRYLRPFLSE 307 (382) T ss_pred CCCeeEcCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCC--CcccHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999999999999999999999999999999999999999999998754 345778889999999999999999999 Q ss_pred HHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccccc Q lcl|Aclame:pro 316 FNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLEL 395 (409) Q Consensus 316 ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~ 395 (409) |+++|+++.+... ...++ .+.......+.+++++|++|+||+|+.++..++ .+.+. |- ..+. T Consensus 308 l~~~l~~~~~~~~--~~~~~------~~~~~~~~~~~~l~~~g~~t~~e~r~~l~~~g~-------~~~~~-~~--~~~~ 369 (382) T protein:vir:48 308 LSQKLSCDVDADI--FPAVD------PTGSNYISRINSLVKTGTLAQNQGLYILQQAEI-------LPKEL-PN--GENP 369 (382) T ss_pred HHHHhcChhhhhh--hhhhc------cchhHHHHHHHHHhhcCccCHHHHHHHHhhCCC-------CCcch-hh--hhcC Confidence 9999998754322 22222 233444556778999999999999998854432 11111 11 1111 Q ss_pred ccccCCCCCCCCC Q lcl|Aclame:pro 396 RKSLKGGDKNVNE 408 (409) Q Consensus 396 ~~~~~gg~~n~~~ 408 (409) ....||||+|++| T Consensus 370 ~~~~~GGd~~~~~ 382 (382) T protein:vir:48 370 NSTLKGGEEDGQD 382 (382) T ss_pred CCCCCCCCCCCCC Confidence 2346899999999 No 70 >protein:vir:93867 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764264;genbank:gi:115315577;genbank:GeneID:5141561 Probab=100.00 E-value=8.6e-75 Score=426.62 Aligned_cols=353 Identities=15% Similarity=0.180 Sum_probs=276.9 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc------ Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK------ 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~------ 74 (409) |++++-+..+... ........... | .....+++.++|++||++||++||++||+++++.+ T Consensus 1 Mg~f~~~~~f~~~----~~~~~~~~~~~---~-------~~~~~~~~~~~v~~~i~~Ia~~iA~lp~~~~~~~~~~~~~~ 66 (378) T protein:vir:93 1 MNLFGKVVSFSRG----KLNNDTQRVTA---W-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) T ss_pred Cccchhhhhhhcc----ccCCCcceeee---c-------ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccccccc Confidence 9996554432211 11111111111 1 11234668889999999999999999999987542 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC-CceeEEEeeCCcceEEEEcCCcceeEEEE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY-HQPSKLFLLNPDVVEMLIENQSRELYYSI 149 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~-G~~~~l~~l~p~~v~~~~~~~~~~~~~~~ 149 (409) ...+++.++|+.+||++||+++||+.++.+++++||+|++++++.. |++..++|. T Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gn~~i~~~~~~~~g~~~~l~~~-------------------- 126 (378) T protein:vir:93 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFA-------------------- 126 (378) T ss_pred cccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEec-------------------- Confidence 2358899999999999999999999999999999999999877643 555444432 Q ss_pred EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHH Q lcl|Aclame:pro 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDF 229 (409) Q Consensus 150 ~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (409) +..+.|+++||||+|. +.+...|.||+..+...+... ...+.+.++++.++.+++++.++++++| T Consensus 127 ----~~~~~~~~~diih~r~--~~~~~~~~s~l~~~~~~i~~~---------~~~~~~~g~l~~~~~l~~~~~~~~~~~~ 191 (378) T protein:vir:93 127 ----DDKKEYKTEELVRLTS--PFYINEDTSILDNALASIQTK---------LEQGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred ----CCeeEeccceeEEecC--ccccchhhHHHHHHHHHHHHH---------HhcCcccceeeeCCcCCHHHHHHHHHHH Confidence 1235688999999995 346667999998877655322 1223456678889999999888888888 Q ss_pred HHHhc------CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYYE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 230 ~~~~~------~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) ++.++ ++++++++++|++|+++++++.++|+ +.++++.++||++|||||.+|++ ++.|++...|+.+ T Consensus 192 ~~~~~~~~~~~~~~~~~~l~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~g------~~~e~~~~~f~~~ 264 (378) T protein:vir:93 192 LTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------TATQEQQIYFYNS 264 (378) T ss_pred HHHHHHhhcccccccceEcCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------CcHHHHHHHHHHH Confidence 77653 46789999999999999999999997 66789999999999999999943 4458999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccc------eEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG 377 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~------~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g 377 (409) +|.|++++||++||++||++.++..+. .++||++.+++.|.+++++++.+++++|++|+||+|+++|+||+||| T Consensus 265 tl~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~fd~~~l~~~d~~~~~~~~~~~~~~G~~t~NE~R~~~gl~p~~gg 344 (378) T protein:vir:93 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) T ss_pred HHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999987765553 48899999999999999999999999999999999999999999999 Q ss_pred CEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 378 DKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 378 d~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |++++|+|++|++.+.+.+...+++.+.++++ T Consensus 345 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~ 376 (378) T protein:vir:93 345 DVYIANLNAVAVKNLSDLQGSRKDVTSTDETN 376 (378) T ss_pred CeeeeccccccccchhhhcCccCCCCCCCCCC Confidence 99999999999988876654433322211111 No 71 >protein:vir:80796 Length: 574 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1885 # MgeName: phiEF24C # Cross-refs: genbank:acc:YP_001504121;genbank:gi:158079308;genbank:GeneID:5666445 Probab=100.00 E-value=4.5e-74 Score=422.67 Aligned_cols=404 Identities=12% Similarity=0.074 Sum_probs=296.9 Q ss_pred Ccchhhhhhhhhhh----------hcccccCccc---ccccccccCCC--------Cc---------cc-cchhHHhhhH Q lcl|Aclame:pro 1 MAKENIVTRIKKKL----------IDNWIDQSAS---KLYDFSPWKNK--------SF---------WG-VINNTLETNE 49 (409) Q Consensus 1 M~~~~~~~r~~~~~----------~~~~~~~~~~---~~~~~~~~~~~--------~~---------~~-v~~~~~~~~~ 49 (409) |.+...-.|+.+.. .+.-...... ...+|...... +. .. +..-..+... T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~iv~~~i~~~~~ 106 (574) T protein:vir:80 27 MHLREIDTNVVNNEPYSMESIEKGMNGKTTAYMQPIIGEMSVNPGYKTKPSIRNSQDLHKTLKKFGNNIILNAIINTRSN 106 (574) T ss_pred cccchhhhhhhhccCCCHHHHHHhHhhhcccccchhhhhccccccccCcCccCCcccHHHHHHhhccChhHHHHHHHHHH Confidence 55544433332210 0000000000 01111111000 00 01 1112234456 Q ss_pred HHHHHHHHHHHhhccCceeEeeccc---------cccchhhhhhhc---cccCC-CCHHHHHHHHHHHHHhcCCeEEEee Q lcl|Aclame:pro 50 TIFSAITKLSNSMASLPLKMYEDYK---------VVNTEVSDLLTV---SPNNS-LSSFDFINQIETIRNEKGNAYVLIE 116 (409) Q Consensus 50 ~v~~~i~~ia~~ia~lp~~~~~~~~---------~~~~~~~~~L~~---~pn~~-~s~~~f~~~~~~~~l~~G~a~~~~~ 116 (409) .|++|+..|+.++|++||+|+.++. ...|++..+|.. .|||+ +|+.+|++.++.+++++||+|++++ T Consensus 107 ~V~~~~~~i~~~ia~lp~~i~~kd~~~~~~~~~~~~~~~l~~ll~~~~~~~nP~~~s~~ef~~~lv~~lll~Gnayi~i~ 186 (574) T protein:vir:80 107 QVSMYCKPARNSETGVGYEIRLKDIEAEPTSHDIANIKRIESFLENTAQFRDPNRDNFTTFCKKLVRATYMYDQVNFEKV 186 (574) T ss_pred HHHHHHHHHHhhhccCceEEEEeccCCCccchhhhhhhHHHHHHhccCCCCCCccccHHHHHHHHHHHHHhcCCeEEEEE Confidence 7788888888899999999986542 223556666654 35566 4888999999999999999999999 Q ss_pred ecCCCceeEEEeeCCcceEEEEcCCcce----eEEEEEcCCCeEEEEccceEEEecCcCcc---cccccccHHHHHHHHH Q lcl|Aclame:pro 117 RDIYHQPSKLFLLNPDVVEMLIENQSRE----LYYSIHAATGNKLIVHNMDMLHFKHIVAS---NMVQGISPIDVLKNTT 189 (409) Q Consensus 117 ~~~~G~~~~l~~l~p~~v~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~vih~~~~~~~---~~~~G~sp~~~~~~~i 189 (409) |+..|++.+|+||+|.+|++..+.++.. ..|++...++....|+++||||+++++.. ++.+|+||+.++...| T Consensus 187 r~~~G~~~~L~pl~p~~V~v~~d~~~~~~~~~~~y~~~~~g~~~~~~~~~eiih~~~~~~~~~~~~~~G~spi~~a~~~i 266 (574) T protein:vir:80 187 FDKDGNFIKFDTVDPTTIFLATNGEGKLIKNGERFVQVIDNRIVAKFNERELAFAVRNPRADIEVGQYGYPELEIALKQF 266 (574) T ss_pred ECCCCcEEEEEEEcCceeEEEEcCccccccCceEEEEEeCCceEEEEccccEEEEeccCCCCcccccccccHHHHHHHHH Confidence 9999999999999999999998877643 23444455667788999999999976443 3568999999999999 Q ss_pred HHHHHHHHHHHHhcCCC--ceeEEec--CCcCCHHHHHHHHHHHHHHhc---CCCce-eecCCCceeeeccCChhhHHHH Q lcl|Aclame:pro 190 DFDNAVRTFNLTEMQKP--DSFMLKY--GSNVSTEKRQQVLEDFKQYYE---ENGGI-LFQEPGVEIEPLPKKYVSEDIV 261 (409) Q Consensus 190 ~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~-~vl~~g~~~~~l~~~~~d~~~~ 261 (409) .++.++++++.++|.++ +++++.. +..+++++++++++.|++.++ |+|++ +++++|++|+++++++.|+||+ T Consensus 267 ~~~~~a~~~~~~~f~ng~~p~gil~~~~~~~ls~e~~~~lk~~~~~~~~G~~n~g~~~vl~~~G~~~~~l~~s~~D~qfl 346 (574) T protein:vir:80 267 IAHENTEVFNDRFFSHGGTTRGILHVKTGQQQSQQALDIFRREWRSSLAGINGSWQIPVVSAEDVKFVNMTPSANDMQFE 346 (574) T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEEccCChhHHHHH Confidence 99999999998887664 5556654 345899999999999999885 56776 4557899999999999999999 Q ss_pred HHHHHHHHHHHHHhcCChhhcCCcccC----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccce Q lcl|Aclame:pro 262 ASENLTRERVANVFQLPSIFLNARSNT----------NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRY 331 (409) Q Consensus 262 e~~~~~~~~Ia~~fgvp~~~l~~~~~~----------~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~ 331 (409) |++++++++||++|||||.+||..+.+ ++++.|++.+.|++++|.|+++.||++||++|++..+ .+.+ T Consensus 347 e~~~~~~~~Ia~afgVPp~~lG~~~~~t~~gs~~~~~n~sn~E~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~--~~~~ 424 (574) T protein:vir:80 347 KWLNYLINVISALYGIDPAEINFPNNGGATGSKGGSLNEGNSKEKMQASQNKGLQPLLRFIEDTVNTYIVAEFG--EKYQ 424 (574) T ss_pred HHHHHHHHHHHHHhCCCHHHhcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC--CceE Confidence 999999999999999999999876543 5789999999999999999999999999999998654 4678 Q ss_pred EEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccc------------- Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKS------------- 398 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~------------- 398 (409) ++|+..++...+...+ +..++.+|+||+||+|+++|+||+||||++++|+|+++++.+.+..+. T Consensus 425 ~~f~~~d~~~~~~~~~---~~~~~~~G~lT~NE~R~~lgl~Pi~gGD~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (574) T protein:vir:80 425 FQFRGGDLSAQLDKLK---IIEQEGKVFRTVNEIRHDKGLEPIKGGDVILNGVHIQAIGQALQEEQLEYQRSQDRLNRLL 501 (574) T ss_pred EEecccchhhHHHHHH---HHHHHhCCccCHHHHHHHhCCCCCCCCCEeeeccceeecccccccccCCccchhccccccc Confidence 8888777665443322 345788999999999999999999999999999999998765432210 Q ss_pred -cCCCCCCCC------CC Q lcl|Aclame:pro 399 -LKGGDKNVN------ES 409 (409) Q Consensus 399 -~~gg~~n~~------~~ 409 (409) ..+++.+.. ++ T Consensus 502 ~~~~~~~~~~~~~~p~~~ 519 (574) T protein:vir:80 502 ELSGGDVEQPEPEEPKDS 519 (574) T ss_pred cccCCCCCCCCCCCCCCc Confidence 011111100 00 No 72 >protein:vir:94002 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764318;genbank:gi:115315632;genbank:GeneID:5176589 Probab=100.00 E-value=1.4e-74 Score=425.52 Aligned_cols=351 Identities=15% Similarity=0.187 Sum_probs=276.1 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc------ Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK------ 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~------ 74 (409) |++|+-...+.. ........ .+..+ .....++++++|++||++||++||++|++|++..+ T Consensus 1 Mg~f~~~~~~~~----~~~~~~~~---~~~~~-------~~~~~~~~~~~v~~~v~~IA~~iA~lp~~~~~~~~~~~~~~ 66 (378) T protein:vir:94 1 MNLFGKVVSFSR----GKLNNDTQ---RVTAW-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) T ss_pred CCccccchhccc----ccccCCcc---eeeee-------ccchhHHHHHHHHHHHHHHHhhhhhCceeeEEEcccCcccc Confidence 999633222111 11111110 11111 11234677889999999999999999999876432 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC-CCceeEEEeeCCcceEEEEcCCcceeEEEE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLFLLNPDVVEMLIENQSRELYYSI 149 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~-~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~ 149 (409) ...|++.++|+.+||++||+++||+.++.+++++||+|++++++. .|++..++|. T Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~~~~~g~~~~l~p~-------------------- 126 (378) T protein:vir:94 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLSAPYVDLYAVFDDNTGELLDLLFA-------------------- 126 (378) T ss_pred cccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeeCCCceEEEEEec-------------------- Confidence 235889999999999999999999999999999999999876543 4666555542 Q ss_pred EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHH Q lcl|Aclame:pro 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDF 229 (409) Q Consensus 150 ~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (409) +..+.|+++||||++++ .+...|.||++.+...+..+.+ .+.++++++.++.+++++.++++++| T Consensus 127 ----~~~~~~~~~diiH~~~~--~~~~~g~s~l~~~~~~i~~~~~---------~~~~~gil~~~~~l~~~~~~~~~~~~ 191 (378) T protein:vir:94 127 ----DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTKLE---------QGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred ----CCeeEeeeeeeEEecCc--CCccchhHHHHHHHHHHHHHHh---------cccccceeeeCCcCCHHHHHHHHHHH Confidence 12346789999999964 4667899999988887654322 22355678889999999888888888 Q ss_pred HHHhc------CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYYE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 230 ~~~~~------~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) ++.++ ++|+++|+++|++|+++++++.++++ +.++++.++||++|||||.+|++ ++.|++...|+.+ T Consensus 192 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVP~~~l~~------~~se~~~~~f~~~ 264 (378) T protein:vir:94 192 LTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------TASQEQQIYFYNS 264 (378) T ss_pred HHHHHHhhcccccccceecCCCceEEEccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------ChHHHHHHHHHHH Confidence 76653 46789999999999999999999997 56789999999999999999943 3458999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccc------eEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG 377 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~------~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g 377 (409) +|.|++++||++||++||++.++..+. .++||++.+++.|.+++++.+.+++++|+||+||+|+++|+||+||| T Consensus 265 tL~P~~~~ie~~l~~~Ll~~~er~~g~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~gl~p~~gG 344 (378) T protein:vir:94 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) T ss_pred HHHHHHHHHHHHHHhhcCChhHhhhhhhcccccceeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999987765553 37899999999999999999999999999999999999999999999 Q ss_pred CEEeecccccchhcccccccccC----CCCCCCC Q lcl|Aclame:pro 378 DKPLISGDLYPIDTPLELRKSLK----GGDKNVN 407 (409) Q Consensus 378 d~~~~~~n~~~~~~~~~~~~~~~----gg~~n~~ 407 (409) |++++|+|++|++.+.+.+...+ ++|+|++ T Consensus 345 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 345 DVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred CeeeecccccccccchhhcCCcCCCCCCCCCCCC Confidence 99999999999988776554332 2222322 No 73 >protein:vir:1661 Length: 378 # NCBI annotation: unknown # Family: family:all:2379 # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044950;genbank:gi:9629657;genbank:GeneID:1261302 Probab=100.00 E-value=2.8e-74 Score=423.85 Aligned_cols=351 Identities=15% Similarity=0.179 Sum_probs=275.3 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc------ Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK------ 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~------ 74 (409) |++++=...+... ........... | .....+++.++|++||++||++||++||++++..+ T Consensus 1 Mg~f~~~~~~~~~----~~~~~~~~~~~---~-------~~~~~~~~~~~v~~~i~~Ia~~iA~l~~~~~~~~~~~~~~~ 66 (378) T protein:vir:16 1 MNLFGKVVSFSRG----KLNNDTQRVTA---W-------QNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) T ss_pred Cccchhhhhhhcc----cccCCcceeee---c-------ccchhhHHHHHHHHHHHHHHhhhhhCceeEEEEcccccccc Confidence 9985332222111 11111111111 1 11234568889999999999999999999987542 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC-CceeEEEeeCCcceEEEEcCCcceeEEEE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY-HQPSKLFLLNPDVVEMLIENQSRELYYSI 149 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~-G~~~~l~~l~p~~v~~~~~~~~~~~~~~~ 149 (409) ...|++.++|+.+||++||+++||+.++.++++.||||++++|+.. |++..++|. T Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gna~i~~~~d~~~g~~~~l~~~-------------------- 126 (378) T protein:vir:16 67 TLISMAGSDLDEVLNWSPKGERNSMDFWRKVIKKLLRAPYVDLYAVFDDNTGELLDLLFA-------------------- 126 (378) T ss_pred cccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCceEEEEEeecCCceEEEEEec-------------------- Confidence 2468899999999999999999999999999999999999988753 455444432 Q ss_pred EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHH Q lcl|Aclame:pro 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDF 229 (409) Q Consensus 150 ~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (409) +..+.|+++||||+|.+ .+...|.||++.+...+.... ..+.+.++++.++.+++++.++.+++| T Consensus 127 ----~~~~~~~~~diih~r~~--~~~~~~~s~l~~~~~~i~~~~---------~~~~~~g~l~~~~~l~~~~~~~~~~~~ 191 (378) T protein:vir:16 127 ----DDKKEYKPEELVRLTSP--FYINEDTSILDNALASIQTKL---------EQGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred ----CCeeEecccceEEecCc--cCccchhHHHHHHHHHHHHHH---------hcCccceeeEeCCcCCHHHHHHHHHHH Confidence 12346789999999963 456678999988877654322 233456678888899998888888888 Q ss_pred HHHhc------CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYYE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 230 ~~~~~------~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) ++.++ ++|+++|+++|++|+++++++.++++. .+++.+++||++|||||.+|++ ++.|++..+|+.+ T Consensus 192 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~~-~~~~~~~~Ia~~fgVPp~~l~g------~~~e~~~~~f~~~ 264 (378) T protein:vir:16 192 LTTIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNKD-EIDLIKSELLTGYFMNENILLG------TASQEQQIYFYNS 264 (378) T ss_pred HHHHHHhhcccccccceEcCCCceEEEccCChhhhhHH-HHHHHHHHHHHHhCCCHHHhcC------CchHHHHHHHHHH Confidence 77653 567899999999999999999999975 5689999999999999999943 4558999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccc------eEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG 377 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~------~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g 377 (409) ||.|++++||++||++||++.++..+. .++||++.+++.|.+++++.+.+++++|++|+||+|+++|+||+||| T Consensus 265 tl~P~~~~ie~~l~~kLl~~~e~~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~g~~p~~gg 344 (378) T protein:vir:16 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) T ss_pred HHHHHHHHHHHHHHhhcCChhhhhhhhhcccccceeeccchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999987665443 47899999999999999999999999999999999999999999999 Q ss_pred CEEeecccccchhccccccccc----CCCCCCCC Q lcl|Aclame:pro 378 DKPLISGDLYPIDTPLELRKSL----KGGDKNVN 407 (409) Q Consensus 378 d~~~~~~n~~~~~~~~~~~~~~----~gg~~n~~ 407 (409) |++++|+|++|++...+.+... +|+|+|++ T Consensus 345 D~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~ne 378 (378) T protein:vir:16 345 DVYIANLNAVAVKNLSDLQGSRKDVTSTDETNNQ 378 (378) T ss_pred CeEeeccccccccchhhhcCccCCCCCCCCCCCC Confidence 9999999999998776654332 23333333 No 74 >protein:vir:80644 Length: 551 # NCBI annotation: gp23 # Family: family:all:2446 # MgeID: mge:1883 # MgeName: A511 # Cross-refs: genbank:acc:YP_001468463;genbank:gi:157325038;genbank:GeneID:5601615 Probab=100.00 E-value=1.7e-73 Score=419.47 Aligned_cols=403 Identities=11% Similarity=0.058 Sum_probs=293.1 Q ss_pred Ccchhhhhh---hh-hh--------------------hhccccc-Cc------ccccccccccCC--CCcccc-----ch Q lcl|Aclame:pro 1 MAKENIVTR---IK-KK--------------------LIDNWID-QS------ASKLYDFSPWKN--KSFWGV-----IN 42 (409) Q Consensus 1 M~~~~~~~r---~~-~~--------------------~~~~~~~-~~------~~~~~~~~~~~~--~~~~~v-----~~ 42 (409) |++++-|.. -+ .. ...+... ++ ......+..... .+..+. .. T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~a~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 84 (551) T protein:vir:80 5 LGLFESIRLVGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVL 84 (551) T ss_pred hhhHHHhhhccCChhhcccccccccceeeecccccHHHHHHhhccCcceeecccccceecCcccccCccccChhHHHHHH Confidence 444332220 00 00 0000000 00 000111111111 111111 12 Q ss_pred hHHhhhHHHHHHHHHHHHhhccC-----------ceeEeeccccc---------cchhhhhhhccccCC-----CCHHHH Q lcl|Aclame:pro 43 NTLETNETIFSAITKLSNSMASL-----------PLKMYEDYKVV---------NTEVSDLLTVSPNNS-----LSSFDF 97 (409) Q Consensus 43 ~~~~~~~~v~~~i~~ia~~ia~l-----------p~~~~~~~~~~---------~~~~~~~L~~~pn~~-----~s~~~f 97 (409) +.|..+|+|++||+.||+.||++ +|.+..++... .+.+.. +..+||++ +|+.+| T Consensus 85 ~~~~~npiv~~~I~~ia~~IA~~~~~~~~~~~g~~~~i~~kd~~~~~~~~~~~~~~~i~~-~l~~pn~~~~p~~~s~~~f 163 (551) T protein:vir:80 85 KKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIES-FIEKTGVDNDINRDSFSSF 163 (551) T ss_pred HHhhcCHHHHHHHHHHHHHHhhhhhhhhhhcCCCCceEEecccCcccChhHHHHHHHHHH-HHHhcCCCCCCccchHHHH Confidence 46778899999999999999974 45543332111 011222 34478876 588999 Q ss_pred HHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce----eEEEEEcCCCeEEEEccceEEEecCcCc- Q lcl|Aclame:pro 98 INQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE----LYYSIHAATGNKLIVHNMDMLHFKHIVA- 172 (409) Q Consensus 98 ~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~vih~~~~~~- 172 (409) +++++.+++++||+|++++|+..|+|.+|+||+|.+|++..+.+|.. .+|++...++..+.|++++|||+++++. T Consensus 164 ~~~lv~dlll~Gnay~~i~rd~~G~~~~L~~l~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~eiiH~~~n~~~ 243 (551) T protein:vir:80 164 VKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRS 243 (551) T ss_pred HHHHHHHHHhcCCEEEEEEECCCCcEEEEEEeCCceeEEEECCccccccCceEEEEEeCCcEEEEEcccceEEecccCCC Confidence 99999999999999999999999999999999999999999888864 3455555556677899999999997543 Q ss_pred --ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEec--CCcCCHHHHHHHHHHHHHHhc---CCCceeec- Q lcl|Aclame:pro 173 --SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKY--GSNVSTEKRQQVLEDFKQYYE---ENGGILFQ- 242 (409) Q Consensus 173 --~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl- 242 (409) .++.+|+||+.++...+..+.++++++.++|.++ +++++.. +..++++++++++++|++.++ |+|+++++ T Consensus 244 ~~~~~~~G~spi~~a~~~i~~~~a~~~~~~~~f~Ng~~p~giL~~~~~~~lt~e~~~~lk~~~~~~~~G~~nag~~~vl~ 323 (551) T protein:vir:80 244 DIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS 323 (551) T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEcCCCCCCHHHHHHHHHHHHHHhcCccccCcccccc Confidence 3467899999999999999999999998887665 5666654 345899999999999999884 56787655 Q ss_pred CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc----------CccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 243 EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN----------TNFAKNEELNRFYLQHTLLPIVKQY 312 (409) Q Consensus 243 ~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~----------~~~~~~e~~~~~~~~~~l~P~~~~i 312 (409) ++|++|+++++++.|+||+|++++++++||++|||||.+||..+. .+++|.+++...|++.+|.|++++| T Consensus 324 ~~g~~~~~l~~~~~D~qfle~~~~~~~~Ia~aFgVPp~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~i 403 (551) T protein:vir:80 324 AEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFI 403 (551) T ss_pred CCCceEEEccCChhHHHHHHHHHHHHHHHHHHhcCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHH Confidence 689999999999999999999999999999999999999986543 3789999999999999999999999 Q ss_pred HHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCC-CCCCCEEeecccccchhc Q lcl|Aclame:pro 313 EEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPP-VEGGDKPLISGDLYPIDT 391 (409) Q Consensus 313 e~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p-~~~gd~~~~~~n~~~~~~ 391 (409) |++||++|++.++ ..+.|+++.++..+..++++.+ +++.+|+||+||+|+++|+|| +||||+++.|.|+.+++. T Consensus 404 e~~ln~~L~~~~~----~~~~f~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~ 478 (551) T protein:vir:80 404 EDFINKHIVAEFG----DKYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQ 478 (551) T ss_pred HHHHHhhhccccC----CceEEEeeccChhhHHHHHHHH-HHHhcCCcCHHHHHHHhCCCCCCCCCceeecccccccccc Confidence 9999999997642 3455666677778877877765 477789999999999999998 799999999999887644 Q ss_pred ccccccc--------------cCC--------CCCCCCCC Q lcl|Aclame:pro 392 PLELRKS--------------LKG--------GDKNVNES 409 (409) Q Consensus 392 ~~~~~~~--------------~~g--------g~~n~~~~ 409 (409) ....+.. ..+ .+.++.++ T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 518 (551) T protein:vir:80 479 LMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDT 518 (551) T ss_pred cccccCcchhhhhhccccccCcCCCCCCCCCCCCCCcccc Confidence 3211100 000 00011000 No 75 >protein:vir:4995 Length: 384 # NCBI annotation: putative portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049969;genbank:gi:9632941;genbank:GeneID:1262104 Probab=100.00 E-value=2.7e-74 Score=423.90 Aligned_cols=370 Identities=17% Similarity=0.203 Sum_probs=307.4 Q ss_pred CcchhhhhhhhhhhhcccccCccc-cccccccc-CCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSAS-KLYDFSPW-KNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNT 78 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~ 78 (409) |++++.+...... ........ ...+...+ ...++..++.+.++++++|++||++||++||++|++++++.. T Consensus 1 Mglf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~al~~~~V~~~i~~Ia~~ia~l~~~~~~~~~---- 73 (384) T protein:vir:49 1 MPIFNITNLATES---PPSNQDSFFDITDPEFLDALNGSEWVSAETALKNSDLFSIISQLSNDLATAKITTSRKQL---- 73 (384) T ss_pred CccccccccCccc---ccccchhhccccchhhcccccCCceechhhhhccHHHHHHHHHHHHHHhhCceeeecchh---- Confidence 9997653321111 11111111 11111111 123456788899999999999999999999999999987543 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcC---CCe Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAA---TGN 155 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~---~g~ 155 (409) ..|+.+||++||+++|++.++.+++++||+|+++.|+..|++.+|+|++|++|++..+.++...+|.+... .|. T Consensus 74 ---~~l~~~PN~~~t~~~f~~~l~~~lll~Gna~~~i~r~~~g~~~~L~~l~~~~v~v~~~~~~~~~~y~~~~~~~~~~~ 150 (384) T protein:vir:49 74 ---QGIVDNPSNNANRFNFYQSIFAQMLLGGEAFAYRWRNENGRDMKWEYLRPSQVSFNRLDNQNGLYYNITFDDPRIPP 150 (384) T ss_pred ---hhhhhccCCCCCHHHHHHHHHHHhhhcCCeEEEEEECCCCcEEEEEEEcCceeEEEEcCCCceEEEEEEecCccccc Confidence 35788999999999999999999999999999999999999999999999999999888888777777654 355 Q ss_pred EEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 156 KLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 156 ~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (409) .+.|+++||||++.+++.+..+|+||+.++...+.++.+++++..+.+.++ ++++++.++.+++++..+....+.... T Consensus 151 ~~~~~~~eVih~~~~~~~~~~~G~s~i~~~~~~i~~~~~~~~~~~~~~~ng~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 230 (384) T protein:vir:49 151 KQHVPQGDILHFRLLSVDGGLTSVSPLMALGRELNIQKASDKLTLNALKNALNANGILKIKGGGLLDFKTKQSRSRQAMK 230 (384) T ss_pred eeEecCccEEEecCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCChHHHHHHHHHHHhcc Confidence 688999999999998888889999999999999999999999988777654 677888888888777666555555555 Q ss_pred cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNRFYLQHTLLPIVKQ 311 (409) Q Consensus 234 ~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~~~~~~~~l~P~~~~ 311 (409) +++|+++|+++|++|+++++++.|+|++|.++++.++||++|||||++||+.. .+++++.+++...|+..++.|+++. T Consensus 231 ~n~~~~~vl~~g~~~~~l~~~~~d~q~~e~~~~~~~~Ia~~fgVp~~~lg~~~~~~~~~~~~~~~~~~~i~~~l~pi~~~ 310 (384) T protein:vir:49 231 QMQGGPLVLDDLEDFTPLEIKSNVAQLLSQADWTTGQFAKVYGIPESVVGGEGDKQSSLEMIYNIYFKAVSRFLRPFVSE 310 (384) T ss_pred cCCccceecCCCceEEEccCChhhHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHH Confidence 78899999999999999999999999999999999999999999999998753 3466788999999999999999999 Q ss_pred HHHHHHHhhc---ChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEe Q lcl|Aclame:pro 312 YEEEFNRKLL---TKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPL 381 (409) Q Consensus 312 ie~~ln~~ll---~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~ 381 (409) |+++|+++++ .+.....+.+++|+++.+.+.+..++.+++..+.+.|+++ ||+|+.+|++|+|||| ..| T Consensus 311 i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~e~~~~l~~~g~~~-ne~r~~~~~~p~~gGd~~~~~ 384 (384) T protein:vir:49 311 LSKKLSCEVDADILPAVDPTGSNYIGLINSMVKTGTLAQNQGLYVLQQAEILP-KDLPEGETDSTLKGGETNEQY 384 (384) T ss_pred HHHHhchhhhhhhhhhhhccchHHHHHHHHHhhcCcccHHHHHHHHhhCCCCC-hhHHHHcCCCCCCCCCCCCCC Confidence 9999999984 3334455678999999999999999999999999999986 9999999999999876 222 No 76 >protein:vir:1082 Length: 359 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076736;genbank:gi:13095846;genbank:GeneID:920394 Probab=100.00 E-value=1.1e-72 Score=415.03 Aligned_cols=348 Identities=12% Similarity=0.180 Sum_probs=281.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |++++.|.|......+.+. ..........++..|+.+.++++++|++||++||++||++|+. .+++ T Consensus 1 M~~~~~f~~r~~~~~~~~~------~~~~~~~~~~~~~~v~~~~al~~~av~~cv~~ia~~ia~~p~~--------~~~~ 66 (359) T protein:vir:10 1 MSILNPFERRSSITPNNYY------PFMVQNGSIVPNSLVDATEALKNSDLYAVTSLISSDIAGTRFI--------GNQV 66 (359) T ss_pred CcccchhhccccCCCCcch------hhhhccccccCCcccCHHHhhcchHHHHHHHHHHHhhhcCccc--------cchH Confidence 9998866653221111111 1111222334556788899999999999999999999999984 4678 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVH 160 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~ 160 (409) .++|+.+||++||+++||+.++.+++++||+|++++|+..|.+.+|+|++|+.|++..++++ ..+.+....++..+.++ T Consensus 67 ~~~L~~~PN~~~t~~~f~~~~~~~lll~Gnay~~i~r~~~g~~~~l~~l~~~~v~i~~~~~~-~~y~~~~~~~~~~~~~~ 145 (359) T protein:vir:10 67 FTSVLNNPSHLTNAFSFWQTAILNLLLNGNVFLAILKGDNSLMKELRLIPSNAITIDLTDDT-LTYEVNQFDDYPSAKYN 145 (359) T ss_pred HHHHhhcccccCCHHHHHHHHHHhccccCceEEEEEECCCCeEEEEEEeCCceEEEEEcCCe-EEEEEEecCCceEEEEc Confidence 88899999999999999999999999999999999999999999999999999999876543 33333344567788999 Q ss_pred cceEEEecCcC----cccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecC-CcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 161 NMDMLHFKHIV----ASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYG-SNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 161 ~~~vih~~~~~----~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 233 (409) ++||+|++.++ +.++.+|+||+.++..++....+++++....+.++ ++++++.+ +.+++++.++++++|++.+ T Consensus 146 ~~evih~~~~~~~~~~~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~~~gil~~~~~~l~~e~~~~~~~~~~~~~ 225 (359) T protein:vir:10 146 ASEMIHVKIMAYGVDTLHNLVGHSPLESLTSEIGQQKEANRLSLSTLKGALNPTSVVKVPQGTLSSEAKDSIRKEFEKAN 225 (359) T ss_pred ccceEEeccCCCCCCccCccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 99999999764 34778999999999999999999999998877665 56777775 5799999999999999888 Q ss_pred c--CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 234 E--ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNRFYLQHTLLPIV 309 (409) Q Consensus 234 ~--~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~~~~~~~~l~P~~ 309 (409) + |+|+++|+++|++|+++++++.|+|++|.+++++++||++|||||++||+.+ .+++++.+++...|+..+|.|++ T Consensus 226 ~~~n~g~~~vl~~g~~~~~l~~~~~d~q~le~~~~~~~~Ia~~fgVPp~~lg~~~~~~~~~~~~e~~~~~~l~~~l~p~~ 305 (359) T protein:vir:10 226 GGNNSGRVMVLDQSADFSTVSINADVANYLNSMNWGRTQIAKAFGVSDSYLNGTGDQQSSLDQIKDLYVNALNRFIEPLI 305 (359) T ss_pred CccccCCceecCCCcceeeecCCHHHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCcccccHHHHHHHHHHHHHHHHHHHH Confidence 4 5789999999999999999999999999999999999999999999998653 34666777777788788888877 Q ss_pred HHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 310 KQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE 375 (409) Q Consensus 310 ~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~ 375 (409) +.|+..|++++.. ..+..+++| .......+.+++++|++|+||+|+++|++|+= T Consensus 306 ~~l~~~l~~~~~~----~~~~~~~~d--------~~~~~~~~~~~~~~G~~t~NE~R~~l~~~pv~ 359 (359) T protein:vir:10 306 SELRIKCDSSIGV----DMSPITDYS--------NSVFKADILNWVKEGIIEPTEAKTLLESKGII 359 (359) T ss_pred HHHHHHhhhhhcc----cchhhhhcC--------HHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCC Confidence 7777777665432 223334443 33444556779999999999999999999983 No 77 >protein:vir:858 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047117;genbank:gi:9630570;genbank:GeneID:1261758 Probab=100.00 E-value=1e-72 Score=415.26 Aligned_cols=352 Identities=14% Similarity=0.142 Sum_probs=267.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc------ Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK------ 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~------ 74 (409) |++++-+..+... .....+ +..+..+....++.+++|++||++||++||+||+++++++. T Consensus 1 M~~f~k~~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~v~~ia~~iA~lp~~~~~~~~~~~~~~ 66 (378) T protein:vir:85 1 MNLFGKVVSFSRG---KLNNDT-----------QRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) T ss_pred Cchhhhhhhhhhc---ccccCC-----------cceeeeeccchhhhhHHHHHHHHHHHHhHhhCceeEEEEeccccccc Confidence 9996642211111 100000 01111223345678899999999999999999999987542 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee-ecCCCceeEEEeeCCcceEEEEcCCcceeEEEE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLNPDVVEMLIENQSRELYYSI 149 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~-~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~ 149 (409) ..+|++.++|+.+||++||+++||+.++.++++.||||++++ ++..|.+...+ T Consensus 67 ~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~---------------------- 124 (378) T protein:vir:85 67 TLISMAGSDLDEVLNWSYKGEHNSMEFWQKVIKKLLCTRYVDLYPIFDSETGELLDLL---------------------- 124 (378) T ss_pred cccccccchHHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEeecCCCceEEEEE---------------------- Confidence 246889999999999999999999999999999999998854 34444433322 Q ss_pred EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHH Q lcl|Aclame:pro 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDF 229 (409) Q Consensus 150 ~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (409) ...+ .+.+.++||||++.+...+ .+.+++..+...+.. ......++++++.++.+++++.++++++| T Consensus 125 ~~~~--~~~~~~~dvih~~~~~~~~--~~~~~~~~a~~~~~~---------~~~~~~~~g~l~~~~~l~~~~~~~~~~~~ 191 (378) T protein:vir:85 125 FAND--KKEYKPEELVRLVSPFYIN--EDTSILDNALASIQT---------KLEQGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred ecCC--CEEEcccceEEEecCcCcc--chhhHHHHHHHHHHH---------HHhcCCcceEEEeCCcCCHHHHHHHHHHH Confidence 2222 2457889999998643322 234444444333221 11223456678888999999988888888 Q ss_pred HHHhc------CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYYE------ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 230 ~~~~~------~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) ++.++ ++++++|+++|++|+++++++.++++ +.+++..++||++|||||.+|++ ++.|++..+|+.+ T Consensus 192 ~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgVPp~~l~~------s~~e~~~~~f~~~ 264 (378) T protein:vir:85 192 LATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIELIKSELLTGYFMNENILLG------TATQEQQIYFYNS 264 (378) T ss_pred HHHHHHhhcccccccceecCCCceEEeccCChhhhhH-HHHHHHHHHHHHHhCCCHHHhcC------CchHHHHHHHHHH Confidence 77552 56789999999999999999999996 67899999999999999999943 4568999999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccc------eEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG 377 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~------~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g 377 (409) +|.|++++||++||++||++.++..+. .+.||.+.+++.|.+++++.+.+++++|+||+||+|+++|+||+||| T Consensus 265 tL~P~~~~ie~~l~~kLl~~~er~~~~~~~~~~~~~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~lgl~p~~gG 344 (378) T protein:vir:85 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) T ss_pred HHHHHHHHHHHHHHhhcCChhhhhhhhhccccceeeecchhhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999987765554 37899999999999999999999999999999999999999999999 Q ss_pred CEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 378 DKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 378 d~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |++++|+|++|++...+.+...+++ ++++++ T Consensus 345 D~~~~~~N~~~~~~~~~~~~~~~~~-~~~~e~ 375 (378) T protein:vir:85 345 DIYIANLNAVAVKNLSDLQGSRKDV-ASTDET 375 (378) T ss_pred CeEeecccccccccchhhcCccCCC-CCCCCC Confidence 9999999999998877665433322 212222 No 78 >protein:vir:100691 Length: 535 # NCBI annotation: hypothetical protein # Family: family:all:2446 # MgeID: mge:1633 # MgeName: LP65 # Cross-refs: genbank:acc:YP_164747;genbank:gi:56693160;genbank:GeneID:3197324 Probab=100.00 E-value=1.1e-71 Score=409.50 Aligned_cols=404 Identities=11% Similarity=0.079 Sum_probs=291.4 Q ss_pred Ccchhhhhhhhhhhhc---------ccccCccc-ccccccccC----CCCccccchhHHhhhHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLID---------NWIDQSAS-KLYDFSPWK----NKSFWGVINNTLETNETIFSAITKLSNSMASLP 66 (409) Q Consensus 1 M~~~~~~~r~~~~~~~---------~~~~~~~~-~~~~~~~~~----~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp 66 (409) |+....-.+....... ++...+.. ....+..+. ..+......+.+....++++|+.++++.++++| T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~t~~~~va~~~~i~~~s~~~~~~~ 113 (535) T protein:vir:10 34 KAIRPGRASARDTVDGIDIADGNVAGQYSVASISDVLSTKKLLKAYADNDIVQAIIRTRTNQVLTYSNPSRYNRNGVGFK 113 (535) T ss_pred hhhhhhhhhhhccccccccccCCcccccccCccccccCHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhcccCcce Confidence 4443333332111100 00000000 000110000 001111122456677888999999999999999 Q ss_pred eeEeeccc-------cccchhhhhhhccccCCCCHHH----HHHHHHHHHHhc-CCeEEEeeecCCCceeEEEeeCCcce Q lcl|Aclame:pro 67 LKMYEDYK-------VVNTEVSDLLTVSPNNSLSSFD----FINQIETIRNEK-GNAYVLIERDIYHQPSKLFLLNPDVV 134 (409) Q Consensus 67 ~~~~~~~~-------~~~~~~~~~L~~~pn~~~s~~~----f~~~~~~~~l~~-G~a~~~~~~~~~G~~~~l~~l~p~~v 134 (409) +++++.+. ...|++.++|+.+||+++++++ |+++++.+++++ |++|+++.|+..|+|.+||||+|.+| T Consensus 114 i~l~~~~~~~~~~~~~~~~~l~~lL~~~PN~~~~~~~~~~~~~~~lv~d~l~~~g~ay~~i~r~~~G~~~~L~~l~p~~V 193 (535) T protein:vir:10 114 VELKDATKVMSKAQIKRAHEIEDFIYNTGSEYYEWRDTFPRLLTKIINDMYVQDQINIERIFKNDSNELDHFNAVDASKV 193 (535) T ss_pred eEEEeccCCCcchhhhhhhHHHHHHHhCCCCCCChhHHHHHHHHHHHHHHHhhCCceEEEEEECCCCcEEEEEEeCCcee Confidence 99987542 2346778899999999998875 566677776555 57899999999999999999999999 Q ss_pred EEEEcCCcce--eEEEEEcCCCeEEEEccceEEEecCcCcc---cccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--c Q lcl|Aclame:pro 135 EMLIENQSRE--LYYSIHAATGNKLIVHNMDMLHFKHIVAS---NMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--D 207 (409) Q Consensus 135 ~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~vih~~~~~~~---~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~ 207 (409) ++..+.++.. ..|++....+....|++++|||++++++. ++.+|+||+.++...|.++.++++++.++|.++ + T Consensus 194 ~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~eiih~~~~~~~~~~~~~~G~Spi~~~~~~i~~~~aa~~~~~~~f~ng~~p 273 (535) T protein:vir:10 194 VISYSPRSKDQPRKFEQFVSETKSVKFSERNLTFINYWNLSDTDRRGYGYSPVEASIPLIRAIYDTEQFNARFFSQGGTT 273 (535) T ss_pred EEEEcCccccCceEEEEEecCceeEEECcccEEEEeccCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhccCCc Confidence 9998866542 23333344566788999999999986543 356799999999999999999999998887664 5 Q ss_pred eeEEecCC----cCCHHHHHHHHHHHHHHhc---CCCceeecC-CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCCh Q lcl|Aclame:pro 208 SFMLKYGS----NVSTEKRQQVLEDFKQYYE---ENGGILFQE-PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPS 279 (409) Q Consensus 208 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~ 279 (409) +++++.++ .++++++++++++|++.++ |+|+++|+. +|++|+++++++.|+||+|.++++.++||++||||| T Consensus 274 ~giL~~~~~~~~~ls~e~~e~lk~~~~~~~~G~~nag~~~vl~~~g~~~~~l~~~~~D~qfle~~~~~~~eIa~afgVPp 353 (535) T protein:vir:10 274 RGILVIDQDGDAQANQMMLAGIRRQWTSQGSGLGGAWKIPILAAKDAKFVNMTQNSRDMEFDKFLNFMIYDTAAIFQMQP 353 (535) T ss_pred cEEEEecCCCCcccCHHHHHHHHHHHHHHhcCcccccccccccCCCceEEecCCChhHHHHHHHHHHHHHHHHHHhCCCH Confidence 66776643 4899999999999999885 467776664 799999999999999999999999999999999999 Q ss_pred hhcCCcccCcccc------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHH Q lcl|Aclame:pro 280 IFLNARSNTNFAK------------NEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQ 347 (409) Q Consensus 280 ~~l~~~~~~~~~~------------~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~ 347 (409) .+||..++++|+| .|++...|++.+|.|+++.||++||++|++.. +..++|+++.+++.|.+++ T Consensus 354 ~~lG~~~~at~sn~~~~~~~~~~s~~E~~~~~~~~~~L~P~l~~ie~~ln~~Ll~~~----~~~~~f~f~~l~~~d~~~r 429 (535) T protein:vir:10 354 EEINFPNNGGSTGKSGTKSVNEGSTAKAKLESSKDKGLTPLLSFIEQVINDKIMRYV----DTDYRFSFTLGDAQDKLQE 429 (535) T ss_pred HHhccccCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc----CCeEEEEeccccccCHHHH Confidence 9999988877654 56777889999999999999999999999754 3356778889999999999 Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecc---cccchh---ccccccc-ccC-------------------- Q lcl|Aclame:pro 348 AEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG---DLYPID---TPLELRK-SLK-------------------- 400 (409) Q Consensus 348 ~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~---n~~~~~---~~~~~~~-~~~-------------------- 400 (409) ++.++.+. +|+||+||+|+++|+||+||||++++.. ++.... .+..... ... T Consensus 430 ~~~~~~~~-~g~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~~~~~~~~~ 508 (535) T protein:vir:10 430 EQVWKLKL-ANGYFINEYRKDHGLKTVDGLDVPGFIGSAENFINATGFGQPNVPDSSDDSGSTLGERERQERIQHSKDYE 508 (535) T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCCCCCccccccccchhhcccccccccccCCCCCCCccccCCccccCcccccccccc Confidence 98887555 6779999999999999999999876533 221111 0000000 000 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 401 GGDKNVNES 409 (409) Q Consensus 401 gg~~n~~~~ 409 (409) +|.++++.. T Consensus 509 ~g~~~~~~~ 517 (535) T protein:vir:10 509 KGKDDPKSP 517 (535) T ss_pred cCCCCCCCC Confidence 011110000 No 79 >protein:vir:94869 Length: 378 # NCBI annotation: putative portal protein # Family: family:all:2379 # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762515;genbank:gi:115304214;genbank:GeneID:5141182 Probab=100.00 E-value=2.5e-72 Score=413.14 Aligned_cols=351 Identities=14% Similarity=0.143 Sum_probs=267.8 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc------ Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK------ 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~------ 74 (409) |++++-+.+++.. ... ... ..++..+....+++.++|++||++||++||++|++++++.. T Consensus 1 M~if~~~~~~~~~---~~~---~~~--------~~~~~~~~~~~~~~~~~v~~~v~~Ia~~iA~lp~~~~~~~~~~~~~~ 66 (378) T protein:vir:94 1 MNLFGKVVSFSRG---KLN---NDT--------QRVTAWQNEAVEYTSAFVTNIHNKIANEITKVEFNHVKYKKSDVGSD 66 (378) T ss_pred CchhHHhHhhhhc---ccc---cCc--------ceeeeeecchhhhhhHHHHHHHHHHHHhHhhCceeeeeecccccccc Confidence 9886533322111 100 000 11112223345677889999999999999999999987532 Q ss_pred ----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee-ecCCCceeEEEeeCCcceEEEEcCCcceeEEEE Q lcl|Aclame:pro 75 ----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQPSKLFLLNPDVVEMLIENQSRELYYSI 149 (409) Q Consensus 75 ----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~-~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~ 149 (409) ...+++.++|+.+||++||+++||+.++.++++.|+||++++ ++..|.+..+++. T Consensus 67 ~~~~~~~~~l~~lLn~~PN~~~t~~~f~~~~~~~lll~Gnayi~~i~~~~~g~~~~~~~~-------------------- 126 (378) T protein:vir:94 67 TLISMAGSDLDEVLNWSSKGERNSMEFWQKVIKKLLTTRYIDLYPIFDSETGELLDLLFA-------------------- 126 (378) T ss_pred cccccccchHHHHHhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCCcEEEEEEe-------------------- Confidence 246889999999999999999999999999999999999854 4445555443321 Q ss_pred EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHH Q lcl|Aclame:pro 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDF 229 (409) Q Consensus 150 ~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (409) .+ ...+++++|+|++.+...+ .+.+++..+...+..+. ....+.++++.++.+++++.++.+++| T Consensus 127 --~~--~~~~~~~dvih~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~g~l~~~~~l~~~~~~~~~e~~ 191 (378) T protein:vir:94 127 --ND--KKEYKPEELVRLTSPFYIN--EDTSILDNALASIQTKL---------EQGKLRGLLKINAFLDIDNTQEYREKA 191 (378) T ss_pred --cC--cEEechhceeeecCcCCcc--cchhHHHHHHHHHHHHH---------hhCCcccceeeCCcCCHHHHHHHHHHH Confidence 11 2467899999999654333 35566666554433221 122345678888889988777777777 Q ss_pred HHHh------cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYY------EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH 303 (409) Q Consensus 230 ~~~~------~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~ 303 (409) ++.+ .++++++|+++|++|+++++++.++++ +.+++..++||++|||||.+|++ +..|++..+|+.+ T Consensus 192 ~~~~~~~~~~~n~~~~~vl~~g~~~~~l~~~~~~~~~-~~~~~~~~~Ia~~fgvPp~~l~g------~~~e~~~~~f~~~ 264 (378) T protein:vir:94 192 LATIKNMQEGSSYNGLTPVDNKTEIVELKKDYSVLNK-DEIDLIKSELLTGYFMNENILLG------TATQEQQIYFYNS 264 (378) T ss_pred HHHHHHhhcccccccceeccCCceEEEccCChHHhhH-HHHHHHHHHHHHHhCCCHHHhcC------CchHHHHHHHHHH Confidence 6654 246789999999999999999999996 66789999999999999999953 3347889999999 Q ss_pred HHHHHHHHHHHHHHHhhcChhhccccc------eEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC Q lcl|Aclame:pro 304 TLLPIVKQYEEEFNRKLLTKTDREKNR------YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG 377 (409) Q Consensus 304 ~l~P~~~~ie~~ln~~ll~~~~~~~~~------~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g 377 (409) ||.|++++||++||++||++.++..++ .+.|+++.+++.|.+++++++.+++++|++|+||+|+++|+||+||| T Consensus 265 tl~P~~~~ie~~l~~~Ll~~~e~~~g~~~~~~~~~~f~~~~l~~~d~~~~~e~~~~~~~~G~~t~NE~R~~~g~~p~~gg 344 (378) T protein:vir:94 265 TIIPLLIQLEKELTYKLISTNRRRVVKGNLYYERIIVDNQLFKFATLKELIDLYHENINGPIFTQNQLLVKMGEQPIEGG 344 (378) T ss_pred HHHHHHHHHHHHHHhhcCChhHhhhhhhhcccceeEeecchhhhcCHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCCCCC Confidence 999999999999999999987665443 47799999999999999999999999999999999999999999999 Q ss_pred CEEeecccccchhcccccccccC----CCCCCCC Q lcl|Aclame:pro 378 DKPLISGDLYPIDTPLELRKSLK----GGDKNVN 407 (409) Q Consensus 378 d~~~~~~n~~~~~~~~~~~~~~~----gg~~n~~ 407 (409) |++++|+|++|++...+.+...+ |+|+|++ T Consensus 345 d~~~~~~n~~~~~~~~~~~~~~~~~~~~~e~~n~ 378 (378) T protein:vir:94 345 DVYIANLNAVAVKNLSDLQGNRKDVTSTDETNNQ 378 (378) T ss_pred CeeeecccccchhcchhcccccCCCCCCCCCCCC Confidence 99999999999988776654332 2333333 No 80 >protein:vir:63755 Length: 547 # NCBI annotation: gp14 # Family: family:all:2446 # MgeID: mge:1517 # MgeName: P100 # Cross-refs: genbank:gi:82547619;genbank:GeneID:3783506 Probab=100.00 E-value=3.1e-71 Score=407.11 Aligned_cols=403 Identities=11% Similarity=0.081 Sum_probs=290.8 Q ss_pred Ccchhhhhhhhh-------------------------hhhcccccCccc------ccccccccC--CCCccc---c--ch Q lcl|Aclame:pro 1 MAKENIVTRIKK-------------------------KLIDNWIDQSAS------KLYDFSPWK--NKSFWG---V--IN 42 (409) Q Consensus 1 M~~~~~~~r~~~-------------------------~~~~~~~~~~~~------~~~~~~~~~--~~~~~~---v--~~ 42 (409) |+++.-++..+. .+.+..-+++.. ....+.... ..+..+ . .. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~ 80 (547) T protein:vir:63 1 MGLFESIRLAGVNKSDAVKHIEVDDNYSIAIQQREQEQISKAMNNKEVAYSQPVIGSMSANPGFKTKPSIRNNQDLHGVL 80 (547) T ss_pred CchhhhhhhhcCCccccccccccccccchhhhhhhHHHHHHhhcccchhhhchhhheeecccccccCCccCChhHHHHHH Confidence 666433322110 000000000000 000111111 111111 1 23 Q ss_pred hHHhhhHHHHHHHHHHHHhhccC-------------ceeEeecccc-------ccchhhhhhhccccCC-----CCHHHH Q lcl|Aclame:pro 43 NTLETNETIFSAITKLSNSMASL-------------PLKMYEDYKV-------VNTEVSDLLTVSPNNS-----LSSFDF 97 (409) Q Consensus 43 ~~~~~~~~v~~~i~~ia~~ia~l-------------p~~~~~~~~~-------~~~~~~~~L~~~pn~~-----~s~~~f 97 (409) +.|..+|+|++||+.||+.||.+ .+++...... ..+.+..+|. +||++ +|+.+| T Consensus 81 ~~~~~npiv~~~I~~~a~~ia~~~~~~~~~~~~~~~~ir~k~~~~~~~~~~~~~~~~l~~~l~-~pn~~~~p~~~s~~~f 159 (547) T protein:vir:63 81 KKFGGNIILNAIINTRSNQVSMYCKPARHSEKGVGFEVRLKDLDKKPTSHDEATIKRIESFIE-KTGVDNDINRDSFSSF 159 (547) T ss_pred HHhhcCHHHHHHHHHHHHHHhhhhhhhhhhccCCCceeEecccccccChhhHHHHHHHHHHHH-hhCCCCCCccchHHHH Confidence 46788999999999999999964 2333221111 1122333343 67765 589999 Q ss_pred HHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce----eEEEEEcCCCeEEEEccceEEEecCcCcc Q lcl|Aclame:pro 98 INQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE----LYYSIHAATGNKLIVHNMDMLHFKHIVAS 173 (409) Q Consensus 98 ~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~vih~~~~~~~ 173 (409) +++++.+++++||+|++++|+..|++.+|+||+|.+|++..+.++.. .+|++...++..+.|+++||||+++++.. T Consensus 160 ~~~lv~d~ll~Gn~~~~i~rd~~G~~~~L~~l~p~~V~~~~~~~g~~~~~~~~y~~~~~~~~~~~~~~~eiih~r~n~~~ 239 (547) T protein:vir:63 160 VKKIVRDTYMYDQVNFEKVFNRNQSMVRFVAKDPTTIFFATTADGKIPDNGNRFVQVIDQKIVATFNAREMAFAVRNPRS 239 (547) T ss_pred HHHHHHHHHhhCCEEEEEEECCCCcEEEEEEecCceeEEEECCccccccCceEEEEEcCCcEEEEeccccEEEecccCCC Confidence 99999999999999999999999999999999999999998888754 34555555666778999999999976543 Q ss_pred ---cccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEec--CCcCCHHHHHHHHHHHHHHhc---CCCceeec- Q lcl|Aclame:pro 174 ---NMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKY--GSNVSTEKRQQVLEDFKQYYE---ENGGILFQ- 242 (409) Q Consensus 174 ---~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~vl- 242 (409) .+.+|+||+.++...+..+.++++++.++|.++ +++++.. +..++++++++++++|++.++ |+|+++|+ T Consensus 240 ~~~~~~~G~Spi~~~~~~i~~~~~a~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lk~~~~~~~~G~~nagk~~vl~ 319 (547) T protein:vir:63 240 DIYATGYGYPELEIALKQFIAHENTEAFNDRFFSHGGTTRGILQIKAAQQQSQHALEIFKREWKNSLSGINGSWQIPVVS 319 (547) T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhcCccccccccccc Confidence 356799999999999999999999998888765 5666654 345899999999999999884 56777655 Q ss_pred CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc----------CccccHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 243 EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN----------TNFAKNEELNRFYLQHTLLPIVKQY 312 (409) Q Consensus 243 ~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~----------~~~~~~e~~~~~~~~~~l~P~~~~i 312 (409) ++|++|+++++++.|+||+|++++++++||++|||||.+||..+. .+++|.|++.+.|++.||.|+++.| T Consensus 320 ~~g~~~~~l~~~~~d~qfle~~~~~~~~Ia~afgVPP~~lG~~~~~~~~~~~~~s~t~sn~e~~~~~~~~~tL~P~~~~i 399 (547) T protein:vir:63 320 AEDVKFVNMTPSARDMEFEKWLNYLINVISALYGIDPAEINIPNNGGATGSKGGSLNEGNSAEKNQASKNKGLQPLLGFI 399 (547) T ss_pred CCCceEEEcCCChhHHHHHHHHHHHHHHHHHHhCCCHHHcCcccccccccccccccchhhHHHHHHHHHHHHHHHHHHHH Confidence 688999999999999999999999999999999999999986543 3789999999999999999999999 Q ss_pred HHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCC-CCCCCEEeecccccchhc Q lcl|Aclame:pro 313 EEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPP-VEGGDKPLISGDLYPIDT 391 (409) Q Consensus 313 e~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p-~~~gd~~~~~~n~~~~~~ 391 (409) |++||++|++.+. . .+.|+++.+...+..++++.+ +++.+|+||+||+|+++|+|| +||||+++.+.++.+++. T Consensus 400 e~~ln~~L~~~~~--~--~~~~~f~~~~~~~~~~~~~~~-~~~~~g~lT~NE~R~~~gl~P~~egGD~~~~~~~~~~~~~ 474 (547) T protein:vir:63 400 EDFINKHIVAEFG--D--KYTFQFVGGDIKSELESVKIL-AEKAKVAMTVNEVRKELNLPGDVIGGDIPLNGVIVQRIGQ 474 (547) T ss_pred HHHHHhhcccccC--C--ceEEEeeccccccHHHHHHHH-HHHhCCCcCHHHHHHHhCCCCCCCCCceeecccccccccc Confidence 9999999997542 2 345556677777777777654 577889999999999999998 799999999998877653 Q ss_pred cccccc--------------ccCCCCC--------CCCCC Q lcl|Aclame:pro 392 PLELRK--------------SLKGGDK--------NVNES 409 (409) Q Consensus 392 ~~~~~~--------------~~~gg~~--------n~~~~ 409 (409) ....+. +..+++. +++++ T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (547) T protein:vir:63 475 LMQQEQFEHEKQQSNLQMLQEQTGNRVSTDVEDIPDGKDT 514 (547) T ss_pred cccccCCccccchhhccccccccCCCCCCCCCCCCCCccc Confidence 221100 0001010 00000 No 81 >protein:vir:96579 Length: 576 # NCBI annotation: ORF012 # Family: family:all:2446 # MgeID: mge:1623 # MgeName: Twort # Cross-refs: genbank:acc:YP_238542;genbank:gi:66391267;genbank:GeneID:5130361 Probab=100.00 E-value=3.1e-71 Score=407.15 Aligned_cols=402 Identities=12% Similarity=0.101 Sum_probs=284.3 Q ss_pred Ccc--hhhhhhhhhh--hhcccccCcccccccc---------cccCCCCccc------cchhHHhhhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MAK--ENIVTRIKKK--LIDNWIDQSASKLYDF---------SPWKNKSFWG------VINNTLETNETIFSAITKLSNS 61 (409) Q Consensus 1 M~~--~~~~~r~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~~------v~~~~~~~~~~v~~~i~~ia~~ 61 (409) |.- ...|.++..+ ..++...........+ +...+.++.. -..+.+..+++|++||++||+. T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~npiv~~~I~~ia~~ 106 (576) T protein:vir:96 27 IDDGLQANIRNIEEKSKELNKSLYGKQQAYAEPFLEVMDTNPEFRTKRSYMKNSDNLHDVLKQFGNNPILNAIILTRSNQ 106 (576) T ss_pred cccChhHHHHHhhhhhhhhccccCCccchhhcceeeeeecCCCccccCcchhhhhhhHHHHHHhhcCHHHHHHHHHHHHH Confidence 211 1223333221 1111111110000000 0011111110 0124566789999999999999 Q ss_pred hccC-------------ceeEeecccc-cc------chhhhh---hhccccCC-CCHHHHHHHHHHHHHhcCCeEEEeee Q lcl|Aclame:pro 62 MASL-------------PLKMYEDYKV-VN------TEVSDL---LTVSPNNS-LSSFDFINQIETIRNEKGNAYVLIER 117 (409) Q Consensus 62 ia~l-------------p~~~~~~~~~-~~------~~~~~~---L~~~pn~~-~s~~~f~~~~~~~~l~~G~a~~~~~~ 117 (409) ||++ +++++..+.. .. +.+... ++..||++ +|+.+||+.++.+++++||+|+++++ T Consensus 107 vA~~~~~~~~~~~~~~~~i~lk~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~dlll~Gna~~~i~~ 186 (576) T protein:vir:96 107 VAMYCQPSRYNERGLGFEVRMRDLDAEPGKKEKEEIKRIENFILNTGRDKDIDRDSFQSFCRKIVRDTYTYDQVNFEKVF 186 (576) T ss_pred HHhhhhhhhhccccccceeEEecCcCccchhhhHhhhhHHhhHhhccCCCCCccccHHHHHHHHHHHHHhcCCeEEEEEE Confidence 9873 3344333211 11 111211 22345554 69999999999999999999999885 Q ss_pred --cCCCceeEEEeeCCcceEEEEcCCcceeE----EEEEcCCCeEEEEccceEEEecCcCccc---ccccccHHHHHHHH Q lcl|Aclame:pro 118 --DIYHQPSKLFLLNPDVVEMLIENQSRELY----YSIHAATGNKLIVHNMDMLHFKHIVASN---MVQGISPIDVLKNT 188 (409) Q Consensus 118 --~~~G~~~~l~~l~p~~v~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~vih~~~~~~~~---~~~G~sp~~~~~~~ 188 (409) +..|++.+|+||+|.+|++..+.+|...+ |.+....+....+++++|||++.....+ +.+|+||+.++... T Consensus 187 ~rd~~g~~~~L~pl~p~~V~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~d~~~~~~G~Spi~~a~~~ 266 (576) T protein:vir:96 187 NKKNATTMDKFIAVDPSTIFYATDKNGKIIKGGKRFVQVINKKVVASFTSREMAMGIRNPRTELSSSGYGLSEVEIAMKQ 266 (576) T ss_pred ecCCCCceEEEEEeCCceeEEEECCCCceeeeeeEEEEecCCceEEEecccceEEEeecCCCCcccCcccccHHHHHHHH Confidence 45678999999999999999999887643 3334445566789999999876544333 67899999999999 Q ss_pred HHHHHHHHHHHHHhcCCC--ceeEEecC--CcCCHHHHHHHHHHHHHHhc---CCCc-eeecCCCceeeeccCChhhHHH Q lcl|Aclame:pro 189 TDFDNAVRTFNLTEMQKP--DSFMLKYG--SNVSTEKRQQVLEDFKQYYE---ENGG-ILFQEPGVEIEPLPKKYVSEDI 260 (409) Q Consensus 189 i~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~-~~vl~~g~~~~~l~~~~~d~~~ 260 (409) |.++.++++++.++|.++ ++++++.+ ..+++++++++++.|++.++ |+|+ ++|+++|++|+++++++.|+|| T Consensus 267 i~~~~~~~~~~~~~f~Ng~~p~giL~~~~~~~ls~e~~~~lr~~~~~~~~G~~nag~~p~vl~~G~~~~~ls~~~~d~qf 346 (576) T protein:vir:96 267 FIAYNNTETFNDRFFSHGGTTRGILQIKSEQQQSQRALENFKREWKSSFSGINGSWQVPVVMADDIKFVNMTPTANDMQF 346 (576) T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceeecCCCceEEeccCChhhHHH Confidence 999999999998887664 56666654 46899999999999999885 4567 5889999999999999999999 Q ss_pred HHHHHHHHHHHHHHhcCChhhcCCcccC-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcccc Q lcl|Aclame:pro 261 VASENLTRERVANVFQLPSIFLNARSNT-----------NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKN 329 (409) Q Consensus 261 ~e~~~~~~~~Ia~~fgvp~~~l~~~~~~-----------~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~ 329 (409) +|.+++++++||++|||||.+||..+.+ ++++.|++.+.|+++||.|+++.||++||++|++..+ T Consensus 347 le~~~~~~~~Ia~afgVPp~~lG~~~~~~~~g~~~~~s~t~sn~e~~~~~f~~~tL~P~~~~ie~~ln~~Ll~~~~---- 422 (576) T protein:vir:96 347 EKWLTYLINIISALYGIDPAEIGFPNRGGATGGKGGNTLNEADPGKKQQQSQNKGLQPLLRFIEDLINTHIISEYS---- 422 (576) T ss_pred HHHHHHhHHHHHHHhCCCHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc---- Confidence 9999999999999999999999876543 7899999999999999999999999999999997642 Q ss_pred ceEEecchhhhhhhHHHHHHHHHH--HHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccc--------- Q lcl|Aclame:pro 330 RYFKFNVKSYLRADSATQAEVYFK--AVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKS--------- 398 (409) Q Consensus 330 ~~~~~d~~~l~~~d~~~~~~~~~~--~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~--------- 398 (409) ..+.|++ ++.|.+++++.++. ++.+|+||+||+|+++|+||+||||+++.|.|+.+++.+...... T Consensus 423 ~~~~~~f---~r~d~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~piegGD~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 499 (576) T protein:vir:96 423 DKYVFQF---VGGDTKSELDKIKILQEEVKTYKTVNEARKEKGLKPIEGGDVLLDGSFIQSMSLNTQKEQYEDTKQKERF 499 (576) T ss_pred CceEEEe---ccCCHHHHHHHHHHHHHHhcCccCHHHHHHHhCCCCCCCcceeccccccccccccccCCCCCCccccccc Confidence 2233433 45566777776654 466799999999999999999999999999998877643221100 Q ss_pred ------cCCCCCC--CCCC Q lcl|Aclame:pro 399 ------LKGGDKN--VNES 409 (409) Q Consensus 399 ------~~gg~~n--~~~~ 409 (409) .++++.. ..++ T Consensus 500 ~~~~~~~~~~~~~~~~~~s 518 (576) T protein:vir:96 500 DMIQQFLNSPDDEEPQQES 518 (576) T ss_pred cccccccCCCCCCCCCCCC Confidence 0111110 0000 No 82 >protein:vir:3153 Length: 467 # NCBI annotation: capsid protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:316 # MgeName: PhiCh1 # Cross-refs: genbank:acc:NP_665924;genbank:gi:22091110;genbank:GeneID:951257 Probab=100.00 E-value=1.6e-70 Score=403.23 Aligned_cols=365 Identities=13% Similarity=0.142 Sum_probs=287.4 Q ss_pred chhHHhhhHHHHHHHHHHHHhhccCceeEeeccccc---------cchhhhhhhccccCCC--------CHHHHHHHHHH Q lcl|Aclame:pro 41 INNTLETNETIFSAITKLSNSMASLPLKMYEDYKVV---------NTEVSDLLTVSPNNSL--------SSFDFINQIET 103 (409) Q Consensus 41 ~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~---------~~~~~~~L~~~pn~~~--------s~~~f~~~~~~ 103 (409) -++-+..+++|++||++||++||++|++++.+.+.. ......+++.+||+.+ ++.+||+.++. T Consensus 1 l~~l~~~n~~v~~ci~~ia~~ia~~p~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~pn~~~~~~~~~~~t~~~~~~~~~~ 80 (467) T protein:vir:31 1 MAELLEHNETHAKCVHAKSRYVAGFGINIIPHPEAEDPDRDGEQYERVWDFWFGDDSNWQVGPMESERATATNVLQTAWT 80 (467) T ss_pred ChhhhhcCHHHHHHHHHHHHhhhcCCeEEEEccCcccccchhhhhhhHHHHhhccCCCccccchhhHhhHHHHHHHHHHH Confidence 344455689999999999999999999998543211 1222346677788754 67799999999 Q ss_pred HHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc-------eeEEEE---------------------EcCCCe Q lcl|Aclame:pro 104 IRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-------ELYYSI---------------------HAATGN 155 (409) Q Consensus 104 ~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~-------~~~~~~---------------------~~~~g~ 155 (409) +++++||+|++++|+..|++.+|+||+|.+|++..+..+. ..++.+ ....|. T Consensus 81 ~l~l~Gn~~i~~~r~~~G~~~~l~~l~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (467) T protein:vir:31 81 DYEAIGWLTIEILTQTDGTPTGLAYVPGHTIRKRMDERGFVQLLEEKEKYFGVAGDRYQTNGNGDLDPVFVDADDGSTGT 160 (467) T ss_pred HHHhcCCeEEEEEECCCCcEEEEEEeCCceeEeeeecceeEeecCCceeeEEeccccceeecccceeeeeeeeccccccc Confidence 9999999999999999999999999999999987765421 111111 123456 Q ss_pred EEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 156 KLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQVLEDFKQY 232 (409) Q Consensus 156 ~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 232 (409) .+.+++++|||++.+++.++.+|+||+.++...+..+.++++++.+++.++ +++++. .++.+++++++++++.|++. T Consensus 161 ~~~~~~~diih~r~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~~l~~e~~~~~~~~~~~~ 240 (467) T protein:vir:31 161 SVSNPANELIFKRNHSPLYPHYGAPDIIPAVKTIRGDSAAQDYNIDFFENDGVPRIAIIVKGAELTEKGREEMRNLIEDN 240 (467) T ss_pred eeEeccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHHHHHhh Confidence 778999999999999888999999999999999999999999988877664 455554 56789999999999999987 Q ss_pred hc--------------CCCceeecCCCceeeec-------c-CChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc Q lcl|Aclame:pro 233 YE--------------ENGGILFQEPGVEIEPL-------P-KKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF 290 (409) Q Consensus 233 ~~--------------~~~~~~vl~~g~~~~~l-------~-~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~ 290 (409) ++ ++++++++++|++++++ + .++.|+||.|.+++++++||++|||||.+||..+++++ T Consensus 241 ~~~~~~~~~~~~~g~~n~~~~~~l~~g~~~~~~~~~~~~ls~~~~~d~qf~e~~~~~~~~Ia~~fgVpp~~lG~~~~~~~ 320 (467) T protein:vir:31 241 NEDNHRTAFIETEKIVQNEDYLNLADGADRSDVEIRLEPLTVGIDEEASFLEFRGRNEHDILKVHDVPPVIAGVVESGAF 320 (467) T ss_pred hcchhhhhhhhhcccccccccccccCCCcccccceeEEeccccChhhHHHHHHHHHHHHHHHHHhCCCHHHcccCCCCCc Confidence 65 34567788777655544 3 36789999999999999999999999999998776665 Q ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh Q lcl|Aclame:pro 291 -AKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE 369 (409) Q Consensus 291 -~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 369 (409) ++.|++.+.|++.+|.|+++.|+++||++|++......+++++|+++.+++.|.++++++++.++++|++|+||+|+++ T Consensus 321 ~s~~e~~~~~f~~~~l~P~~~~ie~~ln~~l~~~~~~~~~~~i~f~~~~l~~~d~~~~~~~~~~~~~~G~~T~NE~R~~~ 400 (467) T protein:vir:31 321 STDAEEQRKEFAEETIQPKQHDFGELLYELVHKQGLDAPDWTIEFELAKPDTKLQDVEIASQRVQAMQGLLTVNELRDEF 400 (467) T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceEEEecchhhccCHHHHHHHHHHHHhCCCcCHHHHHHHh Confidence 6899999999999999999999999999999988777889999999999999999999999999999999999999999 Q ss_pred CCCCCCCCCEEeeccccc---------chhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 370 DLPPVEGGDKPLISGDLY---------PIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 370 g~~p~~~gd~~~~~~n~~---------~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |+||+++++ +.+.+.. |.+...+ +..+++++..++. T Consensus 401 Gl~pi~d~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 445 (467) T protein:vir:31 401 GFEPFPEEH--VYGGETLVAEVTGGSGPGGGIGD--QIEQLVEDRADEI 445 (467) T ss_pred CCCCCCccc--ccCCcccccccccccCCCCcccC--cCCCCCCCcccch Confidence 999996544 2222221 1111100 0011111111111 No 83 >protein:vir:95599 Length: 563 # NCBI annotation: ORF014 # Family: family:all:2446 # MgeID: mge:1577 # MgeName: G1 # Cross-refs: genbank:acc:YP_240900;genbank:gi:66394963;genbank:GeneID:5132540 Probab=100.00 E-value=4e-70 Score=401.04 Aligned_cols=401 Identities=11% Similarity=0.098 Sum_probs=285.5 Q ss_pred Ccc---------hhhhhhhhhhhhcccccCccccccccc-ccC------CCCc-cccchhHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MAK---------ENIVTRIKKKLIDNWIDQSASKLYDFS-PWK------NKSF-WGVINNTLETNETIFSAITKLSNSMA 63 (409) Q Consensus 1 M~~---------~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~-~~v~~~~~~~~~~v~~~i~~ia~~ia 63 (409) -.+ ++.+...++.-.. ....+.....+.. ... ...+ .....+.+..++++++||+.+++.|| T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA 109 (563) T protein:vir:95 31 ANIKKIEQDNKEYQDLTKSLYGQQQ-AYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVA 109 (563) T ss_pred hhHhhhhccchhHHHHHhhhccCCC-cchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHH Confidence 000 1112211111000 0000111111100 000 0011 11124566678899999999999888 Q ss_pred c-------------CceeEeeccccc-------cchhhhhh-hc--cccCC-CCHHHHHHHHHHHHHhcCCeEEEee--e Q lcl|Aclame:pro 64 S-------------LPLKMYEDYKVV-------NTEVSDLL-TV--SPNNS-LSSFDFINQIETIRNEKGNAYVLIE--R 117 (409) Q Consensus 64 ~-------------lp~~~~~~~~~~-------~~~~~~~L-~~--~pn~~-~s~~~f~~~~~~~~l~~G~a~~~~~--~ 117 (409) . +|+++++.+... .+.+...| +. .|+++ +|+++|+++++.+++++||+|++++ | T Consensus 110 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~r 189 (563) T protein:vir:95 110 MYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNK 189 (563) T ss_pred HHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEe Confidence 5 577776544211 13333333 22 23333 6899999999999999999999865 7 Q ss_pred cCCCceeEEEeeCCcceEEEEcCCccee----EEEEEcCCCeEEEEccceEEEecCcCcc---cccccccHHHHHHHHHH Q lcl|Aclame:pro 118 DIYHQPSKLFLLNPDVVEMLIENQSREL----YYSIHAATGNKLIVHNMDMLHFKHIVAS---NMVQGISPIDVLKNTTD 190 (409) Q Consensus 118 ~~~G~~~~l~~l~p~~v~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~vih~~~~~~~---~~~~G~sp~~~~~~~i~ 190 (409) +..|++.+|+||+|++|++..+.++... .|++....+....+++++|||++..... .+.+|+||+.++...|. T Consensus 190 d~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~ 269 (563) T protein:vir:95 190 NNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFI 269 (563) T ss_pred cCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHH Confidence 8889999999999999999999887654 3445555556678999998866544333 36789999999999999 Q ss_pred HHHHHHHHHHHhcCCC--ceeEEecC--CcCCHHHHHHHHHHHHHHhc---CCCce-eecCCCceeeeccCChhhHHHHH Q lcl|Aclame:pro 191 FDNAVRTFNLTEMQKP--DSFMLKYG--SNVSTEKRQQVLEDFKQYYE---ENGGI-LFQEPGVEIEPLPKKYVSEDIVA 262 (409) Q Consensus 191 ~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~-~vl~~g~~~~~l~~~~~d~~~~e 262 (409) ++.++++++.++|.++ ++++++.+ ..+++++++++++.|++.++ |+|++ +|+++|++|+++++++.|+||+| T Consensus 270 ~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle 349 (563) T protein:vir:95 270 AYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEK 349 (563) T ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHH Confidence 9999999998887765 56666654 35899999999999999885 45675 78999999999999999999999 Q ss_pred HHHHHHHHHHHHhcCChhhcCCcccC-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccce Q lcl|Aclame:pro 263 SENLTRERVANVFQLPSIFLNARSNT-----------NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRY 331 (409) Q Consensus 263 ~~~~~~~~Ia~~fgvp~~~l~~~~~~-----------~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~ 331 (409) .+++++++||++|||||.+||..+.+ ++++.|++.+.|++.||.|+++.||++||++|++..+ .. T Consensus 350 ~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~----~~ 425 (563) T protein:vir:95 350 WLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG----DK 425 (563) T ss_pred HHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc----cc Confidence 99999999999999999999876544 4578999999999999999999999999999997643 23 Q ss_pred EEecchhhhhhhHHHHHHHHH--HHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccccccc------------ Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYF--KAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRK------------ 397 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~--~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~------------ 397 (409) +.|+ +++.|.+++++.+. +++++|+||+||+|+++|+||+||||++++|.|+.+++....... T Consensus 426 ~~~~---f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (563) T protein:vir:95 426 YTFQ---FVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQM 502 (563) T ss_pred cEEE---eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhh Confidence 3444 34567777777654 468899999999999999999999999999999887765422110 Q ss_pred ------------ccCCC-CCCCCCC Q lcl|Aclame:pro 398 ------------SLKGG-DKNVNES 409 (409) Q Consensus 398 ------------~~~gg-~~n~~~~ 409 (409) ..++. +.+++++ T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (563) T protein:vir:95 503 MMSLLEGDNDDSEEGQSTDSSNDDK 527 (563) T ss_pred cccccCCCCCCCCCCCCCCCCCCcc Confidence 00111 1111111 No 84 >protein:vir:99312 Length: 563 # NCBI annotation: putative portal protein # Family: family:all:2446 # MgeID: mge:1655 # MgeName: K # Cross-refs: genbank:acc:YP_024471;genbank:gi:48696430;genbank:GeneID:2948040 Probab=100.00 E-value=4e-70 Score=401.04 Aligned_cols=401 Identities=11% Similarity=0.098 Sum_probs=285.5 Q ss_pred Ccc---------hhhhhhhhhhhhcccccCccccccccc-ccC------CCCc-cccchhHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MAK---------ENIVTRIKKKLIDNWIDQSASKLYDFS-PWK------NKSF-WGVINNTLETNETIFSAITKLSNSMA 63 (409) Q Consensus 1 M~~---------~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~-~~v~~~~~~~~~~v~~~i~~ia~~ia 63 (409) -.+ ++.+...++.-.. ....+.....+.. ... ...+ .....+.+..++++++||+.+++.|| T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~n~i~~~~I~t~~~~vA 109 (563) T protein:vir:99 31 ANIKKIEQDNKEYQDLTKSLYGQQQ-AYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILNAIILTRSNQVA 109 (563) T ss_pred hhHhhhhccchhHHHHHhhhccCCC-cchhhhHhhhcccccccccccCCCCcccHHHHHHHhhcchHHHHHHHHHHHHHH Confidence 000 1112211111000 0000111111100 000 0011 11124566678899999999999888 Q ss_pred c-------------CceeEeeccccc-------cchhhhhh-hc--cccCC-CCHHHHHHHHHHHHHhcCCeEEEee--e Q lcl|Aclame:pro 64 S-------------LPLKMYEDYKVV-------NTEVSDLL-TV--SPNNS-LSSFDFINQIETIRNEKGNAYVLIE--R 117 (409) Q Consensus 64 ~-------------lp~~~~~~~~~~-------~~~~~~~L-~~--~pn~~-~s~~~f~~~~~~~~l~~G~a~~~~~--~ 117 (409) . +|+++++.+... .+.+...| +. .|+++ +|+++|+++++.+++++||+|++++ | T Consensus 110 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p~~~t~~~f~~~lv~~lll~Gn~~~~~~~~r 189 (563) T protein:vir:99 110 MYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIEDFIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNK 189 (563) T ss_pred HHhhhhhhhcccccceeEEeecCCCcchhhhhhhHHHHHHhhhcCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEEEEe Confidence 5 577776544211 13333333 22 23333 6899999999999999999999865 7 Q ss_pred cCCCceeEEEeeCCcceEEEEcCCccee----EEEEEcCCCeEEEEccceEEEecCcCcc---cccccccHHHHHHHHHH Q lcl|Aclame:pro 118 DIYHQPSKLFLLNPDVVEMLIENQSREL----YYSIHAATGNKLIVHNMDMLHFKHIVAS---NMVQGISPIDVLKNTTD 190 (409) Q Consensus 118 ~~~G~~~~l~~l~p~~v~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~vih~~~~~~~---~~~~G~sp~~~~~~~i~ 190 (409) +..|++.+|+||+|++|++..+.++... .|++....+....+++++|||++..... .+.+|+||+.++...|. T Consensus 190 d~~G~~~~L~pl~p~~V~v~~~~~g~~~~~~~~y~~~~~g~~~~~~~~~evI~~~~~~~~d~~~~~~G~Spi~~a~~~i~ 269 (563) T protein:vir:99 190 NNKTKLEKFIAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPRTELSSSGYGLSEVEIAMKEFI 269 (563) T ss_pred cCCCceEEEEEeCCceeEEEECCCCceeccceeEEEEeCCceeEEecCcceEEEeccCCCCcccCcccchHHHHHHHHHH Confidence 8889999999999999999999887654 3445555556678999998866544333 36789999999999999 Q ss_pred HHHHHHHHHHHhcCCC--ceeEEecC--CcCCHHHHHHHHHHHHHHhc---CCCce-eecCCCceeeeccCChhhHHHHH Q lcl|Aclame:pro 191 FDNAVRTFNLTEMQKP--DSFMLKYG--SNVSTEKRQQVLEDFKQYYE---ENGGI-LFQEPGVEIEPLPKKYVSEDIVA 262 (409) Q Consensus 191 ~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~-~vl~~g~~~~~l~~~~~d~~~~e 262 (409) ++.++++++.++|.++ ++++++.+ ..+++++++++++.|++.++ |+|++ +|+++|++|+++++++.|+||+| T Consensus 270 ~~~~~~~~~~~~f~ng~~p~giL~~~~~~~ls~e~~~~~~~~~~~~~~G~~nagk~~~vl~~G~~~~~l~~~~~d~qfle 349 (563) T protein:vir:99 270 AYNNTESFNDRFFSHGGTTRGILQIRSDQQQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFEK 349 (563) T ss_pred HHHHHHHHHHHHHHccCCCceEEEeCCCCCCCHHHHHHHHHHHHHHhccccccccceEEcCCCceEEeccCChhHHHHHH Confidence 9999999998887765 56666654 35899999999999999885 45675 78999999999999999999999 Q ss_pred HHHHHHHHHHHHhcCChhhcCCcccC-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccce Q lcl|Aclame:pro 263 SENLTRERVANVFQLPSIFLNARSNT-----------NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRY 331 (409) Q Consensus 263 ~~~~~~~~Ia~~fgvp~~~l~~~~~~-----------~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~ 331 (409) .+++++++||++|||||.+||..+.+ ++++.|++.+.|++.||.|+++.||++||++|++..+ .. T Consensus 350 ~~~~~~~~Ia~afgVPp~~lG~~~~~~~~~~~~~ss~~~sn~e~~~~~f~~~tL~P~l~~ie~~ln~~L~~~~~----~~ 425 (563) T protein:vir:99 350 WLNYLINIISALYGIDPAEIGFPNRGGATGSKGGSTLNEADPGKKQQQSQNKGLQPLLRFIEDLVNRHIISEYG----DK 425 (563) T ss_pred HHHHHHHHHHHHhCCCHHHccccccccccccccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhcc----cc Confidence 99999999999999999999876544 4578999999999999999999999999999997643 23 Q ss_pred EEecchhhhhhhHHHHHHHHH--HHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccccccc------------ Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYF--KAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRK------------ 397 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~--~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~------------ 397 (409) +.|+ +++.|.+++++.+. +++++|+||+||+|+++|+||+||||++++|.|+.+++....... T Consensus 426 ~~~~---f~r~D~~~~~e~~~~~~~~~~G~lT~NE~R~~~gl~Pi~gGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (563) T protein:vir:99 426 YTFQ---FVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKKPIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQM 502 (563) T ss_pred cEEE---eccCCHHHHHHHHHHHHHhcCCccCHHHHHHHhCCCCCCCcceeecccccccccccccccCCCccccchhhhh Confidence 3444 34567777777654 468899999999999999999999999999999887765422110 Q ss_pred ------------ccCCC-CCCCCCC Q lcl|Aclame:pro 398 ------------SLKGG-DKNVNES 409 (409) Q Consensus 398 ------------~~~gg-~~n~~~~ 409 (409) ..++. +.+++++ T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (563) T protein:vir:99 503 MMSLLEGDNDDSEEGQSTDSSNDDK 527 (563) T ss_pred cccccCCCCCCCCCCCCCCCCCCcc Confidence 00111 1111111 No 85 >protein:vir:4194 Length: 540 # NCBI annotation: putative portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:88 # MgeName: psiM100 # Cross-refs: genbank:acc:NP_071819;genbank:gi:11863102;genbank:GeneID:1257604 Probab=100.00 E-value=4.8e-69 Score=395.14 Aligned_cols=389 Identities=13% Similarity=0.077 Sum_probs=281.8 Q ss_pred Ccchhh--hhhhhhhhhcccccCcccccccccccCCCCccc-cchhHHhhhHHHHHHHHHHHHhhccCceeEeecccccc Q lcl|Aclame:pro 1 MAKENI--VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWG-VINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVN 77 (409) Q Consensus 1 M~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~ 77 (409) |....+ ..++++.....-+.. . .+..|....+.. ...+.+..+++|++||++||++||++|++++.+... T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~pp~~~~~La~~~~~n~~v~scI~~ia~~ia~~~~~i~~~~~~-- 78 (540) T protein:vir:41 6 LSIKSLEKYRAIKGDTDSQALKE--D---RFEEYVEPKVHPLVLLSLLQVNPYHASACSIKANDILRTGYLIDGDDGG-- 78 (540) T ss_pred cChhhccchhhhhcccccccccc--C---CCCccccCCCCHHHHHHHHHhcHHHHHHHHHHHHHHhcCCceEecCccc-- Confidence 333211 222332211111110 0 111111111111 124667789999999999999999999999765432 Q ss_pred chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce-------eEEEEE Q lcl|Aclame:pro 78 TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE-------LYYSIH 150 (409) Q Consensus 78 ~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~-------~~~~~~ 150 (409) +.. ..||+++|+.+||++++.+++++||||++++|+..|++.+|+||+|.+|++..+..+.. ..|... T Consensus 79 --~~~---~lpN~~~t~~~f~~~~v~dlll~Gnayv~i~r~~~G~~~~L~~i~~~~V~v~~~~~~~~~~~d~~~~~~~~~ 153 (540) T protein:vir:41 79 --VEE---LLRACRPSFEFILLQALEDLQVFNYCTLEVVRDDQGEPVRLDYIPAHTVRVHRDGSRYMQTWDGIHVTYFKD 153 (540) T ss_pred --hhh---hccCCCCCHHHHHHHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCcceEEeEcCceeEeeecCceeeeeec Confidence 222 34999999999999999999999999999999999999999999999999877654322 111110 Q ss_pred ---------cCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcCCH Q lcl|Aclame:pro 151 ---------AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNVST 219 (409) Q Consensus 151 ---------~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 219 (409) ......+.+++++|||+|.+++.++++|+||+.++...+.++.++++++.++|.++ ++++++.++.+++ T Consensus 154 ~~~~~~~~~~~g~~~~~~~~~eViHir~~~~~~~~~G~Spi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~giL~~~g~l~~ 233 (540) T protein:vir:41 154 YRYEGEVNPDNGEDQDGVGANEIIFIHLPSPICSYYGVPRYLSAAPSILAMQKIDEYNYAFFDNYTIPSYVITVTGEFED 233 (540) T ss_pred ccccceeeccccccceeecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCcccCc Confidence 11223467899999999999889999999999999999999999999998877665 5677777665544 Q ss_pred HH----------HHHHHHHHHHHhc----CCCceeecC------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCCh Q lcl|Aclame:pro 220 EK----------RQQVLEDFKQYYE----ENGGILFQE------PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPS 279 (409) Q Consensus 220 ~~----------~~~~~~~~~~~~~----~~~~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~ 279 (409) ++ .+++++.|++.++ ++|+++|++ +|++|++++++++|+||+|.+++++++||++||||| T Consensus 234 e~~~~~~~~~~~~~~~~~~~~~~~~g~~~nag~~~vLe~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~eIa~afgVPp 313 (540) T protein:vir:41 234 EMELGSDGEPTGRTVLQGLIEDNFKYLKEAPHTPLVFSIPGGDTVEVTFTPLNTSQKELSFREYAAEKKHDIAAAHMIDP 313 (540) T ss_pred hhccchHHHHHHHHHHHHHHHHHhccccccccceEEEecCCCcccceeEEecccchhHHHHHHHHHHHHHHHHHHhCCCH Confidence 32 3555566666553 578888884 799999999999999999999999999999999999 Q ss_pred hhcCCccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhc Q lcl|Aclame:pro 280 IFLNARSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRS 357 (409) Q Consensus 280 ~~l~~~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~ 357 (409) .+||..+. .++++.|++.+.|+++||.|++++||++||++|++.. ..+.+++||.+.+++.|.++ .+.+++++ T Consensus 314 ~~lG~~~~~~~n~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~--~~~~~i~f~~~~ll~~D~~~---~~~~lv~~ 388 (540) T protein:vir:41 314 YRLGITDVGPLGGNFAEVARRTYYESVVRPQQEIVSSVLTDFIQLKL--DPGARFVFNEEILMESEFVH---NYALLVQC 388 (540) T ss_pred HHcCcccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--CCceEEEecchhhcchHHHH---HHHHHHhC Confidence 99987654 4678999999999999999999999999999998754 35789999999999887554 45678999 Q ss_pred CCcCHHHHHHHh-CCCCCCCCCEEeecccccchhcccccccccCCCCCCC-CCC Q lcl|Aclame:pro 358 GYYTINDIREWE-DLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNV-NES 409 (409) Q Consensus 358 g~~T~NE~R~~~-g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~-~~~ 409 (409) |++|+||+|+.+ |++| ++|.++.|.|+...+...... ..++.+.++ +.. T Consensus 389 G~lT~NE~Re~L~g~e~--gdd~~l~p~n~~~~~~~~~~~-~~~~~~~~~~~k~ 439 (540) T protein:vir:41 389 GVLTPSEVREKLFGLDG--GPDMFMVPSSIGKSAMKRQKR-NYEKNQINEIKRT 439 (540) T ss_pred CCCCHHHHHHHhCcCcC--CCccccccccccccccccccc-ccCCCCccccccc Confidence 999999999854 4443 446667787875433211110 000000000 000 No 86 >protein:vir:4156 Length: 542 # NCBI annotation: portal protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:87 # MgeName: psiM2 # Cross-refs: genbank:acc:NP_046965;genbank:gi:9630535;genbank:GeneID:1261709 Probab=100.00 E-value=8.3e-69 Score=393.83 Aligned_cols=396 Identities=13% Similarity=0.043 Sum_probs=285.0 Q ss_pred Ccc--hhhhhhhhhhhh-cccccCcccccccccccCCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCceeEeeccccc Q lcl|Aclame:pro 1 MAK--ENIVTRIKKKLI-DNWIDQSASKLYDFSPWKNKSFWGV-INNTLETNETIFSAITKLSNSMASLPLKMYEDYKVV 76 (409) Q Consensus 1 M~~--~~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 76 (409) |.- +.|.+....+.. +.-..........+..+....+... ..+.+..+++|++||++||++||++||+++++... T Consensus 1 ~~~~~~~i~s~~~~~~i~~~~~~s~~~~~~~~~~~~~pp~~~~~la~l~~~n~~v~scI~~ia~~IA~l~~~~~~~~~~- 79 (542) T protein:vir:41 1 MFNYHLSIRSLEKYKAIKREEVESQALGETRFEEYVEPKVNPLVLLSLLQVNPYHASACSIKANDIIRTGYILEGDDEG- 79 (542) T ss_pred CccccccccccccchhhhhccccccccccccCCccccCCCCHHHHHHHHhhcHHHHHHHHHHHHHHhhCceeeecccch- Confidence 211 123332221111 1111111111111111211111111 12456678999999999999999999999754432 Q ss_pred cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE-------EEE Q lcl|Aclame:pro 77 NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY-------YSI 149 (409) Q Consensus 77 ~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~-------~~~ 149 (409) .+++..||+++|+++|++.++.+++++||||+++.|+..|++.+|+||+|.+|++..+.++.... |.. T Consensus 80 -----~l~~~lpN~~~s~~~f~~~~v~~lll~Gnayi~i~rd~~G~~~~L~~l~~~~v~v~~d~~~~~~~~~~~~~~~~~ 154 (542) T protein:vir:41 80 -----VVDEFIRACKPSFEYVLLRALEDLQVFNYCTLEVVRDDRGDPIRFEYIPSHTIRVHKDGSRYRQTWDGVNITHFK 154 (542) T ss_pred -----hhhhhcCCCCCCHHHHHHHHHHHHhhcCCeEEEEEEcCCCcEEEEEEEcCcceEEEEcCCeeEeeecCCcceeEE Confidence 24455699999999999999999999999999999999999999999999999998776543221 111 Q ss_pred Ec--------CCC-eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecC---- Q lcl|Aclame:pro 150 HA--------ATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYG---- 214 (409) Q Consensus 150 ~~--------~~g-~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~---- 214 (409) .. ..| ....++++||||+|.+++.++++|+||+.++..++.++.++++++.++|.++ ++++++.+ T Consensus 155 ~y~~~~~~~~~~g~~~~~~~~~eIiHir~~~~~~~~~Glspi~~~~~~i~~~~~~~~~~~~~f~Ng~~p~gIL~~~~~l~ 234 (542) T protein:vir:41 155 DYRYEGEINPETGEDQDSVGANELVFIHIPSPVCSYYGVPRYVSAAPAILAMQKIDEYNYAFFDNYTIPSYVITVTGEFE 234 (542) T ss_pred eecccccccccccccccccCcccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCccEEEEeCCccc Confidence 11 111 2345788999999999888999999999999999999999999998877665 55666553 Q ss_pred ------CcCCHHHHHHHHHHHHHHhc----CCCceeecC------CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 215 ------SNVSTEKRQQVLEDFKQYYE----ENGGILFQE------PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLP 278 (409) Q Consensus 215 ------~~~~~~~~~~~~~~~~~~~~----~~~~~~vl~------~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp 278 (409) ..+++++++++++.|++.+. +.|+++|++ +|++|+++++++.|++|+|.++++.++||++|||| T Consensus 235 de~~~~~~~~~e~~~~lk~~~~~~~~g~~~n~gk~~vL~~~~~~~~g~~~~pl~~~~~d~qfle~~~~~~~~Ia~afgVP 314 (542) T protein:vir:41 235 DELEEDPDGNPTGRTVIQALIEDNFKHLKEAPHTPLVFSIPGGDTVKVTFTPLNTSQKELSFREYAAEKKYDIAAAHMID 314 (542) T ss_pred cccccccccCHHHHHHHHHHHHHHHhhhhcccCceeEeeccCCcccceeEEEcCCChhHHHHHHHHHHHHHHHHHHhCCC Confidence 35688999999999998774 467888874 78999999999999999999999999999999999 Q ss_pred hhhcCCcccC--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHh Q lcl|Aclame:pro 279 SIFLNARSNT--NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVR 356 (409) Q Consensus 279 ~~~l~~~~~~--~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~ 356 (409) |.+||..+.+ ++++.|++.+.|++.+|.|+++.||++||++|+++.+ .+.+++|+.+.+++.|. ++.+..+++ T Consensus 315 p~~lG~~~~~t~n~sn~Eq~~~~f~~~tL~P~~~~ie~~ln~~L~~~~~--~~~~~~f~~~~ll~~d~---~~~~~~~v~ 389 (542) T protein:vir:41 315 PYRLGIADTGPLGGNFAEVTRRTYYESVVRPQQNIISSILTDFFQVKFN--PKTRFKFNDETLLESDS---VRNCALLVQ 389 (542) T ss_pred HHHhCcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--CceEEEecchhhcchHH---HHHHHHHHh Confidence 9999987655 4589999999999999999999999999999988754 36789999999988764 445677999 Q ss_pred cCCcCHHHHHHHhCCCCCCCCC-EEeecccccchhccccc---c--------c-ccCCCC-CCCC--CC Q lcl|Aclame:pro 357 SGYYTINDIREWEDLPPVEGGD-KPLISGDLYPIDTPLEL---R--------K-SLKGGD-KNVN--ES 409 (409) Q Consensus 357 ~g~~T~NE~R~~~g~~p~~~gd-~~~~~~n~~~~~~~~~~---~--------~-~~~gg~-~n~~--~~ 409 (409) +|++|+||+|+.+ +++|+|| .++.|.|+......... + + ..++++ .++- +. T Consensus 390 ~GilT~NE~Re~L--~g~~pgdd~~l~p~~~~~~~~~~~~~n~~~~~~~~~~k~~~k~~~~~~~~~~~~ 456 (542) T protein:vir:41 390 SGVLTPAEARERL--FGLDGGPDIFMVPSKGAAKSVKRQERNYEKNQIREIRKIYAKYRPRFNEIISSK 456 (542) T ss_pred CCCCCHHHHHHhh--CCCCCCCccccccccccccccccCCcCCCCCchhhhhhcccccCcccccccccc Confidence 9999999999853 3444444 45566665332111000 0 0 011111 0100 00 No 87 >protein:vir:78641 Length: 278 # NCBI annotation: portal protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429941;genbank:gi:156603995;genbank:GeneID:5525387 Probab=100.00 E-value=5.1e-68 Score=389.50 Aligned_cols=278 Identities=95% Similarity=1.334 Sum_probs=270.9 Q ss_pred hccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC Q lcl|Aclame:pro 62 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 141 (409) Q Consensus 62 ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~ 141 (409) ||++||+++++++...+++.++|+.+||++||+++||+.++.+++++||||++++|+..|.+.+|+|++|++|++..+.+ T Consensus 1 ia~l~~~~~~~~~~~~~~l~~lL~~~PN~~~t~~~f~~~~~~~ll~~Gna~~~i~r~~~G~~~~l~~l~~~~v~v~~~~~ 80 (278) T protein:vir:78 1 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 80 (278) T ss_pred CccceeEEEecCcccccHHHHHHHhcCCCCCCHHHHHHHHHHHHhhcCCEEEEEEECCCCcEEEEEEECCceeEEEEcCC Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred cceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHH Q lcl|Aclame:pro 142 SRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEK 221 (409) Q Consensus 142 ~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (409) +...+|.+...+|..+.|+++||+|++++++.++.+|.||+.++..++..+.+++++++..+++++++++..++.+++++ T Consensus 81 ~~~~~y~~~~~~g~~~~~~~~evih~~~~~~~~~~~G~s~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~e~ 160 (278) T protein:vir:78 81 SRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVGKEK 160 (278) T ss_pred CceEEEEEEcCCceEEEEccccEEEECCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCCCCHHH Confidence 99999999999999999999999999999888999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHH Q lcl|Aclame:pro 222 RQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYL 301 (409) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~ 301 (409) .++++++|++.++++|+++++++|++|+++++++.|+++.|.+++++++||++|||||.+||..++++++|.+++.+.|+ T Consensus 161 ~~~~~~~~~~~~~~~g~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgVpp~~lg~~~~~~~sn~~~~~~~~~ 240 (278) T protein:vir:78 161 RQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSVFLNARSNTNFAKNEELNRFYL 240 (278) T ss_pred HHHHHHHHHHHhccCCCceecCCCceEEEccCChhHHHHHHHHHHHHHHHHHHhCCCHHHhCCCCCCCcccHHHHHHHHH Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999 Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhh Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSY 339 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l 339 (409) +.+|.|+++.|+++||++||++.++..|.+++||.++| T Consensus 241 ~~~l~P~~~~i~~~ln~~L~~~~e~~~g~~~~f~~~~l 278 (278) T protein:vir:78 241 QHTLLPIVKQYEEEFNRKLLTKTDREKIGILNLTLNLI 278 (278) T ss_pred HHHHHHHHHHHHHHHHhhcCChhHhcCCceEEEecccC Confidence 99999999999999999999999988999999999998 No 88 >protein:vir:99452 Length: 651 # NCBI annotation: hypothetical protein # Family: family:all:1379 # ACLAME annotation(s): phi:0000161 - phage head/capsid # MgeID: mge:1595 # MgeName: BJ1 # Cross-refs: genbank:acc:YP_919077;genbank:gi:119757035;genbank:GeneID:4606105 Probab=100.00 E-value=2e-67 Score=386.26 Aligned_cols=401 Identities=11% Similarity=0.118 Sum_probs=301.0 Q ss_pred Ccchhhhhhhhhhhhc-------ccccC-------cccccccccccCCCCccccchhHHhh-hHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MAKENIVTRIKKKLID-------NWIDQ-------SASKLYDFSPWKNKSFWGVINNTLET-NETIFSAITKLSNSMASL 65 (409) Q Consensus 1 M~~~~~~~r~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~v~~~i~~ia~~ia~l 65 (409) |.-.+ +.+++..+. ....+ +....+.-.++....+.....+...+ ++++++||+++++.||++ T Consensus 1 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~e~~~~~~~~i~~~~~~iag~ 78 (651) T protein:vir:99 1 MTDTT--GETQETKVHVEGLGGEADLAKSPNSTQIPDHRIQSHNVGVNPPYNPDRLAAFLELNETLATGIRKKSRYEVGF 78 (651) T ss_pred CCCcc--ceeeeeEEEeecccccccccccccccccchhhhcccCCCCCCCCCHHHHHHHHhcChHHHHHHHHHhhhhhcc Confidence 33211 000110000 00000 00011111112222333334444555 999999999999999999 Q ss_pred ceeEeeccc-----cc-------------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEE Q lcl|Aclame:pro 66 PLKMYEDYK-----VV-------------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLF 127 (409) Q Consensus 66 p~~~~~~~~-----~~-------------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~ 127 (409) +|.+....+ +. .++........+|..+++.++++.++.|++.+|++|+.++++..|++..++ T Consensus 79 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~~t~~~i~~~~~~Dle~tGna~ieiIrn~~g~pv~L~ 158 (651) T protein:vir:99 79 GFDLVPAQGVDGDDASDAQREVARNFWRGRSSRWQTGPNQAKTPATPERVKELARQDYHGVGWLALEMLTDIEGRPVGLA 158 (651) T ss_pred CceeeecccCCCCccchHHHHHHHHHhhccchhhcccccccCCCCCHHHHHHHHHHHHHHHhhHhhhhhhcCccchhhhh Confidence 999864221 11 112222344557889999999999999999999999999999999999999 Q ss_pred eeCCcceEEEEcCCc--------------------------------ceeE----------------------------- Q lcl|Aclame:pro 128 LLNPDVVEMLIENQS--------------------------------RELY----------------------------- 146 (409) Q Consensus 128 ~l~p~~v~~~~~~~~--------------------------------~~~~----------------------------- 146 (409) ++++..+++..+... .... T Consensus 159 ~lp~~~~Rv~~~~~~~~~~~~~ll~~~pn~~~~~~~~~~~~q~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~d~ 238 (651) T protein:vir:99 159 YVPARTVRVRRPQNRFDQPRHPEEGRYVDGDVADIASRGYVQIRNGNRRYFGEAGDRYRGQEVVIDESGDEPTIRYREDE 238 (651) T ss_pred hcChhheeeecccccccchhhhhhhcccccccchhHHHHHHHHHhcCcceEEEeeccccceeeeeccCCcceeEEeccCc Confidence 999887655432110 0000 Q ss_pred -------------EEE-EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeE Q lcl|Aclame:pro 147 -------------YSI-HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFM 210 (409) Q Consensus 147 -------------~~~-~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~ 210 (409) +.+ ....+....++++||||||.+++.++++|+||+..+..++.++.++++++.++|.++ ++++ T Consensus 239 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~eViHir~~~~~~g~~G~spl~~a~~~i~~a~~a~~~~~~~f~NG~~p~gi 318 (651) T protein:vir:99 239 ESEREPIFVDRETGDVTTGDANGLENRPANELIFIPNPSILEDDYGVPDWVSAIRTISADEAAKDYNRDFFDNDTIPRMV 318 (651) T ss_pred ceeeeeecccceeeeEEEcCCCceeEecccceEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceE Confidence 000 011223456789999999999888999999999999999999999999998887765 5667 Q ss_pred Eec-CCcCCHHHHHHHHHHHHHHhcCCCceeecCC-----------CceeeeccCCh-hhHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 211 LKY-GSNVSTEKRQQVLEDFKQYYEENGGILFQEP-----------GVEIEPLPKKY-VSEDIVASENLTRERVANVFQL 277 (409) Q Consensus 211 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~-----------g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~fgv 277 (409) ++. +..+++++++++++.|++.++|+|+++||++ |++|+++++++ +|+||+|++++++++||++||| T Consensus 319 l~~~~~~ls~e~~~~lr~~~~~~~~nagk~~vL~~~~~~~~~~~~~g~~~~pls~~~~~D~qfle~r~~~~~eIa~afgV 398 (651) T protein:vir:99 319 IKVTGGELSEESKRDLRQMLNGLREESHRAVVLEVEKFQSQLDEDVEIELEPMGQGISEEMDFRQFREKNEHEIAKVLEV 398 (651) T ss_pred EEecCCCCCHHHHHHHHHHHHHHhccCCceEEeecccccccccccCCceEEEcCcCchhhHHHHHHHHHHHHHHHHHhCC Confidence 765 5679999999999999999999999998865 99999999976 5999999999999999999999 Q ss_pred ChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccc--eEEecchhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 278 PSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNR--YFKFNVKSYLRADSATQAEVYFKAV 355 (409) Q Consensus 278 p~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~--~~~~d~~~l~~~d~~~~~~~~~~~~ 355 (409) ||.+||..++++++|.|++.+.|++++|.|+++.||++||++|+++.++..++ +++|+...+++.|.+++++.+..++ T Consensus 399 Pp~~lG~~~~~~~sn~E~~~~~f~~~tL~P~~~~ie~eln~kLl~~~e~~~~~~i~~ef~~~~llr~D~~~~~e~~~~~i 478 (651) T protein:vir:99 399 PPVKIGVTDSANRSNSDQQDKDFALEVIQPEQHTFAEWLYQIIHQQALGVTDWTIEYELRGADQPKQEAQLAEQRVRAMR 478 (651) T ss_pred CHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCceEEEEeccchhhhccHHHHHHHHHHHH Confidence 99999999999999999999999999999999999999999999987776655 5677788899999999999999999 Q ss_pred hcCCcCHHHHHHHhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 356 RSGYYTINDIREWEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 356 ~~g~~T~NE~R~~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ++|+||+||+|+++|+||++ +||..+.+.++..++.+ .+||+++++.. T Consensus 479 ~~G~~T~NE~R~~lglppi~~~~gd~~l~~~~~~~~g~~------~~gge~~~~~~ 528 (651) T protein:vir:99 479 LAGVGLVDEAREELGLDPLGEPYGEMTLSEFEAEVAGDV------AGGGETEAVHE 528 (651) T ss_pred hCCCcCHHHHHHHhCCCCCCCcccccccccccccccccc------ccCCCCccccc Confidence 99999999999999999995 48888887776655432 22222221111 No 89 >protein:vir:79772 Length: 648 # NCBI annotation: portal protein # Family: family:all:3222 # MgeID: mge:1874 # MgeName: 0305phi8-36 # Cross-refs: genbank:acc:YP_001429612;genbank:gi:156564103;genbank:GeneID:5525537 Probab=100.00 E-value=4.7e-65 Score=373.24 Aligned_cols=398 Identities=12% Similarity=0.070 Sum_probs=283.1 Q ss_pred Ccchhh-------------hhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAKENI-------------VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~~~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |.+.+- +.|....+..... ...++. .++.++..+ .+.+..+|.|++||++||++||++|| T Consensus 43 ~~~~~~~~~~~~~d~~~~~~~r~g~~~~~~~~-----g~~~~~-epp~d~~~l-~~l~~~np~V~~aI~iia~~ia~l~~ 115 (648) T protein:vir:79 43 MPKGGGGGGSAKRDPKMSLVKRIGLAIMDGGG-----GGRDFE-EPEFDFNEI-TSAYNTEGYVRQAVDKYIEMMFKADW 115 (648) T ss_pred cCCCCcccccccccchhHHHHHhHHHHHhhcC-----Cccccc-cCCcCHHHH-HHHHhcChHHHHHHHHHHHHHhhCcc Confidence 222111 2222111111111 111111 122233332 35577899999999999999999999 Q ss_pred eEeecccc-ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc---------------eeEEEeeCC Q lcl|Aclame:pro 68 KMYEDYKV-VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ---------------PSKLFLLNP 131 (409) Q Consensus 68 ~~~~~~~~-~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~---------------~~~l~~l~p 131 (409) .+..+++. .......++..+||+++|+++||+.++.+++++||||++++|+..|. +.++||++| T Consensus 116 ~i~~~~~~~~~~~~~~~ll~rPn~~~t~~~f~~~l~~~lll~GNAYveiiRd~~G~~~~~l~~~~~~~~~~v~~l~pl~p 195 (648) T protein:vir:79 116 DFVSKNPNAVEYIRMRFTLMAEATQIPTNQLFIEIAEDLVKYCNVVIAKSRAKDALPFQGMNVMGVGDSMPVAGYFPLNL 195 (648) T ss_pred eEEecCCccchhhHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCeEEEEEecCCCccchhhhhhhhccccceeeeEeecC Confidence 98876543 22333445667999999999999999999999999999999999884 478999999 Q ss_pred cceEEEEcCCcceeEEEEEcCC-CeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ce Q lcl|Aclame:pro 132 DVVEMLIENQSRELYYSIHAAT-GNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DS 208 (409) Q Consensus 132 ~~v~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~ 208 (409) .++++..+.+|.+..|.++... +..+.|++++||||+..++.++++|+||+.++...|.+..++++++.++|.++ |+ T Consensus 196 ~~v~v~~d~~g~~~~Y~y~~~g~~~~~~~~~~dIIHik~~~~~d~~~GlSpi~~a~~aI~l~~aa~~~~~~fF~NGa~P~ 275 (648) T protein:vir:79 196 ASMKVKRDKFGMIKGWQQEQEGQDKPQKFKPEDIVHIYYKREKGRAFGTPWLLPALDDIRALRQVEENVLRLVYRNLHPL 275 (648) T ss_pred ceeEEEEcCCCceeeeEEEecCCceeEEecCccEEEEccCCCCCCceeccHHHHHHHHHHHHHHHHHHHHHHHhccCCcc Confidence 9999999999998888876544 45678999999999988888999999999999999999999999988777665 45 Q ss_pred eEEecC-CcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccC----ChhhHHHHHHHHHHHHHHHHHhcCChhhcC Q lcl|Aclame:pro 209 FMLKYG-SNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPK----KYVSEDIVASENLTRERVANVFQLPSIFLN 283 (409) Q Consensus 209 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~----~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~ 283 (409) ++++.+ .....++.++++++|.+.+.+ ..+.++++++..+++ +++|+||++.+++++++||++|||||.+|| T Consensus 276 gil~~~~~~~~~e~~k~~~e~~~~~~~~---~~i~gg~v~~~~~~i~~~~s~~dlqfle~rk~~~~eIa~aFgVPP~lLG 352 (648) T protein:vir:79 276 WHVKVGLEQEGFGAEEGEVDLVRGEVEN---MDVEGGMVTTERVNISSIASNQIIDAKEYLKHFEQRAFTVLGVSELMMG 352 (648) T ss_pred EEEEeCCCccchHHHHHHHHHHHHhccc---ccccccccccceeeccccCCHHHHHHHHHHHHHHHHHHHHhCCCHhHcc Confidence 666553 334556666777777766654 233344444444333 568999999999999999999999999999 Q ss_pred CcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cChhh----ccccceEEecchhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 284 ARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKL----LTKTD----REKNRYFKFNVKSYLRADSATQAEVYFKAV 355 (409) Q Consensus 284 ~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~l----l~~~~----~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~ 355 (409) ..+++++++.+++...| ..++.|++..++..++.++ +.+.. ....++++|+++++++.|.+++++.+.+++ T Consensus 353 ~~~~ss~stae~~~~~~-~~~i~~l~~~i~~~le~~~~~~ll~e~~l~~~l~~d~~ieF~~~~Llr~D~~~~a~~~~~l~ 431 (648) T protein:vir:79 353 RGGTASRSTGDNLSSDF-KDRIKALQKVMATFINEFMVKEILMEGGFDPVLNPDDKVEFRFNEIDMDSKIKLENQAVFLY 431 (648) T ss_pred cCCCccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccceEEEeecccchhhHHHHHHHHHHHH Confidence 88888888887776554 6678887776665555433 22211 123456899999999999999999999999 Q ss_pred hcCCcCHHHHHHHhCCCCCCCCC-EEeecccccchhccccc---cc-------ccCCCCCCCCC--C Q lcl|Aclame:pro 356 RSGYYTINDIREWEDLPPVEGGD-KPLISGDLYPIDTPLEL---RK-------SLKGGDKNVNE--S 409 (409) Q Consensus 356 ~~g~~T~NE~R~~~g~~p~~~gd-~~~~~~n~~~~~~~~~~---~~-------~~~gg~~n~~~--~ 409 (409) ++|+||+||+|+++|+||+|+|+ ..++..++.+..+.... +. ...+++....+ + T Consensus 432 ~~GilT~NEaR~~lGlpPi~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~eg~~~e~~~ 498 (648) T protein:vir:79 432 EHNAISEDEMRELIGRDPVDDGEGRAKMHLQMVTIAQATALAALAPTPAGGSSASASGDKKKKATDN 498 (648) T ss_pred hCCCcCHHHHHHHhCCCCCCCCCCccccccccccchhccccccCCCCCCCCCCCCccccccccccCC Confidence 99999999999999999998765 34555665554321110 00 01111110000 0 No 90 >protein:vir:79150 Length: 368 # NCBI annotation: bacteriophage gpQ # Family: family:all:196 # MgeID: mge:1863 # MgeName: RSA1 # Cross-refs: genbank:acc:YP_001165254;genbank:gi:145708079;genbank:GeneID:5247161 Probab=100.00 E-value=2.6e-52 Score=303.40 Aligned_cols=336 Identities=13% Similarity=0.137 Sum_probs=241.4 Q ss_pred Ccchhhhh--hhhhh-hhccccc-------Ccccccccccc-----cCCC----Cccccchh-HHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MAKENIVT--RIKKK-LIDNWID-------QSASKLYDFSP-----WKNK----SFWGVINN-TLETNETIFSAITKLSN 60 (409) Q Consensus 1 M~~~~~~~--r~~~~-~~~~~~~-------~~~~~~~~~~~-----~~~~----~~~~v~~~-~~~~~~~v~~~i~~ia~ 60 (409) |.+-+--. |.... ....... ........|+. +.+. +|..+... .+.+.|+-+.|+..+.+ T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fg~p~~~~~~~~~~~~~~~~~~~~~~~~pi~~~~la~~~~ 80 (368) T protein:vir:79 1 MSRNKTRRAARAASAHVRTANTDAPTEHHTDRAAQAEVFSFGDPVEVLDRRELLDYVECMRMGQWYEPPMPWDGLARSFR 80 (368) T ss_pred CCccccccchhccCcccccccccCcchhhccccCceEEEEcCCceeecchhhHHHHHHHHhccchhccCcCHHHHHHHHh Confidence 77632111 00000 0000000 00011111111 1111 11112111 24444544555443333 Q ss_pred hhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcC Q lcl|Aclame:pro 61 SMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIEN 140 (409) Q Consensus 61 ~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~ 140 (409) .- +.+- ......+++. .|..+||+++|+++|++ ++.+++++||||++++|+..|++.+|+|++|.+|++..+. T Consensus 81 ~~---~~h~--~~~~~~~n~l-~l~~~Pn~~~t~~~f~~-l~~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v~~~~~~ 153 (368) T protein:vir:79 81 AA---AHHS--SAVYVKRNIL-VSTFIPHPLLSRATFER-LVLDWQVFGNAYLERRENVLGGTIRLDTPLAKYVRRGLDL 153 (368) T ss_pred hc---cccc--hhhhhhcchh-hhhcCCCcCCCHHHHHH-HHHHHhhcCCeEEEEEEcCCCCEEEEEEeCcccceeeccC Confidence 22 2110 0011123343 35558999999999976 6789999999999999999999999999999999876554 Q ss_pred CcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEE-ecCCcC Q lcl|Aclame:pro 141 QSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFML-KYGSNV 217 (409) Q Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~ 217 (409) + . |.+....++.+.|++++|||++.+++.++++|+||+.++..++.+..+++.+..+.+.|+ +++++ .++..+ T Consensus 154 ~--~--~~~~~~~~~~~~~~~~dIihir~~~~~~~~yGlsp~~~a~~si~l~~aa~~~~~~~~~NGa~~~gil~~~~~~l 229 (368) T protein:vir:79 154 N--T--YFFVQNWQQPYTFAAGSVFHLQEPDINQEVYGLPEYLSALNATWLNESATLFRRRYYKNGSHAGFILYMTDAAQ 229 (368) T ss_pred C--E--EEEEecCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCC Confidence 3 2 233445678899999999999999989999999999999999999999999987776654 45555 456789 Q ss_pred CHHHHHHHHHHHHHHhc--CCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc--C Q lcl|Aclame:pro 218 STEKRQQVLEDFKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN--T 288 (409) Q Consensus 218 ~~~~~~~~~~~~~~~~~--~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~--~ 288 (409) ++++.++++++|++..+ |.|+++|+ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|..++ + T Consensus 230 ~~e~~~~lk~~~~~~~G~~N~g~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~ 309 (368) T protein:vir:79 230 KQEDVDTLREAMKSAKGPGNFRNLFMYAPNGKKDGIQLLPVSEVAAKDEFWNIKNVTRDDQLAAHRVPPQLMGIIPNNTG 309 (368) T ss_pred CHHHHHHHHHHHHHhcCCcccCceeEecCCCCccceeEEEcCCCHHHHHHHHHHHHhHHHHHHHhCCCHHHccccCCCCC Confidence 99999999999998653 57788888 578999999999999999999999999999999999999997654 4 Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHH Q lcl|Aclame:pro 289 NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAV 355 (409) Q Consensus 289 ~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~ 355 (409) ++++.|++.+.|++++|.|+++.|| ++|.+|.. .+++|+...+++.|.+.++....+-. T Consensus 310 ~~sn~e~~~~~f~~~~l~Pl~~~ie-~ln~~l~~-------e~~rF~~~~l~~~D~~a~a~~~~rsa 368 (368) T protein:vir:79 310 GFGDVEKAAMVFARNEVKPLQDRLL-AINDWIGD-------EVVRFAPYALGGHDQPAAAPGGQRSA 368 (368) T ss_pred ccccHHHHHHHHHHHHHHHHHHHHH-HHHhccCc-------ceeeechhHhhcccccccCCcccccC Confidence 5899999999999999999999998 68887632 36889999999999998887433332 No 91 >protein:vir:267 Length: 348 # NCBI annotation: putative capsid portal protein # Family: family:all:196 # MgeID: mge:7 # MgeName: K139 # Cross-refs: genbank:acc:NP_536647;genbank:gi:17975125;genbank:GeneID:929081 Probab=100.00 E-value=2.8e-50 Score=292.24 Aligned_cols=321 Identities=11% Similarity=0.133 Sum_probs=226.2 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhc---cCceeEeec----- Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMA---SLPLKMYED----- 72 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia---~lp~~~~~~----- 72 (409) |.....-.-.... ......+.|+ + . +...+...+++.|+....+..+ .-|+....- T Consensus 1 ~~~~~~~~~~~~~-------~~~~~~~~~~--~--~-----p~~~~~~~~~~~~~~~~~~~~~~~~epp~~~~~La~l~~ 64 (348) T protein:vir:26 1 MTEQLIHSHTTDG-------TESKSVYSFD--P--N-----PEPVDTNSWMTRYCELFYNDFDDYWEPPISLKGLAEIAN 64 (348) T ss_pred CCccccchhhccc-------cCCceEEEec--C--C-----CeeecCcchHHHHHHHHhcCCCccccCCCCHHHHHHHHh Confidence 5543111100000 0000111111 0 0 0111222233333333322221 112211000 Q ss_pred ccc-----ccchhhhhh-hccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE Q lcl|Aclame:pro 73 YKV-----VNTEVSDLL-TVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY 146 (409) Q Consensus 73 ~~~-----~~~~~~~~L-~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~ 146 (409) ... .......++ .-.||+++|+.+|++. +.+++++||||++++|+..|++.+|+|++|.+|++..+.+ + T Consensus 65 ~n~~h~~~i~~k~N~l~~~~~Pn~~~t~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~v~~~~d~~----~ 139 (348) T protein:vir:26 65 ANGYHGSLLKARANYVAGRFMNGGGLPMYKMNSA-CWDYFGLGMSAFVKIRSYLKNVIALEPLPMVHMRKRKNGD----F 139 (348) T ss_pred hhhhhhhhHhhhhhHHhhcccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEecCceeEeeecCc----E Confidence 000 000001111 2369999999999776 4699999999999999999999999999999998876532 2 Q ss_pred EEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEE-ecCCcCCHHHHH Q lcl|Aclame:pro 147 YSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFML-KYGSNVSTEKRQ 223 (409) Q Consensus 147 ~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~ 223 (409) .+....|..+.|++++|+|++.+++.++++|+||+.++..++.+..+++.+..+++.++ +++++ ..+..+++++++ T Consensus 140 -~~~~~~g~~~~f~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~~~~ls~e~~~ 218 (348) T protein:vir:26 140 -VQLLRNNEQKVFKAKDVIFIPQYDPQQQIYGLPDYLGSIQSSLLNRDATLFRRRYYLNGAHMGFIFYATDPNLSEADEK 218 (348) T ss_pred -EEEEecCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHH Confidence 23334578889999999999999988999999999999999999999999987777665 45555 466789999999 Q ss_pred HHHHHHHHHhc--CCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc--ccCccccHH Q lcl|Aclame:pro 224 QVLEDFKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR--SNTNFAKNE 294 (409) Q Consensus 224 ~~~~~~~~~~~--~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~--~~~~~~~~e 294 (409) ++++.|++..+ |.++++|+ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|.. .++++++.| T Consensus 219 ~lk~~~~~~~G~~n~~~~~vl~~~g~~~Gi~~~pis~~~~d~qf~e~k~~t~~dIa~af~VPp~llGi~~~~~~~~sn~e 298 (348) T protein:vir:26 219 ALKEKIASSKGIGNFRSMFVNIPNGKEKGIQLIPVGDIATKDEFERIKNITAQDIFVGHRFPAGMGGMLPQQGANVPDPL 298 (348) T ss_pred HHHHHHHHhcCcccccceeEEcCCCCccceeEEEccCChhHHHHHHHHHhhHHHHHHHhCCCHHHccccCCCCCccccHH Confidence 99999998763 56678887 7789999999999999999999999999999999999999864 347899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhh-hhhhHHHH Q lcl|Aclame:pro 295 ELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSY-LRADSATQ 347 (409) Q Consensus 295 ~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l-~~~d~~~~ 347 (409) ++.+.|++++|.|+++.||++||++|..+ .+.+++||++.. +..+..+. T Consensus 299 ~~~~~f~~~~l~P~~~~ie~~ln~~l~~~----~~~~~~fdl~~~~e~~~~~a~ 348 (348) T protein:vir:26 299 KVSQVYDFYEVIPVCKRFMDAVNNDPEIP----DNLKLKFNLNPGVESANGSAV 348 (348) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhCCC----CccEEEEecCcccccchhhcC Confidence 99999999999999999999999998643 355678887643 33322222 No 92 >protein:vir:103971 Length: 376 # NCBI annotation: pbsx family phage portal protein # Family: family:all:196 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293752;genbank:gi:72537722;genbank:GeneID:3608098 Probab=100.00 E-value=9.7e-50 Score=289.28 Aligned_cols=313 Identities=14% Similarity=0.192 Sum_probs=235.4 Q ss_pred Ccchhhhhhhhh-hhhcc-cccCcccc--cccc---cc-------------cCCCCcc--ccch----hHHhhhHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKK-KLIDN-WIDQSASK--LYDF---SP-------------WKNKSFW--GVIN----NTLETNETIFSA 54 (409) Q Consensus 1 M~~~~~~~r~~~-~~~~~-~~~~~~~~--~~~~---~~-------------~~~~~~~--~v~~----~~~~~~~~v~~~ 54 (409) |.+-+-..|... +.... ........ .+.| .+ +....+. +++. +.+..++.+.+| T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fg~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~La~~~~~~~~h~s~ 105 (376) T protein:vir:10 26 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 105 (376) T ss_pred chhccCCCcccchhhhhHhhhccCcceeEEEEcCCceeccCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHHhhhh Confidence 877665544311 11100 00000000 1111 00 1110100 1222 223334444555 Q ss_pred HHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcce Q lcl|Aclame:pro 55 ITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVV 134 (409) Q Consensus 55 i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v 134 (409) |...++.+++ .-+||+++|+.+|++. +.+++++||+|++++|+..|++.+|+|++|.+| T Consensus 106 l~~k~n~l~~--------------------~~~Pnp~lT~~~f~~~-v~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v 164 (376) T protein:vir:10 106 LFFKANVLAS--------------------TFRPHRWLSRHAFERW-ALDFLTFGNGYLERRRNMVGGTLRLEPALAKYV 164 (376) T ss_pred HHHHhHHHHh--------------------ccCCCCCCCHHHHHHH-HHHHHhcCCeEEEEEECCCCCEEEEEEeCCcce Confidence 5544443322 2369999999999865 569999999999999999999999999999999 Q ss_pred EEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe Q lcl|Aclame:pro 135 EMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK 212 (409) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ 212 (409) ++..+.++ |.+....+..+.|+++||||++.+++.++++|+||+.++..++.+..+++.+..+++.|+ +++++. T Consensus 165 r~~~d~~~----~~~~~~~~~~~~~~~~eViHir~~~~~~~~yGls~~~~a~~si~l~~aa~~f~~~~f~NGa~pggIl~ 240 (376) T protein:vir:10 165 RRKADFNG----FVYVNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILY 240 (376) T ss_pred EEEeeCCe----EEEEEcCCeEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE Confidence 99877653 333445677889999999999999989999999999999999999999999987776664 455554 Q ss_pred -cCCcCCHHHHHHHHHHHHHHh--cCCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCC Q lcl|Aclame:pro 213 -YGSNVSTEKRQQVLEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 284 (409) Q Consensus 213 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~ 284 (409) ++..+++++.++++++|++.. +|.++++|+ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|. T Consensus 241 ~~d~~l~~e~~~~lr~~~~~~~G~~N~~~~~vl~~~g~~~Gi~~~pls~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi 320 (376) T protein:vir:10 241 MTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGI 320 (376) T ss_pred ecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEccCCHHHHHHHHHHHHhHHHHHHHhCCCHHHhcc Confidence 567899999999999999854 356677777 468999999999999999999999999999999999999998 Q ss_pred ccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHH Q lcl|Aclame:pro 285 RSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSAT 346 (409) Q Consensus 285 ~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~ 346 (409) .++ +++++.|++.+.|++++|.|+++.|| ++|.+|.. ..++|+...|++.|.++ T Consensus 321 ~~~~t~~~sn~eq~~~~f~~~~L~Pl~~~ie-eln~~L~~-------~~~~F~~~~Llr~d~ka 376 (376) T protein:vir:10 321 VPSNSGGFGTPDTAARVFGRNEIRPLQARFA-ELNDWLGE-------EVVRFDDYEIPPAPVAA 376 (376) T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHH-HHHhhccc-------cccccChhHhhcccccC Confidence 654 56899999999999999999999998 58887732 25899999999999887 No 93 >protein:vir:79207 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111036;genbank:gi:134288763;genbank:GeneID:4960726 Probab=100.00 E-value=7.3e-50 Score=289.98 Aligned_cols=313 Identities=13% Similarity=0.147 Sum_probs=229.6 Q ss_pred Ccchhhhhhhhhhh-hccccc-Ccccccccccc------cCCC---Ccc-----------ccch----hHHhhhHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKL-IDNWID-QSASKLYDFSP------WKNK---SFW-----------GVIN----NTLETNETIFSA 54 (409) Q Consensus 1 M~~~~~~~r~~~~~-~~~~~~-~~~~~~~~~~~------~~~~---~~~-----------~v~~----~~~~~~~~v~~~ 54 (409) |.+-+--.|....- .+.-.. ........|+. +.+. +|. +++. +.+..++.+.+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:79 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhHhhhhh Confidence 66532222211100 000000 00000111111 0110 011 1111 111122222333 Q ss_pred HHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcce Q lcl|Aclame:pro 55 ITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVV 134 (409) Q Consensus 55 i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v 134 (409) |...++.+++ .-+||+++|+.+|++ ++.+++++||||++++|+..|++.+|+|++|.++ T Consensus 81 l~~k~n~l~~--------------------~~~Pnp~~t~~~f~~-~v~d~ll~Gnay~~~~r~~~G~~~~L~~l~~~~v 139 (351) T protein:vir:79 81 LFFKANVLAS--------------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYV 139 (351) T ss_pred hhhhhhHHhh--------------------cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEeCCcce Confidence 3222222211 247999999999975 6679999999999999999999999999999999 Q ss_pred EEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe Q lcl|Aclame:pro 135 EMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK 212 (409) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ 212 (409) ++..+.++ |.+....|+.+.|+++||||++.+++.++++|+||+.++..++.+..+++.+..+++.|+ +++++. T Consensus 140 ~~~~~~~~----~~~~~~~g~~~~~~~~eIihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~il~ 215 (351) T protein:vir:79 140 RRKADFSG----FVYVNGWQERHEFEPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILY 215 (351) T ss_pred eeeecCCe----EEEEecCceEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE Confidence 98877664 344556778899999999999999999999999999999999999999999987777665 455554 Q ss_pred -cCCcCCHHHHHHHHHHHHHHh--cCCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCC Q lcl|Aclame:pro 213 -YGSNVSTEKRQQVLEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 284 (409) Q Consensus 213 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~ 284 (409) ++..+++++.++++++|++.. +|.++++++ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|. T Consensus 216 ~~~~~ls~e~~~~lk~~~~~~~G~~N~~~~~v~~~~g~~~gi~~~pl~~~~~d~ef~e~k~~s~~eI~~a~~VPp~llGi 295 (351) T protein:vir:79 216 MTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGI 295 (351) T ss_pred ecCCCCCHHHHHHHHHHHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcc Confidence 567899999999999998864 356778777 578999999999999999999999999999999999999998 Q ss_pred ccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHH Q lcl|Aclame:pro 285 RSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSAT 346 (409) Q Consensus 285 ~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~ 346 (409) .++ +++++.|++.+.|++++|.|+++.||+ +|.+|. ...++|+..++++.|.++ T Consensus 296 ~~~~t~~~~n~e~~~~~f~~~~l~Pl~~~ie~-ln~~lg-------~~~~~F~~~~llr~d~~a 351 (351) T protein:vir:79 296 VPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLG-------DEVVTFDDYEIPPAPVAA 351 (351) T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcC-------cceeeeChhhhccccccC Confidence 654 568999999999999999999999985 787652 235899999999999887 No 94 >protein:vir:100328 Length: 346 # NCBI annotation: capsid portal protein Q # Family: family:all:196 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655469;genbank:gi:109289937;genbank:GeneID:4157371 Probab=100.00 E-value=8.3e-50 Score=289.67 Aligned_cols=325 Identities=14% Similarity=0.180 Sum_probs=234.4 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccc---cCCC----Cccccch--hHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSP---WKNK----SFWGVIN--NTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~v~~--~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |.+.+- |.+.. .....+......+.|+. ..+. +|..+.. ..+.+-|.-+.. +|+.+...+.+- . T Consensus 1 m~~~~~--~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~---la~l~~~~~~h~-~ 73 (346) T protein:vir:10 1 MKKQLR--KNLTQ-NDRLQPQAQTEIFSFGDPIPVLDRADILNYLECSAMYEKWYNPPMSFDG---LAKSLRSSTHHE-S 73 (346) T ss_pred CCcccC--CCCCc-ccccccccCeEEEecCCcceecCchhHHHHHHHhhcCCceEecCCCHHH---HHHHHHhhhhcc-h Confidence 777522 11110 00111111111111111 1000 0000000 001111111222 333332233221 0 Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc Q lcl|Aclame:pro 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) Q Consensus 72 ~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~ 151 (409) .-..+.+.+..++ .+||+++|+++|++ ++.+++++||||++++|+..|++.+|+|++|.+|++..+.++. .|++.. T Consensus 74 ~i~~k~n~l~~l~-~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~i~r~~~G~~~~L~pl~~~~v~~~~~~~~~--~~~~~~ 149 (346) T protein:vir:10 74 AIITKANILLSTC-EVDSRYLSRRDLSS-FVKDYLVFGNAYFEVVRNRLGQVQRIESPLAKYVRKGLEAGQF--YYVPQR 149 (346) T ss_pred hhhhhhhhHHHHH-hCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCcEEEEEEecCCceEEEEcCCeE--EEEEEc Confidence 0112334455544 47999999999987 5678999999999999999999999999999999987776543 455566 Q ss_pred CCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHHHHH Q lcl|Aclame:pro 152 ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQVLED 228 (409) Q Consensus 152 ~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 228 (409) .+|+.+.|++++|||+|.+++.++.+|+||+..+..++.+..+++.+..+.+.++ +++++. ++..+++++.++++++ T Consensus 150 ~~g~~~~~~~~dIih~r~~~~~~~~~G~~~~~~a~~si~l~~~a~~~~~~~~~NG~~~~~il~~~d~~l~~e~~~~i~~~ 229 (346) T protein:vir:10 150 FDHQEHEFAKGSIYHLLEPDINQDIYGLPQYLSALQSAWLNESATLFRRKYFLNGAHAGFVFYMSDASQKQEDVENIRQQ 229 (346) T ss_pred cCCeEEEEecccEEEecCCCCCCCeeeccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEeCCCCCCHHHHHHHHHH Confidence 7788899999999999999888999999999999999999999999987766554 455554 5678999999999999 Q ss_pred HHHHhc--CCCceeecC-----CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc--CccccHHHHHHH Q lcl|Aclame:pro 229 FKQYYE--ENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN--TNFAKNEELNRF 299 (409) Q Consensus 229 ~~~~~~--~~~~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~--~~~~~~e~~~~~ 299 (409) |++.++ |.++++|+. .|++++|++.++.|+||+|.+++++++||++|||||.++|..++ +++++.|++.+. T Consensus 230 ~~~~~g~~n~~~~~vl~~~~~~~gi~~~pis~~~~d~qf~e~k~~~~~~I~~af~VPp~llG~~~~~~~~~s~~e~~~~~ 309 (346) T protein:vir:10 230 LKQSKGVGNFKNLFVHAPNGKKDGIQIIPIADVSAKDEFFNIKNVSRDDVLAAHRVPPQLMGIIPNNTGGFGNVADAAEV 309 (346) T ss_pred HHHhcCccccCceeEecCCCCccceeEEecCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcccHHHHHHH Confidence 998774 567788874 37889999999999999999999999999999999999987654 468999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhH Q lcl|Aclame:pro 300 YLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADS 344 (409) Q Consensus 300 ~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~ 344 (409) |++++|.|+++.||+ +|.+|.. .+++|+..+|++.|. T Consensus 310 f~~~~l~P~~~~iee-~n~~L~~-------e~i~F~~~~ll~~~~ 346 (346) T protein:vir:10 310 FFITEIEPLQERLKE-FNQWLGQ-------EVIKFKPSKLLQRTQ 346 (346) T ss_pred HHHHHHHHHHHHHHH-HHhhccc-------ceeeechhhhcccCC Confidence 999999999999985 7777642 368999999999887 No 95 >protein:vir:78191 Length: 351 # NCBI annotation: gp5, phage portal protein, pbsx family # Family: family:all:196 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111155;genbank:gi:134288732;genbank:GeneID:4960651 Probab=100.00 E-value=1.4e-49 Score=288.41 Aligned_cols=313 Identities=13% Similarity=0.147 Sum_probs=228.6 Q ss_pred Ccchhhhhhhhhhh-hccccc-Ccccccccccc------cCCC---Ccc-----------ccchh----HHhhhHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKL-IDNWID-QSASKLYDFSP------WKNK---SFW-----------GVINN----TLETNETIFSA 54 (409) Q Consensus 1 M~~~~~~~r~~~~~-~~~~~~-~~~~~~~~~~~------~~~~---~~~-----------~v~~~----~~~~~~~v~~~ 54 (409) |.+-+--.|....- .+.-.. ........|+. +.+. +|. +++.. .+..++...+| T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~~~~~h~~~ 80 (351) T protein:vir:78 1 MSKRRSRAPRTFAAAPNPSAGSAAPARAEVFTFDDPTPVMNRAEILDYVECWSNGEWFEPPVSFAGLAKSFRASTHHSSA 80 (351) T ss_pred CCCCCCCCCCCCCCCCchhhhhcccceeEEEEcCCceeecCcchhhhhhhhhccCceecCCCCHHHHHHHHhhhHhhhhh Confidence 66532222211100 000000 00000011111 0110 011 11111 11122223333 Q ss_pred HHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcce Q lcl|Aclame:pro 55 ITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVV 134 (409) Q Consensus 55 i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v 134 (409) |...++.+++ .-+||+++|+++|++ ++.+++++||+|++++|+..|++.+|+|+++.++ T Consensus 81 l~~k~n~l~~--------------------~~~Pn~~~t~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v 139 (351) T protein:vir:78 81 LFFKANVLAS--------------------TFRPHRWLSRHAFER-WALDFLTFGNGYLERRRNMVGGTLRLEPALAKYV 139 (351) T ss_pred hhhhhhHHhh--------------------cccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEecCcce Confidence 3322222211 236999999999975 5579999999999999999999999999999999 Q ss_pred EEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe Q lcl|Aclame:pro 135 EMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK 212 (409) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ 212 (409) ++..+.++ |.+....|+.+.|++++|||++.+++.++++|+||+..+..++.+..++..+..+++.|+ +++++. T Consensus 140 ~~~~~~~~----~~~~~~~~~~~~~~~~eVihir~~~~~~~~yGl~~~~~a~~si~l~~~a~~~~~~~f~NGa~pggIl~ 215 (351) T protein:vir:78 140 RRKADFSG----FVYVNGWQERHEFAPDSVFQLVRPDINQEVYGLPEYLSSLHSAWLNESSTLFRRKYYENGSHAGFILY 215 (351) T ss_pred EEeeeCCe----EEEEecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEE Confidence 99877664 334445678899999999999999999999999999999999999999999887776665 455554 Q ss_pred -cCCcCCHHHHHHHHHHHHHHh--cCCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCC Q lcl|Aclame:pro 213 -YGSNVSTEKRQQVLEDFKQYY--EENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 284 (409) Q Consensus 213 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~ 284 (409) .++.+++++.++++++|++.. +|.++++|+ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|. T Consensus 216 ~~~~~ls~e~~~~lr~~~~~~~G~~N~~~~~v~~~~g~~~g~k~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi 295 (351) T protein:vir:78 216 MTDAAQKQDDVDNMRDALKNAKGPGNFRNVFMYAPGGKKDGIQLIPVSEVAAKDEFFNIKNVTRDDLLAAHRVPPQLLGI 295 (351) T ss_pred ecCCCCCHHHHHHHHHHHHHhcCcccccceeeecCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcc Confidence 567899999999999998754 356778777 468999999999999999999999999999999999999997 Q ss_pred ccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHH Q lcl|Aclame:pro 285 RSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSAT 346 (409) Q Consensus 285 ~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~ 346 (409) .++ +++++.|++.+.|++++|.|+++.||+ +|.+|. ..+++|+..+|++.|.++ T Consensus 296 ~~~~t~~~sn~e~~~~~f~~~~l~P~~~~iee-~n~~l~-------~~~~~F~~~~Llr~d~ka 351 (351) T protein:vir:78 296 VPSNSGGFGTPDTAARVFGRNEIRPLQARFAE-LNDWLG-------DEVVRFDDYEIPPAPVAA 351 (351) T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH-HHhhcC-------ccceecChhhhccccccC Confidence 654 568999999999999999999999995 776653 225899999999999888 No 96 >protein:vir:78749 Length: 337 # NCBI annotation: putative portal protein # Family: family:all:196 # MgeID: mge:1857 # MgeName: phiO18P # Cross-refs: genbank:acc:YP_001285643;genbank:gi:148727149;genbank:GeneID:5220095 Probab=100.00 E-value=6e-49 Score=284.97 Aligned_cols=315 Identities=13% Similarity=0.118 Sum_probs=227.7 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhh---ccCceeEeeccc--c Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSM---ASLPLKMYEDYK--V 75 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i---a~lp~~~~~~~~--~ 75 (409) |.+.+- +-. .. ........|+...+ .+| +...++..|+...-+.. -..|+....-.+ . T Consensus 1 m~~~~~------~~~-~~--~~~~~~~~~~~~~p---~~~-----~~~~~~~~~~~~~~~~~~~~~~pP~~~~~La~l~~ 63 (337) T protein:vir:78 1 MTKRQQ------QPA-QA--AASSPRPSVVFSMP---EAI-----DPTAWMTDYTGVFYNPYGEYYQPPIDRKGLAKVAR 63 (337) T ss_pred CCCccc------Ccc-cc--cccCceeEEEecCc---ccc-----cCcchhHhhhhhhhccCcceecCCCCHHHHHHHhh Confidence 666311 100 01 11111111221111 111 12222333333322222 233443321000 0 Q ss_pred ccchhhhhhhccccCCCCHH----HHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSF----DFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~----~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~ 151 (409) ........|..+||..++.+ ++++.++.|++++||||++++|+..|++++|+|++|.+|++..+. .. +| .. T Consensus 64 ~~~~h~~~L~~k~N~~~~~f~~~~~~~~~~~~d~ll~GNay~~~~rn~~G~~~~L~pl~~~~v~~~~d~--~~-~~--~~ 138 (337) T protein:vir:78 64 ANAHHGAILMARRNMVAGRFTNQRATITAFVHNYLQFGDGGLLKLRNSFGQVVGLHPLSSVYLRRREDG--CF-VY--LQ 138 (337) T ss_pred cchhhhhHHHhhhccccccCcCcHHHHHHHHHHHHhhCCeEEEEEECCCCcEEEEEEeCCceeEeeeCC--eE-EE--EE Confidence 11122446778999776644 688999999999999999999999999999999999999876543 22 22 23 Q ss_pred CCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHHHHH Q lcl|Aclame:pro 152 ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQVLED 228 (409) Q Consensus 152 ~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 228 (409) ..+..+.|+++||+|+|.+++.++++|+||+.++..++.++.+++.+..+++.|+ +++++. +++.+++++.+++++. T Consensus 139 ~~~~~~~~~~~eIiHik~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~p~~il~~~~~~l~~e~~~~lk~~ 218 (337) T protein:vir:78 139 QGKPNLIYRPDDVIWLAQYDPEQQVYGMPDYLGGLQSALLNQDATLFRRRYFLNGAHMGFIFYATDPNMDDDTEEEMKEM 218 (337) T ss_pred cCCceEEECCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeEEcCCCCCCHHHHHHHHHH Confidence 4567789999999999999988999999999999999999999999987777664 455655 5668999999999999 Q ss_pred HHHHhc--CCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc---cCccccHHHHHH Q lcl|Aclame:pro 229 FKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS---NTNFAKNEELNR 298 (409) Q Consensus 229 ~~~~~~--~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~---~~~~~~~e~~~~ 298 (409) |++..+ |.++++++ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|... .+++++.|++.+ T Consensus 219 ~~~~~G~~n~~~~~v~~~~g~~~Gi~~~pis~~~~d~qfle~k~~s~~eIa~a~~VPp~llGi~~~~~~~~~~n~e~~~~ 298 (337) T protein:vir:78 219 IANSKGVGNFRSMFVNIPDGKPDGIKLIPVGDIATKDEFAAIKGITAQDVLTAHRYPPALAGIIPTNGGGGLGDPEKYDA 298 (337) T ss_pred HHHhcCcccccceEEEcCCCCccceeEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHcccccCCCcCccccHHHHHH Confidence 987653 45667776 57899999999999999999999999999999999999998643 457889999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhh Q lcl|Aclame:pro 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYL 340 (409) Q Consensus 299 ~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~ 340 (409) .|++++|.|+++.||+++|.+|++... ...++++...++ T Consensus 299 ~f~~~~L~P~~~~ie~~~n~~ll~~~~---~~~f~~~~~~~~ 337 (337) T protein:vir:78 299 TYARNEVLPLCELVQDAINSAGLPRAL---WVTFRETIGAAV 337 (337) T ss_pred HHHHHHHHHHHHHHHHHHhhhcCChhh---ceeccccccccC Confidence 999999999999999999999887532 234666666666 No 97 >protein:vir:6058 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:126 # MgeName: WPhi # Cross-refs: genbank:acc:NP_878199;genbank:gi:33438898;genbank:GeneID:1457733 Probab=100.00 E-value=2.1e-48 Score=281.99 Aligned_cols=322 Identities=14% Similarity=0.157 Sum_probs=226.9 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccc---cC-CC---Cccccchh-HHhhhHHHHHHHHHHH--HhhccCceeEe Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSP---WK-NK---SFWGVINN-TLETNETIFSAITKLS--NSMASLPLKMY 70 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~-~~---~~~~v~~~-~~~~~~~v~~~i~~ia--~~ia~lp~~~~ 70 (409) |.+-+--.+. ...............+.|+. .. +. +|..+..+ .+.+-|.-+.++..+. +...+.+++.+ T Consensus 1 m~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~~k 79 (344) T protein:vir:60 1 MSKKKGKTLQ-PAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPISFTGLAKSLRAAVHHSSPIYVK 79 (344) T ss_pred CCcccCCCCC-chHHhhcCCcCcEEEEEcCCceeecCCcchhHHHHhhhcCccccCCCCHHHHHHHHHhhhhhccchhhh Confidence 7664321111 11111111111111111111 10 00 11111111 1222122222222111 11112222221 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEE Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIH 150 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~ 150 (409) +. .+.. .-+||+++|+++| +.++.+++++||||++++|+..|++++|+|++|.+|++..+.+. |.+. T Consensus 80 ~n------~l~~--~~~Pn~~~t~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~~l~~~~vr~~~~~~~----~~~v 146 (344) T protein:vir:60 80 RN------ILAS--TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV----YWWV 146 (344) T ss_pred hh------HHHh--hccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCcceEEEeecCCe----EEEE Confidence 11 1111 2379999999999 57889999999999999999999999999999999998776552 3344 Q ss_pred cCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHHHH Q lcl|Aclame:pro 151 AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQVLE 227 (409) Q Consensus 151 ~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 227 (409) ...|..+.|++++|||++.+++.++++|+||+..+..++.+..+++.+..+++.|+ +++++. ++..+++++++++++ T Consensus 147 ~~~~~~~~~~~~eIiHir~~~~~~~~yGlsp~~~a~~si~l~~~a~~~~~~~f~NG~~pg~il~~~~~~ls~e~~~~ik~ 226 (344) T protein:vir:60 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) T ss_pred ccCCeEEEEcCccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHHHH Confidence 56678889999999999999888999999999999999999999999987777665 556665 567899999999999 Q ss_pred HHHHHhc-CCCceeec------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc--CccccHHHHHH Q lcl|Aclame:pro 228 DFKQYYE-ENGGILFQ------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN--TNFAKNEELNR 298 (409) Q Consensus 228 ~~~~~~~-~~~~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~--~~~~~~e~~~~ 298 (409) +|++.++ ++++.+++ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|..++ +++++.|++.+ T Consensus 227 ~~~~~~g~~~~r~~~l~~p~g~~~g~~~~pis~~~~d~qf~e~k~~~~~eIa~af~VPp~llGi~~~~t~~~~n~e~~~~ 306 (344) T protein:vir:60 227 NMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) T ss_pred HHHHhcCCCCCcceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHH Confidence 9998774 56777776 478999999999999999999999999999999999999987653 46899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhH Q lcl|Aclame:pro 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADS 344 (409) Q Consensus 299 ~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~ 344 (409) .|++++|.|+++.|| +||.+|.. ..++|+.-.+...|. T Consensus 307 ~f~~~~L~Pl~~~~e-~ln~~lg~-------~~i~F~~~~l~~~d~ 344 (344) T protein:vir:60 307 VFVRNELIPLQDRIR-EINGWLGQ-------EVIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHHHHHHHHHHH-HHHHhcCC-------cccccCccccCCCCC Confidence 999999999999998 58988742 235666666666665 No 98 >protein:vir:3743 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:79 # MgeName: HP1 # Cross-refs: genbank:acc:NP_043484;genbank:gi:9628619;genbank:GeneID:1261113 Probab=100.00 E-value=5.7e-48 Score=279.59 Aligned_cols=322 Identities=13% Similarity=0.141 Sum_probs=226.7 Q ss_pred Ccchhhhhhhhh-hhhcccccCcccccccc---cccCCCCccccc---hhHHhhhHHHHHHHHHH--HHhhccCceeEee Q lcl|Aclame:pro 1 MAKENIVTRIKK-KLIDNWIDQSASKLYDF---SPWKNKSFWGVI---NNTLETNETIFSAITKL--SNSMASLPLKMYE 71 (409) Q Consensus 1 M~~~~~~~r~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~---~~~~~~~~~v~~~i~~i--a~~ia~lp~~~~~ 71 (409) |++..- +-.. ....... ....+.+ .+....+|..+. ...+.+-|.-+.++..+ |+..-+-++.. T Consensus 1 ~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~~~~~~~~h~~~i~~-- 73 (345) T protein:vir:37 1 MKTNVK--TDNKKGIVIAPI---NDRTFSLSEITASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHS-- 73 (345) T ss_pred CCcccc--ccchhhhcCCCc---eEEEeecCCcccchhhcccceeeecCCccccCCCCHHHHHHHhhcchhhcchhhh-- Confidence 776411 1100 0000000 0000000 000001122211 11123322222222211 11111111111 Q ss_pred ccccccchhhhh-hhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE-EEE Q lcl|Aclame:pro 72 DYKVVNTEVSDL-LTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY-YSI 149 (409) Q Consensus 72 ~~~~~~~~~~~~-L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~-~~~ 149 (409) ....+ ..-+||++||+.+|++ ++.+++++||||++++|+..|++++|+|++|.++++..+.+..... +.. T Consensus 74 -------k~n~l~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~ 145 (345) T protein:vir:37 74 -------RANMVSATYEGGKALSKMEMRA-LCLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVHKDGGYSYLMKKSL 145 (345) T ss_pred -------hhhHHhhccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCCEEEEEEecCceeEEeecCCeeEEEeeee Confidence 11111 2347999999999975 5579999999999999999999999999999999987665543222 222 Q ss_pred EcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHHH Q lcl|Aclame:pro 150 HAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQVL 226 (409) Q Consensus 150 ~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~ 226 (409) ....|+...|+++||+|++.+++.++++|+||+..+..++.+..+++++..+.+.|+ +++++. ++..+++++.++++ T Consensus 146 ~~~~g~~~~~~~~eViHir~~~~~~~~~Gl~~~~~a~~si~l~~~a~~~~~~~f~NGa~~~~Il~~t~~~l~~e~~~~lk 225 (345) T protein:vir:37 146 YDTAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIA 225 (345) T ss_pred eccCceEEEEccccEEEEcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCCCCCHHHHHHHH Confidence 344578889999999999999888999999999999999999999999987777665 555664 56789999999999 Q ss_pred HHHHHHhc-CCC-ceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHH Q lcl|Aclame:pro 227 EDFKQYYE-ENG-GILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELN 297 (409) Q Consensus 227 ~~~~~~~~-~~~-~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~ 297 (409) ++|++.++ +++ +++++ ++|++|+|++.++.|+||++.+++++++||++|||||.++|..+ ++++++.|++. T Consensus 226 ~~~~~~~g~~n~~~~~i~~~~g~~~G~~~~pl~~~~~d~qf~e~k~~~~~dI~~a~~VPp~liGi~~~~t~~~s~~e~~~ 305 (345) T protein:vir:37 226 RKISESKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYR 305 (345) T ss_pred HHHHHhcCccccCceeEecCCCCccceeEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhccccCCCCCcccHHHHH Confidence 99999874 233 34444 46799999999999999999999999999999999999998764 45689999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhh Q lcl|Aclame:pro 298 RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLR 341 (409) Q Consensus 298 ~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~ 341 (409) +.|++++|.|+++.||+++|+.+ +...+.+++||..+|++ T Consensus 306 ~~f~~~~l~P~~~~ie~~ln~~~----e~~~~~~i~F~~~~l~k 345 (345) T protein:vir:37 306 EVYHYDEVMPLQEIIAETINQDP----EIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHHHHHHHHHhhhhh----ccCCcceEEECchhhcC Confidence 99999999999999999999742 23457889999999888 No 99 >protein:vir:98567 Length: 340 # NCBI annotation: gp1 # Family: family:all:196 # MgeID: mge:1533 # MgeName: PSP3 # Cross-refs: genbank:acc:NP_958056;genbank:gi:41057353;genbank:GeneID:2744238 Probab=100.00 E-value=2.7e-48 Score=281.39 Aligned_cols=318 Identities=14% Similarity=0.217 Sum_probs=227.6 Q ss_pred CcchhhhhhhhhhhhcccccCccccccccc---ccC-CC---Cccccc-hhHHhhhHHHHHHHHHHHHhhc--cCceeEe Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFS---PWK-NK---SFWGVI-NNTLETNETIFSAITKLSNSMA--SLPLKMY 70 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~-~~---~~~~v~-~~~~~~~~~v~~~i~~ia~~ia--~lp~~~~ 70 (409) |.+-+ .|...+.... .......+.|+ +.. +. +|..+. ...|.+.|.-+.++..+.++-+ +.+++.+ T Consensus 1 m~~~~--~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~la~l~~a~~~h~s~i~~k 76 (340) T protein:vir:98 1 MSKRK--PRKAVAMTAS--APQKMEAFTFGEPVPVLDKRDILDYVECISNGKWYEPPVSFSGLAKSLRSAVHHSSPIYVK 76 (340) T ss_pred CCCCC--CCcccccccc--CccceeEEEcCCceeecCcchhhhhhhhhhcCceecCCCCHHHHHHHHHhccccchhhhhh Confidence 87643 2221111000 00011111111 111 10 111111 1224444444444333322221 1112111 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEE Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIH 150 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~ 150 (409) + ..+.. .-+||+++|+++|++ ++.+++++||||++++|+..|++++|+|+++.++++..+.+ . +|.+ T Consensus 77 ~------n~l~~--~~~Pn~~lt~~~f~~-~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~~~~--~-~~~~- 143 (340) T protein:vir:98 77 R------NVLAS--TYIPHPLLSRQDFSR-FALDYLVFGNAFLEQRHSVTGQLIKLLTSPAKYTRRGVDDS--V-FWFV- 143 (340) T ss_pred h------hHHhh--ccCCCCCCCHHHHHH-HHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceEEEcccCc--E-EEEE- Confidence 0 00111 237999999999975 55799999999999999999999999999999988765433 2 3333 Q ss_pred cCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEE-ecCCcCCHHHHHHHHH Q lcl|Aclame:pro 151 AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFML-KYGSNVSTEKRQQVLE 227 (409) Q Consensus 151 ~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~ 227 (409) ...|+.+.|+++||+|++.+++.++++|+||+..+..++.+..+++.+..+++.|+ +++++ .++..+++++.+++++ T Consensus 144 ~~~~~~~~~~~~eViHir~~~~~~~~~Gls~~~~a~~si~l~~aa~~~~~~~f~NGa~pg~il~~~~~~ls~e~~~~lk~ 223 (340) T protein:vir:98 144 ENFTQPHEFAPDTVFHLLEPDINQEIYGLPEYLSALNSAWLNESATLFRRKYYQNGAHAGYIMYVTDPAQSATDVESLRD 223 (340) T ss_pred ecCCeEEEEccccEEEEcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHH Confidence 45677889999999999999888999999999999999999999999987777664 45555 4567899999999999 Q ss_pred HHHHHhc--CCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHHH Q lcl|Aclame:pro 228 DFKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNR 298 (409) Q Consensus 228 ~~~~~~~--~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~~ 298 (409) +|++..+ |.++++|+ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|..+ ++++++.|++.+ T Consensus 224 ~~~~~~G~~n~~~~~vl~~~g~~~g~~~~pls~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn~e~~~~ 303 (340) T protein:vir:98 224 AMRNSKGLGNFKNLFFYSPNGKPDGIKIVPLSEVATKDDFFNIKKASAADLMDAHRVPFQLMGGKPENIGSLGDVEKVAK 303 (340) T ss_pred HHHHhcCccccCceeEecCCCCccceEEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhcccCCCCCccccHHHHHH Confidence 9998542 45678877 57899999999999999999999999999999999999999764 456899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhh Q lcl|Aclame:pro 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) Q Consensus 299 ~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d 343 (409) .|++++|.|+++.||+ +|.+|..+ .++|+...+++.| T Consensus 304 ~f~~~~l~Pl~~~iee-~n~~L~~e-------~~rF~~~~l~~~d 340 (340) T protein:vir:98 304 VFVRNELSPLQDRFRE-VNDWLGME-------VIRFKEYTLDNPE 340 (340) T ss_pred HHHHHHHHHHHHHHHH-HHhccccc-------ccccCccccccCC Confidence 9999999999999995 88887532 3778888888888 No 100 >protein:vir:3780 Length: 345 # NCBI annotation: orf15 # Family: family:all:196 # MgeID: mge:328 # MgeName: HP2 # Cross-refs: genbank:acc:NP_536820;genbank:gi:17981829;genbank:GeneID:929208 Probab=100.00 E-value=7e-48 Score=279.10 Aligned_cols=324 Identities=13% Similarity=0.133 Sum_probs=231.5 Q ss_pred CcchhhhhhhhhhhhcccccCccccccccc---ccCCCCccccc---hhHHhhhHHHHHHHHHHHHhh--ccCceeEeec Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFS---PWKNKSFWGVI---NNTLETNETIFSAITKLSNSM--ASLPLKMYED 72 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~---~~~~~~~~~v~~~i~~ia~~i--a~lp~~~~~~ 72 (409) |+... .|-..... . ........+.|+ +....+|..+. ...+.+-|.-+.++..+.++- .+-.+...+ T Consensus 1 ~~~~~--~~~~~~~~-~-~~~~~~~~f~~~~~~~~~~~~y~~~~~~~~~~~~epp~~~~~la~l~~~~~~h~~~i~~k~- 75 (345) T protein:vir:37 1 MKTNV--KTDNKKGI-V-IAPINDRTFSLNEISASPALDYVGIGFDENYNCYLPPVNRHALAKLPHQNAQHGGILHSRA- 75 (345) T ss_pred CCCCc--cccchhhc-c-cCcceeEEeecCCcccccchhhhhhhhcCCccccCCCCCHHHHHHHhhcccccccceeeec- Confidence 66631 11100000 0 000001111111 11111233222 112444444443333332211 111222111 Q ss_pred cccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE-EEEEc Q lcl|Aclame:pro 73 YKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY-YSIHA 151 (409) Q Consensus 73 ~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~-~~~~~ 151 (409) .-+. ..-+||+++|+.+|++. +.+++++||||++++|+..|++.+|+|+++.+|++..+.+....+ +.... T Consensus 76 -----n~l~--~~~~Pn~~lt~~~f~~~-~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~vr~~~d~~~~~~~~~~~~~ 147 (345) T protein:vir:37 76 -----NMVS--SLYEGGKALSRMDMRAL-CLNLIQFGDVGLLKVRNGFGQVVRLVPLSSLYLRVRKDGGYSYLMKKSLYD 147 (345) T ss_pred -----hHHH--hhccCCCCCCHHHHHHH-HHHHHhcCCeEEEEEEcCCCcEEEEEEEcCceeEEEEeCCeeEEEEEeEec Confidence 1111 23479999999999865 579999999999999999999999999999999988776553322 23345 Q ss_pred CCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHHHHH Q lcl|Aclame:pro 152 ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQVLED 228 (409) Q Consensus 152 ~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 228 (409) ..|..+.|+++||||++.+++.++.+|+||+..+..++.+..+++++..+.+.|+ +++++. ++..+++++.++++++ T Consensus 148 ~~g~~~~~~~~dVihir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NG~~p~~Il~~~d~~l~~e~~~~lk~~ 227 (345) T protein:vir:37 148 TAQEIYRYDAKDIIFIKLYDPMQQVYGSPDYVGGIQSALLNSDATVFRRRYFSNGAHMGFILYSTDPDLTEEMEEEIARK 227 (345) T ss_pred CCceEEEEccccEEEecCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcceEEEecCCCCCHHHHHHHHHH Confidence 5678889999999999999988999999999999999999999999987777665 455554 5678999999999999 Q ss_pred HHHHhc--CCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHHHH Q lcl|Aclame:pro 229 FKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNRF 299 (409) Q Consensus 229 ~~~~~~--~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~~~ 299 (409) |++..+ |.++++++ ++|++|+|++.++.|+||.|.+++++++||++|||||.++|..+ ++++++.|++.+. T Consensus 228 ~~~~~g~~n~~~~~i~~p~g~~~G~~~~pls~~~~d~qf~e~k~~~~~dIa~a~~VPp~llGi~~~~~~~~~~~e~~~~~ 307 (345) T protein:vir:37 228 ISESKGVGNFRSMFVNIANGHPDGLKVIPIGDTGTKDEFANIKNISAQDVLTAHRFPAGLSGIIPTNTGGLGDPLKYREV 307 (345) T ss_pred HHHhcCcccccceEEEcCCCcccceEEEEccCChhHHHHHHHHHHhHHHHHHHhCCCHHHhCccCCCCCCcccHHHHHHH Confidence 998653 44566666 57999999999999999999999999999999999999998754 4678999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhh Q lcl|Aclame:pro 300 YLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLR 341 (409) Q Consensus 300 ~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~ 341 (409) |++++|.|+++.|++++|+.+ +...+.+++|+...|.+ T Consensus 308 f~~~~l~P~~~~ie~~ln~~~----~~~~~~~i~F~~~~L~~ 345 (345) T protein:vir:37 308 YHYDEVMPLQEIIAETINQDP----EIKNLLKIKFREQNFAK 345 (345) T ss_pred HHHHHHHHHHHHHHHHhhhhc----cCCCcceEEecchhhcC Confidence 999999999999999999743 22346778998877777 No 101 >protein:vir:1150 Length: 350 # NCBI annotation: predicted capsid packaging protein # Family: family:all:196 # MgeID: mge:24 # MgeName: phi CTX # Cross-refs: genbank:acc:NP_490599;genbank:gi:17313219;genbank:GeneID:927315 Probab=100.00 E-value=1.1e-48 Score=283.55 Aligned_cols=322 Identities=11% Similarity=0.130 Sum_probs=222.1 Q ss_pred Ccchhhhhhhhhh-hhccc----ccCcccccccccccCCCCcccc-chhHHhhhHHHHHHHH---------HHHHhhccC Q lcl|Aclame:pro 1 MAKENIVTRIKKK-LIDNW----IDQSASKLYDFSPWKNKSFWGV-INNTLETNETIFSAIT---------KLSNSMASL 65 (409) Q Consensus 1 M~~~~~~~r~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~i~---------~ia~~ia~l 65 (409) |.+-+-..+...+ ..... ..........|+...+ .+| +.+.++....++.|-+ -+|+.+... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~v~~~~~~~~y~~~~~~~~~~~pp~~~~~la~~~~~~ 77 (350) T protein:vir:11 1 MSKRRSHRRQQPVTVQSAQEGEFIPRQGGRAEAFTFGDP---MPVLDGRGILDYLECWPNGRWYEPPLSMEGLAKSVGSS 77 (350) T ss_pred CCccccCCCcCccccCCcchhhhccccccceEEEEeCCc---eeecCcchhhHHHHHhhcCccccCCCCHHHHHHHHhhh Confidence 6664222211110 00000 0111111112221111 011 1111111111111111 112222111 Q ss_pred ceeEeeccccccchhhhhh-hccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce Q lcl|Aclame:pro 66 PLKMYEDYKVVNTEVSDLL-TVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE 144 (409) Q Consensus 66 p~~~~~~~~~~~~~~~~~L-~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~ 144 (409) +.+- .........+. .-+||+++|+++|++ ++.+++++||||++++|+..|++.+|+|++|.++++..+.+. T Consensus 78 ~~h~----~~l~~k~n~l~~~~~Pn~~~t~~~f~~-~v~d~ll~Gnay~~~~rn~~G~~~~L~~l~~~~vr~~~~~~~-- 150 (350) T protein:vir:11 78 VYLQ----SGLKFKRNMLAKTFIPHRLLSRATFEQ-FSLDWLTFGSAYLEQPRSRLGTRMPLQAPLAKYMRRGTDLET-- 150 (350) T ss_pred hhhc----cchhhhhhhhhhcccCCCCCCHHHHHH-HHHHHHhcCCeEEEEEEcCCCCEEEEEEeCCceeEeeecCCe-- Confidence 1110 00000111121 237999999999986 567999999999999999999999999999999998765543 Q ss_pred eEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHH Q lcl|Aclame:pro 145 LYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEK 221 (409) Q Consensus 145 ~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~ 221 (409) +|.+ ...|..+.|+++||||++.+++.++++|+||+.++...+.+..+++.+..+.+.|+ +++++. ++..+++++ T Consensus 151 -~~~~-~~~~~~~~~~~~eVihir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~~~gil~~~~~~ls~e~ 228 (350) T protein:vir:11 151 -FYQV-RSWKDEHEFEKGSVIQLREADINQEIYGVPEWFCALQSALLNESATLFRRKYYNNGSHAGFILYMTDAAQNEED 228 (350) T ss_pred -EEEE-eeCCeEEEECcccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHH Confidence 3333 34678899999999999999999999999999999999999999999987777665 455555 456899999 Q ss_pred HHHHHHHHHHHhc--CCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc--Ccccc Q lcl|Aclame:pro 222 RQQVLEDFKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN--TNFAK 292 (409) Q Consensus 222 ~~~~~~~~~~~~~--~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~--~~~~~ 292 (409) ++++++.|++..+ |.++++|+ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|..++ +++++ T Consensus 229 ~~~l~~~~~~~~G~~N~~~~~v~~~~g~~~g~~~~pl~~~~~d~qf~e~k~~~~~eIa~a~~VPp~llGi~~~~t~~~sn 308 (350) T protein:vir:11 229 IDALRTALKTAKGPGNFRNLFVYAPNGKKEGIQLIPVSEVAAKDEFGSIKNISRDDQLAGLRVYPQLMGVVPQNAGGFGS 308 (350) T ss_pred HHHHHHHHHHhcCccccCceeeecCCCCccceEEEEcCCChhHHHHHHHHHHhHHHHHHHhCCCHHHhcccCCCCCCcCC Confidence 9999999998653 56777777 468999999999999999999999999999999999999997654 56899 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhh Q lcl|Aclame:pro 293 NEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSY 339 (409) Q Consensus 293 ~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l 339 (409) .|++.+.|++++|.|+++.|| ++|.+|..+. ..+.+|++.+| T Consensus 309 ~e~~~~~f~~~~L~P~~~~ie-~ln~~l~~~~----~~F~~~~~~~l 350 (350) T protein:vir:11 309 ISDAAAVWASLELAPMQTRLQ-QVNEMIGEEV----VRFAQFDAPGL 350 (350) T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHhhcCccc----cccCcccccCC Confidence 999999999999999999998 5888875432 22345777777 No 102 >protein:vir:5691 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:120 # MgeName: L-413C # Cross-refs: genbank:acc:NP_839850;genbank:gi:30065705;genbank:GeneID:1260599 Probab=100.00 E-value=4.6e-48 Score=280.13 Aligned_cols=322 Identities=13% Similarity=0.166 Sum_probs=226.7 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccc----cCCC---Cccccc-hhHHhhhHHHHHHHHHHHHh--hccCceeEe Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSP----WKNK---SFWGVI-NNTLETNETIFSAITKLSNS--MASLPLKMY 70 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~---~~~~v~-~~~~~~~~~v~~~i~~ia~~--ia~lp~~~~ 70 (409) |.+-+--... ...............+.|+. +.+. +|..+. ...|.+=|.-+.++..+.++ .-+.+++.+ T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~s~i~~k 79 (344) T protein:vir:56 1 MSKKKGKTPQ-PAAKTMTASAPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVK 79 (344) T ss_pred CCCCCCCCCc-hhhHHhhcCCCceEEEEcCCceeecCcchhhhHHHhhhcCccccCCCCHHHHHHHHhhhhhhCccceeh Confidence 7774332211 11111111111111111111 1111 111111 01122222223332222111 112233321 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEE Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIH 150 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~ 150 (409) +. -+.. .-+||+++|+.+| +.++.+++++||||++++|+..|++++|+|+++.+|++..+.+. |++. T Consensus 80 ~n------~l~~--~~~Pnp~~t~~~f-~~~~~d~ll~Gnay~~~~rn~~G~~~~L~pl~~~~v~~~~~~~~----~~~~ 146 (344) T protein:vir:56 80 RN------ILAS--TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV----YWWV 146 (344) T ss_pred hh------hHHh--hcCCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEeCCceeEEeecCCE----EEEE Confidence 11 1111 2379999999999 67788999999999999999999999999999999998766542 3344 Q ss_pred cCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHHHH Q lcl|Aclame:pro 151 AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQVLE 227 (409) Q Consensus 151 ~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~ 227 (409) ...|..+.|++++|||++.+++.++++|+||+..+..++.+..+++.+..+++.|+ +++++. ++..+++++++++++ T Consensus 147 ~~~g~~~~~~~~dIiHir~~~~~~~~~Gls~~~~a~~si~l~~~a~~~~~~~f~NGa~pg~Il~~~d~~ls~e~~~~lk~ 226 (344) T protein:vir:56 147 PSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEMLRE 226 (344) T ss_pred ecCCeEEEEcCccEEEECCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHH Confidence 56678899999999999999988999999999999999999999999988777665 555654 566899999999999 Q ss_pred HHHHHh-cCCCceeec------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc--CccccHHHHHH Q lcl|Aclame:pro 228 DFKQYY-EENGGILFQ------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN--TNFAKNEELNR 298 (409) Q Consensus 228 ~~~~~~-~~~~~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~--~~~~~~e~~~~ 298 (409) +|++.. .|+++.+++ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|..++ +++++.|++.+ T Consensus 227 ~~~~~~g~~~~r~l~l~~p~g~~~G~~~~pis~~~~d~qf~e~k~~s~~eIa~afrVPp~llGi~~~~t~~~~n~eq~~~ 306 (344) T protein:vir:56 227 NMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKVAK 306 (344) T ss_pred HHHHhcCCCCccceEEecCCCCccceeEEEcCCChHHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHHHH Confidence 999876 367788887 479999999999999999999999999999999999999997654 56899999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhH Q lcl|Aclame:pro 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADS 344 (409) Q Consensus 299 ~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~ 344 (409) .|++++|.|+++.|| ++|.+|..+ .++|+.-.+...|- T Consensus 307 ~f~~~tL~Pl~~~ie-~~n~~l~~~-------~~~F~~y~l~~~~~ 344 (344) T protein:vir:56 307 VFVRNELIPLQDRIR-EINGWIGQE-------VIRFKNYSLDTDNG 344 (344) T ss_pred HHHHHHHHHHHHHHH-HHHhhhccc-------cccCCCccccccCC Confidence 999999999999998 588887643 24454444444433 No 103 >protein:vir:2013 Length: 344 # NCBI annotation: gpQ # Family: family:all:196 # MgeID: mge:315 # MgeName: P2 # Cross-refs: genbank:acc:NP_046757;genbank:gi:9630328;genbank:GeneID:1261529 Probab=100.00 E-value=6.3e-48 Score=279.35 Aligned_cols=320 Identities=14% Similarity=0.165 Sum_probs=226.4 Q ss_pred CcchhhhhhhhhhhhcccccCccccccccccc------CCC---Cccccc-hhHHhhhHHHHHHHHHH--HHhhccCcee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPW------KNK---SFWGVI-NNTLETNETIFSAITKL--SNSMASLPLK 68 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~v~-~~~~~~~~~v~~~i~~i--a~~ia~lp~~ 68 (409) |.+-+--...... .... ........|+.. .+. +|..+. ...|.+=|.-+.++..+ |+...+.+++ T Consensus 1 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~f~~p~~v~~~~~~~~~~~~~~~~~~~~pp~~~~~la~~~~a~~~h~~~i~ 77 (344) T protein:vir:20 1 MSKKKGKTPQPAA-KTMT--ASGPKMEAFTFGEPVPVLDRRDILDYVECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIY 77 (344) T ss_pred CCcccCCCCcchh-hhhh--ccCCceEEEEcCCceEecCcchhhhhhhhhhcCceecCCCCHHHHHHHHhhhhhhCccce Confidence 6663221111100 0000 111111111111 111 011110 01111112222222211 1111122333 Q ss_pred EeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEE Q lcl|Aclame:pro 69 MYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYS 148 (409) Q Consensus 69 ~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~ 148 (409) .++. -+.. .-+||+++|+++| +.++.+++++||||++++|+..|++++|+|+++.++++..+.+. |. T Consensus 78 ~k~n------~l~~--~~~Pn~~lt~~~f-~~~~~d~ll~Gnay~~i~rn~~G~~~~L~pl~~~~vr~~~~~~~----~~ 144 (344) T protein:vir:20 78 VKRN------ILAS--TFIPHPWLSQQDF-SRFVLDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDV----YW 144 (344) T ss_pred ehhh------hHHH--hccCCCCCCHHHH-HHHHHHHHhcCCeEEEEEECCCCcEEEEEEcCCceeEeeecCCE----EE Confidence 2211 1111 2379999999999 57788999999999999999999999999999999998766543 33 Q ss_pred EEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEe-cCCcCCHHHHHHH Q lcl|Aclame:pro 149 IHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLK-YGSNVSTEKRQQV 225 (409) Q Consensus 149 ~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~ 225 (409) +....|..+.|+++||||++.+++.++++|+||+..+..++.+..+++.+..+++.|+ +++++. ++..+++++++++ T Consensus 145 ~~~~~~~~~~~~~~eIiHir~~~~~~~~yGls~~~~a~~si~l~~~a~~~~~~~f~NGa~p~~Il~~~d~~l~~e~~~~i 224 (344) T protein:vir:20 145 WVPSFNEPTAFAPGSVFHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDRNDIEML 224 (344) T ss_pred EEccCCeEEEEcCccEEEeCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEecCcCCCHHHHHHH Confidence 4456678899999999999999888999999999999999999999999988877665 455665 5678999999999 Q ss_pred HHHHHHHhc-CCCceeec------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc--CccccHHHH Q lcl|Aclame:pro 226 LEDFKQYYE-ENGGILFQ------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN--TNFAKNEEL 296 (409) Q Consensus 226 ~~~~~~~~~-~~~~~~vl------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~--~~~~~~e~~ 296 (409) +++|++.++ ++++.+++ ++|++|+|++.++.|+||+|.+++++++||++|||||.++|..++ +++++.|++ T Consensus 225 k~~~~~~~g~~n~r~l~l~~p~g~~~gi~~~pis~~~~d~qf~e~k~~s~~eIa~af~VPp~llGi~~~~t~~~~n~e~~ 304 (344) T protein:vir:20 225 RENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAADLLDAHRIPFQLMGGKPENVGSLGDIEKV 304 (344) T ss_pred HHHHHHhcCCCCccceEEecCCCCccceeEEEcCCChhHHHHHHHHHhhHHHHHHHhCCCHHHhccCCCCCCccccHHHH Confidence 999998764 56777776 468999999999999999999999999999999999999997554 568999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhH Q lcl|Aclame:pro 297 NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADS 344 (409) Q Consensus 297 ~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~ 344 (409) .+.|++++|.|+++.|| ++|.+|.. ..++|+...+...|. T Consensus 305 ~~~f~~~~l~P~~~~~e-~in~~lg~-------~~i~F~~~~l~~~d~ 344 (344) T protein:vir:20 305 AKVFVRNELIPLQDRIR-EINGWLGQ-------EVIRFKNYSLDTDND 344 (344) T ss_pred HHHHHHHHHHHHHHHHH-HHHHhcCC-------cccccCccccccCCC Confidence 99999999999999998 58887643 235677667766665 No 104 >protein:vir:4698 Length: 251 # NCBI annotation: hypothetical protein # Family: family:all:31 # ACLAME annotation(s): phi:0000068 - phage portal protein # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061630;genbank:gi:9635717;genbank:GeneID:1262980 Probab=100.00 E-value=5.7e-46 Score=268.62 Aligned_cols=241 Identities=18% Similarity=0.244 Sum_probs=189.8 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc-cccch Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK-VVNTE 79 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~~ 79 (409) |++|+.+. +.......... ......+..+++..+..|+.+.|+++++|++||++||++||++|++++++.+ ...|+ T Consensus 1 MglF~~~~--~r~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~al~~~~v~~~i~~ia~~iA~lp~~~~~~~~~~~~~~ 77 (251) T protein:vir:46 1 MGIFYKNE--KRDLQYNEDDL-QMMVQTLPSFQGTKLRQYKDIEAIRHSDIFTAVMMIASDLARMPIRVTVNGQINYSDR 77 (251) T ss_pred CCcccccc--ccccCCCccch-hhhhhhhccccCcCcceechhhhhccHHHHHHHHHHHHhHhhCceEEeeCccccccch Confidence 99963321 11111110000 0011112223445567788999999999999999999999999999998654 45688 Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEc---CCCeE Q lcl|Aclame:pro 80 VSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHA---ATGNK 156 (409) Q Consensus 80 ~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~---~~g~~ 156 (409) +.++|+.+||++||+++||+.++.+++++||||+++.|+..|++.+|+||+|++|++..+.+|...+++... ..|.. T Consensus 78 ~~~ll~~~Pn~~~t~~~f~~~l~~~lll~Gnay~~i~r~~~G~~~~L~~i~~~~v~v~~~~~g~~~~~~~~~~~~~~g~~ 157 (251) T protein:vir:46 78 IVNLLNTRPNPMYNGYIFKLVVFVSALLTSHGYIEITRDKTGEPMNLTFRKTSEIELKSDARGRLYYFHQRIDSNGNNIE 157 (251) T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECCCCcEEEEEEECCceEEEEECCCCcEEEEEEEeccCCccee Confidence 999999999999999999999999999999999999999999999999999999999999888776554432 34667 Q ss_pred EEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--ceeEEecCCcC-CHHHHHHHHHHHHHHh Q lcl|Aclame:pro 157 LIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--DSFMLKYGSNV-STEKRQQVLEDFKQYY 233 (409) Q Consensus 157 ~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 233 (409) +.++++||||+|.++ .++.+|+||+.++..++.++.++++++.+.+.++ ++++++.++.+ ++++.++++++|++.+ T Consensus 158 ~~~~~~diiH~r~~~-~dg~~G~spi~~~~~~i~~~~~~~~~~~~~f~ng~~p~gil~~~~~l~~~e~~~~~~~~~~~~~ 236 (251) T protein:vir:46 158 RNVKFEDMLDIKFYS-LDGINGLSLLDTLSRTIESDNNGKDFLNNFLRNGTHAGGILKMKGVLDNKKARDRAREEFPKVL 236 (251) T ss_pred EEECCccEEEecCcC-CCCeeecCHHHHHHHHHHHHHHHHHHHHHHHHccCCCcEEEEeCCCCCCHHHHHHHHHHHHHHh Confidence 899999999999875 5789999999999999999999999998887765 67788888777 5667899999999998 Q ss_pred cC---CCceeecCCCcee Q lcl|Aclame:pro 234 EE---NGGILFQEPGVEI 248 (409) Q Consensus 234 ~~---~~~~~vl~~g~~~ 248 (409) ++ +|++++ |++= T Consensus 237 ~g~~n~g~~~~---gm~~ 251 (251) T protein:vir:46 237 VELNKLGKLSY---SMNQ 251 (251) T ss_pred cCccccccccc---ccCC Confidence 64 455444 2221 No 105 >protein:vir:98853 Length: 219 # NCBI annotation: hypothetical protein # Family: family:all:196 # MgeID: mge:1495 # MgeName: F108 # Cross-refs: genbank:acc:YP_654729;genbank:gi:109302914;genbank:GeneID:4156058 Probab=100.00 E-value=2.2e-39 Score=232.53 Aligned_cols=203 Identities=11% Similarity=0.159 Sum_probs=163.3 Q ss_pred eEEEEcCCcceeEEEEE----cCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCC--c Q lcl|Aclame:pro 134 VEMLIENQSRELYYSIH----AATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKP--D 207 (409) Q Consensus 134 v~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~--~ 207 (409) |++ ..+|.. +|.+. ...|..+.++++||+|+|.+++.++++|+||+.++..++..+.++++++.++|.++ | T Consensus 1 ~r~--~~dg~~-~y~~~~~~~~~~g~~~~~~~~eilH~r~~~~~~~~~Glspi~~a~~~i~~~~aa~~~~~~~f~Ng~~p 77 (219) T protein:vir:98 1 MRV--CKDGNY-KYLMKKSLYDTKSEIYEYNKNDVIFIKLYDPMQQVYGSPDYVGGITSALLNSDATIFRRRYYSNGAHM 77 (219) T ss_pred Cce--eecCeE-EEEEecceecCCceeEEeccccEEEecCCCCCCCcceecHHHHHHHHHHHHHHHHHHHHHHHhcCCCC Confidence 222 222332 33222 23467889999999999999988999999999999999999999999988777664 5 Q ss_pred eeEEe-cCCcCCHHHHHHHHHHHHHHhc--CCCceeec-----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCCh Q lcl|Aclame:pro 208 SFMLK-YGSNVSTEKRQQVLEDFKQYYE--ENGGILFQ-----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPS 279 (409) Q Consensus 208 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~ 279 (409) ++++. +++.++++++++++++|++..+ |.++++++ ++|++|++++++++|+||+|++++++++||++||||| T Consensus 78 ~gil~~~~~~l~~e~~~~~~~~~~~~~g~~n~~~~~l~~~gg~~~G~~~~~~~~~~~d~qfle~rk~~~~eIa~~fgVPp 157 (219) T protein:vir:98 78 GFILYSTDPDMTEEMEDEIAERIRDSKGVGNFRSMFVNIAGGHPDGLKVIPIGDTGQKDEFANIKNISAQDVLTSHRFPP 157 (219) T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHhcCcccccceeEecCCCCccceeEEEccCCHHHHHHHHHHHhhHHHHHHHhCCCH Confidence 66664 5668999999999999998654 33445555 5689999999999999999999999999999999999 Q ss_pred hhcCCcc--cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhh Q lcl|Aclame:pro 280 IFLNARS--NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) Q Consensus 280 ~~l~~~~--~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d 343 (409) .+||..+ +++++|.|++.+.|+.+||.|+++.||++||++++.+ .+.+++|+.+.....+ T Consensus 158 ~~lG~~~~~~~~~sn~eq~~~~f~~~tL~P~~~~ie~~ln~~~~~~----~~~~~~F~~~~~~d~~ 219 (219) T protein:vir:98 158 GLSGIIPVNTAGLGDPLKIREAYQADEVLPLQEIIAESINSDYEIK----SALKVNFKQPEKRDKN 219 (219) T ss_pred HHcccccCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CccEEeecCcccccCC Confidence 9998653 5679999999999999999999999999999986543 3556777755544333 No 106 >protein:vir:5249 Length: 437 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:117 # MgeName: Aaphi23 # Cross-refs: genbank:acc:NP_852754;genbank:gi:31544029;interpro:IPR006445;uniprot:Q7Y5U6;genbank:GeneID:2753529 Probab=99.94 E-value=1.5e-26 Score=162.21 Aligned_cols=391 Identities=14% Similarity=0.100 Sum_probs=228.4 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |.+. ....+.....--+... ..+.+.......+.. ....|.+++.++++|+.+|+++-+.++.+..++ .+... T Consensus 1 ~~~~---D~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~-l~a~Y~~~~l~~~~vd~~a~d~~r~~~~i~~~d--~~~~~ 73 (437) T protein:vir:52 1 MKFF---DGIKSLALKLGSKQEQ-TYYSPSLSLTDDLVQ-LEALWRDNWIANKVCIKRPEDMVRNWREIYSND--LNSKQ 73 (437) T ss_pred Cchh---hhhHhHHhcCCCcccc-ceeecCccccccHHH-HHHHHHhCchhhHHhhcchHHhhcCCceEecCC--CCHHH Confidence 6662 2222222111001111 111121111112222 234688999999999999999999999986532 11122 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC---------CceeEEEeeCCcceEEEEcC--------Ccc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY---------HQPSKLFLLNPDVVEMLIEN--------QSR 143 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~---------G~~~~l~~l~p~~v~~~~~~--------~~~ 143 (409) ...+...-+..- ..+-+...+.+.-++|.|++++..+.. |.+..+.+++++.+++.... .|. T Consensus 74 ~~~~~~~~~~l~-~~~~l~~a~~~~rl~G~a~i~i~~d~~~~~~pl~~~~~~~~~~v~~~~~v~~~~~~~~dp~s~~fg~ 152 (437) T protein:vir:52 74 LDLFTKFERSLK-LRETLTKALQWSSLYGSVGLLVVTDSQNTSAPLKPTERLKRLIILPKWKISPTGTKDDDVLSPNFGR 152 (437) T ss_pred HHHHHHHHHhhc-HHHHHHHHHHhcccccceEEEEEecCCCcccccccCCceeEEEEechhhccccccccccccccccCc Confidence 122222111111 233444444555689999999988753 67888999999988753221 366 Q ss_pred eeEEEEEcCCCeEEEEccceEEEecCc---CcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCC---cC Q lcl|Aclame:pro 144 ELYYSIHAATGNKLIVHNMDMLHFKHI---VASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGS---NV 217 (409) Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~vih~~~~---~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 217 (409) ...|.+... +..+.+.++.|+||... .+.+.+.|.|+++.+.+.|.....+..............+++.++ .+ T Consensus 153 p~~y~v~~~-~~~~~iH~SRii~~~~~~~~~~~~~~~G~s~le~~~~~i~~~~~~~~~~~~l~~~~~~~v~k~~~l~~~l 231 (437) T protein:vir:52 153 YSEYSILGG-SQSITVHHSRLIILNANDAPLSDNDIWGVSDLEKIIDVLKRFDSASVNVGDLIFESKIDIFKIAGLSDKI 231 (437) T ss_pred ceEEEEecC-CcceeEccceeEEecCccCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCceecchHHHHh Confidence 667777543 34567899999999743 244667799999999999988777766653322111111222221 23 Q ss_pred CHHHHHHHHHHHHH--HhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH Q lcl|Aclame:pro 218 STEKRQQVLEDFKQ--YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE 295 (409) Q Consensus 218 ~~~~~~~~~~~~~~--~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~ 295 (409) +....+.+.++++. .+.+.+++++++.+.+|++++.+..++ .+......++||++++||..+|.+...+..++.++ T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~sgl--~~~l~~~~~~iaaa~~iP~t~L~G~s~~Glasge~ 309 (437) T protein:vir:52 232 AAGMENEVASVISAVQEIKSATNSLLLDAENEYDRKELTFTGL--KDLLTEFRNAVAGAADMPVTILFGQSVSGLASGDE 309 (437) T ss_pred cCCcHHHHHHHHHHHHHhcCCCceEEEcCCcceEEEecCcCCH--HHHHHHHHHHHHHHhcCchhhhcCcCcccccccHH Confidence 32223344444443 335667899999999999998876654 46777888999999999999887766665677787 Q ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhH-------HHHHHHHHHHHhcCCcC Q lcl|Aclame:pro 296 LNRFYLQ-------HTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADS-------ATQAEVYFKAVRSGYYT 361 (409) Q Consensus 296 ~~~~~~~-------~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~-------~~~~~~~~~~~~~g~~T 361 (409) ..+.|+. .-+.|.++.+-..|-+..+.+ ...++.++| .+|...+. +++++++.+++++|+++ T Consensus 310 D~~~yyd~i~~~Qe~~l~p~le~l~~~i~~~~~g~--~~~~~~~~f--~pL~~~s~kekae~~~~~a~a~~~~~~~g~i~ 385 (437) T protein:vir:52 310 DIQNYHEAIRRLQETRLRPIFEIIDPLICNELFGG--LPADWWFEF--VPLTTVKQEQQINMLNTFATAANTLIQNGVLN 385 (437) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcceEEe--CCcCCcCHHHHHHHHHHHHHHHHHHHhcCCCC Confidence 8888887 456777777766666655542 223455555 46655554 45556688899999999 Q ss_pred HHHHHHHhC----CCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 362 INDIREWED----LPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 362 ~NE~R~~~g----~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ++|+|++|. ++.++..|.--... ..+... +.++..+..++..+++ T Consensus 386 ~~e~r~~L~~~g~~~~i~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~ 434 (437) T protein:vir:52 386 EYQIANELRESGLFANISAEHIEELKN-ADEFAG--NFEEPEKMEGAQVQNS 434 (437) T ss_pred HHHHHHHHHhcCCCCCCCccccccccC-CCCCCC--ccCCCCCCCCCCCCCC Confidence 999999873 34444333211111 111100 0011111111222222 No 107 >protein:vir:107742 Length: 537 # NCBI annotation: gp28 # Family: family:all:297 # MgeID: mge:1520 # MgeName: BcepB1A # Cross-refs: genbank:acc:YP_024875;genbank:gi:48697517;genbank:GeneID:2948359 Probab=99.91 E-value=4.3e-24 Score=148.69 Aligned_cols=393 Identities=10% Similarity=0.066 Sum_probs=217.8 Q ss_pred Ccc----hhhhhh---hhhhhhcccccCcc------------cccccccccCCCCcccc-chhHHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MAK----ENIVTR---IKKKLIDNWIDQSA------------SKLYDFSPWKNKSFWGV-INNTLETNETIFSAITKLSN 60 (409) Q Consensus 1 M~~----~~~~~r---~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~ 60 (409) |.. -.+..+ ..+.+...-..... ..+..| +...++... ....|.+++.++.+|+.+|+ T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~a~Y~~~~l~r~iVd~~A~ 125 (537) T protein:vir:10 48 MAIRDHAIAMMPKVDGSHPDMAMDGLDVEGGTFSAYANPNLSEGLVLW--YAQQAFIGHQMCALIATHWLVNKACSQMPR 125 (537) T ss_pred CCCCCccCcccccccccccchhccccccchhhhhhhccccccchhhhh--ccccCCccHHHHHHHHhCchhhhhhhhhhH Confidence 111 001111 00110000000000 000000 001111111 12457899999999999999 Q ss_pred hhccCceeEeeccc-cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee---c-------------CCCce Q lcl|Aclame:pro 61 SMASLPLKMYEDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER---D-------------IYHQP 123 (409) Q Consensus 61 ~ia~lp~~~~~~~~-~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~---~-------------~~G~~ 123 (409) ++.+-++++...+. ....+....|....+....+..|.+.+.+ .-++|.+++++.- + ..|.. T Consensus 126 d~~r~~~~i~~~~~~~~~~~~~~~l~~~~~~l~~~~~l~~a~~~-~rlyG~~~i~i~v~~~D~~~~~~Pl~~~~i~kg~~ 204 (537) T protein:vir:10 126 DAMRKGYKIISDDGNELDPKDAKFIDRYDRAFNIKKHAIQFVRK-GRIFGIRIALFKVDSPDPYYYEKPFNIDGVMPGAY 204 (537) T ss_pred HhhcCCceeecCCcccccHHHHHHHHHHHHHhhHHHHHHHHHHh-cccccceEEEEeecCcCCcccccccccccccccce Confidence 99999998865432 33334444454444444445556555554 4457888877642 1 12335 Q ss_pred eEEEeeCCcceEEEE------c----CCcceeEEEEEcCCCeEEEEccceEEEecCcC------cccccccccHHHHHHH Q lcl|Aclame:pro 124 SKLFLLNPDVVEMLI------E----NQSRELYYSIHAATGNKLIVHNMDMLHFKHIV------ASNMVQGISPIDVLKN 187 (409) Q Consensus 124 ~~l~~l~p~~v~~~~------~----~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~~~~~~G~sp~~~~~~ 187 (409) ..+.+++|..+.+.. | +.|....|.+. | ..+.++.|+||.... +...+.|.|.++.+.+ T Consensus 205 k~l~vidp~~~~~~~~~~~~~dp~sp~fg~P~~y~v~---g--~~iH~SRli~f~g~~~p~~~~~~~~~~G~Svlq~~~~ 279 (537) T protein:vir:10 205 KGIVQIDPYWCAPLLDAQASSNPVSMHFYEPTYWLIN---G--KKYHRSHLAIYINDEVVDFLKPSYIYGGVPLPQQIME 279 (537) T ss_pred eEEEEechhhcccccchhhhccCCccccCCceeeeec---C--eEecceeEEEecCCCCchhhhcccCcccccHHHHHHH Confidence 678888887777532 1 12445555542 2 467889999996542 2344569999999999 Q ss_pred HHHHHHHHHHHHHHhcCCCceeEEecC--Cc-CCHHHHHHHHHHHHHHhcCCCceeecCC-CceeeeccCChhhHHHHHH Q lcl|Aclame:pro 188 TTDFDNAVRTFNLTEMQKPDSFMLKYG--SN-VSTEKRQQVLEDFKQYYEENGGILFQEP-GVEIEPLPKKYVSEDIVAS 263 (409) Q Consensus 188 ~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~~-g~~~~~l~~~~~d~~~~e~ 263 (409) .|.....+..............+++.+ .. .+++++.+..+.+....++. ++++++. +.+|++++.+..++ .+. T Consensus 280 ~l~~~~~t~~~~~~l~~~~~~~v~k~~~~~~l~~~~~~~~r~~~~~~~r~n~-g~~~id~e~e~~e~~~~~lsgl--~~~ 356 (537) T protein:vir:10 280 RVYAAERTANEGPMLAMTKRQTVLKVDAAQVLANKQQFDETMSWWTATRDNY-QVRVVDKDNEDVVQIDTTLNDL--DKV 356 (537) T ss_pred HHHHHHHHHHHHHHHHHhcCCceeeechHHhhcCHHHHHHHHHHHHhhcCCc-ceeEecCCCceeEEEeccCCCH--HHH Confidence 988777666555443322222222222 12 23444444444555444444 4566655 68899888776654 567 Q ss_pred HHHHHHHHHHHhcCChhhcCCc-ccCccccHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcChhhccccceEEecc Q lcl|Aclame:pro 264 ENLTRERVANVFQLPSIFLNAR-SNTNFAKNEELNRFYLQH------TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNV 336 (409) Q Consensus 264 ~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~~~~~~~~------~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~ 336 (409) .....+.||.+.|||..+|-+. ..|..++.+...+.|+.. .|.|.++.+.+.|.+..+.+ .. .+.|.+ T Consensus 357 l~~~~~~iAa~~~IP~t~L~G~sp~GlnatGe~D~~~yyd~I~~~Qe~l~p~l~~l~~ll~~~~~~~---~~--~~~i~f 431 (537) T protein:vir:10 357 IMNQYQLVCAIARTPAPKMLGTVPTGFNSTGDYEEASYHEECESTQDDMRPLIDRHHQLVCRSHLRK---RI--RVKVEF 431 (537) T ss_pred HHHHHHHHHhhhCCCceeeccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---Cc--ceEEEe Confidence 7888889999999999976443 345556667666666643 37888888887777766653 22 355666 Q ss_pred hhhhhhhHHHHHH-------HHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcc--cccccccCCCCCC-- Q lcl|Aclame:pro 337 KSYLRADSATQAE-------VYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTP--LELRKSLKGGDKN-- 405 (409) Q Consensus 337 ~~l~~~d~~~~~~-------~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~--~~~~~~~~gg~~n-- 405 (409) .+|...|.+++++ ++.+++++|++++||+|+.|+.+|..+-+.+....+..-.+.. .+.....++.++. T Consensus 432 ~pL~~~s~kEkAei~~~~a~a~~~~~~~G~i~~~Evr~~L~~~~~~g~~~l~~~~~~ed~e~~~~~~~~~~~~~~~~~~~ 511 (537) T protein:vir:10 432 PPMDAPKESERADTFLKKMQAAKLAFEMGAVDGVDVNEYLRMDPTLGFTSITPAMRPTDAEDIDVDDEGKPVRIIEDQPA 511 (537) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhccCccccccccCCCChhhhhcccCCccCCcCCCCCCCCC Confidence 6887777777665 5889999999999999999988765433322211111000000 0000000000000 Q ss_pred ----------------CCCC Q lcl|Aclame:pro 406 ----------------VNES 409 (409) Q Consensus 406 ----------------~~~~ 409 (409) .+++ T Consensus 512 ~~~~~~~~~~~~~~~~~~~~ 531 (537) T protein:vir:10 512 PSEMFGATSSGESANDPRDS 531 (537) T ss_pred ccccCCCCccccccCCCccC Confidence 0000 No 108 >protein:vir:94049 Length: 532 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1493 # MgeName: OP2 # Cross-refs: genbank:acc:YP_453629;genbank:gi:84662665;genbank:GeneID:5142559 Probab=99.90 E-value=1.5e-23 Score=145.72 Aligned_cols=396 Identities=11% Similarity=0.054 Sum_probs=221.3 Q ss_pred Cc------------------chhhhhhhhhhhhcccc------cCc-ccccccccccCCCCcccc-chhHHhhhHHHHHH Q lcl|Aclame:pro 1 MA------------------KENIVTRIKKKLIDNWI------DQS-ASKLYDFSPWKNKSFWGV-INNTLETNETIFSA 54 (409) Q Consensus 1 M~------------------~~~~~~r~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~ 54 (409) |. ..+..-+......+... ... ......|.. ...+..+ ....|..++.++.+ T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~--~~~~~~~~l~a~Y~~~~l~r~~ 100 (532) T protein:vir:94 23 VDAKRATHTSLGLATAHEIDPTAYSPYERNAAQNAMAMDYGLQTGRNGRNALSFVE--ATSWPGFPTLALLAQLPEYRTM 100 (532) T ss_pred hhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccCccccccccccccc--ccccchHHHHHHHHcCchhhhh Confidence 11 11111100000000000 000 000001110 1111111 13467889999999 Q ss_pred HHHHHHhhccCceeEeeccc-cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC-------------- Q lcl|Aclame:pro 55 ITKLSNSMASLPLKMYEDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-------------- 119 (409) Q Consensus 55 i~~ia~~ia~lp~~~~~~~~-~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~-------------- 119 (409) |+.+|+++-+-.+++..+++ .........+........- .+-+...+....++|.+++++.-.. T Consensus 101 Vd~~aed~~r~~~~i~~~~~~~~~~~~~~~i~~~~~~l~v-~~~l~~a~~~~rlyG~a~i~i~v~~~~~~~~~~~p~~l~ 179 (532) T protein:vir:94 101 HETPADECVRAWGKITCSSKDELAADKATRITQKLEQYNV-RTLVRTVVIHDQAYGGAHVFPHLKMDGDSVPADAPLLLS 179 (532) T ss_pred hccchHHHhhCCceEeeCCccccchHHHHHHHHHHHhhhH-HHHHHHHHHhhhcccceEEEEEeccCCcccccccccccc Confidence 99999999999999865443 2233343344333333322 3334444455567898887764322 Q ss_pred -----CCceeEEEeeCCcceEEEEcC--------CcceeEEEEEcCCCeEEEEccceEEEecCcC------ccccccccc Q lcl|Aclame:pro 120 -----YHQPSKLFLLNPDVVEMLIEN--------QSRELYYSIHAATGNKLIVHNMDMLHFKHIV------ASNMVQGIS 180 (409) Q Consensus 120 -----~G~~~~l~~l~p~~v~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~~~~~~G~s 180 (409) .|....+.+++|..+++.... +|...+|.... | ..+.++.|+||.... +...+.|.| T Consensus 180 ~~~I~~g~~~~l~vld~~~v~p~~~~~~dp~sp~fg~P~~y~v~~--g--~~iH~SRli~f~g~~~p~~~~~~~~~~G~S 255 (532) T protein:vir:94 180 PSFVQRGCLIGFATIEPMWLSPNAYNATDPTLPSFYKPDSWIATS--G--KKIHSSRIHTVVGRPVGDMLKAAYSFRGVS 255 (532) T ss_pred ccccccceeeEEEeechheecccccccccccccccCCceeEEEcc--C--eeeccceEEEecCCCchhhhcccccccccc Confidence 234568889999887765322 34444554432 2 357899999997542 223457999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecC--CcCCHHHHHHHHHHHHHH--hcCCCceeecCC-CceeeeccCCh Q lcl|Aclame:pro 181 PIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYG--SNVSTEKRQQVLEDFKQY--YEENGGILFQEP-GVEIEPLPKKY 255 (409) Q Consensus 181 p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~vl~~-g~~~~~l~~~~ 255 (409) .++.+.+.|.....+..............+++.+ ..++.+..+++.++++.. ..+..++++++. +.+|++++.+. T Consensus 256 vlq~~~~~l~~~~~t~~~~~~l~~~~~~~v~k~~~a~~ls~~~~~~~~~r~~~~~~~~~n~g~~~id~~~e~~e~~~~~l 335 (532) T protein:vir:94 256 ISQLAMPYVDNWLRTRQSVSDTVKQFSMTNLATDMAQLLAPGGAQSLDARLQLFNLYRDNRNIGALDKGTEEIQQTNTPL 335 (532) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeechHHhhcchhHHHHHHHHHHHHhhcCCccceEEcCCCceeEEEeccc Confidence 9999999888777666554432222212222222 345666778888887743 344556777764 57899888776 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCCcc-cCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcc Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNEELNRFYLQ-------HTLLPIVKQYEEEFNRKLLTKTDRE 327 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~-~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~ln~~ll~~~~~~ 327 (409) .+ +.+......++||++.|||..+|-+.. .+-.++.+...+.|+. .-+.|.++.+-+.|.+..+.. .. T Consensus 336 sg--l~~~l~~~~~~iAaa~~IP~t~LfG~sp~GlnstGe~D~~~yyd~I~s~Qe~~l~p~le~l~~~l~~s~~g~--~~ 411 (532) T protein:vir:94 336 SG--LDSLQAQSQEQMAAVSHIPLVKLLGITPNGLNASSDGEIRVWYDFIAGYQATNLTPLMEWIIDLIQLSEYGQ--ID 411 (532) T ss_pred CC--HHHHHHHHHHHHHhHhCCCeeeeecCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC Confidence 65 456778888899999999999775443 3344555656666665 346788888877777655542 12 Q ss_pred ccceEEecchhhhhhhHHHH-------HHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccccc------------- Q lcl|Aclame:pro 328 KNRYFKFNVKSYLRADSATQ-------AEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLY------------- 387 (409) Q Consensus 328 ~~~~~~~d~~~l~~~d~~~~-------~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~------------- 387 (409) .+++|+| .+|...+.+++ ++++.+++++|++++||+|++++..|..+.+......+.. T Consensus 412 ~d~~~~f--~pL~~~s~kEkAei~~~~a~a~~~~~~~Gvi~~~Evr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (532) T protein:vir:94 412 PGLAWEW--SPLMELDDKELAEVRQLNASTDSTLMELGVIDAKMVQQRLAADPTSGYAGALGERDELDDVEEIAKQLMAA 489 (532) T ss_pred CCceEEe--CCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhcCCccccccccccccccccccchhhhhccc Confidence 3445554 46665555554 4566889999999999999999998876544332211110 Q ss_pred ---chhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 388 ---PIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 388 ---~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |.+..++.......++.++.++ T Consensus 490 ~~~~~~~~~~~~~~~~~~~~d~~~~ 514 (532) T protein:vir:94 490 ALNPPATAPQTPNPQPDSEDDQTDN 514 (532) T ss_pred ccCCCCCCCCCCCCCCCCCCCCCCC Confidence 1000000000111112222222 No 109 >protein:vir:99563 Length: 862 # NCBI annotation: minor head protein-like protein # Family: family:all:297 # MgeID: mge:1544 # MgeName: BcepF1 # Cross-refs: genbank:acc:YP_001039808;genbank:gi:126011058;genbank:GeneID:4818258 Probab=99.88 E-value=7.1e-23 Score=142.01 Aligned_cols=391 Identities=10% Similarity=0.018 Sum_probs=211.2 Q ss_pred Ccchhh---hhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc--c Q lcl|Aclame:pro 1 MAKENI---VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK--V 75 (409) Q Consensus 1 M~~~~~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~--~ 75 (409) |..+++ ..++...-..... .....+.+|.......+.. ....|.+++.++.+|+.+|+++-+-.+++....+ . T Consensus 98 ~~~Dgl~n~~~~lG~~~~~s~y-~~~~~~~~~~~~~~f~gyq-l~alY~~~~larkiVd~pAeDatR~g~~I~~~~d~~e 175 (862) T protein:vir:99 98 FAMDDGGGAPVPIGAEGKQSSY-AVPEALQDWYLSQGFIGHQ-ACALIAQHWLVDKACSLAGEDAIRNGWHLKSLGEGEE 175 (862) T ss_pred hhhhcchhhhhhcccccccccc-ccchhccccccccCcccHH-HHHHHHhCchhhhhhhhhhHHHhhCCceEeecCcccc Confidence 221221 1111000000000 0000111111111111111 2346889999999999999999999999875332 2 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee---c-------------CCCceeEEEeeCCcceEEEE- Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER---D-------------IYHQPSKLFLLNPDVVEMLI- 138 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~---~-------------~~G~~~~l~~l~p~~v~~~~- 138 (409) ...+....+...-..+.-+.-|.+.+ ...-++|.+++++.- + ..|.+..|.+++|.++.+.. T Consensus 176 ~~~e~~~~ie~~~~rL~v~~~l~eai-r~~RLyGga~ililv~~~D~~~LsqPLn~e~I~kG~lkgl~vlDp~w~~p~~v 254 (862) T protein:vir:99 176 IDEESLEKFKAIDVEFKVKENLIEFN-RFKNVFGIRVAIFVVDSEDPDYYEKPFNPDGITPGSYRGISQIDPYWMMPMLT 254 (862) T ss_pred cCHHHHHHHHHHHHHhhHHHHHHHHH-HhcccccceEEEEEecCcCchhhhcCcCcccccccceeEEEEechhhhccccc Confidence 22233333332222222233444444 444467777666532 1 12345678888887766521 Q ss_pred ---cCC------cceeEEEEEcCCCeEEEEccceEEEecCcC------cccccccccHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 139 ---ENQ------SRELYYSIHAATGNKLIVHNMDMLHFKHIV------ASNMVQGISPIDVLKNTTDFDNAVRTFNLTEM 203 (409) Q Consensus 139 ---~~~------~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~ 203 (409) ..+ |....|.+. | ..+-++-|+||.... +...+.|+|.++.+.+.|.....+........ T Consensus 255 ~~~~~Dp~sp~yGkP~~y~I~---g--~~IH~SRliif~g~~vpd~lk~ay~f~G~SvLe~iyd~L~~~d~t~~saa~Ll 329 (862) T protein:vir:99 255 AESTADPSSQFFYEPEFWIIS---G--QKYHRSHLIIARGPQPADILKPTYIFGGIPLVQRIYERVYAAERTANEAPLLA 329 (862) T ss_pred ccccccccccccCCceeeeec---C--eeeccceeEEecCCCchhhhhccCCccCccHHHHHHHHHHHHHHHHHHHHHHH Confidence 122 444455443 2 356778888886533 33445699999999998887776665554433 Q ss_pred CCCceeEEecCC--cCCHHHHHHHHHHHHH--HhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCCh Q lcl|Aclame:pro 204 QKPDSFMLKYGS--NVSTEKRQQVLEDFKQ--YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPS 279 (409) Q Consensus 204 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~ 279 (409) ......+++.+. .+..+ +.+.++++. .+.+..++++++.+.+|+.++.+..++ .+......++||++.+||. T Consensus 330 ~ka~l~v~ktd~l~~l~~e--d~l~~r~~~~~~~rdN~Gi~liD~eEe~e~ls~slSGL--~dll~~~~q~IAaas~IP~ 405 (862) T protein:vir:99 330 MNKRTTAIHTDTAKAIANE--DKFIQRLMFWVRYRDNHAVKVLGTDETMEQFDTSLADF--DAVIMGQYQLVASIAKTPA 405 (862) T ss_pred HHhccceeechhHhhhccH--HHHHHHHHHHHhccCcceeEEecCCCceeEEecccCCh--HHHHHHHHHHHHhhhCCCc Confidence 222222222222 22222 334444432 334455688999999999988876654 4666777889999999999 Q ss_pred hhcCCcc-cCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHH-- Q lcl|Aclame:pro 280 IFLNARS-NTNFAKNEELNRFYLQ-------HTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAE-- 349 (409) Q Consensus 280 ~~l~~~~-~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~-- 349 (409) .+|-+.. +|..++.++..+.|+. .-|.|.++.+...+...+. ...++.++ +.+|...+.+++++ T Consensus 406 tiLfGqspaGlnATGE~D~~nYyD~I~s~QE~~L~P~LerL~~li~~~lg----~~~d~~ie--FnpL~~~sekEkAEi~ 479 (862) T protein:vir:99 406 TKLLGTAPKGFNSTGEFETISYHEELESIQEHVYMPFLQRHYLISRLSLG----IQHEIDVV--MEPVASMTAQQQADLN 479 (862) T ss_pred eeecccCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCcceEE--eCCCCCCCHHHHHHHH Confidence 9775544 6666777777777776 4567888888776655542 22344444 55777777776665 Q ss_pred -----HHHHHHhcCCcCHHHHHHHh------CCCCCCCCCEE----eecccccchhccccccccc--------------- Q lcl|Aclame:pro 350 -----VYFKAVRSGYYTINDIREWE------DLPPVEGGDKP----LISGDLYPIDTPLELRKSL--------------- 399 (409) Q Consensus 350 -----~~~~~~~~g~~T~NE~R~~~------g~~p~~~gd~~----~~~~n~~~~~~~~~~~~~~--------------- 399 (409) ++.+++++|+++++|+|++| |++.++..|.. ..+.++..+.......... T Consensus 480 kk~Aea~~~lv~sGvispdEvR~~L~~~~~~g~~~l~ded~E~d~~~~~e~~~~~e~~g~a~~~ap~de~~aga~~~~~e 559 (862) T protein:vir:99 480 KTKAEGGKVLIDGGVISPDEERNRIRDDKRSGYNRLTKEDAEETPGASPENLAAYQKAGAAQETASAKETQAGAAVTTAE 559 (862) T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHhcCCcCCCCCCcccccccCCCCcccccccccCCcccccccccccccccCCcccc Confidence 47789999999999999975 44444332211 1122222221111110000 Q ss_pred ------------CCCCCCCCCC Q lcl|Aclame:pro 400 ------------KGGDKNVNES 409 (409) Q Consensus 400 ------------~gg~~n~~~~ 409 (409) ++|....+.. T Consensus 560 ~d~~~~p~~~~~~~g~~~~~t~ 581 (862) T protein:vir:99 560 GDQPNVQMVPSMKPGQMVGPEV 581 (862) T ss_pred CCcccccccCCCCCCCcccccc Confidence 1111111000 No 110 >protein:vir:79647 Length: 435 # NCBI annotation: PorT # Family: family:all:297 # MgeID: mge:1872 # MgeName: TLS # Cross-refs: genbank:acc:YP_001285520;genbank:gi:148734503;genbank:GeneID:5220005 Probab=99.87 E-value=3.9e-22 Score=137.96 Aligned_cols=383 Identities=11% Similarity=0.036 Sum_probs=206.1 Q ss_pred Ccchhhhhhhhhhh--hccc---ccCcccccccccccCCCCcc-ccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKL--IDNW---IDQSASKLYDFSPWKNKSFW-GVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK 74 (409) Q Consensus 1 M~~~~~~~r~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 74 (409) |++| ++|.+.+. .+++ +........+ .++.+..+. ......|.+++.++.+|+.+|+++-+-.|++..+.+ T Consensus 1 ~~~~--m~~~~~~~~~~D~~~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~~ 77 (435) T protein:vir:79 1 MGVF--MSDKVKAITKEDGYNEIFGSKDGTFRP-NAFYMQRAAFKALSQFYEEDGMARRIVDVIPEEMVTPGFKVDGVKN 77 (435) T ss_pred CCcc--cccccccchhhcchhhhhccccccccc-CcccCCcCCHHHHHHHHhcCchhhhhhccchHHhhcCCceecCCCh Confidence 8876 55544322 2222 1110011000 011111111 112345789999999999999999999988754322 Q ss_pred cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee-cC---------CCceeEEEeeCCcceEEEE------ Q lcl|Aclame:pro 75 VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER-DI---------YHQPSKLFLLNPDVVEMLI------ 138 (409) Q Consensus 75 ~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~-~~---------~G~~~~l~~l~p~~v~~~~------ 138 (409) . ..+...+. ... ..+-+...+....++|.+++++.. +. .|....+.++++..+++.. T Consensus 78 ~--~~~~~~~~----~l~-~~~~l~~a~~~~rl~G~~~i~i~~~d~~~~~~Pl~~~g~i~~i~v~d~~~i~~~~~~~dp~ 150 (435) T protein:vir:79 78 E--KSFKSRWD----ELR-LNAKIIDALSWSRLFGGSAILAVVADNKMLKSPVKPGAQLEDIRVYDRYQITIHERETNAR 150 (435) T ss_pred H--HHHHHHHH----Hhh-HHHHHHHHHHhhhccccEEEEEEecCCCCcccccccCCceeeEEeechhhccchhhccCCc Confidence 1 11111111 111 233444445556678888777653 22 2445588888888776542 Q ss_pred -cCCcceeEEEEEcCCC-eEEEEccceEEEecCc------CcccccccccHH-HHHHHHHHHHHHHHHHHHHhcCCCcee Q lcl|Aclame:pro 139 -ENQSRELYYSIHAATG-NKLIVHNMDMLHFKHI------VASNMVQGISPI-DVLKNTTDFDNAVRTFNLTEMQKPDSF 209 (409) Q Consensus 139 -~~~~~~~~~~~~~~~g-~~~~~~~~~vih~~~~------~~~~~~~G~sp~-~~~~~~i~~~~~~~~~~~~~~~~~~~~ 209 (409) .+.|.+..|.+...++ ....+.++.|+||... .+...+.|.|++ +.+.+.|.....+.......+...... T Consensus 151 sp~fg~P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~e~~~~~l~~~~~~~~~~~~l~~~~~~~ 230 (435) T protein:vir:79 151 SVRYGEPKLYKISPGGDIPEFFVHYSRICIIDGERVSNEKRRQNDGWGASILNKRLIEAIVDYNYCQELATQLLRRKQQA 230 (435) T ss_pred ccccCcceEEEEecCCCCCceEEcceeEEEecCCcchhhhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc Confidence 1246667777765443 3467889999999632 344667799997 578887776666655543322111111 Q ss_pred EEecC---CcC-CHHHHHHHHHHHHHH---hcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc Q lcl|Aclame:pro 210 MLKYG---SNV-STEKRQQVLEDFKQY---YEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFL 282 (409) Q Consensus 210 ~~~~~---~~~-~~~~~~~~~~~~~~~---~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l 282 (409) +++.+ ..+ +......+++++... .++.+.+++.+++.+|+.++.+..+ +.+......++||++.|||..+| T Consensus 231 v~~~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~i~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP~t~L 308 (435) T protein:vir:79 231 VWKARDLALMCDDEEGRYAARLRLAQVDDESGVGKAIGIDATDEEYEVLNSDVSG--VPEFLQEKIDRIVALTGIHEIII 308 (435) T ss_pred cccchhHHHhhcCccchHHHHHHHHHHHHhcCCCCceeEecCCcceEEEecccCC--HHHHHHHHHHHHHhhhCCCeeee Confidence 12221 111 222333444444332 2334556666667789998887765 46778888999999999999887 Q ss_pred CCcccC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHH-------HHHHHHHHH Q lcl|Aclame:pro 283 NARSNT-NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSA-------TQAEVYFKA 354 (409) Q Consensus 283 ~~~~~~-~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~-------~~~~~~~~~ 354 (409) .+...+ -.++.+...+.|+..+ .-+.+....-+-.+|+.-..+..++.++| ++|...+.+ +.++++.++ T Consensus 309 ~G~s~~glnstgd~d~~~yyd~i-~~~Qe~~l~p~l~~l~~li~~s~d~~~~f--~pL~~~sekEkAei~~~~a~a~~~~ 385 (435) T protein:vir:79 309 KNKNTGGVSASQNTALETFYKLI-DRKRVEDYKPILEFLLPFMISETEWSIEF--EPLSVPSDKDKAEIMAKNVESVVKL 385 (435) T ss_pred ccCCccccccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCCeEEe--CCCCCCCHHHHHHHHHHHHHHHHHH Confidence 554443 3455566666776643 22222211111112222222234555555 456655554 445567788 Q ss_pred HhcCCcCHHHHHHHh-CCCCC---CCCCEEeecccccchhcccc--cccccCCCCCC Q lcl|Aclame:pro 355 VRSGYYTINDIREWE-DLPPV---EGGDKPLISGDLYPIDTPLE--LRKSLKGGDKN 405 (409) Q Consensus 355 ~~~g~~T~NE~R~~~-g~~p~---~~gd~~~~~~n~~~~~~~~~--~~~~~~gg~~n 405 (409) +++|+++++|+|+.+ ...+. .+.+.. .++.+.+ .....+||++. T Consensus 386 ~~~g~i~~~e~r~~L~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~~e~g~~~ 435 (435) T protein:vir:79 386 KAEQAINLKETRDTLRSICPDLKIMDNDNI-------ELPEPEDLDPEPGQEGGLNK 435 (435) T ss_pred HhcCCCCHHHHHHHHHHhccccCCCCcccc-------cCCccccCCCCCCCCCCCCC Confidence 999999999999977 32221 111111 1111111 11223333333 No 111 >protein:vir:96068 Length: 765 # NCBI annotation: conserved hypothetical protein ORF017 # Family: family:all:297 # MgeID: mge:1597 # MgeName: F8 # Cross-refs: genbank:acc:YP_001294434;genbank:gi:149408331;genbank:GeneID:5237187 Probab=99.86 E-value=6.9e-22 Score=136.60 Aligned_cols=392 Identities=12% Similarity=0.060 Sum_probs=207.3 Q ss_pred Ccchh-hhhhhhhhhhc---c---cccCcc----cccc----------cccccCC--------------CCcccc-chhH Q lcl|Aclame:pro 1 MAKEN-IVTRIKKKLID---N---WIDQSA----SKLY----------DFSPWKN--------------KSFWGV-INNT 44 (409) Q Consensus 1 M~~~~-~~~r~~~~~~~---~---~~~~~~----~~~~----------~~~~~~~--------------~~~~~v-~~~~ 44 (409) |...+ ++...+..... . .++.+. .... ......+ ..+... .... T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~gyql~al 116 (765) T protein:vir:96 37 MIKLGKIRGWNVEPEKAPVIRSVKDFLEPGLSVAMDSAYGDGPTPAAKAAAGGQNPYVVPTMLQDWYNSQGFIGYQACAI 116 (765) T ss_pred chhHHHHhhcccccccCCCCCCCCcccCcccceeccccccccccchHHHhhhccCccchhhHHHhhhcccCCccHHHHHH Confidence 43332 33322211100 0 000000 0000 0000000 000000 1235 Q ss_pred HhhhHHHHHHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec------ Q lcl|Aclame:pro 45 LETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD------ 118 (409) Q Consensus 45 ~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~------ 118 (409) |.+++.++.+|+.+|+++-+-.|.+...++....+....|...-.... ..+-+...+.+.-++|.+|+++.-. T Consensus 117 Y~~~~l~rkiVd~pAeDa~R~g~~I~~~~~e~~~~~~~~l~~~~~rl~-v~~~l~ea~~~~RlyGga~i~i~i~~~D~~~ 195 (765) T protein:vir:96 117 ISQHWLVDKACSMSGEDAARNGWELKSDGRKLSDEQSALIARRDMEFR-VKDNLVELNRFKNVFGVRIALFVVESDDPDY 195 (765) T ss_pred HHhCchhhhhhhcchHHhhcCCceeecCccccCHHHHHHHHHHHHHhh-HHHHHHHHHHHhhhceeeEEEEEecccCcch Confidence 889999999999999999999998876544443333334433222222 2344444555566788888765432 Q ss_pred ----------CCCceeEEEeeCCcceEEEE------c----CCcceeEEEEEcCCCeEEEEccceEEEecCcC------c Q lcl|Aclame:pro 119 ----------IYHQPSKLFLLNPDVVEMLI------E----NQSRELYYSIHAATGNKLIVHNMDMLHFKHIV------A 172 (409) Q Consensus 119 ----------~~G~~~~l~~l~p~~v~~~~------~----~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~ 172 (409) ..|....|..++|..+.+.. | ..|....|.+. | ..+.++-||||.... + T Consensus 196 l~~PL~~~~I~kg~~kgl~vldp~~~~~~~v~e~~~Dp~sp~fg~P~~y~i~---g--~~IH~SRli~~~g~~lpd~lk~ 270 (765) T protein:vir:96 196 YEKPFNPDGIAPGSYKGISQIDPYWAMPQLTAESTADPSAEHFYEPDFWIIS---G--KKYHRSHLVVVRGPQPPDILKP 270 (765) T ss_pred hhccccccccccceeeEEEEechhhcccccchhccccccccccCcceeeeec---C--ceeccceEEEecCCCchhhhcc Confidence 11344567777776655421 1 12344445443 2 256788899986543 3 Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCC--cCCHHHHHHHHHHHHHH--hcCCCceeecCCCcee Q lcl|Aclame:pro 173 SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGS--NVSTEKRQQVLEDFKQY--YEENGGILFQEPGVEI 248 (409) Q Consensus 173 ~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~vl~~g~~~ 248 (409) ...+.|.|.++.+.+.|.....+..............+++.+. .+.. .+.+.++++.. +.+..++++++.+.+| T Consensus 271 ~~~~~G~Svlq~~yd~I~~~~~t~~~~a~Ll~k~~~~v~k~~~~~~l~~--~~~l~~r~~~~~~~r~n~g~~~id~ee~~ 348 (765) T protein:vir:96 271 TYIFGGIPLTQRIYERVYAAERTANEAPLLAMSKRTSTIHVDVEKAIAN--EDAFNARLAFWIANRDNHGVKVIGIDETM 348 (765) T ss_pred ccCccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccceeeechHhhhcc--HHHHHHHHHHHHHhcCCceeEEecCCcce Confidence 3445699999999998877766655443332222111222221 1221 22344444432 3345568889999999 Q ss_pred eeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc-cCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 249 EPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNEELNRFYLQ-------HTLLPIVKQYEEEFNRKL 320 (409) Q Consensus 249 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~-~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~ln~~l 320 (409) +.++.+..+ +.+......++||++.+||...|-+.. +|..++.+...+.||. .-+.|.++.+-+.|-.. T Consensus 349 e~~s~~lsg--l~d~l~~~~~~iAaas~IP~t~LfGqsp~GlnATGe~D~~nYyD~I~s~Qe~~l~p~le~L~~li~~s- 425 (765) T protein:vir:96 349 EQFDTNLSD--FDSVIMNQYQLVAAIAKTPATKLLGTSPKGFNATGEHETISYHEELESIQEHIFDPLLERHYLLLAKS- 425 (765) T ss_pred eEEecccCC--HHHHHHHHHHHHHhhhCCCeeeeccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh- Confidence 999887765 467778888999999999998886654 5666677777777777 34455555544444332 Q ss_pred cChhhccccceEEecchhhhhhhHHHHHH-------HHHHHHhcCCcCHHHHHHHhCCCCCCCCCE-----E-----eec Q lcl|Aclame:pro 321 LTKTDREKNRYFKFNVKSYLRADSATQAE-------VYFKAVRSGYYTINDIREWEDLPPVEGGDK-----P-----LIS 383 (409) Q Consensus 321 l~~~~~~~~~~~~~d~~~l~~~d~~~~~~-------~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~-----~-----~~~ 383 (409) .....++. +.+.+|...+.+++++ ++.+++++|+++++|+|+++..++.-+.+. . .-| T Consensus 426 ---~~i~~d~~--i~FnpL~~~sekEkAei~~k~Aea~~~~~~~Gvis~dEvR~~L~~~~~~g~~~l~d~~~e~~~~~~p 500 (765) T protein:vir:96 426 ---ESIDVQLE--IVWNPVDSTTSQQQAELNNKKAATDEIYINSGVVSPDEVRERLRDDPRSGYNRLTDDQAETEPGMSP 500 (765) T ss_pred ---cCCCCcce--EEeCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccccCCCCCCCccccccccCCCc Confidence 22333444 4455776666666554 588899999999999999986655322111 1 111 Q ss_pred ccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 384 GDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 384 ~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) .+...++...+.+ ....++.+-++. T Consensus 501 e~~~~~~~~~~~~-~~~~~e~~~~~a 525 (765) T protein:vir:96 501 ENLAELEKAGAQS-AKAKGEAERAEA 525 (765) T ss_pred cccccccCCCccc-ccccCccccccC Confidence 1111111110000 000000000000 No 112 >protein:vir:108215 Length: 469 # NCBI annotation: gp6 # Family: family:all:2372 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552335;genbank:gi:160700655;genbank:GeneID:5758935 Probab=99.85 E-value=2e-20 Score=128.58 Aligned_cols=404 Identities=9% Similarity=-0.016 Sum_probs=236.5 Q ss_pred Ccchhhhh-hhhhhhhcccccC-cccccccccccCCC-CccccchhHH-hhhHHHHHHHHHHHHhhccCceeEeeccccc Q lcl|Aclame:pro 1 MAKENIVT-RIKKKLIDNWIDQ-SASKLYDFSPWKNK-SFWGVINNTL-ETNETIFSAITKLSNSMASLPLKMYEDYKVV 76 (409) Q Consensus 1 M~~~~~~~-r~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~-~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~ 76 (409) |..-..=. |............ .............. ....+ .+.. .+.+.|.+|++.+...|.+++|+|...++.. T Consensus 4 ~~~~~~p~~~~g~~~~~~~~~~~~~~~~~e~~~~lr~~~~~~l-y~~m~e~D~~i~s~l~~rk~av~~~~w~v~p~~~~~ 82 (469) T protein:vir:10 4 RVKTAAPVSEAGYVFGSGVVDGWTVWDPFEQTPELQWPQSVAV-YSRMDNEDSRVTSLLEAISLPIRSTPWRIRANGASD 82 (469) T ss_pred cccCCCCccchhhhhhcccccchhhccccccccccccccchHH-HHHHHhhChHHHHHHHHHHHHHhcCCceEecCCCCH Confidence 22211100 1100000000000 00000001111111 11112 2334 4589999999999999999999997543221 Q ss_pred --cchhhhhhhccc------------cCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC-----C--ceeEEEeeCCcceE Q lcl|Aclame:pro 77 --NTEVSDLLTVSP------------NNSLSSFDFINQIETIRNEKGNAYVLIERDIY-----H--QPSKLFLLNPDVVE 135 (409) Q Consensus 77 --~~~~~~~L~~~p------------n~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~-----G--~~~~l~~l~p~~v~ 135 (409) ...+...|.... .-..+|.+++..++.+.+.+|-++.++++... | .+..+.+.|+.++. T Consensus 83 e~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~w~~~l~~~l~~a~~~G~s~~Eivw~~~~~~~dG~~~~~~l~~rp~~~i~ 162 (469) T protein:vir:10 83 EVTEFVSRNLMVPIDGEDDVRNPGRSRGRFSWAEHLEEVTSPTLQFGHAVFEQVYRPRNQSPDGRFWLRKLAPRPQWTIS 162 (469) T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhccccHHHHHHHHHHHhhhhCceeeeeeeecccccCCCceeeeeeeecCcccce Confidence 111222222111 11347888888888888889999999987543 3 36777888887663 Q ss_pred -EEEcCCcceeEEEEEcC-----------CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 136 -MLIENQSRELYYSIHAA-----------TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEM 203 (409) Q Consensus 136 -~~~~~~~~~~~~~~~~~-----------~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~ 203 (409) ...+.++....+..... .+....+++...+++++....+.++|.|.+..|.-.........+..+.+. T Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lp~~k~i~~~~~~~~g~p~g~gLlr~~~~~~~fK~~~~~~w~~f~ 242 (469) T protein:vir:10 163 KFNVAPDGGLESIEQIAPPARTRGSLYVANIAPPEIPVNRLVVYTRNKRPGQWQGKSILRSAYKHWLLKDKLLRIEAATA 242 (469) T ss_pred eeeeccCCceeeeeecCcccccccccccCCCCccccccCcEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHH Confidence 34455555544433221 223456777777766666666778999999999988877777766654433 Q ss_pred C--CCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhh Q lcl|Aclame:pro 204 Q--KPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIF 281 (409) Q Consensus 204 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 281 (409) . ..|..+.+++...++++.+.+.+.+.+...+....++++.|++++-+..+.+...+.++.++-.++|++++--. .+ T Consensus 243 EryG~P~~vgky~~~a~~~ek~~l~~a~~~~~~g~~a~~iip~~~~ie~~ea~g~~~~~~~li~~~d~~Isk~iLG~-tl 321 (469) T protein:vir:10 243 ERNGMGIPVGTASSATDEDEVRKMAALARSVRGGINAGVGLAQGQILELLGVSGNLPDIRRAIEGHDRSIALSGLAH-FL 321 (469) T ss_pred HHcCCcceEEecCCCCCHHHHHHHHHHHHHHhcCCceEEEccCCceEEEeecCCCchHHHHHHHHHHHHHHHHHhcc-cc Confidence 2 23455778888889999999998888776555556788899888877766666679999999999999885321 11 Q ss_pred cCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc----cccceEEecchhhhhhhHHHHHHHHHHHHhc Q lcl|Aclame:pro 282 LNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR----EKNRYFKFNVKSYLRADSATQAEVYFKAVRS 357 (409) Q Consensus 282 l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~----~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~ 357 (409) -.....++++..+ .........+.-.++.|++.||++|+.+.-. ....+.+|.++... .+.+..++.++++++. T Consensus 322 Ts~~~gGS~a~~~-vh~ev~~d~~~sDa~~i~~tln~~li~~l~~lN~g~~~~~P~~~~~~~e-~~~~~~a~~i~~l~~~ 399 (469) T protein:vir:10 322 NLDGKGGSYALAS-VLEDPFTQAVHAYATSICRIANQHIIEDLVDINFGVDTPAPVLTFDPIG-SRQDLTAAAVKLLYDA 399 (469) T ss_pred cccCccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccEEEecCCC-CcHHHHHHHHHHHHhc Confidence 1122334554433 3444555677889999999999988875321 11222344444443 4567789999999999 Q ss_pred CCc-----CHHHHHHHhCCCCCCCCCEEeeccc--ccchhcccccccccCCCCCCCC-CC Q lcl|Aclame:pro 358 GYY-----TINDIREWEDLPPVEGGDKPLISGD--LYPIDTPLELRKSLKGGDKNVN-ES 409 (409) Q Consensus 358 g~~-----T~NE~R~~~g~~p~~~gd~~~~~~n--~~~~~~~~~~~~~~~gg~~n~~-~~ 409 (409) |++ +.+.+|+.+|+|+.+.++....+.. ..| ............+..+.. .. T Consensus 400 G~~~~~~~~~~~~~e~~gip~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 458 (469) T protein:vir:10 400 GVFDDDPAVKRAIRQRFNLPSELNDTPSAEPEEPAAVP-NQSAAPARTRSSGNADARARA 458 (469) T ss_pred CCccCccccHHHHHHHhCCCCCCCCcccccchhcccCC-CCCccccccCCCCCccccccc Confidence 984 4577999999997766654432211 111 000000000001111000 01 No 113 >protein:vir:80040 Length: 461 # NCBI annotation: gp3 # Family: family:all:297 # MgeID: mge:1876 # MgeName: B054 # Cross-refs: genbank:acc:YP_001468707;genbank:gi:157325287;genbank:GeneID:5601731 Probab=99.85 E-value=1.1e-21 Score=135.59 Aligned_cols=396 Identities=9% Similarity=0.051 Sum_probs=217.0 Q ss_pred Ccchhhhh-----hhhh---hhhcccccCcccccccccccCCCC--ccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKENIVT-----RIKK---KLIDNWIDQSASKLYDFSPWKNKS--FWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~~~~~-----r~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |...|=-. +... .+..+.-.........+..+.... ........|..++.++.+|+.+|+.+-+-++++. T Consensus 1 ~~~~~~a~~~~~~~~a~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~l~~lY~~~~l~r~iVd~~a~d~~r~g~~i~ 80 (461) T protein:vir:80 1 MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQTPGNGQKLDLKACENLYASNSIAMNIVDIISEDMVRAGWSLK 80 (461) T ss_pred CccchhhhhhhhhhhhhhhhHHHhhcCCcchhhhhhccccCcccccCHHHHHHHHHhCCccchhhccchHHhhcCCeeee Confidence 66532211 1000 011111111111111111111111 1111235678899999999999999999888875 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC-------------CceeEEEeeC---Ccce Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY-------------HQPSKLFLLN---PDVV 134 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~-------------G~~~~l~~l~---p~~v 134 (409) .+++ +....+...-+....+ .-+...+.+..++|.+++++.-... +.+..+..|. +..+ T Consensus 81 ~~~~----~~~~~~~~~~~~l~~~-~~l~~~~~~~rl~G~a~i~i~v~d~~~~~~~~~~pl~~~~~~~~~~l~~~~~~~i 155 (461) T protein:vir:80 81 TDNK----EMKKNIESKWRKLKTK-DRFQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQKV 155 (461) T ss_pred cCCH----HHHHHHHHHHHHhhHH-HHHHHHHHhhcccccEEEEEEeecCCccccCccCCcccccccceeEEEecccccc Confidence 4432 2222222222222223 3445555667789999988753211 1122333322 2222 Q ss_pred EEE---E----cCCcceeEEEEEcC------------CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 135 EML---I----ENQSRELYYSIHAA------------TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV 195 (409) Q Consensus 135 ~~~---~----~~~~~~~~~~~~~~------------~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~ 195 (409) .+. . .+.|...+|.+... ....+.+.++-|+|+.+....+...|.|.++.+.+.|.....+ T Consensus 156 ~~~~~~~dp~sp~fg~P~~y~i~~~~~~~~~~~~~~~~~~~~~iH~SRii~~~~~~~~~~~~G~S~le~~~~~l~~~~~~ 235 (461) T protein:vir:80 156 TQLYLNQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKGRSIFESLYDIITVMDTS 235 (461) T ss_pred chhhhcccCcCcccccceEEEEeccccccccccccccCccceEEccccEEEecCCCCCccccCcchHHHHHHHHHHHHHH Confidence 211 1 12466666766432 2234678999999999877778888999999999998777766 Q ss_pred HHHHHHhcCCCceeEEecC--CcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 RTFNLTEMQKPDSFMLKYG--SNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVAN 273 (409) Q Consensus 196 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 273 (409) ..............+++.+ ..+..+....+.++++.... ..++++++.+.+|+.++.+..+ +.+..+...++||+ T Consensus 236 ~~~~~~l~~~~~~~v~k~~~l~~~~~~~~~~~~~~~~~~~~-~~g~~~~d~~e~~e~~~~~lsg--l~~~l~~~~~~iaa 312 (461) T protein:vir:80 236 LWSVGQILYDFAFKVYKTDDIDALNKDDKANLTAMLDFMFR-TEALAIIKGDEQLTKESTNVSG--MKDLLDYGWDYLAG 312 (461) T ss_pred HHHHHHHHHHhCCCceecchHHhhhchHHHHHHHHHHHhcC-CceEEEEcCCcceEEEecCcCC--HHHHHHHHHHHHhh Confidence 6554432221111222222 23344455566666765444 4458888888899999887665 45788889999999 Q ss_pred HhcCChhhcCCcccCccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhc--cccceEEecchhhhhhhH Q lcl|Aclame:pro 274 VFQLPSIFLNARSNTNFAKNEELNRFYLQH-------TLLPIVKQYEEEFNRKLLTKTDR--EKNRYFKFNVKSYLRADS 344 (409) Q Consensus 274 ~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~-------~l~P~~~~ie~~ln~~ll~~~~~--~~~~~~~~d~~~l~~~d~ 344 (409) +.+||..+|.+...+..++.++..+.|+.. -+.|.++.+-+.+-+..+..... .....+.+.+.+|...+. T Consensus 313 ~s~iP~t~L~G~s~g~~asge~D~~~yyd~i~~~qe~~l~p~le~l~~~i~~s~~~~~~~~~p~~~~~~i~f~~L~~~s~ 392 (461) T protein:vir:80 313 AVRMPKTVLKGQEAGTLTGAQYDVMNYYARVSSIQENRLRPQLEYLTRLLMWASDDCGPSIDPDSFEWAIEFNPLWNLDS 392 (461) T ss_pred hhcCCeeeeecccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccceEEEeCCCCCCCH Confidence 999999888666566667777777666653 34566666655555443321111 112345566677776666 Q ss_pred HHHHH-------HHHHHHhcCCcCHHHHHHHh-CCCCC-CCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 345 ATQAE-------VYFKAVRSGYYTINDIREWE-DLPPV-EGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 345 ~~~~~-------~~~~~~~~g~~T~NE~R~~~-g~~p~-~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++++ ++.+++++|+++++|+|+.+ +.-.. |.+...-......+++.. ..+.+.+.+.+| T Consensus 393 kekAe~~~~~a~a~~~~~~~g~is~~e~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~~~g 461 (461) T protein:vir:80 393 KTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKL-----VYDAYAKKNADG 461 (461) T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCCCccCCCCCchhhhhhhh-----ccccccccCCCC Confidence 66654 58889999999999999865 33221 111110000111111111 112223333333 No 114 >protein:vir:104338 Length: 422 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1593 # MgeName: RTP # Cross-refs: genbank:acc:YP_398967;genbank:gi:81343951;genbank:GeneID:3778870 Probab=99.84 E-value=1.1e-20 Score=129.98 Aligned_cols=382 Identities=11% Similarity=0.015 Sum_probs=207.4 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |.+. ....+.+.. ......+ +.......+.. ....|.+++.++.+|+.+|+++-+-.|.+..+++. ..+ T Consensus 1 ~~~~---D~~~n~~~g----g~~~~~~-~~~~~~~~~~~-l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~~~~~~--~~~ 69 (422) T protein:vir:10 1 MVKT---DSYANIFLG----GSDGSEI-YGSLQNQAPTI-LASLYADNALVRRIIDTIPETALAAGFHIDGIDDE--PAF 69 (422) T ss_pred Cccc---hhhHHHHcC----CCCCccc-cCcccccCHHH-HHHHHHhChhhHHHHhhhhHHHhcCCccccCCCHH--HHH Confidence 6552 222233221 1111111 11111111111 23468899999999999999999988888543321 111 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee-c---------CCCceeEEEeeCCcceEEEE-------cCCcc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER-D---------IYHQPSKLFLLNPDVVEMLI-------ENQSR 143 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~-~---------~~G~~~~l~~l~p~~v~~~~-------~~~~~ 143 (409) ...+. .. ...+-+...+....++|.+++++.. + ..|....+.++++..+++.. .+.|. T Consensus 70 ~~~~~----~l-~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~~~~Pl~~~g~~~~l~v~d~~~i~~~~~~~dp~s~~fg~ 144 (422) T protein:vir:10 70 WSRWD----DL-EMTQNINDAWSWARLFGGAAIVAIVKDNRALTSPVREGAELETVRVYDRTQVKVQTREENPRNARFGE 144 (422) T ss_pred HHHHH----Hh-hHHHHHHHHHHhhccccceEEEEEecCCCCccccccccCceeeEEeeccccccchhcccCccccccCc Confidence 11111 11 2234444555566678988887754 2 23556688888888877642 22466 Q ss_pred eeEEEEEcCC-CeEEEEccceEEEecCc------CcccccccccHHHH-HHHHHHHHHHHHHHHHHhcCCCceeEEecCC Q lcl|Aclame:pro 144 ELYYSIHAAT-GNKLIVHNMDMLHFKHI------VASNMVQGISPIDV-LKNTTDFDNAVRTFNLTEMQKPDSFMLKYGS 215 (409) Q Consensus 144 ~~~~~~~~~~-g~~~~~~~~~vih~~~~------~~~~~~~G~sp~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (409) ...|.+.... +....+.++-|+||... .+...++|.|++.. +.+.|.....+.......+......+++.++ T Consensus 145 P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~~~~~~v~~~~~ 224 (422) T protein:vir:10 145 PLTYRITTNESDMFYDVHYSRIHIIDGERIPNVMRRQNDGWGRSVLSSDILDSIKDYTNCERLATQLLKRKQQAVWKAKG 224 (422) T ss_pred ceEEEEecCCCCcceeeccceeEEeCCCCchhhhcccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh Confidence 6777776543 33467888999999643 24456679999986 6677766665555443322111111222221 Q ss_pred ---cC-CHHHHHHHHHHHHHHh---cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccC Q lcl|Aclame:pro 216 ---NV-STEKRQQVLEDFKQYY---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNT 288 (409) Q Consensus 216 ---~~-~~~~~~~~~~~~~~~~---~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~ 288 (409) .+ +......++++++... ++.+.+++.+++.+|++++.+..+ +.+......++||++.|||..+|.+...+ T Consensus 225 l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP~t~L~G~s~~ 302 (422) T protein:vir:10 225 LAELCDDSEGFGAARLRLAQVDNNSGVGQAIGIDAESEEYSVLNSDIGG--IDAFLDKKFDRIVALSGIHEIILKNKNVG 302 (422) T ss_pred HHHhcCCccchHHHHHHHHHHHHhcCCccceeEecCCcceEEEecccCC--hHHHHHHHHHHHHhhhCCCeeeeccCCcc Confidence 11 2233444445544333 334456666677899999887775 56778888999999999999988555443 Q ss_pred -ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHH-------HHHHHHHHHHhcCCc Q lcl|Aclame:pro 289 -NFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSA-------TQAEVYFKAVRSGYY 360 (409) Q Consensus 289 -~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~-------~~~~~~~~~~~~g~~ 360 (409) -.++.++..+.|+.. |.-+.+.....+-.+|+....+..++.++|+ +|...+.+ +.++++.+++++|++ T Consensus 303 Glnatgd~d~~~yyd~-i~~~Qe~~l~p~l~~l~~~i~~s~~~~~~f~--pL~~~sekekaei~~~~a~a~~~~~~~g~i 379 (422) T protein:vir:10 303 GVSSSQNTALETFHKL-VDRKRNAELLPILEFLIPFIVNAEEWSVEFN--PLAQESSKDKAEILEKNVNSIAALIAAGAM 379 (422) T ss_pred cccccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCcEEEeC--CCCCCCHHHHHHHHHHHHHHHHHHHhcCCC Confidence 335567677777763 2222222111122222222223345666655 55544444 445678889999999 Q ss_pred CHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCCCCCCC Q lcl|Aclame:pro 361 TINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 361 T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~ 408 (409) +++|+|+.|--.... .-+..+..+.+..... ......++.++| T Consensus 380 ~~~e~r~~L~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~d 422 (422) T protein:vir:10 380 DIDEARDTLRTIAPE----VKINDGSVETEVTISE-TSNDPLEVPTDD 422 (422) T ss_pred CHHHHHHHhhhhccc----ccCCCCCCccccchhh-cCCCCCCCCCCC Confidence 999999988332211 1111122221111111 011111222222 No 115 >protein:vir:103860 Length: 528 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1522 # MgeName: D3112 # Cross-refs: genbank:acc:NP_938234;genbank:gi:38229139;genbank:GeneID:2648175 Probab=99.83 E-value=1.3e-19 Score=124.14 Aligned_cols=400 Identities=13% Similarity=0.085 Sum_probs=227.8 Q ss_pred CcchhhhhhhhhhhhcccccCcccc-ccc----cccc-----CCCCcccc--------------chhHH-hhhHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASK-LYD----FSPW-----KNKSFWGV--------------INNTL-ETNETIFSAI 55 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~-~~~----~~~~-----~~~~~~~v--------------~~~~~-~~~~~v~~~i 55 (409) |... +.+..+.+......++... +.. +..+ .+.....+ ..+.+ .+.+.|.+|+ T Consensus 1 ~~~~--~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~~~m~e~D~~i~s~l 78 (528) T protein:vir:10 1 MAAI--VDIYGNPLRTQQLRKQQTAHLAGLAKEFANHPAKGLTPAKLAHILIEAEQGHLQAQAELFMDMEERDAHLFAEM 78 (528) T ss_pred CCee--ECCCCCccccccccchhhhhhhhhhhhhcccCCCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHH Confidence 6542 2222222221222221111 000 0000 00000000 00112 2588999999 Q ss_pred HHHHHhhccCceeEeeccc--cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ceeEEEeeC Q lcl|Aclame:pro 56 TKLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLN 130 (409) Q Consensus 56 ~~ia~~ia~lp~~~~~~~~--~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~~~l~~l~ 130 (409) +.+...|.+++|.|....+ .........+...-+....+.+++..+. +.+++|-++.++++...| .|..+.+++ T Consensus 79 ~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~~~~r~ 157 (528) T protein:vir:10 79 SKRKRAVLGLDWTIEPPRNASAAEKADAEYLHELLLDLEGIEDLMLDCM-DGVGHGYSAIELDWSLQGREWLPQAFDHRP 157 (528) T ss_pred HHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHHhCCccHHHHHHHHH-hhhhhcceeEEEEEeecCCceeEEEeeeec Confidence 9999999999999976432 2223333333332222223556666554 577899999999875543 477899999 Q ss_pred CcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCce Q lcl|Aclame:pro 131 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDS 208 (409) Q Consensus 131 p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~ 208 (409) +.++.+..+.. ... ...........+++...++.++....+.++|.|.+..|.-.........+..+.+.. ..|. T Consensus 158 ~~~f~~~~~~~--~~l-~~~~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~ 234 (528) T protein:vir:10 158 QSWFQLNPDDQ--DEL-RLRDNSIAGEVLQPFGWIMHKPRSRSGYVARSGLFRVLAWPYLFKHYSTADLAEMLEIYGLPI 234 (528) T ss_pred ccceeeccCCC--cEE-eccCCCCCceeecCCCeEEEeecCCCCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCCe Confidence 98877654432 222 112222233456655544445555667788999999999888777766665544332 2355 Q ss_pred eEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhc---CCc Q lcl|Aclame:pro 209 FMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFL---NAR 285 (409) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l---~~~ 285 (409) .+.+++...++++.+++.+.+.++..+++.+++.+..+++.+.+.. ....|.++.++-.++|+++.-= ..+- +.. T Consensus 235 ~igky~~~a~~~ek~~L~~al~~i~~~~~~iiP~~~~ie~~ea~~~-~~~~f~~li~~~d~~Isk~iLG-qtlTs~~~~g 312 (528) T protein:vir:10 235 RLGKYPPGTPDEEKVTLLRAVTGLGHAAAGIIPESMSIDFQEASKG-SAEPFMAMMRWCDDSMSKAILG-GTLTSQTSES 312 (528) T ss_pred EEEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCC-ChhHHHHHHHHHHHHHHHHHhh-hhhhcccccc Confidence 6778887789999999999998887766544444444455554433 2334788888999999988521 2221 111 Q ss_pred ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccc-------cceEEecchhhhhhhHHHHHHHHHHHHhcC Q lcl|Aclame:pro 286 SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK-------NRYFKFNVKSYLRADSATQAEVYFKAVRSG 358 (409) Q Consensus 286 ~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~-------~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g 358 (409) ..|+++..+. ........+.-.++.|+..||+.|+.+.-.-. ..+.+|.++.....|++++++.+.+++..| T Consensus 313 ~~gS~Alg~v-h~~v~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G 391 (528) T protein:vir:10 313 GGGAYALGQV-HNEVRHDLLAADARQLAATLSRDLLWPLLVLNRSGNLDARRAPRLVFDLKDRADLAAMATSLPPLVKLG 391 (528) T ss_pred ccchhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEecCCCcccHHHHHHHHHHHHhCC Confidence 1233433222 33445567777999999999998866532211 112234444556788899999999999999 Q ss_pred C-cCHHHHHHHhCCCCCCCCCEEeecccccchhcccc---cccc----cCCCCCCCCCC Q lcl|Aclame:pro 359 Y-YTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLE---LRKS----LKGGDKNVNES 409 (409) Q Consensus 359 ~-~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~---~~~~----~~gg~~n~~~~ 409 (409) + ++..++|+.+|+|....++.+..+....+...... .... ..+....+++- T Consensus 392 ~~i~~~~i~e~~gip~p~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (528) T protein:vir:10 392 VQVPVNWVQEQLGIPLPANGEAVLGDQAGAGIAQLSRRPGPRIAALAQVIGPRYRDQEA 450 (528) T ss_pred CCCCHHHHHHHhCCCCCCCCcccccCCCcccccccCcccccccccccccccccccccch Confidence 8 99999999999987666666654333222111100 0000 00001111111 No 116 >protein:vir:107662 Length: 427 # NCBI annotation: putative portal protein # Family: family:all:297 # MgeID: mge:1518 # MgeName: T1 # Cross-refs: genbank:acc:YP_003893;genbank:gi:45686310;genbank:GeneID:2773002 Probab=99.83 E-value=1.2e-20 Score=129.85 Aligned_cols=376 Identities=10% Similarity=0.045 Sum_probs=205.9 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEV 80 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~ 80 (409) |+.++-=+ ..+.+ ........+. ......+.. ....|.+++.++.+|+.+|+++-+-.|++...++. ..+ T Consensus 1 ~~~~~~d~-~~~~~----~~~~~~~~~~--~~~~~~~~~-l~a~Y~~~~l~~~~Vd~~aed~~r~g~~i~g~~~~--~~~ 70 (427) T protein:vir:10 1 MKIVKHDG-YNDIF----NGGADGSPKP--FFMSDASYH-VGSFYNDNATAKRIVDVIPEEMVTAGFKMSGVKDE--KEF 70 (427) T ss_pred CCccccch-HHHHh----hcCCCCcccC--ccccCchHH-HHHHHHcCchhhhhhccchHHhhcCCccccCccHH--HHH Confidence 55432111 11111 1111111111 111111111 23568899999999999999999999888543221 111 Q ss_pred hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee----------cCCCceeEEEeeCCcceEEEEc-------CCcc Q lcl|Aclame:pro 81 SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER----------DIYHQPSKLFLLNPDVVEMLIE-------NQSR 143 (409) Q Consensus 81 ~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~----------~~~G~~~~l~~l~p~~v~~~~~-------~~~~ 143 (409) ...+. + . ...+-+...+...-++|.+++++.- ...|.+..+.+++++.+++... +.|. T Consensus 71 ~~~~~-~---l-~~~~~l~~a~~~~rl~G~a~i~i~v~d~~~l~~p~~~~g~l~~l~v~d~~~~~~~~~~~dp~s~~fg~ 145 (427) T protein:vir:10 71 KSLWD-S---Y-KLDSSLVDLLCWARLYGGAAMVAIIKDNRMLTSQAKPGAKLEGVRVYDRFAITVEKRVTNARSPRYGE 145 (427) T ss_pred HHHHH-H---h-hHHHHHHHHHHhccccceeEEEEEecCCCccccccCCCcceeEEEEechhcccccccccCccccccCc Confidence 11111 1 1 1233445555666678999887642 2346788999999988766432 2366 Q ss_pred eeEEEEEcCCC-eEEEEccceEEEecCc------CcccccccccHHHH-HHHHHHHHHHHHHHHHHhcCCCceeEEecCC Q lcl|Aclame:pro 144 ELYYSIHAATG-NKLIVHNMDMLHFKHI------VASNMVQGISPIDV-LKNTTDFDNAVRTFNLTEMQKPDSFMLKYGS 215 (409) Q Consensus 144 ~~~~~~~~~~g-~~~~~~~~~vih~~~~------~~~~~~~G~sp~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (409) ...|.+...++ ..+.+.++-|+||... .+...++|.|++.. +.+.|.....+.......+......+++.++ T Consensus 146 P~~y~v~~~~~~~~~~iH~SRli~~~g~~~p~~~~~~~~~~G~S~l~~~~~~~i~~~~~~~~~~~~l~~k~~~~v~k~~~ 225 (427) T protein:vir:10 146 PEIYKVSPGDNMQPYLIHHSRVFIADGERVAQQARKQNQGWGASVLNKSLIDAICDYDYCESLATQILRRKQQAVWKVKG 225 (427) T ss_pred ceEEEEecCCCCcceEEccccEEEecCCCchhhhcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccccccchh Confidence 77777765443 3367889999999643 23456779999865 5566665555544433322111111222211 Q ss_pred ---cC-CHHHHHHHHHHHHH---HhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccC Q lcl|Aclame:pro 216 ---NV-STEKRQQVLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNT 288 (409) Q Consensus 216 ---~~-~~~~~~~~~~~~~~---~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~ 288 (409) .+ +......+++++.. ..++.+.+++.+.+.+|++++.+..+ +.+......++||++.+||..+|.+...+ T Consensus 226 l~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~e~~e~~~~~lsg--l~~~~~~~~~~iaaa~~IP~t~L~G~sp~ 303 (427) T protein:vir:10 226 LAEMCDDDDAQYAARLRLAQVDDNSGVGRAIGIDAETEEYDVLNSDISG--VPEFLSSKMDRIVSLSGIHEIIIKNKNVG 303 (427) T ss_pred HHHHhcCccchHHHHHHHHHHHHhcCcccceeeecCCCceeEEecccCC--hHHHHHHHHHHHHhhhCCCeeeeccCCcc Confidence 11 11222234444443 22345566677777889998887765 45678888899999999999988555443 Q ss_pred -ccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHH-------HHHHHHHH Q lcl|Aclame:pro 289 -NFAKNEELNRFYLQH-------TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSA-------TQAEVYFK 353 (409) Q Consensus 289 -~~~~~e~~~~~~~~~-------~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~-------~~~~~~~~ 353 (409) -.++.+...+.|+.. .+.|.++.+-+ ...+..++.++|+ +|...+.+ ++++++.+ T Consensus 304 Glnstgd~D~~nyyd~i~~~Qe~~l~p~l~~l~~--------~i~~s~~~~~~f~--pL~~~s~kEkaei~~~~a~a~~~ 373 (427) T protein:vir:10 304 GVSASQNTALETFYKLVDRKREEDYRPLLEFLLP--------FIVDEEEWSIEFE--PLSVPSKKEESEITKNNVESVTK 373 (427) T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhcCCCcEEEeC--CCCCCCHHHHHHHHHHHHHHHHH Confidence 335556666677663 23444433322 2223346666665 55444444 44567889 Q ss_pred HHhcCCcCHHHHHHHh----CCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 354 AVRSGYYTINDIREWE----DLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 354 ~~~~g~~T~NE~R~~~----g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ++++|+++++|+|+.| +...+.+++.. +....+...+.+ ...+|.+.+++ T Consensus 374 ~~~~gvi~~~e~r~~L~~~~~~~~~~~~~~~----~~e~~~~~~e~~--p~~~e~~~d~~ 427 (427) T protein:vir:10 374 AITEQIIDLEEARDTLRSIAPEFKLKDGNNI----NIREPEETTEPE--PGLGEKLEDEN 427 (427) T ss_pred HHhcCCCCHHHHHHHHHhhhccccCCCCccc----cccccchhcCCC--CCCCCCCCCCC Confidence 9999999999999976 33333333321 111111111111 12233333333 No 117 >protein:vir:99232 Length: 526 # NCBI annotation: putative portal protein # Family: family:all:313 # MgeID: mge:1649 # MgeName: DMS3 # Cross-refs: genbank:acc:YP_950451;genbank:gi:119953652;genbank:GeneID:4643092 Probab=99.82 E-value=2.4e-19 Score=122.65 Aligned_cols=402 Identities=12% Similarity=0.058 Sum_probs=229.2 Q ss_pred Ccc-hhhhhhh-hhhhhcc-----------cccCcccccccccc---cCCC--Ccc-----ccchhHHhhhHHHHHHHHH Q lcl|Aclame:pro 1 MAK-ENIVTRI-KKKLIDN-----------WIDQSASKLYDFSP---WKNK--SFW-----GVINNTLETNETIFSAITK 57 (409) Q Consensus 1 M~~-~~~~~r~-~~~~~~~-----------~~~~~~~~~~~~~~---~~~~--~~~-----~v~~~~~~~~~~v~~~i~~ 57 (409) |.. ....+|- ....... ........+..+.. .... .+. .+..+...+.+.|.+|++. T Consensus 1 ~~~~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iLr~a~~gd~~~~~~L~e~m~e~D~~i~s~l~~ 80 (526) T protein:vir:99 1 MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSK 80 (526) T ss_pred CCeeECCCCCccccccccchhhhhhhhhhhhhcccCcCCCCHHHHHHHHHhhhCCCHHHHHHHHHHHHhhChHHHHHHHH Confidence 554 2333331 1110000 00000001111000 0000 000 1111111258999999999 Q ss_pred HHHhhccCceeEeeccc--cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ceeEEEeeCCc Q lcl|Aclame:pro 58 LSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNPD 132 (409) Q Consensus 58 ia~~ia~lp~~~~~~~~--~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~~~l~~l~p~ 132 (409) +...|.+++|.|....+ .........+...-+....+.+++..+. +.+.+|-++.++++...| .|..+.+.++. T Consensus 81 Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~g~~~~~~l~~r~~~ 159 (526) T protein:vir:99 81 RKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRPQS 159 (526) T ss_pred HHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcccCHHHHHHHHH-HhhhhcceeEEEEEeecCCceeEEEeeeeccc Confidence 99999999999985432 2223333344333333334677777776 688899999999876543 47789999998 Q ss_pred ceEEEEcCCcceeEEEEEcCCCeEEEEccc-eEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCcee Q lcl|Aclame:pro 133 VVEMLIENQSRELYYSIHAATGNKLIVHNM-DMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDSF 209 (409) Q Consensus 133 ~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~~ 209 (409) ++.+..+.... ..+. ........+++. -|+|. +....+.++|.|.+..|.-.........+..+.+.. ..|.. T Consensus 160 ~f~~~~~~~~~-l~~~--~~~~~g~~l~~~k~i~~~-~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~~ 235 (526) T protein:vir:99 160 WFQLNPEDQNE-LRLR--DNSPAGEALQPFGWIIHR-PRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIR 235 (526) T ss_pred ceeeccCCCcE-EEec--CCCCCceeecCCCeEEEe-ecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCceE Confidence 88765544332 2222 222333456655 55554 555567789999999998887777766655443332 34556 Q ss_pred EEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHh-cCChhh-cCCccc Q lcl|Aclame:pro 210 MLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVF-QLPSIF-LNARSN 287 (409) Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f-gvp~~~-l~~~~~ 287 (409) +.+++...++++.+++.+.+.++.++++.+++-+..+++.+.+.. ....|.++.++-.++|++++ |=.... .+.... T Consensus 236 igky~~~a~~~ek~~L~~av~~i~~d~~~iiP~~~~ie~~ea~~~-~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~g~~ 314 (526) T protein:vir:99 236 LGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQG-SSEPFLAMMRQSEDAISKAVLGGTLTSTTSQSGG 314 (526) T ss_pred EEecCCCCCHHHHHHHHHHHHHHhhCcEEEecCCceeEEeecCCC-CHHHHHHHHHHHHHHHHHHHhhhhhccccccCcc Confidence 777887789999999999888876665544444444455554332 33457888889999999884 422111 111122 Q ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccc-------cceEEecchhhhhhhHHHHHHHHHHHHhcCC- Q lcl|Aclame:pro 288 TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK-------NRYFKFNVKSYLRADSATQAEVYFKAVRSGY- 359 (409) Q Consensus 288 ~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~-------~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~- 359 (409) ++++..+.. .......+.-.++.|++.||+.|+.+.-.-. ..+.+|.++.....|.+.+++.+.+++..|+ T Consensus 315 gS~a~g~vh-~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~G~~ 393 (526) T protein:vir:99 315 GAFALGQVH-NEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLE 393 (526) T ss_pred hhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhCCCc Confidence 344433333 3445556777999999999998876532211 1122344445568889999999999999997 Q ss_pred cCHHHHHHHhCCCCCCCCCEEeecccccchhccccccc-----ccCCCCCCCCCC Q lcl|Aclame:pro 360 YTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRK-----SLKGGDKNVNES 409 (409) Q Consensus 360 ~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~-----~~~gg~~n~~~~ 409 (409) ++..++|+.+|+|...+++.++.+..-.+......... ...+.....++. T Consensus 394 i~~~~i~e~~Gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) T protein:vir:99 394 IPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) T ss_pred cCHHHHHHHhCCCCCCCcccccCCCCCCcccccccccccccccccccccCcchhh Confidence 99999999999987666665544322111110000000 000000111111 No 118 >protein:vir:79233 Length: 526 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1867 # MgeName: Phage MP22 # Cross-refs: genbank:acc:YP_001469155;genbank:gi:157834998;genbank:GeneID:5648814 Probab=99.82 E-value=3.5e-19 Score=121.77 Aligned_cols=399 Identities=12% Similarity=0.064 Sum_probs=228.6 Q ss_pred CcchhhhhhhhhhhhcccccCcccc-cc----cccc-----cCCCCcccc--------------chhHH-hhhHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASK-LY----DFSP-----WKNKSFWGV--------------INNTL-ETNETIFSAI 55 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~-~~----~~~~-----~~~~~~~~v--------------~~~~~-~~~~~v~~~i 55 (409) |.. |+.+..+.+....+.+++.. +. .+.. +.+.....+ ..+.. .+.+.|.+|+ T Consensus 1 ~~~--~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~il~~a~~gd~~~~~~L~edm~e~D~~i~s~l 78 (526) T protein:vir:79 1 MAQ--IVDVYGNPIRPQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEM 78 (526) T ss_pred CCe--eeCCCCCccCccccchhhhhhhhhhhhhcccCCCCCcCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHH Confidence 544 12222111111111111110 00 0000 000000000 00112 2578999999 Q ss_pred HHHHHhhccCceeEeeccc--cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ceeEEEeeC Q lcl|Aclame:pro 56 TKLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLN 130 (409) Q Consensus 56 ~~ia~~ia~lp~~~~~~~~--~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~~~l~~l~ 130 (409) +.+...|.+++|.|....+ .........+...-+....+.+++..+. +.+.+|-++.++++...| .+..+.+.+ T Consensus 79 ~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~~~~~i~~~l-dA~~~G~s~~Ei~w~~~~g~~~~~~l~~r~ 157 (526) T protein:vir:79 79 SKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDAL-DGIGHGYSCIELEWALQGREWMPLAFHHRP 157 (526) T ss_pred HHHHHHHhCCCceEecCCCCChHHHHHHHHHHHHHhcccCHHHHHHHHH-hhhhhcceeEEEEEeecCCceeEEEeeeec Confidence 9999999999999986432 2223333344333333334677777775 477899999999876644 477899999 Q ss_pred CcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCce Q lcl|Aclame:pro 131 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDS 208 (409) Q Consensus 131 p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~ 208 (409) +.++.+..+.... ..+. ........+++...+..++....+.++|.|.+..|.-.........+..+.+.. ..|. T Consensus 158 ~~~F~~~~~~~~~-l~~~--~~~~~g~~l~~~k~iv~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~F~E~yG~P~ 234 (526) T protein:vir:79 158 QSWFQLNPEDQNE-LRLR--DNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPI 234 (526) T ss_pred ccceEeccCCCcE-EEec--CCCCCceeecCCceEEEeecCCcCCccccchHHHHHHHHHHHHhhHHHHHHHHHHcCCce Confidence 9888765544332 2222 222334556665444445555667889999999998887777766555443332 3455 Q ss_pred eEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCce--eeeccCChhhHHHHHHHHHHHHHHHHH-hcCChhh-cCC Q lcl|Aclame:pro 209 FMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVE--IEPLPKKYVSEDIVASENLTRERVANV-FQLPSIF-LNA 284 (409) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~--~~~l~~~~~d~~~~e~~~~~~~~Ia~~-fgvp~~~-l~~ 284 (409) .+.+++...++++.+++.+.+.++.++++ ++++.|++ +.+.+.. ....|.++.++-.++|+++ +|=.... .+. T Consensus 235 ~igky~~~a~~~ek~~L~~av~~i~~da~--~iiP~~~~ie~~ea~~~-~~~~f~~li~~~d~~Isk~iLGqtlTs~~~~ 311 (526) T protein:vir:79 235 RLGKYPPGTADEEKATLLRAVTGLGHAAA--GIIPETMAIDFQQAAQG-SSEPFLAMMRQSEDAISKAVLGGTLTSTTSQ 311 (526) T ss_pred EEEecCCCCCHHHHHHHHHHHHHHhcCcE--EEecCCceeEEeecCCC-CHHHHHHHHHHHHHHHHHHHhhhhhcccccc Confidence 67788878899999999998888866654 55555554 5554332 3345788889999999988 4422111 111 Q ss_pred cccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcccc-------ceEEecchhhhhhhHHHHHHHHHHHHhc Q lcl|Aclame:pro 285 RSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKN-------RYFKFNVKSYLRADSATQAEVYFKAVRS 357 (409) Q Consensus 285 ~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~-------~~~~~d~~~l~~~d~~~~~~~~~~~~~~ 357 (409) ...++++..+.. .......+.-.++.|++.||+.|+.+.-.-.. .+.+|.++.....|.+++++.+.+++.. T Consensus 312 g~~gS~a~g~vh-~~v~~di~~aDa~~i~~tln~~Li~~l~~~N~~~~~~~~~~p~~~~~~~e~eDl~~~a~~~~~L~~~ 390 (526) T protein:vir:79 312 SGGGAFALGQVH-NEVRHDILASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNV 390 (526) T ss_pred CcchhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCccccceEEeCCCCcccHHHHHHHHHHHHhC Confidence 223344443333 34455577789999999999998765422211 1223444445688899999999999999 Q ss_pred CC-cCHHHHHHHhCCCCCCCCCEEeecccccchhcccccc--c-c--cCCCCCCCCCC Q lcl|Aclame:pro 358 GY-YTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELR--K-S--LKGGDKNVNES 409 (409) Q Consensus 358 g~-~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~--~-~--~~gg~~n~~~~ 409 (409) |+ ++..++|+.+|+|...+++.+..|..-.......... . . ..+...++++. T Consensus 391 G~~i~~~~i~e~~gip~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (526) T protein:vir:79 391 GLEIPSAWVYDKLGIPQPAKNEPVLRPAAQPAILSRQHGQRVAALATIVGPRYGDQQA 448 (526) T ss_pred CCcCCHHHHHHHhCCCCCCCchhhccccCCccccccccccccccccccccccCchhhH Confidence 97 8999999999998665555554332211000000000 0 0 00000111111 No 119 >protein:vir:1986 Length: 512 # NCBI annotation: Hypothetical protein # Family: family:all:313 # MgeID: mge:320 # MgeName: Mu # Cross-refs: genbank:acc:NP_050633;genbank:gi:9633520;genbank:GeneID:2636304 Probab=99.80 E-value=1.8e-18 Score=117.85 Aligned_cols=396 Identities=13% Similarity=0.048 Sum_probs=226.2 Q ss_pred CcchhhhhhhhhhhhcccccCccccc-c-cccccCCCCcccc-----------------------chhHHhhhHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKL-Y-DFSPWKNKSFWGV-----------------------INNTLETNETIFSAI 55 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~v-----------------------~~~~~~~~~~v~~~i 55 (409) |.. |+....+.+......++.... . .+..+......++ ..+...+.+.|.+|+ T Consensus 1 m~~--~~d~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~gltp~~l~~iL~~a~~gd~~~~~~L~~dm~~~D~hi~s~l 78 (512) T protein:vir:19 1 MGR--ILDISGQPFDFDDEMQSRSDELAMVMKRTQEHPSSGVTPNRAAQMLRDAERGDLTAQADLAFDMEEKDTHLFSEL 78 (512) T ss_pred Ccc--eeCCCCCccccccccccccchhcccchhhccccccCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHhhChHHHHHH Confidence 544 233222222111111111110 0 0001111000111 112224678999999 Q ss_pred HHHHHhhccCceeEeeccc--cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC---CCceeEEEeeC Q lcl|Aclame:pro 56 TKLSNSMASLPLKMYEDYK--VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI---YHQPSKLFLLN 130 (409) Q Consensus 56 ~~ia~~ia~lp~~~~~~~~--~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~---~G~~~~l~~l~ 130 (409) +.+...|.+++|.|....+ .........+...-+....+.+++..+. +.+.+|-+++++++.. ...|..+.+++ T Consensus 79 ~~Rk~av~~~~w~I~p~~~~~~~~~~~a~~v~~~l~~~~~f~~~~~~ll-dA~~~G~s~~Ei~w~~~~g~~~~~~~~~r~ 157 (512) T protein:vir:19 79 SKRRLAIQALEWRIAPARDASAQEKKDADMLNEYLHDAAWFEDALFDAG-DAILKGYSMQEIEWGWLGKMRVPVALHHRD 157 (512) T ss_pred HHHHHHHhCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-hhhhhcceeeeeEeeeeCCceeeeeeeeec Confidence 9999999999999975432 2223333333322222224677777775 6888999999998743 34578899999 Q ss_pred CcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCce Q lcl|Aclame:pro 131 PDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDS 208 (409) Q Consensus 131 p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~ 208 (409) +.++....+..+.. .+. ........+++...+..++....+.++|.|.+..|.-.........+..+.+.. ..|. T Consensus 158 ~~~f~~~~~~~~~l-r~~--~~~~~G~~l~~~k~i~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~yG~P~ 234 (512) T protein:vir:19 158 PALFCANPDNLNEL-RLR--DASYHGLELQPFGWFMHRAKSRTGYVGTNGLVRTLIWPFIFKNYSVRDFAEFLEIYGLPM 234 (512) T ss_pred cccceeccCCCcEE-Eec--CCCCCceeecCCceEEEeccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe Confidence 98887665444332 222 222233456666555555555667889999999998887777766665543332 2455 Q ss_pred eEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccC-ChhhHHHHHHHHHHHHHHHHH-hcCChhhcCCcc Q lcl|Aclame:pro 209 FMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPK-KYVSEDIVASENLTRERVANV-FQLPSIFLNARS 286 (409) Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~-fgvp~~~l~~~~ 286 (409) .+.+++...++++.+++.+.+.++.++++ ++++.|++++-+.. +.....|.++.++-.++|+++ +|=.... +... T Consensus 235 ~igky~~~a~~~ek~~L~~al~~~~~~a~--~iiP~~~~ie~~ea~~~~~~~y~~li~~~d~~Isk~iLGqtlTs-~~g~ 311 (512) T protein:vir:19 235 RVGKYPTGSTNREKATLMQAVMDIGRRAG--GIIPMGMTLDFQSAADGQSDPFMAMIGWAEKAISKAILGGTLTT-EAGD 311 (512) T ss_pred eEEecCCCCCHHHHHHHHHHHHHHhhCcE--EEecCCceEEEeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhcc-cccc Confidence 57788888899999999998888766554 55566655444332 233345788899999999987 4422111 1112 Q ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccc---------cceEEecchhhhhhhHHHHHHHHHHHHhc Q lcl|Aclame:pro 287 NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK---------NRYFKFNVKSYLRADSATQAEVYFKAVRS 357 (409) Q Consensus 287 ~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~---------~~~~~~d~~~l~~~d~~~~~~~~~~~~~~ 357 (409) +|+++. .+.........+...++.|++.||++|+.+.-.-. ..++.|+ .....|.+..++.+.++..+ T Consensus 312 ~Gs~a~-~~vh~ev~~di~~aDa~~i~~tln~~li~~l~~~N~~~~~~~~~~p~~~f~--~~e~eDl~~~a~~~~~l~~G 388 (512) T protein:vir:19 312 KGARSL-GEVHDEVRREIRNADVGQLARSINRDLIYPLLALNSDSTIDINRLPGIVFD--TSEAGDITALSDAIPKLAAG 388 (512) T ss_pred cchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEEec--CCChhhHHHHHHHHHHHhcC Confidence 334443 33344556667888999999999999987642211 1234444 44678888899988887643 Q ss_pred CCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 358 GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 358 g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) --++..++|+.+|+|....++....+.-..|-.. ..............++- T Consensus 389 ~~i~~~~i~e~~Gip~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 439 (512) T protein:vir:19 389 MRIPVSWIQEKLHIPQPVGDEAVFTIQPVVPDNG-SQKEAALSAEDIPQEDD 439 (512) T ss_pred CCCCHHHHHHHhCCCCCCCccccccCCCcccccc-ccccccccccCCCchhh Confidence 3489999999999986555544332211111000 00000111111111111 No 120 >protein:vir:99853 Length: 488 # NCBI annotation: portal protein # Family: family:all:313 # MgeID: mge:1480 # MgeName: B3 # Cross-refs: genbank:acc:YP_164068;genbank:gi:56692600;genbank:GeneID:3192581 Probab=99.80 E-value=9.4e-19 Score=119.41 Aligned_cols=387 Identities=10% Similarity=-0.041 Sum_probs=219.7 Q ss_pred Ccchhhhhh-hhhhh-hcccccCcccccccc--cccCCC-CccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc- Q lcl|Aclame:pro 1 MAKENIVTR-IKKKL-IDNWIDQSASKLYDF--SPWKNK-SFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK- 74 (409) Q Consensus 1 M~~~~~~~r-~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~- 74 (409) +.. ..+++ +.... .........+.+... ...... .+.....+..++.+.|.+|++.+...|.+++|.|...++ T Consensus 1 v~~-~~l~~e~at~~~~~d~~~~~~~~l~~~~~~il~~a~~g~~~~y~~l~~D~~i~s~l~~rk~av~~~~w~i~p~~~~ 79 (488) T protein:vir:99 1 MEK-PALGREIATSGDGRDITRPFISGLQVPNDSILQRRGGNDLRVYEEILSDAQVKTVWGQRQLAVVSREWKVEAGGDR 79 (488) T ss_pred CCc-cchhHHHHHHHhhhhhhccccCCCCCCChHHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHHhcCCceEEcCCCC Confidence 000 00110 00000 000000000001000 000000 011112345578899999999999999999999975432 Q ss_pred cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ceeEEEeeCCcceEEEEcCCcceeEEEEEc Q lcl|Aclame:pro 75 VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNPDVVEMLIENQSRELYYSIHA 151 (409) Q Consensus 75 ~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~ 151 (409) .........+...-+ ...+.+++..+. +.+++|-++.++++...| .+..+.+.++.++.+. .++...... .. T Consensus 80 ~~~~~~ae~v~~~l~-~~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d--~~~~l~~~~-~~ 154 (488) T protein:vir:99 80 PIDQAAAEHLEQQLQ-RVGWDRVTSKML-FGVFYGYAVSELIYGRDDRYITLEAIKVRNRRRFRYD--QDGGLRLLT-PN 154 (488) T ss_pred hHHHHHHHHHHHHHh-CCCHHHHHHHHH-hhhhhcceeEEEEEeecCCeeeEeeeeeecccceeec--CCCceEEec-cC Confidence 222223333332222 245778888876 578899999999885543 4678999999877654 444432221 11 Q ss_pred CCCeEEEEc--cceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCceeEEecCC-cCCHHHHHHHH Q lcl|Aclame:pro 152 ATGNKLIVH--NMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDSFMLKYGS-NVSTEKRQQVL 226 (409) Q Consensus 152 ~~g~~~~~~--~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~ 226 (409) ..+....++ ..-++|... ...+.++|.|.+..|.-.........+..+.+.. ..|..+.+++. ..++++.+++. T Consensus 155 ~~~~g~~lp~~~~~i~~~~~-~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~~~a~~~ek~~l~ 233 (488) T protein:vir:99 155 NMFEGEPCPAPYFWHFSTGA-DNDDEPYGLGLAHWLYWPVFFKRNGIKFWLIFLDKFGMPTAVGRYDDKTATPEDKAKLL 233 (488) T ss_pred CCCCccccccCceEEEEeec-CCCCCcccchHHHHHHHHHHHHHhhHHHHHHHHHHcCCceeeeecCCCCCCHHHHHHHH Confidence 222234443 344555544 3446788999999998887777666555433322 23445666664 57888888888 Q ss_pred HHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHh-cCChhhcCCcccCccccHHHHHHHHHHHHH Q lcl|Aclame:pro 227 EDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVF-QLPSIFLNARSNTNFAKNEELNRFYLQHTL 305 (409) Q Consensus 227 ~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~f-gvp~~~l~~~~~~~~~~~e~~~~~~~~~~l 305 (409) +.+.++..+++.+++.+..+++.+.+... ...|.++.++..++|++++ | ..+-....+++++..+-+. ......+ T Consensus 234 ~av~~~~~~~~~viP~~~~ie~~ea~~~~-~~~~~~li~~~d~~Isk~iLG--qtlts~~~~Gs~a~~~vh~-~v~~d~~ 309 (488) T protein:vir:99 234 AALHAIQTDSAIIMPAGMQAELLEAGRSG-TADYKTLHDTMDATIAKVGLG--QVASTQGTPGRLGNDDLQA-DVRLDLV 309 (488) T ss_pred HHHHHHhcCcEEEecCCceeEEeecCCCC-hHHHHHHHHHHHHHHHHHHhh--hhhcccccccchhhHHHHH-HHHHHHH Confidence 88888766655444444444555543332 2357888889999999884 4 2222222334555444444 4556677 Q ss_pred HHHHHHHHHHHHHhhcChhhcc-----ccceEEecchhhhhhhHHHHHHHHHHHHhc-CC-cCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 306 LPIVKQYEEEFNRKLLTKTDRE-----KNRYFKFNVKSYLRADSATQAEVYFKAVRS-GY-YTINDIREWEDLPPVEGGD 378 (409) Q Consensus 306 ~P~~~~ie~~ln~~ll~~~~~~-----~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~-g~-~T~NE~R~~~g~~p~~~gd 378 (409) ...++.|++.+|++|+.+...- ...++.|+ .....|.+++++.+.++++. |+ ++..++|+.+|+|+...++ T Consensus 310 ~aDa~~i~~tln~~li~~l~~~N~~~~~~p~~~~~--~~e~edl~~~a~~~~~l~~~~G~~i~~~~i~e~~Gip~~~~~~ 387 (488) T protein:vir:99 310 KADADLICESFNLGPARWLTEWNFPGAQPPRVYRV--IEEPEDITAKAERDEKVFRMSGFRPTRGYVQETYGVEVESTQA 387 (488) T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCCcCCceeEec--CCCcccHHHHHHHHHHHHhhcCCCCCHHHHHHHcCCCCccccc Confidence 8899999999999887653221 11234444 44678889999999999986 75 8889999999999866555 Q ss_pred EEeecccccchhcccccccccCCCC-CCCCCC Q lcl|Aclame:pro 379 KPLISGDLYPIDTPLELRKSLKGGD-KNVNES 409 (409) Q Consensus 379 ~~~~~~n~~~~~~~~~~~~~~~gg~-~n~~~~ 409 (409) ....+.-. .. ..++.. .+..+. T Consensus 388 ~~~~~~~~---~~------~~~~~~~~~~~~~ 410 (488) T protein:vir:99 388 EATAPTPS---TE------FAEGDQPSDPAAA 410 (488) T ss_pred ccccCCCc---cc------CCCCCCCCCchHH Confidence 43322110 00 011111 111111 No 121 >protein:vir:79063 Length: 491 # NCBI annotation: gp3 # Family: family:all:313 # MgeID: mge:1862 # MgeName: phiE255 # Cross-refs: genbank:acc:YP_001111203;genbank:gi:134288841;genbank:GeneID:4960737 Probab=99.78 E-value=5.5e-18 Score=115.22 Aligned_cols=391 Identities=10% Similarity=0.025 Sum_probs=225.3 Q ss_pred CcchhhhhhhhhhhhcccccCc-----c-----cccccccccCCCC--------ccccchhHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQS-----A-----SKLYDFSPWKNKS--------FWGVINNTLETNETIFSAITKLSNSM 62 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~--------~~~v~~~~~~~~~~v~~~i~~ia~~i 62 (409) |.. +|+..-.+.+......++ + .....+....+.. ...-..+..++.+.|.+|++.+...| T Consensus 1 ~~~-~i~~~~g~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~p~~~~il~~~~~~~~~y~~m~~D~~i~s~l~~Rk~av 79 (491) T protein:vir:79 1 MSK-GLWVSPTEFVKFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAV 79 (491) T ss_pred CCC-eeeCCCCCcccccccchhHHHHHhhhccccccccccccCcchhHHHhhccCCHHHHHHHhhChHHHHHHHHHHHHH Confidence 544 222221111110000000 0 0000111111111 01112345677999999999999999 Q ss_pred ccCceeEeecccccc--chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ceeEEEeeCCcceEEE Q lcl|Aclame:pro 63 ASLPLKMYEDYKVVN--TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNPDVVEML 137 (409) Q Consensus 63 a~lp~~~~~~~~~~~--~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~~~l~~l~p~~v~~~ 137 (409) .+++|.|....+... ..+...|. + ..+.+++..+. +.+.+|-+++++++...| .|..+.++++.++.+. T Consensus 80 ~~~~w~i~~~~~~~~~a~~i~e~l~-~----~~~~~~i~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d 153 (491) T protein:vir:79 80 KALEWGLDRGKAKSRVAKSIADVFA-D----LDLSRIATEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYD 153 (491) T ss_pred hCCCcEEecCCCCHHHHHHHHHHHh-c----CCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeeEEeeeeecccceeec Confidence 999999976443211 22233332 2 34677777775 688899999999876543 3678999999887754 Q ss_pred EcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCceeEEecCC Q lcl|Aclame:pro 138 IENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDSFMLKYGS 215 (409) Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ 215 (409) .++...... .........+++...+++++....+.++|.|.+..|.-.........+..+.+.. ..|..+.+++. T Consensus 154 --~~~~l~l~~-~~~~~~g~~lp~~k~i~~~~~~~~g~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~~G~P~~igky~~ 230 (491) T protein:vir:79 154 --PENQLRFRS-KEHWVQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPR 230 (491) T ss_pred --cCCceEEee-cCCCCCceeecCCCeEEEEecCCCCCcccchhHHHHHHHHHHHHhhHHHHHHHHHHcCCCeEEEecCC Confidence 344433222 2222334667777777776666667789999999999887777766665443332 23556778888 Q ss_pred cCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccC-ChhhHHHHHHHHHHHHHHHHHh-cCChhhcCCcccCccccH Q lcl|Aclame:pro 216 NVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPK-KYVSEDIVASENLTRERVANVF-QLPSIFLNARSNTNFAKN 293 (409) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~f-gvp~~~l~~~~~~~~~~~ 293 (409) ..++++.+++.+.+.++..+++.+++.+..+++.+.+. +.....|.++.++-.++|++++ |=. +....+++++.. T Consensus 231 ~a~~~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGqt---lTt~~~gs~a~~ 307 (491) T protein:vir:79 231 SASDAETNLLLDRLEDMVQDAVAVIPDDSSIEIKEAAGKSGSADVYERLLHFCRGEVSIALLGQN---QTTEATSTRASA 307 (491) T ss_pred CCCHHHHHHHHHHHHHHhcCeEEEecCCceeEEEeccCCCCChhHHHHHHHHHHHHHHHHHhhhh---hccCcccchhhH Confidence 88999999999988887666554444444455555443 2333347788888888888874 311 222234556554 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc---cccceEEecchhhhhhhHHHHHHHHHHHHhcCC-cCHHHHHHHh Q lcl|Aclame:pro 294 EELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR---EKNRYFKFNVKSYLRADSATQAEVYFKAVRSGY-YTINDIREWE 369 (409) Q Consensus 294 e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~---~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~-~T~NE~R~~~ 369 (409) +-+. ......+.-.++.+++.+|+ |+.+.-. .....+.|.+..... +.+.+++...++++.|+ ++.+++|+.+ T Consensus 308 ~vh~-~v~~~i~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~e~ee-~~~~~a~~~~~L~~~G~~i~~~~~~e~~ 384 (491) T protein:vir:79 308 QAGL-EVTDDIRDGDKAIVVEAMNM-LIRWICDLNFDGAARPVFDMWEQEQ-VDEIQAGRDEKLTRAGARFTPAYFKRAY 384 (491) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEeecCcCc-hhHHHHHHHHHHHhCCCccCHHHHHHHh Confidence 4433 34555677789999999985 6554211 122234565554332 33567899999999997 9999999999 Q ss_pred CCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 370 DLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 370 g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |+|+.+.++....+..-.+... .........+.+..|. T Consensus 385 Gip~~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 422 (491) T protein:vir:79 385 NLQDGDLDERPLPVSAVDAVGA--ASFAEFEAPDQDALDA 422 (491) T ss_pred CCCCCCCCccccCcCccccccc--ccccccCCCCCcchHH Confidence 9997665554332111100000 0000000011111111 No 122 >protein:vir:79538 Length: 502 # NCBI annotation: putative portal protein # Family: family:all:47 # MgeID: mge:1871 # MgeName: cdtI # Cross-refs: genbank:acc:YP_001272517;genbank:gi:148609386;genbank:GeneID:5204374 Probab=99.77 E-value=7.1e-19 Score=120.08 Aligned_cols=406 Identities=12% Similarity=0.078 Sum_probs=223.1 Q ss_pred Ccchh-hhhhhh---------hh-hhcccccCcccccccccccCCCCcc----------ccchhHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MAKEN-IVTRIK---------KK-LIDNWIDQSASKLYDFSPWKNKSFW----------GVINNTLETNETIFSAITKLS 59 (409) Q Consensus 1 M~~~~-~~~r~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~v~~~i~~ia 59 (409) |.+.. +++-+. .+ ....+-.........|-........ .-+++-+..++.+..+|+.+. T Consensus 1 mn~~dr~i~~~sP~~~~~R~~ar~~~~~y~aa~~~r~~~~~~~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~ 80 (502) T protein:vir:79 1 MAILDDVIGVFSPGWKAARLRSRAVIQAYEAVKTTRTHKARRENRTADQLSQYGAVSLREQARYLDNNHDLVIGVFDKLE 80 (502) T ss_pred CchHhhHHhhcChHHHHHHHhhHHHHhhccccCcccccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH Confidence 66632 111111 11 1111222222233332221111111 113445778999999999666 Q ss_pred HhhccC-ceeEee----ccccccchhhhh-------h--hccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC----- Q lcl|Aclame:pro 60 NSMASL-PLKMYE----DYKVVNTEVSDL-------L--TVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY----- 120 (409) Q Consensus 60 ~~ia~l-p~~~~~----~~~~~~~~~~~~-------L--~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~----- 120 (409) +.+-.. -+.+.. .+.....++... . +......+++..+...++..++..|++|+.+.+... T Consensus 81 ~nvVG~ggi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~~~~~ 160 (502) T protein:vir:79 81 ERVVGKNGIIVEPHPVLRNGAIARDLAAEIRTRWSEWSVSPEVTGQFTRPMLERLMLRTWLRDGEVFAQMVSGRINSLTP 160 (502) T ss_pred HhhccCCceeeeeccCCCChhHHHHHHHHHHHHHHHhhcCcCccccCCHHHHHHHHHHHHHhCCceEEEEeecccCccCC Confidence 665432 333221 111111122211 1 223444578999999999999999999998866442 Q ss_pred --CceeEEEeeCCcceE------------EEEcCCcceeEEEEEcC------CCeEEEEccceEEEecCcCccccccccc Q lcl|Aclame:pro 121 --HQPSKLFLLNPDVVE------------MLIENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASNMVQGIS 180 (409) Q Consensus 121 --G~~~~l~~l~p~~v~------------~~~~~~~~~~~~~~~~~------~g~~~~~~~~~vih~~~~~~~~~~~G~s 180 (409) +.+..|..|+|+++. |..|..|....|.+... ......+++++|+|+..+...++.+|+| T Consensus 161 g~~~~l~lq~iepd~l~~~~~~~~~i~~GVe~d~~Gr~~aY~i~~~hPgd~~~~~~~rvpA~~vlH~f~~~r~gQ~RGis 240 (502) T protein:vir:79 161 SAGVHFWLEALEPDFIPMTSDESNRLNQGVFVDDWGRPEKYLVYKSRPVSGRQMETKEVDAERMLHLKFVRRLHQMRGTS 240 (502) T ss_pred CcccceEEEEecchhcCCCCCCCCeeEeeeEECCCCceEEEEEeecCCCCCcccceeEechhheEEeecccCCccccCCc Confidence 236788999997764 44677788877776431 2344679999999999887778999999 Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhcCCCceeEEecCCc-CCHHHHHHHHHHHHHHhcCCCcee-ecCCCceeeeccCCh Q lcl|Aclame:pro 181 PIDVLKNTTDFDNAVRTFN---LTEMQKPDSFMLKYGSN-VSTEKRQQVLEDFKQYYEENGGIL-FQEPGVEIEPLPKKY 255 (409) Q Consensus 181 p~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-vl~~g~~~~~l~~~~ 255 (409) .+..+...+.-........ .+..+.-..++....+. ...+....-... ....-..|.++ .|..|.+++..+.+. T Consensus 241 ~lapvl~~l~~l~~~~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~-~~~~l~pG~i~~~L~pGe~i~~~~p~~ 319 (502) T protein:vir:79 241 LLSGVLIRLSALKEYEDSELTAARIAAALGMYIRKGDGQSYEPDGNGSKENE-RELTIQPGIIYDDLKPGEEIGMVKSDR 319 (502) T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHhhhheeeeecCCCcccccccCCCCCcc-ccccccCCccccccCCCceeeeeCCCC Confidence 9999887765444333222 22222222222221111 000000000000 00001245544 589999999888766 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHH-----------HHHHHHHHHHHH-HHHHHHHhhcCh Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRF-----------YLQHTLLPIVKQ-YEEEFNRKLLTK 323 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~-----------~~~~~l~P~~~~-ie~~ln~~ll~~ 323 (409) ....|.+..+...+.||+.+|||...|.+..++|||+....... |+..-+.|+.+. +++++-.-.++. T Consensus 320 p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~nySs~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~~l~~a~l~G~i~~ 399 (502) T protein:vir:79 320 PNPNLETFRNGQLRAVAAGSRLSFSSTARNYNGTYSAQRQELVESTDGYLILQDWFIGAVTRPMYRAWLKQAVASGVIRL 399 (502) T ss_pred CCCCHHHHHHHHHHHHHhhcCCCHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC Confidence 66778899999999999999999999977666788877554333 333344443332 344444333321 Q ss_pred h-h--ccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC----------CEEeecccccchh Q lcl|Aclame:pro 324 T-D--REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG----------DKPLISGDLYPID 390 (409) Q Consensus 324 ~-~--~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g----------d~~~~~~n~~~~~ 390 (409) . . ......+.|-.-.....|..+.+++...++++|+.|.-++-.+.|.++-+-- +++=++....|.. T Consensus 400 p~~~~~~~~~~~~W~~p~~~~iDP~Ke~~a~~~~i~~Gl~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~ 479 (502) T protein:vir:79 400 PRDLDRSSLYTAVYSGPVMPWIDPVKEAEAWKIQIRGGAATESDWVRAGGRNPDDVKRRRKAEIDENRKLDLVFDTDPAS 479 (502) T ss_pred CCCCCchhhcceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCC Confidence 1 0 1111123444455667899999999999999999999998888888874311 1111222222211 Q ss_pred c------ccccccccCCCCCCCCC Q lcl|Aclame:pro 391 T------PLELRKSLKGGDKNVNE 408 (409) Q Consensus 391 ~------~~~~~~~~~gg~~n~~~ 408 (409) . +.+.+....++++++ | T Consensus 480 ~~~~~~~~~~~~e~~~~~~~~e-~ 502 (502) T protein:vir:79 480 DKGGSSAATKRQEPQHTDDQSE-E 502 (502) T ss_pred CCCCCCCCCCCCCCCCCCCCCC-C Confidence 1 111111112222222 2 No 123 >protein:vir:107880 Length: 491 # NCBI annotation: gp29 # Family: family:all:313 # MgeID: mge:1565 # MgeName: BcepMu # Cross-refs: genbank:acc:YP_024702;genbank:gi:48696939;genbank:GeneID:2845968 Probab=99.77 E-value=5.9e-18 Score=115.05 Aligned_cols=388 Identities=11% Similarity=0.009 Sum_probs=222.5 Q ss_pred CcchhhhhhhhhhhhcccccCc-----c--ccccc-cccc-CCCCcc---------ccchhHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQS-----A--SKLYD-FSPW-KNKSFW---------GVINNTLETNETIFSAITKLSNSM 62 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~-----~--~~~~~-~~~~-~~~~~~---------~v~~~~~~~~~~v~~~i~~ia~~i 62 (409) |.. +|+..-.+.+...-.+++ + ....+ ++.. ....-. .-..+..++.+.|.+|++.+...| T Consensus 1 m~~-~i~~~~g~p~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~iLr~~~~~~~~y~~m~~D~~i~s~l~~Rk~av 79 (491) T protein:vir:10 1 MSK-GLWVSPTEFVTFGEPDKSLSSQIATRARSIDFFALGMYLPNPDPVLKALGKDIRVYRELRADAHVGGCVRRRKAAV 79 (491) T ss_pred CCC-ceeCCCCCccCcccCChHHHHHHHhhhcccccccccCCccchHHHHHhcCCCHHHHHHHhhChHHHHHHHHHHHHH Confidence 544 222211111000000000 0 00000 0000 000001 112244667899999999999999 Q ss_pred ccCceeEeecccc-cc-chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ceeEEEeeCCcceEEE Q lcl|Aclame:pro 63 ASLPLKMYEDYKV-VN-TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSKLFLLNPDVVEML 137 (409) Q Consensus 63 a~lp~~~~~~~~~-~~-~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~~~l~~l~p~~v~~~ 137 (409) .+++|.|....+. .. ..+...|. + ..+.+++..+. +.+++|.++.++++...| .+..+.++++.++.+. T Consensus 80 ~~~~w~i~~~~~~~~~~e~v~e~l~-~----~~~~~~l~~~l-da~~~G~s~~Ei~w~~~~g~~~~~~l~~r~~~~f~~d 153 (491) T protein:vir:10 80 KALEWGLDRGKAKSRVAKSIADVFA-D----LDLSRIVTEML-DAVLYGYQPMEITWGKVGNYIVPIDVVGKPADWFVYD 153 (491) T ss_pred hCCCcEEecCCCCHHHHHHHHHHHh-c----CCHHHHHHHHH-HhhhhcceeEEEEEeecCCeeEEEEeeeecccceeec Confidence 9999999754332 11 22233333 2 34778888876 688999999999886544 3678999999887754 Q ss_pred EcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCceeEEecCC Q lcl|Aclame:pro 138 IENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDSFMLKYGS 215 (409) Q Consensus 138 ~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~ 215 (409) .++...+ ...........+++...+++++....+.++|.|.+..|.-.........+..+.+.. ..|..+.+++. T Consensus 154 --~~~~l~~-~~~~~~~~g~~l~~~k~i~~~~~~~~~~p~g~gLl~~~~w~~~fK~~~~~~w~~f~E~yG~P~~igky~~ 230 (491) T protein:vir:10 154 --PENQLRF-RSKDHWMQGEELPARKFLVPRQEATYLNPYGFPDLSMCFWPTTFKKGGLKFWVQFTEKYGSPMLVGKHPR 230 (491) T ss_pred --cCCceEE-ecCCCCCCcceecCCCEEEEEecCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCC Confidence 3344322 222222344667777666666665667789999999999888777766655443322 33556778888 Q ss_pred cCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCCh-hhHHHHHHHHHHHHHHHHH-hcCChhhcCCcccCccccH Q lcl|Aclame:pro 216 NVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKY-VSEDIVASENLTRERVANV-FQLPSIFLNARSNTNFAKN 293 (409) Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~-~d~~~~e~~~~~~~~Ia~~-fgvp~~~l~~~~~~~~~~~ 293 (409) ..++++.+++.+.+.++..+++.+++.+..+++.+.+.+. ....|.++.++-.++|+++ +|= -+....+++++.. T Consensus 231 ~a~~~ek~~l~~al~~~~~~a~~viP~~~~ie~~ea~~~~g~~~~y~~li~~~d~~Isk~iLGq---tlTt~~~gs~a~~ 307 (491) T protein:vir:10 231 SASDGEKNLLLDCLEDMVQDAVAVVPDDSSIEIKEAAGKTGSADVYERLLHFCRGEVSIALLGQ---NQTTEATSTRASA 307 (491) T ss_pred CCCHHHHHHHHHHHHHHhcCcEEEecCCceeEEEecCCCCCChhHHHHHHHHHHHHHHHHHhhh---hcccCcccchhHH Confidence 8899999999999888866655444434444555444332 2334778888888888887 342 1222234555544 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh---ccccceEEecchhhhhhhHHHHHHHHHHHHhcCC-cCHHHHHHHh Q lcl|Aclame:pro 294 EELNRFYLQHTLLPIVKQYEEEFNRKLLTKTD---REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGY-YTINDIREWE 369 (409) Q Consensus 294 e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~---~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~-~T~NE~R~~~ 369 (409) +.+. ......+.-.++.+++.+|+ |+.+.- .....+.+|.+.... .+.+.+++...++++.|+ ++..++|+.+ T Consensus 308 ~vh~-~v~~di~~~D~~~i~~tln~-li~~l~~~N~~~~~~p~f~~~~~~-e~~~~~a~~~~~L~~~G~~i~~~~i~e~~ 384 (491) T protein:vir:10 308 QAGL-EVTDDIRDGDKAVVSEAMNM-LIRWICDLNFDGADRPVFDMWEQE-QVDEIQAGRDQKLTQAGARFTPAYFKRAY 384 (491) T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCCcceEEecCcC-chhHHHHHHHHHHHhCCCcCCHHHHHHHh Confidence 4433 34555667788999999985 664321 111223344444433 344778999999999997 8999999999 Q ss_pred CCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 370 DLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 370 g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |+|+-+.++...-.....+. .. .........+++. T Consensus 385 Gip~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~ 419 (491) T protein:vir:10 385 NLQDGDLDERPLPVSAVDTV--GA---ASFAEFEAPDQDA 419 (491) T ss_pred CCCCCCcCccccccCCCCCc--cc---ccccccCCCCCCc Confidence 99976555433211100000 00 0000011111111 No 124 >protein:vir:389 Length: 530 # NCBI annotation: gp4 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046899;genbank:gi:9630468;genbank:GeneID:1261643 Probab=99.73 E-value=7.9e-18 Score=114.35 Aligned_cols=405 Identities=9% Similarity=0.055 Sum_probs=222.2 Q ss_pred Ccchhhhh---hhhhhhhcccc-cC--cccccccccccCCCCcc----------ccchhHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MAKENIVT---RIKKKLIDNWI-DQ--SASKLYDFSPWKNKSFW----------GVINNTLETNETIFSAITKLSNSMAS 64 (409) Q Consensus 1 M~~~~~~~---r~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~v~~~i~~ia~~ia~ 64 (409) |..--+++ |-.......+- .. .......|.+....... ..+++-+..++.+..||+.+.+.+-. T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~w~~~~~s~~~~i~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG 80 (530) T protein:vir:38 1 MKIPSLVGPDGKTSLREYAGYHGGGGGFGGQLRGWNPPSESADAALLPNYSRGNARADDLVRNNGYAANAVQLHQDHIVG 80 (530) T ss_pred CccceeecCccccchHHHhhhhcccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhC Confidence 44322222 11111111111 11 11122233222111111 12344577899999999988777766 Q ss_pred CceeEeecc--------ccccchh-------hhhhhcccc------CCCCHHHHHHHHHHHHHhcCCeEEEeeecCC-Cc Q lcl|Aclame:pro 65 LPLKMYEDY--------KVVNTEV-------SDLLTVSPN------NSLSSFDFINQIETIRNEKGNAYVLIERDIY-HQ 122 (409) Q Consensus 65 lp~~~~~~~--------~~~~~~~-------~~~L~~~pn------~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~-G~ 122 (409) ..|.+.-+. +....++ +...-..|+ ..+++.++...++..++..|++|+.+.+... |. T Consensus 81 ~Gi~~~~~p~~~~l~~~~~~~~~~~~~ie~~w~~W~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~~~~~~g~ 160 (530) T protein:vir:38 81 SFFRLSYRPSWRYLGINEEDSRAFSRDVEAAWNEYAEDDFCGIDAERKRTFTMMIREGVAMHAFNGELCVQATWDSDSTR 160 (530) T ss_pred CCceeeeccchhhcCCCHhHHHHHHHHHHHHHHHhhcCCCcEEeeeccCCHHHHHHHHHHHHhhCCceEEEeeeccCCCC Confidence 677665331 1111111 112222333 3578999999999999999999998886543 32 Q ss_pred --eeEEEeeCCcceE--------------EEEcCCcceeEEEEEcC--CCe----------EEEEccceEEEecCcCccc Q lcl|Aclame:pro 123 --PSKLFLLNPDVVE--------------MLIENQSRELYYSIHAA--TGN----------KLIVHNMDMLHFKHIVASN 174 (409) Q Consensus 123 --~~~l~~l~p~~v~--------------~~~~~~~~~~~~~~~~~--~g~----------~~~~~~~~vih~~~~~~~~ 174 (409) +..|..|+|+++. |..|..|....|.+... .|. ...++.++|+|+......+ T Consensus 161 ~~~~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~vlH~f~~~r~g 240 (530) T protein:vir:38 161 LFRTQFKMVSPKRVSNPNNIGDTRNCRAGVKINDSGAALGYYVSDDGYPGWMAQNWTYIPRELPGGRPSFIHVFEPMEDG 240 (530) T ss_pred ccceEEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEEeeccCCCccccccceeeeeeccChhHeEeeccccCCC Confidence 5677888876553 33466677777766421 111 1235567999999888779 Q ss_pred ccccccHHHHHHHHHHHHHHHHHHH---HHhcCCCceeEEecCC-----------cCCHHHHHHHHHHHHH---Hh---- Q lcl|Aclame:pro 175 MVQGISPIDVLKNTTDFDNAVRTFN---LTEMQKPDSFMLKYGS-----------NVSTEKRQQVLEDFKQ---YY---- 233 (409) Q Consensus 175 ~~~G~sp~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~---~~---- 233 (409) +.+|+|.+..+...+.-........ .+..+.- .++++.+. ...+++.+.+...... .+ T Consensus 241 Q~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~-a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (530) T protein:vir:38 241 QTRGANAFYSVMEQMKMLDTLQNTQLQSAIVKAMY-AATIESELDTQSAMDFILGADNKEQQSKLTGWLGEMAAYYSAAP 319 (530) T ss_pred cccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhh-eeeeeccCCccccccccccCCcccccccccccchhhhhcccccc Confidence 9999999998887765443332222 1111111 11222110 1111111111111111 00 Q ss_pred --cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCC-cccCccccHHHHHH-----------H Q lcl|Aclame:pro 234 --EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA-RSNTNFAKNEELNR-----------F 299 (409) Q Consensus 234 --~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~-~~~~~~~~~e~~~~-----------~ 299 (409) -+.|.+..|..|.+++..+.+-...+|.+..+...+.||+.+|||...|.+ ....|||+..+... . T Consensus 320 ~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~f~~~~lr~iaaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~ 399 (530) T protein:vir:38 320 VRLGGARVPHLLPGDSLNLQSAQDTDNGYSTFEQSLLRYIAAGLGVSYEQLSRNYSQMSYSTARASANESWAYFMGRRKF 399 (530) T ss_pred eeccCceeeecCCCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH Confidence 146778889999999988887666778899999999999999999998854 45668886654433 3 Q ss_pred HHHHHHHHHHH-HHHHHHHHhhcChhhc---------cccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh Q lcl|Aclame:pro 300 YLQHTLLPIVK-QYEEEFNRKLLTKTDR---------EKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE 369 (409) Q Consensus 300 ~~~~~l~P~~~-~ie~~ln~~ll~~~~~---------~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~ 369 (409) +...-+.|+.. -+++++.+-.++.... ..-....+-.-.....|..+.+++...++++|+.|.-++-.+. T Consensus 400 ~~~~~~~pi~~~wl~~av~~G~i~~p~~~~~~~~~~~~a~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~ 479 (530) T protein:vir:38 400 VASRQACQMFLCWLEEAIVRRVVTLPSKARFSFQEARTAWGNANWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKR 479 (530) T ss_pred HHHHHhhHHHHHHHHHHHHcCCccCCCCCCCCchhhHHhhhceeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHc Confidence 33333444333 3555555544431100 0011234445556677999999999999999999999998888 Q ss_pred CCCCCCCC----------CEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 370 DLPPVEGG----------DKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 370 g~~p~~~g----------d~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |.++-+-- +++=++....+...... ....++.+++|+ T Consensus 480 G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~---~~~~~~~~~~d~ 526 (530) T protein:vir:38 480 GDDYQEIFAQQVRESMERRAAGLNPPAWAAAAFEA---GVKKSNEEEQDG 526 (530) T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCCcccccCC---CCCCCCCCCCCC Confidence 98874311 11111111111111111 111122222222 No 125 >protein:vir:3420 Length: 533 # NCBI annotation: capsid component # Family: family:all:47 # MgeID: mge:70 # MgeName: lambda # Cross-refs: genbank:acc:NP_040583;genbank:gi:9626247;genbank:GeneID:2703526 Probab=99.72 E-value=1.3e-17 Score=113.16 Aligned_cols=405 Identities=9% Similarity=0.062 Sum_probs=220.9 Q ss_pred Ccchhhhhhhhhhhhccccc-C--cccccccccccCCCCcc----------ccchhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWID-Q--SASKLYDFSPWKNKSFW----------GVINNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~----------~v~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) ++....-.|- ....+-. . .......|.+....... ..+++-+..++.+..||+.+.+.+-...| T Consensus 10 ~~~~~~~~~~---~~~~y~~~a~~~~~~~~~w~p~~~s~~~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~nvVG~Gi 86 (533) T protein:vir:34 10 LGPDGMTSLR---EYAGYHGGGSGFGGQLRSWNPPSESVDAALLPNFTRGNARADDLVRNNGYAANAIQLHQDHIVGSFF 86 (533) T ss_pred hcccccchHH---HHHhhhhccCCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhCCCc Confidence 2222221111 0011111 1 11112233222211111 11334577899999999987777755566 Q ss_pred eEeecc--------ccccchh-------hhhhhccc------cCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ce Q lcl|Aclame:pro 68 KMYEDY--------KVVNTEV-------SDLLTVSP------NNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QP 123 (409) Q Consensus 68 ~~~~~~--------~~~~~~~-------~~~L~~~p------n~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~ 123 (409) .+.-+- +....++ +....+.+ ...+++.++...++..++..|++|+.+.+...+ .+ T Consensus 87 ~~~~~p~~~~lg~~~~~~~~~~~~ie~~w~~w~~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~f~~~~~~~~~g~~~~ 166 (533) T protein:vir:34 87 RLSHRPSWRYLGIGEEEARAFSREVEAAWKEFAEDDCCCIDVERKRTFTMMIREGVAMHAFNGELFVQATWDTSSSRLFR 166 (533) T ss_pred eeeeccchhhcCCChhHHHHHHHHHHHHHHHhhcCccceeccccccCHHHHHHHHHHHHHhCCceEEEeeeccCCCCccc Confidence 664321 1111122 12222233 344689999999999999999999988765442 25 Q ss_pred eEEEeeCCcceE--------------EEEcCCcceeEEEEEcC--CC----------eEEEEccceEEEecCcCcccccc Q lcl|Aclame:pro 124 SKLFLLNPDVVE--------------MLIENQSRELYYSIHAA--TG----------NKLIVHNMDMLHFKHIVASNMVQ 177 (409) Q Consensus 124 ~~l~~l~p~~v~--------------~~~~~~~~~~~~~~~~~--~g----------~~~~~~~~~vih~~~~~~~~~~~ 177 (409) ..|..|+|+++. |..|..|....|.+... .| ....++.++|+|+......++.+ T Consensus 167 ~~lq~ie~d~l~~~~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~~~~~~~~~~~~~~~~~~~v~a~~VlH~f~~~r~gQ~R 246 (533) T protein:vir:34 167 TQFRMVSPKRISNPNNTGDSRNCRAGVQINDSGAALGYYVSEDGYPGWMPQKWTWIPRELPGGRASFIHVFEPVEDGQTR 246 (533) T ss_pred eEEEEechhhcCCCCCCCCCCceEeeeEECCCCCeEEEEEeecCCCCccccccceeeeeeccChhHeeeeccccCCCccc Confidence 577777776543 33456677777766421 11 12235678999999888789999 Q ss_pred cccHHHHHHHHHHHHHHHHHHH---HHhcCCCceeEEecC-----------CcCCHHHHHHHHHHH---HHHh------c Q lcl|Aclame:pro 178 GISPIDVLKNTTDFDNAVRTFN---LTEMQKPDSFMLKYG-----------SNVSTEKRQQVLEDF---KQYY------E 234 (409) Q Consensus 178 G~sp~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~---~~~~------~ 234 (409) |+|.+..+...+.-........ .+..+.- .++++.+ +....++.+.+.... ...+ - T Consensus 247 Gis~lapvl~~l~~l~~y~dael~~a~i~A~~-a~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 325 (533) T protein:vir:34 247 GANVFYSVMEQMKMLDTLQNTQLQSAIVKAMY-AATIESELDTQSAMDFILGANSQEQRERLTGWIGEIAAYYAAAPVRL 325 (533) T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhh-eeeeecCCCcccccccccCCCcccccccccccchhhhhccCcceeec Confidence 9999998887765443332222 1111111 2222211 111111112111111 1111 1 Q ss_pred CCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHHH-----------HHHHHH Q lcl|Aclame:pro 235 ENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEEL-----------NRFYLQ 302 (409) Q Consensus 235 ~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~-----------~~~~~~ 302 (409) +.|.+..|..|.+++..+.+-...+|.+..+...+.||+.+|||.+.|.+. ...|||+.... +..|+. T Consensus 326 ~pG~i~~L~pGe~i~~~~~~~p~~~~~~f~~~~lr~iAaglGi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~ 405 (533) T protein:vir:34 326 GGAKVPHLMPGDSLNLQTAQDTDNGYSVFEQSLLRYIAAGLGVSYEQLSRNYAQMSYSTARASANESWAYFMGRRKFVAS 405 (533) T ss_pred cCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH Confidence 367788899999999888876677888999999999999999999988554 56788877443 233444 Q ss_pred HHHHHHHHH-HHHHHHHhhcChhh-------cc--ccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCC Q lcl|Aclame:pro 303 HTLLPIVKQ-YEEEFNRKLLTKTD-------RE--KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLP 372 (409) Q Consensus 303 ~~l~P~~~~-ie~~ln~~ll~~~~-------~~--~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~ 372 (409) ..+.|+.+. +++++-.-.++... .. .-..+.|-.-.....|..+.+++...++++|+.|.-|+-.+.|.+ T Consensus 406 ~~~~pi~~~wl~~ail~G~i~~p~~~~~~~~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~s~~~~~a~~G~D 485 (533) T protein:vir:34 406 RQASQMFLCWLEEAIVRRVVTLPSKARFSFQEARSAWGNCDWIGSGRMAIDGLKEVQEAVMLIEAGLSTYEKECAKRGDD 485 (533) T ss_pred HHHHHHHHHHHHHHHHcCcccCCCccCCCchhhHHhhhceeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCC Confidence 444554443 44444443333110 00 011245555566778999999999999999999999998888988 Q ss_pred CCCCC----------CEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 373 PVEGG----------DKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 373 p~~~g----------d~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +-+-- +++=++....|.........+...++..++.+ T Consensus 486 ~~ev~~q~a~e~~~~~~~gl~~~~~~~~~~~s~~~~~~~~~~~~~~~ 532 (533) T protein:vir:34 486 YQEIFAQQVRETMERRAAGLKPPAWAAAAFESGLRQSTEEEKSDSRA 532 (533) T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcCccCCCCCCCCCCcccCCC Confidence 75321 12112222222111111100111111111111 No 126 >protein:vir:79511 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1870 # MgeName: P74-26 # Cross-refs: genbank:acc:YP_001468055;genbank:gi:157265497;genbank:GeneID:5600628 Probab=99.70 E-value=3.4e-16 Score=105.36 Aligned_cols=393 Identities=11% Similarity=0.017 Sum_probs=219.7 Q ss_pred CcchhhhhhhhhhhhcccccCccc---------ccccccccCCCCcccc--------chhHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSAS---------KLYDFSPWKNKSFWGV--------INNTLETNETIFSAITKLSNSMA 63 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~v--------~~~~~~~~~~v~~~i~~ia~~ia 63 (409) |++.+--.+--........+.... ....+.++.......+ ..+..++.+.|.+|++.+...|. T Consensus 1 m~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~ly~~m~~D~hi~s~l~~Rk~av~ 80 (448) T protein:vir:79 1 MAKRGRKPKELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLLVYHKMLSDGTVKNALNYIFGRIR 80 (448) T ss_pred CCCCCCCCccccCcccccccccchhhhhhhhhhcccccccccccchhHhhccccchHHHHHHhhChHHHHHHHHHHHHHh Confidence 777422211000000000000000 0001111111111111 23446678999999999999999 Q ss_pred cCceeEeecccc-ccchhhhhhh---cccc---CCCCHHHHHHHHHHHHHhcCCeEEEeeec--CCCc--eeEEEeeCCc Q lcl|Aclame:pro 64 SLPLKMYEDYKV-VNTEVSDLLT---VSPN---NSLSSFDFINQIETIRNEKGNAYVLIERD--IYHQ--PSKLFLLNPD 132 (409) Q Consensus 64 ~lp~~~~~~~~~-~~~~~~~~L~---~~pn---~~~s~~~f~~~~~~~~l~~G~a~~~~~~~--~~G~--~~~l~~l~p~ 132 (409) +++|.|...++. .....+..+. ..+. ...++.+++..+. +.+++|-+++++++. ..|. +..+.+.++. T Consensus 81 ~~~w~v~p~~~~~~~~~~ae~v~~~l~~~~~~~~~~~f~~~~~~~l-da~~~G~s~~Eivw~~~~~g~~~~~~l~~r~~~ 159 (448) T protein:vir:79 81 SAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYE-NAYIYGMAAGEIVLTLGADGKLILDKIVPIHPF 159 (448) T ss_pred cCCceEecCCCCHHHHHHHHHHHHHhhhhhhhhccCCHHHHHHHHH-HhhhhcceeEEEEeeecCCCceecccccccCCc Confidence 999999753322 1122222221 1222 1235666666664 688999999999874 3453 5567777776 Q ss_pred ceE-EEEcCCcceeEEEEEcC------CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHh--- Q lcl|Aclame:pro 133 VVE-MLIENQSRELYYSIHAA------TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTE--- 202 (409) Q Consensus 133 ~v~-~~~~~~~~~~~~~~~~~------~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~--- 202 (409) .+. ...+.++.......... ......++..-++|..+. ..+.++|.|.+..|.-.........+..+.+ T Consensus 160 ~~~~f~~~~d~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f~E~ 238 (448) T protein:vir:79 160 NIDEVLYDEEGGPKALKLSGEVKGGSQFVSGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALILLINHGLER 238 (448) T ss_pred cccceeeecCCceEEeecCCcccccccCCCccccccceEEEEecC-ccCCcccchhHHHHHHHHHHHHHHHHHHHHHHHH Confidence 432 33444454433322211 112345677888888654 4567889999999998777777666654433 Q ss_pred cCCCceeEEecCCc--CCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChh Q lcl|Aclame:pro 203 MQKPDSFMLKYGSN--VSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSI 280 (409) Q Consensus 203 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~ 280 (409) ++. |..+.+++.. .++++.+++.+...+...+....++++.|++++-++......++.++.++-.++|+++.-= .. T Consensus 239 yG~-P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~~~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLG-qt 316 (448) T protein:vir:79 239 FMI-GVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGI-DF 316 (448) T ss_pred cCC-ceEEEecCCCCCcCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCcccHHHHHHHHHHHHHHHHhh-hh Confidence 333 3445665543 3466777777777666544444677888888776665555556778888989999988531 11 Q ss_pred hcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc-----c-ccceEEecchhhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 281 FLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR-----E-KNRYFKFNVKSYLRADSATQAEVYFKA 354 (409) Q Consensus 281 ~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~-----~-~~~~~~~d~~~l~~~d~~~~~~~~~~~ 354 (409) +-...+.++++.............+.-.++.|++.||+.|+.+.-. . ...++.|+ .....|+++.++.+.++ T Consensus 317 lTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~li~~l~~lNfg~~~~~P~~~f~--~~e~~Dl~~~a~~~~~l 394 (448) T protein:vir:79 317 NTVQLNMGVQAINIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPSATRFPRLTFE--MEERNDFSAAANLMGML 394 (448) T ss_pred hccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcEEEec--CCChHHHHHHHHHhhhh Confidence 1112222333333333334455667789999999999998875411 1 11244554 45677889999999999 Q ss_pred HhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 355 VRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 355 ~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +..+....+-+|+.+|+|.-..++....+. ... ....+.....|+ T Consensus 395 ~~~~~~~~~~~~~~~~~p~~~~~~~~~a~~---------~~~-~~~~~~~~~~~~ 439 (448) T protein:vir:79 395 INAVKDSEDIPTELKALIDALPSKMRRALG---------VVD-EVREAVRQPADS 439 (448) T ss_pred hccchhhHHHHHHhhcCCCCCCCccccccC---------CCC-cccccccCCccc Confidence 988765555678888998432233211111 000 111112233333 No 127 >protein:vir:95254 Length: 488 # NCBI annotation: Phage conserved protein # Family: family:all:2372 # MgeID: mge:1561 # MgeName: Felix 01 # Cross-refs: genbank:acc:NP_944885;genbank:gi:158267601;genbank:GeneID:2744039 Probab=99.68 E-value=4.3e-16 Score=104.81 Aligned_cols=402 Identities=10% Similarity=0.038 Sum_probs=211.7 Q ss_pred Ccchhhh---------hhhhhhhhcccccCcccccccccccCCC-CccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKENIV---------TRIKKKLIDNWIDQSASKLYDFSPWKNK-SFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~~~~---------~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |.-.... .++.....+++...-.. .+...... ....+ .+..+..+.|.+|++.+...|.+++|.|. T Consensus 1 ~~~~~~~~~gl~p~rl~~i~~~~~~~~~~~~~~---~~~~~Lr~~~~~~l-y~~m~~D~hi~s~l~~Rk~av~~~~w~v~ 76 (488) T protein:vir:95 1 MADITETQESLPPFRMGEVGSLGLKVKNGRIYE---EPRQALRFPESIKT-FQLMMRDPAVAASVNIIKMFVRKVNWRFV 76 (488) T ss_pred CCCccccCCCCCHHHHHHHHHHhhccccchhhc---cchhhhcccchHHH-HHHHhhChHHHHHHHHHHHHHhcCCceEe Confidence 4432111 11111101111111000 11111111 11222 34556789999999999999999999997 Q ss_pred eccccc----cchhhhhhhcccc-CCCCHHHHHHHHHHHHHhcCCeEEEeeecC-------------CC--ceeEEEeeC Q lcl|Aclame:pro 71 EDYKVV----NTEVSDLLTVSPN-NSLSSFDFINQIETIRNEKGNAYVLIERDI-------------YH--QPSKLFLLN 130 (409) Q Consensus 71 ~~~~~~----~~~~~~~L~~~pn-~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~-------------~G--~~~~l~~l~ 130 (409) ..+... .......+...-. -..++.+++..+. +.+.+|-+++++++.. +| .+..+.+.+ T Consensus 77 p~~~~~~d~~~~~~a~~v~~~l~~~~~~~~~~i~~~l-da~~~G~s~~Eivw~~~~~~~~~~~~~~~dg~~~~~~i~~Rp 155 (488) T protein:vir:95 77 PPKGKEQDPKMLERADFFNSLMDDMEHDWADFINSVM-SFCTYGFCVNEKVYKKRQGKKGKYQSKFDDGLIGWAKLPIRN 155 (488) T ss_pred cCCCCchhHHHHHHHHHHHHHHhccCccHHHHHHHHH-HhhcccceeeeeeeeccccccccccccccCCeeeeeeeeecC Confidence 543221 1122333332222 2235677777775 6789999999998753 22 255666666 Q ss_pred Ccce-EEEEcCCcceeEEEEEc--------------CCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 131 PDVV-EMLIENQSRELYYSIHA--------------ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAV 195 (409) Q Consensus 131 p~~v-~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~ 195 (409) +... +...+.++.......+. .....+.+++...++.++....+.++|.|.+..|.-........ T Consensus 156 q~~~~~f~~d~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~kfi~~~~~~~~g~p~g~gLlr~~~w~~~fK~~~ 235 (488) T protein:vir:95 156 QSTLDKWYFDEDFRRVTGVRQNLRNVSHIAGAINLGERPLTRKLPRAKFMLFKYDDEYGNPEGRSPLLNAYVPWKYKVQI 235 (488) T ss_pred cccccceeeccCCCceeecccccccccccccccccccccccccccccceEEEeecCCCCccchhhHHHHHHHHHHHHHHH Confidence 6432 23334444332211110 01123457666666656655667789999999998887777766 Q ss_pred HHHHHHhcCC--CceeEEec----CCcCCHHHHHHHHHHHHHHhcC----CCceeecCCCceee---------eccCC-h Q lcl|Aclame:pro 196 RTFNLTEMQK--PDSFMLKY----GSNVSTEKRQQVLEDFKQYYEE----NGGILFQEPGVEIE---------PLPKK-Y 255 (409) Q Consensus 196 ~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~~g~~~~---------~l~~~-~ 255 (409) .+..+.+... .|..+.+. ....++++.+.+.+...++..+ ....++++.|+++. -++.. . T Consensus 236 ~~~w~~f~Er~g~g~p~~~~p~~~~~~~~~~e~~~l~~a~~~i~~~~~~~~~ag~iiP~g~~~~~k~~~~e~~l~~~~~~ 315 (488) T protein:vir:95 236 EEYEAVGVSRDLVGMPKIGLPPDYLDENAEPEKKAFVQYCKTVVNDMIANDRAGLIWPRYIDPDTKEDIFEFSLVSRQGA 315 (488) T ss_pred HHHHHHHHHHhcccceeEeeccCCCCCcccHHHHHHHHHHHHHHHHhhccchhheeeccccccccchhhhhhhccccccC Confidence 6554433321 22222222 2234555555555555554432 22335566555422 22222 2 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhh----ccccce Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTD----REKNRY 331 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~----~~~~~~ 331 (409) .-..+.++.++-.++|+++.--..--.+....|+++. .+.........+.-.++.|++.||++|+.+.- .....+ T Consensus 316 ~~~~~~~li~~~d~~Isk~iLGqtLT~~~~~~Gs~Al-~~vh~ev~~~i~~aDa~~i~~tln~~li~~l~~~Nfg~~~~~ 394 (488) T protein:vir:95 316 KAYDTGSIIDRYSKQIMMAFMSDVLAMGQSKYGSFSL-ADSKTSLLAMSVDILLKQIKNVINRDLVAQTYALNMWDDEEH 394 (488) T ss_pred CchhHHHHHHHHHHHHHHHHhccccccccCcchhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc Confidence 3344777788888899888532111111222344443 33344555667788999999999999887642 112223 Q ss_pred EEecchhhhhhhHHHHHHHHHHHHhcCCcCH-----HHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCC-CC- Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYFKAVRSGYYTI-----NDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGG-DK- 404 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~-----NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg-~~- 404 (409) .+|-++.....|.++.++++.+++..|+.-+ +.+|+.+|+|+-+++.....+.--.+-...+... ...|. .. T Consensus 395 P~~~~~~~e~~Dl~~~ae~~~~L~~~G~~i~~~~~~~~i~e~~gip~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 473 (488) T protein:vir:95 395 VQITYDDIETPDLEAIGSYIQKTVAVGALEVDKELSNKLREHIGLPPADESQPVSEKLSPNSQSRSGDGY-KTAGEGTAK 473 (488) T ss_pred cEEEecCcChhhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCccccccCCCCCCCCCCccc-CCCcccCCc Confidence 3455556678888999999999999998664 5699999999766555444332111100000000 00010 00 Q ss_pred --CCCCC Q lcl|Aclame:pro 405 --NVNES 409 (409) Q Consensus 405 --n~~~~ 409 (409) ...++ T Consensus 474 ~~~~~~~ 480 (488) T protein:vir:95 474 TPSAKDP 480 (488) T ss_pred ccccccc Confidence 11111 No 128 >protein:vir:98816 Length: 446 # NCBI annotation: hypothetical protein # Family: family:all:32558 # MgeID: mge:1530 # MgeName: Ma-LMM01 # Cross-refs: genbank:acc:YP_851097;genbank:gi:117530254;genbank:GeneID:4484480 Probab=99.67 E-value=1.8e-16 Score=106.88 Aligned_cols=366 Identities=13% Similarity=0.098 Sum_probs=202.7 Q ss_pred Ccchhh----hh-hhhhhhhcccccCcccccccccccCCCCcc------ccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENI----VT-RIKKKLIDNWIDQSASKLYDFSPWKNKSFW------GVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~----~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |-+.+= +. ++..+. .-.+-... ..++-......+- .+..+...+.+.|.+|++.+...|.+++|.| T Consensus 3 ~~~~~~p~~~~~~~~~~~~--~~~~~~~g-~~~~D~~lr~~gg~~~~~~~l~~~m~e~D~~v~s~l~~Rk~av~~~~w~V 79 (446) T protein:vir:98 3 MEVRNAPTPAIRRRTIYAM--EHLGLATS-YLSEDGGYKRAGKPTYQQLSAWDEAAQTEPIIAQGLDSIALSVLNKVGPY 79 (446) T ss_pred ccccCCCchhhhhhhhhcc--ccchhhcc-cCCcchHhhhcCCChHHHHHHHHHHHhcchHHHHHHHHHHHHhhcCCcee Confidence 333220 00 010000 00000000 0011111111111 1222223458999999999999999999999 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC---ceeE----EEeeCCcceEEEEcCCc Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH---QPSK----LFLLNPDVVEMLIENQS 142 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G---~~~~----l~~l~p~~v~~~~~~~~ 142 (409) ...++..-.-+...|.... .++....+.+.+.+|-++.++++...+ .|.. +....|..+....+.++ T Consensus 80 ~p~~~~~a~~v~~~l~~~~------~~~~~~~~ldai~~G~s~~Eivw~~~~g~~~p~~~~d~~~~~~~~~~r~~~~~~~ 153 (446) T protein:vir:98 80 QHGDKRIKKFIDDQLRNRA------KTWISHCVKSIMTYGFSLSEQIYAHGARDNMPATVLDDIVNYHPLQVMLIANDNG 153 (446) T ss_pred cCccHHHHHHHHHHHhhcC------chhHHHHHHHHHhhCceeeeEEEeecccccccchhhccccccccccceeeeccCC Confidence 7644322222333443321 244444567899999999999875321 1111 11222222222222222 Q ss_pred ceeEE-------------------------EEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 143 RELYY-------------------------SIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRT 197 (409) Q Consensus 143 ~~~~~-------------------------~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~ 197 (409) ..... ......|..+.+|....+|+++....+.++|.|.+..|.-.........+ T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~iP~~kfi~~~~~~~~~~p~G~gLlr~~~w~~~fK~~~~~ 233 (446) T protein:vir:98 154 RIVDGDTVTASQYKSGYWVPLPPYRIGDPPKKVDVVGSHVRLPSHKRLFINYNTKGNNPWGTSCLTSVLDYSIFKRAFRD 233 (446) T ss_pred ccccccccchhhcccccccCcccchhhhhhhhcccCcccccccccceEEEEecCCCCCccccchHHHHHHHHHHHHhhHH Confidence 21100 00112334456888888888887777889999999999988888877776 Q ss_pred HHHHhcC--CCceeEEecCCcCCHHHH------H---HHHHHHHHHh----cCCCcee---ecCCCceeeeccCChh-hH Q lcl|Aclame:pro 198 FNLTEMQ--KPDSFMLKYGSNVSTEKR------Q---QVLEDFKQYY----EENGGIL---FQEPGVEIEPLPKKYV-SE 258 (409) Q Consensus 198 ~~~~~~~--~~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~----~~~~~~~---vl~~g~~~~~l~~~~~-d~ 258 (409) ..+.+.. ..|..+.+.+...++++. + ...+.+.++. .+++.++ +++.|++++-++.... .. T Consensus 234 ~w~~f~E~yG~P~~vGkyp~ga~~~~~~~~~~~~~~~~~~~~L~~av~~~~~da~~ii~~~~~P~g~eie~~ea~~~~~~ 313 (446) T protein:vir:98 234 MMLIALDRYGTPLIYVIVPPGNTGVVEEAPDGTEITTTIAEQAEDALRRLSTDSGLVLTQLSKEQPVQVGALTTGNNFSD 313 (446) T ss_pred HHHHHHhHcCCceeEEeecCCCCcccccchhHHHHHHHHHHHHHHHHHhccccceeeeecccCCCCceEEeeccccCChh Confidence 6544432 234445555443332221 1 1222333333 2333332 3488888766554322 23 Q ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCcc--cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccc-------- Q lcl|Aclame:pro 259 DIVASENLTRERVANVFQLPSIFLNARS--NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREK-------- 328 (409) Q Consensus 259 ~~~e~~~~~~~~Ia~~fgvp~~~l~~~~--~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~-------- 328 (409) .+.++.++..++|+++.....-.++... .++++-.+.+ .......+.-.+++|++.+|++|+.+.-.-. T Consensus 314 ~~~~~i~~~d~~IskaiLg~~Ltl~~~~~~~GS~ala~vh-~~V~~d~~~aDa~~i~~tln~~Li~~l~~lNf~~~~~~~ 392 (446) T protein:vir:98 314 SFERAISLCDNNMLMGMGIPNLLVQNRETTFGTGRASEIQ-LELFDGKINSIFDTVIHAFTEQVIGNLIRLNFDPALYPL 392 (446) T ss_pred hHHHHHHHHHHHHHHHHhcccccccccccccchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc Confidence 5888899999999999766544444332 2344433333 3455567788999999999999976542111 Q ss_pred ---cceEEecchhhhhhhHHHHHHHHHHHHhcCCcCH---HHHHHHhCCCCCCCCC Q lcl|Aclame:pro 329 ---NRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTI---NDIREWEDLPPVEGGD 378 (409) Q Consensus 329 ---~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~---NE~R~~~g~~p~~~gd 378 (409) ..+++|++. ...|++..++++.++++.|++++ +.+|+.+|+|+-+..- T Consensus 393 ~~~~~~~~~~~~--e~eDl~~~a~~~~~L~~~G~~~p~~~~~ire~~giP~~~~~~ 446 (446) T protein:vir:98 393 ASNTGYITRLPG--RATDLAALVEAIKQMHDMGFLVDGDKDHIRSITGLPDAISST 446 (446) T ss_pred ccccccceeccC--ChhhHHHHHHHHHHHHhCCccccccHHHHHHHhCcCCCCCCC Confidence 112344433 46789999999999999998765 4599999998753222 No 129 >protein:vir:77981 Length: 448 # NCBI annotation: portal protein # Family: family:all:2372 # MgeID: mge:1843 # MgeName: P23-45 # Cross-refs: genbank:acc:YP_001467939;genbank:gi:157265380;genbank:GeneID:5600471 Probab=99.67 E-value=8.8e-16 Score=103.11 Aligned_cols=391 Identities=11% Similarity=0.039 Sum_probs=215.5 Q ss_pred Ccchhhhhhhhhhhh--cccccCcc---------cccccccccCCCC---------ccccchhHHhhhHHHHHHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLI--DNWIDQSA---------SKLYDFSPWKNKS---------FWGVINNTLETNETIFSAITKLSN 60 (409) Q Consensus 1 M~~~~~~~r~~~~~~--~~~~~~~~---------~~~~~~~~~~~~~---------~~~v~~~~~~~~~~v~~~i~~ia~ 60 (409) |.+.+=-. ++... ....+... .....+.+..... ... ..+..+..+.|.+|++.+.. T Consensus 1 m~kk~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~iLr~~~~~~-ly~~m~~D~hi~s~l~~Rk~ 77 (448) T protein:vir:77 1 MAKRGRKP--KELVPGPGSIDPSDVPKLEGASVPVMSTSYDVVVDREFDELLQGKDGLL-VYHKMLSDGTVKNALNYIFG 77 (448) T ss_pred CCCCCCCC--cccCCcccccchhhhhhhccchhhhcccccccccccchhHhhccccchH-HHHHHhhChHHHHHHHHHHH Confidence 88753111 11100 00000000 0000111111111 111 23446678999999999999 Q ss_pred hhccCceeEeecccc-ccchhhhhhhc---cc---cCCCCHHHHHHHHHHHHHhcCCeEEEeeecC--CCc--eeEEEee Q lcl|Aclame:pro 61 SMASLPLKMYEDYKV-VNTEVSDLLTV---SP---NNSLSSFDFINQIETIRNEKGNAYVLIERDI--YHQ--PSKLFLL 129 (409) Q Consensus 61 ~ia~lp~~~~~~~~~-~~~~~~~~L~~---~p---n~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~--~G~--~~~l~~l 129 (409) .|.+++|.|...++. .....+..+.. .+ ....++.+++..+. +.+.+|-+++++++.. +|. +..+.+. T Consensus 78 av~~~~w~v~p~~~~~~d~~~ae~v~~~l~~~~~~~~~~~f~~~i~~~l-da~~~G~s~~Eivw~~~~dg~~~~~~l~~r 156 (448) T protein:vir:77 78 RIRSAKWYVEPASTDPEDIAIAAFIHAQLGIDDASVGKYPFGRLFAIYE-NAYIYGMAAGEIVLTLGADGKLILDKIVPI 156 (448) T ss_pred HHhcCCceEecCCCCHHHHHHHHHHHHHhhchhhhhccCCHHHHHHHHH-HhhhhcceeEEEEEeecCCCceeecccccc Confidence 999999999753322 12222222221 11 12346778888774 7999999999998743 454 5567777 Q ss_pred CCcceE-EEEcCCcceeEEEEEc------CCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHh Q lcl|Aclame:pro 130 NPDVVE-MLIENQSRELYYSIHA------ATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTE 202 (409) Q Consensus 130 ~p~~v~-~~~~~~~~~~~~~~~~------~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~ 202 (409) ++..+. ...+.++......... .......+|...++|..+. ..+.++|.|.+..|.-.........+..+.+ T Consensus 157 ~~~~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~~-~~g~p~g~gLlr~~~w~~~fK~~~~~~w~~f 235 (448) T protein:vir:77 157 HPFNIDEVLYDEEGGPKALKLSGEVKGGSQFVNGLEIPIWKTVVFLHN-DDGSFTGQSALRAAVPHWLAKRALILLINHG 235 (448) T ss_pred CCCccceeeeecCCceEEEecCCcccccccCCCccccccceEEEEecC-CcCCcccchHHHHHHHHHHHHHhhHHHHHHH Confidence 775432 3344555443332211 1112345678888888764 4467889999999998777777666554433 Q ss_pred cC--CCceeEEecCC--cCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 203 MQ--KPDSFMLKYGS--NVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLP 278 (409) Q Consensus 203 ~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp 278 (409) .. ..|..+.+++. ..++++++++.+...+...++...++++.|++++-++.+....++.++.++-.++|+++..-. T Consensus 236 ~E~yG~P~~vgky~~ga~~~~~~~~~l~~av~~i~~g~~a~~iiP~g~~ie~~ea~~~~~~~~~~i~~~d~~Isk~iLGq 315 (448) T protein:vir:77 236 LERFMIGVPTLTIPKSVRQGTKQWEAAKEIVKNFVQKPRHGIILPDDWKFDTVDLKSAMPDAIPYLTYHDAGIARALGID 315 (448) T ss_pred HHHcCCceeEEecCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecCCceEEEEecCCCccCHHHHHHHHHHHHHHHHhcc Confidence 22 22344555543 345567777777777654444445778888876666554444557788889999999886422 Q ss_pred hhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc-----c-ccceEEecchhhhhhhHHHHHHHHH Q lcl|Aclame:pro 279 SIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR-----E-KNRYFKFNVKSYLRADSATQAEVYF 352 (409) Q Consensus 279 ~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~-----~-~~~~~~~d~~~l~~~d~~~~~~~~~ 352 (409) .+-...+.++++.............+.-.++.|++.||++|+.+.-. . ...++.|+ .....|++..++.+. T Consensus 316 -tlTs~~~~g~~~~~~~~~~~v~~~~~~aDa~~i~~tln~~Li~~l~~lNfg~~~~~P~~~f~--~~e~eDl~~~a~~~~ 392 (448) T protein:vir:77 316 -FNTVQLNMGVQAVNIGEFVSLTQQTIISLQREFASAVNLYLIPKLVLPNWPGATRFPRLTFE--MEERNDFSAAANLMG 392 (448) T ss_pred -ccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEec--CCChhhHHHHHHHhH Confidence 22112223334444334334556667889999999999999875411 1 11245555 446778888898888 Q ss_pred HHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 353 KAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 353 ~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++ +-+|+.+|+|.--++...-.+....+.... ............++ T Consensus 393 ~l~-------~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 439 (448) T protein:vir:77 393 MLI-------NAVKDSEDIPTELKALIDALPSKMRRALGV---VDEVREAVRQPADS 439 (448) T ss_pred HHH-------HHHHHHhcCCccCCcCCCCCchhcccccCC---CCCCCchhhcchhh Confidence 876 458999999853222111111110000000 00001111222233 No 130 >protein:vir:96738 Length: 505 # NCBI annotation: putative phage-related protein # Family: family:all:47 # MgeID: mge:1628 # MgeName: VP882 # Cross-refs: genbank:acc:YP_001039817;genbank:gi:126010916;genbank:GeneID:5076248 Probab=99.67 E-value=1.2e-16 Score=107.80 Aligned_cols=406 Identities=11% Similarity=0.024 Sum_probs=221.4 Q ss_pred Ccch----hhhhhhhhhh-----------hcccccCc-ccccccccccC-CCCc-c----------ccchhHHhhhHHHH Q lcl|Aclame:pro 1 MAKE----NIVTRIKKKL-----------IDNWIDQS-ASKLYDFSPWK-NKSF-W----------GVINNTLETNETIF 52 (409) Q Consensus 1 M~~~----~~~~r~~~~~-----------~~~~~~~~-~~~~~~~~~~~-~~~~-~----------~v~~~~~~~~~~v~ 52 (409) |+-. +++.|.-... ...+-... ......|.... ..+. . ..+++-+..++.+. T Consensus 1 ~~r~~~~~~~~dr~i~~~~~~~~~~~~~~~~~y~aa~~~r~~~~w~~~~~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~ 80 (505) T protein:vir:96 1 MKRAEKKPSLAQRMVNWAWYRYVEPQKNAARAFEAARRDRLGKAWLRRASRLSADEEIYADLASLVQRAREQSINNPYAK 80 (505) T ss_pred CCCCccccchhhcccchhhhhhHHHHHHhhhhcccccCCCccccccCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHH Confidence 4332 2233321110 00010111 11111221111 1110 1 11344577899999 Q ss_pred HHHHHHHHhhc-cCceeEeeccc----cccchhh-------hhhhcccc----CCCCHHHHHHHHHHHHHhcCCeEEEee Q lcl|Aclame:pro 53 SAITKLSNSMA-SLPLKMYEDYK----VVNTEVS-------DLLTVSPN----NSLSSFDFINQIETIRNEKGNAYVLIE 116 (409) Q Consensus 53 ~~i~~ia~~ia-~lp~~~~~~~~----~~~~~~~-------~~L~~~pn----~~~s~~~f~~~~~~~~l~~G~a~~~~~ 116 (409) .+|+.+.+.+- ..-+...-..+ ..+.++. ......+| ..+++.++...++..++..|++|+.+. T Consensus 81 ~av~~~~~nvVG~~Gi~~~~~~~~~~~~~~~~~~~~ie~~w~~Wa~~~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~ 160 (505) T protein:vir:96 81 RFYQLLKNNVIGPKGMTFQSRVKRRNGKPDDRANTLIEGNWQQWIKKGNCDVTGRYHFVTLLHLWMETLARDGEVLVREH 160 (505) T ss_pred HHHHHHHHHhcCCCcceeeecCCcccccccHHHHHHHHHHHHHhcCCcCcceeccCCHHHHHHHHHHHHhhCCceEEEEe Confidence 99996666554 34554433211 1111222 22222333 447899999999999999999998876 Q ss_pred ecCCC-ceeEEEeeCCcceE----------------EEEcCCcceeEEEEEcC-C-----------CeEEEEccceEEEe Q lcl|Aclame:pro 117 RDIYH-QPSKLFLLNPDVVE----------------MLIENQSRELYYSIHAA-T-----------GNKLIVHNMDMLHF 167 (409) Q Consensus 117 ~~~~G-~~~~l~~l~p~~v~----------------~~~~~~~~~~~~~~~~~-~-----------g~~~~~~~~~vih~ 167 (409) +...+ .+..|..|+|+++. |..|..|....|.+... - .....+++++|+|+ T Consensus 161 ~~~~~~~~~~lqliepd~l~~~~n~~~~~~~~i~~GIe~d~~Gr~~aY~i~~~hPgd~~~~~~~~~~~~~rvpa~~vlH~ 240 (505) T protein:vir:96 161 RGYPNKWGYALQILECDRLDLNYNADLQNGNRIRMSIELDAWERPVAYHLLVNHPGDNSYCYHYAGQTYERVPADEIIHT 240 (505) T ss_pred ecCCCCcceEEEEechhhcCCCCCcccCCcCeEEeceEECCCCceEEEEEeecCCCccccccccccccccccCHhHhhhh Confidence 54332 35677878777653 23455677777766321 0 12345788999999 Q ss_pred cCcCcccccccccHHHHHHHHHHHHHHHHHH---HHHhcCCCceeEEecC-CcCCHHHHHHHHHHHHHHhcCCCceeecC Q lcl|Aclame:pro 168 KHIVASNMVQGISPIDVLKNTTDFDNAVRTF---NLTEMQKPDSFMLKYG-SNVSTEKRQQVLEDFKQYYEENGGILFQE 243 (409) Q Consensus 168 ~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 243 (409) -.+...++.+|+|.+..+...+.-....... .++..+.-.. +++.+ ....+...+.-.+... .-+.|.+..|. T Consensus 241 f~~~r~gQ~RGis~lapvl~~l~~l~~y~dael~~a~i~A~~a~-fi~~~~~~~~~~~~~~~~~~~~--~l~pG~i~~L~ 317 (505) T protein:vir:96 241 FVPWRPHQNRGIPWTHASMVELHHIGEYRKSEMIAAELGAKKVG-FYEQDPEAYDQPPEDDQGEIVE--EVEAGTYQLLP 317 (505) T ss_pred hcccCCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhhee-eeecCCccCCCccccccCcccc--ccCCceeeecC Confidence 9888789999999999888776544433322 2222222223 33332 2121111110000000 01467788899 Q ss_pred CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHHHHH-----------HHHHHHHHHHHH- Q lcl|Aclame:pro 244 PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEELNR-----------FYLQHTLLPIVK- 310 (409) Q Consensus 244 ~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~~~-----------~~~~~~l~P~~~- 310 (409) +|.+++.++.+--..+|.+..+...+.||+.+|||...|.+. ...|||+..+... .|+..-+.|+.+ T Consensus 318 pGe~i~~~~~~~p~~~~~~f~~~~lr~iaaglgi~ye~lt~D~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~pi~~~ 397 (505) T protein:vir:96 318 YGIRFKEHKIDHPHTNFGAFVKSSLRGVAAGMGPAYNRLAHDLEGVNFSSLRSGELDERDLYKLLQFFVVTELLERVAGN 397 (505) T ss_pred CCCeeeeeCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 999999988876677889999999999999999999988554 4568887755433 344445555433 Q ss_pred HHHHHHHHhhcChhhcccc--ceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCE------Eee Q lcl|Aclame:pro 311 QYEEEFNRKLLTKTDREKN--RYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDK------PLI 382 (409) Q Consensus 311 ~ie~~ln~~ll~~~~~~~~--~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~------~~~ 382 (409) .+++++-.-.++....... ..+.|-.-.....|..+.+++...++++|+.|.-|+-.+.|.++-+--+. .+- T Consensus 398 ~l~~a~l~G~i~~p~~~~~~~~~~~w~~p~~~~iDP~Ke~~a~~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~ 477 (505) T protein:vir:96 398 LISMSLLTQALPLNMVDIDRLSQYAFQPRGWDWVDPAKDSKAHSESIKNRTRSRSSIIRAAGDDPEDVFDEIAWEEQLMR 477 (505) T ss_pred HHHHHHHcCCcCCCCccchhhceeeeccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHH Confidence 3455544444432111111 23455555566789999999999999999999999888888887431110 011 Q ss_pred cccccchhccccc-ccccCCCCCCCCCC Q lcl|Aclame:pro 383 SGDLYPIDTPLEL-RKSLKGGDKNVNES 409 (409) Q Consensus 383 ~~n~~~~~~~~~~-~~~~~gg~~n~~~~ 409 (409) -.++.+.+..... +......+.+..|. T Consensus 478 ~~Gl~~~~~~~~~~~~~~~~~~~~~~d~ 505 (505) T protein:vir:96 478 DKGVNPTPPEQESKDATTDEEDDSASDD 505 (505) T ss_pred HcCCCCCCCCCCCCCCCCCCCCCCCCCC Confidence 1111111100000 00000111111111 No 131 >protein:vir:95542 Length: 548 # NCBI annotation: Putative portal protein # Family: family:all:47 # MgeID: mge:1574 # MgeName: F10 # Cross-refs: genbank:acc:YP_001293348;genbank:gi:148912769;genbank:GeneID:5228194 Probab=99.65 E-value=1.8e-16 Score=106.88 Aligned_cols=403 Identities=9% Similarity=0.015 Sum_probs=214.3 Q ss_pred Ccchhhhhhhhhhh--------------hcccccCcccccccccccCCCCcc-----------ccchhHHhhhHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKL--------------IDNWIDQSASKLYDFSPWKNKSFW-----------GVINNTLETNETIFSAI 55 (409) Q Consensus 1 M~~~~~~~r~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~~~~~v~~~i 55 (409) |.+. .|....+ ...+-.........+-. ...+.. ..+++-+..++.+..+| T Consensus 1 Mn~i---Dr~i~~~sP~~a~~R~~ar~~~~~y~aa~~~r~~~~~~-~~~s~~~~i~~~~~~lr~RaRdL~rNn~~a~~av 76 (548) T protein:vir:95 1 MNLI---DRLLEPLAPELVARRLAAREAIQAYEAARPGRTHKAKR-QPLGADTSLQKSAVSMREQCRKLDEDHDLVTGLL 76 (548) T ss_pred CchH---HhHhhhcchHHHHHHHHhHHHhccccccCccccccccC-CCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHH Confidence 7763 3322111 11121222222221111 111111 11334577899999999 Q ss_pred HHHHHhh-ccCceeEee----ccccccchhhh-------hh--hccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC Q lcl|Aclame:pro 56 TKLSNSM-ASLPLKMYE----DYKVVNTEVSD-------LL--TVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH 121 (409) Q Consensus 56 ~~ia~~i-a~lp~~~~~----~~~~~~~~~~~-------~L--~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G 121 (409) +.+.+.+ ++.-+.+.. .+.....++.. .. +......+++.++...++..++..|++|+.+.+...+ T Consensus 77 ~~~~~nvVG~~G~~i~p~~l~~d~~~a~~l~~~ie~~w~~Wa~~~D~~g~~~f~~lq~l~~R~~~~dGE~f~~~~~~~~~ 156 (548) T protein:vir:95 77 DRLEERVVGGSGIGVEPLPLRLDGSVHAELAMEIRSAWAEWSLSPETSGELTRPQVERLMCRTWLRDGEGLAQKLMGRVP 156 (548) T ss_pred HHHHHhccCccccceeeeecCCCHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHHHhCCceEEEeeecccc Confidence 9775554 432222221 11111111211 11 1223445789999999999999999999888764322 Q ss_pred -------ceeEEEeeCCcceE-------------EEEcCCcceeEEEEEcC----------CCeEEEEccceEEEecCcC Q lcl|Aclame:pro 122 -------QPSKLFLLNPDVVE-------------MLIENQSRELYYSIHAA----------TGNKLIVHNMDMLHFKHIV 171 (409) Q Consensus 122 -------~~~~l~~l~p~~v~-------------~~~~~~~~~~~~~~~~~----------~g~~~~~~~~~vih~~~~~ 171 (409) .+..|..|+|+++. |..|..|....|.+... ......+++++|+|+..+. T Consensus 157 ~~~~g~~~~~~lqliepd~l~~~~~~~~~~i~~GIE~D~~Grp~aY~i~~~hPgd~~~~~~~~~~~rvpA~~VlHif~~~ 236 (548) T protein:vir:95 157 NYTFATSVPFALELLEPDYLPFSYNNLSKGIVQGIERDTWRRKRAYHLLKDHPGNLQTLGGSLAVKRVEAERIIHIAYRK 236 (548) T ss_pred cccCCcccceEEEEechhhcCCCCCCCCCceeeeeEECCCCceEEEEEeecCCCcccccccccceeeechhHheeccccc Confidence 35678888887653 23455666666666431 1234668999999999887 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHh-cCCCcee-ecCCCc Q lcl|Aclame:pro 172 ASNMVQGISPIDVLKNTTDFDNAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYY-EENGGIL-FQEPGV 246 (409) Q Consensus 172 ~~~~~~G~sp~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-vl~~g~ 246 (409) ..++.+|+|.+..+...+......... ..+..+.-..+ ++.+..-. ...+.....-.... -..|.++ .|..|. T Consensus 237 r~gQ~RGvs~lapvl~~l~~l~~y~dael~~aki~A~~a~f-i~~~~~~~-~~~~~~~~~~~~~~~~~pG~iv~~L~pGe 314 (548) T protein:vir:95 237 RIGQNRGVPMLHAVLIRLADLKDYEESERVAARISAALAMY-IKKGNPDS-YTVEPGKDRKNRTIPIAPGMVFDDLEPGE 314 (548) T ss_pred CCccccCcchHHHHHHHHHHHhHHHHHHHHHHHHhhhheee-eecCCCcc-ccCCCCcccccccccccCCccccccCCCc Confidence 778999999999888776544433322 22222222233 33221100 00000000000001 1245443 588999 Q ss_pred eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHH-----------HHHHHHHHHHHH-HHHH Q lcl|Aclame:pro 247 EIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNR-----------FYLQHTLLPIVK-QYEE 314 (409) Q Consensus 247 ~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~-----------~~~~~~l~P~~~-~ie~ 314 (409) +++..+.+--...|.+..+...+.||+.+|||...|.+..++|||+...... .|+..-+.|+.+ -+++ T Consensus 315 ~i~~~~p~~p~~~~~~f~~~~lr~IAaglGipYe~ltgD~s~nYSS~R~~l~e~~r~~~~~q~~~i~~~~~Pi~~~wle~ 394 (548) T protein:vir:95 315 DVGMIESNRPNPFLEGFRNGQLRMIGAGTRSTYSSVSRAYDGTYSAQRQELVEGWLGYDLLQHEFIDYWCRPVYRSWLQM 394 (548) T ss_pred eeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 9988887656677899999999999999999999987665678887755433 333344445222 3444 Q ss_pred HHHHhhcCh-hhcccc--ceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC----------CCEEe Q lcl|Aclame:pro 315 EFNRKLLTK-TDREKN--RYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG----------GDKPL 381 (409) Q Consensus 315 ~ln~~ll~~-~~~~~~--~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~----------gd~~~ 381 (409) ++-.-.++. ...... ..+.+-.-.....|..+.+++...++++|+.|.-|+-.+.|.++-+- .+++= T Consensus 395 a~l~G~i~lP~~~~~~~~~~~~W~~P~~~~iDP~Kea~A~~~~i~~Gl~T~~~~~a~~G~D~~ev~~q~a~E~~~~~~~G 474 (548) T protein:vir:95 395 YLLARKERLPADVDHRTLYAAVYQGPVMPWINPMHEANAWELLVKAGFADEAEVARARGRDPRELKKSRETEIKANRAAG 474 (548) T ss_pred HHHcCCcCCCCCCCchhheeeeeecCCccccChHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC Confidence 444333321 111111 22333334456779999999999999999999999888888776421 00111 Q ss_pred ecccccchh--------cccccccccCC-------CCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPID--------TPLELRKSLKG-------GDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~--------~~~~~~~~~~g-------g~~n~~~~ 409 (409) ++....|.. ...+.++...| +|..++=+ T Consensus 475 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (548) T protein:vir:95 475 LVFSSDAYHQLVKSGMDPVEAVQKVYLGVGKMLTADEARELVN 517 (548) T ss_pred CCCCCcccccccccccCCCCchhhhccccccccccchhHHhhc Confidence 111111110 00011111111 11111101 No 132 >protein:vir:10321 Length: 495 # NCBI annotation: ORF23 # Family: family:all:47 # MgeID: mge:182 # MgeName: VHML # Cross-refs: genbank:acc:NP_758916;genbank:gi:27311190;genbank:GeneID:956137 Probab=99.63 E-value=2.8e-16 Score=105.86 Aligned_cols=401 Identities=12% Similarity=0.062 Sum_probs=209.7 Q ss_pred Ccchhhhhhhhhhhh----cccccCcccccccccccCCCCc-c----------ccchhHHhhhHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MAKENIVTRIKKKLI----DNWIDQSASKLYDFSPWKNKSF-W----------GVINNTLETNETIFSAITKLSNSMASL 65 (409) Q Consensus 1 M~~~~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~----------~v~~~~~~~~~~v~~~i~~ia~~ia~l 65 (409) |...++......... ..+-... ....+..+.+.+- . ..+++-+..++.+..||+.+.+.+-.. T Consensus 3 ~~~~~~~a~~~~~~~~~~~~~y~aa~--~~~~~~~~~~~s~d~~~~~~~~~lr~RaRdl~rNn~~a~~av~~~~~~vVG~ 80 (495) T protein:vir:10 3 MTPSGYQSLASGLLVPVGASAYEGAS--GGHRWQDIGDYGPDTAVASGIQTLRARSHHNVRNNPWATNAVATWVAAAVGN 80 (495) T ss_pred cccccccccchhhhhHHHhhhhhccc--cCcccCCCCCCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC Confidence 444454432111110 1111111 1111222221111 1 113345778999999999888777544 Q ss_pred ceeEeec--cccccchh---hhhhh--ccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC--CC--ceeEEEeeCCcce Q lcl|Aclame:pro 66 PLKMYED--YKVVNTEV---SDLLT--VSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI--YH--QPSKLFLLNPDVV 134 (409) Q Consensus 66 p~~~~~~--~~~~~~~~---~~~L~--~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~--~G--~~~~l~~l~p~~v 134 (409) .|...-+ ++.....+ +.... ......+++..+...++..++..|++|+.+.+.. .| .+..|..|+|+++ T Consensus 81 Gi~p~~~~~~~~~~~~ie~~w~~wa~~~D~~g~~~f~~lq~l~~r~~~~dGE~f~~~~~~~~~~g~~~~~~lqliepd~l 160 (495) T protein:vir:10 81 GLTPRWRMKEQELRQELQELWGDWVNEADFDEVQSFYGLQALVVRTVINSGEAFVIKKPRPLSEGLSVPLQLQIIEPDML 160 (495) T ss_pred CcccccCCchHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHHhCCceEEEEeecccCCCCccceEEEEechhhc Confidence 5554332 21111111 11111 2234457899999999999999999998876543 33 3567888888766 Q ss_pred EE-----------------EEcCCcceeEEEEEc-CCC---------eEEEEccceEEEecCcCcccccccccHHHHHHH Q lcl|Aclame:pro 135 EM-----------------LIENQSRELYYSIHA-ATG---------NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKN 187 (409) Q Consensus 135 ~~-----------------~~~~~~~~~~~~~~~-~~g---------~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~ 187 (409) .. ..|..|....|.+.. .-| ....+++++|+|+.. ...++.+|+|.+..+.. T Consensus 161 ~~~~~~~~~~~g~~i~~GIe~d~~Gr~vaY~i~~~hpgd~~~~~~~~~~~rvpA~~vlH~f~-~r~gQ~RGis~la~i~~ 239 (495) T protein:vir:10 161 ASDIPDETLPSGGYVKGGIRFSNGGKRKAYCFYRNHPAESSLIGDPVDTVWIKAEHVLHVTV-LTVRSDAGAPWFQLLLR 239 (495) T ss_pred CCCCCCCCCCCCCEEEeceEECCCCceEEEEEeecCCCcccccccccceeeechhheEeccc-cCCCcccCcchhHHHHH Confidence 42 234456666666532 111 345689999999964 45578899997765443 Q ss_pred HHHHHH---HHHHHHHHhcCCCceeEEecCCcC------CHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhH Q lcl|Aclame:pro 188 TTDFDN---AVRTFNLTEMQKPDSFMLKYGSNV------STEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSE 258 (409) Q Consensus 188 ~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~ 258 (409) +.-.. .++....+..+.-..++....+.. ..+..+.-.... ..-+.|.+..|..|.+++..+.+.... T Consensus 240 -l~~l~~y~dael~~a~i~A~~~~fi~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~pG~i~~L~pGe~i~~~~p~~p~~ 316 (495) T protein:vir:10 240 -LNELDQYEDAELVRKKTAALFAAFIQEATADSTGGPTIGQPKRSKGGKRI--TGLNPGTLQYLQPGQEVKFSNPADVGT 316 (495) T ss_pred -HHHhhHHHHHHHHHHHHhhhheeeeecCCCccccccccCccccccCcccc--eecCCceeeecCCCCeeeeeCCCCCCC Confidence 32221 222222222222222222211110 000000000000 001467788999999999988775667 Q ss_pred HHHHHHHHHHHHHHHHhcCChhhcC-CcccCccccHHHHHHHHH------------HHHHHHHHHH-HHHHHHHhhcC-h Q lcl|Aclame:pro 259 DIVASENLTRERVANVFQLPSIFLN-ARSNTNFAKNEELNRFYL------------QHTLLPIVKQ-YEEEFNRKLLT-K 323 (409) Q Consensus 259 ~~~e~~~~~~~~Ia~~fgvp~~~l~-~~~~~~~~~~e~~~~~~~------------~~~l~P~~~~-ie~~ln~~ll~-~ 323 (409) .|.+..+...+.||+.+|||...|. .....|||+..+....|. ..-+.|+.+. ++.++-.-.++ + T Consensus 317 ~~~~f~~~~lr~iaaglGi~Ye~ltgD~s~~nYSS~R~~~~e~~r~~~~~q~~~~~~~~~~pi~~~~l~~a~l~G~i~~p 396 (495) T protein:vir:10 317 TYEPWLRYQLLSIAKGYGITYEMLTGDLRGVNYSSIRAGLLEFRRLCQQVQHHMIIHQFCRPVGRWFMDFAVASGAVVIP 396 (495) T ss_pred CHHHHHHHHHHHHHhhcCCCHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC Confidence 7889999999999999999999885 445668887755433332 2222332222 33333332221 1 Q ss_pred -hhcccc--ceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC----------CCEEeecccccchh Q lcl|Aclame:pro 324 -TDREKN--RYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG----------GDKPLISGDLYPID 390 (409) Q Consensus 324 -~~~~~~--~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~----------gd~~~~~~n~~~~~ 390 (409) +..... ..++|-.-.....|..+.+++...++++|+.|.-++-.+.|.++-+- .+++=++.+..|.. T Consensus 397 ~~~~~~~~~~~~~w~~p~~~~vDP~Ke~~A~~~~i~~G~~s~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~p~~ 476 (495) T protein:vir:10 397 DYLQRRRYYNRVSWRTPRWEEVDPLKKHLADLGDVRAGFAPISDKQAERGYDMEELFDMISDANQLIDEYDLRLDSDPRY 476 (495) T ss_pred CchhhhHhhhccccccCCccccChHHHHHHHHHHHHcCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCCCCc Confidence 111111 12344445566789999999999999999999999888888887431 11111222221211 Q ss_pred ccccc--ccccCCCCCCCCC Q lcl|Aclame:pro 391 TPLEL--RKSLKGGDKNVNE 408 (409) Q Consensus 391 ~~~~~--~~~~~gg~~n~~~ 408 (409) ..... +...+..+ ++++ T Consensus 477 ~~~~~~~~~~~~~~~-~~~e 495 (495) T protein:vir:10 477 VNGSGAEQKSVMEAA-LNNE 495 (495) T ss_pred CCCccCCCCCCCCCC-CCCC Confidence 11111 11111111 1111 No 133 >protein:vir:6382 Length: 553 # NCBI annotation: portal protein Lambda B # Family: family:all:47 # MgeID: mge:133 # MgeName: BcepNazgul # Cross-refs: genbank:acc:NP_918995;genbank:gi:34610170;genbank:GeneID:2559575 Probab=99.60 E-value=4.5e-16 Score=104.73 Aligned_cols=407 Identities=11% Similarity=0.011 Sum_probs=217.1 Q ss_pred Ccch--hhhhhhhhh-----hh---cccccCcc--cccccccccCCCCcc----------ccchhHHhhhHHHHHHHHHH Q lcl|Aclame:pro 1 MAKE--NIVTRIKKK-----LI---DNWIDQSA--SKLYDFSPWKNKSFW----------GVINNTLETNETIFSAITKL 58 (409) Q Consensus 1 M~~~--~~~~r~~~~-----~~---~~~~~~~~--~~~~~~~~~~~~~~~----------~v~~~~~~~~~~v~~~i~~i 58 (409) |... ....+.... .. ..+-+... .....|.+....... ..+++-+..++.+..+|+.+ T Consensus 1 m~~~~~r~~~~~a~~~~~~~~~~~~~~y~gA~~~~r~~~~w~~~~~s~~~~~~~~~~~lr~RaRdL~rNn~~a~~av~~~ 80 (553) T protein:vir:63 1 MTKVTVRKLSEVTSGRPEQSASLGGGGLEGASRLSRETVSWNPSLRSPDALINPLKRIADARGRDMADNDGFTNGAVGYQ 80 (553) T ss_pred CcchhhhhhcccccccchhhhhhhcccccccccCCCcccccccCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH Confidence 4442 111111000 00 01110100 111222221111111 11334577899999999977 Q ss_pred HHhhccCceeEeeccc---------cccch-------hhhhhhcc------ccCCCCHHHHHHHHHHHHHhcCCeEEEee Q lcl|Aclame:pro 59 SNSMASLPLKMYEDYK---------VVNTE-------VSDLLTVS------PNNSLSSFDFINQIETIRNEKGNAYVLIE 116 (409) Q Consensus 59 a~~ia~lp~~~~~~~~---------~~~~~-------~~~~L~~~------pn~~~s~~~f~~~~~~~~l~~G~a~~~~~ 116 (409) ...+-...|.+.-+-+ ..... ++...... ....+++..+...++..++..|++|+.+. T Consensus 81 ~~nvVG~Gi~~~~~~~~~~l~g~~~~~~~~~~~~ie~~w~~wa~~~~~~~D~~g~~~f~~~q~l~~r~~~~dGE~~~~~~ 160 (553) T protein:vir:63 81 RDSIVGAQYRLNSMPDINVIPGATEEWAEEYQTIVEAKFELYAESLACYIDNAAISTFTGLIRLGVVGYVKTGEVLATAE 160 (553) T ss_pred HHhhccCCceeeeccchhhhcCCCHHHHHHHHHHHHHHHHHhcCCccceeeccccCCHHHHHHHHHHHHHhCCceEEEee Confidence 7776555666543211 11111 11222222 33446899999999999999999999876 Q ss_pred ecCC-Cc--eeEEEeeCCcceEE--------------EEcCCcceeEEEEEcC-CC----------------eEEEEccc Q lcl|Aclame:pro 117 RDIY-HQ--PSKLFLLNPDVVEM--------------LIENQSRELYYSIHAA-TG----------------NKLIVHNM 162 (409) Q Consensus 117 ~~~~-G~--~~~l~~l~p~~v~~--------------~~~~~~~~~~~~~~~~-~g----------------~~~~~~~~ 162 (409) +... |. +..|..|+|+++.. ..|.+|....|.+... -| ....++.+ T Consensus 161 ~~~~~~~~~~~~lq~ie~drl~~~~~~~~~~~i~~GVE~d~~Gr~vaY~i~~~hPgd~~~~~~~~~~~~r~~~~~~v~a~ 240 (553) T protein:vir:63 161 WDRAANRPYATCFQMVSTDRLSNPYQQLDTPTLRRGVQYDKRGRPQGYWIQVAHPGDLYQMAPDMYKWKFVQQSKPWGRR 240 (553) T ss_pred eccCCCCcccceEEEechhhcCCCCCCCCCCeeEeeeEECCCCceEEEEeeccCCCccccccccccceeeeccccccChh Confidence 5443 22 45677888865532 3455666666665321 11 12247789 Q ss_pred eEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHH---HHhcCCCceeEEecCCcCCHHHHHH--------------- Q lcl|Aclame:pro 163 DMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFN---LTEMQKPDSFMLKYGSNVSTEKRQQ--------------- 224 (409) Q Consensus 163 ~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 224 (409) +|+|+......++.+|+|.+..+...+.-........ .+..+.- .++++.+.. ++...+. T Consensus 241 ~vlH~f~~~r~gQ~RGis~lapvl~~l~~l~~y~daeL~~a~i~A~~-a~fi~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 318 (553) T protein:vir:63 241 QVIHILEPREPDQSRGIADIVSGLKDMRMAKRFKEMSLQNAVINASY-AAAIESELP-PEFIHSQMSGGSPNADMVGIFG 318 (553) T ss_pred HheecccccCCCcccCCchHHHHHHHHHHHhHHHHHHHHHHHHhhhh-eeeeecCCC-hhhhhhhccccccccccccccc Confidence 9999998877789999999998887765444333332 2222222 223332211 1111111 Q ss_pred -----HHHHHHHH---hcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHH Q lcl|Aclame:pro 225 -----VLEDFKQY---YEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEE 295 (409) Q Consensus 225 -----~~~~~~~~---~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~ 295 (409) ........ .-+.|.+..|..|.+++..+.+-...+|.+..+...+.||+.+|||...|.+. ...|||+... T Consensus 319 ~~~~~~~~~~~~~~~~~l~pG~i~~L~pGe~i~~~~p~~p~~~~~~F~~~~lr~iaaglGi~Ye~lt~D~s~~nYSS~R~ 398 (553) T protein:vir:63 319 KYMDALKAYVGGANNIQIDGAKIPHLFPGTKLNLKPMGTPGGVGSEFEASLNRHLASAFGMSYEEFTRDFSKANYSSIQA 398 (553) T ss_pred ccccccccccccccceeecCceeeecCCCCeeeecCCCCCCCCHHHHHHHHHHHHHhhcCCCHHHHhhhcccccHHHHHH Confidence 11110000 01367788899999999888875667788999999999999999999988554 5668887744 Q ss_pred HH-----------HHHHHHHHHHHHHH-HHHHHHHhhcCh-hh-----------ccccceEEecchhhhhhhHHHHHHHH Q lcl|Aclame:pro 296 LN-----------RFYLQHTLLPIVKQ-YEEEFNRKLLTK-TD-----------REKNRYFKFNVKSYLRADSATQAEVY 351 (409) Q Consensus 296 ~~-----------~~~~~~~l~P~~~~-ie~~ln~~ll~~-~~-----------~~~~~~~~~d~~~l~~~d~~~~~~~~ 351 (409) .. ..|+..-+.|+.+. +++++-+-.++- .. ...-..+.+-.-.....|..+.+++. T Consensus 399 ~~~e~~r~~~~~q~~~~~~~~~pi~~~wl~~a~l~G~i~~p~~~~~~~~~~p~~~~a~~~~~w~~p~~~~iDP~Ke~~A~ 478 (553) T protein:vir:63 399 GIAMTRRFLEGRKKMCADRLATEFFTLWLEEAIAAGEVPMPPGQTRDLFYQPLMKEALSKCEWIGASQGQIDQLKETQAA 478 (553) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccchhhcchhhhhhhhceeeecCCccccChHHHHHHH Confidence 33 23444444553332 344443322221 00 00011234444455677999999999 Q ss_pred HHHHhcCCcCHHHHHHHhCCCCCCC----------CCEEeecccccchhcccccc------cccCCCCCCCCCC Q lcl|Aclame:pro 352 FKAVRSGYYTINDIREWEDLPPVEG----------GDKPLISGDLYPIDTPLELR------KSLKGGDKNVNES 409 (409) Q Consensus 352 ~~~~~~g~~T~NE~R~~~g~~p~~~----------gd~~~~~~n~~~~~~~~~~~------~~~~gg~~n~~~~ 409 (409) ..++++|+.|.-|+-.+.|.++-+- .+++=++.+..|-......+ ......+.+++++ T Consensus 479 ~~~i~~G~~t~~~~~a~~G~D~~~v~~q~a~e~~~~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (553) T protein:vir:63 479 VMRIDAGLSTYEREIARLGGDFRKSFAQRAREDALLKKYGLTFNLSAKRSLGDGRDAATGIAEDPAAAQTSQQG 552 (553) T ss_pred HHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCcccCCCCCCCCCCCCccccc Confidence 9999999999999888888877431 11111121211111100000 0001112222222 No 134 >protein:vir:78161 Length: 355 # NCBI annotation: hypothetical protein # Family: family:all:2372 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294798;genbank:gi:149882819;genbank:GeneID:5309189 Probab=99.55 E-value=2e-14 Score=95.72 Aligned_cols=296 Identities=10% Similarity=0.029 Sum_probs=169.5 Q ss_pred EEEeeecCCC---ceeEEEeeCCcceE-EEEcCCcceeEEEEEcCCC-eEEEEccceEEEecCcCcccccccccHHHHHH Q lcl|Aclame:pro 112 YVLIERDIYH---QPSKLFLLNPDVVE-MLIENQSRELYYSIHAATG-NKLIVHNMDMLHFKHIVASNMVQGISPIDVLK 186 (409) Q Consensus 112 ~~~~~~~~~G---~~~~l~~l~p~~v~-~~~~~~~~~~~~~~~~~~g-~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~ 186 (409) +.++++...+ .|..|.+.++.++. ...++++....+......| ..+.+++...+++++....+.++|.|.+..|. T Consensus 1 v~Eivw~~~~g~~~~~~l~~r~~~~~~~f~~~~~~~l~~~~~~~~~g~~~~~lp~~kfi~~~~~~~~g~p~G~gLlr~~~ 80 (355) T protein:vir:78 1 MFEQVYRIENGRARLGKLAWRPPRTISRFDVAPDGGLVAIEQWGVFGKATVRIPVDRLVVFVNEREGANWLGQSLLRQAY 80 (355) T ss_pred CeEEEEEeeCCeEEEeeeeecCccceeeeeeccCCceeEEEecCCCCCCcceeccCCEEEEEeCCCCCCccchhhHHHHH Confidence 6677765443 37788889988665 4456666655554443333 45678887777666666667789999999999 Q ss_pred HHHHHHHHHHHHHHHhc---CCC-ceeEEecCCcCCHH-----------HHHHHHHHHHHHhcCCCceeecCCCceeeec Q lcl|Aclame:pro 187 NTTDFDNAVRTFNLTEM---QKP-DSFMLKYGSNVSTE-----------KRQQVLEDFKQYYEENGGILFQEPGVEIEPL 251 (409) Q Consensus 187 ~~i~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l 251 (409) -.........+..+.+. +.| +......+...+++ +.+.+.........+....++++.|++++-+ T Consensus 81 w~~~fK~~~~~~w~~f~Er~g~g~p~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~i~~g~~a~~iip~g~~ie~~ 160 (355) T protein:vir:78 81 KNWLLKDRFLRIQALVGERNGLGVPIYQGAPLPEAIARDTARAEQWLNDQKEEGLQLAKEFRAGEAAGGYIPHGANFTLT 160 (355) T ss_pred HHHHHHHhhHHHHHHHHHHcCCCceEEEecCCCCcccchhhhHHHHHHHHHHHHHHHHHHhhCCcceeEeecCCceEEEe Confidence 88887777766654433 323 33333333322222 2222323223222333356788899887777 Q ss_pred cCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc---- Q lcl|Aclame:pro 252 PKKYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR---- 326 (409) Q Consensus 252 ~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~---- 326 (409) ..+....++.++.++-.++|++++.-..--.+.. ..++++..+. ........+.-.++.|++.||++|+...-. T Consensus 161 ea~g~~~~~~~~i~~~d~~Isk~iLGqtlTs~~~~~gGS~Alg~v-h~~v~~~~~~aD~~~i~~~ln~~li~~l~~lN~~ 239 (355) T protein:vir:78 161 GVQGKLPEMDGPIRYHDEQIARAVLAHFLTLGGDKSTGSYALGDT-FASFFTGSLNAVMKHIADVTQQHVVEDLVDQNWG 239 (355) T ss_pred ecCCCcccHHHHHHHHHHHHHHHHhhhhhccccCCccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC Confidence 6666666788899999999999875332112121 2244443333 345556677889999999999988875311 Q ss_pred cccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHH-----HHHHHhCCCCCCCCCEEeecccc-cchhcccccccc-c Q lcl|Aclame:pro 327 EKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTIN-----DIREWEDLPPVEGGDKPLISGDL-YPIDTPLELRKS-L 399 (409) Q Consensus 327 ~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~N-----E~R~~~g~~p~~~gd~~~~~~n~-~~~~~~~~~~~~-~ 399 (409) ....+.+|.++... .+.++.++.+.+++..|++.++ .+|+.+|+|.-+.++....+..- .+.......... . T Consensus 240 ~~~~~P~~~~~~~~-~~~~~~a~~~~~l~~~G~~~~~~~~~~~~~e~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (355) T protein:vir:78 240 PEEPAPRLVPAQLG-KEQPVTAEAIRALVECGAFTADPELEKDLRARYGLPAPAERDDGADAAAAKAAGRRRAKRLPGQR 318 (355) T ss_pred CCCCCCEEEecCcC-hhHHHHHHHHHHHHhCCCccccHHHHHHHHHHhCCCCCCCCCcccCCccccccccccccccCCcc Confidence 11112233333333 3556789999999999997664 47999999866555544333221 000000000000 0 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 400 KGGDKNVNES 409 (409) Q Consensus 400 ~gg~~n~~~~ 409 (409) .+++...... T Consensus 319 ~~~~~~a~~~ 328 (355) T protein:vir:78 319 QGAALPSRSP 328 (355) T ss_pred ccccccccCC Confidence 0001111000 No 135 >protein:vir:78589 Length: 695 # NCBI annotation: NUDIX hydrolase # Family: family:all:297 # MgeID: mge:1854 # MgeName: BcepNY3 # Cross-refs: genbank:acc:YP_001294854;genbank:gi:149882917;genbank:GeneID:5291060 Probab=99.52 E-value=3.6e-14 Score=94.30 Aligned_cols=395 Identities=14% Similarity=0.052 Sum_probs=201.2 Q ss_pred Ccchhhhhhhhhhhhcc---cccCcccccccccc--------cCCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCcee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN---WIDQSASKLYDFSP--------WKNKSFWGV-INNTLETNETIFSAITKLSNSMASLPLK 68 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~~--------~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 68 (409) =....-+.+..+..... ..........+|.. +.+.+|.++ ......++|-+++|+..||+.+.+- |. T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 141 (695) T protein:vir:78 63 PSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 141 (695) T ss_pred CCcccccceeceeccccCCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 00111111111111100 01111111112211 111122222 2345677889999999999998765 42 Q ss_pred E-eecccc----------------ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec------------- Q lcl|Aclame:pro 69 M-YEDYKV----------------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD------------- 118 (409) Q Consensus 69 ~-~~~~~~----------------~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~------------- 118 (409) - .....+ -+.+....|...-..+.-+..|.+.+.+.. ++|-+.+++.-. T Consensus 142 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erL~V~~~l~eaik~aR-lfGGa~~~i~i~gdd~~l~~PL~~~ 220 (695) T protein:vir:78 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPR 220 (695) T ss_pred eeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccceEEEEEeccCccccccccccc Confidence 2 111000 011333445544444444555555555555 455555444221 Q ss_pred ----CCCceeEEEeeCCcceEEEEc--------CCcceeEEEEEcCCCeEEEEccceEEEecCcC------ccccccccc Q lcl|Aclame:pro 119 ----IYHQPSKLFLLNPDVVEMLIE--------NQSRELYYSIHAATGNKLIVHNMDMLHFKHIV------ASNMVQGIS 180 (409) Q Consensus 119 ----~~G~~~~l~~l~p~~v~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~~~~~~G~s 180 (409) ..|....|.+++|..+++... +.+...+|.+. |. .+-.+-++.|.... +...+.|.| T Consensus 221 ~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G~--kIH~SRL~~f~g~plPd~LKp~y~~~GiS 295 (695) T protein:vir:78 221 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GT--EVHATRLHTIVSRPVGDMLKPTYSFAGIS 295 (695) T ss_pred cccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---ce--EEeeeeEEEecCCCchhhhhcccccCccc Confidence 134566788999988887542 23445555553 22 34444444443221 223356999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecC--CcCCHHHHHHHHHH--HHHHhcCCCceeecC-CCceeeeccCCh Q lcl|Aclame:pro 181 PIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYG--SNVSTEKRQQVLED--FKQYYEENGGILFQE-PGVEIEPLPKKY 255 (409) Q Consensus 181 p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~vl~-~g~~~~~l~~~~ 255 (409) ..+.+...+.....+..........-....++.+ ..+.......+..+ +-+++.+..++.+++ ...+|.+.+.+. T Consensus 296 v~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~stsl 375 (695) T protein:vir:78 296 MTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPL 375 (695) T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceEEEeccc Confidence 9998888876655544333222111000000111 11122222223333 334555555677777 478899988766 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCC-cccCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcc Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNA-RSNTNFAKNEELNRFYLQ-------HTLLPIVKQYEEEFNRKLLTKTDRE 327 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~-~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~ln~~ll~~~~~~ 327 (409) ..++ +......++||.+-+||...|-+ .-+|-.++.|...+.||. .-|.|.++.+-+.|-+..|... . T Consensus 376 SGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i--d 451 (695) T protein:vir:78 376 SGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV--D 451 (695) T ss_pred CCHH--HHHHHHHHHHHhhhcCchhhhhccCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C Confidence 6554 55556778899999999977644 344444566655555554 4678988888888877776542 2 Q ss_pred ccceEEecchhhhhhhHHHHHHH-------HHHHHhcCCcCHHHHHHHhCCCCC-------CCCCEEeecccc-cchhcc Q lcl|Aclame:pro 328 KNRYFKFNVKSYLRADSATQAEV-------YFKAVRSGYYTINDIREWEDLPPV-------EGGDKPLISGDL-YPIDTP 392 (409) Q Consensus 328 ~~~~~~~d~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~-------~~gd~~~~~~n~-~~~~~~ 392 (409) ..|.|.+.+|...+.+++++. ...++..|+++++|+|.++.-+|- +-.|.+-++... ++.. . T Consensus 452 --pdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~-~ 528 (695) T protein:vir:78 452 --PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV-L 528 (695) T ss_pred --CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh-H Confidence 246666777777776666654 456778999999999999877652 112333222221 0000 0 Q ss_pred cccccccCCCCCCCC----CC Q lcl|Aclame:pro 393 LELRKSLKGGDKNVN----ES 409 (409) Q Consensus 393 ~~~~~~~~gg~~n~~----~~ 409 (409) .-.+...+|++.+.- .| T Consensus 529 ~~~~~~~~~~~~~~~~~~~~g 549 (695) T protein:vir:78 529 TYVQRLAEGGDTGAPGGARAG 549 (695) T ss_pred hhhcCcccccccCCCCCCCCC Confidence 000111122222211 11 No 136 >protein:vir:101541 Length: 694 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:1477 # MgeName: Bcep43 # Cross-refs: genbank:acc:NP_958122;genbank:gi:41057668;genbank:GeneID:2716798 Probab=99.52 E-value=4.2e-14 Score=93.93 Aligned_cols=395 Identities=14% Similarity=0.055 Sum_probs=200.6 Q ss_pred Ccchhhhhhhhhhhhccc---ccCccccccccccc--------CCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCcee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNW---IDQSASKLYDFSPW--------KNKSFWGV-INNTLETNETIFSAITKLSNSMASLPLK 68 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~---~~~~~~~~~~~~~~--------~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 68 (409) =....-+.+..+...... .........+|... .+.+|.++ ......++|-+++|+..||+.+.+- |. T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 140 (694) T protein:vir:10 62 PSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 140 (694) T ss_pred CCcchhhhhhccccccCCCccccchhhhhhccCcccccchhhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 000111111111111000 00001111111111 11122222 2345677889999999999998765 42 Q ss_pred E-eecccc----------------ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec------------- Q lcl|Aclame:pro 69 M-YEDYKV----------------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD------------- 118 (409) Q Consensus 69 ~-~~~~~~----------------~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~------------- 118 (409) - .....+ -+.+....|...-..+.-+..|.+.+.+.. ++|-+.+++.-. T Consensus 141 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eaik~aR-lfGGa~~~i~I~gdd~~l~~PL~~~ 219 (694) T protein:vir:10 141 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPR 219 (694) T ss_pred eeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccceEEEEEeecCccccccccccc Confidence 2 111000 011333445544444444555555555555 455555444221 Q ss_pred ----CCCceeEEEeeCCcceEEEEc--------CCcceeEEEEEcCCCeEEEEccceEEEecCcC------ccccccccc Q lcl|Aclame:pro 119 ----IYHQPSKLFLLNPDVVEMLIE--------NQSRELYYSIHAATGNKLIVHNMDMLHFKHIV------ASNMVQGIS 180 (409) Q Consensus 119 ----~~G~~~~l~~l~p~~v~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~~~~~~G~s 180 (409) ..|....|.+++|..+++... +.+...+|.+. |. .+-.+-++.|.... +...+.|.| T Consensus 220 ~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G~--~IH~SRL~~f~g~plPd~LKp~y~~~G~S 294 (694) T protein:vir:10 220 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GT--EVHATRLHTIVSRPVGDMLKPTYSFAGIS 294 (694) T ss_pred cccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---ce--EEeeeeEEEecCCCchhhhhcccccCccc Confidence 134566788999988887542 23445555553 22 34444444443221 223356999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecC--CcCCHHHHHHHHHH--HHHHhcCCCceeecC-CCceeeeccCCh Q lcl|Aclame:pro 181 PIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYG--SNVSTEKRQQVLED--FKQYYEENGGILFQE-PGVEIEPLPKKY 255 (409) Q Consensus 181 p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~vl~-~g~~~~~l~~~~ 255 (409) ..+.+...+.....+..........-....++.+ ..+.......+..+ +-+++.+..++.+++ ...+|.+.+.+. T Consensus 295 v~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~~L~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~stsl 374 (694) T protein:vir:10 295 MTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPL 374 (694) T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceEEEeccc Confidence 9998888776655544333221111000000111 11122222223333 334555555677777 478899988766 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCC-cccCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcc Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNA-RSNTNFAKNEELNRFYLQ-------HTLLPIVKQYEEEFNRKLLTKTDRE 327 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~-~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~ln~~ll~~~~~~ 327 (409) ..++ +......++||.+-+||...|-+ .-+|-.++.|...+.||. .-|.|.++.+-+.|-+..|... . T Consensus 375 SGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i--d 450 (694) T protein:vir:10 375 SGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV--D 450 (694) T ss_pred CCHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C Confidence 6554 55556778899999999977644 344444566655555554 4678888888888877776542 2 Q ss_pred ccceEEecchhhhhhhHHHHHHH-------HHHHHhcCCcCHHHHHHHhCCCCC-------CCCCEEeecccc-cchhcc Q lcl|Aclame:pro 328 KNRYFKFNVKSYLRADSATQAEV-------YFKAVRSGYYTINDIREWEDLPPV-------EGGDKPLISGDL-YPIDTP 392 (409) Q Consensus 328 ~~~~~~~d~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~-------~~gd~~~~~~n~-~~~~~~ 392 (409) ..|.|.+.+|...+.+++++. ...++..|+++++|+|.++.-+|- +-.|.+-++... ++.. . T Consensus 451 --p~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~-~ 527 (694) T protein:vir:10 451 --PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV-L 527 (694) T ss_pred --CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh-H Confidence 246666777777666666654 556778999999999999877652 112333222221 0000 0 Q ss_pred cccccccCCCCCCCCCC Q lcl|Aclame:pro 393 LELRKSLKGGDKNVNES 409 (409) Q Consensus 393 ~~~~~~~~gg~~n~~~~ 409 (409) .-.+...+|++.+.-.+ T Consensus 528 ~~~~~~~~~~~~~~~~~ 544 (694) T protein:vir:10 528 TYVQRLAEGGDTGAPGG 544 (694) T ss_pred hhhcCcccccccCCCCc Confidence 00011122222222111 No 137 >protein:vir:3648 Length: 695 # NCBI annotation: gp17 # Family: family:all:297 # MgeID: mge:75 # MgeName: Bcep781 # Cross-refs: genbank:acc:NP_705643;genbank:gi:23752328;genbank:GeneID:955749 Probab=99.50 E-value=5.5e-14 Score=93.29 Aligned_cols=395 Identities=14% Similarity=0.053 Sum_probs=199.5 Q ss_pred Ccchhhhhhhhhhhhcc---cccCcccccccccc--------cCCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCcee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN---WIDQSASKLYDFSP--------WKNKSFWGV-INNTLETNETIFSAITKLSNSMASLPLK 68 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~~--------~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 68 (409) =....-+.+..+..... ..........+|.. +.+.+|.++ ......++|-+++|+..|++.+.+- |. T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 141 (695) T protein:vir:36 63 PSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 141 (695) T ss_pred CCcccccceeceecccccCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 00111111111111100 00011111112211 111122222 2345677888999999999998765 42 Q ss_pred E-eecccc----------------ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec------------- Q lcl|Aclame:pro 69 M-YEDYKV----------------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD------------- 118 (409) Q Consensus 69 ~-~~~~~~----------------~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~------------- 118 (409) - .....+ -+.+....|...-..+.-+..|.+.+.+.. ++|-+.+++.-. T Consensus 142 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqik~L~~e~erL~V~~~l~eaik~aR-lfGGa~~~i~i~gdd~~l~~PL~~~ 220 (695) T protein:vir:36 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQ-AFGRAHPYFKIKGDDQIMDTPLVPR 220 (695) T ss_pred eecccchhhhhhccccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccceEEEEEeccCccccccccccc Confidence 2 111000 011233445444444444445555555544 566555444221 Q ss_pred ----CCCceeEEEeeCCcceEEEEc--------CCcceeEEEEEcCCCeEEEEccceEEEecCcC------ccccccccc Q lcl|Aclame:pro 119 ----IYHQPSKLFLLNPDVVEMLIE--------NQSRELYYSIHAATGNKLIVHNMDMLHFKHIV------ASNMVQGIS 180 (409) Q Consensus 119 ----~~G~~~~l~~l~p~~v~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~~~~~~G~s 180 (409) ..|....|.+++|..+++... +.+...+|.+. |. .+-.+-++.|.... +...+.|+| T Consensus 221 ~~~I~kGslKGl~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G~--kIH~SRL~~f~g~plPd~LKp~y~~~GiS 295 (695) T protein:vir:36 221 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GT--EVHATRLHTIVSRPVGDMLKPTYSFAGIS 295 (695) T ss_pred cccccCcceeeeEeecccccccchhhhccchhhccCCCceEEEe---ce--EEeeeeEEEecCCCchhhhhcccccCccc Confidence 134566788999988887542 23445555553 22 34444444443221 223356999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecC--CcCCHHHHHHHHH--HHHHHhcCCCceeecC-CCceeeeccCCh Q lcl|Aclame:pro 181 PIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYG--SNVSTEKRQQVLE--DFKQYYEENGGILFQE-PGVEIEPLPKKY 255 (409) Q Consensus 181 p~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~vl~-~g~~~~~l~~~~ 255 (409) ..+.+...+.....+..........-....++.+ ..+.......+.. ++-+++.+..++.+++ ...+|.+.+.+. T Consensus 296 v~q~~~e~V~~~~rT~~~v~~Li~~~~v~~lk~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~stsl 375 (695) T protein:vir:36 296 MTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALMPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPL 375 (695) T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHhhcChhHHHHHHHHHHHHHhcCccceEEEecCCcceEEEeccc Confidence 9988888776655444333221110000000111 1111222222333 3334555555677777 478899988766 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCC-cccCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcc Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNA-RSNTNFAKNEELNRFYLQ-------HTLLPIVKQYEEEFNRKLLTKTDRE 327 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~-~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~ln~~ll~~~~~~ 327 (409) ..++ +......++||.+-+||...|-+ .-+|-.++.|...+.||. .-|.|.++.+-+.|-+..|... . T Consensus 376 SGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i--d 451 (695) T protein:vir:36 376 SGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV--D 451 (695) T ss_pred CCHH--HHHHHHHHHHHhhhcCchhhhhccCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C Confidence 6554 55556778899999999977644 344444566655555554 4678988888888877776542 2 Q ss_pred ccceEEecchhhhhhhHHHHHHH-------HHHHHhcCCcCHHHHHHHhCCCCC-------CCCCEEeecccc-cchhcc Q lcl|Aclame:pro 328 KNRYFKFNVKSYLRADSATQAEV-------YFKAVRSGYYTINDIREWEDLPPV-------EGGDKPLISGDL-YPIDTP 392 (409) Q Consensus 328 ~~~~~~~d~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~-------~~gd~~~~~~n~-~~~~~~ 392 (409) ..|.|.+.+|...+.+++++. ...++..|+++++|+|.++.-+|- +-.|.+-++... ++.. . T Consensus 452 --pdi~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~D~~d~p~~~~~~~~~~~-~ 528 (695) T protein:vir:36 452 --PSIKWQWNALRELDDLEVAESRYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGVPADDDIDGV-L 528 (695) T ss_pred --CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhcCCCcccccccccccCCCcCccchhhhh-H Confidence 246666777777766666654 456778999999999999877652 112333222221 0000 0 Q ss_pred cccccccCCCCCCCCCC Q lcl|Aclame:pro 393 LELRKSLKGGDKNVNES 409 (409) Q Consensus 393 ~~~~~~~~gg~~n~~~~ 409 (409) .-.+...+|++.+.-.+ T Consensus 529 ~~~~~~~~~~~~~~~~~ 545 (695) T protein:vir:36 529 TYVQRLAEGGDTGAPGG 545 (695) T ss_pred hhhcCcccccccCCCCc Confidence 00011122222222211 No 138 >protein:vir:106716 Length: 698 # NCBI annotation: gp18 # Family: family:all:297 # MgeID: mge:1599 # MgeName: Bcep1 # Cross-refs: genbank:acc:NP_944326;genbank:gi:38638625;genbank:GeneID:2657345 Probab=99.46 E-value=1.4e-13 Score=91.08 Aligned_cols=395 Identities=14% Similarity=0.058 Sum_probs=201.2 Q ss_pred Ccchhhhhhhhhhhhcc---cccCcccccccccc--------cCCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCcee Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDN---WIDQSASKLYDFSP--------WKNKSFWGV-INNTLETNETIFSAITKLSNSMASLPLK 68 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~---~~~~~~~~~~~~~~--------~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 68 (409) =....-+.+..+..... ..........+|.. +.+.+|.++ ......++|-+++|+..|++.+.+- |. T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~F~Gy~~la~laQ~~eyr~~~~~ia~e~~R~-w~ 141 (698) T protein:vir:10 63 PSPSLRLARQFEVDVSNYTPRERRAASYALDFNGTSMDALSFVTSSGFPGFPTLVLLAQLPEYRAMHEVLADECIRT-WG 141 (698) T ss_pred CCccccccccceeccccCCccccchhhhhhcccccccccchhhhccCcchHHHHHHHhhccchhhHHHHHHHHhhcc-cc Confidence 01111111111111100 01111111112211 111122222 2345677889999999999998765 42 Q ss_pred E-eecccc----------------ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee-------------- Q lcl|Aclame:pro 69 M-YEDYKV----------------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER-------------- 117 (409) Q Consensus 69 ~-~~~~~~----------------~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~-------------- 117 (409) - .....+ -+.+....|...-..+.-+..+.+.+.+..+ +|-+.+++.- T Consensus 142 ~~~~~~~e~~~~~g~~~~~~~~~~~d~dqi~~L~~e~erl~V~~~l~eai~~aRl-fGGa~~~i~I~gdd~~l~~PL~~~ 220 (698) T protein:vir:10 142 EAIGGTKEKADTSGLAAGGNAASTSDGDQLKQINDEIERLRIRDAVRTTVIHDQA-FGRAHPYFKIKGDDQIMDTPLVPR 220 (698) T ss_pred eeccccchhhhhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccceEEEEEeecCccccccccccc Confidence 2 111000 0113334455444444445555565555554 5555444421 Q ss_pred ---cCCCceeEEEeeCCcceEEEEc--------CCcceeEEEEEcCCCeEEEEccceEEEecCcC------ccccccccc Q lcl|Aclame:pro 118 ---DIYHQPSKLFLLNPDVVEMLIE--------NQSRELYYSIHAATGNKLIVHNMDMLHFKHIV------ASNMVQGIS 180 (409) Q Consensus 118 ---~~~G~~~~l~~l~p~~v~~~~~--------~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~------~~~~~~G~s 180 (409) ...|....|.+++|..+++... +++...+|.+. |. .+-.+-++.|.... +...+.|.| T Consensus 221 ~~~I~kGslKGL~ViDp~~vtP~~~n~~dP~spdfgkP~~y~V~---G~--~IH~SRL~~~vg~pvpd~LKp~y~f~G~S 295 (698) T protein:vir:10 221 PYTVPKGSFQGLRVVEPYWVTPNNYNSINPVADDFYKPSTWWMI---GS--EVHATRLHTIVSRPVGDMLKPTYSFAGIS 295 (698) T ss_pred cccccCccceeeeeecccccccchhhhccchhhccCCCceEEEe---cc--eecceeEEEecCCCchhhhcchhccCCcc Confidence 1134456788899988887542 23445555554 22 34445444443321 223346999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CceeEEecCCcCCHHHHHHHHHHH--HHHhcCCCceeecC-CCceeeeccCCh Q lcl|Aclame:pro 181 PIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYGSNVSTEKRQQVLEDF--KQYYEENGGILFQE-PGVEIEPLPKKY 255 (409) Q Consensus 181 p~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~vl~-~g~~~~~l~~~~ 255 (409) ..+.+...+.....+.......... -.......-..++......+..++ -+++.+..++.+++ .+.+|++.+.+. T Consensus 296 v~q~~~e~V~~~~rT~~~v~~Li~~~~~~~l~~dla~aL~~g~~~~l~~R~eli~~~Rsn~G~~llDk~~Eefeq~st~l 375 (698) T protein:vir:10 296 MTQLAMPYIDNWLRTRQSVSDIVKQFSVSGILMDLAQALTPGANVDLSMRAELINRYRDNRNILFLDKATEEFFQFNTPL 375 (698) T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHhcCChhhHHHHHHHHHHHHhcCccceEEEecCCcceEEEecCc Confidence 9998888877655544332221100 000000000112222223343333 34555555677777 578899988766 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCC-cccCccccHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhcChhhcc Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNA-RSNTNFAKNEELNRFYLQ-------HTLLPIVKQYEEEFNRKLLTKTDRE 327 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~-~~~~~~~~~e~~~~~~~~-------~~l~P~~~~ie~~ln~~ll~~~~~~ 327 (409) ..++ +......++||.+-+||...|-+ .-.|-.++.|...+.||. .-|.|.++.+-+.|-+..|... . T Consensus 376 SGLd--dVi~qf~q~VAgaa~IPltkLfGqSPkGlNATGE~D~rnYYD~I~s~Qe~~L~p~L~rl~~ii~rS~~G~i--d 451 (698) T protein:vir:10 376 SGLD--ALQAQAQEQMSAVSHIPLIKLLGITPTGLNASSEGEIRVWYDYVRAYQRNALQQLMNDVIVMIQLSLFGAV--D 451 (698) T ss_pred CCHH--HHHHHHHHHHHhhhcCchhhhhccCCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C Confidence 6554 55566778999999999977644 344444566655555554 4678888888888877776542 2 Q ss_pred ccceEEecchhhhhhhHHHHHHH-------HHHHHhcCCcCHHHHHHHhCCCCCC-------CCCEEeeccc-ccchhcc Q lcl|Aclame:pro 328 KNRYFKFNVKSYLRADSATQAEV-------YFKAVRSGYYTINDIREWEDLPPVE-------GGDKPLISGD-LYPIDTP 392 (409) Q Consensus 328 ~~~~~~~d~~~l~~~d~~~~~~~-------~~~~~~~g~~T~NE~R~~~g~~p~~-------~gd~~~~~~n-~~~~~~~ 392 (409) ..|.|.+.+|...+.++++++ ...++..|+++++|+|.++.-+|-- --|.+..|.. .++.. . T Consensus 452 --p~i~~~fnPL~qmtd~EkAeI~~k~A~~d~~~~~~gvI~~~evr~rL~~d~~s~Y~~~~d~~d~p~~~~~~~~~~~-~ 528 (698) T protein:vir:10 452 --PSIKWQWNALRELDDLEVAEARYKQAQSDVLYVQEQVIRPDQVAARLNTEPDGPYAGKLDANDDPGAPADDDIDGV-L 528 (698) T ss_pred --CcceEEeCCCCCcCHHHHHHHHhhhhHHHHHHHHhcCCCHHHHHHHHhccCCCccccccCCcccCCCCCCCcchHH-H Confidence 246667777777777666664 4567788999999999998665421 1122222221 11100 0 Q ss_pred cccccccCCCCCCC-CCC Q lcl|Aclame:pro 393 LELRKSLKGGDKNV-NES 409 (409) Q Consensus 393 ~~~~~~~~gg~~n~-~~~ 409 (409) ...+...+||+... .+. T Consensus 529 ~~~~~~~~~~~~~~~~~~ 546 (698) T protein:vir:10 529 TYVQRMAEGGDTGAPTAP 546 (698) T ss_pred hhhcCCcCCCCccccccc Confidence 00112223333222 111 No 139 >protein:vir:105782 Length: 449 # NCBI annotation: gp5 # Family: family:all:6783 # MgeID: mge:1501 # MgeName: ES18 # Cross-refs: genbank:acc:YP_224143;genbank:gi:62362218;genbank:GeneID:3342535 Probab=99.44 E-value=1.9e-13 Score=90.36 Aligned_cols=376 Identities=11% Similarity=0.088 Sum_probs=177.3 Q ss_pred Ccchhhhhhhhhh-------------hhcccccCccccccccccc--C-CCCccccchhHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MAKENIVTRIKKK-------------LIDNWIDQSASKLYDFSPW--K-NKSFWGVINNTLETNETIFSAITKLSNSMAS 64 (409) Q Consensus 1 M~~~~~~~r~~~~-------------~~~~~~~~~~~~~~~~~~~--~-~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 64 (409) |... +++..+. +.+...+....+-..|..+ + ..++.. -...|..++.++.+|+.+++.+-. T Consensus 1 ~~~~--~~~~~~~~~~~~~~~~~rd~l~~~~~glg~~r~~~~~~~g~~~~~~~~~-l~~~Yr~~~ia~~iVd~~~d~~~~ 77 (449) T protein:vir:10 1 MTDK--LTLAVNHALNDARMARARMGLMVPTMGLDNKRHSAWCEYGFPELVTYEN-LYSLYRRGGIAHGAVEKLVGKCWQ 77 (449) T ss_pred Cchh--hHHHHhhhcchhHHHHHHHHHHHHHhcCCcccchhhhhcCCcccCCHHH-HHHHHhcCchhHHHHHhhhhhhhh Confidence 4432 2221111 1111111111110011111 0 111111 133577788999999999987632 Q ss_pred CceeEeeccccccch--h--hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee-ecCC---------CceeEEEeeC Q lcl|Aclame:pro 65 LPLKMYEDYKVVNTE--V--SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIY---------HQPSKLFLLN 130 (409) Q Consensus 65 lp~~~~~~~~~~~~~--~--~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~-~~~~---------G~~~~l~~l~ 130 (409) --..+....+..... . ...+. +-+...-+..+.+..-+ -.++|-+.+++. ++.. +.+..+.|+. T Consensus 78 ~~~~i~~g~~~~~~~~~~~~e~~~~-~l~~~~~~~~l~ea~~~-~rl~Gga~i~i~v~d~~~l~~Pl~~~~~i~~i~v~~ 155 (449) T protein:vir:10 78 TNPEIIEGDDADDSEDETSWEKKSK-QVFTNRLWRSFAEADRR-RLVGRYAGILLHIRDEKDWNLPATKGRGLQKVSVSW 155 (449) T ss_pred cCcccccCccccchhhhHHHHHHHH-HHHHHHHHHHHHHHHHh-hhccCcEEEEEEecCCCCCCcccccCcceeeEEeec Confidence 211222222211111 1 11111 00001112233333333 345776666653 3322 2455666666 Q ss_pred CcceEEEE-------cCCcceeEEEEEcC----CCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHH-H Q lcl|Aclame:pro 131 PDVVEMLI-------ENQSRELYYSIHAA----TGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRT-F 198 (409) Q Consensus 131 p~~v~~~~-------~~~~~~~~~~~~~~----~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~-~ 198 (409) ...+++.. ...|...+|.+... ....+.+-++-|+||... +.-|.|.++.+.+.+.....+.. + T Consensus 156 ~~~i~~~~~~~dp~sp~yg~P~~y~v~~~~~g~~~~~~~iH~SRl~~~~~~----~~~g~~~L~~~yn~l~~~~~~~~~~ 231 (449) T protein:vir:10 156 AGSLKVAEWDTGINSKTYGQPKLWKYTERLPNGSSRRVDIHPDRVFILGDY----SEDAIGFLEPAYNAFVSLEKVEGGS 231 (449) T ss_pred cccCChhhhhcCCCCCCCCCceEEEEeeeccCCCccceeeccceeEeecCC----CCCChhHHHHHHHHhhhHHHhhhhH Confidence 55444331 22366667766532 123346778888887432 23377778877664422221110 0 Q ss_pred ------------HHHhcCC-CceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 199 ------------NLTEMQK-PDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 199 ------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ...+-.. ....+....+.-.++..+++.++.+....+.+ .+.++.+.+|+.++.++.+. .+... T Consensus 232 a~~~l~~~~rq~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~i~~~~d~~~~~~~~sgl--~d~l~ 308 (449) T protein:vir:10 232 GESFLKNAARQLNVNFEKEIDFTNLASLYGVSIDELQDKFNEVAGEINRGND-VLMTTQGATVTPLVTSVADP--TATYN 308 (449) T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhHHhhCCchHHHHHHHHHHHHHhccch-heeecCCcceEEEecccCCh--hHHHH Confidence 0000000 00000111111233334455555544444444 34556777899988877755 45566 Q ss_pred HHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcChhhccccceEEecchhh Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQH------TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSY 339 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~------~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l 339 (409) ...++||++-|||...|-+...+..++.++ .+.|+.. -+.|.++.+-+.|-+.-+.. ....+.|.+.+| T Consensus 309 ~~~q~iaaa~~IP~t~L~Gqsp~glnst~D-~~nyyd~i~~~Q~~l~p~le~l~~~l~~s~~g~----~~~d~~i~f~pL 383 (449) T protein:vir:10 309 VNLQTAAAGVDIPTRILIGNQQAERSSTED-QKYFNARCQSRRVDLSFEIEDFCDKLIELKIID----AVAKKAVIWDDL 383 (449) T ss_pred HHHHHHHHHhCCCeeeeeccCccccccchh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCC----CCCceeEEeCCC Confidence 678889999999998886655544444443 3334432 24566666555554433221 112466677788 Q ss_pred hhhhHHHHHH-------HHHHHHhcC---CcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 340 LRADSATQAE-------VYFKAVRSG---YYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 340 ~~~d~~~~~~-------~~~~~~~~g---~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ...+.+++++ ++++++++| +++.+|+|+.+|++|..+ + ++....+ + .+..+.|. T Consensus 384 ~~~t~kEkAei~k~~A~a~~~~~~ag~~~~~~~~EiR~~~~~~~~~~-~---------~~~~e~~-d-----e~~~~~d~ 447 (449) T protein:vir:10 384 NEQTGTEKLTNAKTMGEINQTMLGSGDNPAFSREEIRTAAGYDNDDE-E---------PLGEEDG-D-----EEDKATDS 447 (449) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHccccCCcCHHHHHHHhcccCCCC-C---------CCCCCCC-c-----cccccCCc Confidence 8888888855 445666666 899999999999988532 2 1110000 0 00111111 No 140 >protein:vir:106027 Length: 629 # NCBI annotation: gp9 # Family: family:all:2798 # MgeID: mge:1505 # MgeName: Cooper # Cross-refs: genbank:acc:YP_654906;genbank:gi:109392362;genbank:GeneID:4157055 Probab=99.09 E-value=8.3e-11 Score=75.85 Aligned_cols=401 Identities=14% Similarity=0.108 Sum_probs=206.7 Q ss_pred Ccchhh--hhhhhhhhhcccccCcccccccccccCCCCccccchh---------HHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENI--VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINN---------TLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |.-..+ ..|-|..-....+- .+....+++.....+..+.+.+ -|-..+.++-.+..++++++++.+.. T Consensus 1 ma~~~lrv~rrpk~~p~~r~l~-aasqp~~P~~~~~~~~~g~~~~~~WQ~eAW~~~d~VgElryyvgW~~ss~Sr~rL~a 79 (629) T protein:vir:10 1 MAASTLRVSRRPKGSPARRSLT-AASQPMEPGRTPSRQVAGTVVRTSWQNEAWECMDLVGELRYYVGWRASSCSRVELIA 79 (629) T ss_pred CCccceeEEecCCCccceeeec-cccCCCCcchhhchhhhhhhhhhhhhHHHHHHHHhhhhHHHHhhhhhhhheeeeEEE Confidence 887654 33333321111110 1111223322222222222211 23344778888899999999999887 Q ss_pred eecccc-------c--cchh----hhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCce----e-EEEeeCC Q lcl|Aclame:pro 70 YEDYKV-------V--NTEV----SDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP----S-KLFLLNP 131 (409) Q Consensus 70 ~~~~~~-------~--~~~~----~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~----~-~l~~l~p 131 (409) -.-+.. . +++. ...+..-...-+...++++.+..++-+-|+.|+++..-..+.+ . +.+.|.. T Consensus 80 s~idpDtg~ptg~i~ed~p~~~~v~~~v~~iagG~lGqaqLlkr~~~~ltV~GE~~i~il~~~~~~pd~~~r~~W~vVt~ 159 (629) T protein:vir:10 80 SELDPDTGKPTGGIRDDDPDGLRFLEIVKTMAGGPLGQAQLQKRAAECLTVPGEHRICLLDQGDKNPDGSVRHNWYVVTN 159 (629) T ss_pred eeecCCCCCCccccccCchhHHHHHHHHHHhcCccchHHHHHHHHHhheeccCceEEEEeecCCCCCCcccccceeeecH Confidence 653311 1 1111 1223333445577788999999999999999999875444432 2 2233333 Q ss_pred cceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEecC--cCcccccccccHHHHHHHHHHHHHHHHHH--H---HHhcC Q lcl|Aclame:pro 132 DVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKH--IVASNMVQGISPIDVLKNTTDFDNAVRTF--N---LTEMQ 204 (409) Q Consensus 132 ~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~--~~~~~~~~G~sp~~~~~~~i~~~~~~~~~--~---~~~~~ 204 (409) ..+. .+|.- +..+...+|...+|..+.=+.+|- +.|.....--||+.+|...+.--.-+.+. + .+..+ T Consensus 160 ~Ei~----~kg~g-~~~i~lpdg~~he~~~~~D~l~RvW~P~Prr~~e~DSpvra~l~~lrEi~r~tk~i~~aakSRL~g 234 (629) T protein:vir:10 160 DEVK----NKGAG-KTDIELPDGTIHEYSKGRDVMFRVWNPRPRRAKEPDSPVRACLDSLREIIRTTKKIRNASKSRLIG 234 (629) T ss_pred HHhc----cccCc-eeEEEcCCCceeeeeCCCeeEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHhHHhh Confidence 3322 22211 124666777777776554444453 44455566889999998887644433322 1 22334 Q ss_pred CCceeEEe---cC------CcC----------CHHHHHHHHHHHH----HHhc--CCC--ce-eecC-CC---ceeeecc Q lcl|Aclame:pro 205 KPDSFMLK---YG------SNV----------STEKRQQVLEDFK----QYYE--ENG--GI-LFQE-PG---VEIEPLP 252 (409) Q Consensus 205 ~~~~~~~~---~~------~~~----------~~~~~~~~~~~~~----~~~~--~~~--~~-~vl~-~g---~~~~~l~ 252 (409) ||..++-. .+ +.. .....+.+...|- ..+. ++. -+ +++. .| -+++.+. T Consensus 235 nGvlflP~e~slp~~~ap~~~~~Pg~~~p~~~g~aa~d~l~~~l~q~a~aAi~De~S~aA~vPiia~vP~E~l~~ikhLk 314 (629) T protein:vir:10 235 NGVVFLPQELSLPRATAPVADNQPGAPVPIVDGVAAADELSNLLFQTAAAAVDDEDSQAALIPLLATVPGEHLQKIFHLK 314 (629) T ss_pred CceeEeccCcccccccCCCCCCCCcccccccCCCcchHHHHHHHHHHHHhhhcCCCCccceeeeEEeechHHhcCeeeee Confidence 43221110 00 000 1123334444333 3332 222 12 2221 12 2355555 Q ss_pred CC-hhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChh-----h Q lcl|Aclame:pro 253 KK-YVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT-----D 325 (409) Q Consensus 253 ~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~-----~ 325 (409) .. ..+---+.+++-.+.++|+.+.|||..|-+. .++|--+.=+-...-++.-|.|.+..|+++|++.+|.+- . T Consensus 315 f~~eite~~iktR~daI~RlAmglDispErLLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~Ait~~~Lrp~L~~eGi 394 (629) T protein:vir:10 315 IGNEITEVEIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVQLHIKPVMEVLCAAIYREVLVATLRAEGI 394 (629) T ss_pred ecCchhHHHHhhHHHHHHHHHhccCCChhheeeccCCccceeeEEecccceeeecchHHHHHHHHHHhHHHHHHHHHhCC Confidence 43 2333357889999999999999999877554 344422222222234556789999999999999988652 2 Q ss_pred ccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC-------------EEeeccccc----c Q lcl|Aclame:pro 326 REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD-------------KPLISGDLY----P 388 (409) Q Consensus 326 ~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd-------------~~~~~~n~~----~ 388 (409) ....|.+-||.+.|.. +... .+-+..+.+.|.+|-...|+.+|+...++=| .+.-+.+++ | T Consensus 395 Dp~~Yvvw~DaS~Lt~-dPd~-~deA~~a~drGaIt~eAlRr~lG~~~dd~y~~~t~~~~q~~A~~~v~~~P~Li~~~ap 472 (629) T protein:vir:10 395 DPDRYVLWYDASGLTV-DPDK-TDEATAAKEQGAITHEAYRRYLGLADEDGYDLETLEGAQAWARDAIVADPSLIKVLAP 472 (629) T ss_pred CHHHhEeeecCccccc-CCCC-cHHHHHHHHcCCccHHHHHHHhccccccCCCcCCcHHHHHHHHHHhcCCCchhhhhhh Confidence 2344567888887653 2222 2333458889999999999999997543311 111111111 1 Q ss_pred h--------hcccccccccCCCCC---CCCCC Q lcl|Aclame:pro 389 I--------DTPLELRKSLKGGDK---NVNES 409 (409) Q Consensus 389 ~--------~~~~~~~~~~~gg~~---n~~~~ 409 (409) + +.+........|+++ +++++ T Consensus 473 ll~~~l~~i~~P~p~~a~~~~~~~~~~~E~~~ 504 (629) T protein:vir:10 473 LLTDELAEIDWPEPPAALPPGEDDQADEEQDT 504 (629) T ss_pred hcCCccccccccCCCCcCCCCCcccCccccCC Confidence 1 111111111112111 11111 No 141 >protein:vir:106491 Length: 646 # NCBI annotation: Pas4 # Family: family:all:2798 # MgeID: mge:1680 # MgeName: phiAsp2 # Cross-refs: genbank:acc:YP_024790;genbank:gi:48697405;genbank:GeneID:2846148 Probab=99.08 E-value=1.8e-10 Score=74.05 Aligned_cols=395 Identities=11% Similarity=0.041 Sum_probs=193.7 Q ss_pred Ccchhhhhhhhhhhh---------cccccCcccccc----cc-cccCCCCcccc-chhHHhhhHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MAKENIVTRIKKKLI---------DNWIDQSASKLY----DF-SPWKNKSFWGV-INNTLETNETIFSAITKLSNSMASL 65 (409) Q Consensus 1 M~~~~~~~r~~~~~~---------~~~~~~~~~~~~----~~-~~~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~l 65 (409) |.+. .-..+... ......++.--. .+ ++.+....+.. .=+-|-..+.++..++.|+++++++ T Consensus 1 ~~~~---rPk~~p~~p~~~~~arrr~LtaAsa~l~~~~~~~~kt~~~~~~~WQ~eAW~~~d~vpELry~vgW~~~a~SR~ 77 (646) T protein:vir:10 1 MALL---KPKSAPPEPFGAEVARRIALAGATAQVDLGASSSWKTWKFGNKDWQTEGWRLYDIIPEHHFLAGRIGDSVAQA 77 (646) T ss_pred Cccc---CCCCCCCCcccccccchhhhhhccccccCCCcceeecCCCcchhhhHHHHHHHhhhhhHhhHhhhhhhhhcee Confidence 5442 11111000 000000000000 00 00111111111 0112444588899999999999999 Q ss_pred ceeEeeccccc-------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee----ecCCCceeEEEeeCCcce Q lcl|Aclame:pro 66 PLKMYEDYKVV-------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE----RDIYHQPSKLFLLNPDVV 134 (409) Q Consensus 66 p~~~~~~~~~~-------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~----~~~~G~~~~l~~l~p~~v 134 (409) .+..-+-++.. .+....+.....-.-....++++.+..++-+-|++|++.. ....+ -...+++..+.| T Consensus 78 rL~aseiddtG~~tg~v~~~~v~~iv~~~~Gg~~gQ~qlLkr~~~~ltV~GE~wiv~~~~~~~~~~~-~~~W~vvt~~Ev 156 (646) T protein:vir:10 78 RLYVTEVDDTGEETGEVQDERIKRLAAVPLGTGSQRDDNLRLAGLDLAVGGECWIVGEGAATSPEAA-EGSWFVVTGSAI 156 (646) T ss_pred eeeeeeecCCCCCcCccchHHHHHHhhhhccchhhHHHHHHHHHhheecccceEEeeccccCCCCCC-ccceeeecHHHh Confidence 98886533221 1222223333333334557889999999999999998742 11112 223444544444 Q ss_pred EEEEcCCcceeEEEEEcCC---CeE-EEEccceEEEecC--cCcccccccccHHHHHHHHHHHHHHHHHH--HH---Hhc Q lcl|Aclame:pro 135 EMLIENQSRELYYSIHAAT---GNK-LIVHNMDMLHFKH--IVASNMVQGISPIDVLKNTTDFDNAVRTF--NL---TEM 203 (409) Q Consensus 135 ~~~~~~~~~~~~~~~~~~~---g~~-~~~~~~~vih~~~--~~~~~~~~G~sp~~~~~~~i~~~~~~~~~--~~---~~~ 203 (409) .. .|. .+.+.... |.. +.++..+++. |- +.|.....--||+.++...+.--.-+.+. +. +.. T Consensus 157 ~~----tg~--~~~i~~p~~~~g~~~v~~~~~d~lv-RiW~P~Prr~~epDSpvra~l~~l~Ei~~lt~~I~aaakSRL~ 229 (646) T protein:vir:10 157 SR----TGD--EIAVRRPQQRGGSKLVLVDGQDILI-RCWRPHPNDTDQADSFTRSAIVPLREIELLTKREFAELDSRLT 229 (646) T ss_pred cc----CCC--eeeeecCccCCCCCcceecCCceEE-EEecCCcccccCCcchhHHHHHHHHHHHHhhhHhHHHHHHHHh Confidence 22 121 22232222 333 4445566643 53 34555567889999998887644433332 21 223 Q ss_pred CCCceeE----EecCCcCCHHHHHHHHHHHHH----Hhc--CCC--c-eeecC-CCc------eeeeccCC-hhhHHHHH Q lcl|Aclame:pro 204 QKPDSFM----LKYGSNVSTEKRQQVLEDFKQ----YYE--ENG--G-ILFQE-PGV------EIEPLPKK-YVSEDIVA 262 (409) Q Consensus 204 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~--~~~--~-~~vl~-~g~------~~~~l~~~-~~d~~~~e 262 (409) ++|.-++ -.+-+...+.....+...|-+ .+. ++. - ++|+. .|. +++.++.. ..+.--+. T Consensus 230 GnGvLfvP~e~s~p~~~~~~a~~~~l~~~l~qaa~tAi~De~S~aA~vPiia~~P~E~i~~~~~ik~l~f~~eite~aik 309 (646) T protein:vir:10 230 GAGIMFLPEGVDFPRGEEDPAGLAGFMAYLQRAAAASMADQSRASAMVPIMATIPNEMMEHLDKIKPLTFWSELSAEITP 309 (646) T ss_pred cCceeeeccccccCCCCCCCcchhHHHHHHHHHHHhhhcCCCCccceeeeEEeeChHHHhhhhcceeeccCchhhHHHhh Confidence 3332211 011111222334444444433 332 222 1 23332 222 34444442 23344678 Q ss_pred HHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc------cccceEEecc Q lcl|Aclame:pro 263 SENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR------EKNRYFKFNV 336 (409) Q Consensus 263 ~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~------~~~~~~~~d~ 336 (409) +++-.+.++|..+.|||..|-+..++|-.+.=+-...-++ -|.|.+.-|+++|++.+|.+.-. ...+.+-||. T Consensus 310 tR~daI~RlA~glDIppE~LLGlgd~NHWtAWqI~de~vr-HI~P~l~~ic~AlT~~~Lrp~Le~eGi~dp~kyvvW~Da 388 (646) T protein:vir:10 310 MKDKAIARLASSAEIPGEVLTGIGDANHWTAWLISDEGIR-WIRGYLGLIADALTRGFLRRALESMGVTNPERYAFAFDT 388 (646) T ss_pred hHHHHHHHHHhccCCchhheeeccccceeeeeeeccccch-hhhhHHHHHHHHHHhhHHHHHHHHcCCCChhHeEEeecC Confidence 8999999999999999988855555553322222222233 49999999999999999865322 2345678998 Q ss_pred hhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCE-----------Eeecccc-------cchhccc----- Q lcl|Aclame:pro 337 KSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDK-----------PLISGDL-------YPIDTPL----- 393 (409) Q Consensus 337 ~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~-----------~~~~~n~-------~~~~~~~----- 393 (409) +.|... .. +.+.+..+.+.|.+|-...|+.+|+...++-+. .-.+.++ .+++.+. T Consensus 389 S~Lt~~-pd-~~deA~qa~drGAIt~eAlrk~~Gf~~dd~pt~~E~~~~~~~~~v~~~P~Lil~P~~qa~~~~P~~~~~~ 466 (646) T protein:vir:10 389 STLASK-PN-RLDEAIQLHERNLIKDEEVVKAGAFSVDQMPTVQERAVQILLGLVKTQPDLILDPAIQAALGLPAVQSVG 466 (646) T ss_pred cccccC-CC-CcHHHHHHHHcCCccHHHHHHHhcccccccCChHHHHHHHHHHHhcCCccccccchhhccccCCCcCccc Confidence 887532 22 233344588999999999999999975432121 1111111 1111111 Q ss_pred ---ccccccCCCCC-CCCCC Q lcl|Aclame:pro 394 ---ELRKSLKGGDK-NVNES 409 (409) Q Consensus 394 ---~~~~~~~gg~~-n~~~~ 409 (409) ...+...|+++ ++++| T Consensus 467 lpp~~~~~~dg~~~~~e~~g 486 (646) T protein:vir:10 467 LPPTAAQRTDGDLDDDESEG 486 (646) T ss_pred cCCcccccccCCCCChhhcC Confidence 00011111111 11111 No 142 >protein:vir:102426 Length: 631 # NCBI annotation: gp11 # Family: family:all:2798 # MgeID: mge:1618 # MgeName: Pipefish # Cross-refs: genbank:acc:YP_655288;genbank:gi:109521851;genbank:GeneID:4157741 Probab=98.99 E-value=1.4e-10 Score=74.58 Aligned_cols=401 Identities=14% Similarity=0.119 Sum_probs=206.1 Q ss_pred Ccch---hhhhhhhhhh--hcc-cccCcccccccccc------c-CCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCc Q lcl|Aclame:pro 1 MAKE---NIVTRIKKKL--IDN-WIDQSASKLYDFSP------W-KNKSFWGV-INNTLETNETIFSAITKLSNSMASLP 66 (409) Q Consensus 1 M~~~---~~~~r~~~~~--~~~-~~~~~~~~~~~~~~------~-~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp 66 (409) |.-- .+..|-|.+. ..+ ....++ ...+++. + +.+..+.. .=+-|-..+.++-.+..|+++++++. T Consensus 1 ~~a~~~lr~~rrpkg~~~a~~r~L~aAs~-~~~dpg~~~~~~~g~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~r 79 (631) T protein:vir:10 1 MAATQSLRLVRRPKGGRPAPSRALTAASQ-PLPDPSQVFSKSTGISRNSDWQTDAWEAVDLVGELRYYVGWRASSCSRCR 79 (631) T ss_pred CCcccceeeeecCCCCCccchhhhhhhhc-cccchhhhhhhhcCCcccchhhHHHHHHHHhhhhHHHHhhhhhhhhceee Confidence 5442 2233333211 000 000000 1111111 1 11111111 01124445888899999999999999 Q ss_pred eeEeecccc-------cc------chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee-ecCCCc---------- Q lcl|Aclame:pro 67 LKMYEDYKV-------VN------TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYHQ---------- 122 (409) Q Consensus 67 ~~~~~~~~~-------~~------~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~-~~~~G~---------- 122 (409) +..-+-+.. .. .........-+...+...++++.++.++-+-|++|+.+. +...|. T Consensus 80 L~as~idpDtg~ptg~iee~~~~~~~v~~~~~~i~gG~lgQ~~llkrl~~~ltV~GE~wiv~l~~p~~~~~~~pd~~~r~ 159 (631) T protein:vir:10 80 LVASELDENTGLPTGGISEDNTEGERVREIVSKIADGTLGQAALTKRVVECLTVPGELWIVILTRPVKGAPAQPDGSVRT 159 (631) T ss_pred eEeeeeccCCCCCccccccCCchhHHHHHHHHhcCCCcchHHHHHHHHHhheecccceEEEEEeccCcCCCCCccccccc Confidence 888653311 11 112233444577778899999999999999999998864 232221 Q ss_pred eeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEec--CcCcccccccccHHHHHHHHHHHHHHHHHH-- Q lcl|Aclame:pro 123 PSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFK--HIVASNMVQGISPIDVLKNTTDFDNAVRTF-- 198 (409) Q Consensus 123 ~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~--~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~-- 198 (409) ..+.+++....+......+|. .+....|.+.+|-.+.=+-|| ++.|.....--||+.+|...+.--.-+.+. T Consensus 160 ~~~W~~vt~~ei~~~~~g~g~----~v~lp~g~~h~~~~~~D~l~RiW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~ 235 (631) T protein:vir:10 160 RQEWYAVSKEEIKKSNKGSGT----NIVLPTGEEHEFVKGTDIIFRVWIPKPRKASEPDSPVRAVLDSIREIVRTTKTIA 235 (631) T ss_pred ccceeeccHHHHhcccCcccc----eeecCCCCccceecCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHH Confidence 224455555555433333322 222334555555432223334 344556667889999988887644433332 Q ss_pred H---HHhcCCCceeEE---ecC---------------CcCCHHHHHHHHHHHH----HHhc--CCC--c-eeecC-CC-- Q lcl|Aclame:pro 199 N---LTEMQKPDSFML---KYG---------------SNVSTEKRQQVLEDFK----QYYE--ENG--G-ILFQE-PG-- 245 (409) Q Consensus 199 ~---~~~~~~~~~~~~---~~~---------------~~~~~~~~~~~~~~~~----~~~~--~~~--~-~~vl~-~g-- 245 (409) + .+..++|.-++- ..+ .-......+.+.+.+- ..+. ++. - ++++. .+ T Consensus 236 aaakSRl~gnGvlflP~els~P~~~~~~~~~~g~~v~~~~g~pa~~~l~~~l~q~a~tai~De~S~aA~vPii~~~p~E~ 315 (631) T protein:vir:10 236 NASKSRLIGNGVLFVPHEMSLPAAQGPVSEVEGEEIAPLVGEPAVQQLTDMLFQVAETAVEDEDSQAAFIPVIAGVPGEQ 315 (631) T ss_pred HHHHHHHhhCceeEeccccccCCCCCCCCCcCCccCCccccchhHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHH Confidence 1 122333321110 000 0022334555554443 2332 222 1 23332 11 Q ss_pred -ceeeeccC-ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 246 -VEIEPLPK-KYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLT 322 (409) Q Consensus 246 -~~~~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~ 322 (409) -+++-+.. +..+---+.+++-.+.++|..+.|||..|-+. .++|--+.=+-...-++.-|.|.+.-|+++|++.+|. T Consensus 316 i~~i~hlkf~~ei~e~aiktR~daI~RlA~glDi~pE~LLGlGsd~NHWsAWqI~dedVrlHI~P~l~lic~AlT~q~Lr 395 (631) T protein:vir:10 316 IKDVKHIRFDNEITEVAIKTRNDAIARLAMGLDVSPERLLGLGSQTNHWSAWQISDEDVQLHIAPVMEIFCQALTDQILR 395 (631) T ss_pred hcCeeEEeecCchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHH Confidence 12333333 23334457889999999999999999877554 3444222222223345567899999999999999886 Q ss_pred hh-----hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC------------------E Q lcl|Aclame:pro 323 KT-----DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD------------------K 379 (409) Q Consensus 323 ~~-----~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd------------------~ 379 (409) +. .....|.+-||.+.|... .. +.+.+..+.+.|.+|-...|+.+|+...++-| . T Consensus 396 p~Le~eGvDp~kYvvW~DaS~Lt~d-Pd-r~deA~qa~drGAIt~eAlrk~lGf~eDd~yd~~t~e~~~~~a~~av~~dp 473 (631) T protein:vir:10 396 VTLAREGIDPSKYVVWYDPSQLTID-PD-KSDEAKFAYENGAINGEALRKYLGLGDDAGYDFTTREGWVMWAQDAVSKDP 473 (631) T ss_pred HHHHHhCCCHHHhEeeecCcccccC-CC-CcHHHHHHHHcCCcCHHHHHHHhcCchhcccCcCchHHHHHHHHHHhhccc Confidence 53 223445678898887532 22 22333458899999999999999997643322 1 Q ss_pred Eeecccccchh-----c--ccccccccCCCCCCCCCC Q lcl|Aclame:pro 380 PLISGDLYPID-----T--PLELRKSLKGGDKNVNES 409 (409) Q Consensus 380 ~~~~~n~~~~~-----~--~~~~~~~~~gg~~n~~~~ 409 (409) -++ .++.|+- . .+.++....+|+.+.++. T Consensus 474 aLi-p~lApl~~~~~~~v~~P~~~a~~~~g~ed~~~~ 509 (631) T protein:vir:10 474 TLI-PMLAPLIAGVLKQIEFPQQQAIDSGGNEDTSDA 509 (631) T ss_pred Ccc-hhhHHHHHHHhhhccCCCCCCCCCCCCCccccc Confidence 111 2222211 0 111112222333333322 No 143 >protein:vir:98444 Length: 434 # NCBI annotation: hypothetical protein # Family: family:all:5096 # MgeID: mge:1589 # MgeName: VWB # Cross-refs: genbank:acc:NP_958276;genbank:gi:41057250;genbank:GeneID:2732828 Probab=98.96 E-value=4.9e-09 Score=66.15 Aligned_cols=362 Identities=10% Similarity=0.033 Sum_probs=165.1 Q ss_pred cccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHH Q lcl|Aclame:pro 18 WIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDF 97 (409) Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f 97 (409) ++++.+.. .+.... + -....+...+|+.+++-+--..|.+- +......+..++. + | ..... T Consensus 1 ~l~~~~~~----------~~~~~~-~-~~v~n~~~~ivd~~~~~l~~~gf~~~--d~~~~~~~~~i~~-~-N---~~d~~ 61 (434) T protein:vir:98 1 MLPKNAEQ----------AFLDFQ-R-KARTNFCGLIANASVHRLLALGVTGP--DGEPDTRASRWWQ-A-N---RLDSR 61 (434) T ss_pred CCCCCccH----------HHHHhh-h-hhhccchHHHHHHHHhhhccCceecC--CCchHHHHHHHHH-h-c---ChhHH Confidence 11111111 010000 0 01123455677766665543344421 1112222333322 2 2 33456 Q ss_pred HHHHHHHHHhcCCeEEEeeecCCCc------eeEEEeeCCcceEEEEcCCccee----EEEEEcCCCeEE---------- Q lcl|Aclame:pro 98 INQIETIRNEKGNAYVLIERDIYHQ------PSKLFLLNPDVVEMLIENQSREL----YYSIHAATGNKL---------- 157 (409) Q Consensus 98 ~~~~~~~~l~~G~a~~~~~~~~~G~------~~~l~~l~p~~v~~~~~~~~~~~----~~~~~~~~g~~~---------- 157 (409) ...+..+++.+|.+|..+.++..+. ...+.+++|..+.+.+|+..... .|+.....+... T Consensus 62 ~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~I~~~~p~~~~~i~D~~~~~~~~ai~~~~~~~~~~~~~~~~~~~~~~ 141 (434) T protein:vir:98 62 QKLVWRMAMAQSAGYMLVGAHPTRTEDNGRPSPLITMEHPSECIVEYDPETGEPLVGLKVWHNDIDGFGYARVFFDDTSF 141 (434) T ss_pred HHHHHHHHhhcCceEEEEecCCCcccccCCceeEEEEeccceeEEEEeCCCCceEEEEEEEEeccCCceEEEEEEeCcEE Confidence 6678889999999999988766543 12477888988887776542211 111111111100 Q ss_pred -------------------------------EEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHH---HHHhc Q lcl|Aclame:pro 158 -------------------------------IVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF---NLTEM 203 (409) Q Consensus 158 -------------------------------~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~---~~~~~ 203 (409) .+..=-|+||.+....+. .|.|-++.+...++....+.-. ...++ T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~N~~~~~~-~g~sd~e~vi~liDa~~~~~s~~~~~~~~~ 220 (434) T protein:vir:98 142 PYRTRERTGARLPWGPDSWVYTGTADSGDVHDLGGMQLVEFARMPDLGE-DPEPEFAGVLDIQDRVNLGILNRMAASRFS 220 (434) T ss_pred EEEEeeccccccccccccceecccccccccCCCCccceEEeccCCCcCc-CCcchhhhHHHHHHHHHHHHHHHHHHHHHh Confidence 011122455555432222 5888887777766654433222 22233 Q ss_pred CCCceeEEecCCcCCHH--HHHHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChh Q lcl|Aclame:pro 204 QKPDSFMLKYGSNVSTE--KRQQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSI 280 (409) Q Consensus 204 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~ 280 (409) ..+-..+. +..+.+. +.......++......+++.+++ ++.++.++..+.- -.+.+..+....+|++.-++|+. T Consensus 221 a~p~~~i~--G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~ 297 (434) T protein:vir:98 221 GFRQKWIK--GHKFAKRTDPATGMTVVDQPFVPSPSAVWASEGENTQFGQLDATDL-SGFLKEHASDVRDMLTISQTPTY 297 (434) T ss_pred cchhhhhc--CCCcccccccccccchhhhhhhccccccccCCCCCceEEEecCcch-HHHHHHHHHHHHHHhcccCCCHH Confidence 33322221 1111111 11111122222223344566665 4677877665432 33778888889999999999999 Q ss_pred hcCCcccCccccHHHHHHHHHHHHHHHHHH----HHHHHHHHhh---cC-hhhccccceEEecchhhhhhhHHHHHHHHH Q lcl|Aclame:pro 281 FLNARSNTNFAKNEELNRFYLQHTLLPIVK----QYEEEFNRKL---LT-KTDREKNRYFKFNVKSYLRADSATQAEVYF 352 (409) Q Consensus 281 ~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~----~ie~~ln~~l---l~-~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~ 352 (409) .+++. . +.++.+.. .+....+.-.+. .+...|.+.+ +. .........+++.+......+..+.++++. T Consensus 298 ~~~~~-~-~n~Sg~Al--~~~~~~l~~k~~~k~~~f~~~l~~~~rl~~~~~g~~~~~~~~~v~w~~~~~~s~~~~ada~~ 373 (434) T protein:vir:98 298 LYATD-L-VNISADTI--GALDILHVAKVREHIASFSEGLESVLALAAAQAGVPEDYTEAEVRWANPAHVTMAVKADAAT 373 (434) T ss_pred Hhccc-c-CChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhheeeeEEecCCCCCCHHHHHHHHH Confidence 99753 1 11222221 122222222222 2222222111 00 000112234556666777888999999999 Q ss_pred HHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccch----hcccccccccCCCC---CCCCCC Q lcl|Aclame:pro 353 KAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPI----DTPLELRKSLKGGD---KNVNES 409 (409) Q Consensus 353 ~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~----~~~~~~~~~~~gg~---~n~~~~ 409 (409) +++..|+ +..-+++++|+++-+ -+.+..-..-..+ ..+...+ ...|.+ ++.-|| T Consensus 374 kl~~~g~-~~e~~~~~lg~~~~e-~~r~~~e~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~dg 434 (434) T protein:vir:98 374 KLKSIGY-PLDVIAEELDESPAR-VRRIVAGAASQALLAASLLPAPGA-PSAGNVPDSGGAVDG 434 (434) T ss_pred HHHhcCC-cHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHhhhccCCC-CCCCCCCcccCCCCC Confidence 9998886 777788888887632 0000000000000 0000001 111212 222222 No 144 >protein:vir:99916 Length: 504 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655520;genbank:gi:109392290;genbank:GeneID:4157085 Probab=98.96 E-value=2e-09 Score=68.23 Aligned_cols=396 Identities=9% Similarity=-0.004 Sum_probs=162.8 Q ss_pred Ccc------hhhhhhhhhh---h--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAK------ENIVTRIKKK---L--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~------~~~~~r~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |-. ..++.++... . ...+...... .-..+...+.. ..+......+..-+|+.+|+.+.--.|.+ T Consensus 18 l~~~e~~~i~~L~~~~~~~~~r~~~l~~YY~G~~~-i~~~~~~~p~~----~~~~~~v~n~~~~iVd~~a~rl~~~Gf~~ 92 (504) T protein:vir:99 18 LNDDVVDKVNGLYQQLVDRTPRNLLRASFYDGKYA-IRQIGNLIPPE----YLRTATVLGWSAKAVDTLARRCNLESFVW 92 (504) T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc-chhccccccHH----HHHHhhccCcHHHHHHHHHhhhccceeeC Confidence 111 1111111111 0 0011100000 00000000000 01111122334456666665443333432 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCcee-EEEeeCCcceEEEEcCCccee--- Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPS-KLFLLNPDVVEMLIENQSREL--- 145 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~-~l~~l~p~~v~~~~~~~~~~~--- 145 (409) - +++.....+... ... |. .......+..+.+.+|.+|+.+..+..|.+. .+.+++|..+.+.+|+..... T Consensus 93 ~-d~~~~~~~l~~i-~~~-N~---ld~~~~~~~~~a~iyG~af~~v~~~~d~~~~~~I~~~sP~~~~~iyD~~~~~~~~a 166 (504) T protein:vir:99 93 P-DGDYGSIGGPDV-WDE-NF---FATKANNAMVSSLIHGPAFLINTEGGAGEPDSLIHVKSAMQATGEWNSRRNAMDSL 166 (504) T ss_pred C-CCChhhHHHHHH-HHh-cC---hhhHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceeEEEEeCCCCceeEE Confidence 1 111111223222 222 22 3445667888999999999999988888764 577889998887776543221 Q ss_pred -EEEEEcCCCeEE---EEccce------------------------EEEecCcCcccccccccHHH-HHHHHHHHHH--- Q lcl|Aclame:pro 146 -YYSIHAATGNKL---IVHNMD------------------------MLHFKHIVASNMVQGISPID-VLKNTTDFDN--- 193 (409) Q Consensus 146 -~~~~~~~~g~~~---~~~~~~------------------------vih~~~~~~~~~~~G~sp~~-~~~~~i~~~~--- 193 (409) .+.....+|... .+.++. |++|.+.......+|.|-+. .+...++... T Consensus 167 ~~~~~~d~~g~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~gvPvV~~~n~~~~~~~~G~sei~~~v~~l~Da~~~~~ 246 (504) T protein:vir:99 167 LSITSRDAEGHPTGIALYEDGVTVTADMDDDGDWHADVRTHKLGVPVEVLPYKPREDRPLGSSRITRPVMSLQQRALKGC 246 (504) T ss_pred EEEEEecCCCeEEEEEEEcCCcEEEEEEcCCceeeeccccCCCCcceEEecccccCccccCcccchhhHHHHHHHHHHHH Confidence 111122333221 123333 33443332234456766432 2233222222 Q ss_pred HHHHHHHHhcCCCceeEEecC-CcCCH---HHHHHHHHHHHHHh--cCCCceee-cCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 194 AVRTFNLTEMQKPDSFMLKYG-SNVST---EKRQQVLEDFKQYY--EENGGILF-QEPGVEIEPLPKKYVSEDIVASENL 266 (409) Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~--~~~~~~~v-l~~g~~~~~l~~~~~d~~~~e~~~~ 266 (409) .-......++..+-..++-.. ....+ +....++....... .......+ -..+.++.++....-+ .+++..+. T Consensus 247 ~~~~~~~e~~a~p~r~i~G~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~q~~~~~l~-~~~~~l~~ 325 (504) T protein:vir:99 247 IRMDGHADVYSFPQLILLGADAKNFRNKDGSMKPAWQIALARVFALPDDEDEPDAARARADVKQFPASSPQ-PHIEMLEQ 325 (504) T ss_pred HHHHHHHHHhcchhhhhccCCccccccccccccchhhhhhhhhhcCCCccccccccCccceeeecCCCChH-HHHHHHHH Confidence 111222333333332222111 01111 11122222222211 11111111 1234556555443222 47889999 Q ss_pred HHHHHHHHhcCChhhcCCcccCccccHHHH---HHHHHHHHHHHHHHHHHHHHHHh--hc----Chh--hccccceEEec Q lcl|Aclame:pro 267 TRERVANVFQLPSIFLNARSNTNFAKNEEL---NRFYLQHTLLPIVKQYEEEFNRK--LL----TKT--DREKNRYFKFN 335 (409) Q Consensus 267 ~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~---~~~~~~~~l~P~~~~ie~~ln~~--ll----~~~--~~~~~~~~~~d 335 (409) ...+|++.-++|++.||....++.++.+.. ...+... +.-..+.+.+.|.+- |. ... .......+++. T Consensus 326 ~i~~~a~~t~~P~~~lG~~~~~n~sSa~Ai~~~~~~L~~k-a~~k~~~f~~~l~~~~rla~~~~~~~~~~~~~~~~~~v~ 404 (504) T protein:vir:99 326 IAMMFSGETSIPVESLGFSNRANPTSADAYIASREDLIAE-AEGATDDWSPAFRRSMIRALAIKNGLDRIPPEWKTIDSK 404 (504) T ss_pred HHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccceeE Confidence 999999999999999986543333333332 2222221 122233333333321 11 000 01222345556 Q ss_pred chhhhhhhHHHHHHHHHHHHhcCCcC---HHHHHHHhCCCCCCC---CCEEeecccccchhcccccccccCCCCCCC--- Q lcl|Aclame:pro 336 VKSYLRADSATQAEVYFKAVRSGYYT---INDIREWEDLPPVEG---GDKPLISGDLYPIDTPLELRKSLKGGDKNV--- 406 (409) Q Consensus 336 ~~~l~~~d~~~~~~~~~~~~~~g~~T---~NE~R~~~g~~p~~~---gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~--- 406 (409) +......+..+.++++.+++.+|... ..-+++++|+.+-+= -+.-.-......++.+...+...+++..++ T Consensus 405 w~d~~~~s~a~~aDa~~Kl~~ag~~l~~~~~~l~~~lg~~~~ei~r~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 484 (504) T protein:vir:99 405 FRSPLYLSKAAQADAGAKMLGAGPEWLKETEVGLELLGLTPQQAKRALAERRRASSVSIIEALNRRQQEAATAGEDQDQG 484 (504) T ss_pred ecCCCccCHHHHHHHHHHHHhhccccccchHHHHhhcCCCHHHHHHHHHHHHHHhhHHHHHHHhcccCCCCCCCCCCCcC Confidence 66777888999999999999988632 234556778765320 000000000000111111000011111111 Q ss_pred -----------------CCC Q lcl|Aclame:pro 407 -----------------NES 409 (409) Q Consensus 407 -----------------~~~ 409 (409) ++| T Consensus 485 ~~e~a~~~~~~~~~~p~~~~ 504 (504) T protein:vir:99 485 AGEPPANEPPAALGRPTLVG 504 (504) T ss_pred CCCCCCCCCCccCCCcccCC Confidence 111 No 145 >protein:vir:5961 Length: 503 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:125 # MgeName: SPP1 # Cross-refs: genbank:acc:NP_690661;genbank:geneid:6329220;genbank:gi:22855055;interpro:IPR006428;uniprot:P54309;genbank:GeneID:955279 Probab=98.91 E-value=1.5e-08 Score=63.47 Aligned_cols=382 Identities=10% Similarity=0.094 Sum_probs=166.4 Q ss_pred Ccc-----h--hhhhhhhhhhhcccccCcc-----ccccc-ccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAK-----E--NIVTRIKKKLIDNWIDQSA-----SKLYD-FSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~-----~--~~~~r~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |+. . ..+.+.... +.+... ..... .......... .+.-..++....+|+..+.-+-.-|+ T Consensus 33 ~i~~~i~~~~~~~~~~~~~Y----Y~g~~~i~~~~~~~~~~~~~~~~~~~~---~~~ri~~n~~~~ivd~~~~yl~g~~~ 105 (503) T protein:vir:59 33 MIQKLIDEHNPEPLLKGVRY----YMCENDIEKKRRTYYDAAGQQLVDDTK---TNNRTSHAWHKLFVDQKTQYLVGEPV 105 (503) T ss_pred HHHHHHHhhcHHHHHHHHHH----hccccchhhccchhccccccccccccc---ccceeecchHHHHHHHHHhhhhcCCe Confidence 110 0 001111111 111110 00000 0000000000 01112245566788888888877787 Q ss_pred eEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--ccee Q lcl|Aclame:pro 68 KMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SREL 145 (409) Q Consensus 68 ~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~ 145 (409) .+..+++.....+ ..+.. | ........+..+++.+|.+|+.+..+.+|++ .+..++|..+.+..++. +... T Consensus 106 ~~~~~d~~~~~~l-~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~~~~~ 178 (503) T protein:vir:59 106 TFTSDNKTLLEYV-NELAD--D---DFDDILNETVKNMSNKGIEYWHPFVDEEGEF-DYVIFPAEEMIVVYKDNTRRDIL 178 (503) T ss_pred eeccCcHHHHHHH-HHHHh--c---CHHHHHHHHHHHHhhCCeEEEEEeecCCCce-EEEEEccceeEEEEeCCCCCceE Confidence 7644333222222 22221 2 3566677788899999999999999888875 58889998888877653 2221 Q ss_pred ----EEEEEcCCCeEE----EEccceEEEecCcC------------------------------c----ccccccccHHH Q lcl|Aclame:pro 146 ----YYSIHAATGNKL----IVHNMDMLHFKHIV------------------------------A----SNMVQGISPID 183 (409) Q Consensus 146 ----~~~~~~~~g~~~----~~~~~~vih~~~~~------------------------------~----~~~~~G~sp~~ 183 (409) +|......+..+ .+.+..+.++.... | .+...|.|-++ T Consensus 179 ~~ir~~~~~~~~~~~~~~~evy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~~~nn~~~~sd~~ 258 (503) T protein:vir:59 179 FALRYYSYKGIMGEETQKAELYTDTHVYYYEKIDGVYQMDYSYGENNPRPHMTKGGQAIGWGRVPIIPFKNNEEMVSDLK 258 (503) T ss_pred EEEEEEEEecCCCceEEEEEEEeCCcEEEEEEcCCcccccccccccccccceeecceeccCCccceEEecCCCCCCcchh Confidence 222222222211 23344443332100 0 11234777666 Q ss_pred HHHHHHHHHHHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHH Q lcl|Aclame:pro 184 VLKNTTDFDNAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDI 260 (409) Q Consensus 184 ~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~ 260 (409) .+...++....+. ......++.+ ..+++ +... +........+. ..+++.++++.+...+........+ T Consensus 259 ~~~~liDa~d~~~s~~~~~~~~~~~~-~~v~~-g~~~--~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~ 329 (503) T protein:vir:59 259 FYKDLIDNYDSITSSTMDSFSDFQQI-VYVLK-NYDG--ENPKEFTANLR-----YHSVIKVSGDGGVDTLRAEIPVDSA 329 (503) T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCC-eeEee-cCCc--cccchhhhhhh-----cccceeccCCCcceeEeccCCHHHH Confidence 6666655433222 2223333333 22222 2111 11111111111 2345555555554444444444445 Q ss_pred HHHHHHHHHHHHHHhcCCh---hhcCCcccCccccHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhcc Q lcl|Aclame:pro 261 VASENLTRERVANVFQLPS---IFLNARSNTNFAKNE----------ELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDRE 327 (409) Q Consensus 261 ~e~~~~~~~~Ia~~fgvp~---~~l~~~~~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~ 327 (409) ....+...+.|+..-++|. ..+++.. ++...+ +.....+...+.-+++.+...++..-... .. T Consensus 330 ~~~~~~l~~~i~~~s~~p~~~~~~~~~~~--Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~--~~ 405 (503) T protein:vir:59 330 AKELERIQDELYKSAQAVDNSPETIGGGA--TGPALENLYALLDLKANMAERKIRAGLRLFFWFFAEYLRNTGKGD--FN 405 (503) T ss_pred HHHHHHHHHHHHHHhcccCCCcccccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--cc Confidence 5556666666666666553 2222211 111111 11222333333334443333333221111 11 Q ss_pred ccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC--CEEe--------ecccc-cchhcccc-- Q lcl|Aclame:pro 328 KNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG--DKPL--------ISGDL-YPIDTPLE-- 394 (409) Q Consensus 328 ~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g--d~~~--------~~~n~-~~~~~~~~-- 394 (409) ....+.+.+..-...|..+.++.+.+++.+|+++...+.++++.-+-+.. ..+. ...+. .+-..... T Consensus 406 ~~~~i~i~f~~~~p~d~~~~~~~~~kl~~~GiiS~et~l~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~ 485 (503) T protein:vir:59 406 PDKELTMTFTRTRIQNDSEIVQSLVQGVTGGIMSKETAVARNPFVQDPEEELARIEEEMNQYAEMQGNLLDDEGGDDDLE 485 (503) T ss_pred cccceeEEeCCCCCCCHHHHHHHHHHHHhCCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhccccCccCCCCCCC Confidence 12235666667778899999999999999999999889888765332111 1000 00000 00000000 Q ss_pred cccccCCCCCCCCCC Q lcl|Aclame:pro 395 LRKSLKGGDKNVNES 409 (409) Q Consensus 395 ~~~~~~gg~~n~~~~ 409 (409) ......+.+.+++.| T Consensus 486 ~~~~~~~~~~~~~~g 500 (503) T protein:vir:59 486 EDDPNAGAAESGGAG 500 (503) T ss_pred cCCCCCCcccCCCCC Confidence 000011111122222 No 146 >protein:vir:97900 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1482 # MgeName: Orion # Cross-refs: genbank:acc:YP_655104;genbank:gi:109391854;genbank:GeneID:4157263 Probab=98.89 E-value=6.1e-10 Score=71.11 Aligned_cols=402 Identities=13% Similarity=0.056 Sum_probs=202.4 Q ss_pred Ccchhh--hhhhhhhhh----------cccccCcccccccccccCCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAKENI--VTRIKKKLI----------DNWIDQSASKLYDFSPWKNKSFWGV-INNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~~~~--~~r~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |.-..+ ..|-|..-. ...+..+....-.+...+....+.. .=+.|-..+.++-.+..++++++++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:97 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 777543 333332210 0011100000000111111111110 112345568889999999999999998 Q ss_pred eEeecccc-------c---c----chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee-ecCCC------ceeEE Q lcl|Aclame:pro 68 KMYEDYKV-------V---N----TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYH------QPSKL 126 (409) Q Consensus 68 ~~~~~~~~-------~---~----~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~-~~~~G------~~~~l 126 (409) ..-+-+.. + + +.+......-...-+...++++.+..++-+-|++|+.++ +...+ .+.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:97 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 87653311 1 0 112222333344556778899999999999999997654 33332 13333 Q ss_pred Eee-CCcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEec--CcCcccccccccHHHHHHHHHHHHHHHHHHH---- Q lcl|Aclame:pro 127 FLL-NPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFK--HIVASNMVQGISPIDVLKNTTDFDNAVRTFN---- 199 (409) Q Consensus 127 ~~l-~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~--~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~---- 199 (409) |.+ ....+. ....+. ..+..++|...+|..+.=+.+| ++.|.....--||+.++...+.--.-+.+.. T Consensus 161 W~vvs~~Ei~--~~~~~~---~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaa 235 (639) T protein:vir:97 161 WYAVTREEIK--SKAGET---AEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAA 235 (639) T ss_pred eeeeeHHHhc--ccCCCe---eEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHH Confidence 332 222222 111111 1244556666666554434444 3445555678899999888775444333221 Q ss_pred -HHhcCCCceeEE---ecC--C-----------------cCCHHHHHHHHHHHH----HHhc--CCC--c-eeecCC--- Q lcl|Aclame:pro 200 -LTEMQKPDSFML---KYG--S-----------------NVSTEKRQQVLEDFK----QYYE--ENG--G-ILFQEP--- 244 (409) Q Consensus 200 -~~~~~~~~~~~~---~~~--~-----------------~~~~~~~~~~~~~~~----~~~~--~~~--~-~~vl~~--- 244 (409) .+..+||.-++- ..+ . ..+....+.+...|- ..+. ++. - ++++.. T Consensus 236 kSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E 315 (639) T protein:vir:97 236 KSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAE 315 (639) T ss_pred HHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechH Confidence 122333321110 000 0 001122334444433 3332 222 1 233321 Q ss_pred -CceeeeccCC-hhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 245 -GVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLT 322 (409) Q Consensus 245 -g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~ 322 (409) .-+++.+... ..+---+.+++-.+.++|+.+.|||..|-+..++|--+.=+-...-++.-|.|.+.-|+++|++.+|. T Consensus 316 ~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lr 395 (639) T protein:vir:97 316 HLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILT 395 (639) T ss_pred HhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHHH Confidence 1235555553 33444578899999999999999998876555554322222233345667899999999999999886 Q ss_pred hh-----hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC-------------EEeecc Q lcl|Aclame:pro 323 KT-----DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD-------------KPLISG 384 (409) Q Consensus 323 ~~-----~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd-------------~~~~~~ 384 (409) +. .....|.+-||.+.|... .. +.+.+..+.+.|.+|-.-.|+.+|+...++=| .+..+. T Consensus 396 p~Le~eGvDp~kYvvW~DaS~Lt~d-Pd-~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P 473 (639) T protein:vir:97 396 PLLAREGIDPTKYILWYDASGLTSD-PD-LSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNP 473 (639) T ss_pred HHHHHhCCCHHHhEeeecCcccccC-CC-CcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCc Confidence 53 223445678998887532 22 22334458899999999999999997653322 111111 Q ss_pred ccc----c--------hhcccccccccCCCCC---CCCCC Q lcl|Aclame:pro 385 DLY----P--------IDTPLELRKSLKGGDK---NVNES 409 (409) Q Consensus 385 n~~----~--------~~~~~~~~~~~~gg~~---n~~~~ 409 (409) +++ | ++-+.......+++++ +++++ T Consensus 474 ~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~g 513 (639) T protein:vir:97 474 ELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSG 513 (639) T ss_pred chhhhhhhccCccceecccCCCCCCCCCCCCCCCcccccC Confidence 111 1 1111011111111111 11111 No 147 >protein:vir:107517 Length: 639 # NCBI annotation: gp8 # Family: family:all:2798 # MgeID: mge:1481 # MgeName: PG1 # Cross-refs: genbank:acc:NP_943786;genbank:gi:38638411;genbank:GeneID:2657197 Probab=98.89 E-value=6.1e-10 Score=71.11 Aligned_cols=402 Identities=13% Similarity=0.056 Sum_probs=202.4 Q ss_pred Ccchhh--hhhhhhhhh----------cccccCcccccccccccCCCCcccc-chhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAKENI--VTRIKKKLI----------DNWIDQSASKLYDFSPWKNKSFWGV-INNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~~~~--~~r~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |.-..+ ..|-|..-. ...+..+....-.+...+....+.. .=+.|-..+.++-.+..++++++++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~rr~~ltaAsq~~~~p~~~~kt~~~~~ar~~WQ~eAW~~~d~v~Elry~vgW~~~s~sr~rL 80 (639) T protein:vir:10 1 MAATSLRVVRRPKGSAPAARRRSLTAASQLITDPQKQMKTSLMGTARNEWQSEAWDFSESIGELSYYVSWRANSCSRTTL 80 (639) T ss_pred CCccceeeeecCCCCCcchhhHHHhhhhhccCCcccchhhhccccchhhhhhhhhhhhhhhhhHHHHhhhhhhhhceeee Confidence 777543 333332210 0011100000000111111111110 112345568889999999999999998 Q ss_pred eEeecccc-------c---c----chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee-ecCCC------ceeEE Q lcl|Aclame:pro 68 KMYEDYKV-------V---N----TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE-RDIYH------QPSKL 126 (409) Q Consensus 68 ~~~~~~~~-------~---~----~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~-~~~~G------~~~~l 126 (409) ..-+-+.. + + +.+......-...-+...++++.+..++-+-|++|+.++ +...+ .+.+- T Consensus 81 ~as~idpDtg~PtG~V~~E~d~~~~~v~~~v~~iagG~lGqa~llkr~~~~ltV~GE~wi~~l~r~~k~~~~~~~~~~~~ 160 (639) T protein:vir:10 81 IPSAIDPDTGLPTGEVDIEEDPDAQTVADYVKGIADGPLGQAALIKRAVECMTVVGEVWIAVLIRQEKDPVTGLAAPRAR 160 (639) T ss_pred EeeeeccccCCCCCccccccccCcchHHHHHHhhcCccchHHHHHHHHHhheecccceEEEEEEecCccccCcccccccc Confidence 87653311 1 0 112222333344556778899999999999999997654 33332 13333 Q ss_pred Eee-CCcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEec--CcCcccccccccHHHHHHHHHHHHHHHHHHH---- Q lcl|Aclame:pro 127 FLL-NPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFK--HIVASNMVQGISPIDVLKNTTDFDNAVRTFN---- 199 (409) Q Consensus 127 ~~l-~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~--~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~---- 199 (409) |.+ ....+. ....+. ..+..++|...+|..+.=+.+| ++.|.....--||+.++...+.--.-+.+.. T Consensus 161 W~vvs~~Ei~--~~~~~~---~~i~lPdG~~he~~~~~d~l~RvW~P~prr~~e~dSpvra~l~~l~Ei~~~t~~i~aaa 235 (639) T protein:vir:10 161 WYAVTREEIK--SKAGET---AEISLPDGKTHEFNRDLDSLVRIWNPRPRKASQATSPVRACLETLREIERTTRKIKNAA 235 (639) T ss_pred eeeeeHHHhc--ccCCCe---eEeecCCCCCccccCCCceEEEEeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHH Confidence 332 222222 111111 1244556666666554434444 3445555678899999888775444333221 Q ss_pred -HHhcCCCceeEE---ecC--C-----------------cCCHHHHHHHHHHHH----HHhc--CCC--c-eeecCC--- Q lcl|Aclame:pro 200 -LTEMQKPDSFML---KYG--S-----------------NVSTEKRQQVLEDFK----QYYE--ENG--G-ILFQEP--- 244 (409) Q Consensus 200 -~~~~~~~~~~~~---~~~--~-----------------~~~~~~~~~~~~~~~----~~~~--~~~--~-~~vl~~--- 244 (409) .+..+||.-++- ..+ . ..+....+.+...|- ..+. ++. - ++++.. T Consensus 236 kSRl~gnGvlfvP~els~p~~~~p~~~~~~~~pg~~v~~~~~~~a~d~l~~~l~qaa~tai~De~S~aA~vPiia~~p~E 315 (639) T protein:vir:10 236 KSRVMNNGVLFVPAEMSLPAAQAPIPAGQAQIPGAPVPEVSGVPASEQLATMIYQASVAAMEDENSQAAYIPLVASVAAE 315 (639) T ss_pred HHHHhhCceeeeccccCCCCccccccccccccCcccccccCCccchHHHHHHHHHHHHhhhcCCCCccceeeeeEeechH Confidence 122333321110 000 0 001122334444433 3332 222 1 233321 Q ss_pred -CceeeeccCC-hhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 245 -GVEIEPLPKK-YVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLT 322 (409) Q Consensus 245 -g~~~~~l~~~-~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~ 322 (409) .-+++.+... ..+---+.+++-.+.++|+.+.|||..|-+..++|--+.=+-...-++.-|.|.+.-|+++|++.+|. T Consensus 316 ~l~~ikhl~f~~ei~e~aiktR~daI~RlA~glDi~pE~LLGl~d~NHWsAWqI~dedvrlHI~P~l~~icdAlT~~~Lr 395 (639) T protein:vir:10 316 HLEKVQHIKFGNEVTEVEIKTRIDAITRLAMGLDVSPERLLGMSKGNHWSAWAIGDEDVQLHIKPVMDLICQAIYNDILT 395 (639) T ss_pred HhcCeeeeeecCchhHHHHhhHHHHHHHHHhccCCchhheeecccccceEEEEecccceeeecchhHHHHHHHHHhhHHH Confidence 1235555553 33444578899999999999999998876555554322222233345667899999999999999886 Q ss_pred hh-----hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC-------------EEeecc Q lcl|Aclame:pro 323 KT-----DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD-------------KPLISG 384 (409) Q Consensus 323 ~~-----~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd-------------~~~~~~ 384 (409) +. .....|.+-||.+.|... .. +.+.+..+.+.|.+|-.-.|+.+|+...++=| .+..+. T Consensus 396 p~Le~eGvDp~kYvvW~DaS~Lt~d-Pd-~~deA~qa~drGAIt~eAlR~~lG~~edd~yd~~t~e~~~~~A~~~V~~~P 473 (639) T protein:vir:10 396 PLLAREGIDPTKYILWYDASGLTSD-PD-LSDEAVEAHDRGAITSAALRRLLNVGEDSGYDLTTLDGCREFAADVVTKNP 473 (639) T ss_pred HHHHHhCCCHHHhEeeecCcccccC-CC-CcHHHHHHHHcCCccHHHHHHHhccccccCCCCCCcHHHHHHHHHHhcCCc Confidence 53 223445678998887532 22 22334458899999999999999997653322 111111 Q ss_pred ccc----c--------hhcccccccccCCCCC---CCCCC Q lcl|Aclame:pro 385 DLY----P--------IDTPLELRKSLKGGDK---NVNES 409 (409) Q Consensus 385 n~~----~--------~~~~~~~~~~~~gg~~---n~~~~ 409 (409) +++ | ++-+.......+++++ +++++ T Consensus 474 ~li~~~apl~~P~lq~~e~ptp~~a~~~a~~~~~~de~~g 513 (639) T protein:vir:10 474 ELIAMYAPLLSSQLAGIEFPQPANAIESTREDEEDDEDSG 513 (639) T ss_pred chhhhhhhccCccceecccCCCCCCCCCCCCCCCcccccC Confidence 111 1 1111011111111111 11111 No 148 >protein:vir:38 Length: 496 # NCBI annotation: putative portal protein # Family: family:all:898 # MgeID: mge:2 # MgeName: A118 # Cross-refs: genbank:acc:NP_463464;swissprot:trembl:q9t1c0;genbank:gi:16798786;uniprot:Q9T1C0;genbank:GeneID:922383 Probab=98.89 E-value=4.9e-09 Score=66.12 Aligned_cols=389 Identities=12% Similarity=0.045 Sum_probs=175.8 Q ss_pred cchhhhhhhhhhhhcccccCccccc----------------ccccc--------cCCCC----ccccchhHHhhhHHHHH Q lcl|Aclame:pro 2 AKENIVTRIKKKLIDNWIDQSASKL----------------YDFSP--------WKNKS----FWGVINNTLETNETIFS 53 (409) Q Consensus 2 ~~~~~~~r~~~~~~~~~~~~~~~~~----------------~~~~~--------~~~~~----~~~v~~~~~~~~~~v~~ 53 (409) =|.+++.++++.+..-......... ..|-. +.... ..... +.......... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~yy~g~~~~~~~~~~~~~~~~~~-~~~~~~n~~k~ 79 (496) T protein:vir:38 1 MINQIIAGVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMWKRLYQGHYAEWHNLNYEHNGNPVN-RRQLSMNLPKV 79 (496) T ss_pred ChhHHHHHHHHHHHHhccchhhHHHHhcCCCcCCHHHHHHHHHHHHHhcCCCchhhcchhccCCCccc-cceeecchHHH Confidence 2334444433322211110000000 00000 00000 00000 11122344456 Q ss_pred HHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcc Q lcl|Aclame:pro 54 AITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDV 133 (409) Q Consensus 54 ~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~ 133 (409) +++..|+-+..-|..+.-+++.....+..++. .-.+..-...++.+.+..|.+|+.+..+.+|.+ .+..++|.. T Consensus 80 i~~~~a~~l~~~p~~i~~~d~~~~e~l~~~~~-----~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~~~~ 153 (496) T protein:vir:38 80 TAKYMSKLLFNEKVKINIDDKAAEEFVLNVLK-----TNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADC 153 (496) T ss_pred HHHHHhhhhhCCcceEeeCChHHHHHHHHHHh-----ccCHHHHHHHHHHHHhhhCcEEEEEEEcCCCcE-EEEEEcccc Confidence 67777777766666654333322222222332 234566677778899999999999998887764 467777877 Q ss_pred eEEEEcCCccee--------------EEE-----------------EEcCC----CeEEEE----------------ccc Q lcl|Aclame:pro 134 VEMLIENQSREL--------------YYS-----------------IHAAT----GNKLIV----------------HNM 162 (409) Q Consensus 134 v~~~~~~~~~~~--------------~~~-----------------~~~~~----g~~~~~----------------~~~ 162 (409) +-+..++.+... ++. +...+ |..+.+ +.- T Consensus 154 ~~P~~~~~~~~~~~~f~~~~~~~~~~y~~le~h~~~~~~~~I~~~~y~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~ 233 (496) T protein:vir:38 154 MYPLSNDSENVDECVIANSFHKNNKYYTLLEWNEWQGDVYTVTTELYQSDDPNELGTKVSLTLLFDDIEPVVPLPDFTRP 233 (496) T ss_pred eEEEEecCCcEEEEEEEEEEEeCCeEEEEEEEEEEeCceEEEEEEEEecCCccccCccccccccccccccceeecCCCcc Confidence 776554444331 000 00000 111110 001 Q ss_pred eEEEecCcC----cccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEec------CCcCCHHHHHHHHHHHHHH Q lcl|Aclame:pro 163 DMLHFKHIV----ASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKY------GSNVSTEKRQQVLEDFKQY 232 (409) Q Consensus 163 ~vih~~~~~----~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 232 (409) -+.|++.+- ......|+|.++-+...+.....+.......+..+...++.. .....-+.. ..|.. T Consensus 234 ~f~~~~~~~~N~~~~~~p~G~Sd~~~~~~lid~ld~~~s~~~~~~~~~~~~i~v~~~~l~~~~~~~g~~~----~~~~~- 308 (496) T protein:vir:38 234 TFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTT----QYFDS- 308 (496) T ss_pred eEEEecCCcccccccCCcCCCchHhhHHHHHHHHHHHHHHHHHHHhhcccceecchHHhhccCCCCCccc----cCCCC- Confidence 123444321 224457999999888887665544333323232221111111 100000000 00000 Q ss_pred hcCCCc--eee---cCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH--HHH------- Q lcl|Aclame:pro 233 YEENGG--ILF---QEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE--LNR------- 298 (409) Q Consensus 233 ~~~~~~--~~v---l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~--~~~------- 298 (409) +... ... .+++..++.++.....-++.+..+...++|+...|+|+..++...++..+..|- ... T Consensus 309 --~~~~~~~~~~~~~~~~~~i~~~~~~i~~e~~~~~l~~~l~~i~~~~g~~~~~f~~~~~g~~tAtei~~~~~~l~~~~~ 386 (496) T protein:vir:38 309 --TDEAFFLYQGDQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKN 386 (496) T ss_pred --ccceEEEeecCCCcccccceeeccccCHHHHHHHHHHHHHHHHHhhCCChhhcCCCccccchHHHHHHHHHHHHHHHH Confidence 0000 011 122334666666666677888888889999999999999998765553322221 111 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh-CCCCC Q lcl|Aclame:pro 299 ---FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE-DLPPV 374 (409) Q Consensus 299 ---~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~-g~~p~ 374 (409) ..++.+|..+++.+.+..+..............+.+.++.-...|..+.++.+.+++.+|+++.-.++... |.+. T Consensus 387 ~~~~~~~~~l~~l~~~il~~~~~~~~~~g~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~~~~GiiS~et~l~~~~~~~d- 465 (496) T protein:vir:38 387 SHSQLIEQGIKEMIVSILEVGKFIEAYSGEVVELDTITVDFDDSIAQDEDTTINRYTNAKNQGMIPLKIALQRAWNITE- 465 (496) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCh- Confidence 11222333333333322221111111122344566777777777889999999999999999988887644 4432 Q ss_pred CCCCEEeecccccchhcccccccccCCCCCCCCC Q lcl|Aclame:pro 375 EGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 375 ~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~ 408 (409) +..++.+-... -+...+......++-.+++| T Consensus 466 ~ea~~el~ri~---~E~~~~~~~~d~~~~~~~~e 496 (496) T protein:vir:38 466 AEADEWAEMLA---KEKQAEMPNNDMNGIFGEEE 496 (496) T ss_pred HHHHHHHHHHH---HhhhccCccccccCCCCCCC Confidence 11111110000 00000000001111122222 No 149 >protein:vir:2427 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046829;genbank:gi:9630397;genbank:GeneID:1261620 Probab=98.85 E-value=5.8e-09 Score=65.74 Aligned_cols=389 Identities=13% Similarity=0.048 Sum_probs=164.9 Q ss_pred Ccchhhhhhhhhhh-----hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKL-----IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) Q Consensus 1 M~~~~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 75 (409) |....++.....+. ...+...... .-.......... .+....+.+...+|+..+.-+.-.+|.+- +++. T Consensus 16 ~~~~~L~~~~~~~~~r~~~~~~YY~G~~~-i~~~~~~~~~~~----~~~~~~~n~~~~ivd~~~~~l~~~g~~~~-~~~~ 89 (485) T protein:vir:24 16 IARDEMVSAFEDQNQNLRSNTSYYEAERR-PEAIGVTVPVQM----QSLLAHVGYPRLYVDSIAERQAVEGFRLG-DADE 89 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCc-hhhcCcccchhh----hhhhhccchHHHHHHHHhhhhccCceecC-CCch Confidence 33322222221111 0111111100 000000001110 11112233445566666655544455532 1122 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCce-------eEEEeeCCcceEEEEcCCcceeE-- Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP-------SKLFLLNPDVVEMLIENQSRELY-- 146 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~-------~~l~~l~p~~v~~~~~~~~~~~~-- 146 (409) ....+...+.. | ........+..+++.+|.||+++.++..+.+ ..+.+++|..+.+.+++...... T Consensus 90 ~~~~l~~i~~~--N---~~d~~~~~~~~~a~i~G~ay~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~i~D~~~~~~~~~ 164 (485) T protein:vir:24 90 ADEELWQWWQA--N---NLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNVPLIRVEPPTRMYAEIDPRIGRPAKA 164 (485) T ss_pred hHHHHHHHHHh--c---ChhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCcceEEEeccceeEEEeeCCcCceeEE Confidence 22223333321 2 3456778888999999999999988766432 25778888888777765422111 Q ss_pred E--EEEcCCCeE---EEEccc-------------------------eEEEecCcCcccccccccHHH-HHHHHHH---HH Q lcl|Aclame:pro 147 Y--SIHAATGNK---LIVHNM-------------------------DMLHFKHIVASNMVQGISPID-VLKNTTD---FD 192 (409) Q Consensus 147 ~--~~~~~~g~~---~~~~~~-------------------------~vih~~~~~~~~~~~G~sp~~-~~~~~i~---~~ 192 (409) + .+....+.. ..+..+ -|+||++.....+.+|.|-+. .+...++ .. T Consensus 165 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~~G~s~i~~~v~~liDa~~~~ 244 (485) T protein:vir:24 165 IRVAYDAEGNEIQAATLYTPNETFGWFRAEGEWVEWFSDPHGLGAVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARI 244 (485) T ss_pred EEEEEeecCCeEEEEEEEcCCcEEEEEecCCceEeecccccCCCcccEEEeccCcccCCcCCcccchhhHHHHHHHHHHH Confidence 1 111111100 112222 345555444445567777654 2333333 22 Q ss_pred HHHHHHHHHhcCCCceeEEecCCcCCHHH--HHHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 193 NAVRTFNLTEMQKPDSFMLKYGSNVSTEK--RQQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDIVASENLTRE 269 (409) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~ 269 (409) .+-.......+..+-..+. +....... -+.-...|+. ..+++..++ ++.++.++..+.-+ .+++..+.... T Consensus 245 ~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i~ 318 (485) T protein:vir:24 245 LMLMQATAELMGVPQRLIF--GIKPEEIGVDPETGQTLFDA---YLARILAFEDAEGKIQQFSAAELA-NFTNALDQIAK 318 (485) T ss_pred HHHHHHHHHhhcchhhhhc--cCCccccccccccccchhhh---cccceeccCCCCceEEeecccchH-HHHHHHHHHHH Confidence 2211222333333322221 11111100 0001111221 234555554 56778776654333 37777888888 Q ss_pred HHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hcChh-hccccceEEecchh Q lcl|Aclame:pro 270 RVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRK----------LLTKT-DREKNRYFKFNVKS 338 (409) Q Consensus 270 ~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~----------ll~~~-~~~~~~~~~~d~~~ 338 (409) +++..=++|+..+++... |.++.++. .+....+.-.+...+..+..- +.... .......+++.+.. T Consensus 319 ~~s~~~~~p~~~fg~~~~-n~~Sg~Al--~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~~~~~~d~~~i~v~f~~ 395 (485) T protein:vir:24 319 QVAAYTGLPPQYLSTAAD-NPASAEAI--RAAESRLIKKVERKNAIFGGAWEEAMRLAYRLMKGGDVPPDMLRMETVWRD 395 (485) T ss_pred HHhcccCCCHHHhccccC-cchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccceeeEEecC Confidence 888888999999975432 11222221 111112222222222211111 11100 01112345555666 Q ss_pred hhhhhHHHHHHHHHHHHhcC--CcCHHHHHHHhCCCCCC--CCCEEe---ecccccchhcccc----cccc-cCCCCC-- Q lcl|Aclame:pro 339 YLRADSATQAEVYFKAVRSG--YYTINDIREWEDLPPVE--GGDKPL---ISGDLYPIDTPLE----LRKS-LKGGDK-- 404 (409) Q Consensus 339 l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~--~gd~~~---~~~n~~~~~~~~~----~~~~-~~gg~~-- 404 (409) -...+..+.++.+.+++.+| +++..-+++.+|+.+.+ ...... .......++.... .+.+ ..+++. T Consensus 396 ~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~l~~~~d~~~e~~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 475 (485) T protein:vir:24 396 PSTPTYAAKADAATKLYGNGQGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPNPTPAPKP 475 (485) T ss_pred CCCCCHHHHHHHHHHHHhcccccCCHHHHHhhCCCCHhHHHHHHHHHHHHhhhhhhHHHhhcccCCCCCCCCCCCCCCCC Confidence 66778888999999998876 67777788888886532 111000 0000000010000 0000 001111 Q ss_pred ----CCCCC Q lcl|Aclame:pro 405 ----NVNES 409 (409) Q Consensus 405 ----n~~~~ 409 (409) ++.++ T Consensus 476 ~~~~~~~~~ 484 (485) T protein:vir:24 476 QPAIEGGDS 484 (485) T ss_pred ccCCCCCCC Confidence 11222 No 150 >protein:vir:8654 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:156 # MgeName: Rosebush # Cross-refs: genbank:acc:NP_817773;genbank:gi:29566205;genbank:GeneID:1259465 Probab=98.85 E-value=5.3e-10 Score=71.44 Aligned_cols=400 Identities=15% Similarity=0.111 Sum_probs=202.4 Q ss_pred Ccchhh--hhhhhhhhhc---ccccCccccccccccc-------CCCCccccch-hHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAKENI--VTRIKKKLID---NWIDQSASKLYDFSPW-------KNKSFWGVIN-NTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~~~~--~~r~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~v~~-~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |.-..+ ..|-|..-.. ..+-..+-...+.+.- +..+.+..-. +-|-..+.++-.+..|+++++++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:86 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQEDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhccccccchhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 887654 3333332110 0000000001011111 1111111100 1233478888899999999999998 Q ss_pred eEeecccc-------ccc------hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc------ee-EEE Q lcl|Aclame:pro 68 KMYEDYKV-------VNT------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ------PS-KLF 127 (409) Q Consensus 68 ~~~~~~~~-------~~~------~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~------~~-~l~ 127 (409) ..-+-+.. .++ ........--...+...++++.+..++-+-|++|+.+.....|. ++ +.+ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:86 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 88653311 111 11222333344456778999999999999999999887433332 22 233 Q ss_pred eeCCcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEecC--cCcccccccccHHHHHHHHHHHHHHHHHH--H---H Q lcl|Aclame:pro 128 LLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKH--IVASNMVQGISPIDVLKNTTDFDNAVRTF--N---L 200 (409) Q Consensus 128 ~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~--~~~~~~~~G~sp~~~~~~~i~~~~~~~~~--~---~ 200 (409) .+-++.++- .. ++ ..+..+.|.+..|....=+.+|- +.|.....--||+.++...+.--.-+.+. + . T Consensus 161 ~vt~~ei~~--~~-~~---~~i~lP~g~~~e~~~~~d~l~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaakS 234 (629) T protein:vir:86 161 ALTPEEVRA--SE-KK---TIIELPTGDKHEFRDGLDGMFRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASKS 234 (629) T ss_pred eechHHhhh--cc-Cc---eeeEcCCCCcceeeCCCceEEEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHHH Confidence 333333331 11 11 23445556666554443333553 44555567889999988887544433322 1 2 Q ss_pred HhcCCCceeEE---ec------------CCc----CCHHHHHHHHHHHH----HHhcC--CC--c-eeecC-CC---cee Q lcl|Aclame:pro 201 TEMQKPDSFML---KY------------GSN----VSTEKRQQVLEDFK----QYYEE--NG--G-ILFQE-PG---VEI 248 (409) Q Consensus 201 ~~~~~~~~~~~---~~------------~~~----~~~~~~~~~~~~~~----~~~~~--~~--~-~~vl~-~g---~~~ 248 (409) +..++|.-++- .. +.. ......+.+.+.|- ..+.. +. - ++++. .+ -++ T Consensus 235 RL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~i 314 (629) T protein:vir:86 235 RLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKNV 314 (629) T ss_pred HHhhCceeeeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcCe Confidence 23344322211 00 000 11124444555444 33332 22 1 23331 11 123 Q ss_pred eeccC-ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChh-- Q lcl|Aclame:pro 249 EPLPK-KYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT-- 324 (409) Q Consensus 249 ~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~-- 324 (409) +-+.. +..+---+.+++-.+.++|..+.|||..|-+. .++|--+.=+-...-++.-|.|.+..|+++|++.+|.+. T Consensus 315 ~hlkf~~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~Le 394 (629) T protein:vir:86 315 THLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVLM 394 (629) T ss_pred eEEeecCchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchHHHHHHHHHHhhHHHHHHH Confidence 33333 23334457889999999999999999877554 354422222222334556789999999999999988653 Q ss_pred ---hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC-------------EEeecccc-- Q lcl|Aclame:pro 325 ---DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD-------------KPLISGDL-- 386 (409) Q Consensus 325 ---~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd-------------~~~~~~n~-- 386 (409) .....|.+-||.+.|... .. +.+.+..+.+.|.+|-...|+.+|+....+-| .+-...++ T Consensus 395 ~eGiDp~kYvvW~DaS~Lt~d-Pd-~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li~ 472 (629) T protein:vir:86 395 REGIDPNAYVVWHDASQLTVD-PD-KTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLLP 472 (629) T ss_pred HhCCCHHHhEeeecCcccccC-CC-CcHHHHHHHHcCCcCHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchhh Confidence 223445678898887532 22 22334458899999999999999997643322 11111111 Q ss_pred -------------cchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 387 -------------YPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 387 -------------~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) .|+..+.- ....+.+.+++.++ T Consensus 473 ~~a~l~~~~a~~~~P~~~~~~-pp~~e~~~~dE~sg 507 (629) T protein:vir:86 473 TLAVLIPELADVEFPTPTVAL-PPAEEQDGDEEASG 507 (629) T ss_pred hhhhhhhhhcccccCccCCCC-CccccCCCcccccC Confidence 11111000 00111111111111 No 151 >protein:vir:99088 Length: 629 # NCBI annotation: gp12 # Family: family:all:2798 # MgeID: mge:1608 # MgeName: Qyrzula # Cross-refs: genbank:acc:YP_655692;genbank:gi:109521770;genbank:GeneID:4157810 Probab=98.83 E-value=8.4e-10 Score=70.35 Aligned_cols=399 Identities=16% Similarity=0.130 Sum_probs=201.4 Q ss_pred Ccchhh--hhhhhhhhhc---ccccCcccccccccc-------cCCCCccccch-hHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAKENI--VTRIKKKLID---NWIDQSASKLYDFSP-------WKNKSFWGVIN-NTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~~~~--~~r~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~v~~-~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |.-..+ ..|-|.+-.. ..+-..+-...+.+. .+..+.+..-. +-|-..+.++-.+..|+++++++.+ T Consensus 1 ma~~~lr~~rrpk~~p~~~r~~al~aas~~i~~p~~~~~ks~~~~~~~~WQ~eAW~~~d~v~Elry~vgW~~~s~Sr~rL 80 (629) T protein:vir:99 1 MAPTSLRIVRRPKSEPVSTRQRALVAASQPVENPGKAFRKAMGSSTRTDWQDDAWKAYDAVGELRYYVGWRSSSASRVRL 80 (629) T ss_pred CCccceeeeecCCCCChhhhhhhhhhhhhcccccchhhhhhcCCCchhhhhHHHHHHHHhhhhHHHHhhhhhhhhceeee Confidence 887654 3333332110 000000000101111 11111111100 1233478888899999999999998 Q ss_pred eEeecccc-------ccc------hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc------ee-EEE Q lcl|Aclame:pro 68 KMYEDYKV-------VNT------EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ------PS-KLF 127 (409) Q Consensus 68 ~~~~~~~~-------~~~------~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~------~~-~l~ 127 (409) ..-+-+.. .++ ........--...+...++++.+..++-+-|++|+.+.....|. ++ +.+ T Consensus 81 ~as~idpDtg~ptg~i~e~~~~~~~v~~~v~~i~gG~lgqa~lLkr~~~~ltV~GE~wiv~~~~~~~~~d~~~~~~~eW~ 160 (629) T protein:vir:99 81 IASAIDPDTGLPTGSIDEDDRVGARVQQIVNQIAGGALGQAQLIKRVVEQLTVAGETWVAILFTDKSRLDSNGNPVPEWL 160 (629) T ss_pred EeeeecCCCCCCccccCCCchhHHHHHHHHHhhcCChhhHHHHHHHHHhheecccceEEEEeecCCCccCCCCcchhhhe Confidence 88653311 111 11222333344456778999999999999999999887433332 22 233 Q ss_pred eeCCcceEEEEcCCcceeEEEEEcCCCeEEEEcc-ceEEEecC--cCcccccccccHHHHHHHHHHHHHHHHHH--H--- Q lcl|Aclame:pro 128 LLNPDVVEMLIENQSRELYYSIHAATGNKLIVHN-MDMLHFKH--IVASNMVQGISPIDVLKNTTDFDNAVRTF--N--- 199 (409) Q Consensus 128 ~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~vih~~~--~~~~~~~~G~sp~~~~~~~i~~~~~~~~~--~--- 199 (409) .+-++.++- .. ++ ..+..+.|.+..|.. .+++ +|- +.|.....--||+.++...+.--.-+.+. + T Consensus 161 ~vt~~ei~~--~~-~~---~~i~lP~g~~~e~~~~~d~l-~RiW~P~Prr~~e~DSpvra~l~~l~Ei~~lt~~i~aaak 233 (629) T protein:vir:99 161 ALTPEEVRA--SE-KK---TIIELPTGDKHEFRDGLDGM-FRVWNPRARRAREPDSPVRANLDSLKEIVRTTKTIANASK 233 (629) T ss_pred eechHHhhh--cc-Cc---eeEEcCCCCccceeCCCceE-EEeeCCCcccccCCcchhHHHHHHHHHHHHhhhHHHHHHH Confidence 343433331 11 11 234445555555543 3433 553 44555567889999988887544433322 1 Q ss_pred HHhcCCCceeEE---ec------------CCc----CCHHHHHHHHHHHH----HHhcC--CC--c-eeecC-CC---ce Q lcl|Aclame:pro 200 LTEMQKPDSFML---KY------------GSN----VSTEKRQQVLEDFK----QYYEE--NG--G-ILFQE-PG---VE 247 (409) Q Consensus 200 ~~~~~~~~~~~~---~~------------~~~----~~~~~~~~~~~~~~----~~~~~--~~--~-~~vl~-~g---~~ 247 (409) .+..++|.-++- .. +.. ......+.+.+.|- ..+.. +. - ++++. .+ -+ T Consensus 234 SRL~gnGvlflP~e~slP~~~~p~~~n~pg~~~p~~~~~pa~~~l~~~l~q~a~tAi~De~S~aA~vPiia~~P~E~i~~ 313 (629) T protein:vir:99 234 SRLIGNGVVFVPHEMSLPSMNAPVASNKPGAPAPPILGTPAVQQLQELLFQVAQTAYDDEDSMAALIPMFAAAPGELIKN 313 (629) T ss_pred HHHhhCceeEeccCcccCccCCCCCCCCCCcccccccccchHHHHHHHHHHHHhhhhcCCCCccceeeeeEeechHHhcC Confidence 223334322211 00 000 11124444555444 33332 22 1 23331 11 12 Q ss_pred eeeccC-ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChh- Q lcl|Aclame:pro 248 IEPLPK-KYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT- 324 (409) Q Consensus 248 ~~~l~~-~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~- 324 (409) ++-+.. +..+---+.+++-.+.++|..+.|||..|-+. .++|--+.=+-...-++.-|.|.+..|+++|++.+|.+. T Consensus 314 i~hlkf~~ei~e~aiktR~daI~RlA~glDippE~LLGlGsd~NHWsAWqI~dedvrlHI~P~l~~ic~AlT~~~Lrp~L 393 (629) T protein:vir:99 314 VTHLKFDNQVTEVAIKTRNDAIARLAMGLDVSPERLLGLGSNSNHWSAWQIGDEDVRLHILPPVEMLCEAITNQVLRTVL 393 (629) T ss_pred eeEEeecCchhHHHHhhHHHHHHHHHhccCCchhhheeccCCccceEEEEecccceeeecchhHHHHHHHHHhhHHHHHH Confidence 333333 23334457889999999999999999877554 354422222222334556789999999999999988653 Q ss_pred ----hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC-------------EEeecccc- Q lcl|Aclame:pro 325 ----DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD-------------KPLISGDL- 386 (409) Q Consensus 325 ----~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd-------------~~~~~~n~- 386 (409) .....|.+-||.+.|... .. +.+.+..+.+.|.+|-...|+.+|+....+-| .+-...++ T Consensus 394 e~eGiDp~kYvvW~DaS~Lt~d-Pd-~~deA~~a~drGAIt~eAlrk~lGf~eD~~yd~tt~E~~~~~a~d~V~~~P~Li 471 (629) T protein:vir:99 394 MREGIDPNAYVVWHDASQLTVD-PD-KTDEARDAFDRGAITAEAMVKMLGLADDTVYDFTTPEGWAQWARDRVGQDPNLL 471 (629) T ss_pred HHhCCCHHHhEeeecCcccccC-CC-CcHHHHHHHHcCCccHHHHHHHhcCccccccCCCchHHHHHHHHHhhhhCcchh Confidence 223445678898887532 22 22334458899999999999999997633322 11111111 Q ss_pred --------------cchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 387 --------------YPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 387 --------------~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) .|+..+.- ....+.+.+++.++ T Consensus 472 ~~~a~l~~~~a~~~~P~~~~~~-pp~~e~~~~dE~sg 507 (629) T protein:vir:99 472 PTLAVLIPELADVEFPTPTVAL-PPAEEQDGDEEASG 507 (629) T ss_pred hhhhhhhhhhcccccCccCCCC-CccccCCCcccccC Confidence 11111000 00111111111111 No 152 >protein:vir:80959 Length: 499 # NCBI annotation: gp3 # Family: family:all:898 # MgeID: mge:1886 # MgeName: A500 # Cross-refs: genbank:acc:YP_001468389;genbank:gi:157324963;genbank:GeneID:5601394 Probab=98.82 E-value=1.9e-08 Score=62.98 Aligned_cols=392 Identities=13% Similarity=0.031 Sum_probs=177.7 Q ss_pred cchhhhhhhhhhhhcccccCccccc----------------cccccc-CCC-------C----ccccchhHHhhhHHHHH Q lcl|Aclame:pro 2 AKENIVTRIKKKLIDNWIDQSASKL----------------YDFSPW-KNK-------S----FWGVINNTLETNETIFS 53 (409) Q Consensus 2 ~~~~~~~r~~~~~~~~~~~~~~~~~----------------~~~~~~-~~~-------~----~~~v~~~~~~~~~~v~~ 53 (409) =|.|++.++++.+..-....+.... ..|-.+ .+. . .... .+.......... T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~-~~~~~s~n~~~~ 79 (499) T protein:vir:80 1 MINQIIAGVKGVMRRMGLLKSLKDVTDHKKVNANDEDYKYIDMWKRLYQGNYAEWHNLNYEHNGNPV-NRRQLSMNLPKV 79 (499) T ss_pred ChhHHHHHHHHHHHHhccccchhhhhcCCCCcCCHHHHHHHHHHHHHhcCCcchhhccccccCCCcc-ccceeecchHHH Confidence 2344555544433211100000000 000000 000 0 0000 011223344455 Q ss_pred HHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcc Q lcl|Aclame:pro 54 AITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDV 133 (409) Q Consensus 54 ~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~ 133 (409) .++..|+-+..=|..+.-+++.....+..++. .......+..++...+..|.+|+.+..+.+|.+ .+..++|.. T Consensus 80 iv~~~a~~l~~ep~~i~~~d~~~~e~l~~~~~-----~n~f~~~~~~~~~~a~~~G~~~~~~~~D~~~~~-~i~~v~a~~ 153 (499) T protein:vir:80 80 TAKYMSKLLFNEKVKINIDDETAEEFVLNVLK-----TNGFTKNMERYIEYGEAMGGFVIKVYHDGNKNV-KVSFATADC 153 (499) T ss_pred HHHHHHHhhhCCcceEeeCCHHHHHHHHHHHh-----hccHHHHHHHHHHHHhhcCcEEEEEEECCCCcE-EEEEEcCCc Confidence 66777777666565554333322222222222 223455566677788899999999998888764 467778877 Q ss_pred eEEEEcCCcceeE-----------------------------EEEE-----cC----CCeEEEE---------------- Q lcl|Aclame:pro 134 VEMLIENQSRELY-----------------------------YSIH-----AA----TGNKLIV---------------- 159 (409) Q Consensus 134 v~~~~~~~~~~~~-----------------------------~~~~-----~~----~g~~~~~---------------- 159 (409) +-+...+.+.+.. |.+. .. .|..+.+ T Consensus 154 ~~Pi~~d~~~~~~~~f~~~~~~~~~~y~~lE~h~~~~~~~~~y~I~n~~~~~~~~~~lG~~v~l~~~~~~~~~~~~~~~~ 233 (499) T protein:vir:80 154 MYPLSNDSENVDECLIANSFHKNNKYYKLLEWNEWKGEKEEVYTVTTELYQSDDPNELGGKVSLKLLFNDIEPVVPLPSL 233 (499) T ss_pred eEEEEecCCCeEEEEEEEEEeecCeEEEEEEEEEecccceeeEEEEEEEEeccCccccCcccchhhhccCcCCceeecCC Confidence 7765444343210 0000 00 0111110 Q ss_pred ccceEEEecCcCc----ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEe------cCCcCCHHHHHHHHHHH Q lcl|Aclame:pro 160 HNMDMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLK------YGSNVSTEKRQQVLEDF 229 (409) Q Consensus 160 ~~~~vih~~~~~~----~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 229 (409) ..--++|++.+-+ ...+.|+|.++-+...+.............+..+...+.. .....+-+.. ..| T Consensus 234 ~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~~~~~~g~~~----~~~ 309 (499) T protein:vir:80 234 TRPTFIYIKPNIANNKNLTSPLGISVYANALDTLKTLDLMFDSYYQEFKLGKKKVLVPSSFVKTAVNLDGSTT----QYF 309 (499) T ss_pred CccceEeecCCccccccCCCccCCchHhhHHHHHHHHHHHHHHHHHHHHhcccceecchhhhhccCCCCCCcc----cCC Confidence 0011345544321 2345699999988888765554433333333222222211 1111100000 001 Q ss_pred HHHhcCCCceeec--CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH-HHHHHHHHHH Q lcl|Aclame:pro 230 KQYYEENGGILFQ--EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-NRFYLQHTLL 306 (409) Q Consensus 230 ~~~~~~~~~~~vl--~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-~~~~~~~~l~ 306 (409) .....--..+... +++-.++.++....+-++.+..+...++|....|+++..++...++..+..|-. ...-...++. T Consensus 310 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~fg~~~~g~~TAtei~s~~~~l~~~~~ 389 (499) T protein:vir:80 310 DSTDEAFFLYQGEQDDNGKAIKDISVEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKN 389 (499) T ss_pred CcccceeeEeeccCCCCcCceeEecCcCChHHHHHHHHHHHHHHHHhcCCChhhcCCCcccchhHHHHHHHHHHHHHHHH Confidence 0000000001111 122346777776666778888888899999999999999987665543222211 1111111222 Q ss_pred HHHHHHHHHHHHh-----------hcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh-CCCCC Q lcl|Aclame:pro 307 PIVKQYEEEFNRK-----------LLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE-DLPPV 374 (409) Q Consensus 307 P~~~~ie~~ln~~-----------ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~-g~~p~ 374 (409) ...+.++..|... .+..........+.++++.-...|..+.++...+++.+|+|+.-.++... |.+. T Consensus 390 ~~~~~~~~~l~~l~~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~~~~Gi~S~et~l~~~~~~~d- 468 (499) T protein:vir:80 390 SHSQLIEQGIKEMIVSILEVGKLIKAYDGDTVELDTITVDFDDSIAQDEDTTINRYTTAKNQGMIPLKIALQRAWNITE- 468 (499) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHhhcCCCCh- Confidence 2333333333221 11111122345677777787788889999999999999999999887654 5432 Q ss_pred CCCCEEeecccccchhcccccccccCCCCCCCCC Q lcl|Aclame:pro 375 EGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 375 ~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~ 408 (409) +..++.+.... .+...+......+|-.+++| T Consensus 469 ~ea~~el~~i~---~E~~~~~~~~d~~g~~ge~e 499 (499) T protein:vir:80 469 AEADEWAEMLA---KEKQAEIPNNDMTGIFGEEE 499 (499) T ss_pred HHHHHHHHHHH---HHhhcCCCCCCccccCCCCC Confidence 11111110000 00000001111223333333 No 153 >protein:vir:104082 Length: 485 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:1656 # MgeName: Che12 # Cross-refs: genbank:acc:YP_655593;genbank:gi:109392464;genbank:GeneID:4156950 Probab=98.81 E-value=7.5e-09 Score=65.11 Aligned_cols=389 Identities=11% Similarity=0.046 Sum_probs=165.4 Q ss_pred Ccchhhhhhhhh---hh--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc Q lcl|Aclame:pro 1 MAKENIVTRIKK---KL--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) Q Consensus 1 M~~~~~~~r~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 75 (409) +....+...+.. +. ...+...... .-......+... .+......+...+|+.++.-+--.+|.+- +++. T Consensus 16 ~~~~~l~~~~~~~~~r~~~~~~Yy~G~~~-i~~~~~~~~~~~----~~~~~~~n~~~~ivd~~~~~l~~~g~~~~-~~~~ 89 (485) T protein:vir:10 16 IARDEMVSAFEDSTQNLKTNTSYYEAERR-PEAIGVTVPIQM----QSLLAHVGYPRLYVDSIAERQAVEGFRFG-DADE 89 (485) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhcCCCCChhh----hhhhhhcCcHHHHHHHHHhhhcccceecC-CCch Confidence 112111111111 10 1111111110 000000001010 11111223445666666665533344321 1112 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc-------eeEEEeeCCcceEEEEcCCccee--E Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ-------PSKLFLLNPDVVEMLIENQSREL--Y 146 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~-------~~~l~~l~p~~v~~~~~~~~~~~--~ 146 (409) ....+..++. + -....+...+..+++.+|.||+.+.++..+. ...+.+++|..+.+.+|+..... . T Consensus 90 ~~~~~~~i~~-~----N~~d~~~~~~~~~a~i~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~~ 164 (485) T protein:vir:10 90 ADEELWQWWQ-A----NNLDIEAPLGYTDAYVHGRSYITISRPDPQIDLGWDPNTPIIRVEPPTRMYAEIDPRIGRVSKA 164 (485) T ss_pred hHHHHHHHHH-h----cCHhHHHHHHHHHHhhcCceEEEEeeCCcccccccCCCeeEEEEEccceeEEEEcCCCCceeEE Confidence 2222333332 1 2345677888899999999999988876542 23577888888887776543211 1 Q ss_pred EE--EEcCCCe---EEEEccc-------------------------eEEEecCcCcccccccccHHH----HHHHHHHHH Q lcl|Aclame:pro 147 YS--IHAATGN---KLIVHNM-------------------------DMLHFKHIVASNMVQGISPID----VLKNTTDFD 192 (409) Q Consensus 147 ~~--~~~~~g~---~~~~~~~-------------------------~vih~~~~~~~~~~~G~sp~~----~~~~~i~~~ 192 (409) +. +....+. ...+.++ -|+||.+.....+.+|.|-++ .+.+.+... T Consensus 165 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~ 244 (485) T protein:vir:10 165 IRVAYDAEGNEIQAATLYTPNDIFGWYRVENEWQEWFNNPHGLGVVPVVPIPNRTRLSDLYGTSEITPELRSMTDAAARI 244 (485) T ss_pred EEEEEeeCCCeEEEEEEEeCCeEEEEEEcCCceEEeccccCCCCcccEEEeccccccCCCCCccchhHHHHHHHHHHHHH Confidence 11 1111111 0112222 334444433334456777544 233333322 Q ss_pred HHHHHHHHHhcCCCceeEEecCCcCCHHHH--HHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 193 NAVRTFNLTEMQKPDSFMLKYGSNVSTEKR--QQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDIVASENLTRE 269 (409) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~ 269 (409) .+-......++..+-..+. +....+... ..-...|+. ..+++..++ ++.++.++..+.-+ .+++..+.... T Consensus 245 ~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~d~k~~q~~~~~~~-~~~~~l~~~i~ 318 (485) T protein:vir:10 245 LMLMQATAELMGVPQRLIF--GIKPEEIGVDPETGQTLFDA---YLARILAFEDAEGKIQQFSAAELA-NFTNALDQIAK 318 (485) T ss_pred HHHHHHHHHhhcchHHHHh--cCCcccccccccccchhhhh---cccceeccCCCCceEEeecccchH-HHHHHHHHHHH Confidence 2221222233333322111 111111000 000111211 234555554 56788776654322 37788888899 Q ss_pred HHHHHhcCChhhcCCcccCccccHHHH---HHHHHHHHHHHHHHHHHHHHHHh------hcC-hhhccccceEEecchhh Q lcl|Aclame:pro 270 RVANVFQLPSIFLNARSNTNFAKNEEL---NRFYLQHTLLPIVKQYEEEFNRK------LLT-KTDREKNRYFKFNVKSY 339 (409) Q Consensus 270 ~Ia~~fgvp~~~l~~~~~~~~~~~e~~---~~~~~~~~l~P~~~~ie~~ln~~------ll~-~~~~~~~~~~~~d~~~l 339 (409) +|+.+=++|+..+++... |.++.++. ...+...+ .-..+.+...|.+. +.. .........+++.+... T Consensus 319 ~~~~~~~~p~~~fg~~~~-n~~Sg~Al~~~~~~l~~k~-~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~~~ 396 (485) T protein:vir:10 319 QVAAYTGLPPQYLSTAAD-NPASAEAIRAAESRLIKKV-ERKNSIFGGAWEEAMRLAYRMMKGGDVPPDMLRMETVWRDP 396 (485) T ss_pred HHhcccCCCHHHhccccC-chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCcccceeeeEEecCC Confidence 999999999999976432 22222221 11111111 11111111122111 110 00111223566666677 Q ss_pred hhhhHHHHHHHHHHHHhcC--CcCHHHHHHHhCCCCCC--CCCEE---------------eecccccchhcccccccccC Q lcl|Aclame:pro 340 LRADSATQAEVYFKAVRSG--YYTINDIREWEDLPPVE--GGDKP---------------LISGDLYPIDTPLELRKSLK 400 (409) Q Consensus 340 ~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~--~gd~~---------------~~~~n~~~~~~~~~~~~~~~ 400 (409) ...+..+.++++.+++.+| +++..-+++.+|+.+-+ ...+. .-+....+ +...+.+.... T Consensus 397 ~~~~~~~~ada~~kl~~ag~~~~s~et~~~~lg~~~~~~~~~~~~~ee~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 475 (485) T protein:vir:10 397 STPTYAAKADAASKLYNGGTGVIPRERARKDMGYSIAEREEMRRWDEEEAAMGLGLIGTMVDPNPTVP-GSPSPAPAPKP 475 (485) T ss_pred CCCCHHHHHHHHHHHHhccccCCCHHHHHHhCCCCHhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCCccccccC Confidence 7888999999999999876 78888889999887532 11100 00110000 00000000001 Q ss_pred CCCCCCCCC Q lcl|Aclame:pro 401 GGDKNVNES 409 (409) Q Consensus 401 gg~~n~~~~ 409 (409) ..+.++.+| T Consensus 476 ~~~~~~~~~ 484 (485) T protein:vir:10 476 AALESGGDA 484 (485) T ss_pred cCCCCCCCC Confidence 111222233 No 154 >protein:vir:78907 Length: 518 # NCBI annotation: gp3 # Family: family:all:4147 # MgeID: mge:1859 # MgeName: A006 # Cross-refs: genbank:acc:YP_001468843;genbank:gi:157325445;genbank:GeneID:5601904 Probab=98.76 E-value=2e-08 Score=62.75 Aligned_cols=390 Identities=8% Similarity=0.032 Sum_probs=172.6 Q ss_pred CcchhhhhhhhhhhhcccccCccc---ccc-cccccCCCC-----------------ccccchhHHhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSAS---KLY-DFSPWKNKS-----------------FWGVINNTLETNETIFSAITKLS 59 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~---~~~-~~~~~~~~~-----------------~~~v~~~~~~~~~~v~~~i~~ia 59 (409) |+. |+++++++..++-+.+.. .+. .+......+ +.....+..+..+.-..+++.+| T Consensus 1 ~~~---~~~~~~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~~~i~~~~A 77 (518) T protein:vir:78 1 MGV---WSVMTRFIKGWLNGKPNGSEPELIPKYLPLVPDNQKEWSKDSYLTSLWAQGYVPTVHDKLMNSGTGNEIVVVAA 77 (518) T ss_pred Ccc---hhhHHHHHHHhhcCCCCccchhccHHHhhhcccchhhhhhhhhhhhhcccCCCCccccccccCChHHHHHHHHH Confidence 765 788888776665544331 111 111100000 00001111223334455677777 Q ss_pred HhhccCce--eEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEE Q lcl|Aclame:pro 60 NSMASLPL--KMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEML 137 (409) Q Consensus 60 ~~ia~lp~--~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~ 137 (409) +-+..=|. .|...+...+..+...|..--.. -.+..-+...+.+.+..|.+++.+..+ +|+ ..+..+++..+-+. T Consensus 78 ~ll~~e~~~i~v~~~~~~d~e~~~~~l~~il~~-n~f~~~~~~~~e~a~a~G~~~~k~~~d-~~~-~~i~~v~ad~~~P~ 154 (518) T protein:vir:78 78 EYISGKPLSIDVTGVNGSKDENLTKQLKEALRI-DNFDSKSVKIVELAGGSGVSAVKINIL-NGR-PSISVHSSSQFWID 154 (518) T ss_pred HhhcCCCceEEecCccccCcHHHHHHHHHHHHh-ccHHHHHHHHHHHhhccCceEEEEEEE-CCe-eEEEEEcCCeeEEE Confidence 77755443 33221111112222222211111 223344455566788888888766655 355 35666777766664 Q ss_pred EcCCcce---------------eEEE-E-------------------------EcCCCeEEEE----------------- Q lcl|Aclame:pro 138 IENQSRE---------------LYYS-I-------------------------HAATGNKLIV----------------- 159 (409) Q Consensus 138 ~~~~~~~---------------~~~~-~-------------------------~~~~g~~~~~----------------- 159 (409) ..+ |.. .+|. . ....+..+.. T Consensus 155 ~~~-g~~~~~~f~~~~~~~~k~~~y~~lE~he~~~~~~~~~~~~~~~I~n~ly~~~~~~~v~~~~~~~~~~l~~~~~~~~ 233 (518) T protein:vir:78 155 FKN-NEPFRFNFFEEIPTSNKADIYYLVESREIKQWDKEGKKLSGGFVTYSVIKIDGDKTTPISAERLPEQITSYLHTND 233 (518) T ss_pred eec-CcEEEEEEEEEeecCCcceeEEEEEeeccccccceeecccceeEEEEEeeecCccccccccccccccccccccccc Confidence 322 210 0110 0 0000100000 Q ss_pred -----------ccceEEEecCcCc----ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHH-HH- Q lcl|Aclame:pro 160 -----------HNMDMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTE-KR- 222 (409) Q Consensus 160 -----------~~~~vih~~~~~~----~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 222 (409) +.--+.|+++..+ .+.+.|+|.+.-+...+...........+.+..+-..+......+... .- T Consensus 234 ~~e~~~~~tg~~~~~~~~~~n~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~ 313 (518) T protein:vir:78 234 IQLNHSVSIGLKSMGAYLINNSPSNTRYPHLNLGESDLSQCTNYLFAVDYFFTVYMREGEKTKTKIAASERMFRKKVNKS 313 (518) T ss_pred CccceeeccCCccceEEeeccccccccccCCCcCcchHhhhhHHHHHHHHHHHHHHHHHHhCCceeeechhHhccCCCCC Confidence 0111234443221 134569999999998887655444333333332222222111111000 00 Q ss_pred -HHHHHHHHHHhcCCCceee----cCCCc----eeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccH Q lcl|Aclame:pro 223 -QQVLEDFKQYYEENGGILF----QEPGV----EIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN 293 (409) Q Consensus 223 -~~~~~~~~~~~~~~~~~~v----l~~g~----~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~ 293 (409) ..-.-.|. .+...... .++|. .++.++....+.++.+..+...++|....|+++..++.. ++..+.. T Consensus 314 ~~~~~~~fd---~~~~~y~~i~~~~~~~~~~~~~i~~~~~~Ir~e~~~~~~~~~l~~~~~~~G~s~~tfg~~-~~~~TAT 389 (518) T protein:vir:78 314 TDKEEWSMN---VDEDYFMQFKGTLDAGAKLNDMIQFMQGDFRDGSYRETMEYFAQKAVSKSGYNPATFNLG-NREVKAT 389 (518) T ss_pred CCccccccC---CCCceEEEecCcCCCCCccccceeeeecccChHHHHHHHHHHHHHHHHhhCCChhhcCcc-cccccHH Confidence 00000000 00000110 12222 266777777788899999999999999999999999753 2222222 Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHhh----------cCh-h--hccccceEEecchhhhhhhHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 294 EEL-NRFYLQHTLLPIVKQYEEEFNRKL----------LTK-T--DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGY 359 (409) Q Consensus 294 e~~-~~~~~~~~l~P~~~~ie~~ln~~l----------l~~-~--~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~ 359 (409) |-. .+.-.-.++.-..+.++.+|...+ ... . .......+.+++++....|.++.++...+++.+|+ T Consensus 390 ei~s~~~~~~~t~~~~~~~~e~al~~l~~~i~~l~~~~~~~~~~~~~~~~~~v~i~f~D~i~~D~~~~~~~~~~~v~aGi 469 (518) T protein:vir:78 390 EIWSLQDATVRKIEKKKRLIQNVYEQMLWDFLYLLTGGTNNKEKAIMRDEIRVIIEFPDPMSVNLNELSSTLNNMNSALA 469 (518) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccCCCceeEEEEeCCCCCCCHHHHHHHHHHHHhcCC Confidence 211 011111122223333333222111 000 0 11123457788888889999999999999999999 Q ss_pred cCHHHHHHHh--CCCCCCCCCEEe--e-ccc-ccchhccccc-ccccCCC Q lcl|Aclame:pro 360 YTINDIREWE--DLPPVEGGDKPL--I-SGD-LYPIDTPLEL-RKSLKGG 402 (409) Q Consensus 360 ~T~NE~R~~~--g~~p~~~gd~~~--~-~~n-~~~~~~~~~~-~~~~~gg 402 (409) |++.++-+++ |+.. +..++-+ + .-+ ..+...+.+. -...+|| T Consensus 470 mS~e~~i~~~~~~~~d-eea~~e~~ri~~E~~~~~~~~p~~~~g~~~~~g 518 (518) T protein:vir:78 470 MSVEEKVKLIHPKWED-EEIQAEVKRIYLENAIGEVPDPEAIGGMETKGG 518 (518) T ss_pred CCHHHHHHHhCCCCCH-HHHHHHHHHHHHHhcccCCCCCccccCCCCCCC Confidence 9999866554 3322 1111100 0 000 0000000000 0123444 No 155 >protein:vir:5839 Length: 533 # NCBI annotation: similar to portal vertex protein of head # Family: family:all:1036 # MgeID: mge:123 # MgeName: RM 378 # Cross-refs: genbank:acc:NP_835625;genbank:gi:30044028 Probab=98.75 E-value=6e-08 Score=60.18 Aligned_cols=400 Identities=14% Similarity=0.164 Sum_probs=191.3 Q ss_pred Ccchhhhhhhhhhh-----hcccc----cCcccccccc-----ccc--C---CCCcccc---------chh-HHhhhHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKL-----IDNWI----DQSASKLYDF-----SPW--K---NKSFWGV---------INN-TLETNETI 51 (409) Q Consensus 1 M~~~~~~~r~~~~~-----~~~~~----~~~~~~~~~~-----~~~--~---~~~~~~v---------~~~-~~~~~~~v 51 (409) |.-.+.|.|.-+.. .+... +......... .+. . ..-+-+. ..+ .++.+|.| T Consensus 1 ~~~~~~w~~~de~~~~~~~~~~~~~~~~p~~~dG~s~i~~~~~~~~~~~~~~~~~~gg~~~n~~eLI~~YR~ma~~~pEV 80 (533) T protein:vir:58 1 MPSLEKYKKLNEAVNFTNFLSPMYGMGAPHGAGGSSMIPINMYHPFATAGYASRFYGGIEFNRFFLYDMYDRMDYTDPLI 80 (533) T ss_pred CCCcchhhhhhHHHHHHHhhchhhcccCccCCCCCccccCCCCcchhhhhhhhhhhccccccHHHHHHHHHHhhccCcch Confidence 76666666643321 11111 1111110000 000 0 0000001 112 23568999 Q ss_pred HHHHHHHHHhhc-----cCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee-cCCCceeE Q lcl|Aclame:pro 52 FSAITKLSNSMA-----SLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER-DIYHQPSK 125 (409) Q Consensus 52 ~~~i~~ia~~ia-----~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~-~~~G~~~~ 125 (409) ..||+.|.+.+. .-|+.+..+...........+.. .+++..--..+++.|.++|+.|..++- +..+.+.+ T Consensus 81 d~AideIvneaiv~d~~~~pV~v~l~~~e~s~~iK~kI~~----lldf~~~~~~~fR~WYVDGriy~Hkiik~~k~GI~e 156 (533) T protein:vir:58 81 STVLDIIADECTIPNENGNIVDVVTKDIELAKAILSYLDY----VINIEKNAYPIIRNMIKYGDMFLHILEKGSDGTIEK 156 (533) T ss_pred hhHHHhhhceeeEecCCCceeEeecccccccHHHHHHHHH----HhcchhhhhHHHHhhhhcceeEEEeccCCcccchhh Confidence 999999998764 33444443332222222222222 222333334556788999999987653 34566889 Q ss_pred EEeeCCcceEEEEcCCcceeEEEEEc------CCCeEEEEccceEEEecCc-CcccccccccHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 126 LFLLNPDVVEMLIENQSRELYYSIHA------ATGNKLIVHNMDMLHFKHI-VASNMVQGISPIDVLKNTTDFDNAVRTF 198 (409) Q Consensus 126 l~~l~p~~v~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~vih~~~~-~~~~~~~G~sp~~~~~~~i~~~~~~~~~ 198 (409) |..|+|..++.+++......+|.+.. ..+..+.++.+.|+|+..- ...+..+++|-+..+...+....-++.. T Consensus 157 lr~lDPr~i~~vr~~~t~~eyyvy~~~~~~~~s~~~~~kI~~daI~y~~SGl~d~~~~~iisyLhkAiKp~NQLkmiEDA 236 (533) T protein:vir:58 157 FQVVSPYIFSKRYNPETDTWYYVITDVYRNVVSGYFNEDIPEEDVIHFSHKIDTNFFPYGRSYLESARAIWNQLRLMEDA 236 (533) T ss_pred heecCCeeeEEEEeeccceEEEeecccccccccCccccccchhheeeeeeccccCCCCceehhhhHHHHHHHHHHHHHHH Confidence 99999999999988766677776652 2233467889999998754 3346677888888886665544444433 Q ss_pred -HHHhcCCCc---eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCce----------eec----------CCCce Q lcl|Aclame:pro 199 -NLTEMQKPD---SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGGI----------LFQ----------EPGVE 247 (409) Q Consensus 199 -~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----------~vl----------~~g~~ 247 (409) ......+.| .+-+.++ .+-+..+++..+.+-..++| .|.+ .++ +.|.+ T Consensus 237 lVIYRisRAPeRRvFYIDVG-Nlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddrk~m~~~sMlEDyWLpRReGgrgTE 315 (533) T protein:vir:58 237 LMLYRVVRSVDRRVFYVDVG-NVPPDKINEYLTNIAMQYKRDYWVRNNQNQFLGIDNYFSIESILKDYFIPRRGDRRAVE 315 (533) T ss_pred HHHHhhcCChhheEEEEeec-CCCccCHHHHHHHHHHhcccceEEeccCCeEeeccchhhhhhhHhhhcccccCCCccce Confidence 233333332 2233333 34343344433333333321 2322 122 23567 Q ss_pred eeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc Q lcl|Aclame:pro 248 IEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFA-KNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR 326 (409) Q Consensus 248 ~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~-~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~ 326 (409) ++.|... . +.-.+-..+..+.+.++++||.+-|+..+....+ .+--....|.+ -|.-+-..+.+.|.++|+..... T Consensus 316 I~TLpGg-~-lgemeDV~YF~kkLy~ALnVP~sRl~~e~~fgr~~eItRDEiKF~K-FI~rLR~rF~~ll~~qLilk~ii 392 (533) T protein:vir:58 316 IDILQGS-K-VDLAEDVEYMLNRLISALKVPKAFIGYEGDVNAKNTLATQDIKFNN-TIKRIQGFFVEELERMVRMNKEF 392 (533) T ss_pred eeecCCC-C-CCcHHHHHHHHHHHHHHhCCCeeecCCCCCCccchhhhHHHHHHHH-HHHHHHHHHHHHHhcccccccCc Confidence 7777643 3 6666777889999999999999999765433222 11112222433 45667777888888888765432 Q ss_pred c-ccceEEecchhhh-----hhhHHHHHHHHHHH--------HhcCC--cCHHHHHH------HhCCCCC---CCCCEEe Q lcl|Aclame:pro 327 E-KNRYFKFNVKSYL-----RADSATQAEVYFKA--------VRSGY--YTINDIRE------WEDLPPV---EGGDKPL 381 (409) Q Consensus 327 ~-~~~~~~~d~~~l~-----~~d~~~~~~~~~~~--------~~~g~--~T~NE~R~------~~g~~p~---~~gd~~~ 381 (409) . ..+.+.|..+.-. ..-+..|+..+..+ +..-+ +| +|+.+ ..+..++ ++-+.=+ T Consensus 393 t~eew~~~f~~Dn~f~ElKe~Eil~~Ri~~l~~~dpyvgk~yi~k~ILr~t-dei~~q~e~ie~E~~~~~~~~~~~~~e~ 471 (533) T protein:vir:58 393 ADQDFRLVMNRSNSIVEGERFAVIEQRIGIAERLKGWVREDWIYSNILQIP-YDLKPQEEVAEAAGGGGLFDTGGFGEET 471 (533) T ss_pred chhheeeeeeccchHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHhcCC-hhhhHHHHHHHHhhcCCCCCCCCccccc Confidence 2 2233444433211 11122222222211 01111 33 23222 1222221 1111111 Q ss_pred ecccc-----cchhcccccc---cccCCCCCCCCC--------------C Q lcl|Aclame:pro 382 ISGDL-----YPIDTPLELR---KSLKGGDKNVNE--------------S 409 (409) Q Consensus 382 ~~~n~-----~~~~~~~~~~---~~~~gg~~n~~~--------------~ 409 (409) .|... .|++.+.... .+.++++..+.+ | T Consensus 472 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g 521 (533) T protein:vir:58 472 TPADFLGERGSPIESPRGRTEFDFGTEGGEELGGELNLGGAFEEFEEETG 521 (533) T ss_pred CCcccCccccCcccCCCChhhHhcccCCcccccccccccccchhhhhhcC Confidence 12211 1332221111 111111111100 1 No 156 >protein:vir:94742 Length: 409 # NCBI annotation: putative portal protein # Family: family:all:524 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996701;genbank:gi:45597416;genbank:GeneID:2767966 Probab=98.73 E-value=7.9e-08 Score=59.52 Aligned_cols=347 Identities=9% Similarity=-0.008 Sum_probs=161.5 Q ss_pred Ccchhhhhhhhhhh-----hcccccCcccccccccccCCCCccccchhHH-hhhHHHHHHHHHHHHhhccCceeEeeccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKL-----IDNWIDQSASKLYDFSPWKNKSFWGVINNTL-ETNETIFSAITKLSNSMASLPLKMYEDYK 74 (409) Q Consensus 1 M~~~~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 74 (409) +.+..+..++.... ...+..... ..-..+...+... ...+ +-..+..-+|+.+|+.+.=-.| +..+ T Consensus 4 ~~i~~L~~~~~~~~~r~~~~~~yY~g~~-~~~~~~~~~p~~~----~~~~~~v~nw~~~iVds~a~rl~~~Gf---~~~d 75 (409) T protein:vir:94 4 KGIGYLRFKLSVHKRRAEMRYDQYAMKY-VDRFKGITIPQAL----SQQYRSILGWCAKGVDSLADRLVFREF---ENDD 75 (409) T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccC-chhhcChhhhHHH----HHHHhhhcchhHHHHHHhHhhcccCcc---cCCc Confidence 22223333221111 111111100 0000000000000 0011 1123445556655553322222 2111 Q ss_pred cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeE--EEEE-- Q lcl|Aclame:pro 75 VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELY--YSIH-- 150 (409) Q Consensus 75 ~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~--~~~~-- 150 (409) ..+...+. . |. .......+..+.+.+|.+|+.+..+.+|.| .+.+++|..+....|+...... |.+. T Consensus 76 ---~~l~~i~~-~-N~---ld~~~~~~~~~aliyG~sf~~v~~~~dg~~-~i~~~sp~~~~~i~D~~~~~~~~a~~~~~~ 146 (409) T protein:vir:94 76 ---FTVNEIFE-E-NN---PDIFFDSAVLSSLIASCSFTYISKGENDAV-RLQVIEAVNATGIIDPITGLLTEGYAVLER 146 (409) T ss_pred ---hHHHHHHH-h-cC---hhHHHHHHHHHHHHhcceeEEEecCCCCce-EEEEeccceEEEEEecCCCceeeeEEEEEe Confidence 22333322 1 22 244556777889999999999999888875 6888999888887776433221 1111 Q ss_pred cCCCeE---EEEccce----------------------EEEecCcCcccccccccHH-HHHH---HHHHHHHHHHHHHHH Q lcl|Aclame:pro 151 AATGNK---LIVHNMD----------------------MLHFKHIVASNMVQGISPI-DVLK---NTTDFDNAVRTFNLT 201 (409) Q Consensus 151 ~~~g~~---~~~~~~~----------------------vih~~~~~~~~~~~G~sp~-~~~~---~~i~~~~~~~~~~~~ 201 (409) ...+.. ..+.++. |++|.+........|.|-+ +.+. +.+.....-...... T Consensus 147 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~g~vPvV~f~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~~~~~e 226 (409) T protein:vir:94 147 DENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGHPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADVTAE 226 (409) T ss_pred cCCCceEEEEEEecCcEEEEEecCceeEeeeCCCCCcceEEeccccccccccCccccchhHHHHHHHHHHHHHHHHHHHH Confidence 111211 1122222 3444443334556787754 2333 333332222233344 Q ss_pred hcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-----CCceeeeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 202 EMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQ 276 (409) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 276 (409) +++.+-..++-.+. +.+..+.++... ++++.++ ++.++.++..+.- ..+++..+....++|+.-+ T Consensus 227 ~~a~pqr~i~G~d~--d~~~~~~~~~~~-------~~i~~~~~d~dg~~~~v~q~~~~~l-~~~~~~l~~~~~~~a~~t~ 296 (409) T protein:vir:94 227 FYSFPQKYVTGLSD--DAEPMETWKATV-------SSMLQFTKDEDGDKPTLGQFTQPSM-SPFTEQLRTAAAGFAGETG 296 (409) T ss_pred HhcChhheeEecCC--CCcccchhhhhH-------HHhhcCCCCCCCCCceEEecCCCCh-hHHHHHHHHHHHHHhhhcC Confidence 55555444443221 112222232222 2344442 3456666544322 2488999999999999999 Q ss_pred CChhhcCCccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHh---hc---Chhh--ccccceEEecchhhhhh---h Q lcl|Aclame:pro 277 LPSIFLNARSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRK---LL---TKTD--REKNRYFKFNVKSYLRA---D 343 (409) Q Consensus 277 vp~~~l~~~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~---ll---~~~~--~~~~~~~~~d~~~l~~~---d 343 (409) +|++.||.... ++......+...+...+ .-..+.+.+.+.+- .+ .... ......+++.+.+.... + T Consensus 297 lP~~~lg~~~~NpsSa~Al~a~~~~L~~~a-~~k~~~fg~~~~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~~~~~~~ 375 (409) T protein:vir:94 297 LTLDDLGFVSDNPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYLAACLRDDAPYLREQFRKTKPKWEPLFEADASM 375 (409) T ss_pred CCHHHhccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCccccccccceEEeccCCCcchHH Confidence 99999987542 11112222222222211 11122222222211 11 1000 11122345455544333 3 Q ss_pred HHHHHHHHHHHHhcC--CcCHHHHHHHhCCCCCC Q lcl|Aclame:pro 344 SATQAEVYFKAVRSG--YYTINDIREWEDLPPVE 375 (409) Q Consensus 344 ~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~ 375 (409) ....++++.|++.+| +...+-+++++|+..-+ T Consensus 376 ~a~~aDa~~Kl~~ag~~~~~~~~~~~~lG~~~~d 409 (409) T protein:vir:94 376 LSLIGDGAIKLNQAIPEFINKDTIRDLTGIEGGE 409 (409) T ss_pred HHHHHHHHHHHHHhcccccchhHHHHHcCCCCCC Confidence 466788899999999 56678999999998755 No 157 >protein:vir:7768 Length: 484 # NCBI annotation: gp14 # Family: family:all:524 # MgeID: mge:149 # MgeName: Bxz2 # Cross-refs: genbank:acc:NP_817602;genbank:gi:29566032;genbank:GeneID:1259226 Probab=98.70 E-value=7.6e-08 Score=59.63 Aligned_cols=387 Identities=12% Similarity=0.040 Sum_probs=165.1 Q ss_pred Ccchhh---hhhhhhh---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc Q lcl|Aclame:pro 1 MAKENI---VTRIKKK---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK 74 (409) Q Consensus 1 M~~~~~---~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~ 74 (409) .....+ +.+...+ +.+-+.+... +-......... ..+......+..-+|+..+..+--..|.+- +++ T Consensus 15 ~~~~~l~~~~~~~~~rl~~l~~Yy~G~~~--i~~~~~~~~~~----~~~~~~~~n~~~~ivd~~~~~l~~~g~~~~-~~~ 87 (484) T protein:vir:77 15 KAREEMLNLFTERTQDLGDNTAYYESERR--PDAVGVTVPQQ----MQKLLAHVGYPRLYIDAIAARQELEGFRLG-GAD 87 (484) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc--chhcccccchh----HHhhhhhcCcHHHHHHHHHhhhccCceecC-Ccc Confidence 000001 1111111 1111111110 00000000000 011112234455566666665543445432 111 Q ss_pred cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCce-------eEEEeeCCcceEEEEcCCcceeE- Q lcl|Aclame:pro 75 VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP-------SKLFLLNPDVVEMLIENQSRELY- 146 (409) Q Consensus 75 ~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~-------~~l~~l~p~~v~~~~~~~~~~~~- 146 (409) .....+..++. . -........+..+++.+|.||..+.++..|.+ ..+.+++|..+.+.+|+...... T Consensus 88 ~~~~~l~~i~~-~----N~~d~~~~~~~~~a~~~G~a~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~D~~~~~~~~ 162 (484) T protein:vir:77 88 KADEQLWDWWQ-A----NDLDIESTLGHTDSLVHGRSYITISKPDPNIDPGVDPEVPIIRVEPPTNLYAQIDPRTRQVMR 162 (484) T ss_pred hhHHHHHHHHH-h----cCHhHHHHHHHHHHhhcCceEEEEecCCCCcccccccccceEEEeccceeEEEecCCCCceEE Confidence 22222333322 1 23456677888899999999999988887753 35778888888877665322110 Q ss_pred ---EEEEcCCCeE---EEEcc-------------------------ceEEEecCcCcccccccccHHH----HHHHHHHH Q lcl|Aclame:pro 147 ---YSIHAATGNK---LIVHN-------------------------MDMLHFKHIVASNMVQGISPID----VLKNTTDF 191 (409) Q Consensus 147 ---~~~~~~~g~~---~~~~~-------------------------~~vih~~~~~~~~~~~G~sp~~----~~~~~i~~ 191 (409) +......+.. ..+.+ =-|++|.+....+...|.|-++ .+.+.+.. T Consensus 163 a~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~N~~~~~~~~G~s~i~~~v~~L~Da~~~ 242 (484) T protein:vir:77 163 AIRAIEDEEGNEVIGATLYLPNNTVIWNREDGQWVQVANVAHNLEMVPVIPIPNRTRLSDLYGTTEITPELRSVTDAAAR 242 (484) T ss_pred EEEEEEeecCCcEEEEEEEecCeEEEEEecCCceEeeccccCCCCCcceEEeccccccCccCCcccchHHHHHHHHHHHH Confidence 0111111110 01111 2345565544445556777554 22333332 Q ss_pred HHHHHHHHHHhcCCCceeEEecCCcCCHHHH--HHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHHHHHHHHHH Q lcl|Aclame:pro 192 DNAVRTFNLTEMQKPDSFMLKYGSNVSTEKR--QQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDIVASENLTR 268 (409) Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~ 268 (409) ..+-......++..+-..++ +....+... ++-...|+. ..+++..++ ++.++.++..+.-+ .+++..+... T Consensus 243 ~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i 316 (484) T protein:vir:77 243 TLMLMQATAELMGVPQRLLF--GVKGEELGVDPETGQTLFDA---YLARILAFEDHESKAQQFSAAELR-NFVDALDALD 316 (484) T ss_pred HHHHHHHHHHhhhhhHHHHh--CCCcchhcccccccchhhhh---hhhhhcccCCCCceeEeecCCChH-HHHHHHHHHH Confidence 22222222333333222221 111111100 111111221 123455555 46788777654333 3778888889 Q ss_pred HHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHH----HHHHHH----Hhh--cCh-hhccccceEEecch Q lcl|Aclame:pro 269 ERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQ----YEEEFN----RKL--LTK-TDREKNRYFKFNVK 337 (409) Q Consensus 269 ~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~----ie~~ln----~~l--l~~-~~~~~~~~~~~d~~ 337 (409) .+|+.+-++|+..+++... |.++.++....+ ..+.-.+.. +...|. ..+ ... ........+++.+. T Consensus 317 ~~~s~~~~~p~~~fg~~~~-n~~Sg~Al~~~~--~~l~~ka~~k~~~f~~~l~~~~~l~~~~~~~~~~~~~~~~i~v~w~ 393 (484) T protein:vir:77 317 RKAAAYTGLPPYYLSFSSE-NPASAEAIRSSE--SRLVKTVERKNKIFGGAWEQAMRVAYKVMNGGDIPPEYYRMESIWR 393 (484) T ss_pred HHHhcccCCCHHHhccccC-cchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccceEEec Confidence 9999999999999976432 222222222111 111111111 111111 100 000 00111234556666 Q ss_pred hhhhhhHHHHHHHHHHHHhcC--CcCHHHHHHHhCCCCCC--CCCEEeeccc---ccchhcccccccccCCCCCCCCC-- Q lcl|Aclame:pro 338 SYLRADSATQAEVYFKAVRSG--YYTINDIREWEDLPPVE--GGDKPLISGD---LYPIDTPLELRKSLKGGDKNVNE-- 408 (409) Q Consensus 338 ~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~--~gd~~~~~~n---~~~~~~~~~~~~~~~gg~~n~~~-- 408 (409) .....+..+.++.+.+++.+| +++..-+++++|+.+-+ ......-... ..-++.... .....+|+++..+ T Consensus 394 ~~~~~s~~~~ad~~~kl~~~g~gi~s~et~~~~l~~~~~~~~e~~~~~~ee~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 472 (484) T protein:vir:77 394 DPSTPTYAAKADAATKLYNNGQGVIPKERARIDMGYSITEREEMRKWDEEEQAQGLGLMGTMFG-TDPSGGGNPDNPETP 472 (484) T ss_pred CCCCCCHHHHHHHHHHHHhccCCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHhhhcc-ccccCCCCCCCCCcc Confidence 667788899999999999876 88888888998885532 1111100000 000000000 0011122222111 Q ss_pred --------C Q lcl|Aclame:pro 409 --------S 409 (409) Q Consensus 409 --------~ 409 (409) + T Consensus 473 ~~~~~~~~~ 481 (484) T protein:vir:77 473 EPQPNPAEE 481 (484) T ss_pred cccCCCccc Confidence 1 No 158 >protein:vir:4223 Length: 486 # NCBI annotation: predicted 53.7Kd protein # Family: family:all:524 # MgeID: mge:89 # MgeName: L5 # Cross-refs: genbank:acc:NP_039678;swissprot:sw:q05220;genbank:gi:9625444;uniprot:Q05220;genbank:GeneID:2942930;interpro:IPR010859 Probab=98.69 E-value=9.2e-08 Score=59.15 Aligned_cols=387 Identities=11% Similarity=0.029 Sum_probs=160.7 Q ss_pred Ccchhhhhhhhhhh-----hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc Q lcl|Aclame:pro 1 MAKENIVTRIKKKL-----IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) Q Consensus 1 M~~~~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 75 (409) .....+...+.... ...+...... .-......... ..+......+..-+|+.++..+--..|.+- +.+. T Consensus 16 ~~~~~l~~~~~~~~~r~~~l~~YY~G~~~-i~~~~~~~~~~----~~~~~~v~n~~~~iVd~~~~~l~~~g~~~~-~~~~ 89 (486) T protein:vir:42 16 VVREEMISAFEDASKDLASNTSYYDAERR-PEAIGVTVPRE----MQQLLAHVGYPRLYVDSVAERQAVEGFRLG-DADE 89 (486) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCc-chhcccccchh----HhhhhhccchHHHHHHHHHhhhcccceecC-CCch Confidence 11111211111110 1111111100 00000000000 001111223555667766665544445432 1222 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc-------eeEEEeeCCcceEEEEcCCccee--E Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ-------PSKLFLLNPDVVEMLIENQSREL--Y 146 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~-------~~~l~~l~p~~v~~~~~~~~~~~--~ 146 (409) ....+..++. . |. .......+..+++.+|.||+.+.++..|. ...+.+++|..+.+.+|+..... . T Consensus 90 ~~~~~~~i~~-~-N~---~d~~~~~~~~~a~~~G~ay~~v~~~e~~~~~~~~~~~~~i~~~~p~~~~~i~d~~~~~~~~~ 164 (486) T protein:vir:42 90 ADEELWQWWQ-A-NN---LDIEAPLGYTDAYVHGRSFITISKPDPQLDLGWDQNVPIIRVEPPTRMHAEIDPRINRVSKA 164 (486) T ss_pred hHHHHHHHHH-h-cC---hhHHHHHHHHHHhhcCceEEEEecCCcccccccCCCeeEEEEecccceEEEEeCCCCCeEEE Confidence 2222333332 2 22 34556678889999999999988766442 23667788888887776432111 0 Q ss_pred E--EEEcCCCeEE---EEccc-------------------------eEEEecCcCcccccccccHHH----HHHHHHHHH Q lcl|Aclame:pro 147 Y--SIHAATGNKL---IVHNM-------------------------DMLHFKHIVASNMVQGISPID----VLKNTTDFD 192 (409) Q Consensus 147 ~--~~~~~~g~~~---~~~~~-------------------------~vih~~~~~~~~~~~G~sp~~----~~~~~i~~~ 192 (409) + .+....+... .+.++ -|++|.+.....+..|.|-++ .+.+.+... T Consensus 165 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~~~n~~~~~~~~G~s~i~~~v~~liDa~~~~ 244 (486) T protein:vir:42 165 IRVAYDKEGNEIQAATLYTPMETIGWFRADGEWAEWFNVPHGLGVVPVVPLPNRTRLSDLYGTSEITPELRSMTDAAARI 244 (486) T ss_pred EEEEEecCCCeEEEEEEEcCCcEEEEEecCCcEEeecceecCCCCceEEEeccccccCCCCCcccchhhHHHHHHHHHHH Confidence 0 1111111100 11222 334444433334456777544 333333333 Q ss_pred HHHHHHHHHhcCCCceeEEecCCcCCHHHH--HHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 193 NAVRTFNLTEMQKPDSFMLKYGSNVSTEKR--QQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDIVASENLTRE 269 (409) Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~~~ 269 (409) .+-.......+..+-..+. +........ ++-...|+. ..+++.+++ ++.+|.++.....+ .+++..+.... T Consensus 245 ~s~~~~~~e~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~~~~e-~~~~~l~~~i~ 318 (486) T protein:vir:42 245 LMLMQATAELMGVPQRLIF--GIKPEEIGVDSETGQTLFDA---YLARILAFEDAEGKIQQFSAAELA-NFTNALDQIAK 318 (486) T ss_pred HHHHHHHHHhhcchHHHhh--cCCccccccccccccchhhh---hhchhcccCCCCceEEeecccCHH-HHHHHHHHHHH Confidence 2221122223332222111 111111000 011111221 234555554 56777776554322 37788888888 Q ss_pred HHHHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecc Q lcl|Aclame:pro 270 RVANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNV 336 (409) Q Consensus 270 ~Ia~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~ 336 (409) +++..=++|+..+++... |.++.++. ....+...+.-.++.+....+. .........+++.+ T Consensus 319 ~~s~~~~~p~~~fg~~~~-n~~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~~~----~~~~~d~~~i~v~w 393 (486) T protein:vir:42 319 QVAAYTGLPPQYLSTAAD-NPASAEAIRAAESRLIKKVERKNLMFGGAWEEAMRIAYRIMKG----GDVPPDMLRMETVW 393 (486) T ss_pred HHhcccCCCHHHhccccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCccccceeeeEEe Confidence 999999999999976432 11222221 1122222222222222111111 00011123455666 Q ss_pred hhhhhhhHHHHHHHHHHHHhc--CCcCHHHHHHHhCCCCCC--CCCEEeecc---cccchhcc----cccccc-cCCCCC Q lcl|Aclame:pro 337 KSYLRADSATQAEVYFKAVRS--GYYTINDIREWEDLPPVE--GGDKPLISG---DLYPIDTP----LELRKS-LKGGDK 404 (409) Q Consensus 337 ~~l~~~d~~~~~~~~~~~~~~--g~~T~NE~R~~~g~~p~~--~gd~~~~~~---n~~~~~~~----~~~~~~-~~gg~~ 404 (409) ..-...+..+.++++.+++++ |+++..-+++.+|+.+.+ ....+.-.. ....++.. ...+.+ ..++++ T Consensus 394 ~~~~~~s~~~~ad~~~kl~~~~~g~~s~et~~~~lg~~~d~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (486) T protein:vir:42 394 RDPSTPTYAAKADAATKLYGNGQGVIPRERARIDMGYSVKEREEMRRWDEEEAAMGLGLLGTMVDADPTVPGSPSPTAPP 473 (486) T ss_pred cCCCCCCHHHHHHHHHHHHhcccCCCCHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCC Confidence 666778888999999999886 678877788888885432 111000000 00000000 000000 001111 Q ss_pred CC--------CCC Q lcl|Aclame:pro 405 NV--------NES 409 (409) Q Consensus 405 n~--------~~~ 409 (409) .+ .+| T Consensus 474 ~~~~~~~~~~~~~ 486 (486) T protein:vir:42 474 KPQPAIESSGGDA 486 (486) T ss_pred CCCcccCCCCCCC Confidence 11 111 No 159 >protein:vir:1634 Length: 409 # NCBI annotation: Structural protein # Family: family:all:524 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695055;genbank:gi:23455746;genbank:GeneID:955506 Probab=98.61 E-value=1.9e-07 Score=57.39 Aligned_cols=347 Identities=10% Similarity=0.001 Sum_probs=161.2 Q ss_pred Cc---chhhhhhhhhhh-----hcc-cccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MA---KENIVTRIKKKL-----IDN-WIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~---~~~~~~r~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |= +..+..++.... ... +.+... .-..+...+.... .+.-+...+..-+|+.+|..+.=-.| + T Consensus 1 ~~~~~i~~L~~~~~~~~~r~~~~~~yY~g~~~--~~~~~~~~p~~~~---~~~~~v~nw~~~iVds~a~rl~~~Gf---~ 72 (409) T protein:vir:16 1 MTEKGIGYLRFKLSVHKRRAEMRYEQYAMKHV--DRFKGITIPQALS---QQYRSILGWCAKGVDSLADRLVFREF---E 72 (409) T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHHhccCc--hhhcchhhhHHHH---HHHhhhcChhHHHHHHhHhhcccccc---c Confidence 32 222222221111 011 111100 0000000000000 00001123444555555543322222 2 Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCccee--EEE- Q lcl|Aclame:pro 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSREL--YYS- 148 (409) Q Consensus 72 ~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~--~~~- 148 (409) ..+ ..+...+. . | ........+..+.+++|.+|+.+..+..|.| .+.+++|..+....|+..... .+. T Consensus 73 ~~d---~~l~~i~~-~-N---~ld~~~~~~~~~al~yG~sf~~v~~~~dg~~-~i~~~sP~~~~~i~D~~~~~~~~a~~~ 143 (409) T protein:vir:16 73 NDD---FTVNEIFE-E-N---NPDIFFDSTVLSALIASCSFTYISKGENDAV-RLQVIEATNATGIIDPITGLLTEGYAV 143 (409) T ss_pred Ccc---hHHHHHHH-h-c---ChhHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEeecccccceeeeEE Confidence 221 22333322 1 2 2344556777889999999999998888875 788888888887776543221 111 Q ss_pred -EEcCCCeEE---EEccc----------------------eEEEecCcCcccccccccHH----HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 149 -IHAATGNKL---IVHNM----------------------DMLHFKHIVASNMVQGISPI----DVLKNTTDFDNAVRTF 198 (409) Q Consensus 149 -~~~~~g~~~---~~~~~----------------------~vih~~~~~~~~~~~G~sp~----~~~~~~i~~~~~~~~~ 198 (409) .....+... .+.++ -|++|.+........|.|-+ ..+.+.+.....-... T Consensus 144 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~~~~~~G~seI~~~v~~l~da~~r~~~~~~~ 223 (409) T protein:vir:16 144 LERDENNNVVLEAHFLPDRTDYYYRDSRNNISIANPTGNPLLVPIIHRPDAVRPFGRSRITRSGMYWQSNAKRTLERADV 223 (409) T ss_pred EEecCCCceEEEEEEecCcEEEEEecCccccceecCCCCcceEEecccccccccCCccccchhHHHHHHHHHHHHHHHHH Confidence 111122111 11222 24455444333556777743 3333333333332333 Q ss_pred HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-----CCceeeeccCChhhHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVAN 273 (409) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~ 273 (409) ...+++.+-..++-.+..- +..+ .|+.. .++++.++ ++.++.++..+.-+ .+++..+....++|+ T Consensus 224 ~~e~~a~pqr~i~G~d~d~--~~~~----~~~~~---~~~i~~~~~d~~g~~~~v~q~~~~~l~-~~~~~l~~~~~~~a~ 293 (409) T protein:vir:16 224 TAEFYSFPQKYVTGLSDDA--EPME----TWKAT---VSSMLQFTKDEDGDKPTLGQFTQPSMS-PFTEQLRTAAAGFAG 293 (409) T ss_pred HHHHhcChhheeEecCCCC--Cccc----hhhhh---hhHhhccCCCCCCCCceEEecCCCChh-HHHHHHHHHHHHHhh Confidence 4455555544444322211 1122 23221 23344443 33566666543222 488999999999999 Q ss_pred HhcCChhhcCCccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcChhh----ccccceEEecchhhh--- Q lcl|Aclame:pro 274 VFQLPSIFLNARSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNR----KLLTKTD----REKNRYFKFNVKSYL--- 340 (409) Q Consensus 274 ~fgvp~~~l~~~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~----~ll~~~~----~~~~~~~~~d~~~l~--- 340 (409) .-++|++.||.... ++......+...+...+ .-..+.+.+.+.+ .+.-... ......+++.+.+.. T Consensus 294 ~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~v~W~~~~~~~ 372 (409) T protein:vir:16 294 ETGLTLDDLGFVSDNPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYLAACLRDDVPYLREQFSKTKPKWEPLFEAD 372 (409) T ss_pred hcCCCHHHcccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCccchhhccceEEecCCCCcc Confidence 99999999987542 12222333333322222 1112222222221 1111111 111123444455443 Q ss_pred hhhHHHHHHHHHHHHhcCC--cCHHHHHHHhCCCCCC Q lcl|Aclame:pro 341 RADSATQAEVYFKAVRSGY--YTINDIREWEDLPPVE 375 (409) Q Consensus 341 ~~d~~~~~~~~~~~~~~g~--~T~NE~R~~~g~~p~~ 375 (409) ..+....++++.|++.+|. ...+-+++++|+..-+ T Consensus 373 ~~s~a~~aDa~~Kl~~a~~~~~~~~v~~~~~g~~~~d 409 (409) T protein:vir:16 373 ASMLSLIGDGAIKLNQAIPEFINKDTIRDLTGIKGAE 409 (409) T ss_pred hhhHHHHHHHHHHHHhhcccccchhHHHHhccCCCCC Confidence 3446788899999999973 4457789999998655 No 160 >protein:vir:8184 Length: 474 # NCBI annotation: gp4 # Family: family:all:524 # MgeID: mge:153 # MgeName: Che9d # Cross-refs: genbank:acc:NP_817977;genbank:gi:29566411;genbank:GeneID:2700965 Probab=98.60 E-value=2.2e-07 Score=57.11 Aligned_cols=390 Identities=11% Similarity=0.064 Sum_probs=169.4 Q ss_pred Ccch-------------hhhhh-------hhhhh--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHH Q lcl|Aclame:pro 1 MAKE-------------NIVTR-------IKKKL--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKL 58 (409) Q Consensus 1 M~~~-------------~~~~r-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~i 58 (409) |+.. .++.+ ...+. ...+...... +-..+...+..+ ........+...||+.+ T Consensus 1 ~~~~~~~~~~gl~~~~~~~~~~L~~~~~~~~~~~~~~~~Yy~G~~~-~~~~~~~~p~~~----r~~~~v~nw~~~~Vd~~ 75 (474) T protein:vir:81 1 MIQQQTVRIPSLSNDENALINGLLAQIENLRWKNLLRTSYYENKRT-IQYVGTLIPPQY----FNLGLVLGWTGKAVDAL 75 (474) T ss_pred CcCCCcCcCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC-hhhccccccHHH----HHHHhhcChHHHHHHHH Confidence 2221 11111 11111 1111111100 000000000000 01112234555677777 Q ss_pred HHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCce-eEEEeeCCcceEEE Q lcl|Aclame:pro 59 SNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP-SKLFLLNPDVVEML 137 (409) Q Consensus 59 a~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~-~~l~~l~p~~v~~~ 137 (409) ++.+.=-.|.+ .+++.....+.... .-|. .......+..+.+.+|++|+.+..+..|.+ ..+.+++|..+... T Consensus 76 a~rl~~~Gf~~-~d~~~~~~~l~~iw--~~N~---ld~~~~~~~~~al~~G~sf~~V~~~~d~~~~~~i~~~sp~~~~~~ 149 (474) T protein:vir:81 76 ARRCNLEGFVW-PDGDLDSLGGTEVV--DDNH---LLSEIDSAIVAAMQHGPAFLINTVGEDDEPEALIHVKDASEATGE 149 (474) T ss_pred HhhhcccceEC-CCCCccchHHHHHH--HhcC---hhHHHHHHHHHHHhhCceeEEEecCCCCCceeEEEEeccceEEEE Confidence 76555445543 12222222233332 1222 234556667789999999999988777764 46788899888877 Q ss_pred EcCCcceeE--E--EEEcCCCeEE---EEccce-------------------------EEEecCcCcccccccccHH-HH Q lcl|Aclame:pro 138 IENQSRELY--Y--SIHAATGNKL---IVHNMD-------------------------MLHFKHIVASNMVQGISPI-DV 184 (409) Q Consensus 138 ~~~~~~~~~--~--~~~~~~g~~~---~~~~~~-------------------------vih~~~~~~~~~~~G~sp~-~~ 184 (409) +|+...... + .....+|... .+.++. |++|.+........|.|.+ +. T Consensus 150 ~D~~~~~~~~al~~~~~~~~g~~~~~~ly~~~~~~~~~~~~~~~~w~~~~~~~~~gvPvV~~~n~~~~~~~~G~s~i~e~ 229 (474) T protein:vir:81 150 WNRRRRGLNNLLSIIDKDKEGKVLSLALYLDNETVTAQRDKATLKWQVDRDEHVYGVPAQVLPYKPAPKRPFGQSRITKP 229 (474) T ss_pred EeCCCCcceeeeEEEEEcCCCcEEEEEEEeCCcEEEEEEcCccceeeeccCCCCCCcceEEecccccccCcCCccccchh Confidence 765433211 1 1112222211 122222 3444443333444677744 23 Q ss_pred HHHHHHH---HHHHHHHHHHhcCCCceeEEecCCc-CCH---HHHHHHHHHHHHHh---cCCCceeecCCCceeeeccCC Q lcl|Aclame:pro 185 LKNTTDF---DNAVRTFNLTEMQKPDSFMLKYGSN-VST---EKRQQVLEDFKQYY---EENGGILFQEPGVEIEPLPKK 254 (409) Q Consensus 185 ~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~---~~~~~~~vl~~g~~~~~l~~~ 254 (409) +...++. ...-......+++.+-..++-.... ..+ +....++....... .+..+......+.++-++... T Consensus 230 v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G~~~~~~~d~d~~~~~~~~~~~~~i~~~~~d~d~~~~~~~~~~~~q~~~a 309 (474) T protein:vir:81 230 MMGLQDAGVRELARREGHMDVFSYPEFWLLGADESALKNADGTIKSVWEARLGRIKGLPDDADADIPQLARADVKQFPAA 309 (474) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchhheeecCChhhcccccccccchhhhhHHHHhcCCCcccccccccccccccccCCC Confidence 3333322 2222222344455554444322111 111 11223333332221 111112222234566665543 Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH---HHHHHHHHHHHHHHHHHHHHHHH----hhcChhh-- Q lcl|Aclame:pro 255 YVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE---LNRFYLQHTLLPIVKQYEEEFNR----KLLTKTD-- 325 (409) Q Consensus 255 ~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~---~~~~~~~~~l~P~~~~ie~~ln~----~ll~~~~-- 325 (409) . -..|++..+....++|+.-++|++.||.....|-++.+. +...+... ..-..+.+.+.+.+ .+.-... T Consensus 310 ~-l~~~~~~l~~~~~~~a~~t~iP~~~lG~~~~~np~SaeAi~a~~~~l~~k-ae~k~~~fg~~l~~~~rla~~i~~~~~ 387 (474) T protein:vir:81 310 S-PDAHWSDINGLAKLFAREASLPDTAVAISGLSNPTSAESYDASQYELIAE-AEGAVDDFTPALRKAFIRALAMKNKVA 387 (474) T ss_pred C-hhHHHHHHHHHHHHHHhhhCCCHHHhcccccccccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCC Confidence 2 223788899999999999999999998543333333322 22222222 12222222222222 1111110 Q ss_pred ----ccccceEEecchhhhhhhHHHHHHHHHHHHhcCC--cCHHHHHHHhCCCCCC---CCCEEeecccccchhcccccc Q lcl|Aclame:pro 326 ----REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGY--YTINDIREWEDLPPVE---GGDKPLISGDLYPIDTPLELR 396 (409) Q Consensus 326 ----~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~--~T~NE~R~~~g~~p~~---~gd~~~~~~n~~~~~~~~~~~ 396 (409) ......+++.+.+....+....++++.+++.+|. ....-+++++|+.+-+ ..+...-.....+++..... T Consensus 388 ~~~~~~~~~~~~v~W~d~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~t~~~i~~~~~~~~~~~~~~~~~~l~~~- 466 (474) T protein:vir:81 388 IDEIPDEWKSIDAKWRDPRYLSKSAQADAGMKQLAAVPWLAETEVGLELIGLTPQQARRAMADKRRVQGRGTLQALIDR- 466 (474) T ss_pred ccccchhhccceeEecCCCccCHHHHHHHHHHHHhcccCCCcHHHHHhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHhc- Confidence 1122345666677778889999999999999874 3345568888987642 01000000111122221110 Q ss_pred cccCCCCCCCC Q lcl|Aclame:pro 397 KSLKGGDKNVN 407 (409) Q Consensus 397 ~~~~gg~~n~~ 407 (409) ..++ ...+ T Consensus 467 -~~~~--~~aq 474 (474) T protein:vir:81 467 -SNNG--ATAQ 474 (474) T ss_pred -CCCC--CCCC Confidence 0111 1111 No 161 >protein:vir:103219 Length: 201 # NCBI annotation: hypothetical protein # Family: family:all:297 # MgeID: mge:1605 # MgeName: JK06 # Cross-refs: genbank:acc:YP_277473;genbank:gi:71834115;genbank:GeneID:3562330 Probab=98.59 E-value=8.8e-09 Score=64.74 Aligned_cols=181 Identities=12% Similarity=0.064 Sum_probs=94.3 Q ss_pred EEecCC--cCCHHHHHHHHHHHHHHh---cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCC Q lcl|Aclame:pro 210 MLKYGS--NVSTEKRQQVLEDFKQYY---EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNA 284 (409) Q Consensus 210 ~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~ 284 (409) |.+..+ .+-......+++++.... +..+.+.+...+-+|+.++.+...+ .+......+.||++-|||...|-+ T Consensus 1 V~k~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ld~~~e~~e~~~~~lsGl--~d~l~~~~~~iaa~s~iP~t~LfG 78 (201) T protein:vir:10 1 MWKAKGLADLCDDSDGAARLRLAQVDNNSGVGQAIGIDADSEEYNVLNSDIGGI--DTFLSQKFDRIVALSGIHEIILKG 78 (201) T ss_pred CccchHHHHHhcCChHHHHHHHHHHHHhhhhhhhheeecCCcceeeeecCcCCh--HHHHHHHHHHHHhHhcCchhhhcC Confidence 332211 111111234445555322 2234455666667888888776644 456677888999999999988865 Q ss_pred cccCc-cccHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHH-------H Q lcl|Aclame:pro 285 RSNTN-FAKNEELNRFYLQH-------TLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQA-------E 349 (409) Q Consensus 285 ~~~~~-~~~~e~~~~~~~~~-------~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~-------~ 349 (409) ...+. .++.+...+.||.. -+.|.++.+-+ -..+...+.| .+.+|...+.++++ + T Consensus 79 ~sp~Glnatge~d~~nyyd~i~~~Qe~~l~p~le~l~~--------~~~~~~~~~~--~f~pL~~~s~kekAei~~~~a~ 148 (201) T protein:vir:10 79 KNVGGVSASQNTALETFYGYVDRKRKAELLPLLEFLLP--------FIVTEQEWSV--EFNPLSQVSDKDKSEILEKNVN 148 (201) T ss_pred CCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhcCCCCceE--eeCCCCCCCHHHHHHHHHHHHH Confidence 54443 34555566566653 34444443332 2223344444 45577666655554 4 Q ss_pred HHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCCCCCCC Q lcl|Aclame:pro 350 VYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 350 ~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~ 408 (409) ++.+++++|+++++|+|+.|--.+..+ +++.+-++-+. +.....-+.+..+++ T Consensus 149 a~~~~~~~g~i~~~e~r~~L~~~~~~~----~~~~~~~~~~~--~~~e~~dp~~~~~~~ 201 (201) T protein:vir:10 149 SVAALIAAGIIDADEARDTLRAISTEV----KIGEGSIQTEV--VINESEDPLDVSANN 201 (201) T ss_pred HHHHHHHcCCCCHHHHHHHHHhcCCcC----CCCCCCCCccc--cccccCCCCCCCCCC Confidence 667888999999999999875544322 11111111111 000000011112222 No 162 >protein:vir:7987 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:151 # MgeName: Che8 # Cross-refs: genbank:acc:NP_817341;genbank:gi:29565769;genbank:GeneID:1258964 Probab=98.57 E-value=2.6e-07 Score=56.71 Aligned_cols=386 Identities=8% Similarity=-0.006 Sum_probs=169.0 Q ss_pred Ccc---hhhhhhh-------hhh---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAK---ENIVTRI-------KKK---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~---~~~~~r~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |-- ..|+.++ ..+ +.+-+-+.... .....-....+. ..+....+.+...+|+..++-+-.-|+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~i--~~~~~~~~~~~~--~~~~~~~~n~~~~ivd~~~~~l~~~g~ 76 (456) T protein:vir:79 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAPL--PELTRNTSAAWR--SFQREARTNWGLMVRDSVADRIIPNGI 76 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCh--hhcCcccChhhc--hhhhhhhcchHHHHHHHHHhhhccCCe Confidence 111 1111111 111 11111111110 000000011111 111122234667788888888877888 Q ss_pred eEeecccc-ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce-e Q lcl|Aclame:pro 68 KMYEDYKV-VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE-L 145 (409) Q Consensus 68 ~~~~~~~~-~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~-~ 145 (409) .+...++. ....+..++.. | ....+...+..+++.+|.||..+..+..|.+ .+..++|..+.+..++.... . T Consensus 77 ~~~~~~d~~~~~~~~~~~~~--n---~~d~~~~~~~~~a~~~G~a~~~~~~~edg~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) T protein:vir:79 77 TVGGSADSDLALRARRIWRD--N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) T ss_pred ecCCCCCccHHHHHHHHHHh--c---ChhHHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEeccceeEEEEcCCCCCce Confidence 76433322 22233333332 2 2345667788899999999999988888886 57888898888777653221 0 Q ss_pred --E-EEEEcCCCeE---EEEccce-------------------------------EEEecCcCc---ccccccccHHHHH Q lcl|Aclame:pro 146 --Y-YSIHAATGNK---LIVHNMD-------------------------------MLHFKHIVA---SNMVQGISPIDVL 185 (409) Q Consensus 146 --~-~~~~~~~g~~---~~~~~~~-------------------------------vih~~~~~~---~~~~~G~sp~~~~ 185 (409) . ..+...++.. ..+..+. +-|.-...| .....|+|-++.+ T Consensus 151 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~~~gd~e~v 230 (456) T protein:vir:79 151 RSAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPH 230 (456) T ss_pred EEEEEEEEecCCceeEEEEEcCCceEEEEEEEEeeccccceeeeccCCceeecccccCCCCceeEEEecCCCCCchhhhh Confidence 0 0011111100 0000010 111100000 0112466666665 Q ss_pred HHHHHHHHHHH--HH-HHHhcCCCceeEEec--CCcCCHHHHH--HHHHHHHHHhcCCCceeecCCCceeeeccCChhhH Q lcl|Aclame:pro 186 KNTTDFDNAVR--TF-NLTEMQKPDSFMLKY--GSNVSTEKRQ--QVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSE 258 (409) Q Consensus 186 ~~~i~~~~~~~--~~-~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~ 258 (409) ...++....+. .. ....+..+-..+.-. .....++.-. ...+.|. ...+++..++++.++.++..+.- - T Consensus 231 ~~liD~~~~~~s~~~~~~~~~a~~~~~~~G~~~~~~~~d~~g~~i~~~~~~~---~~~~~~~~~~~~~~~~q~~~~~~-~ 306 (456) T protein:vir:79 231 IDIINRINRAELQLLSTMAIQAFRQRALKSSEHRLPKVDENGNAIDYASIFE---AAPGALWELPPGVDIWESQTNDF-T 306 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcccccccccccccchhhhhh---hhccccccCCCCcceeeecccCh-H Confidence 55544322211 11 111111111000000 0000111101 1112222 23445667788888877654322 3 Q ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCcc-cCccccHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcChhhccccceEEe Q lcl|Aclame:pro 259 DIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNEELNRFYLQHTLLPIVKQYEEEFNRK---LLTKTDREKNRYFKF 334 (409) Q Consensus 259 ~~~e~~~~~~~~Ia~~fgvp~~~l~~~~-~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~---ll~~~~~~~~~~~~~ 334 (409) .+.+..+....+|++.-++|+..+++.. +.++...+.....+...+ .-..+.+...|.+. ++.-........++. T Consensus 307 ~~~~~l~~~i~~i~~~t~~p~~~~~~~~~N~Sg~Al~~~~~~l~~k~-~~~~~~f~~~l~~~~~l~~~~~g~~~~~~i~v 385 (456) T protein:vir:79 307 PMLSAIKEHIRQLSSATKTPLPMLMPDSANQSAEGAHNIEKGFLFKC-EDRLSIAKIGLEAILVKALQIEGESVEDTVDV 385 (456) T ss_pred HHHHHHHHHHHHHHhhcCCChhHhcccccCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccccceE Confidence 3788889999999999999999997632 111111122111111111 00111111111110 111111122234555 Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC----CCCEEeecccccchhcccccccccCCCCCCCCC Q lcl|Aclame:pro 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE----GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 335 d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~----~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~ 408 (409) .+......+..+.++++.+++..|+++..-+++.+|+.+.+ ..++..-..+. .. ......++++..- T Consensus 386 ~w~~~~~~s~~~~ada~~kl~~~G~~~~~~~~~~lg~~~~~i~~~e~~r~~~e~~~-----~~--~~~~~~~~~~~~~ 456 (456) T protein:vir:79 386 SFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQITL-----FA--GNPVQRPQEDGSR 456 (456) T ss_pred EeCCCCCcCHHHHHHHHHHHHhcCCChHHHHHhcCCCCHHHHHHHHHHHHHHHHHH-----Hh--hhHhhcCCCCCCC Confidence 56666777889999999999999999988888888886531 01100000000 00 0001112222222 No 163 >protein:vir:94101 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1494 # MgeName: 96 # Cross-refs: genbank:acc:YP_240229;genbank:gi:66395892;genbank:GeneID:5133270 Probab=98.55 E-value=3e-07 Score=56.33 Aligned_cols=392 Identities=13% Similarity=0.061 Sum_probs=173.5 Q ss_pred Ccchhhhhhhhhh--------------------h---hcccccCc----------ccccccccccCCCCccccchhHHhh Q lcl|Aclame:pro 1 MAKENIVTRIKKK--------------------L---IDNWIDQS----------ASKLYDFSPWKNKSFWGVINNTLET 47 (409) Q Consensus 1 M~~~~~~~r~~~~--------------------~---~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~ 47 (409) |-..+.+.-++.. + ...+.... ...+.....+.........++.=.. T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (474) T protein:vir:94 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLN 80 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccc Confidence 3332222222110 0 00000000 0000000000000000000011122 Q ss_pred hHHHHHHHHHHHHhhccCceeEeeccc-cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEE Q lcl|Aclame:pro 48 NETIFSAITKLSNSMASLPLKMYEDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKL 126 (409) Q Consensus 48 ~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l 126 (409) ++.....|+..+.-+-+-|+.+.-..+ .....+...|..- ............+..+++.+|.||.++..+.+|.+ .+ T Consensus 81 ~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~-~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~ 158 (474) T protein:vir:94 81 NSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNF-AIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RI 158 (474) T ss_pred cchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHH-HhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EE Confidence 445556677777767667877644322 2223333333322 11224566777888899999999999988888864 67 Q ss_pred EeeCCcceEEEEcCCcceeE----EEEE-cCCCeE---E-EEccceEEEecCcC-----------------c----cccc Q lcl|Aclame:pro 127 FLLNPDVVEMLIENQSRELY----YSIH-AATGNK---L-IVHNMDMLHFKHIV-----------------A----SNMV 176 (409) Q Consensus 127 ~~l~p~~v~~~~~~~~~~~~----~~~~-~~~g~~---~-~~~~~~vih~~~~~-----------------~----~~~~ 176 (409) ..++|..+.++.++.+.... |... ...+.. . .+....+.+++... | .+.. T Consensus 159 ~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 238 (474) T protein:vir:94 159 KNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNK 238 (474) T ss_pred EEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCC Confidence 78888888777766554321 1111 111111 1 11233333332110 0 0122 Q ss_pred ccccHHHHHHHHHHHHHHH---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccC Q lcl|Aclame:pro 177 QGISPIDVLKNTTDFDNAV---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPK 253 (409) Q Consensus 177 ~G~sp~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~ 253 (409) .|.|-++.+...+.....+ .......+..+-. ++ .+...+++....++ ..+.+.+.+++.+++-++. T Consensus 239 ~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l-~i-~g~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~ 308 (474) T protein:vir:94 239 EMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYL-VL-RGMGMSEEMIQETQ--------KSGAFELFDKDMDVKYLTK 308 (474) T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hh-ccCCCCchhhhhhh--------hcceeEecCCCCceeEEec Confidence 4666666655555433322 2222333333322 22 23334444333322 1344555566666666665 Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc-cCccccHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 254 KYVSEDIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNE----------ELNRFYLQHTLLPIVKQYEEEFNRKLLT 322 (409) Q Consensus 254 ~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~-~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll~ 322 (409) ...+..+....+...+.|...-++|..-.+... +.++...+ ......+...+.-.++.+...++.+-.. T Consensus 309 ~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~ 388 (474) T protein:vir:94 309 DVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYN 388 (474) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC Confidence 555566777888888999999998865443221 11111111 1122233334444444444444332111 Q ss_pred hhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeecccccchhccccccccc- Q lcl|Aclame:pro 323 KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGDLYPIDTPLELRKSL- 399 (409) Q Consensus 323 ~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~~~~~~~~~~~~- 399 (409) .. ......+.+.+..-...|..+.++.+.++ .|+++..-+.+++++-+-+. .+.+.-- .........+..... T Consensus 389 ~~-~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E-~~e~~~~~~~~~~~~~ 464 (474) T protein:vir:94 389 LD-DDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKE-SLEFNDKLPDIDEGDA 464 (474) T ss_pred CC-ccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHH-HHHHHhhcccccCCCc Confidence 00 01112355566676778899999999888 48899888888886533111 1111000 000000011111111 Q ss_pred -CCCCCCCCC Q lcl|Aclame:pro 400 -KGGDKNVNE 408 (409) Q Consensus 400 -~gg~~n~~~ 408 (409) +++++++.| T Consensus 465 ~~~~~~~~s~ 474 (474) T protein:vir:94 465 NDKSQNNQSE 474 (474) T ss_pred CCCCccccCC Confidence 111122222 No 164 >protein:vir:105889 Length: 474 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1514 # MgeName: phiETA3 # Cross-refs: genbank:acc:YP_001004371;genbank:gi:122891826;genbank:GeneID:4712360 Probab=98.55 E-value=3e-07 Score=56.33 Aligned_cols=392 Identities=13% Similarity=0.061 Sum_probs=173.5 Q ss_pred Ccchhhhhhhhhh--------------------h---hcccccCc----------ccccccccccCCCCccccchhHHhh Q lcl|Aclame:pro 1 MAKENIVTRIKKK--------------------L---IDNWIDQS----------ASKLYDFSPWKNKSFWGVINNTLET 47 (409) Q Consensus 1 M~~~~~~~r~~~~--------------------~---~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~ 47 (409) |-..+.+.-++.. + ...+.... ...+.....+.........++.=.. T Consensus 1 ~~~~~~~~~~~~~~~~~e~i~~~i~~~~~~~~r~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (474) T protein:vir:10 1 MTLYKLIDDIEAQGILPKHIEALIESHKDDRERMVNLYNRYKTHIDYVPIFKRRPIEEKEDFETGGNVRRLDVSVNNKLN 80 (474) T ss_pred CchHHHHhhccccCCCHHHHHHHHHHhhhhhHHHHHHHHHHhhhcchhhhhcchhhhhhhhhhhcccccccccCcccccc Confidence 3332222222110 0 00000000 0000000000000000000011122 Q ss_pred hHHHHHHHHHHHHhhccCceeEeeccc-cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEE Q lcl|Aclame:pro 48 NETIFSAITKLSNSMASLPLKMYEDYK-VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKL 126 (409) Q Consensus 48 ~~~v~~~i~~ia~~ia~lp~~~~~~~~-~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l 126 (409) ++.....|+..+.-+-+-|+.+.-..+ .....+...|..- ............+..+++.+|.||.++..+.+|.+ .+ T Consensus 81 ~n~~~~ivd~~~~yl~g~pv~~~~~~~~~~~e~~~~~l~~~-~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~~ 158 (474) T protein:vir:10 81 NSFDSEIVDTRVGYLHGVPVTYDLDENAEKNEKLKKFITNF-AIRNSVDDEDSEIGKMAAICGYGARLAYIDTNGDI-RI 158 (474) T ss_pred cchHHHHHHhHhhheeccceeEeeCCCCcchHHHHHHHHHH-HhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCee-EE Confidence 445556677777767667877644322 2223333333322 11224566777888899999999999988888864 67 Q ss_pred EeeCCcceEEEEcCCcceeE----EEEE-cCCCeE---E-EEccceEEEecCcC-----------------c----cccc Q lcl|Aclame:pro 127 FLLNPDVVEMLIENQSRELY----YSIH-AATGNK---L-IVHNMDMLHFKHIV-----------------A----SNMV 176 (409) Q Consensus 127 ~~l~p~~v~~~~~~~~~~~~----~~~~-~~~g~~---~-~~~~~~vih~~~~~-----------------~----~~~~ 176 (409) ..++|..+.++.++.+.... |... ...+.. . .+....+.+++... | .+.. T Consensus 159 ~~i~p~~~~~v~d~~~~~~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~ 238 (474) T protein:vir:10 159 KNIDPYNVIFVGDNILEPTYSLRYFYEKDDDNGTDYVYAEFYDNAYYYVFRGEGIDALQEVGRYEHLFDYNPLFGVPNNK 238 (474) T ss_pred EEEcccceEEEEcCCCceEEEEEEEEEeeCCCceEEEEEEEEcCceEEEEeecCCCcccccccccCCCCccceEEecCCC Confidence 78888888777766554321 1111 111111 1 11233333332110 0 0122 Q ss_pred ccccHHHHHHHHHHHHHHH---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccC Q lcl|Aclame:pro 177 QGISPIDVLKNTTDFDNAV---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPK 253 (409) Q Consensus 177 ~G~sp~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~ 253 (409) .|.|-++.+...+.....+ .......+..+-. ++ .+...+++....++ ..+.+.+.+++.+++-++. T Consensus 239 ~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~l-~i-~g~~~~~~~~~~~~--------~~~~i~~~~~~~~~~~l~~ 308 (474) T protein:vir:10 239 EMIGDAEKVIHLIDAYDLTMSDASSEISQTRLAYL-VL-RGMGMSEEMIQETQ--------KSGAFELFDKDMDVKYLTK 308 (474) T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcchh-hh-ccCCCCchhhhhhh--------hcceeEecCCCCceeEEec Confidence 4666666655555433322 2222333333322 22 23334444333322 1344555566666666665 Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcc-cCccccHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 254 KYVSEDIVASENLTRERVANVFQLPSIFLNARS-NTNFAKNE----------ELNRFYLQHTLLPIVKQYEEEFNRKLLT 322 (409) Q Consensus 254 ~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~-~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll~ 322 (409) ...+..+....+...+.|...-++|..-.+... +.++...+ ......+...+.-.++.+...++.+-.. T Consensus 309 ~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~l~~~~~~ 388 (474) T protein:vir:10 309 DVNDTMIENHLDRIEKNIMRFAKSVNFNSDEFNGNVPIIGMKLKLMALENKCMTFERKMTAMLRYQFKVILSALKRKGYN 388 (474) T ss_pred cCCHHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC Confidence 555566777888888999999998865443221 11111111 1122233334444444444444332111 Q ss_pred hhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeecccccchhccccccccc- Q lcl|Aclame:pro 323 KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGDLYPIDTPLELRKSL- 399 (409) Q Consensus 323 ~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~~~~~~~~~~~~- 399 (409) .. ......+.+.+..-...|..+.++.+.++ .|+++..-+.+++++-+-+. .+.+.-- .........+..... T Consensus 389 ~~-~~~~~~i~~~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~d~~~E~eri~~E-~~e~~~~~~~~~~~~~ 464 (474) T protein:vir:10 389 LD-DDSYLNLIFKFTRNIPVNKLEESQVLINL--KGQVSERTRLGQSQLVDDVDYELDEMEKE-SLEFNDKLPDIDEGDA 464 (474) T ss_pred CC-ccccccceEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHH-HHHHHhhcccccCCCc Confidence 00 01112355566676778899999999888 48899888888886533111 1111000 000000011111111 Q ss_pred -CCCCCCCCC Q lcl|Aclame:pro 400 -KGGDKNVNE 408 (409) Q Consensus 400 -~gg~~n~~~ 408 (409) +++++++.| T Consensus 465 ~~~~~~~~s~ 474 (474) T protein:vir:10 465 NDKSQNNQSE 474 (474) T ss_pred CCCCccccCC Confidence 111122222 No 165 >protein:vir:79043 Length: 479 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1861 # MgeName: phiC2 # Cross-refs: genbank:acc:YP_001110721;genbank:gi:134287338;genbank:GeneID:4955217 Probab=98.54 E-value=3.3e-07 Score=56.10 Aligned_cols=376 Identities=11% Similarity=0.009 Sum_probs=168.2 Q ss_pred Ccchhh--hhhhhhhhhcccccCcccccccc-cccCCCC-ccc-cchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc Q lcl|Aclame:pro 1 MAKENI--VTRIKKKLIDNWIDQSASKLYDF-SPWKNKS-FWG-VINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV 75 (409) Q Consensus 1 M~~~~~--~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~ 75 (409) |..... +.|.+. -+.+... -.... ....... ... .-.+.-..++.....|+..+.-+-.-|+.+..+++. T Consensus 32 ~~~~~~~~~~~~~~----yy~g~~~-i~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~Ivd~~~~~l~g~p~~~~~~~~~ 106 (479) T protein:vir:79 32 ILKHRPEKYKQGEE----YYYGNTD-VNNKRRYYLLDGAKVDDFTKVNNKAINNYHKLLVDQKVGYSVGNPIVFNADDDN 106 (479) T ss_pred HhhhhHHHHHHHHH----HhccCCc-ccccccccccccccccccccCcceeecchHHHHHHHHHhhhhcCCceeccCCHH Confidence 111100 111111 1111110 00000 0000000 000 001111234555667777777777778776433322 Q ss_pred ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee----EEEE Q lcl|Aclame:pro 76 VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL----YYSI 149 (409) Q Consensus 76 ~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~----~~~~ 149 (409) .. .+...+.. | ........++.+.+.+|.+|.++..+..|.+ .+..++|..+.+..++.. ... +|.. T Consensus 107 ~~-~~~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ir~y~~ 179 (479) T protein:vir:79 107 LT-KLLNDLLG--E---EFDDTITELYLNASNKGVEWLHPYINRKGEF-KYVIIPAEEAIPIWDSKRQRELVAFIRFYYI 179 (479) T ss_pred HH-HHHHHHHh--c---CHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEccceeEEEEeCCCCCceEEEEEEEEE Confidence 21 22222221 2 3456667777899999999999988888765 577788988888876542 111 2222 Q ss_pred EcCCCeEE----EEccceEEEecCcC-----------------------------------c----ccccccccHHHHHH Q lcl|Aclame:pro 150 HAATGNKL----IVHNMDMLHFKHIV-----------------------------------A----SNMVQGISPIDVLK 186 (409) Q Consensus 150 ~~~~g~~~----~~~~~~vih~~~~~-----------------------------------~----~~~~~G~sp~~~~~ 186 (409) ....+... .+.++.+.|++... | .+...|.|-++.+. T Consensus 180 ~~~~~~~~~~~e~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~sd~~~v~ 259 (479) T protein:vir:79 180 EDIDGNKIKRVEYYTENDITYFIERGNSFIQEFLYDEYGKMTDIQEGHFRINNKEQGWGKVPFIPFKNNEKCVSDLTFYK 259 (479) T ss_pred eecCCceEEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCcccEEEecCCCCCCcchhhhH Confidence 22222211 12344444432110 0 01124666666655 Q ss_pred HHHHHHHHH---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHH Q lcl|Aclame:pro 187 NTTDFDNAV---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVAS 263 (409) Q Consensus 187 ~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~ 263 (409) ..+.....+ .......++.+-..+.-.+....++....+ ..++++.++++.+++-++....+..+... T Consensus 260 ~liDa~d~~~S~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~---------~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 330 (479) T protein:vir:79 260 SLIDIYDNNISTLADNLDEIQEVIYVLKEYPGTSLQEFIDNI---------RYYKSIKVDGGGGVDKLEINIPVEAKKEL 330 (479) T ss_pred HHHHHHHHHHHHHHHHHHHhhCceeeeecCCccccccchhhh---------hhccceecCCCCcceEEeccCCHHHHHHH Confidence 555433322 222233444433222111111222211111 12345566666555555544455566777 Q ss_pred HHHHHHHHHHHhcCChhhcCCcccCccccH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEE Q lcl|Aclame:pro 264 ENLTRERVANVFQLPSIFLNARSNTNFAKN----------EELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFK 333 (409) Q Consensus 264 ~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~----------e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~ 333 (409) .+...+.|+..-++|..-.+..++.+.... ....+..+...+...++.+...++.+-... .....+. T Consensus 331 ~~~l~~~i~~~s~~p~~~~~~~gn~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~---~~~~~i~ 407 (479) T protein:vir:79 331 LDRLEKNIIIFGQGVNPESQNTGDKSGVALKFLYSLLDLKCSKTEKKFKKAIRELLWFVCEYLKISGNKS---YDYKTVQ 407 (479) T ss_pred HHHHHHHHHHHhCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc---cccccce Confidence 788888898888888654433221111111 111222333334444444433333221111 1123345 Q ss_pred ecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcc-----cccccccCCCCCCCCC Q lcl|Aclame:pro 334 FNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTP-----LELRKSLKGGDKNVNE 408 (409) Q Consensus 334 ~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~-----~~~~~~~~gg~~n~~~ 408 (409) +.+..-...+..+.++.+.++ .|+++...+.++++.-+-+..+ +..+..- ...+.....+++..+| T Consensus 408 i~f~~~~p~~~~~~a~~~~kl--~g~iS~et~l~~l~~v~d~~~E-------~~ri~~E~~~~~~~~~~~~~~~~~~~~e 478 (479) T protein:vir:79 408 ITFNHSMIINEAEKIDMAAKS--TGIVSDETIVSNHPWVEDVNDE-------LERLKKQEDTQKEYDDLIPNNQDGVIDE 478 (479) T ss_pred EEeCCCCCcCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHH-------HHHHHHHHHHHHHHHhccCcccCCCcCc Confidence 555666677889999998887 4889988888887652211000 1111100 0011112223334444 Q ss_pred C Q lcl|Aclame:pro 409 S 409 (409) Q Consensus 409 ~ 409 (409) + T Consensus 479 ~ 479 (479) T protein:vir:79 479 T 479 (479) T ss_pred C Confidence 4 No 166 >protein:vir:106639 Length: 481 # NCBI annotation: ORF003 # Family: family:all:125 # MgeID: mge:1557 # MgeName: 187 # Cross-refs: genbank:acc:YP_239490;genbank:gi:66395218;genbank:GeneID:4555793 Probab=98.45 E-value=6e-07 Score=54.71 Aligned_cols=392 Identities=10% Similarity=0.052 Sum_probs=173.3 Q ss_pred Ccch----hhhhhhhhh-------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKE----NIVTRIKKK-------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~----~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |... ++++..... +.+.+.+.... ....... ...+.. -...-..++....+|+..+.-+..-|+.+ T Consensus 29 ~~~~~~i~~~i~~~~~~~~~~~~~~~~yY~g~~~~-i~~~~~~-~~~~~~-~~~~ki~~n~~~~ivd~~~~~l~g~~~~~ 105 (481) T protein:vir:10 29 LLKEENLRNFISRHQTEQVPRLEMLESYYLNRNTD-ILAGERR-LQKYGD-KADHRAVHNYAKYVSRFIVGYLTGNPITI 105 (481) T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cccCccc-cccccc-cccceeecchHHHHHHHHHhhhccCCceE Confidence 1111 111111000 01111111100 0000000 000000 00111234566677888887777777766 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc--ee-- Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR--EL-- 145 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~--~~-- 145 (409) ...++.....+..++.. .....+...+..+.+.+|.+|+.+..+.+|.+ .+..++|..+.+..++... .. T Consensus 106 ~~~d~~~~~~l~~~~~~-----n~~~~~~~~~~~~~~~~G~~~~~~~~d~dg~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 179 (481) T protein:vir:10 106 THQDNQTNDKIIELNDL-----NDADEVNSDLALNLSIYGRAYEIVYRDFEDRD-TFKVLDPKSTFVVYDQTLDKKVVAG 179 (481) T ss_pred ecCChhHHHHHHHHHHh-----cChhHHHHHHHHHHHhcCeEEEEEEeCCCCeE-EEEEEcccceEEEEcCCCCCceEEE Confidence 54444444444444432 23567788888999999999999998888875 5788899998888766432 11 Q ss_pred --EEEEEcCCCeE----EEEccceEEEecCcC----------------c----ccccccccHHHHHHHHHHHHHHH---H Q lcl|Aclame:pro 146 --YYSIHAATGNK----LIVHNMDMLHFKHIV----------------A----SNMVQGISPIDVLKNTTDFDNAV---R 196 (409) Q Consensus 146 --~~~~~~~~g~~----~~~~~~~vih~~~~~----------------~----~~~~~G~sp~~~~~~~i~~~~~~---~ 196 (409) +|......+.. ..+.++.+.+++... | .+...|.|-++.+...+...... . T Consensus 180 i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~~~~~~v~~lida~~~~~s~~ 259 (481) T protein:vir:10 180 VRYFEKQDKDKVPVQHVEVYTTDKIYYIEIKGGTYHRVEEVEHYYNDVPIIEYLNDQFKQGDFENVIALIDLYDSAQSDT 259 (481) T ss_pred EEEEEEeeCCCceEEEEEEEecCeEEEEEecCCceeecccccccCCceeEEEeecCCCCCCchhhHHHHHHHHHHHHHHH Confidence 22222222221 123455555543111 0 01234667666555555433322 1 Q ss_pred HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 197 TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQ 276 (409) Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fg 276 (409) ......++.+ ..++......+++....++..-.-...........+++.++.-++.......+.+..+...+.|+..-+ T Consensus 260 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~ 338 (481) T protein:vir:10 260 ANYMTDLNDA-MLAIIGNVDLDSEDAKAFRDANMIHLEPGTNANGSEGKAEVKYVYKQYDVAGVEAYKKRLQNDIHKYTN 338 (481) T ss_pred HHHHHHhcCc-eeEeecCcCCCccchhhhhhccceeccccccccCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhC Confidence 2223334333 223322223344444433331000000000011112233444444444456677778888889999999 Q ss_pred CChhhcCCcccCccccHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhh Q lcl|Aclame:pro 277 LPSIFLNARSNTNFAKNEELNR-------------FYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) Q Consensus 277 vp~~~l~~~~~~~~~~~e~~~~-------------~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d 343 (409) +|....+... ++- +.++... ..+...+.-.++.+...++..-.. ......+.+.+..-...+ T Consensus 339 ~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~---~~~~~~i~v~f~~~~~~~ 413 (481) T protein:vir:10 339 TPDLNDEQFS-GVQ-SGESMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLTGLK---QHNYAELTITFTPNLPKS 413 (481) T ss_pred Cccccccccc-ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---ccccceeeEEeCCCCCcC Confidence 9876654321 221 1111111 111111121222122121111100 111234556666777888 Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCEEeecc-cccch-hcccccccccCCCCCCCCCC Q lcl|Aclame:pro 344 SATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDKPLISG-DLYPI-DTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 344 ~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~~~~~~-n~~~~-~~~~~~~~~~~gg~~n~~~~ 409 (409) ..+.++.+.++ .|+++.-.+.+++++-.-+ ..+.+.-.. ...+. ......+....+++.++.+| T Consensus 414 ~~~~a~~~~kl--~g~is~et~~~~l~~i~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~dd~~g 481 (481) T protein:vir:10 414 MMESINAFNAL--SGGVSESTRLSLLDFIDNPKEELEKMQEEEAQREKQADKRGYGEAFENHLNVDDSNG 481 (481) T ss_pred HHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhhhhccCCccCCCCCCCCCCCC Confidence 89999999888 4788887888887653211 111100000 00000 00011111223344444445 No 167 >protein:vir:3028 Length: 500 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:61 # MgeName: PhiNIH1.1 # Cross-refs: genbank:acc:NP_438141;genbank:gi:16271804;genbank:GeneID:929241 Probab=98.45 E-value=6.2e-07 Score=54.62 Aligned_cols=385 Identities=14% Similarity=0.081 Sum_probs=169.0 Q ss_pred Ccchhhhhhhhhhhhc---ccccCccccccc----------------c-----cccCCCCcccc----chhHHhhhHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLID---NWIDQSASKLYD----------------F-----SPWKNKSFWGV----INNTLETNETIF 52 (409) Q Consensus 1 M~~~~~~~r~~~~~~~---~~~~~~~~~~~~----------------~-----~~~~~~~~~~v----~~~~~~~~~~v~ 52 (409) |+++ .|+|+-+.. ..+.++.....+ | +.+....+... -.+......... T Consensus 1 m~~~---~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~ 77 (500) T protein:vir:30 1 MGVI---QKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIAR 77 (500) T ss_pred CchH---HHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHH Confidence 8774 333222111 111111100000 0 00000011111 011222333444 Q ss_pred HHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCc Q lcl|Aclame:pro 53 SAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPD 132 (409) Q Consensus 53 ~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~ 132 (409) .+++..|+-+..=|-.+.-+++.....+..+|. .-.+.......+...+..|.+++.+..+. |. ..+..+++. T Consensus 78 ~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il~-----~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~I~~v~ad 150 (500) T protein:vir:30 78 TAAKKIASLVFNEQAEIKVDDDAANEFISETLK-----NDRFNKNFERYLESCLALGGLAMRPYVDG-DK-VRVAFVQAP 150 (500) T ss_pred HHHHHHhhhhcCCcceEecCChHHHHHHHHHHh-----hccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cc-eEEEEEcCC Confidence 555666666655443332222222122222222 12345555666777888898887777664 33 345666777 Q ss_pred ceEEEEcCCcce-----------------eEEE-E---EcCC-------------------CeEEEE---c---cc---- Q lcl|Aclame:pro 133 VVEMLIENQSRE-----------------LYYS-I---HAAT-------------------GNKLIV---H---NM---- 162 (409) Q Consensus 133 ~v~~~~~~~~~~-----------------~~~~-~---~~~~-------------------g~~~~~---~---~~---- 162 (409) .+-+...+.+.. .+|. . ...+ |..+.+ . .. T Consensus 151 ~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~ 230 (500) T protein:vir:30 151 VFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKV 230 (500) T ss_pred eeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEe Confidence 666543222111 1110 0 0001 111110 0 00 Q ss_pred ------eEEEecCcCc----ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHH----HHHHH-HH Q lcl|Aclame:pro 163 ------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTE----KRQQV-LE 227 (409) Q Consensus 163 ------~vih~~~~~~----~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~ 227 (409) -..||+.+.+ ...+.|+|.+..+...+.............+..+...+......+... .-+.. .. T Consensus 231 ~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~ 310 (500) T protein:vir:30 231 TDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGDVVPRP 310 (500) T ss_pred ccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCccccCCc Confidence 1234443221 234569999999998886555443333333322222222111110000 00000 00 Q ss_pred HHHHHhcCCCce-eec----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH-HHHHH Q lcl|Aclame:pro 228 DFKQYYEENGGI-LFQ----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-NRFYL 301 (409) Q Consensus 228 ~~~~~~~~~~~~-~vl----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-~~~~~ 301 (409) .|. -..+. ..+ +++..++.++....+-++.+..+...++|+...|+++..++...++..+..|-. ...-. T Consensus 311 ~~d----~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~ 386 (500) T protein:vir:30 311 RFE----SDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDT 386 (500) T ss_pred ccC----CCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHH Confidence 010 00011 111 233457777777778889999999999999999999999987665543222210 11111 Q ss_pred HHHHHHHHHHHHHHHHHh---h--------cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh- Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRK---L--------LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE- 369 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~---l--------l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~- 369 (409) ..++.-..+.++.+|... + +..........+.+++++-...|..+.++...+++.+|+|+.-+++.++ T Consensus 387 ~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~ 466 (500) T protein:vir:30 387 YQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVL 466 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcC Confidence 112222333333333221 0 1111122344567777777788889999999999999999999988654 Q ss_pred CCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 370 DLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 370 g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |++.-+ ..+.+ ....+ +.....+..+++.. T Consensus 467 g~~eee-a~~~l--------~~i~~-E~~~~~~~~~~~~~ 496 (500) T protein:vir:30 467 NVTEEK-AQEIA--------AEINT-GIVDEINQQRTDTH 496 (500) T ss_pred CCCHHH-HHHHH--------HHHHH-hccccCCCCCcccc Confidence 554311 11110 00000 00111112222111 No 168 >protein:vir:9815 Length: 500 # NCBI annotation: putative minor capsid protein # Family: family:all:898 # MgeID: mge:176 # MgeName: 315.4 # Cross-refs: genbank:acc:NP_795577;genbank:gi:28876344;genbank:GeneID:1257866 Probab=98.45 E-value=6.2e-07 Score=54.62 Aligned_cols=385 Identities=14% Similarity=0.081 Sum_probs=169.0 Q ss_pred Ccchhhhhhhhhhhhc---ccccCccccccc----------------c-----cccCCCCcccc----chhHHhhhHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLID---NWIDQSASKLYD----------------F-----SPWKNKSFWGV----INNTLETNETIF 52 (409) Q Consensus 1 M~~~~~~~r~~~~~~~---~~~~~~~~~~~~----------------~-----~~~~~~~~~~v----~~~~~~~~~~v~ 52 (409) |+++ .|+|+-+.. ..+.++.....+ | +.+....+... -.+......... T Consensus 1 m~~~---~~~k~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~Y~g~~~~~~~~~~~~~~~~~~~~slnl~~ 77 (500) T protein:vir:98 1 MGVI---QKIKNLVTRSKYVMTTQSLTNITDHPKIAISKLEYDRITTNLKYYKSDWDSVLYLNTDGETKKRDLNHLPIAR 77 (500) T ss_pred CchH---HHHHHHHHHHHHHhhcchhhhhhccccccCCHHHHHHHHHHHHHhcCCCCCcccccCCCCcccCceeecchHH Confidence 8774 333222111 111111100000 0 00000011111 011222333444 Q ss_pred HHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCc Q lcl|Aclame:pro 53 SAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPD 132 (409) Q Consensus 53 ~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~ 132 (409) .+++..|+-+..=|-.+.-+++.....+..+|. .-.+.......+...+..|.+++.+..+. |. ..+..+++. T Consensus 78 ~i~~~~A~lv~~e~~~i~~~d~~~~~~l~~il~-----~n~f~~~~~~~~e~a~a~G~~~~k~~~d~-~~-~~I~~v~ad 150 (500) T protein:vir:98 78 TAAKKIASLVFNEQAEIKVDDDAANEFISETLK-----NDRFNKNFERYLESCLALGGLAMRPYVDG-DK-VRVAFVQAP 150 (500) T ss_pred HHHHHHhhhhcCCcceEecCChHHHHHHHHHHh-----hccHHHHHHHHHHHHhhcCCEEEEEEEeC-Cc-eEEEEEcCC Confidence 555666666655443332222222122222222 12345555666777888898887777664 33 345666777 Q ss_pred ceEEEEcCCcce-----------------eEEE-E---EcCC-------------------CeEEEE---c---cc---- Q lcl|Aclame:pro 133 VVEMLIENQSRE-----------------LYYS-I---HAAT-------------------GNKLIV---H---NM---- 162 (409) Q Consensus 133 ~v~~~~~~~~~~-----------------~~~~-~---~~~~-------------------g~~~~~---~---~~---- 162 (409) .+-+...+.+.. .+|. . ...+ |..+.+ . .. T Consensus 151 ~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~l~~~~~~ 230 (500) T protein:vir:98 151 VFLPLQSNTQDVSSAAVVIKSVKTINGKEVYYTLIEFHEWQSSDDYVISNELYRSDDKAKVGSRVPLSEVYKDLKDEAKV 230 (500) T ss_pred eeEEEEEcCCCeEEEEEEEEEeeeecCCceEEEEEEEEEEeCCceeEEEEEEEecccccccCcccccccccCCcCcceEe Confidence 666543222111 1110 0 0001 111110 0 00 Q ss_pred ------eEEEecCcCc----ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHH----HHHHH-HH Q lcl|Aclame:pro 163 ------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTE----KRQQV-LE 227 (409) Q Consensus 163 ------~vih~~~~~~----~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~ 227 (409) -..||+.+.+ ...+.|+|.+..+...+.............+..+...+......+... .-+.. .. T Consensus 231 ~~~~~p~f~~~~~~~~N~~~~~sp~G~S~~~~~~~lid~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~g~~~~~~ 310 (500) T protein:vir:98 231 TDVTRPIFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINTTYDEFMWEVKMGQRRVAVPESLTALTVRTTDGDVVPRP 310 (500) T ss_pred ccCCCccEEEecCCccccccCCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhCcceeeechHHhcccCCCCCccccCCc Confidence 1234443221 234569999999998886555443333333322222222111110000 00000 00 Q ss_pred HHHHHhcCCCce-eec----CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH-HHHHH Q lcl|Aclame:pro 228 DFKQYYEENGGI-LFQ----EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-NRFYL 301 (409) Q Consensus 228 ~~~~~~~~~~~~-~vl----~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-~~~~~ 301 (409) .|. -..+. ..+ +++..++.++....+-++.+..+...++|+...|+++..++...++..+..|-. ...-. T Consensus 311 ~~d----~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~gls~~~~~~~~~g~~TAtei~s~~~~~ 386 (500) T protein:vir:98 311 RFE----SDQNVYIRMGGRDLDSSAIQDLTTPIRADDYIKAINEGLSLFEMQIGVSAGLFSFDGKSMKTATEIVSENSDT 386 (500) T ss_pred ccC----CCcceEEEcCCCCCcCcceeEeccccChHHHHHHHHHHHHHHHHHhCCCccccccCcCccccHHHHHHHHHHH Confidence 010 00011 111 233457777777778889999999999999999999999987665543222210 11111 Q ss_pred HHHHHHHHHHHHHHHHHh---h--------cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh- Q lcl|Aclame:pro 302 QHTLLPIVKQYEEEFNRK---L--------LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE- 369 (409) Q Consensus 302 ~~~l~P~~~~ie~~ln~~---l--------l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~- 369 (409) ..++.-..+.++.+|... + +..........+.+++++-...|..+.++...+++.+|+|+.-+++.++ T Consensus 387 ~~t~~~~~~~~~~al~~lv~~il~~~~~~~~~~~~~~~~~~v~v~f~d~i~~d~~~~~~~~~~~v~aGi~s~~~~i~~~~ 466 (500) T protein:vir:98 387 YQMRNSIVALVEQSLKELVISIFEIAKAYDLYQSEVPSMDNISISLDDGVFTDRDAELDYWIKVVNAGFGTREMAIQKVL 466 (500) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHhcC Confidence 112222333333333221 0 1111122344567777777788889999999999999999999988654 Q ss_pred CCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 370 DLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 370 g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) |++.-+ ..+.+ ....+ +.....+..+++.. T Consensus 467 g~~eee-a~~~l--------~~i~~-E~~~~~~~~~~~~~ 496 (500) T protein:vir:98 467 NVTEEK-AQEIA--------AEINT-GIVDEINQQRTDTH 496 (500) T ss_pred CCCHHH-HHHHH--------HHHHH-hccccCCCCCcccc Confidence 554311 11110 00000 00111112222111 No 169 >protein:vir:105819 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1636 # MgeName: PMC # Cross-refs: genbank:acc:YP_655764;genbank:gi:109522087;genbank:GeneID:4157627 Probab=98.42 E-value=7.1e-07 Score=54.29 Aligned_cols=383 Identities=10% Similarity=0.012 Sum_probs=172.6 Q ss_pred Ccc---hhhhhhhhh----------hhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAK---ENIVTRIKK----------KLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~---~~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |-. ..++.++.. .+..-+-+... ......-....+. ....-..+.+...+|+..+.-+-.-|+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~--i~~~~~~~~~~~~--~~~~k~~~n~~~~ivd~~~~~l~~~~~ 76 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP--LPELTRNTSAAWR--SFQREARTNWGLMVRDSVADRIIPNGI 76 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chhcCcccChhhh--hhhhhhhcchHHHHHHHHHhhhccCCe Confidence 221 111111111 01111111110 0001000111111 111123345667788888888888888 Q ss_pred eEeeccccc-cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce-- Q lcl|Aclame:pro 68 KMYEDYKVV-NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE-- 144 (409) Q Consensus 68 ~~~~~~~~~-~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~-- 144 (409) .+....+.. ...+...+. . | ....+...+..+++.+|.||..+..+..|.+ .+..++|..+.+..|+.... T Consensus 77 ~~~~~~d~~~~~~~~~i~~-~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) T protein:vir:10 77 TVGGSADSDLALRARRIWR-D-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) T ss_pred ecCCCCCcchHHHHHHHHH-h-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEEccceeEEEEcCCCCcce Confidence 864332222 122333332 2 2 2345566778899999999999988888865 46778888888777654321 Q ss_pred ----eEEEEEcCCCeE-EEEc-------------------------cc------eEEEecCcCc---ccccccccHHHHH Q lcl|Aclame:pro 145 ----LYYSIHAATGNK-LIVH-------------------------NM------DMLHFKHIVA---SNMVQGISPIDVL 185 (409) Q Consensus 145 ----~~~~~~~~~g~~-~~~~-------------------------~~------~vih~~~~~~---~~~~~G~sp~~~~ 185 (409) .+|......+.. ..+. .. +.-|.-...| .....|+|-++.+ T Consensus 151 ~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~v 230 (456) T protein:vir:10 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPH 230 (456) T ss_pred EEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhh Confidence 111100000000 0000 00 0001000000 1112477777766 Q ss_pred HHHHHHHHHHHHH---HHHhcCCCceeEEec--CCcCCHHHHHH--HHHHHHHHhcCCCceeecCCCceeeeccCChhhH Q lcl|Aclame:pro 186 KNTTDFDNAVRTF---NLTEMQKPDSFMLKY--GSNVSTEKRQQ--VLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSE 258 (409) Q Consensus 186 ~~~i~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~ 258 (409) ...++....+.-. ....+..+-..+.-. .....++.-.. ....|+. ..+++..++++.++.++.... -. T Consensus 231 i~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~~~-~~ 306 (456) T protein:vir:10 231 IDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA---APGALWELPPGVDIWESQAND-FT 306 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhh---hccccccCCCCcceEEecccC-hh Confidence 6655544322211 111121111111100 00001111111 1112222 234566778899987776432 23 Q ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHH----HHHhh---cChhhccccce Q lcl|Aclame:pro 259 DIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEE----FNRKL---LTKTDREKNRY 331 (409) Q Consensus 259 ~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~----ln~~l---l~~~~~~~~~~ 331 (409) .+.+..+....+|++.-++|+..+++.. +|- +.+.. .+....+.-.+...+.. |.+.+ +.-........ T Consensus 307 ~~~~~l~~~i~~~~~~s~~p~~~~~~~~-~N~-Sg~Ai--~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~ 382 (456) T protein:vir:10 307 PMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQ-SAEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDT 382 (456) T ss_pred HHHHHHHHHHHHHHhccCCChHHhcccc-cCh-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Confidence 4788899999999999999999997632 121 11211 11111222222222222 21111 11111122234 Q ss_pred EEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC----CCCEEeecccccchhcccccccccCCCCCCCC Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE----GGDKPLISGDLYPIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~----~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~ 407 (409) +++.+......+..+.++++.+++..|+++..-+++++|+.+-+ ..++..-..+ .......+.++.|+. T Consensus 383 ~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~-------~~~~~~~~~~~~~~~ 455 (456) T protein:vir:10 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQIT-------LFAGNPVQRPQEDGS 455 (456) T ss_pred eeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHH-------HHhhhhhhcCCCCCC Confidence 55566666778889999999999999999988888888886531 0111000000 000011122333333 Q ss_pred C Q lcl|Aclame:pro 408 E 408 (409) Q Consensus 408 ~ 408 (409) . T Consensus 456 ~ 456 (456) T protein:vir:10 456 R 456 (456) T ss_pred C Confidence 3 No 170 >protein:vir:102602 Length: 456 # NCBI annotation: gp3 # Family: family:all:5096 # MgeID: mge:1661 # MgeName: Llij # Cross-refs: genbank:acc:YP_654999;genbank:gi:109392189;genbank:GeneID:4157224 Probab=98.42 E-value=7.1e-07 Score=54.29 Aligned_cols=383 Identities=10% Similarity=0.012 Sum_probs=172.6 Q ss_pred Ccc---hhhhhhhhh----------hhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAK---ENIVTRIKK----------KLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~---~~~~~r~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |-. ..++.++.. .+..-+-+... ......-....+. ....-..+.+...+|+..+.-+-.-|+ T Consensus 1 ~~~~t~~~~~~~l~~~~~~~~~r~~~l~~Yy~g~~~--i~~~~~~~~~~~~--~~~~k~~~n~~~~ivd~~~~~l~~~~~ 76 (456) T protein:vir:10 1 MTASTPAEWLPVLTKRIDDGMSRVRLLARYSNGDAP--LPELTRNTSAAWR--SFQREARTNWGLMVRDSVADRIIPNGI 76 (456) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--chhcCcccChhhh--hhhhhhhcchHHHHHHHHHhhhccCCe Confidence 221 111111111 01111111110 0001000111111 111123345667788888888888888 Q ss_pred eEeeccccc-cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcce-- Q lcl|Aclame:pro 68 KMYEDYKVV-NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRE-- 144 (409) Q Consensus 68 ~~~~~~~~~-~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~-- 144 (409) .+....+.. ...+...+. . | ....+...+..+++.+|.||..+..+..|.+ .+..++|..+.+..|+.... T Consensus 77 ~~~~~~d~~~~~~~~~i~~-~-N---~~d~~~~~~~~~a~i~G~ay~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~ 150 (456) T protein:vir:10 77 TVGGSADSDLALRARRIWR-D-N---RMDSVCKQWVKYGLDFGESYLTCWRRDDGTA-TITADSPETMVVSVDPLQPWRI 150 (456) T ss_pred ecCCCCCcchHHHHHHHHH-h-c---ChhhHHHHHHHHHhhcCeeEEEEeeCCCCce-EEEEEccceeEEEEcCCCCcce Confidence 864332222 122333332 2 2 2345566778899999999999988888865 46778888888777654321 Q ss_pred ----eEEEEEcCCCeE-EEEc-------------------------cc------eEEEecCcCc---ccccccccHHHHH Q lcl|Aclame:pro 145 ----LYYSIHAATGNK-LIVH-------------------------NM------DMLHFKHIVA---SNMVQGISPIDVL 185 (409) Q Consensus 145 ----~~~~~~~~~g~~-~~~~-------------------------~~------~vih~~~~~~---~~~~~G~sp~~~~ 185 (409) .+|......+.. ..+. .. +.-|.-...| .....|+|-++.+ T Consensus 151 ~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvv~~~N~~g~gd~e~v 230 (456) T protein:vir:10 151 RAAMRWWRDLDAESDFAIVWSGDGWQKFARPCFVQSSSRRRLVTRISDSWVPVGDAVVTGSPPPVVVYQNPDGMGEVEPH 230 (456) T ss_pred EEEEEEEEecCCceeEEEEEeccceeEEEEEEEEeecccceeeeecCCceeeccccCCCCCceeEEEecCCCCCchhhhh Confidence 111100000000 0000 00 0001000000 1112477777766 Q ss_pred HHHHHHHHHHHHH---HHHhcCCCceeEEec--CCcCCHHHHHH--HHHHHHHHhcCCCceeecCCCceeeeccCChhhH Q lcl|Aclame:pro 186 KNTTDFDNAVRTF---NLTEMQKPDSFMLKY--GSNVSTEKRQQ--VLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSE 258 (409) Q Consensus 186 ~~~i~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~ 258 (409) ...++....+.-. ....+..+-..+.-. .....++.-.. ....|+. ..+++..++++.++.++.... -. T Consensus 231 i~liDa~~~~~s~~~~~~~~~a~~~~~i~G~~~~~~~~d~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~q~~~~~-~~ 306 (456) T protein:vir:10 231 IDIINRINRAELQLLSTMAIQAFRQRALKSTEHGLPNVDENGNAIDYASIFEA---APGALWELPPGVDIWESQAND-FT 306 (456) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHhhhccCcccccccccccccchhhhhhh---hccccccCCCCcceEEecccC-hh Confidence 6655544322211 111121111111100 00001111111 1112222 234566778899987776432 23 Q ss_pred HHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHH----HHHhh---cChhhccccce Q lcl|Aclame:pro 259 DIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEE----FNRKL---LTKTDREKNRY 331 (409) Q Consensus 259 ~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~----ln~~l---l~~~~~~~~~~ 331 (409) .+.+..+....+|++.-++|+..+++.. +|- +.+.. .+....+.-.+...+.. |.+.+ +.-........ T Consensus 307 ~~~~~l~~~i~~~~~~s~~p~~~~~~~~-~N~-Sg~Ai--~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~g~~~~~~ 382 (456) T protein:vir:10 307 PMLSAIKEHIRQLSSATKTPLPMLMPDS-ANQ-SAEGA--HNIEKGFLFKCEDRLSIAKIGLEAILVKALQIEGESVEDT 382 (456) T ss_pred HHHHHHHHHHHHHHhccCCChHHhcccc-cCh-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc Confidence 4788899999999999999999997632 121 11211 11111222222222222 21111 11111122234 Q ss_pred EEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC----CCCEEeecccccchhcccccccccCCCCCCCC Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE----GGDKPLISGDLYPIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~----~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~ 407 (409) +++.+......+..+.++++.+++..|+++..-+++++|+.+-+ ..++..-..+ .......+.++.|+. T Consensus 383 ~~v~w~~~~~~~~~~~ada~~kl~~~gi~~~~~~~~~lg~~~~~i~~~e~er~~~e~~-------~~~~~~~~~~~~~~~ 455 (456) T protein:vir:10 383 VDVSFESPDRVTLGEKYSAASLAKAAGESWASIRRNILNYNADQIKQDDLDRAREQIT-------LFAGNPVQRPQEDGS 455 (456) T ss_pred eeEEecCCCCcCHHHHHHHHHHHHHcCCChHHHHHhhCCCCHHHHHHHHHHHHHHHHH-------HHhhhhhhcCCCCCC Confidence 55566666778889999999999999999988888888886531 0111000000 000011122333333 Q ss_pred C Q lcl|Aclame:pro 408 E 408 (409) Q Consensus 408 ~ 408 (409) . T Consensus 456 ~ 456 (456) T protein:vir:10 456 R 456 (456) T ss_pred C Confidence 3 No 171 >protein:vir:4898 Length: 502 # NCBI annotation: gp502 # Family: family:all:125 # MgeID: mge:107 # MgeName: Sfi11 # Cross-refs: genbank:acc:NP_056676;genbank:gi:9635011;genbank:GeneID:1262662 Probab=98.40 E-value=8.2e-07 Score=53.94 Aligned_cols=393 Identities=13% Similarity=0.050 Sum_probs=173.0 Q ss_pred Cc---chhhhhhhhh----h---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MA---KENIVTRIKK----K---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~---~~~~~~r~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) .. ..+++.+.+. + +.+-+.+.. ..+..-...... ...+.-..+......|+..+.-+-.-|+.+. T Consensus 40 ~~~~~i~~~i~~h~~~~~~rl~~l~~yY~g~~----~~i~~~~~~~~~-~~~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~ 114 (502) T protein:vir:48 40 NNWELLKNFINHHKLRQAPRIQELLDYARGEN----HDVLKSGRRKDN-EMADKRAVHNYGRMISKFKTGYLAGNPIRVE 114 (502) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----cccccccccccc-ccccceeecchHHHHHHHHhhhhcccCeeEe Confidence 00 0011111111 1 111111111 000000000000 0001112235556677777777778888876 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--ccee--- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SREL--- 145 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~--- 145 (409) ..++.....+...|.. ....-........+..+++.+|.||+++.++.+|.+ .+..++|..+.+..++. +... T Consensus 115 ~~d~~~~~~~~~~l~~-~~~~N~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~i 192 (502) T protein:vir:48 115 YDDNEDNSQNDDAIKR-IGRINDIDTHNRNLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAAV 192 (502) T ss_pred cCCccchhHHHHHHHH-HHhhcCHhHHHHHHHHHHhhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 5544444444444432 222234667888889999999999999999888864 57778899888887653 2221 Q ss_pred -EEEEEcCCC-eE-E-EEccceEEEecCcC----------c---------ccccccccHHHHHHHHHHHHHHHHHH---H Q lcl|Aclame:pro 146 -YYSIHAATG-NK-L-IVHNMDMLHFKHIV----------A---------SNMVQGISPIDVLKNTTDFDNAVRTF---N 199 (409) Q Consensus 146 -~~~~~~~~g-~~-~-~~~~~~vih~~~~~----------~---------~~~~~G~sp~~~~~~~i~~~~~~~~~---~ 199 (409) +|......+ .. + .+.++.++++.... + .+...|.|-++.+...++....+... . T Consensus 193 r~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~ 272 (502) T protein:vir:48 193 RYYNRGTLQNAKDVVEIYTNQHIYTLDASDSFNEISVTPHAFGTVPITEFLNNADGIGDYETELYLIDLYDSAESDTANH 272 (502) T ss_pred EEEEEeecCCcEEEEEEEeCCeEEEEEeCCceeeccceecCCCccceEEecCCCCCCCchhhhHHHHHHHHHHHHHHHHH Confidence 122112211 11 1 23445554442110 0 11235777777766666544433222 2 Q ss_pred HHhcCCCceeEEecCCc-CCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 200 LTEMQKPDSFMLKYGSN-VSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLP 278 (409) Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp 278 (409) ...+..+-. ++..... ..++....+++...-.....+..-..+++.++..++....+..+....+...+.|+..-++| T Consensus 273 ~~~~~~~~l-v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~L~~~I~~~s~~p 351 (502) T protein:vir:48 273 MSDMADAIL-AIYGDLALPQGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNKDIHVFTNTP 351 (502) T ss_pred HHHhcCcee-eeecCcccccccchhhhhhcceeeccccccccccccCcceeEeeecCCHHHHHHHHHHHHHHHHHHhCCC Confidence 333333322 2221111 11222222211100000001111112344555555554444556667788888999999998 Q ss_pred hhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHH Q lcl|Aclame:pro 279 SIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSA 345 (409) Q Consensus 279 ~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~ 345 (409) ....+.. .++- +.++. ....+...+.-.++.+...++..--.. ......+.+.+......|.. T Consensus 352 ~~~~~~~-~~n~-Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~--~~d~~~i~i~f~~~~p~d~~ 427 (502) T protein:vir:48 352 DMSDNHF-SGNA-SGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVNEFK--DFDESRLKITFTPNLPKSLY 427 (502) T ss_pred CcCcccc-ccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc--ccccccceEEeCCCCCcCHH Confidence 7554332 1221 11111 123333344444444443333221111 11122355556677788899 Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEee---cccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 346 TQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLI---SGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 346 ~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~---~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +.++.+.++ .|+++..-+.+.+++-..+. .+.+.- ...+.+... ......+.|.++.+++ T Consensus 428 e~a~~~~kl--~g~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~--~~~~~~~~~~d~~~e~ 492 (502) T protein:vir:48 428 EQVSILNDL--GGQVSQETALSLSGLVENPTEELDKINEESSKIDFKGYPS--YFYDNVGKYTDEVKET 492 (502) T ss_pred HHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhhhcccc--cccccccccCCCccCC Confidence 999999888 57899888888876532211 111100 000000000 0000011111111111 No 172 >protein:vir:9568 Length: 410 # NCBI annotation: gp34 # Family: family:all:524 # MgeID: mge:171 # MgeName: SM1 # Cross-refs: genbank:acc:NP_862873;genbank:gi:32469465;genbank:GeneID:1461310 Probab=98.36 E-value=1.1e-06 Score=53.26 Aligned_cols=356 Identities=9% Similarity=0.009 Sum_probs=162.2 Q ss_pred hhhhhhhh--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccchhhhhh Q lcl|Aclame:pro 7 VTRIKKKL--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLL 84 (409) Q Consensus 7 ~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L 84 (409) ++....+. ...+-.... .+-..+...+..... +.-+...+..-+|+.+|+.+.=-.| +..+ ..+...+ T Consensus 1 l~~~~~r~~~~~~yY~g~~-~~~~~~~~~p~~~~~---~~~~v~nw~~~~Vds~a~rl~~~Gf---~~~d---~~l~~i~ 70 (410) T protein:vir:95 1 MNLYQSRVNLRYKHYAMQH-YEAPTGITIPAHIRA---KYQAVLGWAAKGVDSLADRLIFRAF---ANDD---FNVTEIF 70 (410) T ss_pred CCcchhhHHHHHHHhcCCC-CccccchhccHHHHh---HHHhhcchhHHHHHHhHhhhccccc---cCCC---chHHHHH Confidence 22222211 111111000 000000000111100 0001223444555555543332222 2221 2343332 Q ss_pred hccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEE----EEEcCCCeE---E Q lcl|Aclame:pro 85 TVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYY----SIHAATGNK---L 157 (409) Q Consensus 85 ~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~----~~~~~~g~~---~ 157 (409) . . | ........+..+.+.+|.+|+.+..+.+|.| .+.+++|..+....|+....+.+ ......|.. . T Consensus 71 ~-~-N---~ld~~~~~~~~~al~~G~sf~~v~~~~d~~~-~i~~~sP~~~~~i~Dp~~~~~~~al~~~~~~~~~~~~~~~ 144 (410) T protein:vir:95 71 D-R-N---NPDIFFDSAILSALIGSCSFVYISKGEDDEV-RLQVIESSNATGVIDPITGLLVEGYAVLARDDYNRPTLEA 144 (410) T ss_pred h-h-c---ChHHHHHHHHHHHHHhCceeEEEecCCCCce-EEEEEcccceEEEEeCCCCceEEEEEEEEecCCCeEEEEE Confidence 2 1 2 2344556778899999999999998888875 68889999888887765433321 111222221 1 Q ss_pred EEccceE---------------------EEecCcCcccccccccHH----HHHHHHHHHHHHHHHHHHHhcCCCceeEEe Q lcl|Aclame:pro 158 IVHNMDM---------------------LHFKHIVASNMVQGISPI----DVLKNTTDFDNAVRTFNLTEMQKPDSFMLK 212 (409) Q Consensus 158 ~~~~~~v---------------------ih~~~~~~~~~~~G~sp~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 212 (409) .+.++.+ ++|.+....+...|.|-+ ..+.+.+.....-......+++.+-..++- T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~g~vPvV~f~n~~~l~~~~G~s~I~~~v~~l~da~~r~~~~~~~~~e~~a~pqr~i~G 224 (410) T protein:vir:95 145 YFEPNATHFIPKDGEPYSVTNETGIPLLVPVIHRPDAVRPFGRSRITRAGMYYQKYAKRTLERADITAEFYSWPQKYILG 224 (410) T ss_pred EEeCCcEEEEeeCCccccccCCCCCcceEEecccccCCccCCccccchhHHHHHHHHHHHHHHHHHHHHHhcchhheeec Confidence 2333333 444433333445677733 333333332222223334455555444432 Q ss_pred cCCcCCHHHHHHHHHHHHHHhcCCCceeecCC-----CceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc Q lcl|Aclame:pro 213 YGSNVSTEKRQQVLEDFKQYYEENGGILFQEP-----GVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN 287 (409) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~ 287 (409) .+. +.+..+. |+.. .++++.++. +.++.++....-+ .+++..+....+||+.-++|++.||.... T Consensus 225 ~d~--d~~~~~~----~~~~---~~~i~~~~~~~~~~~~~v~q~~~~~l~-~~~~~l~~l~~~~a~~s~lP~~~lg~~~~ 294 (410) T protein:vir:95 225 LDP--DAEPMEK----WKAT---VSSLLTISSSDKGVKPSVGQFTTASMS-PFTEQLRTAAAGFAGEMGLTLDDLGFVSD 294 (410) T ss_pred cCC--CCCcCch----hhhh---hhhheeccCCCCCCcceEEecCCCChH-HHHHHHHHHHHHHhhhcCCCHHHhccccC Confidence 221 1111222 2221 234555542 3566665443222 48899999999999999999999986442 Q ss_pred --CccccHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcChhh----ccccceEEecch---hhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 288 --TNFAKNEELNRFYLQHTLLPIVKQYEEEFNR----KLLTKTD----REKNRYFKFNVK---SYLRADSATQAEVYFKA 354 (409) Q Consensus 288 --~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~----~ll~~~~----~~~~~~~~~d~~---~l~~~d~~~~~~~~~~~ 354 (409) ++......+...+...+ .-..+.+.+.+.+ .+--... ......+++.+. .....+....++++.|+ T Consensus 295 NpsSa~Al~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~i~~~~~~~~~~~~~~~v~W~p~~d~~~~s~a~~aDa~~Kl 373 (410) T protein:vir:95 295 NPSSVEAIKASHENLRLAG-RKAQRSLGAGLLNVAYVAACLRDEFRYTRSQFVRTAVKWEPLFEADANTMTMIGDGVVKL 373 (410) T ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccceeeEEeeecCCcchhhHHHHHHHHHHH Confidence 11112222222222221 1122222223322 1111010 112223444444 23344678888898899 Q ss_pred Hhc--CCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCC Q lcl|Aclame:pro 355 VRS--GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGD 403 (409) Q Consensus 355 ~~~--g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~ 403 (409) +.+ |+....-+++++|+.+-+ +.. . -++ +. ... |+ T Consensus 374 ~~a~~g~~~~~~~~~~lg~~~~~---~~~-~----~~~---e~--~~~-g~ 410 (410) T protein:vir:95 374 NQALPGYINAETIRDLTGIAGDM---SAK-P----VVS---EG--GSN-GE 410 (410) T ss_pred HHhccCCccHHHHHHhcCCChHH---HHH-H----HHH---HH--HhC-CC Confidence 988 677788899999997531 000 0 000 10 011 11 No 173 >protein:vir:4782 Length: 522 # NCBI annotation: putative minor capsid protein 1 # Family: family:all:898 # MgeID: mge:104 # MgeName: MM1 # Cross-refs: genbank:acc:NP_150162;swissprot:trembl:q94m49;genbank:gi:26553451;uniprot:Q94M49;genbank:GeneID:955983 Probab=98.34 E-value=1.2e-06 Score=52.98 Aligned_cols=393 Identities=12% Similarity=0.065 Sum_probs=169.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccc----------------ccccc-CCC----Ccc----ccchhHHhhhHHHHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLY----------------DFSPW-KNK----SFW----GVINNTLETNETIFSAI 55 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~----------------~~~~~-~~~----~~~----~v~~~~~~~~~~v~~~i 55 (409) |+.+-.+.+.-.+.......++..... .|..| .+. .+. ....+..........++ T Consensus 1 m~~~~~~k~~~~k~~~~~~~~~~~~i~~~~~i~~~~~~~~~i~~~~~~y~g~~~~~~~~~~~~~~~~~~~~slnl~~~i~ 80 (522) T protein:vir:47 1 MSLFQKVKDFFSRGRYYMQTSNLNSILEHPKIAVTQEEYDRIKRNLVYYQSKWDDVQYKNTDGDIKSRPMNHLPIARTAS 80 (522) T ss_pred CchHHHHHHHHHHHHHHhhcccchhccccCCCCCCHHHHHHHHHHHHHhcCCcccccccccCcchhcccceecchHHHHH Confidence 776432222211111111111110000 01000 000 000 01111222223344555 Q ss_pred HHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceE Q lcl|Aclame:pro 56 TKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVE 135 (409) Q Consensus 56 ~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~ 135 (409) +..|+-+..=|..+.-.++.....+..+|. .-.+...+...+...+..|.+++.+..+. |. ..+..+++..+- T Consensus 81 ~~~A~lv~~e~~~i~v~d~~~~~~l~~~l~-----~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~i~~v~ad~~~ 153 (522) T protein:vir:47 81 KKIASLVYNEQATITTKNEILQKFLDDMLT-----NDRFNKNFERYLESCLALGGLAMRPYIDG-DK-VRVAFIQAPVFF 153 (522) T ss_pred HHHhhhhcCCcceeecCChHHHHHHHHHHh-----hcchHHHHHHHHHHhhccCCEEEEEEEcC-Cc-eEEEEEcCCceE Confidence 556665554343332222222222223332 12344555666677778888877776663 33 334455555554 Q ss_pred EEE-cCCcc----------------eeEEE------------------------------EEc----CCCeEEEEc---- Q lcl|Aclame:pro 136 MLI-ENQSR----------------ELYYS------------------------------IHA----ATGNKLIVH---- 160 (409) Q Consensus 136 ~~~-~~~~~----------------~~~~~------------------------------~~~----~~g~~~~~~---- 160 (409) +.. +..+. ..+|. |.. ..|..+.+. T Consensus 154 P~~~~~~~~~e~a~~~~~~~~~~~~~~~yt~lE~he~~~~~~~~~~~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e 233 (522) T protein:vir:47 154 PLESNTQDVSSAAILTKTIKSEGRKNVYYTLVEFHEWVTADGQETGSTNDKKYYRITNELYRSDVNDVLGQRVNLSELDK 233 (522) T ss_pred EEEEcCCceEEEEEEEEEEeecccceeEEEEEEEeeecccccccccccccCCceEEEEEEeecCCCcccCcccccccccc Confidence 432 21111 01111 000 012211111 Q ss_pred ----cc----------eEEEecCcCc----ccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeE------EecCCc Q lcl|Aclame:pro 161 ----NM----------DMLHFKHIVA----SNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFM------LKYGSN 216 (409) Q Consensus 161 ----~~----------~vih~~~~~~----~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 216 (409) ++ -..||+.+.+ ...+.|+|.+..+...+.-.........+.+..+-..+ ++.... T Consensus 234 ~~~l~~~~~~~~~~~Plf~y~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~ 313 (522) T protein:vir:47 234 YKNLEPVTVFENLSRPLFTYLKTPGMNNKDINSPLGLSIFDNAKTTIDFINRSYDEFMWEVRMGQRRVIVPEHLTQRQYQ 313 (522) T ss_pred ccCCCCceEeCCCCcceEEEecCCcccccccCCCcCCchhhhhHHHHHHHHHHHHHHHHHHHhccceeecchHHhccCCC Confidence 01 1235554322 14567999999999888655443333232222221111 221111 Q ss_pred CCHHHHHHHHHHHH---HHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccH Q lcl|Aclame:pro 217 VSTEKRQQVLEDFK---QYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN 293 (409) Q Consensus 217 ~~~~~~~~~~~~~~---~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~ 293 (409) ..... ......|. ..|..-+ .-.+++-+++.++....+-++.+..+...+.|+...|+++..++...++.. +. T Consensus 314 ~~~g~-~~~~~~fd~~~~~f~~~~--~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~i~~~~gls~~tf~~~~~~~k-TA 389 (522) T protein:vir:47 314 RPDGT-IDFRPRFDVEQNVYMQIG--GSSMDAGGITDLTSPIRANDYILAISEGLKLFEMQIGVSSGMFTFDGQGMK-TA 389 (522) T ss_pred CCCcc-cccccccCcccceEeecC--CCCCCCCcceeeccccChHHHHHHHHHHHHHHHHHhCCCccccCccccccc-cH Confidence 00000 00000110 1111100 001233457777777788889999999999999999999999987655432 22 Q ss_pred HHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 294 EEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYY 360 (409) Q Consensus 294 e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~ 360 (409) .+. ....++.+|.-++..+.+..+..-+.-........+.+++++-...|..+.++...+++.+|+| T Consensus 390 tEi~s~~~~~~~t~~~~~~~~~~al~~lv~~i~~l~~~~~~~~~~~~~~~~i~v~f~D~i~~D~~~~~~~~~~~v~aG~~ 469 (522) T protein:vir:47 390 TEIVSENSDTYQMRSSIVALVEQSIKELCVSMCELGKAVGVYSGEIPELDDISVNLDDGVFTDRHAELDYWAKMVAAGFS 469 (522) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceeEEEcCCCCCCCHHHHHHHHHHHHhcCCC Confidence 222 2223333333333333322221111111122345677888888888999999999999999999 Q ss_pred CHHHHHHHh-CCCCCCCCCEEe--eccc---ccch--hcc-cccccccCCCCCCCCCC Q lcl|Aclame:pro 361 TINDIREWE-DLPPVEGGDKPL--ISGD---LYPI--DTP-LELRKSLKGGDKNVNES 409 (409) Q Consensus 361 T~NE~R~~~-g~~p~~~gd~~~--~~~n---~~~~--~~~-~~~~~~~~gg~~n~~~~ 409 (409) +.-+++.++ |++.-+ .++-+ +... ..|. +.. .+.+...+| | ++| T Consensus 470 s~e~~i~~~~g~~eee-a~~el~ri~~E~~~~~~~~~~~~~~~~~~~~~~-d---~~~ 522 (522) T protein:vir:47 470 TKKRAIGKTLNISGVE-AEKELNAINSELLPMNDAELAIYGMHDQNEEKA-D---DKG 522 (522) T ss_pred CHHHHHHhcCCCChHH-HHHHHHHHHHhhccCCCCCCCCCCCCCcccccC-C---CCC Confidence 999987654 654311 11000 0000 0010 000 001111111 1 122 No 174 >protein:vir:94805 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1531 # MgeName: 29 # Cross-refs: genbank:acc:YP_240531;genbank:gi:66396197;genbank:GeneID:5133585 Probab=98.31 E-value=1.5e-06 Score=52.56 Aligned_cols=380 Identities=11% Similarity=0.015 Sum_probs=163.0 Q ss_pred Ccchhhhhhh----hhh------hhcccccCcccccccccc-cCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENIVTRI----KKK------LIDNWIDQSASKLYDFSP-WKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~~~r~----~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |....++.++ ... +..-+.+.... ...... .........-.+.-..++....+|+..+.-+-+-|+.+ T Consensus 43 ~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~I-~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~G~p~~~ 121 (492) T protein:vir:94 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI-VKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 121 (492) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccccccccccccccccccccchHHHHHHHHHhhhcccCcee Confidence 2222222221 110 01111111100 000000 00000000011111234566677787777777777776 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY 147 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~ 147 (409) ...++.....+...+. | ........+..+++.+|.+|.++..+.+|.+ .+..++|..+.+..++. +..... T Consensus 122 ~~~d~~~~~~l~~~~~---n---~~~~~~~~~~~~a~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~v~d~~~~~~~~a~ 194 (492) T protein:vir:94 122 KHTDDEVVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAF 194 (492) T ss_pred ccCchHHHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 4443332222332222 2 2445666788899999999999998888875 57778998888876542 222211 Q ss_pred --EEEcCCC-eEEEEccceEEEecCc---------------------C-----cc----cccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 --SIHAATG-NKLIVHNMDMLHFKHI---------------------V-----AS----NMVQGISPIDVLKNTTDFDNA 194 (409) Q Consensus 148 --~~~~~~g-~~~~~~~~~vih~~~~---------------------~-----~~----~~~~G~sp~~~~~~~i~~~~~ 194 (409) .+..... ....+.+..|.++... + |. +...|.|-++.+...++.... T Consensus 195 ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~sd~e~v~~liDa~d~ 274 (492) T protein:vir:94 195 IRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNR 274 (492) T ss_pred EEEEeeccceeEEEEecCeEEEEEEecCeeeeccccccccccccccccCCCccceEEecCCCCCCCchHHHHHHHHHHHH Confidence 1111111 1112233333333210 0 00 112466767666655554433 Q ss_pred HH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 VR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERV 271 (409) Q Consensus 195 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 271 (409) +. ......+..+... ++ + .+.++...++.... ..+++-++++.+...+........+....+...+.| T Consensus 275 ~~S~~~~~~~~~~~p~lv-~~-g--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I 345 (492) T protein:vir:94 275 RLSDLSNTFKDSNELTYV-LK-N--YDDQELPEFKRLLR-----YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKI 345 (492) T ss_pred HHHHHHHHHHHhcCceee-ee-c--CCcccchhhHHHHh-----hccceecCCCCcceeEeccCCHHHHHHHHHHHHHHH Confidence 22 2223344444322 22 1 12222222222221 223444555544444444444455666777778888 Q ss_pred HHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchh Q lcl|Aclame:pro 272 ANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKS 338 (409) Q Consensus 272 a~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~ 338 (409) +..-++|..-.+.. .++ .+.++. ....+...+...++.+...++.+ .....+.+.+.. T Consensus 346 ~~~s~~p~~~~~~~-~~n-~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~-------~~~~~i~v~f~~ 416 (492) T protein:vir:94 346 MLFGQAVDFSSDKF-GSA-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK-------GEHKDVDISFNY 416 (492) T ss_pred HHHhCCcCCCcccc-ccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------cccceeeEEecC Confidence 88888875433221 111 111111 11222223333333333222211 122345566667 Q ss_pred hhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCEEee-----cccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 339 YLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDKPLI-----SGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 339 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~~~~-----~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) -...+..+.++.+.+++ |+++..-++++++.-+-+ ..+++.- ......+..... .......+.++.++ T Consensus 417 ~~p~~~~e~~~~~~kl~--giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~ 491 (492) T protein:vir:94 417 NKVANTELQVQTAQQSM--GIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGA-DSAQQQERSNNKES 491 (492) T ss_pred CCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccC-CCCccccCCccccC Confidence 77788999999988884 889988888888663321 1111100 000000000000 00000001111111 No 175 >protein:vir:80680 Length: 441 # NCBI annotation: gp3 # Family: family:all:524 # MgeID: mge:1884 # MgeName: PA6 # Cross-refs: genbank:acc:YP_001285579;genbank:gi:148727085;genbank:GeneID:5247051 Probab=98.30 E-value=1.5e-06 Score=52.47 Aligned_cols=373 Identities=10% Similarity=0.039 Sum_probs=158.9 Q ss_pred Ccc------hhhhhhhh---hh--hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAK------ENIVTRIK---KK--LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~------~~~~~r~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |-- ..++.... .+ ....+...... .-......+.. ..+....+....-+|+..+.-+--..|. T Consensus 1 ~~~~~~~~i~~l~~~~~~~~~r~~~l~~Yy~G~~~-i~~~~~~~~~~----~~~~k~~~n~~~~ivd~~~~~l~~~g~~- 74 (441) T protein:vir:80 1 MNSDELALIEGMYDRIQRLSSWHCCIEGYYEGSNR-VRDLGVAIPPE----LQRVQTVVSWPGIAVDALEERLDWLGWT- 74 (441) T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chhcCcccchh----hhhhhhhcchHHHHHHHHHhhhcccccc- Confidence 111 11111111 10 01111111100 00000000000 0111122234444555554443211222 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc-ee-EE Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR-EL-YY 147 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~-~~-~~ 147 (409) .. ....+..++.. | +.......+..+++.+|.||..+.++..|.+ .+.+++|..+.+.+++... .. .+ T Consensus 75 --~~--d~~~l~~i~~~--n---~~~~~~~~~~~~~~~~G~a~~~v~~d~~g~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 144 (441) T protein:vir:80 75 --NG--DGYGLDGVYAA--N---RLATASCDVHLDALIFGLSFVAIIPHGDGTV-SVRPQSPKNCTGKFSADGSRLDAGL 144 (441) T ss_pred --CC--ChHHHHHHHHh--c---CHHHHHHHHHHHHhhcCeeEEEEEeCCCCce-EEEEEccceEEEEEeCCCCceeEEE Confidence 11 11233333321 2 3577778888999999999999999988876 5788999988887765432 11 11 Q ss_pred E-E-EcCCC--eEEEEcc--------------------------ceEEEecCcCcccccccccHHH-HHHHHH---HHHH Q lcl|Aclame:pro 148 S-I-HAATG--NKLIVHN--------------------------MDMLHFKHIVASNMVQGISPID-VLKNTT---DFDN 193 (409) Q Consensus 148 ~-~-~~~~g--~~~~~~~--------------------------~~vih~~~~~~~~~~~G~sp~~-~~~~~i---~~~~ 193 (409) . + ....+ ....+.+ --|+||.+........|.|-+. .+...+ .... T Consensus 145 ~~~~~~~~~~~~~~vy~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~l~~~v~~liDa~~~~~ 224 (441) T protein:vir:80 145 VVQQTCDPEVVEAELLLPDVIVQVERRGSREWVEVDRIPNVLGAVPLVPIVNRRRTSRIDGRSEITRSIRAYTDEAVRTL 224 (441) T ss_pred EEEEEecCceEEEEEEecCeEEEEEEcCCcceeeccccccCCCceeEEEeeccccCCccCCcccchhhHHHHHHHHHHHH Confidence 1 0 00000 0011122 2345555544445556777543 233333 3322 Q ss_pred HHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCC-----CceeeeccCChhhHHHHHHHHHHH Q lcl|Aclame:pro 194 AVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEP-----GVEIEPLPKKYVSEDIVASENLTR 268 (409) Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~-----g~~~~~l~~~~~d~~~~e~~~~~~ 268 (409) +-.......++.+-..+ .+..+++...+. |+. ..+++..+++ +.++.++..+. -..+.+..+... T Consensus 225 s~~~~~~~~~~~~~~~i--~G~~~~~~~~~~----~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~i 294 (441) T protein:vir:80 225 LGQSVNRDFYAYPQRWV--TGVSADEFSQPG----WVL---SMASVWAVDKDDDGDTPNVGSFPVNS-PTPYSDQMRLLA 294 (441) T ss_pred HHHHHHHHhhcCceeee--ecCCccccccch----hhh---cccccccCCCCCCCCcceeEecCccc-hHHHHHHHHHHH Confidence 22222333344433322 232333322221 111 1233443332 24454444322 223677888889 Q ss_pred HHHHHHhcCChhhcCCcccCccccHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEec Q lcl|Aclame:pro 269 ERVANVFQLPSIFLNARSNTNFAKNEELN-------------RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFN 335 (409) Q Consensus 269 ~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~-------------~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d 335 (409) ..|+..-++|+..++..... .++.++.. ...+...+.-.++.+...++..-- .......+++. T Consensus 295 ~~~~~~~~~p~~~~g~~~~~-~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~~~~~~~---~~~~~~~i~~~ 370 (441) T protein:vir:80 295 QLTAGEAAVPERYFGFITSN-PPSGEALAAEESRLVKRAERRQTSFGQGWLSVGFLAAKALDSRVD---EADFFGDVGLR 370 (441) T ss_pred HHHhcccCCCHHHhccCCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---ccccceeeeEE Confidence 99999999999998764321 11222211 111112222222222222221110 11112345666 Q ss_pred chhhhhhhHHHHHHHHHHHHhcCCcC--HHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 336 VKSYLRADSATQAEVYFKAVRSGYYT--INDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 336 ~~~l~~~d~~~~~~~~~~~~~~g~~T--~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +......+..+.++++.+++.+|++. ..-+++.+|+.+.|-- ++. . .-....+...+..|.-+...+. T Consensus 371 f~~~~~~~~~e~ad~~~kl~~~g~~~~s~~~~~~~l~~~~~e~~-~~~--~---e~~e~~~~~~~~~~~~~~~~~~ 440 (441) T protein:vir:80 371 WRDASTPTRAATADAVTKLVGAGILPADSRTVLEMLGLDDVQVE-AVM--R---HRAESSDPLAVLAGAISRQTNE 440 (441) T ss_pred eCCCCCcCHHHHHHHHHHHHhcCcccccHHHHHHhCCCCHHHHH-HHH--H---HHHHHHHHHHHHhhhhhccccc Confidence 67777889999999999999999754 3457777777643210 000 0 0000000000000100000000 No 176 >protein:vir:98883 Length: 517 # NCBI annotation: portal # Family: family:all:898 # MgeID: mge:1568 # MgeName: BCJA1c # Cross-refs: genbank:acc:YP_164413;genbank:gi:56694903;genbank:GeneID:3197273 Probab=98.28 E-value=1.7e-06 Score=52.19 Aligned_cols=393 Identities=11% Similarity=0.003 Sum_probs=165.4 Q ss_pred Ccchhhhhhhhhhh---hcccccCcccccc----------------cccccCCCCccccc---------hhHHhhhHHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKL---IDNWIDQSASKLY----------------DFSPWKNKSFWGVI---------NNTLETNETIF 52 (409) Q Consensus 1 M~~~~~~~r~~~~~---~~~~~~~~~~~~~----------------~~~~~~~~~~~~v~---------~~~~~~~~~v~ 52 (409) |+.+ .|+|+-+ ......++..... .|-.|-.....-+. .+...+..... T Consensus 1 m~~~---~~ik~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~I~~w~~~Y~g~~~~~~~~~~~~~~~~~~~~sl~~~~ 77 (517) T protein:vir:98 1 MKVI---QRIKNFFKRGGYALSGQTLKSINDHEKINIDPNELARIERNLRQYEGDYPQVEYINSQGKIQERDYMTLNLRK 77 (517) T ss_pred CchH---HHHHHHHHHHHHHhcccchhHhhcCCceecCHHHHHHHHHHHHHhcCCCcccccccccccccccceeecCcHH Confidence 7764 2222211 1111111110000 01111000000000 00111112222 Q ss_pred HHHHHHHHhhccC--ceeEeeccc-----cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeE Q lcl|Aclame:pro 53 SAITKLSNSMASL--PLKMYEDYK-----VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSK 125 (409) Q Consensus 53 ~~i~~ia~~ia~l--p~~~~~~~~-----~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~ 125 (409) .+...+|+-+..= .+.+-.... .........|+.-- ....+....+..+.+.+..|.+++.+..+. |. .. T Consensus 78 ~i~~~~A~Ll~~e~~~i~v~d~~~~~~~~~~~~~~~e~l~~i~-~~n~f~~~~~~~~e~a~a~G~~a~k~~~d~-~~-~~ 154 (517) T protein:vir:98 78 LSADVLSGLVFNEQCEVYVSDAKDEEKKDNSFKTAHEFIQHVF-QHNKFIKNLSDYLEPTFALGGLTVRPYVDN-GE-IE 154 (517) T ss_pred HHHHHhhhhhcCCcceEEecccccccccccchhHHHHHHHHHH-HhccHHHHHHHHHHHHhhhCCEEEEEEEeC-Ce-eE Confidence 3333334333221 222211000 00111222222100 112234444556667778898888777664 33 33 Q ss_pred EEeeCCcceEEEEcCCcce-----------------eEEE------------------E-----EcC----CCeEEEEc- Q lcl|Aclame:pro 126 LFLLNPDVVEMLIENQSRE-----------------LYYS------------------I-----HAA----TGNKLIVH- 160 (409) Q Consensus 126 l~~l~p~~v~~~~~~~~~~-----------------~~~~------------------~-----~~~----~g~~~~~~- 160 (409) +..+++..+-+...+.+.+ .+|. + ... .|..+.+. T Consensus 155 I~~v~ad~~~Pl~~~~~~v~~~ai~~~~~~~~~~~~~~Yt~lE~H~~~~~~~~~~~y~I~n~ly~s~~~~~lG~~v~L~~ 234 (517) T protein:vir:98 155 FSWALANAFYPLRSNSNGISEGVMKSVTTKVIGNKTVYYTLLEFHEWEKTEEGESLYVITNELYKSDNEGEIGKRIPLEE 234 (517) T ss_pred EEEEcCCeeEEEEecCCCeEEEEEEEEEEEeecCCceEEEEEEEEecCceeccCCcEEEEEEEEecCCCccccccccccc Confidence 5556666555432221111 0110 0 000 12211110 Q ss_pred -----cc----------eEEEecCcCcc----cccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCH-- Q lcl|Aclame:pro 161 -----NM----------DMLHFKHIVAS----NMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVST-- 219 (409) Q Consensus 161 -----~~----------~vih~~~~~~~----~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 219 (409) ++ -+.|++.+.+. ..+.|+|.+..+...+.-.........+-+..+-..+..+...+.. T Consensus 235 ~~e~l~~~~~~~g~~~Plf~y~~~p~~N~~~~~splG~S~~~~a~~~~d~lD~~~s~~~~e~~~g~~~i~vp~~~l~~~~ 314 (517) T protein:vir:98 235 LYEGMQEKTYIQGLSRPLFNYLKPSGFNNINPHSPLGLGITDNSVSTLKKINDTYDQFWWEIKMGQRTVFVSDVMLRTVP 314 (517) T ss_pred cccCCCcceeECCCCcceEEEecCCcccccccCCCCCCchhhhhHHHHHHHHHHHHHHHHHHHhCCcceecChhhhcccc Confidence 11 12255543222 3467999999988887655544333333222222122111111100 Q ss_pred HH-HHHHHHHHHHHhcCCCce---eec-CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHH Q lcl|Aclame:pro 220 EK-RQQVLEDFKQYYEENGGI---LFQ-EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNE 294 (409) Q Consensus 220 ~~-~~~~~~~~~~~~~~~~~~---~vl-~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e 294 (409) +. -......|+ ...++ +-. +++-.++..+....+-++.+..+...++|+...|+++..++....+..+..| T Consensus 315 ~~~g~~~~~~~d----~~~~~y~~~~~~~~~~~i~~~~~~iR~e~~~~~~~~~L~~i~~~~Gls~~t~~~~~~~~kTATE 390 (517) T protein:vir:98 315 DESGMPPPQVFD----PDVNVYKSIRMGTDEEFVKDVTHDIRTEQYKEAINQALRTLEMELKLSVGTFSFDGRSMKTATE 390 (517) T ss_pred CCCCcccCCCCC----cccceeeeccCCCCCCceeeeccccchHHHHHHHHHHHHHHHHHhCCCcccccccccccccHHH Confidence 00 000000000 00000 001 1223467777777788899999999999999999999999876655432222 Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhh-----------cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCH Q lcl|Aclame:pro 295 EL-NRFYLQHTLLPIVKQYEEEFNRKL-----------LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTI 362 (409) Q Consensus 295 ~~-~~~~~~~~l~P~~~~ie~~ln~~l-----------l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~ 362 (409) .. .+.-.-.++.-+.+.++.+|...+ +..........+.+++++-...|.++.++...+++.+|+|+. T Consensus 391 i~s~~~~~~~t~~~~~~~~~~aL~~lv~~i~~l~~~~~~~~~~~~~~~~v~v~f~D~i~~D~~~~~~~~~~~v~aG~ms~ 470 (517) T protein:vir:98 391 IVSENDLTYRTRNDHVYEVEQFIKGLVISVLELAKTYKLFGGEIPSAEHIGVDFDDGVFQDRSALLRFYGQAKTFGFIPT 470 (517) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcceEEEcCCCCCCCHHHHHHHHHHHHhcCCCCH Confidence 11 111112234444444444444311 111112234567788888888899999999999999999999 Q ss_pred HHHHHHh-CCCCCCCCCEEe--ec---ccccchhcccccccccCCCCCCCC Q lcl|Aclame:pro 363 NDIREWE-DLPPVEGGDKPL--IS---GDLYPIDTPLELRKSLKGGDKNVN 407 (409) Q Consensus 363 NE~R~~~-g~~p~~~gd~~~--~~---~n~~~~~~~~~~~~~~~gg~~n~~ 407 (409) -+++.++ |+..- ..++.+ +. ....|.+.. +....+-..+++ T Consensus 471 ~~~i~~~~g~~ee-eA~~e~~~i~~E~~~~~~~~~~---~~~~~~~~gd~e 517 (517) T protein:vir:98 471 VEAIQRIFKVPKK-TAEQWLEEIRKDQIELDPVTIS---QRAQKRMFGDEE 517 (517) T ss_pred HHHHHHhCCCChH-HHHHHHHHHHHhccccCCCCcc---ccccCCCCCCCC Confidence 9987664 77532 111111 00 001111111 111111111222 No 177 >protein:vir:1587 Length: 508 # NCBI annotation: minor capsid protein # Family: family:all:898 # MgeID: mge:32 # MgeName: phig1e # Cross-refs: genbank:acc:NP_695169;swissprot:trembl:o03928;genbank:gi:23455800;interpro:IPR006432;uniprot:O03928;genbank:GeneID:955566 Probab=98.28 E-value=1.7e-06 Score=52.15 Aligned_cols=385 Identities=13% Similarity=0.068 Sum_probs=169.3 Q ss_pred Ccchhhhhhhhhhhhc---ccccC-cccccc----------------cccc-cCCC----Ccccc----chhHHhhhHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLID---NWIDQ-SASKLY----------------DFSP-WKNK----SFWGV----INNTLETNETI 51 (409) Q Consensus 1 M~~~~~~~r~~~~~~~---~~~~~-~~~~~~----------------~~~~-~~~~----~~~~v----~~~~~~~~~~v 51 (409) |+.+ .|+|+.+.+ .+... +..... .|.. +.+. .+..+ ..+........ T Consensus 1 m~~~---~~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ri~~~~~~y~g~~~~~~~~~~~~~~~~~~~~sln~~ 77 (508) T protein:vir:15 1 MGLI---QRIKDLFWKGAAATGVTGSLSKITDDPRISIDPDEYVRIQTDLDYYSDKLQYIHYQASDGIKKKRLKNTINMA 77 (508) T ss_pred CChH---HHHHHHHHHHHHHhccccchHHhhcccccccCHHHHHHHHHHHHHhcCCCcccccccCCCCccccceeecchH Confidence 7763 333332211 11100 000000 0000 0000 00000 00111122333 Q ss_pred HHHHHHHHHhhccCceeEeeccccc-cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeC Q lcl|Aclame:pro 52 FSAITKLSNSMASLPLKMYEDYKVV-NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLN 130 (409) Q Consensus 52 ~~~i~~ia~~ia~lp~~~~~~~~~~-~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~ 130 (409) ..+++..|+-+..=|..+.-.++.. ...+..+|.. -.+.......+.+.+..|.+++.+..+.. . ..+..++ T Consensus 78 ~~i~~~~A~lv~~e~~~i~v~~~~~~~e~l~~il~~-----n~f~~~~~~~~e~a~a~G~~~~k~~~d~~-~-~~i~~v~ 150 (508) T protein:vir:15 78 KTAARRIASVVFNEKAEIHVKDNNEADKFLNDVLED-----NDFKNKFEEALEKGVALGGFAMRPYIDGN-H-IKIAWVR 150 (508) T ss_pred HHHHHHHHhhhhCCCceEEeCCchHHHHHHHHHHHh-----ccHHHHHHHHHHHHhhcCceEEEEEEeCC-e-eEEEEEc Confidence 4555666666544343333222211 1112222221 12344455566788889999887776643 2 4556666 Q ss_pred CcceEEEEcCCcce-----------------eEEE-------------------EEcCC----CeEEEEc--------cc Q lcl|Aclame:pro 131 PDVVEMLIENQSRE-----------------LYYS-------------------IHAAT----GNKLIVH--------NM 162 (409) Q Consensus 131 p~~v~~~~~~~~~~-----------------~~~~-------------------~~~~~----g~~~~~~--------~~ 162 (409) |..+-+...+.+.+ .+|. |...+ |..+.+. .+ T Consensus 151 ad~~~P~~~d~~~~~~~af~~~~~~~~~~~~~~yt~lE~h~~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~e~~~l~~ 230 (508) T protein:vir:15 151 ADQFYPLQSNTNDISEAAIASRTQRTESNQTKYYTLLEFHQWQDNGSYQITNELYKSDSPDIVGNQVPLSTLPVYKELAP 230 (508) T ss_pred CCeeEEEEEcCCCeEEEEEEEEEEeecCCCceEEEEEEEEEEecCcceEEEEEEEecCCchhcCcccchhhcccccCCCc Confidence 76665532222221 0110 10000 1111110 01 Q ss_pred ----------eEEEecCcCcc----cccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCC--HHHHHHHH Q lcl|Aclame:pro 163 ----------DMLHFKHIVAS----NMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVS--TEKRQQVL 226 (409) Q Consensus 163 ----------~vih~~~~~~~----~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 226 (409) -.+||+.+.+. ..+.|+|.+..+...+...........+.+..+-..+..+...+. ++... T Consensus 231 ~~~~~g~~~p~f~y~~~~~~N~~~~~splG~S~~~~~~~lid~lD~~~s~~~~e~~~~~~~i~v~~~~l~~d~~~~~--- 307 (508) T protein:vir:15 231 QVTISGLQRPLFAYFKTPGANNINIESPLGLGVVDNAKHVLDDINDTHDQFIWEIRLGQKHIAVQPGMLRFDDEHKP--- 307 (508) T ss_pred ceEecCCCcceeEEecCCccccccCCCCcCCchHhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcCCCCCcc--- Confidence 12344432221 346799999999988876554433333333322222221111111 11000 Q ss_pred HHHHHHhcCCCcee-e----cCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH--HHHH Q lcl|Aclame:pro 227 EDFKQYYEENGGIL-F----QEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE--LNRF 299 (409) Q Consensus 227 ~~~~~~~~~~~~~~-v----l~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~--~~~~ 299 (409) .| ....+.. . .++|..++.++....+-++.+..+...+.|....|+++..++...++..+..|- .... T Consensus 308 -~~----~~~~~~~~~~~~~~~~~~~i~~~~~~ir~e~~~~~~~~~l~~~~~~~gls~~~f~~~~~~~~TAtei~s~~~~ 382 (508) T protein:vir:15 308 -TF----DTEQNVYVGVLSDDNNGLGVKDMTTPIRTVQYKDAIDHFIKEFEVQIGLSTGTFSYSNDGVKTATEVVSNNSM 382 (508) T ss_pred -cc----CCCCeeEEeccCCCCCCCceeEeecccChHHHHHHHHHHHHHHHHHhCCCchhcccccCccccHHHHHHHHHH Confidence 01 1111111 1 123455777777777788899999999999999999999998765544322221 1111 Q ss_pred HHHHHHHHHHHHHHHHHHHh---h--------cChh--------hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCc Q lcl|Aclame:pro 300 YLQHTLLPIVKQYEEEFNRK---L--------LTKT--------DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYY 360 (409) Q Consensus 300 ~~~~~l~P~~~~ie~~ln~~---l--------l~~~--------~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~ 360 (409) .+ .++.-..+.++.+|... + +... .......+.+++++-...|..+.++...+++.+|+| T Consensus 383 ~~-~t~~~~~~~~~~al~~lv~~il~l~~~~~~~~~g~~~~~~~~~~~~~~v~v~f~D~i~~d~~~~~~~~~~~v~aGi~ 461 (508) T protein:vir:15 383 TY-QTRSSYLTMVEKAIDELCQSIFELANAGALFDDGKPLFTLDSASQPLDIECHFDDGVFVNKDKQLEEDAKVLAIGAL 461 (508) T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccCCcceEEEeCCCCCCCHHHHHHHHHHHHhcCCC Confidence 11 12222333333333321 1 0000 011234567788888888999999999999999999 Q ss_pred CHHHHHHHh-CCCCCCCCCEEee--cccccchhcccccccccCCCCCCC Q lcl|Aclame:pro 361 TINDIREWE-DLPPVEGGDKPLI--SGDLYPIDTPLELRKSLKGGDKNV 406 (409) Q Consensus 361 T~NE~R~~~-g~~p~~~gd~~~~--~~n~~~~~~~~~~~~~~~gg~~n~ 406 (409) +.-+++... |++.- ..++.+- ... .+.+.....+....+|+.++ T Consensus 462 s~e~~i~~~~g~~de-ea~~el~ri~~E-~~~~~~~~~~~~~~~g~~ge 508 (508) T protein:vir:15 462 SKQTFLQRNYGMTDE-QAAEELAKIQSE-APTDTFEGGRSAILNGGDGE 508 (508) T ss_pred CHHHHHHhcCCCChH-HHHHHHHHHHHh-ccccCccccccccCCCCCCC Confidence 999988654 55431 1111110 000 01111111111222222222 No 178 >protein:vir:2341 Length: 488 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:51 # MgeName: Bxb1 # Cross-refs: genbank:acc:NP_075278;genbank:gi:12657865;genbank:GeneID:920078 Probab=98.23 E-value=2.2e-06 Score=51.57 Aligned_cols=387 Identities=12% Similarity=0.029 Sum_probs=157.8 Q ss_pred Ccc------hhhhhhhh-------hhh--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccC Q lcl|Aclame:pro 1 MAK------ENIVTRIK-------KKL--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASL 65 (409) Q Consensus 1 M~~------~~~~~r~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~l 65 (409) |.. ..++.++. .++ ...+-... .++......-... ..+.-....+...+|+.+++.+--- T Consensus 1 ~~~~~~~d~~~~i~~L~~~~~~~~~r~~~~~~Yy~g~----~~i~~~~~~~~~~-~~~~~~~~n~~~~ivd~~a~~l~~~ 75 (488) T protein:vir:23 1 MAETESIDPEKLRDQLLDAFENKQNELKSSKAYYDAE----RRPDAIGLAVPLD-MRKYLAHVGYPRTYVDAIAERQELE 75 (488) T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhhcCcccchh-hhhhhhhcchHHHHHHHHHHhhhcc Confidence 111 11111111 110 11111111 0110000000000 0111123345556667666544333 Q ss_pred ceeEeec---------cccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC--------CCceeEEEe Q lcl|Aclame:pro 66 PLKMYED---------YKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI--------YHQPSKLFL 128 (409) Q Consensus 66 p~~~~~~---------~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~--------~G~~~~l~~ 128 (409) .|.+-.. ++.....+...+. -| ........+..+++.+|.||.++.++. .|. ..+.+ T Consensus 76 Gf~~~~~~~~~~~~~~d~~~~~~l~~i~~--~N---~~~~~~~~~~~~a~i~G~a~~~v~~~~~~~~~~~~~~~-~~i~~ 149 (488) T protein:vir:23 76 GFRIPSANGEEPESGGENDPASELWDWWQ--AN---NLDIEATLGHTDALIYGTAYITISMPDPEVDFDVDPEV-PLIRV 149 (488) T ss_pred ceeccCCcccccccccchhHHHHHHHHHH--hc---ChhHHHHHHHHHHhhcCceEEEEecCCcccccCCCCCc-ceEEE Confidence 3433211 1111112222222 11 346667778889999999998876543 222 24667 Q ss_pred eCCcceEEEEcCCcceeE----EEEEcCCCeEE---EEccc-------------------------eEEEecCcCccccc Q lcl|Aclame:pro 129 LNPDVVEMLIENQSRELY----YSIHAATGNKL---IVHNM-------------------------DMLHFKHIVASNMV 176 (409) Q Consensus 129 l~p~~v~~~~~~~~~~~~----~~~~~~~g~~~---~~~~~-------------------------~vih~~~~~~~~~~ 176 (409) ++|..+.+.+++...... |.+...++... .+.++ -|++|++....... T Consensus 150 ~~p~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~~~~ 229 (488) T protein:vir:23 150 EPPTALYAEVDPRTRKVLYAIRAIYGADGNEIVSATLYLPDTTMTWLRAEGEWEAPTSTPHGLEMVPVIPISNRTRLSDL 229 (488) T ss_pred eccceeEEEEecCCCceEEEEEEEEecCCCcEEEEEEEecCcEEEEEecCCceEeccccccCCCCcceEEeccccccCCc Confidence 788877776654321111 11111111110 12222 24555544334455 Q ss_pred ccccHHH----HHHHHHHHHHHHHHHHHHhcCCCceeEEecCCcCCHHHH--HHHHHHHHHHhcCCCceeecCCC--cee Q lcl|Aclame:pro 177 QGISPID----VLKNTTDFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKR--QQVLEDFKQYYEENGGILFQEPG--VEI 248 (409) Q Consensus 177 ~G~sp~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vl~~g--~~~ 248 (409) .|.|-++ .+.+.+....+-......++..+-..+. +....+... +.-...|+. ..+++..+++| .+| T Consensus 230 ~G~s~i~~~v~~l~Da~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~g~~~~~ 304 (488) T protein:vir:23 230 YGTSEISPELRSVTDAAAQILMNMQGTANLMAIPQRLIF--GAKPEELGINAETGQRMFDA---YMARILAFEGGEGAHA 304 (488) T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh--CCCcccccccccccchhhhh---hhhhhccCCCCCCcee Confidence 6777554 2222222222211112222222211111 111111100 001111221 23455666555 567 Q ss_pred eeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHH-------------HHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 249 EPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELN-------------RFYLQHTLLPIVKQYEEE 315 (409) Q Consensus 249 ~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~-------------~~~~~~~l~P~~~~ie~~ 315 (409) .++..+.. -.+++..+....+|+..-++|+..+++... +.++.++.. ...+...+.-.++.+... T Consensus 305 ~q~~~~~~-~~~~~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~l~~~~ 382 (488) T protein:vir:23 305 EQFSAAEL-RNFVDALDALDRKAASYSGLPPQYLSSSSD-NPASAEAIKAAESRLVKKVERKNKIFGGAWEQAMRLAYKM 382 (488) T ss_pred EecCCCCh-HHHHHHHHHHHHHHhcccCCCHHHhccccC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 66654432 337788888899999999999999976432 212222211 111111222222222111 Q ss_pred HHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcC--CcCHHHHHHHhCCCCCC--CCCEEeec------cc Q lcl|Aclame:pro 316 FNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSG--YYTINDIREWEDLPPVE--GGDKPLIS------GD 385 (409) Q Consensus 316 ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~--~gd~~~~~------~n 385 (409) .+.. ........+++.+......+..+.++.+.+++.+| +++..-+++++|+-+.+ ..+...-. .. T Consensus 383 ~~~~----~~~~~~~~i~v~f~~~~~~s~~~~ada~~kl~~~g~~~~s~et~~~~l~~~~d~~~~~~~~~~~~~~~~~~~ 458 (488) T protein:vir:23 383 VKGG----DIPTEYYRMETVWRDPSTPTYAAKADAAAKLFANGAGLIPRERGWVDMGYTIVEREQMRQWLEQDQKQGLGL 458 (488) T ss_pred hcCC----CcchhhccceEEecCCCCCCHHHHHHHHHHHHhcccccCCHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH Confidence 1110 00011233555555666778888999999999876 78888888999875432 11110000 00 Q ss_pred ccch---h-cccccccccCCCCCCCCCC Q lcl|Aclame:pro 386 LYPI---D-TPLELRKSLKGGDKNVNES 409 (409) Q Consensus 386 ~~~~---~-~~~~~~~~~~gg~~n~~~~ 409 (409) +..+ . ..........|+..+++.. T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 486 (488) T protein:vir:23 459 IGSLYGASTPEGKPGEAPVGEPPAPEPD 486 (488) T ss_pred HHHHhccCCCcccCCCCCCCCCCCCCCC Confidence 0000 0 0000111122222233222 No 179 >protein:vir:93747 Length: 472 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1475 # MgeName: 55 # Cross-refs: genbank:acc:YP_240454;genbank:gi:66396119;genbank:GeneID:5133516 Probab=98.18 E-value=3e-06 Score=50.87 Aligned_cols=380 Identities=10% Similarity=0.008 Sum_probs=164.1 Q ss_pred Ccchhhhhhhhhhh----------hcccccCcccccccccc-cCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENIVTRIKKKL----------IDNWIDQSASKLYDFSP-WKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~~~r~~~~~----------~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) +....++.+..... ..-+-+.... +..... .........-.+.-...+....+|+..+.-+-.-|+.+ T Consensus 23 ~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i-~~~~~~~~~~~~~~~~~~~~ri~~n~~~~ivd~~~~~l~g~~~~~ 101 (472) T protein:vir:93 23 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI-VKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 101 (472) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccchhhccccccccccccccccchHHHHHHHHhhhhcccCeee Confidence 12222222211110 0101111000 000000 00000000001111224666777888887777777776 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY 147 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~ 147 (409) ...++.....+...+. | ........+..+++.+|.||.++..+.+|.+ .+..++|..+.+..++. +..... T Consensus 102 ~~~d~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~d~~~-~i~~~~p~~~~~i~d~~~~~~~~~~ 174 (472) T protein:vir:93 102 KHTDDEVVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAF 174 (472) T ss_pred ccCChHHHHHHHHHHh---c---cHHHHHHHHHHHHhhcCeEEEEEEECCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 4443332222322222 2 2345556677899999999999998888875 57778998888887642 222111 Q ss_pred --EEEcCCC-eEEEEccceEEEecCc---------------------C-----c----ccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 --SIHAATG-NKLIVHNMDMLHFKHI---------------------V-----A----SNMVQGISPIDVLKNTTDFDNA 194 (409) Q Consensus 148 --~~~~~~g-~~~~~~~~~vih~~~~---------------------~-----~----~~~~~G~sp~~~~~~~i~~~~~ 194 (409) .+..... ....+.+..+.++... + | .+...|.|-++.+...++.... T Consensus 175 ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~s~~e~v~~liDa~~~ 254 (472) T protein:vir:93 175 IRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNR 254 (472) T ss_pred EEEEEeecceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCCchhhhHHHHHHHHH Confidence 1111111 1111222233222100 0 0 0112467777766655544332 Q ss_pred H---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 V---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERV 271 (409) Q Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 271 (409) + .......+..+... ++ +. +.++.......+. ..+++.++++.+...++.......+....+...+.| T Consensus 255 ~~s~~~~~~~~~~~~~~~-~~-g~--~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i 325 (472) T protein:vir:93 255 RLSDLSNTFKDSNELTYV-LT-NY--DDQELPEFKRLLR-----YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKI 325 (472) T ss_pred HHHHHHHHHHHhcCceeE-ee-cC--CcccchhhHHHHh-----hccccccCCCCcceeEeecCCHHHHHHHHHHHHHHH Confidence 2 22223444444222 22 21 2222222222221 223444555555544554445666778888888999 Q ss_pred HHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchh Q lcl|Aclame:pro 272 ANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKS 338 (409) Q Consensus 272 a~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~ 338 (409) +..-++|..-.+... ++- +.++. ....+...+.-.++.+...++. . .....+.+.+.. T Consensus 326 ~~~s~~p~~~~~~~~-~n~-Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~-----~--~~~~~i~v~f~~ 396 (472) T protein:vir:93 326 MLFGQAVDFSSDKFG-SAP-SGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-----K--GEHKDVDISFNY 396 (472) T ss_pred HHHhCCCCCCccccc-cCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C--cccceeeEEeCC Confidence 999998865443221 111 11111 1122222233333333322221 1 122345555667 Q ss_pred hhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCEEee-----cccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 339 YLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDKPLI-----SGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 339 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~~~~-----~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ....|..+.++.+.++ .|+++..-+.++++.-+-+ ..+.+.- .....++... ......++.+.+++++ T Consensus 397 ~~p~~~~~~~~~~~k~--~giis~et~l~~l~~~~d~~~E~~ri~~E~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~ 471 (472) T protein:vir:93 397 NKVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDG-GADGAQQQERSNNKES 471 (472) T ss_pred CCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccCcCcc-cCCCCCCCCCCCcccC Confidence 7777889999998887 5789888888877653211 1111000 0000011000 0000011111111111 No 180 >protein:vir:96494 Length: 501 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1620 # MgeName: 2972 # Cross-refs: genbank:acc:YP_238488;genbank:gi:66391764;genbank:GeneID:5176916 Probab=98.17 E-value=3.2e-06 Score=50.67 Aligned_cols=393 Identities=12% Similarity=0.038 Sum_probs=171.6 Q ss_pred Ccc----hhhhhhhhhh-------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAK----ENIVTRIKKK-------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~----~~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) +-. .+++.+.... ..+-+.+... ...... ..... ..++.-..++....+|+..+.-+-.-|+.+ T Consensus 38 ~~~~~~i~~~i~~~~~~~~~r~~~~~~yY~g~~~-~i~~~~---~~~~~-~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~ 112 (501) T protein:vir:96 38 VNNWELLKNFINHHKLRQAPRIQELLDYARGENH-DVLKSG---RRKDN-EMADKRAVHNYGRMISKFKTGYLAGNPIRV 112 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cccCcc---ccCcc-ccccceeecchHHHHHHHHhhhhcccCeeE Confidence 111 1111111110 0111111110 000000 00000 011112335566677777777777778777 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--ccee-- Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SREL-- 145 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~-- 145 (409) ...++.....+...|.. ....-........+..+++.+|.+|..+.++.+|.+ .+..++|..+.++.++. +... T Consensus 113 ~~~~~~~~~~~~~~l~~-~~~~n~~~~~~~~~~~~~~~~G~a~~~v~~dedg~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 190 (501) T protein:vir:96 113 EYDDNDDNSQNDDAIKR-IGRINDLDSLNRTLIRDLSQTGRAYEVIYRSEYDET-RIKRLSPLETFVIYDNSLEDNSIAA 190 (501) T ss_pred eeCCccchhHHHHHHHH-HHHhcCHHHHHHHHHHHHhhcCeEEEEEEEcCCCce-EEEEEccceeEEEEcCCCCCceEEE Confidence 55544444444444432 222235567788888999999999999999988865 57778999888887754 2221 Q ss_pred --EEEEEcCCCe--EE-EEccceEEEecCc----------C-----c----ccccccccHHHHHHHHHHHHHHHHHH--- Q lcl|Aclame:pro 146 --YYSIHAATGN--KL-IVHNMDMLHFKHI----------V-----A----SNMVQGISPIDVLKNTTDFDNAVRTF--- 198 (409) Q Consensus 146 --~~~~~~~~g~--~~-~~~~~~vih~~~~----------~-----~----~~~~~G~sp~~~~~~~i~~~~~~~~~--- 198 (409) +|......+. .+ .+.++.+.++... + | .+...|.|.++.+...++....+... T Consensus 191 v~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~s~~~~ 270 (501) T protein:vir:96 191 VRYYNRGTLQSAKDVVEIYTDEHIYTLDASDDFNEISVTTHAFGTVPITEYLNNIDGIGDYETELYLIDLYDSAESDTAN 270 (501) T ss_pred EEEEEeecCCCcEEEEEEEcCCcEEEEeeCCCceeccccccCCCccceEEecCCccCCCchhhhHHHHHHHHHHHHHHHH Confidence 1221121111 11 2334444433210 0 0 11235777777666665544433222 Q ss_pred HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 199 NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLP 278 (409) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp 278 (409) ....+..+-..+.-....-.++....++....-.....+.......+.++.-++....+..+....+...+.|+..-++| T Consensus 271 ~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p 350 (501) T protein:vir:96 271 HMSDMADAILAIYGDLALPKGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNTP 350 (501) T ss_pred HHHHhcCceeeeecccccCcccchhhhhhcCeeeecccccccccccCcceeeEeccCCHHHHHHHHHHHHHHHHHHhCCc Confidence 23333333222211111111112222211000000111111122334454445544455556777778888899999998 Q ss_pred hhhcCCcccCccc--cHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHH Q lcl|Aclame:pro 279 SIFLNARSNTNFA--KNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSAT 346 (409) Q Consensus 279 ~~~l~~~~~~~~~--~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~ 346 (409) ..-.+... ++-| ..+. .....+...+.-.++.+...++..--.. ......+.+.+......+..+ T Consensus 351 ~~~~~~~~-~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~~~~--~~d~~~i~i~f~~~~p~n~~e 427 (501) T protein:vir:96 351 DMSDTNFS-GNTSGEALKYKLFGLDQDRVDTQSQFTKGLKRRYRLAARIGSLVNEFK--DFDESLLKITFTPNLPKSLNE 427 (501) T ss_pred ccCccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccccccceEEeCCCCCcCHHH Confidence 75553321 2211 1111 1112333333333333333333211111 111122455556777888999 Q ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEE----------eecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 347 QAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKP----------LISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 347 ~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~----------~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) .++.+.++. |+++..-+.+++++-.-|. .+.+ ..+..+.+... +. ..+-.+.+.+++ T Consensus 428 ~ad~~~kl~--g~iS~et~~~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~--~~--~~~~~e~~~d~~ 496 (501) T protein:vir:96 428 QVSILTGLG--GQVSQETALSLSGLVESPNEELDKINKEMSEIDFKGYSNDFNEHVG--KY--TDEVKETHTDDF 496 (501) T ss_pred HHHHHHHHh--ccCchHHHHHhCCCCCCHHHHHHHHHHHHHHhhccccccchhhccc--cc--CCcCCCCCCCcc Confidence 999999884 7888877888775532111 1100 11111111100 00 001111111222 No 181 >protein:vir:95113 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1549 # MgeName: X2 # Cross-refs: genbank:acc:YP_240817;genbank:gi:66394677;genbank:GeneID:5133907 Probab=98.15 E-value=3.5e-06 Score=50.49 Aligned_cols=379 Identities=11% Similarity=-0.013 Sum_probs=160.1 Q ss_pred Ccch-----hh-----------hhhhhhhhhcccccCccc-ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MAKE-----NI-----------VTRIKKKLIDNWIDQSAS-KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMA 63 (409) Q Consensus 1 M~~~-----~~-----------~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia 63 (409) +... .+ ..|... ...-+.+.... ............ ...-+..-..++....+|+..++-+- T Consensus 21 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~Yy~g~~~i~~r~~~~~~~~~~-~~~~~~~ki~~n~~~~Ivd~~~~~l~ 98 (474) T protein:vir:95 21 LKPQFETQEEMIIRLIDDHRKQLDKITV-GQRYYDKDNDIVKQMKKVDVYGNI-DYDKPDWRITTNFHQNLVDQKVSYVA 98 (474) T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHH-HHHHhcccCchhcccccccccccc-ccccccceeccchHHHHHHHHHhhhc Confidence 1000 00 111110 00001111000 000000000000 00001112224455667777777777 Q ss_pred cCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC-- Q lcl|Aclame:pro 64 SLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ-- 141 (409) Q Consensus 64 ~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~-- 141 (409) .-|+.+...++.....+...+. | ........+..+.+.+|.+|..+.++.+|++ .+..++|..+.+..++. T Consensus 99 g~p~~~~~~d~~~~~~l~~~~~---n---~~~~~~~e~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~d~~~~ 171 (474) T protein:vir:95 99 SKPVTYSCEDESVLKIIHDVLD---T---RWDNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKER 171 (474) T ss_pred cCCceeccCchHHHHHHHHHHh---c---cHHHHHHHHHHHHhhcCcEEEEEEecCCCce-EEEEEcccceEEEEcCCCC Confidence 7787765444333222333322 2 2455566678899999999999988888875 57778888888777653 Q ss_pred cceeE--EEEEcCCCe-EEEEccceEEEecCcC---------------------c---------ccccccccHHHHHHHH Q lcl|Aclame:pro 142 SRELY--YSIHAATGN-KLIVHNMDMLHFKHIV---------------------A---------SNMVQGISPIDVLKNT 188 (409) Q Consensus 142 ~~~~~--~~~~~~~g~-~~~~~~~~vih~~~~~---------------------~---------~~~~~G~sp~~~~~~~ 188 (409) +.... +.+...... ...+..+.+.+++... + .+...|.|-++.+... T Consensus 172 ~~~~~~i~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~l 251 (474) T protein:vir:95 172 EELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHIQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSL 251 (474) T ss_pred CceEEEEEEEEEcCeeEEEEEeCCeEEEEEEcCCccccccccCcccccccccccCCCccceEeecCCCCCCCcHHHHHHH Confidence 22211 111111111 1223344444332100 0 0123466666665555 Q ss_pred HHHHHHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 189 TDFDNAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 189 i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ++....+. ......+..+- .++ .+....+ .+.+... . ...+++.++++.+...++.......+....+ T Consensus 252 iDa~d~~~S~~~~~~~~~~~p~-lv~-~g~~~~~--~~~~~~~----~-~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~ 322 (474) T protein:vir:95 252 IDAIDKRLSDAQNMFDESVELI-YIL-KGYEGQD--LEEFMRG----L-KYYKAINVDGDGGVETIQVEVPVSSTKEYID 322 (474) T ss_pred HHHHHHHHHHHHHHHHHhcCce-eee-ecCCccc--chhhhhh----h-hccceeeccCCCceeEEeecCCHHHHHHHHH Confidence 54433222 22233333332 222 2222221 1111111 1 1344666666666655655555666777888 Q ss_pred HHHHHHHHHhcCChhhcCCcccCcccc--HH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEE Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARSNTNFAK--NE----------ELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFK 333 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~~~~~~~--~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~ 333 (409) ...+.|+..-++|..-.+.. .++-|. .+ +.....+...+...++.|.+.+..+ .....+. T Consensus 323 ~l~~~i~~~s~~p~~~~~~~-~~n~Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~g~~-------~d~~~i~ 394 (474) T protein:vir:95 323 LMRAYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELIGFIIDFNNLK-------MDVKDIE 394 (474) T ss_pred HHHHHHHHHhCCcccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------cccceee Confidence 88999999999986332211 111111 11 1112223333333333333322211 1222344 Q ss_pred ecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEee-----cccccchhcccccccccCCCCCCC Q lcl|Aclame:pro 334 FNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLI-----SGDLYPIDTPLELRKSLKGGDKNV 406 (409) Q Consensus 334 ~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~-----~~n~~~~~~~~~~~~~~~gg~~n~ 406 (409) +.+..-...|..+.++. +.++|+++...+.+.++.-+-+. .+.+.- ......... ...+....+.+.++ T Consensus 395 v~f~~~~p~d~~e~a~~---~~~~g~iS~et~i~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~-~~~d~~~~~~~~~~ 470 (474) T protein:vir:95 395 ISFNFNRMMNDAEQSQI---IAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDD-GGADGAQQQERSND 470 (474) T ss_pred EEeccCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhccccccc-ccCCCCcCCCCCcc Confidence 44445455566655554 55679999888888876532211 110000 000000000 00000111111222 Q ss_pred CCC Q lcl|Aclame:pro 407 NES 409 (409) Q Consensus 407 ~~~ 409 (409) +++ T Consensus 471 ~~~ 473 (474) T protein:vir:95 471 KES 473 (474) T ss_pred CCC Confidence 222 No 182 >protein:vir:97336 Length: 492 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1666 # MgeName: 52A # Cross-refs: genbank:acc:YP_240606;genbank:gi:66396273;genbank:GeneID:5133692 Probab=98.13 E-value=4e-06 Score=50.15 Aligned_cols=381 Identities=10% Similarity=-0.002 Sum_probs=163.9 Q ss_pred Ccchhhhhhh----hhh------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKENIVTRI----KKK------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~~~~~r~----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) +....++.+. ... +..-+.+.........-..........-++.-..+.....+|+..+.-+-.-|+.+. T Consensus 43 ~~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ri~~n~~k~Ivd~~~~yl~g~p~~~~ 122 (492) T protein:vir:97 43 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDIVKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAFK 122 (492) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHHHhhhhcccCceec Confidence 1111111211 110 011111111000000000000000000111112345666778877777777777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY- 147 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~- 147 (409) ..++.....+...+. | ........+..+++.+|.||.++..+.+|.+ .+..++|..+.+..++. +..... T Consensus 123 ~~d~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~a~~~v~~d~dg~~-~~~~~~p~~~~~i~d~~~~~~~~~~v 195 (492) T protein:vir:97 123 HTDDEVVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAFI 195 (492) T ss_pred cCchHHHHHHHHHHh---c---cHHHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 443332222322221 2 2345556678899999999999999888874 57778998888887643 222111 Q ss_pred -EEEcCCC-eEEEEccceEEEecCcC--------------------------c----ccccccccHHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 -SIHAATG-NKLIVHNMDMLHFKHIV--------------------------A----SNMVQGISPIDVLKNTTDFDNAV 195 (409) Q Consensus 148 -~~~~~~g-~~~~~~~~~vih~~~~~--------------------------~----~~~~~G~sp~~~~~~~i~~~~~~ 195 (409) .+..... ....+.+..+.++.... | .+...|.|-++.+...++....+ T Consensus 196 r~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~ 275 (492) T protein:vir:97 196 RMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNRR 275 (492) T ss_pred EEEeeccceeEEEEecCeEEEEEEecCeeeecccccccccccccccCCCCCcceEEecCCCCCCCchHhHHHHHHHHHHH Confidence 1111111 11122333333332100 0 01124677777666665544332 Q ss_pred HHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 196 RTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVA 272 (409) Q Consensus 196 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 272 (409) ... ....+..+... ++ + .+.++...++.... ..+++.++++.+...+.....+..+....+...+.|+ T Consensus 276 ~S~~~~~~~~~~~~~l~-~~-g--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~~I~ 346 (492) T protein:vir:97 276 LSDLSNTFKDSNELTYV-LK-N--YDDQELPEFKRLLR-----YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKIM 346 (492) T ss_pred HHHHHHHHHHhccceee-ee-c--CCcccchhHHHHHh-----hccceecCCCCcceeEeccCCHHHHHHHHHHHHHHHH Confidence 211 23333333222 21 1 12222222222221 2234445555554445544455667777888888999 Q ss_pred HHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhh Q lcl|Aclame:pro 273 NVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSY 339 (409) Q Consensus 273 ~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l 339 (409) ..-++|..-..... ++ .+.++. ....+...+...++.+...++. ......+.+.+..- T Consensus 347 ~~s~~p~~~~~~~~-~n-~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~-------~~~~~~i~v~f~~~ 417 (492) T protein:vir:97 347 LFGQAVDFSSDKFG-SA-PSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDI-------KGEHKDVDISFNYN 417 (492) T ss_pred HHhCCCCCCccccc-cC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CcccceeeEEecCC Confidence 99888864432211 11 111111 1122222333333333332221 11233455556667 Q ss_pred hhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEee-----cccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 340 LRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLI-----SGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 340 ~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~-----~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ...+..+.++.+.++ .|+++..-+.++++.-+-+. .+++.- ..+...+..... ....++.+.+.+++ T Consensus 418 ~p~~~~e~a~~~~kl--~G~iS~et~l~~l~~v~d~~~Eleri~~E~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 491 (492) T protein:vir:97 418 KVANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQTEYNKQLPNLDDGGA-DSAQQQERSNNKES 491 (492) T ss_pred CCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhccccCCC-CCCccccccccccc Confidence 778889999998888 58899888888886533211 111000 000000000000 00000000011111 No 183 >protein:vir:99072 Length: 479 # NCBI annotation: gp27 # Family: family:all:524 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655892;genbank:gi:109521464;genbank:GeneID:4158037 Probab=98.11 E-value=4.4e-06 Score=49.98 Aligned_cols=382 Identities=9% Similarity=0.022 Sum_probs=158.9 Q ss_pred Ccch--------hh--------hhhhhhh------hhcccccCcccccccccccCCC-Cccccc-hhHHhhhHHHHHHHH Q lcl|Aclame:pro 1 MAKE--------NI--------VTRIKKK------LIDNWIDQSASKLYDFSPWKNK-SFWGVI-NNTLETNETIFSAIT 56 (409) Q Consensus 1 M~~~--------~~--------~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~v~~~i~ 56 (409) |+.+ .+ +..+... ..+-+.+... ....... ...... .+....+.+...+|+ T Consensus 1 ~~~~p~~~l~~~~~~~~~~~~l~~~~~~~~~r~~~~~~YY~g~~~-----i~~~~~~~~~~~~~~~~~~~~~n~~~~iVd 75 (479) T protein:vir:99 1 MIDLPDEDLSSEGLAKYLETKVFPKMNTECERLDDFEAWTKNGQE-----VPDLATRHKNKEREVLQQLSRKPWMGLMVN 75 (479) T ss_pred CccCCcccCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCc-----ccccccccCChhHHHHHHHhhcCcHHHHHH Confidence 3321 11 1111000 0011111110 0000000 000000 011112345556777 Q ss_pred HHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee-----cCCCceeEEEeeCC Q lcl|Aclame:pro 57 KLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER-----DIYHQPSKLFLLNP 131 (409) Q Consensus 57 ~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~-----~~~G~~~~l~~l~p 131 (409) .+++-+---.|.+ .+......+...+.. | ........+..+++.+|.+|+++.. +..|.+ .+..++| T Consensus 76 ~~~~~l~~~gf~~--~d~~~~~~~~~i~~~--N---~~d~~~~~~~~~a~~~G~af~~v~~~~~~~d~~g~~-~i~~~~p 147 (479) T protein:vir:99 76 SFAQQLIVDGYRK--TGTNENAKGWDTWRL--N---QMDKQQFWLNRAVLTFGYAFIKVTSGISPLDGTTVA-RIKCIDP 147 (479) T ss_pred HHHhhcccccccC--CCchhhHHHHHHHHh--c---ChhHHHHHHHHHHhhcCceEEEEecCCCCcCCCCce-EEEEech Confidence 6666443223332 122222334443332 2 2235566778899999999988764 334443 4667788 Q ss_pred cceEEEEcCCcc--eeEEEEEcC-------------------CCeEE-------EEccceEEEecCcCcccccccccHHH Q lcl|Aclame:pro 132 DVVEMLIENQSR--ELYYSIHAA-------------------TGNKL-------IVHNMDMLHFKHIVASNMVQGISPID 183 (409) Q Consensus 132 ~~v~~~~~~~~~--~~~~~~~~~-------------------~g~~~-------~~~~~~vih~~~~~~~~~~~G~sp~~ 183 (409) ..+.+..++... ...|.+... .|... .+..=-|++|.+.... ...|.|-++ T Consensus 148 ~~~~~iydd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~g~vPvv~f~n~~~~-~~~g~sd~e 226 (479) T protein:vir:99 148 RDAFAIWEDPYWDEWPKYLLERQPNGQYWWWTEEDYSIFEFKQGKFIYRETVSHDYGHIPFVRYVNVMDL-RGVCYGDVE 226 (479) T ss_pred hheEEEecCCcccceeeEEEeecCceeEEEEecceEEEEEecCCceeeccccccCCCCcceEEeecCCCc-CcCCcchhH Confidence 877776544321 111221111 11111 0112234555554322 346888777 Q ss_pred HHHHHHHHHHHHHH---HHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceee-cCCCceeeeccCChhhHH Q lcl|Aclame:pro 184 VLKNTTDFDNAVRT---FNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILF-QEPGVEIEPLPKKYVSED 259 (409) Q Consensus 184 ~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-l~~g~~~~~l~~~~~d~~ 259 (409) .+...++....+.. .....+..+-..++ +..+.+.... -...+. -..++++. -+++.++.++.... -.. T Consensus 227 ~v~~liDa~~~~~s~~~~~~~~~a~p~~~i~--G~~~~~~~~~-~~~~~~---~~~~~i~~~~~~~~~~~q~~~~~-~~~ 299 (479) T protein:vir:99 227 PLVTVAKAIDKTGLDILLVQHHQSFQIRWAT--GLMLPEGANA-DQEKMR---FAQESMLISQNEKASFGAIPAAP-LDG 299 (479) T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhhc--CCCccccccc-chhccc---cccccceeecCCCceEEEecccc-hHH Confidence 76666654443321 12333333322222 1111111100 000111 11223433 35667777665422 233 Q ss_pred HHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHH----------HHHHHHHHHHHHHHHHHHHHHhhcChhhcccc Q lcl|Aclame:pro 260 IVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELN----------RFYLQHTLLPIVKQYEEEFNRKLLTKTDREKN 329 (409) Q Consensus 260 ~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~----------~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~ 329 (409) +.+..+....+|+.+=++|++.+|...+++........ ...+..++.-.++.+... ......... T Consensus 300 ~~~~l~~~i~~i~~~t~~p~~~~g~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~al~~~~~l~~~~-----~~~~~~~~~ 374 (479) T protein:vir:99 300 LLNAYKESLLEFLALAQLPPHIAGQIVNVAADALAAGTRQTMQKLFEKQATWKASHNQTMRLVNKI-----EGRTEEATD 374 (479) T ss_pred HHHHHHHHHHHHhccCCCCHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCccccc Confidence 66777788889999999999998753322211111111 111111222222221111 111111122 Q ss_pred ceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh-CCCCCCCCCEEe-----------ecccccchhccccccc Q lcl|Aclame:pro 330 RYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE-DLPPVEGGDKPL-----------ISGDLYPIDTPLELRK 397 (409) Q Consensus 330 ~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~-g~~p~~~gd~~~-----------~~~n~~~~~~~~~~~~ 397 (409) ..+.+.+......+..+.++.+.+++.+|+++...+.+++ |+.+.+ -+... ....+..-..+.+.+. T Consensus 375 ~~i~~~w~~~~~~s~~~~ad~~~kl~~ag~is~et~l~~l~gv~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (479) T protein:vir:99 375 LDFTITWQDVTIQSLAQFADAWAKMVESLKIPAEGVWDMIPNLDQST-VNGWKEIYDREGDFGKYMRKLQNGPDPAEQRG 453 (479) T ss_pred eeeeEEecCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHhcccCcccccC Confidence 3455555666667888999999999999999888888776 775421 00000 0000000000000001 Q ss_pred ccCCCC----CCCCCC Q lcl|Aclame:pro 398 SLKGGD----KNVNES 409 (409) Q Consensus 398 ~~~gg~----~n~~~~ 409 (409) ...|.+ ..++.| T Consensus 454 ~~~~~~~~~~~~~~~~ 469 (479) T protein:vir:99 454 GPNGATNMQQANNKTG 469 (479) T ss_pred CCCCCCCCCCCCCCCc Confidence 111111 111111 No 184 >protein:vir:79703 Length: 505 # NCBI annotation: minor structural protein gp61 # Family: family:all:898 # MgeID: mge:1873 # MgeName: LL-H # Cross-refs: genbank:acc:YP_001285880;genbank:gi:148750838;genbank:GeneID:5220405 Probab=98.09 E-value=4.9e-06 Score=49.68 Aligned_cols=384 Identities=15% Similarity=0.093 Sum_probs=170.7 Q ss_pred Ccchhhhhhhhhhhhcccc----cCcccccc----------------ccccc-CCCCcc----cc----chhHHhhhHHH Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWI----DQSASKLY----------------DFSPW-KNKSFW----GV----INNTLETNETI 51 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~----~~~~~~~~----------------~~~~~-~~~~~~----~v----~~~~~~~~~~v 51 (409) |+.+ .|+|+-+.+... .+...... .|-.+ .+...+ .+ -.+........ T Consensus 1 m~~~---~~ik~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~~~~~i~~~~~~Y~g~~~~l~~~~~~~~~~~~~~~slnl~ 77 (505) T protein:vir:79 1 MAFW---DTLKNLFRKGSAAVGMTKSLGQIIDDPRINLPADEVERIARDKRYYMDDFKQVTHKNSYGDTQKHELQSVNVT 77 (505) T ss_pred CchH---HHHHHHHHHhhhhhcchhhhhhhhcccCCCCCHHHHHHHHHHHHHhcCCCccccccccCCCccccceeecchH Confidence 8774 333332211100 00000000 00000 000000 00 00111222233 Q ss_pred HHHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCC Q lcl|Aclame:pro 52 FSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNP 131 (409) Q Consensus 52 ~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p 131 (409) ..+++..|+-+..=|..+.-.++.....+..++. .-.+.......+.+.+..|.+++.+..+. |. ..+..++| T Consensus 78 ~~i~~~~A~ll~~e~~~i~~~d~~~~e~l~~i~~-----~n~f~~~~~~~~e~a~a~G~~~~k~~~D~-~~-~~i~~v~a 150 (505) T protein:vir:79 78 KLASAKLASLIFNEQCQVTVSDETANDFLDDVFQ-----QNDFYTTFEEKLEEWIALGSGCVRPYVDS-GK-IKLAWATA 150 (505) T ss_pred HHHHHHHHhhhcCCCceeecCChHHHHHHHHHHH-----hccHHHHHHHHHHHHhhcCCeEEEEEEeC-Cc-eEEEEEcC Confidence 4455566665544443432222221122222222 12244555666778888999888777663 43 34556667 Q ss_pred cceEEEEcCCccee-----------------EEE------------------EEcC----CCeEEE-------------- Q lcl|Aclame:pro 132 DVVEMLIENQSREL-----------------YYS------------------IHAA----TGNKLI-------------- 158 (409) Q Consensus 132 ~~v~~~~~~~~~~~-----------------~~~------------------~~~~----~g~~~~-------------- 158 (409) ..+-+...+.+... +|. |... .|..+. T Consensus 151 d~~~P~~~d~~~~~~~a~~~~~~~~~~~~~~~yt~lE~h~~~~~~~~I~n~ly~~~~~~~lG~~v~l~~~~~~~~l~~~~ 230 (505) T protein:vir:79 151 DQVYPLQADTNQVNELAIASRTTEVENHRTIYYTLLEFHQWDHGDYVITNELYRSEAAETVGINVPLNSLEQYEGLEPQV 230 (505) T ss_pred CeeEEEEEcCCCeEEEEEEEEEEEecCCcceEEEEEEEEEecCceEEEEEEEEecCCCCccCcccchhhcccccccCcce Confidence 66665422222110 110 0000 011111 Q ss_pred ----EccceEEEecCcCcc----cccccccHHHHHHHHHHHHHHHHHHHHHhcCCCceeE------EecCCcCCHHHHHH Q lcl|Aclame:pro 159 ----VHNMDMLHFKHIVAS----NMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPDSFM------LKYGSNVSTEKRQQ 224 (409) Q Consensus 159 ----~~~~~vih~~~~~~~----~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 224 (409) ++.-.+.||+.+.+. ..+.|+|.+..+...+.-.........+.+..+-..+ ++....-..+.... T Consensus 231 ~~~g~~~p~f~~~~~~~~N~~~~~splG~S~~~~~~~~id~lD~~~s~~~~e~~~g~~~i~v~~~~l~~~~~~~~~~~~~ 310 (505) T protein:vir:79 231 KITGLKHPLFAFYRNKGANNKNFTSPMGMSLIDNSYTVIDAINRTHDQFVDEVKKGQRRLIVPAEWLKTGSSYGGQASET 310 (505) T ss_pred eecCCCcceEEEecCCcccccccCCccCCchhhhhHHHHHHHHHHHHHHHHHHHhcccceeechHHhcccCCCCcccccc Confidence 011123456543222 3457999999999887655443332222222221111 11111111000000 Q ss_pred HHHHHHH---HhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH-HHHH Q lcl|Aclame:pro 225 VLEDFKQ---YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-NRFY 300 (409) Q Consensus 225 ~~~~~~~---~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-~~~~ 300 (409) -...|.. .+.. +..-+++..++.++....+.++.+..+...++|+...|+++..++...++..+..|-. ...- T Consensus 311 ~~~~fd~~~~~y~~---~~~~~~~~~i~~~~~~ir~e~~~~~l~~~l~~i~~~~g~s~~~~~~~~~~~~TAtei~s~~~~ 387 (505) T protein:vir:79 311 HPPMFDPDETVYQA---MYGDASEVGFHDATSPIRVADYQATMDFFLREFENQTGLSQGTFTTSPSGIQTATEVVTNNSQ 387 (505) T ss_pred cccCCCccceeeee---ccCCCCCCceEEecccCCHHHHHHHHHHHHHHHHHHhCCChhhcCCCccccchHHHHHHHHhH Confidence 0000100 0100 0011233457788887788889999999999999999999999987665543222211 1111 Q ss_pred HHHHHHHHHHHHHHHHHHh-----------hcChh------hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHH Q lcl|Aclame:pro 301 LQHTLLPIVKQYEEEFNRK-----------LLTKT------DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTIN 363 (409) Q Consensus 301 ~~~~l~P~~~~ie~~ln~~-----------ll~~~------~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~N 363 (409) .-.++.-..+.++.+|... .+... .......+.+++++-...|..+.++...+++.+|+|+.- T Consensus 388 l~~t~~~~~~~~~~al~~li~~i~~~~~~~~~~~~g~~~~~~~~~~~~i~v~f~d~i~~d~~~~~~~~~~~v~~Gi~s~e 467 (505) T protein:vir:79 388 TYQTRSSYITQVEKTIKALTYAILELASVPSFYADGQARWTGDVDSLDITINFNDGVFVDQESKRAADLQAVQAQVMPKK 467 (505) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCceeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCCHH Confidence 2223333333334333321 11110 011234577888888888999999999999999999999 Q ss_pred HHHHHh-CCCCCCCCCEEeecccccchhc---ccccccccCCCC Q lcl|Aclame:pro 364 DIREWE-DLPPVEGGDKPLISGDLYPIDT---PLELRKSLKGGD 403 (409) Q Consensus 364 E~R~~~-g~~p~~~gd~~~~~~n~~~~~~---~~~~~~~~~gg~ 403 (409) .++... |++.- ..++- +..+.. ...++....||| T Consensus 468 ~~l~~~~~~~ee-ea~~e-----l~ri~~E~~~~~p~~~~~gg~ 505 (505) T protein:vir:79 468 QFLMRNYGLDEE-EADEW-----LAQIDAENSTAEPEFNQFGGD 505 (505) T ss_pred HHHHhcCCCChH-HHHHH-----HHHHHHhccccCCCchhccCC Confidence 888654 54331 11111 111100 001122344555 No 185 >protein:vir:95806 Length: 440 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1578 # MgeName: SMP # Cross-refs: genbank:acc:YP_950583;genbank:gi:119953778;genbank:GeneID:5076876 Probab=98.06 E-value=5.6e-06 Score=49.38 Aligned_cols=391 Identities=9% Similarity=-0.022 Sum_probs=166.2 Q ss_pred Ccchhhhhhhhh--hhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccc Q lcl|Aclame:pro 1 MAKENIVTRIKK--KLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNT 78 (409) Q Consensus 1 M~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~ 78 (409) |...-+-.|.+. ++.+-+.+... ........ ...+. .+.-..+......|+..+.-+-+-|+.+...++. .. T Consensus 1 ~~~~~~~~~~~r~~~l~~yy~g~~~-~~~~~~~~-~~~~~---~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~~~~-~~ 74 (440) T protein:vir:95 1 MLAAFLGSQKQRLAILASYAQGDNF-SILSGHRR-LDDEK---ADYRVRHKWGGYISSFATGYVIGNPVSIGVMEGG-SA 74 (440) T ss_pred ChhhHHHHHHHHHHHHHHHhccCCc-cccccccc-ccccC---CcceeecchHHHHHHhhhhheeccCceEeeCCCc-cH Confidence 333211111111 01111111111 00000000 00000 0111233455556666666665556665332221 12 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc--eeE--EEEEcCCC Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR--ELY--YSIHAATG 154 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~--~~~--~~~~~~~g 154 (409) +....|.. -............+..+.+.+|.+|..+..+..|.+ .+..++|..+.+..++... ... +.+..... T Consensus 75 ~~~~~l~~-~~~~n~~~~~~~~~~~~~~~~G~a~~~~~~d~~~~~-~i~~~~p~~~~~~~d~~~~~~~~~~i~~~~~~~~ 152 (440) T protein:vir:95 75 DQLSTIKD-IEWQNDINALNSDLAFDASVYGRAYEYHFRDKDKVD-RVVLISPLEMFVIRDLTVEQNIIAAVHLPIYADK 152 (440) T ss_pred HHHHHHHH-HHHhcCHhHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEEEEEEecCc Confidence 22222221 111113455566777899999999999998888875 5777899999988876542 211 11112222 Q ss_pred eEE-EEccceEEEecCc--------------C-----c----ccccccccHHHHHHHHHHHHHHH---HHHHHHhcCCCc Q lcl|Aclame:pro 155 NKL-IVHNMDMLHFKHI--------------V-----A----SNMVQGISPIDVLKNTTDFDNAV---RTFNLTEMQKPD 207 (409) Q Consensus 155 ~~~-~~~~~~vih~~~~--------------~-----~----~~~~~G~sp~~~~~~~i~~~~~~---~~~~~~~~~~~~ 207 (409) ... .+.++.++++... + | .+...|.|-++.+...+.....+ .......++.+- T Consensus 153 ~~~~vyt~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~lida~~~~~s~~~~~~~~~~~~~ 232 (440) T protein:vir:95 153 VNMTVYTKDKVITYKPYSNNSVRLVVDDVKKHSYNDVPVVEWWNNRFRMGDYESEISLIDAYDAGQSDTANYMSDLNDAM 232 (440) T ss_pred eEEEEEeCCeEEEEEEecCCccceeecceeeccCceeeEEEeeCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhcce Confidence 222 2344444443210 0 0 11123666666555555433322 222233444332 Q ss_pred eeEEe--cCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc Q lcl|Aclame:pro 208 SFMLK--YGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR 285 (409) Q Consensus 208 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~ 285 (409) ..+.- .+...++++...+++.-.-...........+++.+...++.......+....+...+.|+..-++|..-.+.. T Consensus 233 ~v~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~ 312 (440) T protein:vir:95 233 LLVKGDLDGIKLSPEDAAKMKDANMLFLKTGISTTGQQTTADASYIYKQYDVNGTEAYKNRLANDIHRFSRIPNLDDDRF 312 (440) T ss_pred eeeecccccCCCCccchhhhhhccceecccccccccCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccccccc Confidence 22211 1133455555555432211111111111123333444444443445566778888899999999987544322 Q ss_pred c-cCccccHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHH Q lcl|Aclame:pro 286 S-NTNFAKNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKA 354 (409) Q Consensus 286 ~-~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~ 354 (409) . +.++...+. .....+...+...++.+...++..--. ......+.+.+..-...+..+.++.+.++ T Consensus 313 ~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~---~~~~~~v~i~f~~~~p~~~~~~ad~~~kl 389 (440) T protein:vir:95 313 NSTSSGIALLYKMIGLEQVRKDKETYFTKALRRRYELISNIHKAINGP---VIEANKLTFTFHPNIPQDVWTEIKAYIEA 389 (440) T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---ccccccceEEeCCCCCCCHHHHHHHHHHH Confidence 1 111111111 112223333333333333333321111 11223455666677788899999999988 Q ss_pred HhcCCcCHHHHHHHhCCCCCCCCCEE-eecccccchhcccccc--cccCCCCCCCC Q lcl|Aclame:pro 355 VRSGYYTINDIREWEDLPPVEGGDKP-LISGDLYPIDTPLELR--KSLKGGDKNVN 407 (409) Q Consensus 355 ~~~g~~T~NE~R~~~g~~p~~~gd~~-~~~~n~~~~~~~~~~~--~~~~gg~~n~~ 407 (409) .|+++.--+.++++.-..+ +++ .+-.- ..-......+ ....+++.|.+ T Consensus 390 --~g~iS~et~~~~l~~~d~~--~E~~ri~~E-~~~~~~~~~~~~~~~~~~~~~~e 440 (440) T protein:vir:95 390 --GGEISQETLMENASFTDYK--TEHSRILKQ-GGSSDLEIGQIVGDADVGQADTE 440 (440) T ss_pred --hccCcHHHHHHhCCCCCcH--HHHHHHHHH-HHHhhhhHHhhccCCCCCCcCCC Confidence 5788887777777553211 000 00000 0000000000 01111222222 No 186 >protein:vir:9751 Length: 422 # NCBI annotation: putative structural protein # Family: family:all:524 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795513;genbank:gi:28876291;genbank:GeneID:1257832 Probab=98.06 E-value=5.6e-06 Score=49.38 Aligned_cols=355 Identities=10% Similarity=0.073 Sum_probs=160.3 Q ss_pred Ccchhhhhhhhhhhh-----cccccCcccccccccccCCCCccccc-hhHH-----hhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENIVTRIKKKLI-----DNWIDQSASKLYDFSPWKNKSFWGVI-NNTL-----ETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~~~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~-----~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |....+...+..... ..+..... . ..+.+.. ++.+ .-..+..-+|+.+|+.+.=-.|. T Consensus 4 ~~i~~L~~~~~~~~~r~~~~~~yy~g~~----~------~~~~~~~~p~~~~~~~~~v~nw~~~~Vd~~a~rl~~~Gf~- 72 (422) T protein:vir:97 4 MGMGYLRRKLALFKTGVDKRYRYYAMDD----R------DDTRSIVMPNNVREMYRSVLEWTAKGVDSLADRIIFREFT- 72 (422) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC----C------hhhcCccccHHHHHHHHhhcchhHHHHHHHHhccccceee- Confidence 555555444322211 11111100 0 0011111 1111 11123344555555432222222 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC-CCceeEEEeeCCcceEEEEcCCcceeE-- Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI-YHQPSKLFLLNPDVVEMLIENQSRELY-- 146 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~-~G~~~~l~~l~p~~v~~~~~~~~~~~~-- 146 (409) .. +..+...+. . |. .......+..+.+.+|.+|+.+..+. .|.| .+.+++|..+...+|+...... T Consensus 73 --~~---d~~l~~~w~-~-N~---ld~~~~~~~~~al~~G~sf~~v~~~~~~~~p-~i~~~sp~~~~~i~D~~~~~~~~a 141 (422) T protein:vir:97 73 --ND---DFNAWEIFK-A-NN---PDIFFDTAIQSALIASCCFVYIMPGAEDGLP-KMQVIEASKATGILDPTTFLLTEG 141 (422) T ss_pred --CC---chhHHHHHH-h-cC---hHHHHHHHHHHHHHhcceeEEEeeCCCCCee-EEEEechhhEEEEEeCCCCcceee Confidence 11 123443332 2 32 23445567788999999999998775 4554 6888999999888776533321 Q ss_pred --EEEEcCCCeE--EE-Eccc---------------------eEEEecCcCcccccccccHH-HHHHHHHHHHH---HHH Q lcl|Aclame:pro 147 --YSIHAATGNK--LI-VHNM---------------------DMLHFKHIVASNMVQGISPI-DVLKNTTDFDN---AVR 196 (409) Q Consensus 147 --~~~~~~~g~~--~~-~~~~---------------------~vih~~~~~~~~~~~G~sp~-~~~~~~i~~~~---~~~ 196 (409) +......|.. .. ++.. -|++|.+.......+|.|.+ +.+...++... .-. T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~~~~G~s~I~e~v~~l~da~~r~~~~~ 221 (422) T protein:vir:97 142 YAILESDSNGNPTLEAYFTDKDIWYYPKKGKPYNIKNPTGHPLLVPIIHRPDAVRPFGRSRITKAGMYHQKAAKRTLERA 221 (422) T ss_pred EEEEEecCCCcEEEEEEEcCceEEEEcCCCccccccCCCCCcceEEecccCCCccccCccccchhHHHHHHHHHHHHHHH Confidence 1111222221 11 1111 24455544344556787754 33333333222 222 Q ss_pred HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-----CCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 197 TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERV 271 (409) Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~I 271 (409) .....+++.+-..++-.+ .+....+. |+.. .++++.++ ++.++.++..+.-+ .+++..+....++ T Consensus 222 ~~~~e~~a~pqr~i~G~d--~d~~~~~~----~~~~---~~~i~~~~~de~~~~~~v~q~~~~~l~-~~~~~l~~~~~~~ 291 (422) T protein:vir:97 222 EVTAEFYSFPQKYVLGMD--PDAKPMEK----WRAT---VSTLLEISKDEDGDKPTVGQFTTASMA-PFMEHLKMYASLF 291 (422) T ss_pred HHHHHHhcchhhhhcccC--cccccCch----hhhh---hhhhhccCCCCCCCcceeeecCCCChh-HHHHHHHHHHHHH Confidence 223344444433332211 11111222 2221 12444443 23566655543322 4889999999999 Q ss_pred HHHhcCChhhcCCccc--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcC-hh--h--ccccceEEecchhhhh Q lcl|Aclame:pro 272 ANVFQLPSIFLNARSN--TNFAKNEELNRFYLQHTLLPIVKQYEEEFNRK---LLT-KT--D--REKNRYFKFNVKSYLR 341 (409) Q Consensus 272 a~~fgvp~~~l~~~~~--~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~~---ll~-~~--~--~~~~~~~~~d~~~l~~ 341 (409) ++.=++|++.||.... ++......+...+...+ .-..+.+.+.+.+- .+. .. . ......+.+.+..... T Consensus 292 a~~s~lP~~~lg~~~~NpsSa~Ai~a~~~~L~~ka-~~k~~~fg~~l~~~~rla~~~~~~~~~~~~~~~~~~~~w~p~~~ 370 (422) T protein:vir:97 292 AGGSGLTLDDLGFPSDNPSSVESIKAAHENLRAAG-RKAQRSFSSGFLNVAYIAVCLRDEFPYLRNQFMDTVIKWEPLFE 370 (422) T ss_pred hcccCCCHHHhccccCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccchhhccceEEEccCCC Confidence 9999999999987543 11222232332222221 11222222222211 110 00 0 0111223444444333 Q ss_pred hh---HHHHHHHHHHHHhc--CCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccccccccCC Q lcl|Aclame:pro 342 AD---SATQAEVYFKAVRS--GYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLELRKSLKG 401 (409) Q Consensus 342 ~d---~~~~~~~~~~~~~~--g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~g 401 (409) .+ ....++++.|++.+ |++..+-+++++|+...+ . ....++. ....| T Consensus 371 ~~~~s~a~~aDa~~Kl~~a~~~~~~~~~~~~~lg~~~~~---~-----~~~~~~~-----~~~d~ 422 (422) T protein:vir:97 371 ADANMLTLVGDGAIKLNQAIPGFMDADVIRDLTGVKGAD---K-----PIPAITE-----VTTDG 422 (422) T ss_pred CChHHHHHHHHHHHHHHhhccccccHHHHHHHcCCCchh---H-----HHHHHHh-----hhccC Confidence 34 56667778888888 688889999999995421 0 0001111 01111 No 187 >protein:vir:3964 Length: 453 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:83 # MgeName: ul36 # Cross-refs: genbank:acc:NP_663672;genbank:gi:21716109;genbank:GeneID:951201 Probab=98.05 E-value=6e-06 Score=49.21 Aligned_cols=383 Identities=12% Similarity=0.059 Sum_probs=164.0 Q ss_pred Ccch---hhh-------hhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE---NIV-------TRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~---~~~-------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |... +++ .|... +.+-+.+.. ++..-..........+ +..+.....|+..+.-+-.-|+.+. T Consensus 17 ~~~~~l~~~i~~~~~~~~r~~~-~~~yy~g~~-----~i~~~~~~~~~~~~~k--i~~n~~~~ivd~~~~~l~g~~~~~~ 88 (453) T protein:vir:39 17 ITNEVVTKFMEKHRLEVARYEY-LKNMYRGIM-----AIDAEPTKDLWKPDNR--LTVNFTKYIVDTFTGYFNGIPVKKS 88 (453) T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHhhccC-----chhcCCCccccCccce--eecchHHHHHHHHhhhhcccCceec Confidence 1111 111 11100 001111110 1111000000000111 2235566677777777767777664 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc-cee-E-E Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS-REL-Y-Y 147 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~-~~~-~-~ 147 (409) ..++.....+..++.. | ........+..+.+.+|.||..+.++.+|.+ .+..++|..+.+..++.. ... . . T Consensus 89 ~~d~~~~~~l~~i~~~--N---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~i 162 (453) T protein:vir:39 89 HSDKETLSKLQEFDNL--N---DMEDEESELAKMACIYGRAFELLYQNEETQT-NVIYNTPENMFMVYDDTIKQEPLFAV 162 (453) T ss_pred cCChHHHHHHHHHHHh--c---ChhHHHHHHHHHHhhcCeEEEEEEecCCCce-EEEEEcccceEEEecCCCCCeEEEEE Confidence 4433322333333332 2 3455677788899999999999999988875 566788888888776532 111 1 1 Q ss_pred EEEcCCCe--EE-EEccceEEEecCcC-----------c---------ccccccccHHHHHHHHHHHHHHHH---HHHHH Q lcl|Aclame:pro 148 SIHAATGN--KL-IVHNMDMLHFKHIV-----------A---------SNMVQGISPIDVLKNTTDFDNAVR---TFNLT 201 (409) Q Consensus 148 ~~~~~~g~--~~-~~~~~~vih~~~~~-----------~---------~~~~~G~sp~~~~~~~i~~~~~~~---~~~~~ 201 (409) .+....+. .. .+.++.+.++.... + .+...|.|-++.+...++....+. ..... T Consensus 163 r~~~~~~~~~~~~~yt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~~~~~s~~~~~~~ 242 (453) T protein:vir:39 163 RYGYDDDYKLYGEVYTKETTYALNGTMGFYNMTEQAPNPFDDLPVVEFYFNEERMSIFESVISLVNAFNKAISEKANDVD 242 (453) T ss_pred EEEEeCCeEEEEEEEeCCeEEEEEecCCceeeecccccCCCceeEEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHH Confidence 11111111 11 12333333332110 0 012246676766555554333221 11233 Q ss_pred hcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhh Q lcl|Aclame:pro 202 EMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIF 281 (409) Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~ 281 (409) .+..+ . .+..+..++++....++..- ...-.+ ....+++.++..++.......+.+..+...+.|+..-++|..- T Consensus 243 ~~~~p-~-~~~~g~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~lt~~~~~~~~~~~~~~l~~~I~~~s~~p~~~ 317 (453) T protein:vir:39 243 YFSDQ-Y-LTFLGAAVEEEDLKNIRSNR--VINYYG-ESSEAKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMVANIS 317 (453) T ss_pred HhhCc-e-eeeecCCCCchhhhhhhhcc--eeeecC-CCCCCCCCceeEEeecCCHHHHHHHHHHHHHHHHHHhCCcccc Confidence 33333 2 22334445555554433210 000000 0011233333334443445556677778888888888887543 Q ss_pred cCCcccCccccHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHH Q lcl|Aclame:pro 282 LNARSNTNFAKNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVY 351 (409) Q Consensus 282 l~~~~~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~ 351 (409) .....+.+....+. .....+...+...++.+...++..- .......+.+.+..-...|..+.++.+ T Consensus 318 ~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~----~~~~~~~i~v~f~~~~p~~~~~~a~~~ 393 (453) T protein:vir:39 318 DESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLYCELSTNVS----NKEAWKDIEYTFTRNEPKDIKEQAETA 393 (453) T ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CccccccceEEeCCCCCcCHHHHHHHH Confidence 32221111111111 1222333344444443333322211 011112344555566777889999998 Q ss_pred HHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccch-hcccccccccCCC----CCCCCC Q lcl|Aclame:pro 352 FKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPI-DTPLELRKSLKGG----DKNVNE 408 (409) Q Consensus 352 ~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~-~~~~~~~~~~~gg----~~n~~~ 408 (409) .++ +|+++..-+.+.++.-+-+..+.-.+..--... ..........+|. +.+++| T Consensus 394 ~kl--~g~is~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~e 453 (453) T protein:vir:39 394 NIL--MGITSQETALSVISVIPDVQAEMEKIKKEEASTAIFDKDKQPSEKGTDTVVPETNEE 453 (453) T ss_pred HHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCcCCC Confidence 887 578998888888865332111100000000000 0000001111111 112222 No 188 >protein:vir:9871 Length: 429 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:177 # MgeName: 315.5 # Cross-refs: genbank:acc:NP_795633;genbank:gi:28876408;genbank:GeneID:1257942 Probab=98.02 E-value=6.8e-06 Score=48.90 Aligned_cols=368 Identities=11% Similarity=0.044 Sum_probs=161.6 Q ss_pred Ccchhh---hhhhhhh---h--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeec Q lcl|Aclame:pro 1 MAKENI---VTRIKKK---L--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYED 72 (409) Q Consensus 1 M~~~~~---~~r~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~ 72 (409) |-..-| +++.... . ...+.... .++..-...... -...-..++....+|+..+.-+-.-|+.+... T Consensus 1 l~~~~l~~~i~~~~~~~~r~~~l~~yy~g~----~~il~~~~~~~~--~~~~ki~~n~~~~ivd~~~~~l~g~~~~~~~~ 74 (429) T protein:vir:98 1 MTKDLLSELIQKHRSFNLSYSAYKQLYEGD----HAILQQKQKEQY--KPDNRLVVNFAKYIVDTFNGYFIGVPVQTSHE 74 (429) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccc----cccccccccccC--CCcceeecchHHHHHHHHhhhhcccCceeecC Confidence 433211 1111110 0 00111110 011000000000 01112335566778888888777778776544 Q ss_pred cccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc--eeE--EE Q lcl|Aclame:pro 73 YKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR--ELY--YS 148 (409) Q Consensus 73 ~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~--~~~--~~ 148 (409) ++.....+..++. . | ........+..+++.+|.+|..+..+.+|.+ .+..++|..+.+..++... ... +. T Consensus 75 ~~~~~~~l~~~~~-~-n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~~~~~~p~~~~~v~dd~~~~~~~~~i~~ 148 (429) T protein:vir:98 75 NKQVSNYLELLDG-Y-N---DQDDNNAELSKICSIYGHGYELVFNDENAEA-GITYLTPLEAFIVYDDSIRQKPLFAVRY 148 (429) T ss_pred ChHHHHHHHHHHh-h-c---CHhHHHHHHHHHHhhcCeEEEEEEecCCCcE-EEEEEcccceEEEEeCCCCCceEEEEEE Confidence 3332233333322 2 2 3455667788899999999999999988875 5777888888877665321 111 11 Q ss_pred EEcCCCeE-EEEc-cce-------------------------EEEecCcCcccccccccHHHHHHHHHHHHHHHH---HH Q lcl|Aclame:pro 149 IHAATGNK-LIVH-NMD-------------------------MLHFKHIVASNMVQGISPIDVLKNTTDFDNAVR---TF 198 (409) Q Consensus 149 ~~~~~g~~-~~~~-~~~-------------------------vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~---~~ 198 (409) +...++.. ..+. .+. |+++++ ...|.|-++.+...++....+. .. T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n-----~~~g~sd~e~v~~liD~~d~~~s~~~~ 223 (429) T protein:vir:98 149 FYNKGGVLEGSYSDASNITYFKDGEKGIEIGESEPHPFDGVPMIEYVE-----NEERQSLLASVVTLINAFNKAISEKAN 223 (429) T ss_pred EEecCceEEEEEEeCceEEEEEecCCceEecccccccCCccceEEecC-----CCCCCCcHHHHHHHHHHHHHHHHHHHH Confidence 11111111 1111 111 222222 2347776666555554433322 21 Q ss_pred HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC----CCceeeeccCChhhHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 199 NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE----PGVEIEPLPKKYVSEDIVASENLTRERVANV 274 (409) Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~ 274 (409) ....++.+-. + ..+...+++....++. ++++.++ .+.+...++.......+....+...+.|+.. T Consensus 224 ~~~~~~~p~~-~-i~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~ 292 (429) T protein:vir:98 224 DVEYFADAYL-K-ILGAELDDETLKSLRD---------TRIINLKDTDAQQLTVEFLQKPDADATQEHLLDRLENLIFRT 292 (429) T ss_pred HHHHhcCcee-e-eecCCCCcchhhhHhh---------CceeeccCCCCCCcceeEEeecCCHHHHHHHHHHHHHHHHHH Confidence 2333333322 2 2333444433332211 1233332 1223444444444444566778889999999 Q ss_pred hcCChhhcCCcccCccccHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhH Q lcl|Aclame:pro 275 FQLPSIFLNARSNTNFAKNEEL----------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADS 344 (409) Q Consensus 275 fgvp~~~l~~~~~~~~~~~e~~----------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~ 344 (409) -++|..-.....+.+....+.+ ....+...+.-.++.+...++..- .......+.+.+......|. T Consensus 293 s~~p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~----~~~d~~~i~v~f~~~~p~~~ 368 (429) T protein:vir:98 293 AMVANISDESFGTASGIALRYRLQAMDNLAKTKERKFMSGMNRRYKLIASYPTSKI----GPKDWIGIKYKFTRNLPANL 368 (429) T ss_pred hCccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----CccccccceEEeCCCCCcCH Confidence 9988543322211111111111 111122222222222222221110 01111224555567778889 Q ss_pred HHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccch--hcccccccccCC--CCCCCCCC Q lcl|Aclame:pro 345 ATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPI--DTPLELRKSLKG--GDKNVNES 409 (409) Q Consensus 345 ~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~--~~~~~~~~~~~g--g~~n~~~~ 409 (409) .+.++.+.++ +|+++..-+.++++.-+-|..+ +..+ +.....+.+..+ +++++++- T Consensus 369 ~~~a~~~~kl--~g~is~et~~~~l~~v~d~~~E-------~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 428 (429) T protein:vir:98 369 LEESQIAGNL--AGIVSEETQVGVLSIVENPQKE-------IERKNSDKSTLISRQAGGLNGQNTTTIL 428 (429) T ss_pred HHHHHHHHHH--hccCchHHHHHhCCCCCCHHHH-------HHHHHHHHHHHHHHHHhhhcCCCCCCCC Confidence 9999998887 6789887788888653321111 0011 000000111111 22222222 No 189 >protein:vir:78537 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491582;genbank:gi:157786405;genbank:GeneID:5625689 Probab=98.02 E-value=6.9e-06 Score=48.88 Aligned_cols=387 Identities=11% Similarity=0.048 Sum_probs=162.1 Q ss_pred Ccch--------hhhhhhhhhh--hccc-ccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKE--------NIVTRIKKKL--IDNW-IDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~--------~~~~r~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) |.-. +.+.+...+. ...+ -+... +-......+... .+.-........+|+..++-+--..|.+ T Consensus 1 ~~t~~d~i~~L~~~~~~~~~r~~~~~~Yy~G~~~--i~~~~~~~~~~~----~~~~~~~n~~~~ivd~~~~~l~~~g~~~ 74 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRR--LKTIGIGAPPEL----AYLDVQPGWVATYLRTLSDRLDIEGFRI 74 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--chhcccccchhh----hhhhhhcchHHHHHHHHHhhhccCceec Confidence 3321 1111111111 1111 11110 000000000000 0111123344556666666554334443 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec------CCCceeEEEeeCCcceEEEEcCCc- Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD------IYHQPSKLFLLNPDVVEMLIENQS- 142 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~------~~G~~~~l~~l~p~~v~~~~~~~~- 142 (409) - +++.....+..++.. | ........+..+++.+|.||..+.+. ..|.+ .+.+++|..+.+..|+.. T Consensus 75 ~-~d~~~~~~l~~i~~~--N---~~~~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~~~~-~i~~~~p~~~~~i~D~~~~ 147 (480) T protein:vir:78 75 S-EDSEGLEELWNWWQA--N---DLDEESVLGHDDSLTFGRAYITVSHPDVESGDPAGIP-LIRVESPLYMYAELDPRNT 147 (480) T ss_pred C-CCchhHHHHHHHHHh--c---CHHHHHHHHHHHHhhcCceEEEeecCccccCCCCCee-EEEEEcccceEEEEcCCCc Confidence 2 222222334343331 2 24556677888999999999887653 34443 577888888888876542 Q ss_pred -ceeE----EEEEcCCCe---EEEEccc-----------------------------eEEEecCcCcccccccccHHHH- Q lcl|Aclame:pro 143 -RELY----YSIHAATGN---KLIVHNM-----------------------------DMLHFKHIVASNMVQGISPIDV- 184 (409) Q Consensus 143 -~~~~----~~~~~~~g~---~~~~~~~-----------------------------~vih~~~~~~~~~~~G~sp~~~- 184 (409) .... |.-....+. ...+.++ -|+||.+.......+|.|-++- T Consensus 148 ~~~~~~i~~~~~~d~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~sdi~~~ 227 (480) T protein:vir:78 148 RRVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPE 227 (480) T ss_pred cceEEEEEEEEeecCCcceEEEEEEeCCeEEEEEecCCCcccccccccccccCCCCcceEEeecccccCCccCccchhHH Confidence 2211 111111111 0112222 3344544333344567765542 Q ss_pred HHHHH---HHHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHH Q lcl|Aclame:pro 185 LKNTT---DFDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDI 260 (409) Q Consensus 185 ~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~ 260 (409) +...+ ....+-.......+..+-..+ .+..+.+...+.-...|.. ..++++.++ ++.+|.++.....+ .+ T Consensus 228 i~~l~Da~~~~~s~~~~~~~~~a~p~~~i--~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~ 301 (480) T protein:vir:78 228 LRKVTDAASRTLMNLQSASQILGTPLRVI--SGVTTDELTNDGENTTLDI---YYGRILTLASEAAKISEFKAAELR-NF 301 (480) T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhhhh--hCCCccccccccccchhhh---hhhhhccCCCCCceEEecCccCHH-HH Confidence 33333 322222222233333332222 1222211111111111221 123344443 45677776654322 37 Q ss_pred HHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHH----HHHH------hhcChhhccccc Q lcl|Aclame:pro 261 VASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEE----EFNR------KLLTKTDREKNR 330 (409) Q Consensus 261 ~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~----~ln~------~ll~~~~~~~~~ 330 (409) .+..+....+++.+-++|+..+++... +.++.++. .+....+.-.+...+. .|.+ .+.......... T Consensus 302 ~~~l~~~i~~~~~~~~~p~~~fg~~~~-n~~Sg~Al--~~~~~~l~~k~~~~~~~f~~~l~~~~rl~~~~~~~~~~~~~~ 378 (480) T protein:vir:78 302 AEEMEVFRKEAASITGLPPQYLSSSSE-NPASAEAI--IATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYT 378 (480) T ss_pred HHHHHHHHHHHhcccCCCHHHhccccC-chhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccce Confidence 788888899999999999999976432 21222211 1111122222222221 1111 111111112233 Q ss_pred eEEecchhhhhhhHHHHHHHHHHHHhcC--CcCHHHHHHHhCCCCCC--CCCEEeecccccch-------hccccccccc Q lcl|Aclame:pro 331 YFKFNVKSYLRADSATQAEVYFKAVRSG--YYTINDIREWEDLPPVE--GGDKPLISGDLYPI-------DTPLELRKSL 399 (409) Q Consensus 331 ~~~~d~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~--~gd~~~~~~n~~~~-------~~~~~~~~~~ 399 (409) .+++.+......+..+.+..+.+++.+| +++..-+++.+|+.+-+ ...+..-.....++ ....+.+... T Consensus 379 ~i~v~w~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (480) T protein:vir:78 379 RLETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKP 458 (480) T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHhcccCCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccCCCccccCC Confidence 4566666666677888888888888876 56776778888887542 11111101111111 1111111111 Q ss_pred CCCCCCCCCC Q lcl|Aclame:pro 400 KGGDKNVNES 409 (409) Q Consensus 400 ~gg~~n~~~~ 409 (409) .+|+..++.. T Consensus 459 ~~~~~~~~~~ 468 (480) T protein:vir:78 459 TVTETKTETQ 468 (480) T ss_pred CCCCCCCccC Confidence 2222221111 No 190 >protein:vir:2732 Length: 501 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:58 # MgeName: O1205 # Cross-refs: genbank:acc:NP_695105;genbank:gi:23455874;genbank:GeneID:955614 Probab=98.00 E-value=7.4e-06 Score=48.70 Aligned_cols=395 Identities=13% Similarity=0.055 Sum_probs=173.4 Q ss_pred Ccch----hhh--------hhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCcee Q lcl|Aclame:pro 1 MAKE----NIV--------TRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLK 68 (409) Q Consensus 1 M~~~----~~~--------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 68 (409) +... +++ .|+.. +.+-+.+... .+.......... ..+.-..+.....+|+..+.-+-.-|+. T Consensus 38 ~~~~~~l~~~i~~~~~~~~~r~~~-l~~yY~g~~~----~i~~~~~~~~~~-~~~~ki~~n~~k~Ivd~~~~yl~g~p~~ 111 (501) T protein:vir:27 38 VNNWELLKNFINHHKLRQAPRIQE-LLDYARGENH----DVLQFGRRKDRE-MADKRAVHNYGRMISKFKTGYLAGNPIR 111 (501) T ss_pred cccHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCc----cccccCccCccc-cccceeccchHHHHHHHHhhhhcccCee Confidence 1111 111 11111 1111111110 110000000000 0111233456667778888777777887 Q ss_pred EeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--ccee- Q lcl|Aclame:pro 69 MYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SREL- 145 (409) Q Consensus 69 ~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~- 145 (409) +...++.....+...|.. -...-........+..+++.+|.+|.++.++..|.+ .+..++|..+.+..++. +... T Consensus 112 ~~~~d~~~~~~~~~~l~~-~~~~n~~~~~~~~~~~~~~~~G~a~~~vy~ded~~~-~i~~~~p~~~~~v~d~~~~~~~~~ 189 (501) T protein:vir:27 112 VEYDDNDNNSQNDDTIKR-IGRINDIDSHNRTLIRDLSQTGRAYEVIYRNEYDET-RIKRLNPLETFVIYDNSLEDNSIA 189 (501) T ss_pred EecCCccchHHHHHHHHH-HHHhcChhHHHHHHHHHHhhCCeEEEEEEeCCCCce-EEEEEccceeEEEecCCCCCceEE Confidence 765554444444443332 111224567788889999999999999999888865 46778898888877653 2221 Q ss_pred ---EEEEEcCCCe--E-EEEccceEEEecCc----------C-----c----ccccccccHHHHHHHHHHHHHHHHHH-- Q lcl|Aclame:pro 146 ---YYSIHAATGN--K-LIVHNMDMLHFKHI----------V-----A----SNMVQGISPIDVLKNTTDFDNAVRTF-- 198 (409) Q Consensus 146 ---~~~~~~~~g~--~-~~~~~~~vih~~~~----------~-----~----~~~~~G~sp~~~~~~~i~~~~~~~~~-- 198 (409) +|......+. . ..+.++.|.++... + | .+...|.|.++.+...++....+... T Consensus 190 ~ir~~~~~~~~~~~~~~~vyt~~~v~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~~~S~~~ 269 (501) T protein:vir:27 190 AVRYYNRGTLQNAKDVVEIYTNEHIYTLDASDDFNEISVTTHAFGTVPITEFLNNVDGIGDYETELYLIDLYDSAESDTA 269 (501) T ss_pred EEEEEEeeecCCcEEEEEEEeCCeEEEEEeCCceeeccccccCCCcccEEEecCCCCCCCchhhhHHHHHHHHHHHHHHH Confidence 1111111111 1 12233433332210 0 0 11234777777666666544433222 Q ss_pred -HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 199 -NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQL 277 (409) Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgv 277 (409) ....+..+-..+.-......++....++....-.....+.....+++.++..++....+..+....+...+.|+..-++ T Consensus 270 ~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~ 349 (501) T protein:vir:27 270 NHMSDMADAILAIYGDLALPKGMQASDMKRTRLMQLKPPKSADGKEGTVKAEYLTKSYDVSGAEAYKTRLNRDIHIFTNI 349 (501) T ss_pred HHHHHhcCceeeeecCccCCcccchhhhhhcCceeecccccccCCCCCcceeeeeccCCHHHHHHHHHHHHHHHHHHhCC Confidence 2333333322222111111222222222210000111222223444556655655555556677778888899999999 Q ss_pred ChhhcCCcccCcccc--HHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHH Q lcl|Aclame:pro 278 PSIFLNARSNTNFAK--NEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSA 345 (409) Q Consensus 278 p~~~l~~~~~~~~~~--~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~ 345 (409) |..-.+.. .++-|. .+. .....+...+.-.++.+...++..- .........+.+.+......+.. T Consensus 350 p~~~~~~~-~~n~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~--~~~~~d~~~i~v~f~~~~p~n~~ 426 (501) T protein:vir:27 350 PDMSDTNF-SGNTSGEALKYKLFGLDQDRVDTQSQFTQGLKRRYRLAARIGSLVN--EFKDFDESLLKITFTPNLPKSLN 426 (501) T ss_pred cccCcccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cccccccccceEEeCCCCCcCHH Confidence 86544322 122111 111 1112333333333333333333211 11111122355566677788889 Q ss_pred HHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCE----------Eeeccccc-chhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 346 TQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDK----------PLISGDLY-PIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 346 ~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~----------~~~~~n~~-~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +.++.+.++ .|+++..-+.+.++.-.-| ..+. -.+...+. +++...+.+.. .++++.+.-. T Consensus 427 e~ad~~~kl--~g~iS~et~l~~l~~v~D~~~E~eri~~E~~e~~~~~~~~~~~~~~~~~~d~~~~-~~~d~~e~~~ 500 (501) T protein:vir:27 427 EQVSILTGL--GGQVSQETALSLSGLVESPNEELDKINKEVSEIDFKGYSNDFNEHVGKYTDEVKE-THTDDFERAY 500 (501) T ss_pred HHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHHhhhHhhhcCccccccccccCCCCC-CccccccccC Confidence 999998887 5889888888877553211 1110 01111110 00111100000 1111111111 No 191 >protein:vir:96839 Length: 474 # NCBI annotation: ORF008 # Family: family:all:125 # MgeID: mge:1642 # MgeName: EW # Cross-refs: genbank:acc:YP_240152;genbank:gi:66395815;genbank:GeneID:5133180 Probab=98.00 E-value=7.7e-06 Score=48.62 Aligned_cols=380 Identities=11% Similarity=0.041 Sum_probs=158.5 Q ss_pred Ccch---hhhhhhhhh---h--hcccc-cCcc-cccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE---NIVTRIKKK---L--IDNWI-DQSA-SKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~---~~~~r~~~~---~--~~~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) +... +++...+.+ . ...+. +... ...... ..........-++.-..++....+++..+.-+-.-|+.+. T Consensus 26 ~~~~~i~~~i~~~~~~~~~~~~~~~Yy~g~~~i~~~~~~-~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~~l~g~p~~~~ 104 (474) T protein:vir:96 26 TQEEMIIRLINDHKPKIDDITVGERYYNHDPDVLRLAPK-LDNKGEIDPLKPDWRMFTNYHQNLVDQKVAYAVANPVTFS 104 (474) T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhccch-hcccccccccccchhcccchHHHHHHhhhhhhcccCceee Confidence 1110 111111100 0 00011 1100 000000 0000000000111112345556677777777767777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY- 147 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~- 147 (409) -.++.....+...+. | ........+..+++.+|.+|..+..+..|++ .+..++|..+.+..++. +..... T Consensus 105 ~~d~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~~y~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~~~v 177 (474) T protein:vir:96 105 SDDDKSLKTIQEVLN---H---KWDDKLVDILTAASNKGIEWLQPYIDENGEF-KTFRVPAEQAIPIWTNKERDTLKAFI 177 (474) T ss_pred cCchHHHHHHHHHHh---c---CHHHHHHHHHHHHHhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 444333333333332 1 2345556667889999999999988888875 48889999988887652 222211 Q ss_pred -EEEcCCCeE-EEEccceEEEecCc-------------------------Cc---------ccccccccHHHHHHHHHHH Q lcl|Aclame:pro 148 -SIHAATGNK-LIVHNMDMLHFKHI-------------------------VA---------SNMVQGISPIDVLKNTTDF 191 (409) Q Consensus 148 -~~~~~~g~~-~~~~~~~vih~~~~-------------------------~~---------~~~~~G~sp~~~~~~~i~~ 191 (409) .+....... ..+..+.|.|+... ++ .+...|.|-++.+...++. T Consensus 178 r~~~~~~~~~~~~yt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iPvv~~~nn~~g~sd~e~v~~liDa 257 (474) T protein:vir:96 178 RYYRLDGAERVEYWTDSDVTYYEYQDGILIPDYYHGEEHIQSHYYVGNKRVSWGRVPFIPFKNNPQEMSDLFMYKTIIDA 257 (474) T ss_pred EEEeecCceEEEEEeCCeEEEEEecCCceeeccccccccccccccccccccCCCceeEEEeccCCCCCCcHHHHHHHHHH Confidence 111111111 12233333333210 00 0112366666665555543 Q ss_pred HHHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHHHHHHHHH Q lcl|Aclame:pro 192 DNAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDIVASENLT 267 (409) Q Consensus 192 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~~e~~~~~ 267 (409) ...+. ......++.+- .++ .+... ++.+.+... . ...+++.++ .|.+++.++.......+.+..+.. T Consensus 258 ~d~~~S~~~~~~~~~~~~~-lv~-~g~~~--~~~~~~~~~----~-~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~l 328 (474) T protein:vir:96 258 MDKRLSDTQNTFDESTELI-YIL-KGYEG--QDLDEFMRN----L-KYYKAINVDGDGSGVDTIQIEVPVQSSKEYLDML 328 (474) T ss_pred HHHHHHHHHHHHHHhccce-eee-ecCCc--ccccchhhh----h-hcCceEEecCCCCceeEEeecCChHHHHHHHHHH Confidence 33222 22233333332 222 22111 111111111 1 123555554 455555565554555667778888 Q ss_pred HHHHHHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEe Q lcl|Aclame:pro 268 RERVANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKF 334 (409) Q Consensus 268 ~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~ 334 (409) .+.|+..-++|..-.... .++- +..+. .+..+...+...++.|...+ .... ....+.+ T Consensus 329 ~~~i~~~s~~p~~~~~~~-~~n~-Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~~i~~~~-----~~~~--~~~~i~i 399 (474) T protein:vir:96 329 RDYVIEFGQGVDFQQDKF-GNSP-SGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFY-----KLNI--KVQDVEI 399 (474) T ss_pred HHHHHHHhCCcccccccc-cccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCc--ccceeeE Confidence 899999999986543221 1111 11111 11222223333333222221 1111 1122344 Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecc-cccchhccccc-ccccCCCCCCCCCC Q lcl|Aclame:pro 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG-DLYPIDTPLEL-RKSLKGGDKNVNES 409 (409) Q Consensus 335 d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~-n~~~~~~~~~~-~~~~~gg~~n~~~~ 409 (409) .+..-...+..+.++. +.++|+++...+++.++.-+-+.-..-.+-. +.......... .....+.+++++++ T Consensus 400 ~f~~~~p~~~~e~~~~---~~~ag~iS~et~~~~~~~v~d~~~E~~ri~~E~~e~~~~~~~~~~~~~~~~~d~~~e~ 473 (474) T protein:vir:96 400 TFNFNVMVNELEQSQI---GVQSQYLSKETVVTNHPWVDDPVAELERIEQDNIDFNKQLPPLEGDANGRAQDNESET 473 (474) T ss_pred EeccCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCcccC Confidence 4444455566555554 5668999999999887543211100000000 00000000000 01112222333333 No 192 >protein:vir:3609 Length: 452 # NCBI annotation: ORF32 # Family: family:all:125 # MgeID: mge:74 # MgeName: TP901-1 # Cross-refs: genbank:acc:NP_112695;genbank:gi:13786563;genbank:GeneID:921063 Probab=97.95 E-value=9.5e-06 Score=48.12 Aligned_cols=377 Identities=10% Similarity=0.025 Sum_probs=160.9 Q ss_pred Ccch---hhhhhhhhhh-----hcccccCcccccccccccC-CCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAKE---NIVTRIKKKL-----IDNWIDQSASKLYDFSPWK-NKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~~---~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |-.. +++....... ...+..... .+..-. ...... ..-...+.....|+..+.-+-.-|+.+.. T Consensus 17 ~~~~~i~~~i~~~~~~~~r~~~~~~Yy~g~~----~i~~~~~~~~~~~---~~ki~~n~~~~ivd~~~~~l~g~~~~~~~ 89 (452) T protein:vir:36 17 ITVEVVTKFMEKHKLEVARYEYLKNMYLGIM----AIDDEPAKDSWKP---DNRLAVNFTKYIVDTFTGYFNGIPVKKSH 89 (452) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc----ccccCccccccCc---cceeecchHHHHHHHHhhhhcccCceeec Confidence 2211 1111111100 001111110 110000 000000 11122345556667677666666766644 Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc--eeE--E Q lcl|Aclame:pro 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR--ELY--Y 147 (409) Q Consensus 72 ~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~--~~~--~ 147 (409) .++.....+...+.. -........+..+.+.+|.+|..+.++.+|.+ .+..++|..+.+..++... ..+ + T Consensus 90 ~d~~~~~~l~~~~~~-----n~~~~~~~~~~~~~~~~G~~~~~v~~d~~g~~-~i~~~~p~~~~~v~d~~~~~~~~~~i~ 163 (452) T protein:vir:36 90 SDKEILTKLQEFDNL-----NDMEDEESELAKMACIYGRAFEFLYQDEDTQT-NVVYNSPENMFMVYDDTVKQEPLFAVR 163 (452) T ss_pred CChhHHHHHHHHHhh-----cChhHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEEcCCCCCceEEEEE Confidence 433322323333321 23455667788899999999999998888875 5777889888887765421 211 1 Q ss_pred EEEcCCCe-E-EEEccceEEEecCcC----------------c----ccccccccHHHHHHHHHHHHHH---HHHHHHHh Q lcl|Aclame:pro 148 SIHAATGN-K-LIVHNMDMLHFKHIV----------------A----SNMVQGISPIDVLKNTTDFDNA---VRTFNLTE 202 (409) Q Consensus 148 ~~~~~~g~-~-~~~~~~~vih~~~~~----------------~----~~~~~G~sp~~~~~~~i~~~~~---~~~~~~~~ 202 (409) .+....+. . ..+.++.++++.... | .+...|.|-++.+...++.... -....... T Consensus 164 ~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~iPvv~~~n~~~g~sd~e~v~~liDa~d~~~s~~~~~~~~ 243 (452) T protein:vir:36 164 YGVDEDKKLQGEVYTLLETIKISGENDEISFGEGTYNPYPDLPVVEFYFNEERMSIFESVISLVNAFNKAISEKANDVDY 243 (452) T ss_pred EEEecCceEEEEEEecCeEEEEEEcCCceEEecceeccCCcccEEEecCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH Confidence 11111111 1 123344443332100 0 1112466666555544443322 22222333 Q ss_pred cCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-----CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcC Q lcl|Aclame:pro 203 MQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQL 277 (409) Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgv 277 (409) ++.+ .. +..+..++++....++. ++.+.++ .+.++..++.......+....+...+.|+..-++ T Consensus 244 ~~~p-~~-~~~g~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~ 312 (452) T protein:vir:36 244 FSDQ-YL-TFLGAAVEEEDLKNIRS---------NRVINYYADGEGKNVDVKFLEKPDSDSQTENLLDRLTKLIFQTTMV 312 (452) T ss_pred hcCc-ee-EeecCCcCchhhhhhhh---------cceEEecCCCCccCCcceeEeecCCHHHHHHHHHHHHHHHHHHhCc Confidence 4433 22 22344455544433322 1222221 1223333444444555677777888899999898 Q ss_pred ChhhcCCcccCccccHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHH Q lcl|Aclame:pro 278 PSIFLNARSNTNFAKNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQ 347 (409) Q Consensus 278 p~~~l~~~~~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~ 347 (409) |..-.+..++.++...+. .....+..++...++.+...++.. -. ......+.+.+..-...|..+. T Consensus 313 p~~~~~~~gn~Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~-~~---~~~~~~i~i~f~~~~p~d~~~~ 388 (452) T protein:vir:36 313 ANISDESFGSSSGVSLAYKLQAMSNLALSFQRKFQSSLNSRYKLFCELSTNV-SN---KDSWKDIEYTFTRNEPKDIKEQ 388 (452) T ss_pred cccCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC---ccccccceEEeCCCCCcCHHHH Confidence 864332221111111111 122223333333333333322221 01 1111234455556677788999 Q ss_pred HHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeecccccchhcccccc----cccCCCCCCCCC Q lcl|Aclame:pro 348 AEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGDLYPIDTPLELR----KSLKGGDKNVNE 408 (409) Q Consensus 348 ~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~~~~~~~~~----~~~~gg~~n~~~ 408 (409) ++.+.++ .|+++..-+.++++.-+-+. .+.+.-- +-.......... ...+..+.+++| T Consensus 389 a~~~~k~--~g~iS~et~~~~~~~~~d~~~E~~ri~~E-~~~~~~~~~~~~~~~~~~~~~~~~~~~e 452 (452) T protein:vir:36 389 AETANIL--MGITSQETALSVISVIPDVQAEMEKIKKE-EASTAIFDKDKQPSEKGTDTVVSETNEE 452 (452) T ss_pred HHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHH-HHHHHHHHhhccCCCCcccccCccccCC Confidence 9998887 57899888888886533211 1100000 000000000000 001111122222 No 193 >protein:vir:78227 Length: 480 # NCBI annotation: gp11 # Family: family:all:524 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491663;genbank:gi:157786487;genbank:GeneID:5625705 Probab=97.91 E-value=1.1e-05 Score=47.73 Aligned_cols=388 Identities=12% Similarity=0.057 Sum_probs=158.1 Q ss_pred Ccch-hhhhhh-------hhhh--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE-NIVTRI-------KKKL--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~-~~~~r~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |.=. -++.++ ..++ ...+...... +-..+....... .+.-....+...+|+..++-+--..|.+- T Consensus 1 ~~t~~~~i~~L~~~~~~~~~r~~~l~~Yy~G~~~-i~~~~~~~~~~~----~~~~~~~n~~~~ivd~~~~~l~~~g~~~~ 75 (480) T protein:vir:78 1 MTTYHEHVERLQGLLARDLPNLLEAEAYRNGTRR-LKTIGIGAPPEL----AYLDVQPGWVATYLRTLSDRLDIEGFRIS 75 (480) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccccchhH----hhhhhhcchHHHHHHHHHhhhccCceecC Confidence 3321 111111 1110 1111111100 000000000000 01111223445666666665533344322 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec------CCCceeEEEeeCCcceEEEEcCC--c Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD------IYHQPSKLFLLNPDVVEMLIENQ--S 142 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~------~~G~~~~l~~l~p~~v~~~~~~~--~ 142 (409) +++.....+...+.. | ........+..+++.+|.||..+.+. ..|. ..+.+++|..+.+.+|+. + T Consensus 76 -~d~~~~~~l~~i~~~--N---~~d~~~~~~~~~a~~~G~ay~~v~~~~~~~~d~~g~-~~i~~~~p~~~~~~~D~~~~~ 148 (480) T protein:vir:78 76 -EDSEGLEELWNWWQA--N---DLDEESVLGHDDSLTFGRSYITVSHPDVESGDPAGI-PLIRVESPLYMYAELDPRNTR 148 (480) T ss_pred -CCchhHHHHHHHHHh--c---CHHHHHHHHHHHHhhcCceEEEEecCccccCCCCCe-eEEEEEcccceEEEEcCCCcc Confidence 122222333333331 2 23556677888999999999888753 3443 346778888888877653 2 Q ss_pred ceeE----EEEEcCCCeE---EEEccc-----------------------------eEEEecCcCcccccccccHHHH-H Q lcl|Aclame:pro 143 RELY----YSIHAATGNK---LIVHNM-----------------------------DMLHFKHIVASNMVQGISPIDV-L 185 (409) Q Consensus 143 ~~~~----~~~~~~~g~~---~~~~~~-----------------------------~vih~~~~~~~~~~~G~sp~~~-~ 185 (409) .... |.-....+.. ..+.++ -|+||.+.......+|.|-++- + T Consensus 149 ~~~~~i~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~f~n~~~~~~~~G~s~i~~~v 228 (480) T protein:vir:78 149 RVTRAVRLYTTRDDVAVPDRATLYLPDETVPLRRNGGLNDQWVVDGDVIKHGLGVVPVVPLTNDPRLGNRYGRSEISPEL 228 (480) T ss_pred ceEEEEEEEEeecCCCceEEEEEEeCCeEEEEEecCCCccccccccccccCCCCCcceEEeecccccCCccCcccchhhH Confidence 2211 1111111110 011122 3445554433444567775542 3 Q ss_pred HHHHH---HHHHHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-CCceeeeccCChhhHHHH Q lcl|Aclame:pro 186 KNTTD---FDNAVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-PGVEIEPLPKKYVSEDIV 261 (409) Q Consensus 186 ~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-~g~~~~~l~~~~~d~~~~ 261 (409) ...++ ...+-.......+..+-..+ .+....+...+.-...|... .+.+..++ ++.++.++.....+ .++ T Consensus 229 ~~l~Da~~~~~s~~~~~~~~~a~p~~~i--~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~ 302 (480) T protein:vir:78 229 RKVTDAASRTLMNLQSASQILGTPLRVI--SGVTTDELTNDGENTTLDIY---YGRILTLASEAAKISEFKAAELR-NFA 302 (480) T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhhh--hcCCccccccccccchhhhh---hhhhccCCCCCceEEecCccCHH-HHH Confidence 33333 22222222233333332222 12222211111111112211 22344443 45777776654322 267 Q ss_pred HHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHH----HHHH------hhcChhhccccce Q lcl|Aclame:pro 262 ASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEE----EFNR------KLLTKTDREKNRY 331 (409) Q Consensus 262 e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~----~ln~------~ll~~~~~~~~~~ 331 (409) +..+....+|+..=++|+..+++... +.++.++.. +....+.-.+...+. .|.+ .+........... T Consensus 303 ~~l~~~i~~~~~~~~~p~~~~g~~~~-n~~Sg~Alk--~~~~~l~~ka~~~~~~f~~~l~~~~~l~~~~~g~~~~~~~~~ 379 (480) T protein:vir:78 303 EEMEVFRKEAASITGLPPQYLSSSSE-NPASAEAII--ATDSRIVKMAERKGRIFGGAWERAMRIAMQIMGREVTEEYTR 379 (480) T ss_pred HHHHHHHHHHhcccCCChHHhccccC-cchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccee Confidence 77888888999999999999976432 222222221 111122222222221 1211 1111111112233 Q ss_pred EEecchhhhhhhHHHHHHHHHHHHhcC--CcCHHHHHHHhCCCCCCC--CCEEeecccccchhccc-------ccccccC Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYFKAVRSG--YYTINDIREWEDLPPVEG--GDKPLISGDLYPIDTPL-------ELRKSLK 400 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~~~~~~g--~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~~~~~~-------~~~~~~~ 400 (409) +++.+......+..+.++.+.+++.+| +++..-+++.+|+.+-+- .+...-...-.+++... ....... T Consensus 380 i~v~f~~~~~~s~~~~ad~~~kl~~~g~~~~s~et~~~~lg~~~d~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 459 (480) T protein:vir:78 380 LETVWRDPSTPTVAAKADAVSKLYANGQGPIPKEQARIDLGYTATQREQMRDWDKQETEDMIDTLYSTTKAQADATPKPT 459 (480) T ss_pred eeEEecCCCCCCHHHHHHHHHHHHHhccccCCHHHHHhcCCCCHhHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCC Confidence 555555555667888888888888876 677777788888865321 11000000000011000 0000000 Q ss_pred CCCC-CCC----CC Q lcl|Aclame:pro 401 GGDK-NVN----ES 409 (409) Q Consensus 401 gg~~-n~~----~~ 409 (409) +|+. .+. +| T Consensus 460 ~~~~~~~~~~~~~~ 473 (480) T protein:vir:78 460 VTETKTETQTSPSG 473 (480) T ss_pred CCCCCCccccccCC Confidence 1111 111 11 No 194 >protein:vir:105461 Length: 470 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1502 # MgeName: KC5a # Cross-refs: genbank:acc:YP_529871;genbank:gi:90592611;genbank:GeneID:3974525 Probab=97.91 E-value=1.1e-05 Score=47.70 Aligned_cols=379 Identities=12% Similarity=0.039 Sum_probs=159.8 Q ss_pred Ccchhh---hhhhhh----h------hhcccccCccccccccc-cc----CCCCccccchhHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MAKENI---VTRIKK----K------LIDNWIDQSASKLYDFS-PW----KNKSFWGVINNTLETNETIFSAITKLSNSM 62 (409) Q Consensus 1 M~~~~~---~~r~~~----~------~~~~~~~~~~~~~~~~~-~~----~~~~~~~v~~~~~~~~~~v~~~i~~ia~~i 62 (409) |....+ +.+... . ..+-+.+.... +.... .. .........+..-..+......|+..+.=+ T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~~~I-~~~~~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Iv~~~~~yl 79 (470) T protein:vir:10 1 MELDALKKLIQNTSTSRNDLINNYKQAVNYYENKTDI-TTRNNGKAKLNKEGKKDPLRSADNRIPSNFYQLLVDQEAGYV 79 (470) T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-hccccchhcccccccccccccCCcccccchHHHHHHhhhhhe Confidence 443321 111100 0 00001111000 00000 00 000000000111122334445566666666 Q ss_pred ccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC- Q lcl|Aclame:pro 63 ASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ- 141 (409) Q Consensus 63 a~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~- 141 (409) -+-|+.+...++.....+...++. ....-...+..+++.+|.||.++.++..|.+ .+..++|..+-+..++. T Consensus 80 ~G~p~~~~~~d~~~~~~l~~~~~~------~~~~~~~~l~~~~~~~G~a~~~~y~d~~~~~-~~~~~~p~~~~~v~d~~~ 152 (470) T protein:vir:10 80 ASVFPDIDVGKDADNKKIIDVLGD------DRALTLNGLLVDSSNAGRAWLHYWIDEDGNF-RYGIIQPDQITPIYATTL 152 (470) T ss_pred eccceeeecCchHHHHHHHHHHhh------hHHHHHHHHHHHHhhcCeeEEEEEecCCCce-EEEEEcccceEEEEcCCC Confidence 677777654443333334444432 2445555677899999999999999988864 57778998888887654 Q ss_pred -ccee----EEEEEcCCCe-E----EEEccceEEEecCcCc--------------------------------------- Q lcl|Aclame:pro 142 -SREL----YYSIHAATGN-K----LIVHNMDMLHFKHIVA--------------------------------------- 172 (409) Q Consensus 142 -~~~~----~~~~~~~~g~-~----~~~~~~~vih~~~~~~--------------------------------------- 172 (409) +... +|......+. . ..+....+.|++.... T Consensus 153 ~~~~~a~ir~y~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~ 232 (470) T protein:vir:10 153 DNKLLGILRSYKQLDPDSGKYFTVHEYWTDKEAQFFRTNATDSTVIEPYNIITSYDLSAGYETGQSNTLKHNFGRVPFIE 232 (470) T ss_pred CCceEEEEEEEEeeecCCceEEEEEEEEcCCcEEEEEeecCcceeccccccccccccccccccccccccccCCCeeeEEE Confidence 2221 2222222221 1 1123344444321100 Q ss_pred -ccccccccHHHHHHHHHHHHHHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeec------ Q lcl|Aclame:pro 173 -SNMVQGISPIDVLKNTTDFDNAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQ------ 242 (409) Q Consensus 173 -~~~~~G~sp~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl------ 242 (409) .+...|.|-++.+...++....+. ......++.+--. ++ +.... +.......+. .. +.+.+ T Consensus 233 ~~nn~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~lv-l~-g~~~~--~~~~~~~~~~----~~-~~i~~~~~~~~ 303 (470) T protein:vir:10 233 FSKNKYRLPELNKYKGLIDAYDDIYNGFINDLDDVQTVILV-LT-NYGGA--DLHQFMNDLR----KY-KSIKINNTGNG 303 (470) T ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhcCccee-ee-cCCcc--ccchhhhhhh----hc-CeEeccCCCCC Confidence 011246666666555554433322 2223334433222 22 21111 1111222111 11 22222 Q ss_pred -CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHH----------HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 243 -EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNE----------ELNRFYLQHTLLPIVKQ 311 (409) Q Consensus 243 -~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e----------~~~~~~~~~~l~P~~~~ 311 (409) +++++|..... ....+....+...+.|+..-++|..-....++.++...+ ...+..+..++.-.++. T Consensus 304 ~~~~~~~lt~~~--~~~~~~~~~~~L~~~I~~~s~~p~~~~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~ 381 (470) T protein:vir:10 304 DNSGVDKLQIDI--PVEARDDALKITRKNIFLFGQGIDPANFESSNASGVAIKMLYSHLELKAAKTQTYFEHAINELVRA 381 (470) T ss_pred cCceeEEEeecC--ChHHHHHHHHHHHHHHHHHhCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 12344544333 344456667777888888888775322221111111111 11222233333333333 Q ss_pred HHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeecccccch Q lcl|Aclame:pro 312 YEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGDLYPI 389 (409) Q Consensus 312 ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n~~~~ 389 (409) |...++. .. .....+.+.+..-...|..+.++.+.++ +|+++.--+++.+++-.-+. .+.+---.. ... T Consensus 382 i~~~l~~-----~~-~d~~~i~i~f~~~~p~d~~e~~~~~~~~--~g~iS~et~l~~~p~v~D~~~E~eri~~E~~-e~~ 452 (470) T protein:vir:10 382 IMRYLNF-----SD-ADKRHISQHWTRTKVEDSLTKAQIVSTV--ANYSSKEAVAKANPIVDDWQQELKDLAKDKE-END 452 (470) T ss_pred HHHHhcc-----cC-cccceeeEEeccCCCCCHHHHHHHHHHH--hccCcHHHHHHhCCCCCCHHHHHHHHHHHHH-HHH Confidence 3332221 11 1223456666777788899999988887 68898888888776532111 110000000 000 Q ss_pred hcccccccccCCCCCCCC Q lcl|Aclame:pro 390 DTPLELRKSLKGGDKNVN 407 (409) Q Consensus 390 ~~~~~~~~~~~gg~~n~~ 407 (409) ....+.....++|+++++ T Consensus 453 ~~~~~~~~~~~~~~dde~ 470 (470) T protein:vir:10 453 PYSNQADELNGKGVNDEQ 470 (470) T ss_pred HhhccccccCCCCCCCCC Confidence 000111111223333333 No 195 >protein:vir:9306 Length: 511 # NCBI annotation: phi Mu50B-like protein # Family: family:all:125 # MgeID: mge:165 # MgeName: phi 11 # Cross-refs: genbank:acc:NP_803284;genbank:gi:29028594;genbank:GeneID:1258040 Probab=97.88 E-value=1.3e-05 Score=47.41 Aligned_cols=391 Identities=10% Similarity=0.061 Sum_probs=164.6 Q ss_pred Ccc---hhhhhhhhhh-------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAK---ENIVTRIKKK-------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~---~~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) +-. .+++++.... +.+-+.+... -+..... ....+.. +.-..+......++..+.-+-.-|+.+. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~-il~~~~~-~~~~~~~---~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:93 40 QNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTK-NLVELTR-RKEEYMA---DNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCc-cccccCc-CcccccC---cceeecchHHHHHHHHhhhhcccCeeec Confidence 110 0111111000 0111111110 0000000 0000000 0112234455566666666667777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--ceeE-- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--RELY-- 146 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~~-- 146 (409) ..++.....+...+. .-........+..+++.+|.||.++.++.+|.+ .+..++|..+.+..++.. .... T Consensus 115 ~~d~~~~~~l~~~~~-----~n~~~~~~~~~~~~~~~~G~ay~~vy~de~~~~-~i~~~~p~~~~~vydd~~~~~~~~~v 188 (511) T protein:vir:93 115 DDDKDVLEVIEAFND-----LNDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGV 188 (511) T ss_pred cCChHHHHHHHHHHh-----hcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEE Confidence 333322222222222 224566777888899999999999999888865 577889998888776542 2221 Q ss_pred --EEEEcCCC---e----EEEEccceEEEecCcCc-------------------------ccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 147 --YSIHAATG---N----KLIVHNMDMLHFKHIVA-------------------------SNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 147 --~~~~~~~g---~----~~~~~~~~vih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~ 192 (409) |......+ . ...+.++.+.+++.... .+...|.|-++.+...++.. T Consensus 189 r~~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:93 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCccccccccccccccCCCccceEEecCCCCCCCchhhHHHHHHHH Confidence 21111111 1 11234555555422110 01124677676666666544 Q ss_pred HHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcC----CCceeecCCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 193 NAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEE----NGGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 193 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ..+... ....+..+ ..++......+.++....++...-.... .+...-.+++.++..++.......+....+ T Consensus 269 d~~~S~~~~~~~~~~~~-~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 347 (511) T protein:vir:93 269 DNAESDTANYMSDLNDA-MLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKD 347 (511) T ss_pred HHHHHHHHHHHHHhhCc-ceeeecCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHH Confidence 332211 22333322 2222222223333333322211100000 011112334555555555445555677778 Q ss_pred HHHHHHHHHhcCChhhcCCcccCccccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceE Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARSNTNFAKNEE-------------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYF 332 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~-------------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~ 332 (409) ...+.|+..-++|..-.+... ++-| ..+ .....+..++.-.++.|...++.+--... ...-..+ T Consensus 348 ~L~~~I~~~s~~P~~~~~~~~-~n~S-g~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~l~~~~~~~~-~~d~~~i 424 (511) T protein:vir:93 348 RLNSDIHMFTNTPNMKDDNFS-GTQS-GEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDA-NKDFNTV 424 (511) T ss_pred HHHHHHHHHhCCccccccccc-ccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-ccccccc Confidence 888899999999875443221 2211 111 11222333333333333332222110000 0111234 Q ss_pred EecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe------ecccccchhcccccccccCCCCC Q lcl|Aclame:pro 333 KFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL------ISGDLYPIDTPLELRKSLKGGDK 404 (409) Q Consensus 333 ~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~------~~~n~~~~~~~~~~~~~~~gg~~ 404 (409) ++.+..-...+..+.++.+.++ .|+++.--++++++.-+-+. .+.+- +.....+........ ..+.+++ T Consensus 425 ~~~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~-~~~~~~~ 501 (511) T protein:vir:93 425 RYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDI-NDDEQDD 501 (511) T ss_pred eEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccCCCCC-CCCCCCC Confidence 5555666778889999998888 58899888888876533211 11000 000000000000000 0000000 Q ss_pred CCCCC Q lcl|Aclame:pro 405 NVNES 409 (409) Q Consensus 405 n~~~~ 409 (409) ..++. T Consensus 502 ~~~~~ 506 (511) T protein:vir:93 502 DTKDT 506 (511) T ss_pred ccccc Confidence 00001 No 196 >protein:vir:99522 Length: 470 # NCBI annotation: putative protein # Family: family:all:125 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958533;genbank:gi:41179315;genbank:GeneID:2717160 Probab=97.87 E-value=1.4e-05 Score=47.26 Aligned_cols=379 Identities=12% Similarity=0.073 Sum_probs=164.3 Q ss_pred Cc------ch---hhhhhhh----hh---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MA------KE---NIVTRIK----KK---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMAS 64 (409) Q Consensus 1 M~------~~---~~~~r~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 64 (409) |. .. ++++... .+ +.+-+.+. .++.......+. .+.-+.+.....+|+..+.-+-. T Consensus 19 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~l~~Yy~g~-----~~i~~~~~~~~~---~~~ki~~n~~~~Ivd~~~~~l~g 90 (470) T protein:vir:99 19 FPKGEKLTSNELLGFIAYNETVLKPRYRENMKLYLGK-----HKILTAPEKETG---ADNRIVVNSAKYVVDVYNGYFCG 90 (470) T ss_pred eCCCCCcCHHHHHHHHHHHHHhhHHHHHHHHHHhccc-----cccccCcccccC---CcceeecchHHHHHHHHhhhhcc Confidence 11 11 1111110 00 01111111 111111111111 11112234555666766666666 Q ss_pred CceeEeecccccc-chhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcc Q lcl|Aclame:pro 65 LPLKMYEDYKVVN-TEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSR 143 (409) Q Consensus 65 lp~~~~~~~~~~~-~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~ 143 (409) -|+.+...++... ..+...+. ..........+..+.+.+|.+|..+..+.+|.+ .+..++|..+.+..++... T Consensus 91 ~p~~~~~~~d~~~~~~l~~~~~-----~n~~~~~~~~~~~~~~~~G~~~~~v~~d~dg~~-~i~~~~p~~~~~i~d~~~~ 164 (470) T protein:vir:99 91 IEPKLALLNDSSKIDEIARWNR-----QENFFDTINEISKQCDIFGRSIASIYQGEDARP-HLMYSSPNHAFIIYDDTVQ 164 (470) T ss_pred CCeeEeeCCchhHHHHHHHHHH-----hcCHhHHHHHHHHHHHhcCeeEEEEEeCCCCeE-EEEEEccceeEEEEcCCCC Confidence 6766543332221 22222222 234566778888899999999999998888875 5778899998888776542 Q ss_pred e--e----EEEEEcCCCe---EEEEccceEEEecCc-------------C-----c----ccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 144 E--L----YYSIHAATGN---KLIVHNMDMLHFKHI-------------V-----A----SNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 144 ~--~----~~~~~~~~g~---~~~~~~~~vih~~~~-------------~-----~----~~~~~G~sp~~~~~~~i~~~ 192 (409) . . +|........ ...+..+.++++... + | .+...|.|-++.+...+... T Consensus 165 ~~~~~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liDa~ 244 (470) T protein:vir:99 165 RQPLAFVHYQIDNSNNWTDAYGVIQYADKFYKFKGYDIEEDTNAAGYAINPYGLVPAVEFFENEERQGIFDSIKTLINAL 244 (470) T ss_pred cceEEEEEEEEEecCCeeEEEEEEEecCeEEEEEecccccccccccccccCCCccceEeecCCCCCCcchHhHHHHHHHH Confidence 1 1 1111111111 112334444443210 0 0 11234777676666655544 Q ss_pred HHHHHH---HHHhcCCCceeEEecCCcCCH-HHHHHHHHHHHHHhcCCCceeec-----CCCceeeeccCChhhHHHHHH Q lcl|Aclame:pro 193 NAVRTF---NLTEMQKPDSFMLKYGSNVST-EKRQQVLEDFKQYYEENGGILFQ-----EPGVEIEPLPKKYVSEDIVAS 263 (409) Q Consensus 193 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vl-----~~g~~~~~l~~~~~d~~~~e~ 263 (409) ..+... ....+..+-. ++. +....+ +.-+.+ ..+. ..+++.+ +++.++..++.......+... T Consensus 245 ~~~~s~~~~~~~~~~~~~~-~i~-g~~~~~~~~g~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (470) T protein:vir:99 245 DKVISQKANQVEYFDNAYM-YMI-GFKLPEDDEGNPK-FDFK-----NNRVLYVSQLDPDTNPQIGFIAKPDADQMQENL 316 (470) T ss_pred HHHHHHHHHHHHHhcCcee-eee-cCCcccccccchh-hhhh-----hcceeeecCCCCCCCCcceEEeecCChHHHHHH Confidence 432221 2233333322 222 211222 111111 1111 1122222 234455556555455556677 Q ss_pred HHHHHHHHHHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccc Q lcl|Aclame:pro 264 ENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNR 330 (409) Q Consensus 264 ~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~ 330 (409) .+...+.|+..-++|....+.. .++- +.++. .+..+..++.-.++.+...+...--.. .... T Consensus 317 ~~~l~~~i~~~s~~p~~~~~~~-~~n~-Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~~~~~~~~---~~~~ 391 (470) T protein:vir:99 317 IQHLTDFIFMMAMVPNIQDKNF-AGNS-SGVALQYKLFAMKNKADSKERKFDKSLMQLYRIVLATLFNNKQDQ---ELWS 391 (470) T ss_pred HHHHHHHHHHHhCCcccccccc-ccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccc Confidence 8888999999999987544332 1221 11111 112233333333333333332221111 1123 Q ss_pred eEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCC-CCCCEEeecccccchhcccc--cccccCCCCCCCC Q lcl|Aclame:pro 331 YFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPV-EGGDKPLISGDLYPIDTPLE--LRKSLKGGDKNVN 407 (409) Q Consensus 331 ~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~-~~gd~~~~~~n~~~~~~~~~--~~~~~~gg~~n~~ 407 (409) .+.+.+..-...+..+.++.+.++. |+++...++++++.-.. ...+.+.--. ....+.... ......+.+.+++ T Consensus 392 ~i~v~f~~~~p~~~~e~a~~~~kl~--giis~et~l~~l~~vd~~~E~eri~~E~-~~~~~~~~~~~~~~d~~~~d~~~e 468 (470) T protein:vir:99 392 ELDFKFTRNLPEDMASAIDNAKNAE--GIVSKKTQLGMIPDIEPDAEMKQIAKEK-ADAIKQTQQLSMPIDILKRDNNAE 468 (470) T ss_pred cceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCHHHHHHHHHHHH-HHHHHHHHhhcCCCCcCCCCCCcc Confidence 4555566777788899999988884 78998888887755310 0011110000 000000000 0000111111111 Q ss_pred CC Q lcl|Aclame:pro 408 ES 409 (409) Q Consensus 408 ~~ 409 (409) |- T Consensus 469 e~ 470 (470) T protein:vir:99 469 EE 470 (470) T ss_pred CC Confidence 11 No 197 >protein:vir:105292 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1679 # MgeName: PH15 # Cross-refs: genbank:acc:YP_950666;genbank:gi:119967836;genbank:GeneID:4643171 Probab=97.86 E-value=1.4e-05 Score=47.17 Aligned_cols=378 Identities=11% Similarity=0.018 Sum_probs=156.8 Q ss_pred Ccchhh----------hhhhhh----------------------h--hhcccccCccccccccc-c-cCCCCccccchhH Q lcl|Aclame:pro 1 MAKENI----------VTRIKK----------------------K--LIDNWIDQSASKLYDFS-P-WKNKSFWGVINNT 44 (409) Q Consensus 1 M~~~~~----------~~r~~~----------------------~--~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~~~ 44 (409) |+=.|+ +.++.. . ..+-+-+... -..... . ........ -... T Consensus 1 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~-i~~~~~~~~~~~~~~~~-~~~~ 78 (478) T protein:vir:10 1 MISINWPWDKPYHEQVVEQIKPKYETQEEMILRLVREHKENIDNITMGERYYNHHPD-ILDAPPKRDVNGDYDET-KPDW 78 (478) T ss_pred CccccCCCCchhHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhccccccccccccccc-cccc Confidence 222211 111100 0 0000111000 000000 0 00000000 0011 Q ss_pred HhhhHHHHHHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCcee Q lcl|Aclame:pro 45 LETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPS 124 (409) Q Consensus 45 ~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~ 124 (409) -..+.....+|+..+.-+-+-|+.+...++.....+...+. | ........+..+++.+|.+|+.+..+..|.+ T Consensus 79 ki~~n~~~~ivd~~~~~l~g~~~~~~~~~d~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~~~~d~~g~~- 151 (478) T protein:vir:10 79 RMYTNYHQNLVDQKVAYAVANPVTFGVDNDKALKQIQHTLN---H---KWDDKLVDILTAASNKGIEWVQPYVDEEGEF- 151 (478) T ss_pred eeccchHHHHHHHHHhhhccCCeeeecCChHHHHHHHHHHh---c---CHHHHHHHHHHHHHhcCeEEEEEEecCCCee- Confidence 12234555677777777667777764443332222333332 2 3456667778899999999999988888875 Q ss_pred EEEeeCCcceEEEEcCC--cceeE--EEEEcCCCeE-EEEccceEEEecCc-------------------------Cc-- Q lcl|Aclame:pro 125 KLFLLNPDVVEMLIENQ--SRELY--YSIHAATGNK-LIVHNMDMLHFKHI-------------------------VA-- 172 (409) Q Consensus 125 ~l~~l~p~~v~~~~~~~--~~~~~--~~~~~~~g~~-~~~~~~~vih~~~~-------------------------~~-- 172 (409) .+..++|..+.+..++. +.... +.+....... ..+.++.+.+++.. ++ T Consensus 152 ~~~~~~p~~~~~i~d~~~~~~~~~~v~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (478) T protein:vir:10 152 KTFRVPAEQAVPIWTNKERDELQAFIRVYELDGAERVEYWTKDDVTYYELKEGQLIPDFYRSDDHIQPHYYQGNKLMSWG 231 (478) T ss_pred EEEEEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCeeeccccccccccccceecccccccCC Confidence 57778888888877643 22211 1111111111 11233333333210 00 Q ss_pred -------ccccccccHHHHHHHHHHHHHHH---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeec Q lcl|Aclame:pro 173 -------SNMVQGISPIDVLKNTTDFDNAV---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQ 242 (409) Q Consensus 173 -------~~~~~G~sp~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 242 (409) .+...|.|-++.+...++....+ .......++.+-. ++ .+....+ ....+... . ..+++.+ T Consensus 232 ~vPvv~~~n~~~g~sd~~~v~~liDa~~~~~S~~~~~~~~~~~p~~-~~-~g~~~~~--~~~~~~~~----~-~~~~~~~ 302 (478) T protein:vir:10 232 RVPFIPFKNNPQEVSDLFMYKTIIDALDKRLSDTQNTFDESVELIY-IL-KGYEGED--MKDFMHNL----K-YYKAISV 302 (478) T ss_pred ccceEEeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhCcee-ee-ecCCccc--cchhhhhh----h-hcceEEe Confidence 02234677666555555433322 2222333443322 22 2221111 11111111 1 1223322 Q ss_pred --CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH-------------HHHHHHHHHHHH Q lcl|Aclame:pro 243 --EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE-------------LNRFYLQHTLLP 307 (409) Q Consensus 243 --~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~-------------~~~~~~~~~l~P 307 (409) +.|.+...++.......+.+..+...+.|...-++|..-.... .++- +.++ .....+...+.. T Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~-~~n~-Sg~Al~~~~~~l~~k~~~~~~~~~~~l~~ 380 (478) T protein:vir:10 303 AGESGSGVDTIKVEVPIDSVKEYTKMLRDYIIEFGQGVDFQQDKF-GNSP-SGIALKFMYSNLDLKANKLKNKTLTALQE 380 (478) T ss_pred cCCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCccccCcccc-cccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 2333433344433455567777888888998888876443221 1111 1111 111222222222 Q ss_pred HHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeeccc Q lcl|Aclame:pro 308 IVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLISGD 385 (409) Q Consensus 308 ~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~~n 385 (409) .++.+...+ ... .....+.+.+..-...|..+.++.+.++ +|+++...+++++++-..+. .+.+.-. + T Consensus 381 ~~~li~~~~-----g~~--~~~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~l~~v~D~~~E~~ri~~E-~ 450 (478) T protein:vir:10 381 LLQYIIDFY-----RLD--VKVQDIEITFNFNVMVNELENSQIAMNS--TGLLSKETILSNHAWVEDPVAEMERIEQE-N 450 (478) T ss_pred HHHHHHHHh-----CCC--cccccceEEecCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHH-H Confidence 222222211 111 1122344445566667888899988887 78999988998887633211 1111000 0 Q ss_pred ccchhcccccccccCC-----CCCCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKG-----GDKNVNE 408 (409) Q Consensus 386 ~~~~~~~~~~~~~~~g-----g~~n~~~ 408 (409) -..............+ +++|..| T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (478) T protein:vir:10 451 IELNQQLPDIEEGLNGEQQRQSENNQPE 478 (478) T ss_pred HHHHhhccccccccCCCCCCCCCCCCCC Confidence 0000000000111111 1222222 No 198 >protein:vir:4073 Length: 279 # NCBI annotation: minor structural protein # Family: family:all:11744 # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043552;genbank:gi:9628686;genbank:GeneID:1261159 Probab=97.85 E-value=2.5e-07 Score=56.83 Aligned_cols=268 Identities=13% Similarity=0.130 Sum_probs=132.7 Q ss_pred CCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeecccc-ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEE Q lcl|Aclame:pro 35 KSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKV-VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYV 113 (409) Q Consensus 35 ~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~-~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~ 113 (409) -+.. .+...|++++-..|.|...+.. .-..+.-++..--|...+-..-++.+..+ .+.|.-.. T Consensus 1 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 64 (279) T protein:vir:40 1 MSLF---------------NLSRRAEDVSFSTFTVQDPTTDLLLGKLLGLVSYFDNVDYSEASKLEDLFYW-ALQGKEVY 64 (279) T ss_pred Cccc---------------ccchhhcccceeeeeecCcchhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-hhccceee Confidence 0001 1122344444444444211100 00112222333345555555555555543 34444322 Q ss_pred EeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCCCeEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 114 LIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAATGNKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDN 193 (409) Q Consensus 114 ~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~ 193 (409) .+.+.+- +- -..+ +..|.... ....+..+.+++|-.+|..|.++. +|.-+- .....+++.. T Consensus 65 ~~~~~~~-~~------~~~~--~~~d~fn~----~vr~~~~~~vtVP~~Dv~IieNPl-----v~v~~e-e~~kM~~la~ 125 (279) T protein:vir:40 65 RVWYGGF-KY------YAQR--VNADQFNI----VVREPNRREVTIRTNDYEMLLNPF-----YGANPQ-RFGVMFGMAS 125 (279) T ss_pred hhhhhhH-HH------HHhh--cCcchhhh----heecCCcceeEeecchhhhhhcch-----heeccc-hhhHHHHHHH Confidence 2221110 00 0001 11111111 223334455666767776665432 343333 3444445544 Q ss_pred HHHHHHHHhcCCCceeEEecC-CcCCHHHHHHHHHHHHHHhcC---CCceeecCCCceeeeccCChhhHHHHHHHHHHHH Q lcl|Aclame:pro 194 AVRTFNLTEMQKPDSFMLKYG-SNVSTEKRQQVLEDFKQYYEE---NGGILFQEPGVEIEPLPKKYVSEDIVASENLTRE 269 (409) Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~ 269 (409) ++....+...+.- .++++.+ ....++..++.+.+++++... =+++.+++.|.+++++.-+..... .+-.++.+. T Consensus 126 nai~~KLD~~~qI-k~fIKTd~d~glee~kekaR~rIk~mlalAk~~nGityid~~ddItQL~kDYStsl-k~die~lkS 203 (279) T protein:vir:40 126 NGIGRRLDSQAQI-KIYWKTKVSSGLKEVWDRIRERLTQQQQLAREFNGVSVIGSDDDIKQIQPDYSGSL-QNDANLAIE 203 (279) T ss_pred hhhhhhhccccee-eeEEecCcchhHHHHHHHHHHHHHHHHHHHHhcCCeeeecCCceeEeecccccccc-HHHHHHHHH Confidence 4333333323222 3344444 334567778888888877642 358999999999999988665543 444667888 Q ss_pred HHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHH------HHHHhhcChhhccccceEEecchhhhhhh Q lcl|Aclame:pro 270 RVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEE------EFNRKLLTKTDREKNRYFKFNVKSYLRAD 343 (409) Q Consensus 270 ~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~------~ln~~ll~~~~~~~~~~~~~d~~~l~~~d 343 (409) +.+..+|||..+|.+ +..|.+..+|+..++.|++++.+- |++.++++... T Consensus 204 ~l~Sq~GinekIL~G------sAtE~q~iAyy~rtVePILkQyek~liY~~E~fv~y~ttta------------------ 259 (279) T protein:vir:40 204 IALSEYGMPRELLYG------QSNEVTIIAFAIQKVLPLLKQHDKNIIFNQENFVAYISTTA------------------ 259 (279) T ss_pred HHHhhcCCchhhccc------cCchhhhhhHHHhhHHHHHHHhcccccchhhhhhhhheecc------------------ Confidence 999999999999954 455899999999999999999775 33333333211 Q ss_pred HHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC Q lcl|Aclame:pro 344 SATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD 378 (409) Q Consensus 344 ~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd 378 (409) +.|.+ |---...+-+|+ |.| T Consensus 260 ------------~gg~~--~s~~~~~~~~~~-~~~ 279 (279) T protein:vir:40 260 ------------KGGAI--ESKSSKRDSEPV-GND 279 (279) T ss_pred ------------cCccc--ccccccccCCCC-CCC Confidence 11111 000111112222 111 No 199 >protein:vir:103951 Length: 511 # NCBI annotation: phage portal protein # Family: family:all:125 # MgeID: mge:1662 # MgeName: phiNM # Cross-refs: genbank:acc:YP_873988;genbank:gi:118430763;genbank:GeneID:4525445 Probab=97.80 E-value=1.8e-05 Score=46.59 Aligned_cols=390 Identities=9% Similarity=0.081 Sum_probs=166.8 Q ss_pred Ccch---hhhhhhhh----h---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE---NIVTRIKK----K---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~---~~~~r~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |-.. +++++... + +.+-+.+... -+..... ....+. .+.-..+......++..+.-+-+-|+.+. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~-i~~~~~~-~~~~~~---~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:10 40 QNVNEVSKCIEHHMDYQRPRLKVLSDYYEGKTK-NLVELTR-RKEEYM---ADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred cCHHHHHHHHHHHHHhhHHHHHHHHHHhcccCc-cccccCc-cccccc---CcceeecchHHHHHHHHhhhhcccCceee Confidence 1111 11111100 0 1111111110 0000000 000010 01112234455566666666667777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee--- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL--- 145 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~--- 145 (409) ..++.....+...+. . -........+..+++.+|.||.++.++.+|.+ .+.+++|..+.+.+++.. ... T Consensus 115 ~~d~~~~~~l~~~~~-~----n~~~~~~~~~~~~~~i~G~ay~~vy~dedg~~-~i~~~~p~~~~~vydd~~~~~~~~~v 188 (511) T protein:vir:10 115 DDDKDVLEAIEAFND-L----NDVESHNRSLGLDLSIYGKAYEIMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGV 188 (511) T ss_pred cCchHHHHHHHHHHh-h----cCHHHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEE Confidence 443322222222222 1 23455667788899999999999999888864 577788988888876543 111 Q ss_pred -EEEEEcCCC---e---EE-EEccceEEEecCcC---------------------c----ccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 146 -YYSIHAATG---N---KL-IVHNMDMLHFKHIV---------------------A----SNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 146 -~~~~~~~~g---~---~~-~~~~~~vih~~~~~---------------------~----~~~~~G~sp~~~~~~~i~~~ 192 (409) +|......+ . .. .+.++.+.++.... | .+...|.|-++.+...++.. T Consensus 189 r~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~f~nn~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:10 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeecccCccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcceeEEEecCCCCCCCchhhhHHHHHHH Confidence 111111111 0 11 23444454442110 0 01124677777666666544 Q ss_pred HHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcC----CCceeecCCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 193 NAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEE----NGGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 193 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ..+... ....+..+ ..++......+.++....++.-.-.... .+...-.+++.++.-++....+..+....+ T Consensus 269 d~~~S~~~~~~~~~~~~-~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~ 347 (511) T protein:vir:10 269 DNAESDTANYMSDLNDA-MLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKD 347 (511) T ss_pred HHHHHHHHHHHHHhhCc-eeeeeccccCCchhhccchhccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHH Confidence 332211 22333322 2222222233444433333211111110 111112334555555665555566677788 Q ss_pred HHHHHHHHHhcCChhhcCCcccCcccc--H----------HHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEE Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARSNTNFAK--N----------EELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFK 333 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~~~~~~~--~----------e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~ 333 (409) ...+.|+..-++|..-.+... ++-|. . .......+...+.-.++.+...+...--... ...-..++ T Consensus 348 ~L~~~I~~~s~~P~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~~~~~~~~~-~~d~~~i~ 425 (511) T protein:vir:10 348 RLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSIDA-NKDFNTVR 425 (511) T ss_pred HHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc-ccccceee Confidence 888899999888875443221 22111 1 1112223333333333333333332111000 11112356 Q ss_pred ecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe------ecccccchhcccccccccCCCCCC Q lcl|Aclame:pro 334 FNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL------ISGDLYPIDTPLELRKSLKGGDKN 405 (409) Q Consensus 334 ~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~------~~~n~~~~~~~~~~~~~~~gg~~n 405 (409) +.+..-...|..+.++.+.++. |+++.--+.+++++-+-+. .+.+- +.....+.... .....+++++ T Consensus 426 i~f~~~~p~d~~~~~~~~~kl~--G~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~---~~~~~~~~~~ 500 (511) T protein:vir:10 426 YVYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKD---PRDINDDEQD 500 (511) T ss_pred EEeCCCCCcCHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhhcccC---CCCCCCCCCC Confidence 6667777888999999999884 7898888888876532111 11000 00000000000 0000000110 Q ss_pred CCCC Q lcl|Aclame:pro 406 VNES 409 (409) Q Consensus 406 ~~~~ 409 (409) +++. T Consensus 501 ~~~~ 504 (511) T protein:vir:10 501 DDTK 504 (511) T ss_pred Cccc Confidence 0000 No 200 >protein:vir:95899 Length: 474 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1588 # MgeName: 71 # Cross-refs: genbank:acc:YP_240382;genbank:gi:66396046;genbank:GeneID:5133410 Probab=97.76 E-value=2.2e-05 Score=46.16 Aligned_cols=379 Identities=10% Similarity=0.017 Sum_probs=158.6 Q ss_pred Ccchhhhhhh----hhh------hhcccccCccc-ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENIVTRI----KKK------LIDNWIDQSAS-KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~~~r~----~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) -....++.+. ... +.+-+.+.... ............ ...-.+.-..+......|+..+.-+-+-|+.+ T Consensus 26 ~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~-~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~ 104 (474) T protein:vir:95 26 ETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNI-DYTKPDWRITTNFHQNLVDQKVSYVAGKPVTY 104 (474) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccc-cccccccccccchHHHHHHhhhhhhcccCcee Confidence 0001111111 000 00101111000 000000000000 00000111123445566777777777778776 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY 147 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~ 147 (409) ...++.....+...+. | ........+..+++.+|.+|..+.++.+|.+ .+..++|..+.+..++. +....+ T Consensus 105 ~~~~~~~~~~l~~~~~---n---~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ 177 (474) T protein:vir:95 105 AHDDDKVLDVIHQVLD---T---RWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAF 177 (474) T ss_pred ccCChHHHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 5444333333333322 2 3556667778899999999999999888864 67778898888877543 222111 Q ss_pred --EEEcCCCeEE-EEccceEEEecCcCc------------------------------ccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 --SIHAATGNKL-IVHNMDMLHFKHIVA------------------------------SNMVQGISPIDVLKNTTDFDNA 194 (409) Q Consensus 148 --~~~~~~g~~~-~~~~~~vih~~~~~~------------------------------~~~~~G~sp~~~~~~~i~~~~~ 194 (409) .+.......+ .+.++.|.++..... .+...|.|-++.+...++.... T Consensus 178 ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~ 257 (474) T protein:vir:95 178 IRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDK 257 (474) T ss_pred EEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHH Confidence 1111111111 233444444321100 0112466666655555543332 Q ss_pred H---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 V---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERV 271 (409) Q Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 271 (409) + .......+..+-. ++ .+ ++.++...+...+. ..+++.++++.+...++....+..+....+...+.| T Consensus 258 ~~S~~~~~~~~~~~p~l-v~-~g--~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I 328 (474) T protein:vir:95 258 RLSDVQNMFDESVELIY-IL-RG--YEGEDLSEFMEGLK-----YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYI 328 (474) T ss_pred HHHHHHHHHHHhhcchh-hh-cC--CCcccccchhhhhh-----ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHH Confidence 2 1222333333321 11 22 12222222222221 234555665655555555545566677788888899 Q ss_pred HHHhcCChhhcCCcccCccccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchh Q lcl|Aclame:pro 272 ANVFQLPSIFLNARSNTNFAKNEE-------------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKS 338 (409) Q Consensus 272 a~~fgvp~~~l~~~~~~~~~~~e~-------------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~ 338 (409) +..-++|..-.... .++ .+..+ ..+..+...+...++.+...++. . .....+.+.+.. T Consensus 329 ~~~s~~p~~~~~~~-~~n-~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~-----~--~d~~~i~i~f~~ 399 (474) T protein:vir:95 329 VEFGQGVDFQTDKF-GSA-TSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKI-----K--LDAKEIEITFNF 399 (474) T ss_pred HHHhCCcCcccccc-ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C--cccceeeEEecC Confidence 99999885443221 111 11111 12222223333333333222111 1 112234444555 Q ss_pred hhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe-----ecccccchhc-ccccccccCCCCCCCCC Q lcl|Aclame:pro 339 YLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL-----ISGDLYPIDT-PLELRKSLKGGDKNVNE 408 (409) Q Consensus 339 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~-----~~~n~~~~~~-~~~~~~~~~gg~~n~~~ 408 (409) -...+..+.++. +.++|+++.--+++.++.-.-+. .+.+- ....+..+.. .........+++.++.+ T Consensus 400 ~~p~~~~e~a~~---~~~~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:95 400 NVMVNDLEQSQI---GAQSQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred CCccCHHHHHHH---HHHcCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 555666666655 45579999999998886533211 11100 0000000000 00000111111111111 No 201 >protein:vir:96266 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1612 # MgeName: ROSA # Cross-refs: genbank:acc:YP_240308;genbank:gi:66395972;genbank:GeneID:5133343 Probab=97.76 E-value=2.2e-05 Score=46.16 Aligned_cols=379 Identities=10% Similarity=0.017 Sum_probs=158.6 Q ss_pred Ccchhhhhhh----hhh------hhcccccCccc-ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENIVTRI----KKK------LIDNWIDQSAS-KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~~~r~----~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) -....++.+. ... +.+-+.+.... ............ ...-.+.-..+......|+..+.-+-+-|+.+ T Consensus 26 ~~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~~i~~~~~~~~~~~~~-~~~~~~~ki~~n~~k~Iv~~~~~yl~g~p~~~ 104 (474) T protein:vir:96 26 ETQEEMIIRLINNHKQKLKDINVGQKYYDKDNDINYQAYKQDLHGNI-DYTKPDWRITTNFHQNLVDQKVSYVAGKPVTY 104 (474) T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchhhhcccc-cccccccccccchHHHHHHhhhhhhcccCcee Confidence 0001111111 000 00101111000 000000000000 00000111123445566777777777778776 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY 147 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~ 147 (409) ...++.....+...+. | ........+..+++.+|.+|..+.++.+|.+ .+..++|..+.+..++. +....+ T Consensus 105 ~~~~~~~~~~l~~~~~---n---~~~~~~~~l~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~~~~a~ 177 (474) T protein:vir:96 105 AHDDDKVLDVIHQVLD---T---RWDNKLIDILTAASNKGIDWLQVYINEDGEL-KLFRVPAEQAIPIWTDKEREQLNAF 177 (474) T ss_pred ccCChHHHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEeeeCCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 5444333333333322 2 3556667778899999999999999888864 67778898888877543 222111 Q ss_pred --EEEcCCCeEE-EEccceEEEecCcCc------------------------------ccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 --SIHAATGNKL-IVHNMDMLHFKHIVA------------------------------SNMVQGISPIDVLKNTTDFDNA 194 (409) Q Consensus 148 --~~~~~~g~~~-~~~~~~vih~~~~~~------------------------------~~~~~G~sp~~~~~~~i~~~~~ 194 (409) .+.......+ .+.++.|.++..... .+...|.|-++.+...++.... T Consensus 178 ir~~~~~~~~~~~vy~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~~~~d~e~v~~liDa~d~ 257 (474) T protein:vir:96 178 IRIFTFNGETKVEYWTAETVTYYVYENGGLIPDFYYGDEHIQTHFSTGSWERVPFIAFKNNPEEVSDIWMYKSFVDAIDK 257 (474) T ss_pred EEEEeecCeeEEEEEeCCeEEEEEEcCCceeeccccccccccCcccccCCCccceEEecCCCCCCCchHHHHHHHHHHHH Confidence 1111111111 233444444321100 0112466666655555543332 Q ss_pred H---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 V---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERV 271 (409) Q Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 271 (409) + .......+..+-. ++ .+ ++.++...+...+. ..+++.++++.+...++....+..+....+...+.| T Consensus 258 ~~S~~~~~~~~~~~p~l-v~-~g--~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I 328 (474) T protein:vir:96 258 RLSDVQNMFDESVELIY-IL-RG--YEGEDLSEFMEGLK-----YYKAINVSSDGGVETIQVEVPVASTKEYLDMMRAYI 328 (474) T ss_pred HHHHHHHHHHHhhcchh-hh-cC--CCcccccchhhhhh-----ccceeeccCCCceeEEeccCCHHHHHHHHHHHHHHH Confidence 2 1222333333321 11 22 12222222222221 234555665655555555545566677788888899 Q ss_pred HHHhcCChhhcCCcccCccccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchh Q lcl|Aclame:pro 272 ANVFQLPSIFLNARSNTNFAKNEE-------------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKS 338 (409) Q Consensus 272 a~~fgvp~~~l~~~~~~~~~~~e~-------------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~ 338 (409) +..-++|..-.... .++ .+..+ ..+..+...+...++.+...++. . .....+.+.+.. T Consensus 329 ~~~s~~p~~~~~~~-~~n-~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~~~~i~~~~g~-----~--~d~~~i~i~f~~ 399 (474) T protein:vir:96 329 VEFGQGVDFQTDKF-GSA-TSGIALKFLYTNLNLKANKLKNKANVALQELMQFILDFNKI-----K--LDAKEIEITFNF 399 (474) T ss_pred HHHhCCcCcccccc-ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C--cccceeeEEecC Confidence 99999885443221 111 11111 12222223333333333222111 1 112234444555 Q ss_pred hhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe-----ecccccchhc-ccccccccCCCCCCCCC Q lcl|Aclame:pro 339 YLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL-----ISGDLYPIDT-PLELRKSLKGGDKNVNE 408 (409) Q Consensus 339 l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~-----~~~n~~~~~~-~~~~~~~~~gg~~n~~~ 408 (409) -...+..+.++. +.++|+++.--+++.++.-.-+. .+.+- ....+..+.. .........+++.++.+ T Consensus 400 ~~p~~~~e~a~~---~~~~giiS~et~~~~lp~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 474 (474) T protein:vir:96 400 NVMVNDLEQSQI---GAQSQYLSKETLVRHHPWVDDPKAELERLDEEQLELNKQLPNLDDGGADGAQQQQQSENNQSK 474 (474) T ss_pred CCccCHHHHHHH---HHHcCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccCCCCCCcCCCCccccC Confidence 555666666655 45579999999998886533211 11100 0000000000 00000111111111111 No 202 >protein:vir:97447 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1676 # MgeName: 92 # Cross-refs: genbank:acc:YP_240744;genbank:gi:66396413;genbank:GeneID:5133803 Probab=97.69 E-value=2.8e-05 Score=45.57 Aligned_cols=380 Identities=10% Similarity=-0.005 Sum_probs=157.0 Q ss_pred Ccch-----hhhhhhhh----h------hhcccccCccc-ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MAKE-----NIVTRIKK----K------LIDNWIDQSAS-KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMAS 64 (409) Q Consensus 1 M~~~-----~~~~r~~~----~------~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 64 (409) |... .++.++.. + ...-+.+.... ............ .......-..++....+|+..+.-+-. T Consensus 21 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~-~~~~~~~ki~~n~~k~Ivd~~~~~l~g 99 (474) T protein:vir:97 21 LKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNI-DYDKPDWRITTNFHQNLVDQKVSYVAS 99 (474) T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhcccccc-ccccCcceeecchHHHHHHHHHhhhhc Confidence 1111 11111100 0 00111111000 000000000000 000001112234556677777777777 Q ss_pred CceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--c Q lcl|Aclame:pro 65 LPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--S 142 (409) Q Consensus 65 lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~ 142 (409) -|+.+...++.....+... .. | ........+..+.+.+|.+|..+..+.+|.+ .+..++|..+.+..++. + T Consensus 100 ~p~~~~~~d~~~~~~l~~~-~~--n---~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~ 172 (474) T protein:vir:97 100 KPVTYSCEDENVLKVIHDV-LD--T---RWDNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKERE 172 (474) T ss_pred CCceeccCcHHHHHHHHHH-Hh--c---cHHHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCC Confidence 7877654443332222222 21 2 2455666677899999999999988888864 57778898888887653 2 Q ss_pred ceeEEE--EEcCCCeE-EEEccceEEEecCcC--------------------------c----ccccccccHHHHHHHHH Q lcl|Aclame:pro 143 RELYYS--IHAATGNK-LIVHNMDMLHFKHIV--------------------------A----SNMVQGISPIDVLKNTT 189 (409) Q Consensus 143 ~~~~~~--~~~~~g~~-~~~~~~~vih~~~~~--------------------------~----~~~~~G~sp~~~~~~~i 189 (409) ...... +...+... ..+.++.+.+++... | .+...|.|-++.+...+ T Consensus 173 ~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~li 252 (474) T protein:vir:97 173 ELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSII 252 (474) T ss_pred ceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHHH Confidence 221111 11111111 112333333322100 0 01125677666666655 Q ss_pred HHHHHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 190 DFDNAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENL 266 (409) Q Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~ 266 (409) +....+... ....++.+-. ++ .+.... +.+.+.... ...+++.++++.+...++.......+.+..+. T Consensus 253 Da~n~~~s~~~~~~~~~~~~~l-v~-~g~~~~--~~~~~~~~~-----~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (474) T protein:vir:97 253 DAIDKRLSDAQNMFDESVELIY-IL-KGYEGE--DLEEFMRGL-----KYYKAINVDGDGGVETIQVEVPVSSTKEYIDL 323 (474) T ss_pred HHHHHHHHHHHHHHHHhcCcee-ee-ecCCcc--cchhhhhhh-----hccceeeccCCCceeEEeecCCHHHHHHHHHH Confidence 543332222 2333333322 22 222211 111121111 13456666666665555554455556667777 Q ss_pred HHHHHHHHhcCChhhcCCcccCcccc--HH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEe Q lcl|Aclame:pro 267 TRERVANVFQLPSIFLNARSNTNFAK--NE----------ELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKF 334 (409) Q Consensus 267 ~~~~Ia~~fgvp~~~l~~~~~~~~~~--~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~ 334 (409) ..+.|...-++|..-.... .++-|. .+ +.....+...+...++.+.+.++.+ .....+.+ T Consensus 324 l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~-------~d~~~i~v 395 (474) T protein:vir:97 324 MRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLK-------TDVKDIEI 395 (474) T ss_pred HHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------cccceeeE Confidence 7888888888875332211 111111 11 1122233334444444433322211 11222444 Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCEEe-----ecccccchhccccc-ccccCCCCCCC Q lcl|Aclame:pro 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDKPL-----ISGDLYPIDTPLEL-RKSLKGGDKNV 406 (409) Q Consensus 335 d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~~~-----~~~n~~~~~~~~~~-~~~~~gg~~n~ 406 (409) .+..-...+..+.++ .+.++|+++..-++++++.-+-+ ..+.+. ......+++..... ....++.+..+ T Consensus 396 ~f~~~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (474) T protein:vir:97 396 SFNFNRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKE 472 (474) T ss_pred EeccCcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccc Confidence 444444455555554 45667999998898888653211 011000 00011111111000 00011111111 Q ss_pred CC Q lcl|Aclame:pro 407 NE 408 (409) Q Consensus 407 ~~ 408 (409) .| T Consensus 473 ~e 474 (474) T protein:vir:97 473 SE 474 (474) T ss_pred cC Confidence 11 No 203 >protein:vir:94498 Length: 474 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1508 # MgeName: 88 # Cross-refs: genbank:acc:YP_240672;genbank:gi:66396340;genbank:GeneID:5133762 Probab=97.69 E-value=2.8e-05 Score=45.57 Aligned_cols=380 Identities=10% Similarity=-0.005 Sum_probs=157.0 Q ss_pred Ccch-----hhhhhhhh----h------hhcccccCccc-ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MAKE-----NIVTRIKK----K------LIDNWIDQSAS-KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMAS 64 (409) Q Consensus 1 M~~~-----~~~~r~~~----~------~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 64 (409) |... .++.++.. + ...-+.+.... ............ .......-..++....+|+..+.-+-. T Consensus 21 ~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~YY~g~~~i~~~~~~~~~~~~~-~~~~~~~ki~~n~~k~Ivd~~~~~l~g 99 (474) T protein:vir:94 21 LKPQFETQEEMIVRLIDDHRKQLDKITVGQRYYDKDNDIVKQMKKVDVHGNI-DYDKPDWRITTNFHQNLVDQKVSYVAS 99 (474) T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhcccchhcccccc-ccccCcceeecchHHHHHHHHHhhhhc Confidence 1111 11111100 0 00111111000 000000000000 000001112234556677777777777 Q ss_pred CceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--c Q lcl|Aclame:pro 65 LPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--S 142 (409) Q Consensus 65 lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~ 142 (409) -|+.+...++.....+... .. | ........+..+.+.+|.+|..+..+.+|.+ .+..++|..+.+..++. + T Consensus 100 ~p~~~~~~d~~~~~~l~~~-~~--n---~~~~~~~e~~~~~~~~G~~~~~~~~d~~~~~-~i~~~~p~~~~~v~d~~~~~ 172 (474) T protein:vir:94 100 KPVTYSCEDENVLKVIHDV-LD--T---RWDNKLIDILTATSNKGIDWLQVYINENGEM-KLFRVPAEQAIPIWVDKERE 172 (474) T ss_pred CCceeccCcHHHHHHHHHH-Hh--c---cHHHHHHHHHHHHhhcCceEEEEEecCCCee-EEEEEcccceEEEEcCCCCC Confidence 7877654443332222222 21 2 2455666677899999999999988888864 57778898888887653 2 Q ss_pred ceeEEE--EEcCCCeE-EEEccceEEEecCcC--------------------------c----ccccccccHHHHHHHHH Q lcl|Aclame:pro 143 RELYYS--IHAATGNK-LIVHNMDMLHFKHIV--------------------------A----SNMVQGISPIDVLKNTT 189 (409) Q Consensus 143 ~~~~~~--~~~~~g~~-~~~~~~~vih~~~~~--------------------------~----~~~~~G~sp~~~~~~~i 189 (409) ...... +...+... ..+.++.+.+++... | .+...|.|-++.+...+ T Consensus 173 ~~~~~ir~~~~~~~~~~~~yt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~li 252 (474) T protein:vir:94 173 ELKSFIRYYKFNNEEKVEFWTDTTVTYYVLENGGLIPDYYYGANHVQSHFSNGNWGRVPFIAFKNNPEEVSDIWMYKSII 252 (474) T ss_pred ceEEEEEEEEecCeEEEEEEeCCeEEEEEEcCCccccccccCcCcccccccccCCCccceEEecCCcCCCCcHHHHHHHH Confidence 221111 11111111 112333333322100 0 01125677666666655 Q ss_pred HHHHHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 190 DFDNAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENL 266 (409) Q Consensus 190 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~ 266 (409) +....+... ....++.+-. ++ .+.... +.+.+.... ...+++.++++.+...++.......+.+..+. T Consensus 253 Da~n~~~s~~~~~~~~~~~~~l-v~-~g~~~~--~~~~~~~~~-----~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~ 323 (474) T protein:vir:94 253 DAIDKRLSDAQNMFDESVELIY-IL-KGYEGE--DLEEFMRGL-----KYYKAINVDGDGGVETIQVEVPVSSTKEYIDL 323 (474) T ss_pred HHHHHHHHHHHHHHHHhcCcee-ee-ecCCcc--cchhhhhhh-----hccceeeccCCCceeEEeecCCHHHHHHHHHH Confidence 543332222 2333333322 22 222211 111121111 13456666666665555554455556667777 Q ss_pred HHHHHHHHhcCChhhcCCcccCcccc--HH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEe Q lcl|Aclame:pro 267 TRERVANVFQLPSIFLNARSNTNFAK--NE----------ELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKF 334 (409) Q Consensus 267 ~~~~Ia~~fgvp~~~l~~~~~~~~~~--~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~ 334 (409) ..+.|...-++|..-.... .++-|. .+ +.....+...+...++.+.+.++.+ .....+.+ T Consensus 324 l~~~I~~~s~~p~~~~~~~-~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~-------~d~~~i~v 395 (474) T protein:vir:94 324 MRVYIMEFGQGVDFQTDKF-GSAPSGIALKFLYGNLDLKANKLKNKATVAIQELISFIIDFNNLK-------TDVKDIEI 395 (474) T ss_pred HHHHHHHHhCccccCcccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------cccceeeE Confidence 7888888888875332211 111111 11 1122233334444444433322211 11222444 Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC--CCCEEe-----ecccccchhccccc-ccccCCCCCCC Q lcl|Aclame:pro 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE--GGDKPL-----ISGDLYPIDTPLEL-RKSLKGGDKNV 406 (409) Q Consensus 335 d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~--~gd~~~-----~~~n~~~~~~~~~~-~~~~~gg~~n~ 406 (409) .+..-...+..+.++ .+.++|+++..-++++++.-+-+ ..+.+. ......+++..... ....++.+..+ T Consensus 396 ~f~~~~p~~~~e~a~---~~~~~g~iS~et~l~~l~~v~D~~~E~eri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (474) T protein:vir:94 396 SFNFNRMMNDAEQSQ---IIAQSQYLSRETLVKSSPLVDDYKAELERIEQEQMEYNKQLPNLDDGGADGAQQQEGSNNKE 472 (474) T ss_pred EeccCcccCHHHHHH---HHHHcCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCCCCcccCCCCcccc Confidence 444444455555554 45667999998898888653211 011000 00011111111000 00011111111 Q ss_pred CC Q lcl|Aclame:pro 407 NE 408 (409) Q Consensus 407 ~~ 408 (409) .| T Consensus 473 ~e 474 (474) T protein:vir:94 473 SE 474 (474) T ss_pred cC Confidence 11 No 204 >protein:vir:96240 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1607 # MgeName: 69 # Cross-refs: genbank:acc:YP_239567;genbank:gi:66395299;genbank:GeneID:5132789 Probab=97.68 E-value=3e-05 Score=45.41 Aligned_cols=392 Identities=10% Similarity=0.064 Sum_probs=165.5 Q ss_pred Ccch---hhhhhhhhh-------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE---NIVTRIKKK-------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~---~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |-.. +++++.... +.+-+.+... -+..... ....+.+ +.-..+......++..+.-+-+-|+.+. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~-i~~~~~~-~~~~~~~---~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:96 40 QNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTK-NLVELTR-RKEEYMA---DNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCc-cccccCc-CcccccC---cceeecchHHHHHHHHHhhhccCCceee Confidence 1110 111111100 0111111100 0000000 0000110 1112234455566767766667777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee--- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL--- 145 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~--- 145 (409) ..++.....+..++. .-........+..+++.+|.+|.++.++.+|. ..+.+++|..+.+..++.. ... T Consensus 115 ~~~~~~~~~l~~~~~-----~n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~-~~i~~~~p~~~~~vydd~~~~~~~~~v 188 (511) T protein:vir:96 115 DDDKDVLEAIEAFND-----LNDVESHNRSLGLDLSIYGKAYELMIRNQDDE-TRLYKSDAMSTFVIYDNTIERNSIAGV 188 (511) T ss_pred cCchHHHHHHHHHHh-----hcCHHHHHHHHHHHHHhcCeeEEEEEeCCCCc-eEEEEEccceeEEEEcCCCCCceEEEE Confidence 433322222222222 12355667778889999999999999988876 4677889998888876543 111 Q ss_pred -EEEEEcCCC---e---E-EEEccceEEEecCcCc-------------------------ccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 146 -YYSIHAATG---N---K-LIVHNMDMLHFKHIVA-------------------------SNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 146 -~~~~~~~~g---~---~-~~~~~~~vih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~ 192 (409) +|......+ . . ..+.++.+.++..... .+...|.|-++.+...++.. T Consensus 189 r~~~~~~~d~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vPvv~~~nn~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:96 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCCceeeEEecCCCCCCCchhhhHHHHHHH Confidence 121111111 0 0 1234444444421100 01124677777666666544 Q ss_pred HHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcC----CCceeecCCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 193 NAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEE----NGGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 193 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ..+... ....++.+ ..++......+.++....++.-.-.... .+...-.+++.++.-++.......+....+ T Consensus 269 d~~~S~~~~~~~~~~~~-~lv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~ 347 (511) T protein:vir:96 269 DNAESDTANYMSDLNDA-MLLIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKD 347 (511) T ss_pred HHHHHHHHHHHHHhhCc-eeeeecCccCCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHH Confidence 332221 22233322 2222222223333333222211100000 111111234555555555545566677788 Q ss_pred HHHHHHHHHhcCChhhcCCcccCccc--cHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEE Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARSNTNFA--KNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFK 333 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~~~~~~--~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~ 333 (409) ...+.|+..-++|..-.+... ++-| .... .....+...+.-.++.|...+..+--... ...-..++ T Consensus 348 ~L~~~I~~~s~~p~~~~~~~~-~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~~~~-~~d~~~i~ 425 (511) T protein:vir:96 348 RLNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTWSIDA-NKDFNTVR 425 (511) T ss_pred HHHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-ccccccce Confidence 888899999999875443221 2211 1111 11222233333333333333322111000 01112345 Q ss_pred ecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe------ecccccchhcccc----cccccC- Q lcl|Aclame:pro 334 FNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL------ISGDLYPIDTPLE----LRKSLK- 400 (409) Q Consensus 334 ~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~------~~~n~~~~~~~~~----~~~~~~- 400 (409) +.+..-...|..+.++.+.++ .|+++.-.+.+++++-.-+. .+.+. +............ .+...+ T Consensus 426 ~~f~~~~p~n~~e~~~~~~kl--~G~iS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:96 426 YVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRDINDDEQDDDT 503 (511) T ss_pred EEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCcc Confidence 555666777889999988887 68999988888886533211 11000 0000000000000 000000 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 401 GGDKNVNE 408 (409) Q Consensus 401 gg~~n~~~ 408 (409) ..+.++++ T Consensus 504 ~~~~~~~~ 511 (511) T protein:vir:96 504 KDTVDKKE 511 (511) T ss_pred cccccccC Confidence 00001111 No 205 >protein:vir:97171 Length: 512 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1654 # MgeName: 85 # Cross-refs: genbank:acc:YP_239722;genbank:gi:66394876;genbank:GeneID:5130904 Probab=97.61 E-value=3.8e-05 Score=44.80 Aligned_cols=391 Identities=10% Similarity=0.076 Sum_probs=164.4 Q ss_pred Ccch---hhhhhhhhh-------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE---NIVTRIKKK-------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~---~~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |... +++++.... +.+-+.+.... +..... ....+. .+.-.........|+..+.-+-+-|+.+. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~~YY~g~~~i-~~~~~~-~~~~~~---~~~ki~~n~~k~Ivd~~~~yl~g~p~~~~ 114 (512) T protein:vir:97 40 QNINEVSKYIEHHMDYQRPRLKVLSDYYEGKTKN-LVELTR-RKEEYM---ADNRVAHDYASYISDFINGYFLGNPIQCQ 114 (512) T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHhcccCcc-ccccCc-cccccc---CcceeecchHHHHHHHHhhhhcccCceec Confidence 1100 111111110 11111111100 000000 000000 01112234455566777776777777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee--- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL--- 145 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~--- 145 (409) ..++.....+..++. .-........+..+++.+|.||.++.++.+|.+ .+..++|..+.+..++.. ... T Consensus 115 ~~d~~~~~~l~~~~~-----~n~~~~~~~~~~~~~~i~G~ay~~vy~ded~~~-~i~~~~p~~~~~iyd~~~~~~~~~~v 188 (512) T protein:vir:97 115 DDDKDVLEAIEAFND-----LNDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGV 188 (512) T ss_pred cCChHHHHHHHHHHh-----hcCHHHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 443332222222222 124556667788899999999999999888864 578899998888877543 211 Q ss_pred -EEEEEcCCC---e---E-EEEccceEEEecCcC---------------------c----ccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 146 -YYSIHAATG---N---K-LIVHNMDMLHFKHIV---------------------A----SNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 146 -~~~~~~~~g---~---~-~~~~~~~vih~~~~~---------------------~----~~~~~G~sp~~~~~~~i~~~ 192 (409) +|......+ . . ..+.++.|.+++... | .+...|.|-++.+...++.. T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~gd~e~v~~liDa~ 268 (512) T protein:vir:97 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (512) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccccCcccceEeecCCCCCCCchhhhHHHHHHH Confidence 121111111 0 1 123455555543211 0 01124677777666666544 Q ss_pred HHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhc-----CCCceeecCCCceeeeccCChhhHHHHHHH Q lcl|Aclame:pro 193 NAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYE-----ENGGILFQEPGVEIEPLPKKYVSEDIVASE 264 (409) Q Consensus 193 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~ 264 (409) ..+... ....+..+ ..++......++++....+....-... +.....-.++|.+++-++.......+.... T Consensus 269 d~~~S~~~~~~~~~~~~-~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~ 347 (512) T protein:vir:97 269 DNAESDTANYMSDLNDA-MLLIKGNLNLDPVEVRKQKEANVLFLEPTVYENRDTGIETEGSVDGGYIYKQYDVQGTEAYK 347 (512) T ss_pred HHHHHHHHHHHHHhcCc-eeeeecCccCCchhhhhhhhcccccccccchhhcccccCCCCCcceEEEeecCCHHHHHHHH Confidence 433222 22333322 222222222333333333221111111 111111234556665565544555566777 Q ss_pred HHHHHHHHHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccce Q lcl|Aclame:pro 265 NLTRERVANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRY 331 (409) Q Consensus 265 ~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~ 331 (409) +...+.|+..-++|..-.+... ++- +.++. ....+...+.-.++.+...++..--.. ....-.. T Consensus 348 ~~L~~~I~~~s~~p~~~~~~~~-gn~-Sg~Al~~~~~~l~~ka~~k~~~f~~~l~~~~~li~~~~~~~~~~~-~~~d~~~ 424 (512) T protein:vir:97 348 DRLNSDIHMFTNTPNMKDDNFS-GTQ-SGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-ANKDFNT 424 (512) T ss_pred HHHHHHHHHHhCCcccCccccc-ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccccccc Confidence 7888889988888875543221 221 11111 112222222222222222222110000 0011112 Q ss_pred EEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe------ecccccchhcccccccccCCCC Q lcl|Aclame:pro 332 FKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL------ISGDLYPIDTPLELRKSLKGGD 403 (409) Q Consensus 332 ~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~------~~~n~~~~~~~~~~~~~~~gg~ 403 (409) +.+.+..-...+..+.++.+.++ .|+++..-++++++.-+-+. .+.+- +.....+....... ...+..+ T Consensus 425 i~~~f~~~~p~~~~e~~~~~~kl--~giiS~et~~~~l~~v~d~~~E~eri~~E~~~~~~~~~~~~~~~~~~-~~~~~~~ 501 (512) T protein:vir:97 425 VRYVYNRNLPKSLIEELKAYIDS--GGKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKGIYKDPRD-INDDEQD 501 (512) T ss_pred ceEEeCCCCCcCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CCCCCCC Confidence 44555566677888888988888 48899888888876532111 11000 00000000000000 0000000 Q ss_pred CCCCCC Q lcl|Aclame:pro 404 KNVNES 409 (409) Q Consensus 404 ~n~~~~ 409 (409) ++.+++ T Consensus 502 ~~~~~~ 507 (512) T protein:vir:97 502 DDTKDT 507 (512) T ss_pred CCcccc Confidence 000001 No 206 >protein:vir:96366 Length: 511 # NCBI annotation: ORF006 # Family: family:all:125 # MgeID: mge:1613 # MgeName: 53 # Cross-refs: genbank:acc:YP_239644;genbank:gi:66395376;genbank:GeneID:5132842 Probab=97.59 E-value=4e-05 Score=44.70 Aligned_cols=392 Identities=10% Similarity=0.064 Sum_probs=160.9 Q ss_pred Ccch---hhhhhhhh----h---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE---NIVTRIKK----K---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~---~~~~r~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) +-.. +++++... + +.+-+.+.. .-+..... ....+. .+.-..+......|+..+.-+-+-|+.+. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~-~il~~~~~-~~~~~~---~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:96 40 QNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKT-KNLVELTR-RKEEYM---ADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred cCHHHHHHHHHHHHHhhhHHHHHHHHHhhccC-ccccccCc-cccccc---CcceeecchHHHHHHHHhhhhcccCceee Confidence 1110 11111100 0 010111110 00000000 000000 01112234455566666666666777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee--- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL--- 145 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~--- 145 (409) ..++.....+..++.. -....+...+..+++.+|.||.++.++.+|.+ .+..++|..+.+..++.. ... T Consensus 115 ~~d~~~~~~l~~~~~~-----n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~v 188 (511) T protein:vir:96 115 DDDKDVLEAIEAFNDL-----NDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGV 188 (511) T ss_pred cCchHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 3333222222222221 23455667788899999999999999888864 577889988888876543 221 Q ss_pred -EEEEEcCCC---e---E-EEEccceEEEecCcCc-------------------------ccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 146 -YYSIHAATG---N---K-LIVHNMDMLHFKHIVA-------------------------SNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 146 -~~~~~~~~g---~---~-~~~~~~~vih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~ 192 (409) +|......+ . . ..+.++.+.++..... .+...|.|-++.+...++.. T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:96 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHH Confidence 122111111 1 1 1234555555432110 01124677666666655543 Q ss_pred HHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCC----CceeecCCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 193 NAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEEN----GGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 193 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ..+. ......++.+ ..+++.....+.++....++...-..... ....-..++.++.-++.......+....+ T Consensus 269 ~~~~S~~~~~~~~~~~~-~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~ 347 (511) T protein:vir:96 269 DNAESDTANYMSDLNDA-MLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKD 347 (511) T ss_pred HHHHHHHHHHHHHhhcc-hhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHH Confidence 3322 1123333332 22222222233333333222111000000 00001122344444444444555677778 Q ss_pred HHHHHHHHHhcCChhhcCCcc-cCccccHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEe Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARS-NTNFAKNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKF 334 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~-~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~ 334 (409) ...+.|+..-++|..-.+... +.++...+. .....+...+.-.++.|...+...--.. ....-..+++ T Consensus 348 ~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~-~~~~~~~i~~ 426 (511) T protein:vir:96 348 RLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-ANKDFNTVRY 426 (511) T ss_pred HHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccccceE Confidence 888899999999875443321 111111111 1122222233333333333222211000 0011123455 Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeec-ccccchhcccccccccCCCC-------- Q lcl|Aclame:pro 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLIS-GDLYPIDTPLELRKSLKGGD-------- 403 (409) Q Consensus 335 d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~-~n~~~~~~~~~~~~~~~gg~-------- 403 (409) .+..-...+..+.++.+.++. |+++..-+.+++++-+-+. .+.+--- ....+..... .....++.+ T Consensus 427 ~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:96 427 VYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKG-IYKDPRDINDDEQDDDT 503 (511) T ss_pred EeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCCCCCCc Confidence 566667788899999988884 7898877888775432110 1100000 0000000000 000001100 Q ss_pred ---CCCCC Q lcl|Aclame:pro 404 ---KNVNE 408 (409) Q Consensus 404 ---~n~~~ 408 (409) .+++| T Consensus 504 ~~~~~e~~ 511 (511) T protein:vir:96 504 KDTVDKKE 511 (511) T ss_pred cCcccccC Confidence 11111 No 207 >protein:vir:78805 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1858 # MgeName: 80alpha # Cross-refs: genbank:acc:YP_001285356;genbank:gi:148717884;genbank:GeneID:5246936 Probab=97.59 E-value=4e-05 Score=44.70 Aligned_cols=392 Identities=10% Similarity=0.064 Sum_probs=160.9 Q ss_pred Ccch---hhhhhhhh----h---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKE---NIVTRIKK----K---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~---~~~~r~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) +-.. +++++... + +.+-+.+.. .-+..... ....+. .+.-..+......|+..+.-+-+-|+.+. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~-~il~~~~~-~~~~~~---~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~ 114 (511) T protein:vir:78 40 QNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKT-KNLVELTR-RKEEYM---ADNRVAHDYASYISDFINGYFLGNPIQYQ 114 (511) T ss_pred cCHHHHHHHHHHHHHhhhHHHHHHHHHhhccC-ccccccCc-cccccc---CcceeecchHHHHHHHHhhhhcccCceee Confidence 1110 11111100 0 010111110 00000000 000000 01112234455566666666666777764 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee--- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL--- 145 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~--- 145 (409) ..++.....+..++.. -....+...+..+++.+|.||.++.++.+|.+ .+..++|..+.+..++.. ... T Consensus 115 ~~d~~~~~~l~~~~~~-----n~~~~~~~~~~~~~~~~G~a~~~vy~d~dg~~-~i~~~~p~~~~~v~dd~~~~~~~~~v 188 (511) T protein:vir:78 115 DDDKDVLEAIEAFNDL-----NDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFIIYDNTVERNSIAGV 188 (511) T ss_pred cCchHHHHHHHHHHhh-----cChhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEcccceEEEEcCCCCCceEEEE Confidence 3333222222222221 23455667788899999999999999888864 577889988888876543 221 Q ss_pred -EEEEEcCCC---e---E-EEEccceEEEecCcCc-------------------------ccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 146 -YYSIHAATG---N---K-LIVHNMDMLHFKHIVA-------------------------SNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 146 -~~~~~~~~g---~---~-~~~~~~~vih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~ 192 (409) +|......+ . . ..+.++.+.++..... .+...|.|-++.+...++.. T Consensus 189 r~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~gd~e~v~~liDa~ 268 (511) T protein:vir:78 189 RYLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTNRTNGLKLTPRENSFESHSFERMPITEFSNNERRKGDYEKVITLIDLY 268 (511) T ss_pred EEEEeeeccccccceEEEEEEEeCCcEEEEEecCCCcccccccccccccCcCcccceEEecCCCCCCCchhhhHHHHHHH Confidence 122111111 1 1 1234555555432110 01124677666666655543 Q ss_pred HHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCC----CceeecCCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 193 NAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEEN----GGILFQEPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 193 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ..+. ......++.+ ..+++.....+.++....++...-..... ....-..++.++.-++.......+....+ T Consensus 269 ~~~~S~~~~~~~~~~~~-~lv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~~ 347 (511) T protein:vir:78 269 DNAESDTANYMSDLNDA-MLLIKGNLNLDPVEVRKQKEANVLFLEPTVYVDAEGRETEGSVDGGYIYKQYDVQGTEAYKD 347 (511) T ss_pred HHHHHHHHHHHHHhhcc-hhheecCccCCchhhcccccccceeccccceeccccccCCCCcceeEEeecCCHHHHHHHHH Confidence 3322 1123333332 22222222233333333222111000000 00001122344444444444555677778 Q ss_pred HHHHHHHHHhcCChhhcCCcc-cCccccHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEe Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARS-NTNFAKNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKF 334 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~-~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~ 334 (409) ...+.|+..-++|..-.+... +.++...+. .....+...+.-.++.|...+...--.. ....-..+++ T Consensus 348 ~L~~~I~~~s~~P~~~~~~~~~n~Sg~Al~~~~~~l~~ka~~~~~~f~~~l~~~~~li~~~~~~~~~~~-~~~~~~~i~~ 426 (511) T protein:vir:78 348 RLNSDIHMFTNTPNMKDDNFSGTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-ANKDFNTVRY 426 (511) T ss_pred HHHHHHHHHhCCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cccccccceE Confidence 888899999999875443321 111111111 1122222233333333333222211000 0011123455 Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEeec-ccccchhcccccccccCCCC-------- Q lcl|Aclame:pro 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLIS-GDLYPIDTPLELRKSLKGGD-------- 403 (409) Q Consensus 335 d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~~-~n~~~~~~~~~~~~~~~gg~-------- 403 (409) .+..-...+..+.++.+.++. |+++..-+.+++++-+-+. .+.+--- ....+..... .....++.+ T Consensus 427 ~f~~~~p~n~~e~~d~~~kl~--G~iS~et~l~~l~~v~d~~~El~ri~~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 503 (511) T protein:vir:78 427 VYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKG-IYKDPRDINDDEQDDDT 503 (511) T ss_pred EeCCCCCcCHHHHHHHHHHHh--ccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc-cccCCCCCCCCCCCCCc Confidence 566667788899999988884 7898877888775432110 1100000 0000000000 000001100 Q ss_pred ---CCCCC Q lcl|Aclame:pro 404 ---KNVNE 408 (409) Q Consensus 404 ---~n~~~ 408 (409) .+++| T Consensus 504 ~~~~~e~~ 511 (511) T protein:vir:78 504 KDTVDKKE 511 (511) T ss_pred cCcccccC Confidence 11111 No 208 >protein:vir:1236 Length: 483 # NCBI annotation: similar to phage Spp1 gp6 (portal protein) # Family: family:all:125 # MgeID: mge:25 # MgeName: phi ETA # Cross-refs: genbank:acc:NP_510935;genbank:gi:17426269;genbank:GeneID:927380 Probab=97.55 E-value=4.7e-05 Score=44.33 Aligned_cols=382 Identities=10% Similarity=0.004 Sum_probs=165.5 Q ss_pred Ccchhhhhhhhhh----------hhcccccCcccccccccc-cCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENIVTRIKKK----------LIDNWIDQSASKLYDFSP-WKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~~~r~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) +....++.+.-+. +..-+.+.... +..... .........-.+.-..++....+|+..+.-+-.-|+.+ T Consensus 34 e~~~~~i~~~i~~~~~~~~r~~~l~~YY~g~~~i-~~~~~~~~~~~~~~~~~~~~ki~~n~~k~Ivd~~~~~l~G~p~~~ 112 (483) T protein:vir:12 34 ETLEEMIVRYIKQHLEKLPEISIGQEYYEQRPDI-VKEPKPVDATGAVDPLKPDDRMITNFHANLVDQKVSYIVGKPIAF 112 (483) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-ccccccccccccccccccccccccchHHHHHHHHhhhhcccCcee Confidence 1111222211110 00111111000 000000 00000001011111234566677787777777777776 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY 147 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~ 147 (409) ...++.....+...+. | ........+..+++.+|.+|..+..+.+|.+ .+..++|..+.+..++. +..... T Consensus 113 ~~~d~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~y~~v~~d~d~~~-~i~~~~p~~~~~v~d~~~~~~~~~~ 185 (483) T protein:vir:12 113 KHTDDEVVKRIDEVLG---N---RFDDKLHSVLTGASNKGIEWLHPYLDEEGEF-KLFRVPAEQGIPIWTDKEHEELEAF 185 (483) T ss_pred ccCChHHHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEEEEcCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 4433322222222222 2 2344556677889999999999999888875 57788999888877643 222111 Q ss_pred --EEEc-CCCeEEEEccceEEEecCc---------------------C-----c----ccccccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 148 --SIHA-ATGNKLIVHNMDMLHFKHI---------------------V-----A----SNMVQGISPIDVLKNTTDFDNA 194 (409) Q Consensus 148 --~~~~-~~g~~~~~~~~~vih~~~~---------------------~-----~----~~~~~G~sp~~~~~~~i~~~~~ 194 (409) .+.. .......+.+..+.|+... + | .+...|.|-++.+...++.... T Consensus 186 ir~~~~~~~~~~~~y~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d~ 265 (483) T protein:vir:12 186 IRMYKLENETKVEYWDKVTVNYYVYENGSLIPDYSNNLENSKTHFSTGSWGKIPFIPFKNNDLEISDIFMYKTLIDAYNR 265 (483) T ss_pred EEEEEeecceEEEEEecCeEEEEEEeCCeeeecccccccccccccccCCCCccceEEecCCCCCCCchhhHHHHHHHHHH Confidence 1111 1111122333333333110 0 0 0112466766666655543332 Q ss_pred H---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHH Q lcl|Aclame:pro 195 V---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERV 271 (409) Q Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~I 271 (409) + .......++.+.. +++ + .+.++....+..+. ..+++-++++.+...+.....+..+....+...+.| T Consensus 266 ~~S~~~~~~~~~~~~~l-v~~-g--~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I 336 (483) T protein:vir:12 266 RLSDLSNTFKDSNELTY-VLT-N--YDDQELPEFKRLLR-----YYGAIKVSDNGGVDTIQVEVPVENSKKYLDELYQKI 336 (483) T ss_pred HHHHHHHHHHHhcCcee-eee-c--CCcccchhHHHhhh-----hccccccCCCCcceEEeecCCHHHHHHHHHHHHHHH Confidence 2 2222344444432 222 2 12222222222221 223444444545444544445556677778888889 Q ss_pred HHHhcCChhhcCCcc-cCccccHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhh Q lcl|Aclame:pro 272 ANVFQLPSIFLNARS-NTNFAKNE----------ELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYL 340 (409) Q Consensus 272 a~~fgvp~~~l~~~~-~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~ 340 (409) +..-++|..-.+... +.++...+ +.....+...+...++.+...++.+ .....+.+.+.... T Consensus 337 ~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~~~~~f~~~l~~~~~li~~~~~~~-------~~~~~i~v~f~~~~ 409 (483) T protein:vir:12 337 MLFGQAVDFSSDKFGSAPSGVALEFLYTNLNLKADKLARKAKVAIQELLWFVFEHFDIK-------GEHKDVDISFNYNK 409 (483) T ss_pred HHHhCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CccceeeEEeCCCC Confidence 999888865442211 11111111 1122223333333333333332211 12334556666777 Q ss_pred hhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEee-----cccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 341 RADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPLI-----SGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 341 ~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~~-----~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) ..|..+.++.+.++ .|+++..-++++++.-+-+. .+.+.- .....++..... .......+.+++++ T Consensus 410 p~~~~~~a~~~~kl--~GiiS~et~~~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~-d~~~~~~~~~~~e~ 482 (483) T protein:vir:12 410 VANTELQVQTAQQS--MGIVSHETVLENHPFVEDLQAELERIEQEQMEYNKQLPNLDDGGA-DGAQQQERSNNKES 482 (483) T ss_pred CCCHHHHHHHHHHH--hccCchHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccccccccc-CCcccCCCCCcccC Confidence 88899999999988 58999988888886532111 110000 000000000000 00011111122222 No 209 >protein:vir:733 Length: 453 # NCBI annotation: minor structural protein 1 # Family: family:all:125 # MgeID: mge:14 # MgeName: Tuc2009 # Cross-refs: genbank:acc:NP_108710;genbank:gi:13487832;genbank:GeneID:920851 Probab=97.50 E-value=5.6e-05 Score=43.90 Aligned_cols=379 Identities=13% Similarity=0.095 Sum_probs=164.4 Q ss_pred Ccch-----hhhhhhhh-------h---hhcccccCcccccccccccCCC-CccccchhHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MAKE-----NIVTRIKK-------K---LIDNWIDQSASKLYDFSPWKNK-SFWGVINNTLETNETIFSAITKLSNSMAS 64 (409) Q Consensus 1 M~~~-----~~~~r~~~-------~---~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~v~~~i~~ia~~ia~ 64 (409) |... +.+.++-+ + +.+-+.+.. .+...... ... .+.-...+.....|+..+.-+-. T Consensus 11 ~~~~~~~~~~~i~~~i~~~~~~~~r~~~~~~yy~g~~-----~i~~~~~~~~~~---~~~ki~~n~~~~ivd~~~~~l~g 82 (453) T protein:vir:73 11 YSRDEEITDKVVNDFMKKHQEEVERYEYLGNMYKGIM-----EISSQKAKDSWK---PDNRLTNNFAKYIVDTFVGYFNG 82 (453) T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----chhcCCCCCccC---ccceeecchHHHHHHHhhhhhcc Confidence 1110 11111100 0 001111110 00000000 000 01112234555566666666655 Q ss_pred CceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc-c Q lcl|Aclame:pro 65 LPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS-R 143 (409) Q Consensus 65 lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~-~ 143 (409) -|+.+...++.....+...+.. .........+..+.+.+|.+|..+.++.+|.+ .+..++|..+.+..++.. . T Consensus 83 ~~~~~~~~d~~~~~~l~~~~~~-----n~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~i~~~~p~~~~~v~dd~~~~ 156 (453) T protein:vir:73 83 IPIKKTHDDKSVLEAMQLFDNL-----NDMEDEESELAKIACVYGRAYELMYQNESTES-EVIYCSPLNVFMVYDDSIKQ 156 (453) T ss_pred cCceeecCChHHHHHHHHHHHh-----cChhHHHHHHHHHHHhcCeEEEEEEeCCCCce-EEEEEcccceEEEEeCCCCc Confidence 6666543333222222222221 23455667788899999999999999888876 567788888887765542 2 Q ss_pred ee----EEEEEcCCCeE--EEEccceEEEecCcC----------------c----ccccccccHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 144 EL----YYSIHAATGNK--LIVHNMDMLHFKHIV----------------A----SNMVQGISPIDVLKNTTDFDNAVRT 197 (409) Q Consensus 144 ~~----~~~~~~~~g~~--~~~~~~~vih~~~~~----------------~----~~~~~G~sp~~~~~~~i~~~~~~~~ 197 (409) .. .|.. ...+.. ..+..+.++++.... | .+...|.|-++.+...++....+.. T Consensus 157 ~~~~~i~~~~-~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~s~~~~v~~liDa~~~~~S 235 (453) T protein:vir:73 157 KPLFAVYYGF-DEEGNLSGTVYTLLETISITGKAGEVKFGESTYNVYSDLPIVEYNFNEERQSIFEPVHSLINSYNKVTS 235 (453) T ss_pred eeEEEEEEEE-ecCceEEEEEEeCCeEEEEEecCCceEEccceeccCCceeEEEecCCCCCCcchhhHHHHHHHHHHHHH Confidence 11 1211 222222 123445554443110 0 1112466766666655544333221 Q ss_pred H---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHH-HHh-cCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHH Q lcl|Aclame:pro 198 F---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFK-QYY-EENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVA 272 (409) Q Consensus 198 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia 272 (409) . ....+..+ . .+..+..+.++....++..-- ... ...+.....+++.++.-++....+..+....+...+.|+ T Consensus 236 ~~~~~~~~~~~~-~-l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~l~~~I~ 313 (453) T protein:vir:73 236 EKANDVEYFSDQ-Y-LVFLGAEVDEEDAKNIKDNRLINFFDKNSNGQGTNAAKVDVKFLDKPDSDVQTENLLNRLERSIF 313 (453) T ss_pred HHHHHHHHhccc-e-eeeecCCCCchhhhcccccccccccccccccccccccCceeEEeeecCCHHHHHHHHHHHHHHHH Confidence 1 22333332 2 222344455555555443210 101 112223333445555545544455556777778888888 Q ss_pred HHhcCChhhcCCcccCccccHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhh Q lcl|Aclame:pro 273 NVFQLPSIFLNARSNTNFAKNEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRA 342 (409) Q Consensus 273 ~~fgvp~~~l~~~~~~~~~~~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~ 342 (409) ..-++|..-.....+.+....+. .....+...+...++.+...++..- .. .....+++.+..-... T Consensus 314 ~~s~~p~~~~~~~gn~Sg~Al~~~~~~l~~ka~~~~~~~~~~l~~~~~li~~~~~~~~-~~---~~~~~i~v~f~~~~p~ 389 (453) T protein:vir:73 314 QFTMAANISDENFGNSSGVALAYKLQAMSNLALSFQRKFQSALNRRYSLWSSLSTNAS-NK---DAWKDIEYTFTRNEPK 389 (453) T ss_pred HHhCCcccCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-Cc---cccccceEEeCCCCCC Confidence 88888753322211111111111 1122223333333333332222111 11 1112345555666778 Q ss_pred hHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhccc--ccccccC--CCCCCCCCC Q lcl|Aclame:pro 343 DSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPL--ELRKSLK--GGDKNVNES 409 (409) Q Consensus 343 d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~--~~~~~~~--gg~~n~~~~ 409 (409) +..+.++.+.+++ |+++..-+.++++.-+-+..+ +..+..-. ....+.+ +-..+...| T Consensus 390 ~~~~~a~~~~k~~--giis~et~~~~~~~~~d~~~E-------~~ri~~E~~~~~~~~~~~~~~~~~~~~~ 451 (453) T protein:vir:73 390 DIKEQAETANILK--GITSEETALSVISVIPDVQAE-------MEKIKKKKLLQLSLTRTSNLVRMKQMRG 451 (453) T ss_pred CHHHHHHHHHHHh--ccCcHHHHHHhCCCCCCHHHH-------HHHHHHHHHHHHHHHHhccCCcchhhhc Confidence 8999999998885 788887777777653211111 00111000 0000111 111111222 No 210 >protein:vir:107112 Length: 478 # NCBI annotation: putative phage portal protein # Family: family:all:125 # MgeID: mge:1571 # MgeName: CNPH82 # Cross-refs: genbank:acc:YP_950601;genbank:gi:119953681;genbank:GeneID:4643121 Probab=97.45 E-value=6.5e-05 Score=43.54 Aligned_cols=380 Identities=10% Similarity=0.024 Sum_probs=156.5 Q ss_pred Ccchhhh-----------hhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeE Q lcl|Aclame:pro 1 MAKENIV-----------TRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKM 69 (409) Q Consensus 1 M~~~~~~-----------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~ 69 (409) .....++ .|... +.+-+.+......-..............++.-..++....+|+..+.-+-+-|+.+ T Consensus 25 ~~~~~~i~~~i~~~~~~~~r~~~-~~~Yy~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~k~ivd~~~~yl~g~p~~~ 103 (478) T protein:vir:10 25 ETQEEMILRLVREHKENIDNITM-GERYYNHHPDILDAPFKRDVNGDYDETKPDWRMYTNYHQNLVDQKVAYAVANPVTF 103 (478) T ss_pred CChHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccchhhhcccccccccccceeccchHHHHHHHHhhhhcccCcee Confidence 0001111 11110 01111111000000000000000000001111234556677787777777777776 Q ss_pred eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC--cceeEE Q lcl|Aclame:pro 70 YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ--SRELYY 147 (409) Q Consensus 70 ~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~--~~~~~~ 147 (409) ...++.....+...+. | ........+..+++.+|.+|..+..+..|.+ .+..++|..+.+..++. +..... T Consensus 104 ~~~~~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~~~~~~p~~~~~v~d~~~~~~~~~~ 176 (478) T protein:vir:10 104 GVDNDKALKQIQHTLN---H---KWDDKLVDILTAASNKGIEWVQPYVDEEGEF-KTFRVPAEQAVPIWTNKERDELQAF 176 (478) T ss_pred ecCChHHHHHHHHHHh---c---cHHHHHHHHHHHHhhCCeEEEEEEecCCCce-EEEEEcccceEEEEcCCCCCceEEE Confidence 4443332223333332 2 3556667778899999999999988888764 57778898888776542 332211 Q ss_pred --EEEcCCC-eEEEEccceEEEecCcC------------------------------c----ccccccccHHHHHHHHHH Q lcl|Aclame:pro 148 --SIHAATG-NKLIVHNMDMLHFKHIV------------------------------A----SNMVQGISPIDVLKNTTD 190 (409) Q Consensus 148 --~~~~~~g-~~~~~~~~~vih~~~~~------------------------------~----~~~~~G~sp~~~~~~~i~ 190 (409) .+...+- ....+.++.|.+++... | .+...|.|-++.+...++ T Consensus 177 ir~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~g~sd~e~v~~liD 256 (478) T protein:vir:10 177 IRVYELDGAERVEYWTKDDVTFYELKEGQLIPDFYRSEDHIQPHYYQGNKLMSWGRVPFIPFKNNPQEVSDLFMYKTIID 256 (478) T ss_pred EEEEeeeCceEEEEEeCCcEEEEEecCCeeeccccccccccccceecccccccCCcceEEEeccCCCCCCcHHHHHHHHH Confidence 1111111 11123344444332210 0 011246776666665555 Q ss_pred HHHHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeec--CCCceeeeccCChhhHHHHHHHH Q lcl|Aclame:pro 191 FDNAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQ--EPGVEIEPLPKKYVSEDIVASEN 265 (409) Q Consensus 191 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl--~~g~~~~~l~~~~~d~~~~e~~~ 265 (409) ....+. ......+..+-. ++ .+.... +.......+ ... +++.+ +.|.++..++.......+.+..+ T Consensus 257 a~~~~~S~~~~~~~~~~~~~~-~~-~g~~~~--~~~~~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 327 (478) T protein:vir:10 257 ALDKRLSDTQNTFDESVELIY-IL-KGYEGE--DMKDFMHNL----KYY-KAISVAGESGSGVDTIKVEVPIDSVKEYTK 327 (478) T ss_pred HHHHHHHHHHHHHHHhhCcce-ee-ecCCcc--cccchhhhh----hhC-ceeEecCCCCCcceEEeecCCHHHHHHHHH Confidence 433222 222333333322 22 221111 111111111 112 23323 23333343444445566677788 Q ss_pred HHHHHHHHHhcCChhhcCCcccCcccc--HHH----------HHHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEE Q lcl|Aclame:pro 266 LTRERVANVFQLPSIFLNARSNTNFAK--NEE----------LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFK 333 (409) Q Consensus 266 ~~~~~Ia~~fgvp~~~l~~~~~~~~~~--~e~----------~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~ 333 (409) ...+.|+..-++|..-.... .++-|. .+. .....+...+.-.++.+...+ .... ....+. T Consensus 328 ~l~~~I~~~s~~p~~~~~~~-~~n~Sg~Ai~~~~~~l~~k~~~~~~~~~~~l~~~~~li~~~~-----~~~~--d~~~i~ 399 (478) T protein:vir:10 328 MLRDYIIEFGQGVDFQQDKF-GNSPSGIALKFMYSNLDLKANKLKNKTLTALQELLQYIIDFY-----RLDV--RVQDIE 399 (478) T ss_pred HHHHHHHHHhCCcCcCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCc--ccccce Confidence 88889999999885433221 111111 111 111222222222222222211 1111 112344 Q ss_pred ecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe-----ecccccchhcccccccccCCCCCCC Q lcl|Aclame:pro 334 FNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL-----ISGDLYPIDTPLELRKSLKGGDKNV 406 (409) Q Consensus 334 ~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~-----~~~n~~~~~~~~~~~~~~~gg~~n~ 406 (409) +.+..-...+..+.++.+.++ +|+++..-+.+.++.-.-+. .+.+. .............. .....+++++ T Consensus 400 i~f~~~~p~~~~e~~~~~~~~--~g~iS~et~i~~~~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~~d-~~~~~~~d~~ 476 (478) T protein:vir:10 400 ITFNFNVMVNELENSQIAMNS--TGLLSKETILGNHSWVQDPVAEMERIEQENIELNQQLPDIEEGLND-EQQRQSEDNQ 476 (478) T ss_pred EEeCCCCCCCHHHHHHHHHHH--hCCCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhccccCCCCcc-cccccCcCCC Confidence 444556667888888888776 68898877887775522111 00000 00000000000000 0011112222 Q ss_pred CC Q lcl|Aclame:pro 407 NE 408 (409) Q Consensus 407 ~~ 408 (409) .| T Consensus 477 ~e 478 (478) T protein:vir:10 477 SE 478 (478) T ss_pred CC Confidence 22 No 211 >protein:vir:2500 Length: 501 # NCBI annotation: putative portal gp5 # Family: family:all:524 # MgeID: mge:53 # MgeName: TM4 # Cross-refs: genbank:acc:NP_569741;genbank:gi:18496891;genbank:GeneID:932330 Probab=97.42 E-value=7e-05 Score=43.35 Aligned_cols=376 Identities=11% Similarity=0.063 Sum_probs=155.9 Q ss_pred Ccchh-------hhhhhh---hh---hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCce Q lcl|Aclame:pro 1 MAKEN-------IVTRIK---KK---LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPL 67 (409) Q Consensus 1 M~~~~-------~~~r~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~ 67 (409) |.... ++.... .+ +.+.+.+.... ..........+... ..-..+.+..-+|+..+.-+--..| T Consensus 23 ~~~~~~~~l~~~l~~~~~~~~~rl~~l~~YY~G~~~~--~~~~~~~~~~~~~~--~~~~v~n~~~~ivd~~a~~l~~~gf 98 (501) T protein:vir:25 23 MSREQLGALVADMWRLHISERQWLDRIYEYTKGLRGR--PEVPEGASDEVKEL--AKLSVKNVLSLVRDSFAQNLSVVGY 98 (501) T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--hhccccCChhhhhh--HhhhhcChHHHHHHHHHhhhcccce Confidence 43321 111111 11 11111111100 00000001111100 0011123445566666554432333 Q ss_pred eEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEE-cCCcc--e Q lcl|Aclame:pro 68 KMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLI-ENQSR--E 144 (409) Q Consensus 68 ~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~-~~~~~--~ 144 (409) .+- ++.....+... ... |. .......+..+++.+|.||..+.++..|. .+..++|..+.+.+ |.... . T Consensus 99 ~~~--d~~~~~~l~~i-~~~-N~---~d~~~~~~~~~a~i~G~ay~~v~~de~~~--~i~~~sp~~~~~iy~D~~~~~~~ 169 (501) T protein:vir:25 99 RNA--LAKENDPAWEM-WQR-NR---MDARQAEVHRPALTYGASYVTVTPTDEGP--VFRTRSPRQILAVYADPSVDAWP 169 (501) T ss_pred ecC--CccchHHHHHH-HHh-cC---hhHHHHHHHHHHhhcCceEEEEecCCCCC--eEEEeccccEEEEEecCCCCcce Confidence 321 11122233322 211 22 34455667889999999999999888873 46677888877654 32211 1 Q ss_pred e----EEEEEcCCCe---EEEEccc----------------------------------------------eEEEecCcC Q lcl|Aclame:pro 145 L----YYSIHAATGN---KLIVHNM----------------------------------------------DMLHFKHIV 171 (409) Q Consensus 145 ~----~~~~~~~~g~---~~~~~~~----------------------------------------------~vih~~~~~ 171 (409) . +|......+. ...+.+. -|+||.+.. T Consensus 170 ~~ai~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPiv~f~N~~ 249 (501) T protein:vir:25 170 QYALETWVAQKDAKPHRRGVLYDDTYMYELDLGEVVLGDAGGGQATQQPVNVREVTDVIEHGATFEGKPVCPVVRFVNGR 249 (501) T ss_pred eEEEEEEeeccccCcceeEEEecCeeEEEEecCceeeeeccccccccccccccccccccccccccCCccceeeEeccCcc Confidence 1 1111111000 0001111 234444322 Q ss_pred cccccccccHHHHHHHHHHHHHHH---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-CCce Q lcl|Aclame:pro 172 ASNMVQGISPIDVLKNTTDFDNAV---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-PGVE 247 (409) Q Consensus 172 ~~~~~~G~sp~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-~g~~ 247 (409) . ....|.|-++.+...++....+ ......++..+-..++.. +.++.+. |+ ...++++.++ ++.+ T Consensus 250 ~-~~~~g~sdie~v~~l~Da~~~~~s~~~~~~e~~a~p~~~i~G~----~~~~~~~----~~---~~~~~i~~~~~~~~~ 317 (501) T protein:vir:25 250 D-ADDMIVGEVAPLILLQQAINSVNFDRLIVSRFGANPQRVISGW----TGSKAEV----LK---ASALRVWTFEDPEVK 317 (501) T ss_pred c-cCccccchhhhhHHHHHHHHHHHHHHHHHHHhhccHHHHHhCC----CCCccch----hh---hcccceeccCCCCce Confidence 1 1234777665555444333322 222233333332222211 1122221 11 1234566665 4677 Q ss_pred eeeccCChhhH-HHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHH----HHHHHHHH--hh Q lcl|Aclame:pro 248 IEPLPKKYVSE-DIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVK----QYEEEFNR--KL 320 (409) Q Consensus 248 ~~~l~~~~~d~-~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~----~ie~~ln~--~l 320 (409) +.++... ++ .+.+..+....+|++.-++|+..+++... | .+.+.. .+....+.-.+. .+...|.+ +| T Consensus 318 ~~q~~~~--~~~~~~~~l~~~i~~i~~~s~~P~~~~~~~~~-N-~Sg~Al--~~~~~~l~~ka~~k~~~f~~~l~~~~rl 391 (501) T protein:vir:25 318 AQAFPPA--SVEPYNLILEEMLQHVAMVAQISPAQVTGKMI-N-VSAEAL--AAAEANQQRKLAAKRESFGESWEQLLRL 391 (501) T ss_pred EEEeccc--ChHHHHHHHHHHHHHHHhhcCCChhhhccccC-C-hHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 7665532 33 37888999999999999999999975422 1 111211 122222222222 22222222 11 Q ss_pred c----ChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHH-HhCCCCCC-----------CCCEEe--- Q lcl|Aclame:pro 321 L----TKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIRE-WEDLPPVE-----------GGDKPL--- 381 (409) Q Consensus 321 l----~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~-~~g~~p~~-----------~gd~~~--- 381 (409) + ..........+.+.+......+..+.++++.+++..|+ ..-.+.. +.|+.+-+ ..+... T Consensus 392 ~~~~~~~~~~~~~~~i~v~w~~~~~~s~~~~ada~~kl~~~gi-s~et~~~~~~g~~~~~ie~~~~~~~e~~~~~~~~~~ 470 (501) T protein:vir:25 392 AAEMDDDPDTAADSGAEVLWRDTEARSFGAVVDGITKLASAGI-PIEHLLSMVPGMTQQTIQAIKDSLRGGEVKSLVDKL 470 (501) T ss_pred HHHHhCCCccccceeeeEEecCCCCCCHHHHHHHHHHHHhcCC-CHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHh Confidence 1 11111122456677777788899999999999998875 4433333 34665421 011000 Q ss_pred ecccccchhcccc---cccccCCCCCCCCCC Q lcl|Aclame:pro 382 ISGDLYPIDTPLE---LRKSLKGGDKNVNES 409 (409) Q Consensus 382 ~~~n~~~~~~~~~---~~~~~~gg~~n~~~~ 409 (409) .+..-.+...... .+...+ |..+++.| T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g 500 (501) T protein:vir:25 471 LSNEPAPVPPPPPQAAAQALNE-GGVNGNGG 500 (501) T ss_pred hccCcCCCCCCCCCCCcccccc-ccCCCCCC Confidence 0001001100000 001111 12233333 No 212 >protein:vir:78083 Length: 537 # NCBI annotation: gp3 # Family: family:all:125 # MgeID: mge:1844 # MgeName: P35 # Cross-refs: genbank:acc:YP_001468787;genbank:gi:157325368;genbank:GeneID:5601845 Probab=97.35 E-value=8.7e-05 Score=42.84 Aligned_cols=389 Identities=12% Similarity=0.048 Sum_probs=161.6 Q ss_pred Ccchhhhhhhhhhh---------------hcccccCcccccccccccCCCCcc----ccchhHHhhhHHHHHHHHHHHHh Q lcl|Aclame:pro 1 MAKENIVTRIKKKL---------------IDNWIDQSASKLYDFSPWKNKSFW----GVINNTLETNETIFSAITKLSNS 61 (409) Q Consensus 1 M~~~~~~~r~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~v~~~i~~ia~~ 61 (409) |.++.+-.-+...+ .+-+.+... -+.....+...... ...++.-..+....-.|+..+.= T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~YY~g~h~-Il~r~~~~~~~~~~~~~d~~~~nnki~~nf~k~Ivd~~~~y 86 (537) T protein:vir:78 8 KPIDQLGGLLNTEITTYMASNHIKWAHIGENYYNQEND-IEKSRIFYMNDKGQLREDNYASNVKISHGFFTELVDQLAQY 86 (537) T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch-hhhcccccccccccccccccccccccccchHHHHHHHHhhh Confidence 33322211111110 011111100 00000000000000 00011112223333455555555 Q ss_pred hccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCC Q lcl|Aclame:pro 62 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQ 141 (409) Q Consensus 62 ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~ 141 (409) +-+-|+.+...+ ....+....|+..-+ .........+..++..+|.||.++..+.+|.+ .+..++|..+-++.++. T Consensus 87 l~G~Pv~~~~~d-~~~~e~~~~l~~~~~--~~~~~~~~el~~~~s~~G~ay~~~y~de~~~~-~~~~i~p~~~~pv~d~~ 162 (537) T protein:vir:78 87 LLSNGVEVKVKD-EDNTQLDEILQEYFD--EDFQATIDTLVTNASKKGFEGIFARTTSEGKL-KFQTVDGLTLIPVFDDY 162 (537) T ss_pred hcccCceeecCc-chhHHHHHHHHHHhh--ccHHHHHHHHHHHHhhcCeeEEEeeecCCCce-EEEEEccceeEEEEcCC Confidence 666677764332 233345555543322 23345566777899999999999999988864 57778888888877766 Q ss_pred cceeE----EEEEcC-----CCe----EEEEccceEEEecCcCc------------------------------------ Q lcl|Aclame:pro 142 SRELY----YSIHAA-----TGN----KLIVHNMDMLHFKHIVA------------------------------------ 172 (409) Q Consensus 142 ~~~~~----~~~~~~-----~g~----~~~~~~~~vih~~~~~~------------------------------------ 172 (409) +.... |..... .+. ...+.++.|.+++.... T Consensus 163 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~evyt~~~i~~y~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 242 (537) T protein:vir:78 163 GVLKMIIRWYSEIRYSTKQQSTETIWHADVWNEEAVCYYIQDDEGVSTTYKLDEAYNPNPAPHVLAIEESTDADFEDTDG 242 (537) T ss_pred CCceeEEEEEeeeeccccccCcceEEEEEEEcCCcEEEEEecCCcccccccccccccccccceeeecccccccccccccc Confidence 54321 111110 111 11234455544431100 Q ss_pred ----------------ccccccccHHHHHHHHHHHHHHHHHH---HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 173 ----------------SNMVQGISPIDVLKNTTDFDNAVRTF---NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 173 ----------------~~~~~G~sp~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (409) .+...|.|-++.+...++....+... ....+..+ -.++ .+....+ ...+++.+. T Consensus 243 ~~~~~~~~g~iPvv~f~nn~~~~sd~e~v~~LiDayd~~~S~~an~~~~~~~~-ilvi-~g~~~~~--~~~~~~~l~--- 315 (537) T protein:vir:78 243 YQVLGRSYSKFPFQLLYNNKDGMSDVKRVKSIIDDYDVMNCFLSNNLQDFSEA-IYVV-KGFSGDS--TDKLRQNIK--- 315 (537) T ss_pred ccccccCCcceeEEEeccCccCCCchhhhHHHHHHHHHHHHhhhhHHHHhcCc-eeee-ecCCCcc--chhHHHHHh--- Confidence 01123666666666655544333222 23333332 2222 2222211 111222221 Q ss_pred cCCCceeecCCC--ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccH------------HHHHHH Q lcl|Aclame:pro 234 EENGGILFQEPG--VEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN------------EELNRF 299 (409) Q Consensus 234 ~~~~~~~vl~~g--~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~------------e~~~~~ 299 (409) ..+-+.+-+.+ ++|..... .+.......+...+.|...-.+|.. .....|+-|.. ....+. T Consensus 316 -~~~~i~v~~d~~~v~~l~~~~--~~~~~e~~ld~L~~~I~~~s~~~~~--~~~~~gn~SGvAlk~~~~~l~~ka~~ke~ 390 (537) T protein:vir:78 316 -AKKMIGVNGDNAGMEIQTVSI--PYEARKAKMDIDVENIYRSGMGFNS--TAVGDGNVTNVVIKSRYTLLAMKARKMET 390 (537) T ss_pred -hcCceeecCCCCceeEEEecC--CHHHHHHHHHHHHHHHHHhcCCCCC--ccccccCCcHHHHHHHHhhHHHHHHHHHH Confidence 12222233233 55544333 3333344455555566554333321 11111221111 122333 Q ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--- Q lcl|Aclame:pro 300 YLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--- 376 (409) Q Consensus 300 ~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--- 376 (409) ++...+.-.++.|...++.+-... .....+.+.+..-...+..+.++.+.+++..|+++..-+.+.+++-.-+. T Consensus 391 ~f~~~l~~~~~~i~~~~~~~~~~~---~d~~~i~i~f~~~~P~n~~e~a~~~~~l~~~giiS~eT~l~~~p~vdd~e~ek 467 (537) T protein:vir:78 391 SLRKVLRWCADMVVSDIALRGLGE---YDSNDICFEIEPHVLANELDIATTRKTEAETEALKIGNIMTVAPRIGDDETLK 467 (537) T ss_pred HHHHHHHHHHHHHHHHHhhcCCcc---cccceeeEEeccCCCCCHHHHHHHHHHHHhcCcchHHHHHHhCCCCCCHHHHH Confidence 444555555555555544322111 12234666666777889999999999999999999888777665422110 Q ss_pred -----------------CCEEeecccccc----hhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 377 -----------------GDKPLISGDLYP----IDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 377 -----------------gd~~~~~~n~~~----~~~~~~~~~~~~gg~~n~~~~ 409 (409) .+.-.......| .....+.+...+-++.++..| T Consensus 468 ~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 521 (537) T protein:vir:78 468 LIAEELDLDYNELKDALAEQDAQSLDVSPDVQAMLDGLPVNANQPPVDPNQPVA 521 (537) T ss_pred HHHHHHHhhhhhhhhhhhhhcccccCcCcchhhhcCCCCCCCCCCCCCccCCCC Confidence 000000000101 000000000001111111111 No 213 >protein:vir:99781 Length: 511 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1497 # MgeName: phiETA2 # Cross-refs: genbank:acc:YP_001004303;genbank:gi:122891757;genbank:GeneID:4712336 Probab=97.05 E-value=0.00019 Score=40.97 Aligned_cols=394 Identities=9% Similarity=0.061 Sum_probs=160.9 Q ss_pred Ccc---hhhhhhhhhh----h--hcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAK---ENIVTRIKKK----L--IDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~---~~~~~r~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) +-. .+++++.... . ...+......-+..... ....+. .+.-..+......|+..+.-+-+-|+.+.. T Consensus 40 ~~~~~i~~~i~~~~~~~~~r~~~l~~Yy~g~~~i~~~~~~-~~~~~~---~~~ki~~n~~k~Iv~~~~~yl~g~p~~~~~ 115 (511) T protein:vir:99 40 QNVNEVSKYIEHHMDYQRPRLKVLSDYYEGKTKNLVELTR-RKEEYM---ADNRVAHDYASYISDFINGYFLGNPIQYQD 115 (511) T ss_pred ccHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccccccCc-cccccc---CcceeecchHHHHHHHHHhhhcccCceeec Confidence 111 0122211110 0 00111100000000000 000000 001122234445566666666667777643 Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee---- Q lcl|Aclame:pro 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL---- 145 (409) Q Consensus 72 ~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~---- 145 (409) .++.....+...+.. -........+..+++.+|.+|.++.++.+|.+ .+..++|..+.++.++.. ... T Consensus 116 ~d~~~~~~l~~~~~~-----n~~~~~~~~~~~~~~i~G~a~~~vy~ded~~~-~i~~~~p~~~~~vyd~~~~~~~~~~vr 189 (511) T protein:vir:99 116 DDKDVLEAIEAFNDL-----NDVESHNRSLGLDLSIYGKAYELMIRNQDDET-RLYKSDAMSTFVIYDNTIERNSIAGVR 189 (511) T ss_pred CchHHHHHHHHHHhh-----cCHhHHHHHHHHHHHhcCeeEEEEEeCCCCce-EEEEEccceeEEEEcCCCCCceEEEEE Confidence 333222222222221 23556667788899999999999999888764 678889988888876542 221 Q ss_pred EEEEEcCCC---e----EEEEccceEEEecCcCc-------------------------ccccccccHHHHHHHHHHHHH Q lcl|Aclame:pro 146 YYSIHAATG---N----KLIVHNMDMLHFKHIVA-------------------------SNMVQGISPIDVLKNTTDFDN 193 (409) Q Consensus 146 ~~~~~~~~g---~----~~~~~~~~vih~~~~~~-------------------------~~~~~G~sp~~~~~~~i~~~~ 193 (409) +|......+ . ...+.++.+.+++.... .+...|.|.++.+...++... T Consensus 190 ~~~~~~~~~~~~~~~~~~~vyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~g~sd~e~v~~liDa~d 269 (511) T protein:vir:99 190 YLRTKPIDKTDEDEVFTVDLFTSHGVYRYLTSRTNGLKLTPRENGFESHSFERMPITEFSNNERRKGDYEKVITLIDLYD 269 (511) T ss_pred EEEeeecccCccceEEEEEEEeCCcEEEEEecCCccccccccccccccCCCCccceEEecCCCCCCCchhhhHHHHHHHH Confidence 121111111 1 11234455555432110 011246776666666555333 Q ss_pred HHHH---HHHHhcCCCceeEEecCCcCCHHHHHHHHHH---HH-HHhcCCCceeecCCCceeeeccCChhhHHHHHHHHH Q lcl|Aclame:pro 194 AVRT---FNLTEMQKPDSFMLKYGSNVSTEKRQQVLED---FK-QYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENL 266 (409) Q Consensus 194 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~ 266 (409) .+.. .....+..+-. ++......+.++....++. +. ......+...-.+++.++..++.......+....+. T Consensus 270 ~~~S~~~~~~~~~~~~~l-v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~e~~~~~ 348 (511) T protein:vir:99 270 NAESDTANYMSDLNDAML-LIKGNLNLDPVEVRKQKEANVLFLEPTVYADSEGRETEGSVDGGYIYKQYDVQGTEAYKDR 348 (511) T ss_pred HHHHHHHHHHHHhhchhh-hhccCcccCchhhcccccccceecccccccccccccCCCCcceeEEeecCCHHHHHHHHHH Confidence 2221 12223333221 1111122233333322221 00 000001111223445555556555455666777888 Q ss_pred HHHHHHHHhcCChhhcCCcccCccc--cHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhcChhhccccceEEe Q lcl|Aclame:pro 267 TRERVANVFQLPSIFLNARSNTNFA--KNEEL----------NRFYLQHTLLPIVKQYEEEFNRKLLTKTDREKNRYFKF 334 (409) Q Consensus 267 ~~~~Ia~~fgvp~~~l~~~~~~~~~--~~e~~----------~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~~~~~~~~~ 334 (409) ..+.|+..-++|..-.+... ++-| ..... ....+...+.-.++.|...+...--.. ....-..+++ T Consensus 349 L~~~I~~~s~~P~~~~~~~~-gn~Sg~Alk~~~~~l~~ka~~k~~~~~~~l~~~~~li~~~~~~~~~~~-~~~~~~~i~i 426 (511) T protein:vir:99 349 LNSDIHMFTNTPNMKDDNFS-GTQSGEAMKYKLFGLEQRTKTKEGLFTKGLRRRAKLLETILKNTRSID-VSKDFNTVRY 426 (511) T ss_pred HHHHHHHHhCCccccccccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cccccccceE Confidence 88899999999875443221 2211 11111 111222222222222222222111000 0001112455 Q ss_pred cchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEEe------ecccccchh---cccccccccCCCC Q lcl|Aclame:pro 335 NVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKPL------ISGDLYPID---TPLELRKSLKGGD 403 (409) Q Consensus 335 d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~~------~~~n~~~~~---~~~~~~~~~~gg~ 403 (409) .+..-...+..+.++.+.++. |+++.--++++++.-+.+. .+.+. ++....+.. ...+........+ T Consensus 427 ~f~~~~p~n~~e~~~~~~kl~--GiiS~et~l~~l~~v~D~~~E~~ri~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (511) T protein:vir:99 427 VYNRNLPKSLIEELKAYIDSG--GKISQTTLMSLFSFFQDPELEVKKIEEDEKESIKKAQKNMYQDPRNINDDEQDDSTK 504 (511) T ss_pred EeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCc Confidence 555666778899999988884 8898888888875432110 00000 000000000 0000000000001 Q ss_pred CCCCCC Q lcl|Aclame:pro 404 KNVNES 409 (409) Q Consensus 404 ~n~~~~ 409 (409) .+.+++ T Consensus 505 ~~~d~~ 510 (511) T protein:vir:99 505 DSIDKK 510 (511) T ss_pred Cccccc Confidence 111111 No 214 >protein:vir:106571 Length: 499 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1598 # MgeName: Lj965 # Cross-refs: genbank:acc:NP_958580;genbank:gi:41179240;genbank:GeneID:2717107 Probab=96.94 E-value=0.00025 Score=40.35 Aligned_cols=379 Identities=11% Similarity=0.092 Sum_probs=157.3 Q ss_pred Ccc---hhhhhhhhhh------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAK---ENIVTRIKKK------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~---~~~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |-+ .+++...... +.+-+.+.. ....-.... .. -.+.-+.+.....+|+..+.-+-+-|+.+.. T Consensus 16 ~~~~~i~~~i~~~~~~~~~~~~l~~Yy~g~~-----~i~~~~~~~-~~-~~~~ki~~n~~~~Iv~~~~~~l~g~p~~~~~ 88 (499) T protein:vir:10 16 PNIEAINYAIRELQNRKKRLDKLSDYYNGKQ-----EIEKHEFDN-AT-VEAANVMVNHAKYITDMNVGFMTGNPVKYVA 88 (499) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----chhcCCcCc-CC-CCcceeecchHHHHHHHHhhhhcccCceeec Confidence 111 0111111110 111111110 100000000 00 0011122344555677777666666776644 Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCce----------------eEEEeeCCcceE Q lcl|Aclame:pro 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP----------------SKLFLLNPDVVE 135 (409) Q Consensus 72 ~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~----------------~~l~~l~p~~v~ 135 (409) .++.....+...+.. -....+...+..+.+.+|.+|.++..+..|.+ ..+..++|..+- T Consensus 89 ~~~~~~~~l~~~~~~-----n~~~~~~~~~~~~~~~~G~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~v~p~~~~ 163 (499) T protein:vir:10 89 EKGKNIDDILEVFNQ-----IDIHKHDIELEKDLSVFGYGYELLYLKKTDPISVRDELGNEKLTPNTELKIEVIDPRATV 163 (499) T ss_pred CChhHHHHHHHHHhh-----cCHhHHHHHHHHHHHhcCceEEEEEecccccccccccccccccccccceEEEEEcccceE Confidence 443333334443332 23455677788899999999999888877743 346677887777 Q ss_pred EEEcCCcce------eEEEEEc-CCCeE----EEEccceEEEecCcC----------------c---------ccccccc Q lcl|Aclame:pro 136 MLIENQSRE------LYYSIHA-ATGNK----LIVHNMDMLHFKHIV----------------A---------SNMVQGI 179 (409) Q Consensus 136 ~~~~~~~~~------~~~~~~~-~~g~~----~~~~~~~vih~~~~~----------------~---------~~~~~G~ 179 (409) +..++.... .+|.... ..+.. ..+.++.|.++.... + .+...|. T Consensus 164 ~v~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~iyt~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~ 243 (499) T protein:vir:10 164 VVCDDTVEHDPLFAVFTQEKKDLEGNTNGYSITVYMPQRIVEYRTKTTMEVSANDPIVYDGENLFGAVPIIEFRNNEERQ 243 (499) T ss_pred EEecCCCCcceEEEEEEEEEeecCCCceEEEEEEEeCCeEEEEEecCCccccCcceecccccCCCCccceEEecCCCCCC Confidence 666544321 1121111 11111 123444554432110 0 0112355 Q ss_pred cHHHHHHHHHHHHHHH---HHHHHHhcCCCceeEEecCCcCCHH--HHHHHHHHHHHHhcCCCceee--cCCCceeeecc Q lcl|Aclame:pro 180 SPIDVLKNTTDFDNAV---RTFNLTEMQKPDSFMLKYGSNVSTE--KRQQVLEDFKQYYEENGGILF--QEPGVEIEPLP 252 (409) Q Consensus 180 sp~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v--l~~g~~~~~l~ 252 (409) |-++.+...++....+ .......++.+-. ++ .+..+.+. ....+ ..+++.. .+++.+++.++ T Consensus 244 ~d~e~v~~liD~~~~~~S~~~~~~~~~~~~~l-v~-~G~~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~l~ 312 (499) T protein:vir:10 244 GDFEQLISLIDAYNLLQTDRISDKEAFVDALL-VT-FGFGLGDDKDDIQRL---------KRGAIEAPPREEGADIEWLT 312 (499) T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHhcCcee-ee-ecCccccccchhhhh---------hhcceeccCCCCCCcceEEe Confidence 6555555554433322 2222333333322 22 22222221 11111 1122322 24555565565 Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcccc--H----------HHHHHHHHHHHHHHHHHHHHHHHHHhh Q lcl|Aclame:pro 253 KKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAK--N----------EELNRFYLQHTLLPIVKQYEEEFNRKL 320 (409) Q Consensus 253 ~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~--~----------e~~~~~~~~~~l~P~~~~ie~~ln~~l 320 (409) .......+....+...+.|...-++|..-.... .++-|. . .+.....+...+.-.++.+...++..- T Consensus 313 ~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~-~gn~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~ 391 (499) T protein:vir:10 313 KSFDETQVNLLSQSIENDIHKISYVPNMNDEKF-MGNVSGEAMKFKLFGLENLLSIKQRYFFDGLRRRLKLIQTIVNIKG 391 (499) T ss_pred ccCCHHHHHHHHHHHHHHHHHHhCcccCCchhh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC Confidence 544455566677777788888887774322111 111111 1 111223333333333333333332210 Q ss_pred cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC--CCEE--------------eecc Q lcl|Aclame:pro 321 LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG--GDKP--------------LISG 384 (409) Q Consensus 321 l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~--gd~~--------------~~~~ 384 (409) .......+.+.+..-...+..+.++.+.++ .|+++.--++++++.-+-+. .+.+ .... T Consensus 392 ----~~~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~l~~v~d~~~E~~ri~~E~~~~~~~~~~~~~~~ 465 (499) T protein:vir:10 392 ----ANDDASGCKISLVANIPSNLSDVVNNVKNA--DGIIPRKYTYSWLPDVDNPQDVIDEMNQQDAETIKKNQEALRGQ 465 (499) T ss_pred ----CccccccceEEeCCCCCCCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhccC Confidence 001112334444555677889999999988 68899888888876532111 1110 0000 Q ss_pred cccchhcccccc-cc---cCCCCCCCCCC Q lcl|Aclame:pro 385 DLYPIDTPLELR-KS---LKGGDKNVNES 409 (409) Q Consensus 385 n~~~~~~~~~~~-~~---~~gg~~n~~~~ 409 (409) +..+.+.....+ ++ .+++..|.+.| T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (499) T protein:vir:10 466 DPDRLELEDKQDDSSENDKEAGSNHNQSH 494 (499) T ss_pred CCCCCCCCCCCcccCCCCCCCccccccCC Confidence 000000000000 00 01111111112 No 215 >protein:vir:94546 Length: 506 # NCBI annotation: minor head protein # Family: family:all:125 # MgeID: mge:1510 # MgeName: phiJL-1 # Cross-refs: genbank:acc:YP_223886;genbank:gi:62327098;genbank:GeneID:5075562 Probab=96.93 E-value=0.00025 Score=40.29 Aligned_cols=392 Identities=11% Similarity=0.042 Sum_probs=157.7 Q ss_pred Ccchh---hhhhhhhh-------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEe Q lcl|Aclame:pro 1 MAKEN---IVTRIKKK-------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMY 70 (409) Q Consensus 1 M~~~~---~~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~ 70 (409) |-... ++.+.... +.+-+.+....-...+.. ....+. ...-...+.....|+..+.-+-.-|+.+. T Consensus 22 l~~~~i~~li~~~~~~~~~r~~~l~~YY~g~~~~i~~~~~~-~~~~~~---~~~ki~~n~~~~Iv~~~~~~l~G~p~~~~ 97 (506) T protein:vir:94 22 LTPNKIMKFITHHFNYQRPRLEMLDDYYQGYNLKILDKQSR-RHEDGK---ADHRATHSFAKYIADFQTSYSVGNPINVK 97 (506) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc-cccccC---CcceeecchHHHHHHHhhhhhcccCceee Confidence 22211 11111111 011111111000000000 000000 11122345566677777777666677664 Q ss_pred eccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc--cee--- Q lcl|Aclame:pro 71 EDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS--REL--- 145 (409) Q Consensus 71 ~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~--~~~--- 145 (409) ..++.....+..++.. -........+..+++.+|.||.++..+.+|.+ .+..++|..+.+..++.. ... T Consensus 98 ~~d~~~~~~l~~~~~~-----N~~~~~~~~~~~~~~~~G~a~~~v~~ded~~~-~i~~~~p~~~~~v~dd~~~~~~~~~v 171 (506) T protein:vir:94 98 LPDDGSNSGFDTFNKA-----NDVDAENYDLFLDMSRYGRAYEYVYRGEDNEE-HLAKLDPLDTFVIYSTDVDPKPIMAV 171 (506) T ss_pred cCcchHHHHHHHHHhc-----cCHhHHHHHHHHHHHhcCeEEEEEEecCCCee-EEEEEcccceEEEecCCCCCceEEEE Confidence 4433322333333321 23455667778889999999999998888764 577788988888776532 111 Q ss_pred -EEEEEcCCCe--E------EEEccceEEEecCc-----------C-----c----ccccccccHHHHHHHHHHHHHHH- Q lcl|Aclame:pro 146 -YYSIHAATGN--K------LIVHNMDMLHFKHI-----------V-----A----SNMVQGISPIDVLKNTTDFDNAV- 195 (409) Q Consensus 146 -~~~~~~~~g~--~------~~~~~~~vih~~~~-----------~-----~----~~~~~G~sp~~~~~~~i~~~~~~- 195 (409) +|......+. . ..+.+..+.++... + | .+...|.|.++.+...++....+ T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~yt~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~sd~e~~~~liDa~d~~~ 251 (506) T protein:vir:94 172 RYHQIELVDDNQVSTINYVPETWTADTYTLYNPTPIMGKMQVDTTKPITTFPVVEFKNSNFRLGDFENVLPLIDLYDAAQ 251 (506) T ss_pred EEEeeeeccCCceeEEEEEEEEEeCceEEEeccccCccceeccccccCCccceEEecCCCCCCCchhhhHHHHHHHHHHH Confidence 1111111110 0 01122222221100 0 0 01123555555544444322211 Q ss_pred --HHHHHHhcCC--------Ccee--------EEec----CCcCCHHHHHHHHHHHHHHh----cCCCceeecCCCceee Q lcl|Aclame:pro 196 --RTFNLTEMQK--------PDSF--------MLKY----GSNVSTEKRQQVLEDFKQYY----EENGGILFQEPGVEIE 249 (409) Q Consensus 196 --~~~~~~~~~~--------~~~~--------~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~vl~~g~~~~ 249 (409) .......+.. .... .... +.....+....+.+.+.... .+.+.....+.+.+++ T Consensus 252 S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 331 (506) T protein:vir:94 252 SDTANYMTDLNEAMLIIQGDIDTLFEGSDMMNTIDPNDEDAMAKLAKDKLELIKEMKDANMLLLKSGMTVNGTQTSVDAK 331 (506) T ss_pred HHHHHHHHHhhhHHHHHhcCccccccchhccccccccccccccccccchhHHHhhhhhcCeeeecccccccCccccccce Confidence 1111111111 1000 0000 00001111111111111100 1122222333445555 Q ss_pred eccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCc-ccCccccHH----------HHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 250 PLPKKYVSEDIVASENLTRERVANVFQLPSIFLNAR-SNTNFAKNE----------ELNRFYLQHTLLPIVKQYEEEFNR 318 (409) Q Consensus 250 ~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~-~~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~ln~ 318 (409) -++.......+....+...+.|+..-++|..-.... .+.++.... ...+..+...+...++.+...++. T Consensus 332 ~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~~~n~Sg~Aik~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~ 411 (506) T protein:vir:94 332 YINKTYDVVGSEAYKKRVAGDIHKFSHTPDLTDENFASNSSGVAMQYKVLGTVELASTKRRMFERGLYARYQIISDIENS 411 (506) T ss_pred eeeecCCHHHHHHHHHHHHHHHHHHhCccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh Confidence 566655666677888888999999999986433211 111111111 112233333444444444433332 Q ss_pred hhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCC--CEEeecccccchhcccccc Q lcl|Aclame:pro 319 KLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGG--DKPLISGDLYPIDTPLELR 396 (409) Q Consensus 319 ~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~g--d~~~~~~n~~~~~~~~~~~ 396 (409) . ..........+++.+..-...|..+.++.+.++ .|+++...++++++.-.-|.. +.+.--. ...+... .+ T Consensus 412 ~--~~~~~~d~~~i~i~f~~~~p~d~~e~a~~~~kl--~g~iS~et~~~~lp~v~d~~~E~~ri~~E~--~~~~~~~-~~ 484 (506) T protein:vir:94 412 I--HGDWTFDPQELTFTFRDNLPADNISQIKALVQA--GATLPQKYLYQQLPGVTNPQDIVDMMKEQS--ANGDYSF-DQ 484 (506) T ss_pred c--CCccccccccceEEeCCCCCcCHHHHHHHHHHH--hccCChHHHHHhCCCCCCHHHHHHHHHHHH--HHHhhcc-hh Confidence 1 110011122345556677778899999998887 589999999998755331110 0000000 0000000 00 Q ss_pred cccCC--C--CCCCCCC Q lcl|Aclame:pro 397 KSLKG--G--DKNVNES 409 (409) Q Consensus 397 ~~~~g--g--~~n~~~~ 409 (409) ....+ + +...+++ T Consensus 485 ~~~~~~~~~~~~~~~~~ 501 (506) T protein:vir:94 485 NGVISNDGQTNTTATQT 501 (506) T ss_pred hcCCCcccCcccccccc Confidence 00000 0 1111111 No 216 >protein:vir:102950 Length: 471 # NCBI annotation: portal protein # Family: family:all:125 # MgeID: mge:1461 # MgeName: EJ-1 # Cross-refs: genbank:acc:NP_945279;genbank:gi:39653714;interpro:IPR006428;uniprot:Q708N3;genbank:GeneID:2672864 Probab=96.52 E-value=0.00055 Score=38.48 Aligned_cols=374 Identities=12% Similarity=0.035 Sum_probs=155.7 Q ss_pred Ccchhhhh---hhhhh----------hhcccccCccc---------ccccccccCCCCccccchhHHhhhHHHHHHHHHH Q lcl|Aclame:pro 1 MAKENIVT---RIKKK----------LIDNWIDQSAS---------KLYDFSPWKNKSFWGVINNTLETNETIFSAITKL 58 (409) Q Consensus 1 M~~~~~~~---r~~~~----------~~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~i 58 (409) |-...+.. +.... ...-+.+.... ........ .........+.-..++.....|+.. T Consensus 1 ~~~e~~~~~i~~~~~~~~~~~~~~~~~~~Yy~g~hdi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ki~~n~~~~Ivd~~ 79 (471) T protein:vir:10 1 MEIEVIKKIISSQMVKHGKFVSQAAEAEKYYRNENDIKRKRKPADKKGAENEAK-AEDNAFRNADNRISHNWHQLLLDQK 79 (471) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhhhhccccccc-ccccccccccceeccchhHHHHHhh Confidence 33322211 11000 00000010000 00000000 0000000011122344555666666 Q ss_pred HHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCC-CceeEEEeeCCcceEEE Q lcl|Aclame:pro 59 SNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIY-HQPSKLFLLNPDVVEML 137 (409) Q Consensus 59 a~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~-G~~~~l~~l~p~~v~~~ 137 (409) +.-+-+-|+.+...++.....+...+. | ........+..+++.+|.+|.++.++.. |. ..+..++|..+-+. T Consensus 80 ~~yl~G~p~~~~~~~~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~g~-~~~~~~~p~~~~~i 152 (471) T protein:vir:10 80 KAYALTYPPTFDVDDKKVNDMIVDVLG---D---DYERISKQLCVNAGNAGIAWLHVWKDASDNS-FRYACVDSKEVIPI 152 (471) T ss_pred hhhhcccCceeccCChHHHHHHHHHHh---c---CHHHHHHHHHHHHhhCCeEEEEEEeeCCCCe-eEEEEEcccceEEE Confidence 666666777764433322222222221 2 2445566677899999999999988754 54 56788899888887 Q ss_pred EcCCcc--ee----EEEEEc-CCCeEE----EEccceEEEecCcC-------------------------------cc-- Q lcl|Aclame:pro 138 IENQSR--EL----YYSIHA-ATGNKL----IVHNMDMLHFKHIV-------------------------------AS-- 173 (409) Q Consensus 138 ~~~~~~--~~----~~~~~~-~~g~~~----~~~~~~vih~~~~~-------------------------------~~-- 173 (409) .++... .. +|.... .++... .+..+.+.|++... +. T Consensus 153 ~d~~~~~~~~~~ir~~~~~~~~~~~~~~~~~vy~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 232 (471) T protein:vir:10 153 YSKSLDKKSIGVLRVYSSIDETDGKNYTVYEYWNDKECSFYRHEKEKPLEELETFQAISLIDTMNGDRSSDNSFKHDFGL 232 (471) T ss_pred EcCCCCCceEEEEEEEEeeccCCCceeEEEEEEeCCcEEEEEecCCcccccccccccccccccccccccccccccCCCCc Confidence 765431 11 222111 112111 12344454443210 00 Q ss_pred -------cccccccHHHHHHHHHHHHHHH---HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC Q lcl|Aclame:pro 174 -------NMVQGISPIDVLKNTTDFDNAV---RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE 243 (409) Q Consensus 174 -------~~~~G~sp~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 243 (409) +...|.|-++.+...++....+ .......++.+- .++ .+... +..+.....+. ..+++.++ T Consensus 233 iPvv~~~n~~~~~sd~e~v~~liDa~d~~~S~~~~~~~~~~~~~-lv~-~g~~~--~~~~~~~~~~~-----~~~~i~~~ 303 (471) T protein:vir:10 233 VPFIPFKNNEIETNDLKPIKDLVDVYDKVFSGFVNDTDDVQEVI-FVL-TNYGG--QDKQEFLEDLK-----RYKMIKMD 303 (471) T ss_pred eeEEEeccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhCce-eee-ecCCc--cccchhHHHhh-----cCCeEEec Confidence 1123556666555555433322 222233344332 222 22111 11111111111 11222221 Q ss_pred -----CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH----------HHHHHHHHHHHH Q lcl|Aclame:pro 244 -----PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL----------NRFYLQHTLLPI 308 (409) Q Consensus 244 -----~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~----------~~~~~~~~l~P~ 308 (409) .+.+++-++.......+....+...+.|+..-++|..-....++.++...+.. .+..+...+.-. T Consensus 304 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~tp~~~~~~~gn~Sg~Alk~~~~~l~~k~~~~~~~~~~~l~~~ 383 (471) T protein:vir:10 304 NDGMGDQSGVTTIAIDIPTEARNLILERTKKQIFISGQGVNPETDKLGNSSGVALKFLYSLLELKAGNMETQFRSGYATL 383 (471) T ss_pred CCCCccCccceEEeecCChHHHHHHHHHHHHHHHHHhCCcCCCcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 22233334433334456677777888898888887643332221111111111 111222222222 Q ss_pred HHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccc Q lcl|Aclame:pro 309 VKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYP 388 (409) Q Consensus 309 ~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~ 388 (409) ++.+...+ .. .....+.+.+......|..+.++.+.++ +|+++..-++++++.-. +-+ .-+.. T Consensus 384 ~~li~~~~-----~~---~d~~~i~i~f~~~~p~n~~e~~~~~~kl--~g~iS~et~~~~~p~v~--D~~-----~E~er 446 (471) T protein:vir:10 384 VKMILKHL-----GL---SDKLKIKQTWTRNSINNDTEMAQVVSTL--ATITSRENVAKSNPIVE--DWQ-----DELRL 446 (471) T ss_pred HHHHHHHh-----cc---CCCceeEEEeCCCCCCCHHHHHHHHHHH--hccCchHHHHHhCCCCC--CHH-----HHHHH Confidence 22222221 11 1223456666777788999999998887 58899888888765422 111 00111 Q ss_pred hhc--c---cccccccCCCCCCCCC Q lcl|Aclame:pro 389 IDT--P---LELRKSLKGGDKNVNE 408 (409) Q Consensus 389 ~~~--~---~~~~~~~~gg~~n~~~ 408 (409) +.. . .......++++.++-| T Consensus 447 i~~E~~~~~~~~~~~~~~~~~~e~~ 471 (471) T protein:vir:10 447 QKAEQEGRSEKLYDMEEVEHESEVE 471 (471) T ss_pred HHHHHHHHHhcccccCCCCCccccC Confidence 111 0 0001111222222233 No 217 >protein:vir:96179 Length: 468 # NCBI annotation: ORF007 # Family: family:all:125 # MgeID: mge:1602 # MgeName: 37 # Cross-refs: genbank:acc:YP_240075;genbank:gi:66395736;genbank:GeneID:5133166 Probab=96.21 E-value=0.00088 Score=37.35 Aligned_cols=372 Identities=10% Similarity=0.052 Sum_probs=150.6 Q ss_pred Ccch------------------------hhhhhhhh----hh------hcccccCccccccc-ccccCCCCccccchhHH Q lcl|Aclame:pro 1 MAKE------------------------NIVTRIKK----KL------IDNWIDQSASKLYD-FSPWKNKSFWGVINNTL 45 (409) Q Consensus 1 M~~~------------------------~~~~r~~~----~~------~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~ 45 (409) |+.. .++.+..+ .. .+-+.+.... ... .............++.- T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~yY~g~~~i-~~~~~~~~~~~~~~~~~~~~k 79 (468) T protein:vir:96 1 MIDIFWPNEKPYHERVVEQIKPQYETQEEMILRLITKHKENVEDITVGERYYNHQPDV-LFNAPKRNVKGEIDPFKPDWR 79 (468) T ss_pred CccccCCcCceeehheeecccccccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-ccccccccccccccccccccc Confidence 2211 11111100 00 0001111000 000 00000000000111111 Q ss_pred hhhHHHHHHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeE Q lcl|Aclame:pro 46 ETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSK 125 (409) Q Consensus 46 ~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~ 125 (409) +.++.....++..+.-+-+-|+.+..+++.....+...+. | +.......+..+++.+|.+|..+..+.+|.+ . T Consensus 80 i~~n~~~~Iv~~~~~~l~g~p~~~~~~d~~~~~~l~~~~~---n---~~~~~~~~~~~~~~~~G~~~~~v~~d~~~~~-~ 152 (468) T protein:vir:96 80 MYTNYHQNLVDQKVAYAVANPVTYGTEDEKSLKTIQEVLN---H---KWDDKLVDILTAASNKGVEWIQPYVDEQGEF-K 152 (468) T ss_pred cccchHHHHHHHHHhhhccCCceeccCChHHHHHHHHHHh---c---CHHHHHHHHHHHHhhcCeEEEEEEEcCCCce-E Confidence 2244555566666666666676664444333333333432 2 3455666788899999999998888888764 5 Q ss_pred EEeeCCcceEEEEcCC--cceeEE--EEEcCCCeE-EEEccceEEEecCcC----------------------------- Q lcl|Aclame:pro 126 LFLLNPDVVEMLIENQ--SRELYY--SIHAATGNK-LIVHNMDMLHFKHIV----------------------------- 171 (409) Q Consensus 126 l~~l~p~~v~~~~~~~--~~~~~~--~~~~~~g~~-~~~~~~~vih~~~~~----------------------------- 171 (409) +..++|..+.+..++. +....+ .+....... ..+.++.+.|++... T Consensus 153 i~~~~p~~~~~v~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (468) T protein:vir:96 153 TFRVPAEQAIPIWTNKERDELKAFIRLYELDGGERVEYWTANDVTFYELKDGQLIPDYYQGEEHVQAHYYVGNKSMSWNR 232 (468) T ss_pred EEEEcccceEEEEcCCCCCceEEEEEEEEecCceEEEEEeCCeEEEEEEcCCceeecccccccccccceeeccccccCCc Confidence 7778888887776542 222111 111111111 112333333322110 Q ss_pred -c----ccccccccHHHHHHHHHHHHH---HHHHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC Q lcl|Aclame:pro 172 -A----SNMVQGISPIDVLKNTTDFDN---AVRTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE 243 (409) Q Consensus 172 -~----~~~~~G~sp~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 243 (409) | .+...|.|-++.+...++... +-.......+..+ ..++ .+....+ .+.+... ... ++++.++ T Consensus 233 iPvv~~~n~~~g~sd~e~v~~liDa~d~~~S~~~~~~~~~~~p-~lv~-~g~~~~~--~~~~~~~----~~~-~~~i~~~ 303 (468) T protein:vir:96 233 VPFIPFKNNPQEVSDLFMYKTIIDAMDKRLSDTQNTFDEATEL-IYVL-KGYEGED--LEEFMYN----LKY-YKAINVD 303 (468) T ss_pred ccEEEecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCc-eeee-ecCCccc--cchhhhh----hhc-CceEEec Confidence 0 012246666655554444333 2222223334433 2222 2222221 1111111 112 2344332 Q ss_pred --CCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHH Q lcl|Aclame:pro 244 --PGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPI 308 (409) Q Consensus 244 --~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~ 308 (409) ++.+.+.++.......+....+...+.|...-++|..-... ..++- +.++. .+..+...+.-. T Consensus 304 ~d~~~~~~~l~~~~~~~~~~~~~~~l~~~I~~~s~~p~~~~~~-~~~n~-Sg~Alk~~~~~l~~k~~~k~~~~~~~l~~~ 381 (468) T protein:vir:96 304 GDGSGGVDTIQIDVPVQSAKEYLDMLRDYVIEFGQGVDFQQDK-FGNSP-SGIALKFMYSNLDLKANKLKNKTLTALQEL 381 (468) T ss_pred CCCCCcceEEeecCChHHHHHHHHHHHHHHHHHhCcccccccc-cccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Confidence 33344444444445556677778888899998887543221 11111 11111 112222222222 Q ss_pred HHHHHHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccc Q lcl|Aclame:pro 309 VKQYEEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYP 388 (409) Q Consensus 309 ~~~ie~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~ 388 (409) ++.+...+ .... ....+.+.+..-...|..+.++. +.++|+++.-.+++.++.-..+.. -+.. T Consensus 382 ~~li~~~~-----g~~~--d~~~i~i~f~~~~p~d~~e~a~~---~~~~g~iS~et~i~~l~~v~D~~~-------E~~r 444 (468) T protein:vir:96 382 LQYIIDFY-----KLSI--KVQDVEITFNFNVMVNELEQSQI---GVNSQYLSKETVVTNHPWVDDPVA-------EMER 444 (468) T ss_pred HHHHHHHh-----CCCc--ccceeeEEecCCCCcCHHHHHHH---HHhcCCCchHHHHHhCCCCCCHHH-------HHHH Confidence 22222211 1111 11223444445455566655554 556799998888887644211110 0111 Q ss_pred h--hc--ccccccccCCCCCCCCCC Q lcl|Aclame:pro 389 I--DT--PLELRKSLKGGDKNVNES 409 (409) Q Consensus 389 ~--~~--~~~~~~~~~gg~~n~~~~ 409 (409) + +. ....+...+| .+|.+-+ T Consensus 445 i~~E~~~~~~~~~~~~~-~~~~~~~ 468 (468) T protein:vir:96 445 IDQEELALPSIEEGLNG-KENNEPT 468 (468) T ss_pred HHHHHHHHHHHhhccCC-CCCCCCC Confidence 1 11 0111122222 2233333 No 218 >protein:vir:104892 Length: 558 # NCBI annotation: T4-like capsid assembly protein # Family: family:all:1036 # MgeID: mge:1630 # MgeName: P-SSM2 # Cross-refs: genbank:acc:YP_214363;genbank:gi:61806003;genbank:GeneID:3294412 Probab=96.19 E-value=0.0009 Score=37.29 Aligned_cols=401 Identities=13% Similarity=0.105 Sum_probs=161.2 Q ss_pred Ccc-hhhhhhhhhhh---hcccccCcccccccccccCCC--Ccccc------------chhHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MAK-ENIVTRIKKKL---IDNWIDQSASKLYDFSPWKNK--SFWGV------------INNTLETNETIFSAITKLSNSM 62 (409) Q Consensus 1 M~~-~~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~v------------~~~~~~~~~~v~~~i~~ia~~i 62 (409) |.. |++.---+... ....+++....+......++. .+..+ ..+..+.+|.|..||+.|.+.+ T Consensus 1 m~~lfgf~~~~~~~~~~~~~s~~~p~~ddg~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVnea 80 (558) T protein:vir:10 1 MAKLFGFSIEETQKKSTSIISPVPKNNEDGVDNFISSGFYGQYVDIEGAYRSEYDLIRRYREMALHPEADGAIEDVVNEA 80 (558) T ss_pred CcchhcchhhhhhhhccCCccccCCCccccccceeccceeeeeecccchhhhHHHHHHHHHHHhhccchhhHHHHhhcce Confidence 554 33322111111 112222222222211111111 11111 2356788999999999888876 Q ss_pred cc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC---CCceeEE Q lcl|Aclame:pro 63 AS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI---YHQPSKL 126 (409) Q Consensus 63 a~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~---~G~~~~l 126 (409) .- -|+.+.-++-.. ..+..++|+ --+-...+ ..+++.|.+.|..|.-++-+. ...+.+| T Consensus 81 iv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~-ll~F~~~~----~e~fR~WYVDgRiyfHKiid~k~pk~GI~EL 155 (558) T protein:vir:10 81 IVSDLYDSPVEVELSNLNASNTLKKKIREEFRYIKE-MMDFDKKS----HEIFRNWYVDGRVFYLKVIDTKNPQEGIQDL 155 (558) T ss_pred eEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhheeeeEEEEEEEEeCCCccccceee Confidence 42 344332222111 122233333 22333334 445667889999987665432 3358999 Q ss_pred EeeCCcceEEEEcC----------------C------cceeEEEEEcC------------CCeEEEEccceEEEecCcCc Q lcl|Aclame:pro 127 FLLNPDVVEMLIEN----------------Q------SRELYYSIHAA------------TGNKLIVHNMDMLHFKHIVA 172 (409) Q Consensus 127 ~~l~p~~v~~~~~~----------------~------~~~~~~~~~~~------------~g~~~~~~~~~vih~~~~~~ 172 (409) ..|+|..++.++.- . +...+|.|.+. .+..+.++.+-|.+. +... T Consensus 156 r~lDPr~i~~Vr~i~~~~~~~~~~~~~~~~~~~~~~~~~~eyy~Y~~~~~~~~~~~~~~~~~~~vkI~~dAI~y~-hSGL 234 (558) T protein:vir:10 156 RYIDPLKIKFIRQEKRKPGNQDPAIRVRSEQDVVPNPEFEEFYIYTPKVQHPTGMVGQMGGKNSIKIAKDSITMC-TSGL 234 (558) T ss_pred eeeCcccceeeeeeccccccccceeeeecccceeeccceeEeeeecCCcccccccceeecCCCceeechhheeee-cccc Confidence 99999988765432 0 12234444332 122334444444333 2211 Q ss_pred --ccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc-- Q lcl|Aclame:pro 173 --SNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG-- 238 (409) Q Consensus 173 --~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-- 238 (409) .+.-.-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| .|. T Consensus 235 ~d~~~~~i~syLhkAIKp~NQLkmlEDAlVIYRitRAPERRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ 314 (558) T protein:vir:10 235 VDRNKNRVLSYLHKAIKALNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLKEVMSRYRNKLVYDANTGEVR 314 (558) T ss_pred eecCCCeeeecchHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceec Confidence 12223456666665555444333333 22223 3332 2232222345555455544444443432 221 Q ss_pred ----e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccH------HHHH Q lcl|Aclame:pro 239 ----I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN------EELN 297 (409) Q Consensus 239 ----~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~------e~~~ 297 (409) . .++ +.|.+++.|... ..+.=.+-..+..+.+.++++||.+-|......+.+.. |=.. T Consensus 315 ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnLgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF 393 (558) T protein:vir:10 315 DDRKFMSMMEDFWLPRREGGRGTEITTLPGG-QNLGELSDVDYFQKKLYRALGVPESRIAAEGGFNLGRSSEILRDELKF 393 (558) T ss_pred ccchhhhhHhhhcccccCCCCccceeecccc-CCcchHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHH Confidence 1 111 134556666542 22222334457788999999999999965443333222 2223 Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHHHh--cCC--- Q lcl|Aclame:pro 298 RFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKAVR--SGY--- 359 (409) Q Consensus 298 ~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~~--~g~--- 359 (409) ..|+...=.-+..-+.+.|..+|+... +......|+|++. .- . .+-+..|++.+..+-- +.. T Consensus 394 ~KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~ 473 (558) T protein:vir:10 394 AKFVGRLRKRFAAMFNDMLKTQLVLKNIVTPEDWKTMEDHIQYDFLYDNQFAELKESELMEGRLGMLATIEPYIGKYYST 473 (558) T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccch Confidence 334443333344455555556655321 1121233444433 21 1 1112223333222210 111 Q ss_pred ---------cCHHHHHHH-------hCCCCCC--CCCEEee-------------cccccchhcccccccccCCCCCCCCC Q lcl|Aclame:pro 360 ---------YTINDIREW-------EDLPPVE--GGDKPLI-------------SGDLYPIDTPLELRKSLKGGDKNVNE 408 (409) Q Consensus 360 ---------~T~NE~R~~-------~g~~p~~--~gd~~~~-------------~~n~~~~~~~~~~~~~~~gg~~n~~~ 408 (409) +|-.|+-++ ..-+.++ ....++. .....|.+...+.+ +.+++-.-..+ T Consensus 474 dyi~k~ILr~tDeeI~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 552 (558) T protein:vir:10 474 EYVRKRVLRQTDMEIEEIDTQIEDEIQKGIIPDPSQIDPITGEPLPQEGDPAMEGMGEQPVDPDLEAQ-AQAVDAQYSKD 552 (558) T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHhCCCCCCccccChhhccccCccCCchhccCCCCCcccccccc-hhhhhhhhhhh Confidence 233333221 1111111 1111110 00000000000000 00000000000 Q ss_pred C Q lcl|Aclame:pro 409 S 409 (409) Q Consensus 409 ~ 409 (409) . T Consensus 553 ~ 553 (558) T protein:vir:10 553 T 553 (558) T ss_pred h Confidence 0 No 219 >protein:vir:9922 Length: 489 # NCBI annotation: hypothetical protein # Family: family:all:125 # MgeID: mge:178 # MgeName: 315.6 # Cross-refs: genbank:acc:NP_795684;genbank:gi:28876464;genbank:GeneID:1257980 Probab=95.77 E-value=0.0015 Score=36.09 Aligned_cols=388 Identities=12% Similarity=0.073 Sum_probs=154.4 Q ss_pred Ccc-----hhhhhhhhh-------hhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCcee Q lcl|Aclame:pro 1 MAK-----ENIVTRIKK-------KLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLK 68 (409) Q Consensus 1 M~~-----~~~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 68 (409) |.. .+++.+... ...+-+.+.. +............ ...-+..+....+|+..+.-+-.-|+. T Consensus 13 ~~~~~~~~~~~i~~~~~~~~~r~~~~~~yy~g~~-----~i~~~~~~~~~~~-~~~ki~~n~~~~iv~~~~~~l~g~~~~ 86 (489) T protein:vir:99 13 SKLWIDQLKNYISRFKAEQLERLKELKRYYLGDN-----NIKYRPAKTDKYA-ADNRIASDFAKYITVFEQGYMLGVPVE 86 (489) T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-----ccccccccccccC-CcceeecchHHHHHHHHhhhhccCCce Confidence 111 011221111 0111111111 0000000000000 000122455566777777777666776 Q ss_pred EeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeee----cCCCceeEEEeeCCcceEEEEcCCc-- Q lcl|Aclame:pro 69 MYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIER----DIYHQPSKLFLLNPDVVEMLIENQS-- 142 (409) Q Consensus 69 ~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~----~~~G~~~~l~~l~p~~v~~~~~~~~-- 142 (409) +...++.....+..++.. | ....+...+..+++.+|.+|..+.. +..| ...+..++|..+.+..++.. T Consensus 87 ~~~~d~~~~~~l~~~~~~--n---~~~~~~~~~~~~~~~~G~~~~~v~~~~~~d~~~-~~~i~~~~p~~~~~v~dd~~~~ 160 (489) T protein:vir:99 87 YKNENKDLQAAIDLMSVR--N---NEDYHNVKIKTDLSIYGRAYELLTVEKIDDKKT-EVKLYQLPAEQTFVIYDDTYQR 160 (489) T ss_pred eecCChhHHHHHHHHHhh--c---ChhHHHHHHHHHHhhCCeEEEEEeeccCcCCCc-ceEEEEEcccceEEEEcCCCCC Confidence 644433333333333332 2 3445667788899999999977653 3333 35678888888888776533 Q ss_pred cee----EEEEEcCCCeE----EEEccceEEEecCcC-------------------c----ccccccccHHHHHHHHHHH Q lcl|Aclame:pro 143 REL----YYSIHAATGNK----LIVHNMDMLHFKHIV-------------------A----SNMVQGISPIDVLKNTTDF 191 (409) Q Consensus 143 ~~~----~~~~~~~~g~~----~~~~~~~vih~~~~~-------------------~----~~~~~G~sp~~~~~~~i~~ 191 (409) ... +|......+.. ..+.++.+.+++... | .+...|.|.++.+...+.. T Consensus 161 ~~~~~i~~~~~~~~~~~~~~~~~~y~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~n~~~~~s~~~~v~~liDa 240 (489) T protein:vir:99 161 NSLMAVHFYDIDYGSGKRKQIIKAYTSDTIYTYEDYNLETKGMRLKDYEGHFFKGVPVNEYANNEERTGAYESVLDNIDA 240 (489) T ss_pred ceEEEEEEEEEecCCCceEEEEEEEeCCcEEEEEecCCCcccceecccccccCCceeEEEeecCCCCCCchhhhHHHHHH Confidence 122 12222222211 123344444442110 0 0112355655555544433 Q ss_pred HHHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHh---------cCCCceeecCCC-------ceeeecc Q lcl|Aclame:pro 192 DNAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYY---------EENGGILFQEPG-------VEIEPLP 252 (409) Q Consensus 192 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~vl~~g-------~~~~~l~ 252 (409) ...+. ......+..+- ++..+......+.......+.... ...++++.+.++ .+...++ T Consensus 241 ~d~~~s~~~~~~~~~~~~~--l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 318 (489) T protein:vir:99 241 YDLSQSELANFQQDSVNAL--LVIAGNAYTGADENDYLDDGRLNPNGRLAISIGFKKAQVLILDDNPNPNGVKPQAYFLK 318 (489) T ss_pred HHHHHHHHHHHHHHhhhhh--hhhccCCcccccchhhhhhcccccccccccccccccceeeeeccccCccccccceeeee Confidence 22221 11122222211 111111122222222222111100 012233333322 2233344 Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCChhhcC-CcccCccccHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhc Q lcl|Aclame:pro 253 KKYVSEDIVASENLTRERVANVFQLPSIFLN-ARSNTNFAKNE----------ELNRFYLQHTLLPIVKQYEEEFNRKLL 321 (409) Q Consensus 253 ~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~-~~~~~~~~~~e----------~~~~~~~~~~l~P~~~~ie~~ln~~ll 321 (409) ....+..+....+...+.|+..-++|..-.. ...+.++...+ +.....+...+.-.++.+...++..-. T Consensus 319 ~~~~~~~~~~~~~~l~~~i~~~s~~p~~~~~~~~~n~Sg~Al~~~~~~l~~k~~~k~~~~~~~l~~~~~li~~~~~~~~~ 398 (489) T protein:vir:99 319 KEYDTAGSEAYKNRLVADILRFTFTPDTQDMKFSGVQSGESMKYKLMASDNYREKQERLFKKGLMRRLRLAANIWAIKGN 398 (489) T ss_pred ecCChHHHHHHHHHHHHHHHHHhCCcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC Confidence 3334444556677788889999888853321 11111111111 111223333333344333333322111 Q ss_pred ChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcc----ccccc Q lcl|Aclame:pro 322 TKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTP----LELRK 397 (409) Q Consensus 322 ~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~----~~~~~ 397 (409) .......-..+.+.+..-...|..+.++.+.+++ |+++...+.++++.=..++.+ ..+..+..- ..... T Consensus 399 ~~~~~~~~~~i~v~f~~~~p~d~~~~~~~~~kl~--giis~et~~~~l~~v~~~d~~-----~E~~ri~~E~~~~~~~~~ 471 (489) T protein:vir:99 399 EATTYSLVNDTSIVFTPNLPQNDNEIVTAAQNLY--GIVSDQTIFEILNTVTGVDAE-----AELKRLKEEADKKQSLPE 471 (489) T ss_pred ccccccccccceEEeCCCCCcCHHHHHHHHHHHh--ccCCHHHHHHhcCCCCchhHH-----HHHHHHHHHHHHHhcccc Confidence 1000001112445556666778888999888874 889988888876431111100 001111100 00011 Q ss_pred ccCCCCCCCCCC Q lcl|Aclame:pro 398 SLKGGDKNVNES 409 (409) Q Consensus 398 ~~~gg~~n~~~~ 409 (409) ...+|+.++++. T Consensus 472 ~~~~~~~~~~~~ 483 (489) T protein:vir:99 472 PRLVGDASGQEE 483 (489) T ss_pred ccccCCCCCCcC Confidence 112223222222 No 220 >protein:vir:100598 Length: 516 # NCBI annotation: gp20 head portal vertex protein # Family: family:all:1036 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656382;genbank:gi:109290133;genbank:GeneID:4156576 Probab=94.53 E-value=0.0042 Score=33.63 Aligned_cols=391 Identities=9% Similarity=0.074 Sum_probs=167.7 Q ss_pred Ccch---hhhhhhh-----hhhh---cccccCccccccc----------cccc----CCCCcc--c----c-chhHHhhh Q lcl|Aclame:pro 1 MAKE---NIVTRIK-----KKLI---DNWIDQSASKLYD----------FSPW----KNKSFW--G----V-INNTLETN 48 (409) Q Consensus 1 M~~~---~~~~r~~-----~~~~---~~~~~~~~~~~~~----------~~~~----~~~~~~--~----v-~~~~~~~~ 48 (409) |... ++|.+.. +.+. ...+++....+.. .++. .+.... . + ..+..+.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~d~~~~~~~~~~LI~~YR~ma~~ 80 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKQGHESIATPKKDDGATEIEAREGESSYNALMQQFFGIDNNISGTKDLINTYRQLTNN 80 (516) T ss_pred CCchHhcccccchhhHHHHhhhcCCCCcccCCCCccCceeeecCcccccccceeeeeecccCccccHHHHHHHHHHhhhc Confidence 5443 3333311 1111 1122222211111 0111 110000 0 1 23567889 Q ss_pred HHHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEe Q lcl|Aclame:pro 49 ETIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLI 115 (409) Q Consensus 49 ~~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~ 115 (409) |.|..||+.|.+.+.- -|+.+--++-+. ..+..++|+ --+-...++ .+++.|.+.|..|.-+ T Consensus 81 pEvd~Av~eIvneaiv~d~~~~pV~l~l~~~e~s~sik~kI~eeF~~Il~-ll~F~~~~~----~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 81 PEVERAVANIVNEAVVYEKGHKVVSLDLDDTEFSSSIKDKILEEFDEICR-LLDASRKLD----TLFRRWYIDSRIFFHK 155 (516) T ss_pred cchhHHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-Hhccchhhh----HHHHhhhhcceEEEEE Confidence 9999999988887642 344442221111 122233333 223333343 4456788999998764 Q ss_pred e-ecCCCceeEEEeeCCcceEEEEcC-----C------cceeEEEEEcC------------CCeEEEEccceEEEecC-c Q lcl|Aclame:pro 116 E-RDIYHQPSKLFLLNPDVVEMLIEN-----Q------SRELYYSIHAA------------TGNKLIVHNMDMLHFKH-I 170 (409) Q Consensus 116 ~-~~~~G~~~~l~~l~p~~v~~~~~~-----~------~~~~~~~~~~~------------~g~~~~~~~~~vih~~~-~ 170 (409) + .+....+.+|..|+|..++.++.- + +...+|.|... .+.++.++.+-|.+... . T Consensus 156 iid~~k~GI~elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~daI~y~hSGl 235 (516) T protein:vir:10 156 IMPNPKEGIVELRRLDPRHVEYYREIVTSDVGGTSVVKGYREFFVYTTGNEGYAYNGRLFEPNTRIKIPRSAIVYAHSGL 235 (516) T ss_pred EecCcccceeeeeeeCCcceeeEEeeecccCcchhhhhceeeeeeeecCccceeccccccCCCCceecchhheeeeecCc Confidence 3 344456899999999988876422 1 22223434321 11234444444443321 1 Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc-- Q lcl|Aclame:pro 171 VASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG-- 238 (409) Q Consensus 171 ~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-- 238 (409) -+.+...-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+-+..+++....+-..+.| .|. T Consensus 236 ~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~KNklvYDa~TGev~ 315 (516) T protein:vir:10 236 QDCSDRGIVGYLHNAVKPANQLKLLEDALVIYRITRAPERRVFYIDVGNMPNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred ccCCCCceeceehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 1112222255555555554433333333 22223 3332 2232222345554455544444443432 222 Q ss_pred ----e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc---ccHHH----- Q lcl|Aclame:pro 239 ----I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF---AKNEE----- 295 (409) Q Consensus 239 ----~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~---~~~e~----- 295 (409) . .++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|...+.++. .+.|= T Consensus 316 ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~SRl~~e~~~~~~~Gr~~EItRDEi 394 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDGKSVTEVTSLPGA-QTMGEMDDVRWFNKKLYEALRIPLSRMPRDDGGMVIGGQDMAITRDEL 394 (516) T ss_pred cchhhhhhHhhhcccccCCCcccceeecccc-CCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHH Confidence 1 111 134556665542 22333344457788999999999999965444321 22222 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChh-----h-ccccceEEecch--hh----h-hhhHHHHHHHHHHHH--hcCCc Q lcl|Aclame:pro 296 LNRFYLQHTLLPIVKQYEEEFNRKLLTKT-----D-REKNRYFKFNVK--SY----L-RADSATQAEVYFKAV--RSGYY 360 (409) Q Consensus 296 ~~~~~~~~~l~P~~~~ie~~ln~~ll~~~-----~-~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~--~~g~~ 360 (409) ....|+...=.-+..-+.+.|.++|+... + ......|+|++. .- . .+-+..|++.+..+- -+..+ T Consensus 395 KF~KFI~rLR~rFs~lF~~~L~~qLilKgIit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~ 474 (516) T protein:vir:10 395 DFRKFIVQLQHNFEEIFLDPLKTNLIYKKIILESEWEEQINNIKVNFHQDSYYTELKDIETLRQRVDALSQIEPYVGKYV 474 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 22334443333344456666777665432 1 112223444433 21 1 112233333333322 23456 Q ss_pred CHHHHHHH-hCCCCCCCCCEEeecccccchhcccccccccC-C--CCCCCCCC Q lcl|Aclame:pro 361 TINDIREW-EDLPPVEGGDKPLISGDLYPIDTPLELRKSLK-G--GDKNVNES 409 (409) Q Consensus 361 T~NE~R~~-~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~-g--g~~n~~~~ 409 (409) +.+=+|+. |.+...+ +.- .....+...+ | -++++++. T Consensus 475 s~~yi~k~ILr~tDee-----------i~~-~~k~I~~E~~~~~~~~p~~e~~ 515 (516) T protein:vir:10 475 SHDYVMKNILQMTDEQ-----------IAQ-EEKQIEKEANVKRFQNPENEDD 515 (516) T ss_pred chHHHHHHHhcCCHhH-----------HHH-HHHHHHHhhhCCCCCCCCcccc Confidence 66666653 4443221 000 0000011111 1 12222233 No 221 >protein:vir:97376 Length: 320 # NCBI annotation: putative portal protein # Family: family:all:11744 # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762589;genbank:gi:115304290;genbank:GeneID:5130579 Probab=93.95 E-value=0.0021 Score=35.31 Aligned_cols=299 Identities=14% Similarity=0.180 Sum_probs=132.0 Q ss_pred Ccchhhhhhh--hhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccccccc Q lcl|Aclame:pro 1 MAKENIVTRI--KKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYKVVNT 78 (409) Q Consensus 1 M~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~ 78 (409) |+.+|+-.|- ...+....+++... -+-+++.+.....|-.+ +|+.||.-- -.| +.. . T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--------------~~~~~~~~~-~~~-~~~---~ 59 (320) T protein:vir:97 1 MGIFNFKKRETLTPELKESIIRQVTI--EDESPFTGTTDFNVRNE--------------VAESIATYL-GAY-KTS---A 59 (320) T ss_pred CCccccccccccChhHHhhhhheeee--ccCCCcccccccchhhH--------------HHHHHHHHh-hhh-ccc---c Confidence 9998887772 11122222222111 12223333333333222 222222100 000 000 1 Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCcceeEEEEEcCC----C Q lcl|Aclame:pro 79 EVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQSRELYYSIHAAT----G 154 (409) Q Consensus 79 ~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~~~~~~~~~~~~----g 154 (409) ....+|... ..|++.++.+.+..-..|++.... .|..+ .+.+++. |-.....++.++ - T Consensus 60 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~----~~~~~~~~~~~D~FN~~ 121 (320) T protein:vir:97 60 KRLSLLTNN-------PSFLRRLVKHALHNKTTYVYKSPT-YGWLI------TDSMTIE----GLRARLTFTLPDPFNSA 121 (320) T ss_pred ceeeeeeCC-------HHHHHHHHHHhhcccceEEeeCCc-cceee------ecceeee----eeeeeEEEecCccccee Confidence 122233322 358999999999888888776432 23211 1111111 111111111111 0 Q ss_pred eEEEEccceEEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCCCc--eeEEecCCcCC---HHHHHHHHHHH Q lcl|Aclame:pro 155 NKLIVHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQKPD--SFMLKYGSNVS---TEKRQQVLEDF 229 (409) Q Consensus 155 ~~~~~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~ 229 (409) ....++-.|+=. ..++.+|..+-++. ..++.+.++-. +...+.+ .+.++.+ .+ ++-.++.+.++ T Consensus 122 V~mtvpfyD~~I-----Ldnpl~gv~tqe~g-kM~g~a~~~v~---kkL~~~~~IKafi~Td--id~GLee~kD~~~~kI 190 (320) T protein:vir:97 122 VTMTVPFYDVGI-----IDSPLVEVDTEEAN-KMLEAAYSAVM---KKLHNTGAIKAFISSD--IDVGLEKMKEESDSKI 190 (320) T ss_pred EEEEeeeechhh-----hhhhhcccChHHhh-HHHHHHhhhhh---hhccccceeEEEEecc--cchhHHHHHHHHHHHH Confidence 111111111111 12445566665333 23333332222 2222222 2233332 23 34444444444 Q ss_pred HHHhc--C-CCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHH Q lcl|Aclame:pro 230 KQYYE--E-NGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLL 306 (409) Q Consensus 230 ~~~~~--~-~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~ 306 (409) .++.. + =.+.-+++.+-+++++.....-..-.+ ....++..+.-+++|..+|-+. ..+.+..+|+...+. T Consensus 191 k~mq~~A~~~nG~T~i~~~dDI~Qi~pDYS~sn~~D-~~l~~t~alS~y~m~~~IL~Gs------Ate~~~Iaf~~~~V~ 263 (320) T protein:vir:97 191 KAMLATAELLSGYTYIQRGDDVTQMMPDYTTSNVTD-FAAMRTFAASQLSVSDKILDGS------ATDGEKVAVMFRFVE 263 (320) T ss_pred HHHHHHHHHhcCcccccCCcceeeecccccccchhH-HHHHHHHHHhhcCCchhhcccc------CCcceeeehhhHhHH Confidence 44332 2 235788888999988876544433222 3345666788899999999653 336778899999999 Q ss_pred HHHHHH---HHHHHHhhcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCC----CCCE Q lcl|Aclame:pro 307 PIVKQY---EEEFNRKLLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVE----GGDK 379 (409) Q Consensus 307 P~~~~i---e~~ln~~ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~----~gd~ 379 (409) |+++++ |-.|..++-.+ ..+.|-. ..|.+..|.+-- .|.+..| |||+ T Consensus 264 PLL~Q~~~~Ek~Lvy~m~~E------~FVs~mt-------------------TGG~l~S~~~~~-~~~~~~~~~~~~~~~ 317 (320) T protein:vir:97 264 PILEQFREYEPSLIYAMRDE------FFVSFMT-------------------TGGMLNSNRVDG-WGKEKAPNESKGGDV 317 (320) T ss_pred HHHHHhhhcCcceeeeeccc------eeeeeee-------------------cCceeecccccc-cccccCCccccCCcc Confidence 999997 44443332111 1111110 144554444332 3444332 4443 Q ss_pred Eee Q lcl|Aclame:pro 380 PLI 382 (409) Q Consensus 380 ~~~ 382 (409) =-+ T Consensus 318 ~~~ 320 (320) T protein:vir:97 318 GDV 320 (320) T ss_pred cCC Confidence 222 No 222 >protein:vir:101189 Length: 516 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932511;genbank:gi:37651637;genbank:GeneID:2610682 Probab=93.20 E-value=0.0084 Score=31.96 Aligned_cols=391 Identities=9% Similarity=0.057 Sum_probs=170.9 Q ss_pred Ccchhhh---hhhhhh-----hh---cccccCccccccc----------cccc----CCCCccc------c-chhHHhhh Q lcl|Aclame:pro 1 MAKENIV---TRIKKK-----LI---DNWIDQSASKLYD----------FSPW----KNKSFWG------V-INNTLETN 48 (409) Q Consensus 1 M~~~~~~---~r~~~~-----~~---~~~~~~~~~~~~~----------~~~~----~~~~~~~------v-~~~~~~~~ 48 (409) |....+| .+..+. +. ...+++....++. +++. ....... + ..+..+.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~ 80 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINN 80 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhc Confidence 5443333 332211 11 1111111111110 0100 0000000 0 23567889 Q ss_pred HHHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEe Q lcl|Aclame:pro 49 ETIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLI 115 (409) Q Consensus 49 ~~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~ 115 (409) |.|..||+.|.+.+.- -|+.+--++-.. ..+..++|+ --+-...++ .+++.|.+.|..|.-+ T Consensus 81 pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~-ll~F~~~~~----~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 81 PEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCR-LLDASRKLD----TLFRRWYVDSRIFFHK 155 (516) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-Hhccchhhh----HHHhhhhhcceEEEEE Confidence 9999999988887642 344443222111 122333333 223333344 4456788999998764 Q ss_pred e-ecCCCceeEEEeeCCcceEEEEc-----CCcce------eEEEEEcC------------CCeEEEEccceEEEecC-c Q lcl|Aclame:pro 116 E-RDIYHQPSKLFLLNPDVVEMLIE-----NQSRE------LYYSIHAA------------TGNKLIVHNMDMLHFKH-I 170 (409) Q Consensus 116 ~-~~~~G~~~~l~~l~p~~v~~~~~-----~~~~~------~~~~~~~~------------~g~~~~~~~~~vih~~~-~ 170 (409) + .+....+.+|..|+|..++.++. .+|.. .+|.|.+. .+.++.++.+-|.|-.. . T Consensus 156 iid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL 235 (516) T protein:vir:10 156 IMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGL 235 (516) T ss_pred EecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccc Confidence 3 34445689999999998887642 22211 23433321 12345556666555441 1 Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc-- Q lcl|Aclame:pro 171 VASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG-- 238 (409) Q Consensus 171 ~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-- 238 (409) -..+...-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| .|. T Consensus 236 ~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 315 (516) T protein:vir:10 236 MDCSDRGIIGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred eeCCCCceeeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 1112233366666666655544434333 22223 3332 2232222345555555544444444432 222 Q ss_pred ----e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc--c-cHH-----H Q lcl|Aclame:pro 239 ----I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF--A-KNE-----E 295 (409) Q Consensus 239 ----~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~--~-~~e-----~ 295 (409) . .++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|...+.++. + +.| = T Consensus 316 ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEi 394 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDGKSVTEVSSLPGA-QTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDEL 394 (516) T ss_pred cchhhhhhHhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHH Confidence 1 111 134556665542 22333344457788999999999999965544321 2 222 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHHH--hcCCc Q lcl|Aclame:pro 296 LNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKAV--RSGYY 360 (409) Q Consensus 296 ~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~--~~g~~ 360 (409) ....|+...=.-+..-+.+.|..+|+... +......|+|++. .- . .+-+..|++.+..+- -+..+ T Consensus 395 KF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~ 474 (516) T protein:vir:10 395 DFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYV 474 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 22334443333344455555556655421 1122233444433 21 1 112233333333322 23456 Q ss_pred CHHHHHHH-hCCCCCCCCCEEeecccccchhccccccccc-CC--CCCCCCCC Q lcl|Aclame:pro 361 TINDIREW-EDLPPVEGGDKPLISGDLYPIDTPLELRKSL-KG--GDKNVNES 409 (409) Q Consensus 361 T~NE~R~~-~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~-~g--g~~n~~~~ 409 (409) +.+=+|+. |.+...+ +.- .....+... +| -++++++. T Consensus 475 s~~yi~k~ILr~tDee-----------i~~-e~k~I~~E~~~~~~~~p~~~~~ 515 (516) T protein:vir:10 475 SHDYVMKNILQMTEEQ-----------IAQ-EEKQIEQEAGIKRFQNPENEDD 515 (516) T ss_pred chHHHHHHHhcCCHhh-----------HHH-HHHHHHHhhhCCCCCCCCcccc Confidence 66666653 4443221 100 000011111 11 12333333 No 223 >protein:vir:101806 Length: 516 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1580 # MgeName: 31 # Cross-refs: genbank:acc:YP_238883;genbank:gi:66391958;genbank:GeneID:3416633 Probab=93.20 E-value=0.0084 Score=31.96 Aligned_cols=391 Identities=9% Similarity=0.057 Sum_probs=170.9 Q ss_pred Ccchhhh---hhhhhh-----hh---cccccCccccccc----------cccc----CCCCccc------c-chhHHhhh Q lcl|Aclame:pro 1 MAKENIV---TRIKKK-----LI---DNWIDQSASKLYD----------FSPW----KNKSFWG------V-INNTLETN 48 (409) Q Consensus 1 M~~~~~~---~r~~~~-----~~---~~~~~~~~~~~~~----------~~~~----~~~~~~~------v-~~~~~~~~ 48 (409) |....+| .+..+. +. ...+++....++. +++. ....... + ..+..+.+ T Consensus 1 ~~~~~lf~f~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~ 80 (516) T protein:vir:10 1 MKFLDLFKFWDRVDQNEYDERLKLGHESIATPKKDDGATEIETREGEATYNAVMQQFFGIDNNISGTKDLINTYRQLINN 80 (516) T ss_pred CCchHhcccccchhhhHHhhhhcCCcCcccCCCCCCCceeeecCCCcccccceeeeeeccccccchHHHHHHHHHHHhhc Confidence 5443333 332211 11 1111111111110 0100 0000000 0 23567889 Q ss_pred HHHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEe Q lcl|Aclame:pro 49 ETIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLI 115 (409) Q Consensus 49 ~~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~ 115 (409) |.|..||+.|.+.+.- -|+.+--++-.. ..+..++|+ --+-...++ .+++.|.+.|..|.-+ T Consensus 81 pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~ik~kI~eeF~~Il~-ll~F~~~~~----~~fR~WYVDgRi~fhK 155 (516) T protein:vir:10 81 PEVERAVANIVNEAIVYERGHKVVSLDLDDTDFGSNVKEKILEEFDEVCR-LLDASRKLD----TLFRRWYVDSRIFFHK 155 (516) T ss_pred cchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-Hhccchhhh----HHHhhhhhcceEEEEE Confidence 9999999988887642 344443222111 122333333 223333344 4456788999998764 Q ss_pred e-ecCCCceeEEEeeCCcceEEEEc-----CCcce------eEEEEEcC------------CCeEEEEccceEEEecC-c Q lcl|Aclame:pro 116 E-RDIYHQPSKLFLLNPDVVEMLIE-----NQSRE------LYYSIHAA------------TGNKLIVHNMDMLHFKH-I 170 (409) Q Consensus 116 ~-~~~~G~~~~l~~l~p~~v~~~~~-----~~~~~------~~~~~~~~------------~g~~~~~~~~~vih~~~-~ 170 (409) + .+....+.+|..|+|..++.++. .+|.. .+|.|.+. .+.++.++.+-|.|-.. . T Consensus 156 iid~~k~GI~Elr~lDPr~i~~vR~i~~~~~~~~~v~~~~~e~~~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI~y~hSGL 235 (516) T protein:vir:10 156 IMPNPKKGIAELRRLDPRFMEYYREIVTSDIGGTTIVKGYREFFIYTTGNEGYSYNGRIFEPNTRIKIPRSAVVYASSGL 235 (516) T ss_pred EecCccccceeeeeeCCcceeeEeeecccccccchhhhhhhheeeeccCccccccccceeCCCcceeechhheeeecccc Confidence 3 34445689999999998887642 22211 23433321 12345556666555441 1 Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc-- Q lcl|Aclame:pro 171 VASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG-- 238 (409) Q Consensus 171 ~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-- 238 (409) -..+...-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| .|. T Consensus 236 ~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 315 (516) T protein:vir:10 236 MDCSDRGIIGYLHNAVKPANQLKLLEDAMVIYRITRAPERRVFYIDVGNMNNRKATEYVNGIMQSLKNRVVYDSNTGTVK 315 (516) T ss_pred eeCCCCceeeeehhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEeCCCCeec Confidence 1112233366666666655544434333 22223 3332 2232222345555555544444444432 222 Q ss_pred ----e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcc--c-cHH-----H Q lcl|Aclame:pro 239 ----I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNF--A-KNE-----E 295 (409) Q Consensus 239 ----~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~--~-~~e-----~ 295 (409) . .++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|...+.++. + +.| = T Consensus 316 ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEi 394 (516) T protein:vir:10 316 NQKRNLSMTEDYWLMRRDGKSVTEVSSLPGA-QTMGDMDDVRWFNKKLYEALRIPLSRIPRDDGGMVIGGQDTAITRDEL 394 (516) T ss_pred cchhhhhhHhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCcccccCCCCceeeccccchhhHHHH Confidence 1 111 134556665542 22333344457788999999999999965544321 2 222 1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHHH--hcCCc Q lcl|Aclame:pro 296 LNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKAV--RSGYY 360 (409) Q Consensus 296 ~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~--~~g~~ 360 (409) ....|+...=.-+..-+.+.|..+|+... +......|+|++. .- . .+-+..|++.+..+- -+..+ T Consensus 395 KF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~ 474 (516) T protein:vir:10 395 DFRKFVVQLQHDFEEIFLDPLKTNLIYKRIITEDEWDEQINNIKVNFHQDSYYTELKDIETLRLRVDALSQIEPYVGKYV 474 (516) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 22334443333344455555556655421 1122233444433 21 1 112233333333322 23456 Q ss_pred CHHHHHHH-hCCCCCCCCCEEeecccccchhccccccccc-CC--CCCCCCCC Q lcl|Aclame:pro 361 TINDIREW-EDLPPVEGGDKPLISGDLYPIDTPLELRKSL-KG--GDKNVNES 409 (409) Q Consensus 361 T~NE~R~~-~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~-~g--g~~n~~~~ 409 (409) +.+=+|+. |.+...+ +.- .....+... +| -++++++. T Consensus 475 s~~yi~k~ILr~tDee-----------i~~-e~k~I~~E~~~~~~~~p~~~~~ 515 (516) T protein:vir:10 475 SHDYVMKNILQMTEEQ-----------IAQ-EEKQIEQEAGIKRFQNPENEDD 515 (516) T ss_pred chHHHHHHHhcCCHhh-----------HHH-HHHHHHHhhhCCCCCCCCcccc Confidence 66666653 4443221 100 000011111 11 12333333 No 224 >protein:vir:98265 Length: 524 # NCBI annotation: gp20 portal vertex of the head # Family: family:all:1036 # MgeID: mge:1667 # MgeName: RB43 # Cross-refs: genbank:acc:YP_239198;genbank:gi:66391673;genbank:GeneID:3416367 Probab=92.52 E-value=0.011 Score=31.31 Aligned_cols=394 Identities=9% Similarity=0.066 Sum_probs=167.9 Q ss_pred Ccchhhhhhhhh------h-----hhc---ccccCcccccc----------cccccCCCCcc-----c------c-chhH Q lcl|Aclame:pro 1 MAKENIVTRIKK------K-----LID---NWIDQSASKLY----------DFSPWKNKSFW-----G------V-INNT 44 (409) Q Consensus 1 M~~~~~~~r~~~------~-----~~~---~~~~~~~~~~~----------~~~~~~~~~~~-----~------v-~~~~ 44 (409) |+|+++++-++. . +.+ ..+++....+. .+++.....+. . + ..+. T Consensus 4 ~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~g~~~~~y~~~e~~~~~~~eLI~~YR~ 83 (524) T protein:vir:98 4 LGFGNVLSFFKNFAREDEIELEQQLKNDTGSVAPPKNNDGAYEIETDLNNQKYAGVFQQFYSGQDPAIQNKEQLINTYRG 83 (524) T ss_pred cchhhHHHHhhhhhhhhhhhHhhhhcCCcccccCCCCCCCceeecCCCCcceecceeeeeccccccccchHHHHHHHHHH Confidence 455554332221 0 110 11111111111 01111000010 0 0 2356 Q ss_pred HhhhHHHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCe Q lcl|Aclame:pro 45 LETNETIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNA 111 (409) Q Consensus 45 ~~~~~~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a 111 (409) .+.+|.|..||+.|.+.+.- -|+.+--++-.. ..+..++|+ --+-...++ .+++.|.+.|.. T Consensus 84 ma~~pEvd~Av~eIVneaIv~~~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~~----~~fR~WYVDgRi 158 (524) T protein:vir:98 84 IMSYPEVENAVSEIIDDAIVNEQGKDIITMDLAKTNFSKAIQDKIVEEFDNVLN-IYDFDNMGA----RLFRDWYVDSRI 158 (524) T ss_pred HhhccchhhHHHhhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-Hhccchhhh----HHHhhhhhccee Confidence 78899999999988887632 333332222111 122333443 223333343 446678899999 Q ss_pred EEEeeecCCC--ceeEEEeeCCcceEEEE-----cCC-c------ceeEEEEEc------------CCCeEEEEccceEE Q lcl|Aclame:pro 112 YVLIERDIYH--QPSKLFLLNPDVVEMLI-----ENQ-S------RELYYSIHA------------ATGNKLIVHNMDML 165 (409) Q Consensus 112 ~~~~~~~~~G--~~~~l~~l~p~~v~~~~-----~~~-~------~~~~~~~~~------------~~g~~~~~~~~~vi 165 (409) |.-++-+.+. .+.+|..|+|..++.++ +.+ | ...+|.|.+ ..+..+.++.+.|+ T Consensus 159 ~fhkiid~~~~kGI~ELr~lDPr~i~~vr~~~~~~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAIv 238 (524) T protein:vir:98 159 YFHKIMHKDESKGIRELRQLDPRCMELIRESITETLDGGVKVFRGYREFFVYSAPKAGYTYNGQIYQANQKIKIPRSAIV 238 (524) T ss_pred EEEEEEcCCCCcceeeeeeeCCccceeeeeccccccccchhhccceeeeeeeccCCCccccccceecCCCceeechhhee Confidence 9887754433 38999999999997664 111 1 122344432 12345678888888 Q ss_pred EecCcCcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC------- Q lcl|Aclame:pro 166 HFKHIVASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE------- 235 (409) Q Consensus 166 h~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 235 (409) |...-.-...-.-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| T Consensus 239 y~hSGL~d~~~~iisyLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~ 318 (524) T protein:vir:98 239 YAHSGLEDCSNNIIGYLHRAVKPANQLRLLEDAMVIYRITRAPERRVFYIDVGQMGGNKATQYVNNIAQGLKNRVVYDAR 318 (524) T ss_pred eeccCcccCCCCeeeehhHhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecc Confidence 865321111111245555555554433333333 22233 3332 2333223445555555554444444432 Q ss_pred CCc------e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc-Cccc------ Q lcl|Aclame:pro 236 NGG------I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN-TNFA------ 291 (409) Q Consensus 236 ~~~------~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~-~~~~------ 291 (409) .|. . .++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|...+. -+.+ T Consensus 319 TGevrddrk~msMlEDyWLpRReGgrgTEItTLpgg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~EIt 397 (524) T protein:vir:98 319 TGTVKNQQNNLSMTEDYWLMRRDGKAITEVSTLPGG-QNFSDMDDIKWFNRKLYEALRVPLSRMPRDDGGMQIGGGGEIT 397 (524) T ss_pred CceeeccccccchhhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCceeccCCCCccccccccchh Confidence 221 1 122 134556665542 22223344457788999999999999953321 1211 Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhhc------cccceEEecch--hh----h-hhhHHHHHHHHHHHHh-c Q lcl|Aclame:pro 292 KNEELNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR------EKNRYFKFNVK--SY----L-RADSATQAEVYFKAVR-S 357 (409) Q Consensus 292 ~~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~------~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~~-~ 357 (409) ..|=....|+...=.-+..-+.+.|..+|+...-. .....|+|++. .- . .+-+..|++.+..+-- - T Consensus 398 RDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyv 477 (524) T protein:vir:98 398 RDELKFSKFIRTLQIQFSPVLSDPLKTNLIAKKIITEDEWEENVSKISFVFQQDSYYAEVKDIEILERRLNLMSQVEGVV 477 (524) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhcccc Confidence 11223334444433445555556666666543211 11223444433 21 1 1112233333332211 1 Q ss_pred C-CcCHHHHHH-HhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 358 G-YYTINDIRE-WEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 358 g-~~T~NE~R~-~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) | .++.+=+|+ .|.+...+ .-++.+- +...+. --+..+.+.+|= T Consensus 478 Gky~s~dyi~k~ILr~tDeei~~~~k~I~-------~E~k~~--~~~~p~~e~~~f 524 (524) T protein:vir:98 478 GKYVSHKYIMKEILRMSDEDIDEQAKLIE-------EESKEE--RFKNPEAEEENF 524 (524) T ss_pred ccccchHHHHHHHhccCHHHHHHHHHHHH-------HHHhCC--CCcCCccccccC Confidence 2 344444443 23443211 0010000 000000 000001111111 No 225 >protein:vir:104500 Length: 537 # NCBI annotation: gp20 # Family: family:all:1036 # MgeID: mge:1548 # MgeName: P-SSM4 # Cross-refs: genbank:acc:YP_214665;genbank:gi:61806306;genbank:GeneID:3294555 Probab=92.40 E-value=0.012 Score=31.21 Aligned_cols=398 Identities=14% Similarity=0.131 Sum_probs=167.5 Q ss_pred Ccc--hhh-hhhhhh-hhhcccccCcccccccc--cccCCCCccc-----------c-chhHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MAK--ENI-VTRIKK-KLIDNWIDQSASKLYDF--SPWKNKSFWG-----------V-INNTLETNETIFSAITKLSNSM 62 (409) Q Consensus 1 M~~--~~~-~~r~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----------v-~~~~~~~~~~v~~~i~~ia~~i 62 (409) |+. |++ +.+.+. .-....+......+... ++....++.. + ..+..+.+|.|..||+.|.+.+ T Consensus 1 ~~~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~~~~~~~~g~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVnea 80 (537) T protein:vir:10 1 MAQQLFGFSLQRAKKVPKGPSFVQKDSLDGSQPIVGGGYFGYSVDFDGTIRNDHELITRYREMVLNPECDSAVDDVVNET 80 (537) T ss_pred CccccccceeecccccccCCcccCCCcccccceeecccccccccccccccchHHHHHHHHHHHhhccchhhHHHHhhcce Confidence 654 222 222111 11111222222111111 1100111111 1 2356788999999999888876 Q ss_pred cc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC---CCceeEE Q lcl|Aclame:pro 63 AS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI---YHQPSKL 126 (409) Q Consensus 63 a~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~---~G~~~~l 126 (409) .- -|+.+.-++-.. ..+..++|+ --+-...+ ..+++.|.+.|..|.-++-+. ...+.+| T Consensus 81 iv~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~-ll~F~~~~----~e~fR~WYVDgRi~fhKiid~k~pk~GI~EL 155 (537) T protein:vir:10 81 ICGNFDDVPISIDLHNLKQSEKIKKLIRSEFDEILR-LLDFDNRA----YEIFRRWYVDGRLFFHKVIDPKKPRQGLVEL 155 (537) T ss_pred eEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhheeeeEEEEEEEEeCCCccccceee Confidence 43 343432222111 122333443 22333334 445667889999987665432 3358999 Q ss_pred EeeCCcceEEEEc-----CCcc-------------eeEEEEEc-----CCCeEEEEccceEEEecC-cCcccccccccHH Q lcl|Aclame:pro 127 FLLNPDVVEMLIE-----NQSR-------------ELYYSIHA-----ATGNKLIVHNMDMLHFKH-IVASNMVQGISPI 182 (409) Q Consensus 127 ~~l~p~~v~~~~~-----~~~~-------------~~~~~~~~-----~~g~~~~~~~~~vih~~~-~~~~~~~~G~sp~ 182 (409) ..|+|..++.++. .++. ..+|.|.+ ..+..+.++.+-|.+... .-..+..+.+|-+ T Consensus 156 r~lDPr~i~~vR~i~~~~~~~~~~~~~~~~v~~~~~eyf~ynp~g~~~~~~~~vkI~~dAI~y~hSGl~d~n~~~i~syL 235 (537) T protein:vir:10 156 RYVDPRKIRKVTEYEAKRPEALRTQDLNQQLTQQSASYFLYNPKGLKNSTNQGMKIAPDSIAYCHSGIQDLNKNMVLSHL 235 (537) T ss_pred eeeCCccceeeEeecccCCccceEEecceeeeecccceeeeccccccccCCCceeccHhheeeecccceeCCCCeeeeee Confidence 9999998866542 1111 11222322 123345566644443321 1122345567777 Q ss_pred HHHHHHHHHHHHHHHHH-HHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc------e-eec--- Q lcl|Aclame:pro 183 DVLKNTTDFDNAVRTFN-LTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG------I-LFQ--- 242 (409) Q Consensus 183 ~~~~~~i~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------~-~vl--- 242 (409) ..+...+.-..-++... .... ..|- ..+..--+.+.+..+++....+-..+.| .|. . .++ T Consensus 236 hkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDy 315 (537) T protein:vir:10 236 HKAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDF 315 (537) T ss_pred hhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhhhhh Confidence 77776665444444332 2233 3332 2233223345555555544444444432 221 1 112 Q ss_pred -------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccH------HHHHHHHHHHHHHHHH Q lcl|Aclame:pro 243 -------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN------EELNRFYLQHTLLPIV 309 (409) Q Consensus 243 -------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~------e~~~~~~~~~~l~P~~ 309 (409) +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|......+.... |=....|+...=.-+. T Consensus 316 WLPRReGgrgTEItTLpGg-qnlgem~DV~YF~kKLy~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs 394 (537) T protein:vir:10 316 WLPRREGGRGTEISTLPGG-QNLGELEDVKYFQKKLYKALNVPSSRLETETTFNIGRAAEITRDEVKFQKFIARLRKRFS 394 (537) T ss_pred cccccCCCcccceeecccc-CCcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHH Confidence 134556665542 22333344457788999999999999965443333222 2223334443333344 Q ss_pred HHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHHH--hcCC------------cCH Q lcl|Aclame:pro 310 KQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKAV--RSGY------------YTI 362 (409) Q Consensus 310 ~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~--~~g~------------~T~ 362 (409) .-+.+.|..+|+... +......|+|++. .- . .+-+..|++.+..+- -+.. +|- T Consensus 395 ~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~s~dyi~k~ILr~tD 474 (537) T protein:vir:10 395 ELFVDLLKTQLILKGICSIEEWEEMKEHIQFDFIADNYFTELKEIEIRNERMNEVAQMDPYVGKYFSANYIRTKVLKQTE 474 (537) T ss_pred HHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccCH Confidence 455555556655321 1121233444433 21 1 111222333332221 0011 344 Q ss_pred HHHHHH-------hCCCCC--C----CCC------EEeecccccchhcc--cccccccCCCCC Q lcl|Aclame:pro 363 NDIREW-------EDLPPV--E----GGD------KPLISGDLYPIDTP--LELRKSLKGGDK 404 (409) Q Consensus 363 NE~R~~-------~g~~p~--~----~gd------~~~~~~n~~~~~~~--~~~~~~~~gg~~ 404 (409) .|+-++ ..-+.. | +++ ..+.|+.+.|-..+ .+.....+||+- T Consensus 475 eeI~~~~k~I~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (537) T protein:vir:10 475 SEIKEIDKEIKQEIADGVIMDPQAMQAMEMGIGDEEPVPEGGEEPQTDPNSAVSPADQKRGEL 537 (537) T ss_pred HHHHHHHHHHHHHhhCCCCCCcccccccccCCCCcccCCCCCCCcccCCccCCCCCCccCCCC Confidence 443321 111111 1 111 11222222221110 111112233333 No 226 >protein:vir:106999 Length: 564 # NCBI annotation: portal vertex protein gp20 # Family: family:all:1036 # MgeID: mge:1459 # MgeName: S-PM2 # Cross-refs: genbank:acc:YP_195138;genbank:gi:58532915;interpro:IPR010823;uniprot:Q5GQN4;genbank:GeneID:3260496 Probab=92.15 E-value=0.013 Score=30.99 Aligned_cols=403 Identities=12% Similarity=0.107 Sum_probs=168.9 Q ss_pred Ccc-hhh-hhhhhhhhhcccccCccccccc-c-ccc----CCCCc--------ccc-chhHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MAK-ENI-VTRIKKKLIDNWIDQSASKLYD-F-SPW----KNKSF--------WGV-INNTLETNETIFSAITKLSNSMA 63 (409) Q Consensus 1 M~~-~~~-~~r~~~~~~~~~~~~~~~~~~~-~-~~~----~~~~~--------~~v-~~~~~~~~~~v~~~i~~ia~~ia 63 (409) |.. |++ +.+....-....++........ . +++ ....+ .-+ ..+..+.+|.|..||+.|.+.+. T Consensus 1 m~~lfgf~i~~~~~~~~~S~vpp~~~~~~~~i~~g~~g~~v~~~g~~~~~n~~eLI~~YR~ma~~pEVd~Av~eIVneaI 80 (564) T protein:vir:10 1 MSQLFGFLINEKEGQKGQSPVPPNDEASVSTVAGGYFGTYVDTSGGQNSRNEYELIRRYRDMSLHPEVDSAIDEIVNEFV 80 (564) T ss_pred CcchhcceeeeeccCCCCCcccCCcCCChhhhhccccceeeecccccchhhHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 665 333 2222221122222222211111 0 000 00000 001 23567889999999998888753 Q ss_pred c-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec---CCCceeEEE Q lcl|Aclame:pro 64 S-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD---IYHQPSKLF 127 (409) Q Consensus 64 ~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~---~~G~~~~l~ 127 (409) - -|+.|--++... ..+..++|+ --+-...++ .+++.|.+.|..|.-++-+ ....+.+|. T Consensus 81 v~d~~~~pV~vdL~~~~~s~siK~kI~eEF~~Il~-ll~F~~~~~----e~fR~WYVDgRi~fHkiid~~~pk~GI~eLr 155 (564) T protein:vir:10 81 VNDGDDKPVEVDLQNLEIGSGVKKKIRDEFNRILR-MMNFNVNAH----EIIRNWYVDGRSHYHKVIDLDNPKKGILELR 155 (564) T ss_pred EecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-Hhccchhhh----HHHhhhhhcceEEEEEEeeCCChhhhhhhhh Confidence 2 233332221111 122333443 233333444 4456788999998765433 222388999 Q ss_pred eeCCcceEEEE----cC--Ccc---------------eeEEEEEcC----------------CCeEEEEccceEEEecCc Q lcl|Aclame:pro 128 LLNPDVVEMLI----EN--QSR---------------ELYYSIHAA----------------TGNKLIVHNMDMLHFKHI 170 (409) Q Consensus 128 ~l~p~~v~~~~----~~--~~~---------------~~~~~~~~~----------------~g~~~~~~~~~vih~~~~ 170 (409) .|+|..++.++ +. .+. ..+|.|.+. .+..+.++.+.|.|-..- T Consensus 156 ~lDPr~i~~vr~i~~~~~~~~~~v~k~~~~~~~y~~~~Eyy~Ynp~~~~g~~~~~~~~~~~~~~~~ikI~~daI~y~hSG 235 (564) T protein:vir:10 156 YIDSLKIRKVRQKLKDVDPNRKEIEKGTALQYDYGDFIEYYIYNPKGFAGNIPMVTGSMDWSNQEGIKIASDAIAQSTSG 235 (564) T ss_pred hhcccceeeeeeeccccccccceeeeeeeeeccccccccceeeccccccCcccccccccccccccceeechhhcceeccc Confidence 99999777654 11 111 124444422 122456677777766531 Q ss_pred -CcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc- Q lcl|Aclame:pro 171 -VASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG- 238 (409) Q Consensus 171 -~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~- 238 (409) -..+...-+|-+..+...+.-..-++.. ..... ..|- .++..--+.+-+..+++....+-..+.| .|. T Consensus 236 L~d~~~~~i~gyLhkAIKp~NQLkmlEDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev 315 (564) T protein:vir:10 236 LMDLNKKMTLSFLHKAIKSLNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKVKAEQYLRDVMSRYRNKLVYDGQTGEI 315 (564) T ss_pred ceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCcee Confidence 1223334456666666555444333333 22223 3332 2232222345555455544444444432 221 Q ss_pred -----e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc-Cccc-c--H---HH Q lcl|Aclame:pro 239 -----I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN-TNFA-K--N---EE 295 (409) Q Consensus 239 -----~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~-~~~~-~--~---e~ 295 (409) . .++ +.|.+++.|... ..+.=.+-..+..+.+.++++||.+-|..... .+.+ . + |= T Consensus 316 rddrk~msMlEDyWLPRReGgrgTEItTLpGg-qnLgem~DV~YF~kKLY~aLnVP~SRl~~e~~~f~~Gr~~EItRDEi 394 (564) T protein:vir:10 316 RDDKKHMSMLEDFWLPRREGGRGTEITTLPGG-QNLGELKDVEYFKKKLYNSLNLPPSRLTDDNKAFNLGKSTEILRDEL 394 (564) T ss_pred cccchhhhhHhhhcccccCCCcccceeecccc-CCcchHHHHHHHHHHHHHHhCCCcccccCCCceeecccccchhHHHH Confidence 1 111 134566666542 22222334457788999999999999965432 2211 1 1 22 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecc--hhh----h-hhhHHHHHHHHHHH---H---- Q lcl|Aclame:pro 296 LNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNV--KSY----L-RADSATQAEVYFKA---V---- 355 (409) Q Consensus 296 ~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~--~~l----~-~~d~~~~~~~~~~~---~---- 355 (409) ....|+...=.-+..-+.+.|..+|+... +......|+|++ +.- . .+-+..|++.+..+ + T Consensus 395 KF~KFI~RLR~rFs~lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~ 474 (564) T protein:vir:10 395 KFTKFIGRLRKRFAQLFHDILKTQLILKGIITPEDWDDMEEHIQYDFLFDNHFNELKEQEMQLQRVNLATQMDPFVGKYF 474 (564) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 23344443333444555555666655321 112123344443 221 1 11122233333222 0 Q ss_pred -----hcC--CcCHHHHHHH---------hCC--CCC--CCCCEEeec-ccccchhccccc------c-----cccC--C Q lcl|Aclame:pro 356 -----RSG--YYTINDIREW---------EDL--PPV--EGGDKPLIS-GDLYPIDTPLEL------R-----KSLK--G 401 (409) Q Consensus 356 -----~~g--~~T~NE~R~~---------~g~--~p~--~~gd~~~~~-~n~~~~~~~~~~------~-----~~~~--g 401 (409) ..- -+|-.|+-++ .|+ +|. +.||..-++ ..+.|.+..... + ++.+ . T Consensus 475 S~dyi~k~ILr~tDeei~~~~kqI~~E~k~~~~~~P~e~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~ 554 (564) T protein:vir:10 475 STEYIRRKILMQTENEFKEIDKQMKSDIESGLAIDPIQVNMLDDMEKQNQAFAPELQAAQDDLAAEREIKKLNSAPKPPP 554 (564) T ss_pred chHHHHHHHhccCHHHHHHHHHHHHHHhhcCCCCCchhhhcCCCccCCCCcCCcchhhhccccccccChhhhccCCCCCC Confidence 011 1344444331 122 232 134432222 223333221110 0 0000 0 Q ss_pred CCCCCCCC Q lcl|Aclame:pro 402 GDKNVNES 409 (409) Q Consensus 402 g~~n~~~~ 409 (409) +.++.++. T Consensus 555 ~~~~~~~~ 562 (564) T protein:vir:10 555 SQQSKSQS 562 (564) T ss_pred CCCCcCcC Confidence 11111111 No 227 >protein:vir:105154 Length: 525 # NCBI annotation: conserved phage-related protein # Family: family:all:6660 # MgeID: mge:1466 # MgeName: C-St # Cross-refs: genbank:acc:YP_398597;genbank:gi:80159853;genbank:GeneID:3772992 Probab=91.90 E-value=0.014 Score=30.80 Aligned_cols=393 Identities=13% Similarity=0.131 Sum_probs=154.2 Q ss_pred Ccchhhhhhh-------hhhhhcccc----cCcccccc---cccccCCCCcccc--chhHHhhhHHHHHHHHHHHHhhcc Q lcl|Aclame:pro 1 MAKENIVTRI-------KKKLIDNWI----DQSASKLY---DFSPWKNKSFWGV--INNTLETNETIFSAITKLSNSMAS 64 (409) Q Consensus 1 M~~~~~~~r~-------~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~v--~~~~~~~~~~v~~~i~~ia~~ia~ 64 (409) |.-. +.|- ..++.++++ ........ ....|..+..... ..+-+.-.-++-.-|..+-+.|-+ T Consensus 27 ~~n~--~~~~y~ty~~~~~~f~~gfv~~~~~ng~i~~v~~~~l~~~f~npd~~~~~i~~l~~y~yi~~~~v~ql~~li~~ 104 (525) T protein:vir:10 27 HINE--LERQYNTYDDVVDAFIDGFVMDLCNNGKIKTVNLDTLQLWFNNPDKYINNIVNLLTYYYIIDGNVFQLYDLIFS 104 (525) T ss_pred HHhh--hhhhcchhhhHHHHHHHHHHHHhhcCCceeeeeHHHHHhhhcChHHHHHHHHHHHHHhhhhcchHHHHHHHHHh Confidence 2221 1111 011111111 00000000 0000111111100 000000001111223333344555 Q ss_pred Cce---eE--eeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeE--------------------EEeeecC Q lcl|Aclame:pro 65 LPL---KM--YEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAY--------------------VLIERDI 119 (409) Q Consensus 65 lp~---~~--~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~--------------------~~~~~~~ 119 (409) ||- .+ ..+.+....++. +||..-..-.-...+-+.++.++...|.-. +++.... T Consensus 105 lp~l~y~i~~~~~~k~~~~~~s-~~n~~l~k~i~hk~ltrdll~q~a~~gtlig~wlg~~~~py~~vf~~~kyvfp~~r~ 183 (525) T protein:vir:10 105 LPPLDYQIKVLKRDKDYKEDLS-TINLYLEKKIQHKQLTRDLLVQLAHSGTLIGTWLGSKREPYFNVFNNLKYVFPYGRA 183 (525) T ss_pred cCCcceeehhhhhccchhhHHH-HHHHHHHHhHHHHHHHHHHHHHhhccCceeEeeecCCCCcchhhhhhhhhhcccccc Confidence 552 22 122222222221 222221111112233333344444444321 1111111 Q ss_pred CCceeEEEeeCCcceEEEEc---------------CCcceeEEEEEcCCC---eEEEEccceEEEecCcCcccccc-ccc Q lcl|Aclame:pro 120 YHQPSKLFLLNPDVVEMLIE---------------NQSRELYYSIHAATG---NKLIVHNMDMLHFKHIVASNMVQ-GIS 180 (409) Q Consensus 120 ~G~~~~l~~l~p~~v~~~~~---------------~~~~~~~~~~~~~~g---~~~~~~~~~vih~~~~~~~~~~~-G~s 180 (409) +|+.+... +-..+.-..+ ......+-.|...+. +-..+|.+.++|+|...+....+ |.| T Consensus 184 ~g~~v~vi--d~~~f~~~~~~~r~~~~~~lsp~i~~~~y~~~~~~~~~~~~~~r~i~LP~e~t~~lr~~tl~rnqrlG~s 261 (525) T protein:vir:10 184 KGKMVAVI--DLQWFDEMSELERKLTFENLSPLITENKYKKWKEYNGENEDALRYIMLPISKTLVARIHTLSRNQRLGIP 261 (525) T ss_pred CCceEEEE--ehHHhhhhhHHHHHHHHHhhchhhhhhhhhHHhhcccccchhheeeecccceeEEeeecccccCcccCcc Confidence 22211110 0000000000 000000111111111 23568899999999876654444 888 Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhcCCCceeEEecCCc------CCHHHHHHHHHHHHHHh----cCCCceeec--CCC Q lcl|Aclame:pro 181 PIDVLKNTTDFDNA---VRTFNLTEMQKPDSFMLKYGSN------VSTEKRQQVLEDFKQYY----EENGGILFQ--EPG 245 (409) Q Consensus 181 p~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~vl--~~g 245 (409) .+......|..... +++..+....++ ..+++.++. +.+...+++-+..+.+. ....++.|+ +.= T Consensus 262 ~vtp~l~dI~hk~klrd~EqsIA~kii~a-~avLk~gg~~gn~mk~p~~~kqkil~gVk~aleK~~kdK~Gi~vi~~Pdf 340 (525) T protein:vir:10 262 YGTQTLFDIQHKQKLRDLEQSIADKIIKA-MAVLKFRGKDDNDSKVKESAKRKVLAGVKRALEKGVKDKNGIACIAMPDF 340 (525) T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhh-heeeeeccccCccccCchHHHHHHHHHHHHHHhcccccccCeEEEeccce Confidence 77776666655443 344444444333 334444332 33333344444444333 333345443 332 Q ss_pred ceee--ecc-----CChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 246 VEIE--PLP-----KKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYEEEFNR 318 (409) Q Consensus 246 ~~~~--~l~-----~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie~~ln~ 318 (409) ++++ ++. ..+. --+...++|-.|+|++.+++++. .+||++..-....||+ .|.-+++.||+..+. T Consensus 341 a~~efp~ik~~~~glDg~------K~d~I~~DI~~A~GlS~sL~nGd-ggNyAtaslnld~fyk-kigVm~e~Iee~y~k 412 (525) T protein:vir:10 341 ATFEFPEIKNGDKTLDPK------KYDSIDNDITNATGISQVLTNGT-KGNYASAKLNLDVFYK-KIGVMLEIIEEIYNQ 412 (525) T ss_pred eecccccccCcccCCCch------hhhhhhhhhhhhhccceeeecCC-CCceeeeeeeHHHHHH-HHHHHHHHHHHHHHH Confidence 3333 322 2233 22345678999999999999764 5688887777777887 467788888855553 Q ss_pred hhcC-hhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC------------C-CEEeecc Q lcl|Aclame:pro 319 KLLT-KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG------------G-DKPLISG 384 (409) Q Consensus 319 ~ll~-~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~------------g-d~~~~~~ 384 (409) ||. -....++.-+-|+.+.-...+.+++.+.+-++...|+. .--+....|..--|. . ++.+-|. T Consensus 413 -L~d~Vl~~~k~~nyifnydkd~pi~~kkk~d~LIkL~d~g~s-~k~vldl~gis~e~y~E~s~yEtE~lkl~EKi~pp~ 490 (525) T protein:vir:10 413 -LIDIILGEEKGCNYIFQYNKDTPIEREKKLDTLIKLEAQGYS-AKYVLDILGISSEEYFEESIYEIEKLKLREKIMPPL 490 (525) T ss_pred -HHhhhcCcccCcceEEecCCCchhhhhhhhhhhhhhhccchh-hhhhhhhhccCcchHHHHHHHHHHHHHHhhhccccc Confidence 332 12223444455666666677888888888888888874 333333444322110 0 1111111 Q ss_pred cccchhcccccc-cccC-CCCCCCCCC Q lcl|Aclame:pro 385 DLYPIDTPLELR-KSLK-GGDKNVNES 409 (409) Q Consensus 385 n~~~~~~~~~~~-~~~~-gg~~n~~~~ 409 (409) +...+.--.... ...+ .++++.+.+ T Consensus 491 ~~~v~SGk~~n~iG~P~~dd~~~~dat 517 (525) T protein:vir:10 491 NTNVLSGKDGNDIGSPKLDDSDSSDAT 517 (525) T ss_pred cceeeeccccccccCCccCCCcchhhh Confidence 111110000000 0000 111111111 No 228 >protein:vir:81017 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469501;genbank:gi:157311458;genbank:GeneID:5602316 Probab=90.94 E-value=0.018 Score=30.12 Aligned_cols=393 Identities=10% Similarity=0.109 Sum_probs=164.5 Q ss_pred Ccc-hhh-hhhhhhhhhc---ccccCccccccc--------c-cccC--CCCcccc------------chhHHhhhHHHH Q lcl|Aclame:pro 1 MAK-ENI-VTRIKKKLID---NWIDQSASKLYD--------F-SPWK--NKSFWGV------------INNTLETNETIF 52 (409) Q Consensus 1 M~~-~~~-~~r~~~~~~~---~~~~~~~~~~~~--------~-~~~~--~~~~~~v------------~~~~~~~~~~v~ 52 (409) |.+ ++. ..+..+.+.+ ..+++....++. + ...+ ...+..+ ..+..+.+|.|. T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~s~~~P~~~dGa~~i~~~~~~~~~~~gg~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd 87 (521) T protein:vir:81 8 LARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNLPASAWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNHEVE 87 (521) T ss_pred hHhhcCchhhhHHhhhccCccccccCCCCCCceEecccCCCcceeecceeeeecccccchhhHHHHHHHHHHHhhccchh Confidence 333 111 1111111111 111111111110 0 0000 0011111 235678899999 Q ss_pred HHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC Q lcl|Aclame:pro 53 SAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI 119 (409) Q Consensus 53 ~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~ 119 (409) .||+.|.+.+.- -|+.+--++-+. ..+..++|+ --+-...+ ..+++.|.+.|..|.-++-+. T Consensus 88 ~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~----~~~fR~WYVDgRi~fhkiid~ 162 (521) T protein:vir:81 88 NAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLN-TIQFDRRG----QDMFRRWYVDSRIFFHKIIGK 162 (521) T ss_pred hHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhhhhcceEEEEEEEcC Confidence 999988887642 344443222111 122333443 22333334 344667889999998877443 Q ss_pred --CCceeEEEeeCCcceEEEEcC-----C------cceeEEEEEcC------------CCeEEEEccceEEEecC-cCcc Q lcl|Aclame:pro 120 --YHQPSKLFLLNPDVVEMLIEN-----Q------SRELYYSIHAA------------TGNKLIVHNMDMLHFKH-IVAS 173 (409) Q Consensus 120 --~G~~~~l~~l~p~~v~~~~~~-----~------~~~~~~~~~~~------------~g~~~~~~~~~vih~~~-~~~~ 173 (409) ...+.+|..|+|..++.++.- . +...+|.|.+. .+..+.++.+-|.+... .-+. T Consensus 163 ~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~hSGl~d~ 242 (521) T protein:vir:81 163 NPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYAHSGLMDC 242 (521) T ss_pred CccccceeeeeeCCcceeeeeeecccccCccceecceeeeeeeecCCccccccceeecCCcceeechhheeeeeccceeC Confidence 345899999999988876421 1 11223444332 12334455555444321 1122 Q ss_pred cccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc----- Q lcl|Aclame:pro 174 NMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG----- 238 (409) Q Consensus 174 ~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----- 238 (409) +...-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| .|. T Consensus 243 ~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlpk~KAeqYl~~im~k~kNklvYDa~TGev~ddr 322 (521) T protein:vir:81 243 DDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLKNQQ 322 (521) T ss_pred CCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeecccccccccc Confidence 3333456666666555544434333 22223 3332 2333223445555555544444444432 121 Q ss_pred --eeec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCc-----cccH---HHHHH Q lcl|Aclame:pro 239 --ILFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTN-----FAKN---EELNR 298 (409) Q Consensus 239 --~~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~-----~~~~---e~~~~ 298 (409) ..++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|+..+.+. .+.+ |=... T Consensus 323 k~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~Gr~~EItRDEiKF~ 401 (521) T protein:vir:81 323 ANLSMTEDYWLQRRDGKAITDVTTLPGA-SGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDELEFS 401 (521) T ss_pred cccchhhhhcccccCCCcccceeecccC-CCCChHHHHHHHHHHHHHHhCCccccccCCCCcceeccccchhhHHHHHHH Confidence 1122 134556665542 2222333445778899999999999995433221 1111 22333 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhc------cccceEEecch--hh----h-hhhHHHHHHHHHHHHh--cCCcCHH Q lcl|Aclame:pro 299 FYLQHTLLPIVKQYEEEFNRKLLTKTDR------EKNRYFKFNVK--SY----L-RADSATQAEVYFKAVR--SGYYTIN 363 (409) Q Consensus 299 ~~~~~~l~P~~~~ie~~ln~~ll~~~~~------~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~~--~g~~T~N 363 (409) .|+...=.-+..-+.+.|..+|+...-. .....|+|++. .- . .+-+..|++.+..+-- +..++.+ T Consensus 402 KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~s~d 481 (521) T protein:vir:81 402 KFIRTRQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYFSNQ 481 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEEeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchH Confidence 4444433445555556666666543211 11223444433 21 1 1112233333332211 1123444 Q ss_pred HHHH-HhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 364 DIRE-WEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 364 E~R~-~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) =+|+ .|.+...+ .-++.+ .. +.....--..+.+.++ T Consensus 482 yi~k~ILr~tDeei~~~~k~I--------~~--E~~~~~~~~p~~~~~~ 520 (521) T protein:vir:81 482 TVMRDILKYTDDQMDTEKKQI--------EE--EANDPRFKQTPDEIED 520 (521) T ss_pred HHHHHHhccCHHHHHHHHHHH--------HH--HhhCCCCCCCcccccC Confidence 4443 23443211 000000 00 0000000001111111 No 229 >protein:vir:103177 Length: 533 # NCBI annotation: gp131 # Family: family:all:1036 # MgeID: mge:1583 # MgeName: Syn9 # Cross-refs: genbank:acc:YP_717798;genbank:gi:113200635;genbank:GeneID:4239186 Probab=89.05 E-value=0.029 Score=29.05 Aligned_cols=403 Identities=12% Similarity=0.097 Sum_probs=166.7 Q ss_pred Ccc-hhh-hhhhhhhh-hcccccCcccccccc--cccCCCCcccc------------chhHHhhhHHHHHHHHHHHHhhc Q lcl|Aclame:pro 1 MAK-ENI-VTRIKKKL-IDNWIDQSASKLYDF--SPWKNKSFWGV------------INNTLETNETIFSAITKLSNSMA 63 (409) Q Consensus 1 M~~-~~~-~~r~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~v------------~~~~~~~~~~v~~~i~~ia~~ia 63 (409) |.. |++ +.+.+... ...+++.....+... ++.....+..+ ..+..+.+|.|..||+.|.+.+. T Consensus 1 m~~lfg~~i~~~~~~~~~~s~~~~~~~dg~~~i~~~~~~~~~~~~e~~~~~~~eLI~~YR~ma~~pEvd~Av~eIVneai 80 (533) T protein:vir:10 1 MSQLFGFSLERAKKAPKGPSFVQKDNLDGSQPVSGGGYYGYTVDFDGQVRNEYQLISRYREMVLQPECDSAVDDIVNETI 80 (533) T ss_pred CccccccccccccccccCCCCCCCCcccccceeecccccceeeecccccchHHHHHHHHHHHhhccchhhHHHHhhccee Confidence 765 333 33332211 112222222222211 00001111111 23567889999999998888764 Q ss_pred c-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeec---CCCceeEEE Q lcl|Aclame:pro 64 S-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERD---IYHQPSKLF 127 (409) Q Consensus 64 ~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~---~~G~~~~l~ 127 (409) - -|+.+.-+.-+. ..+..++|+ --+-...+ ..+++.|.+.|..|.-++-+ ....+.+|. T Consensus 81 v~d~~~~pV~i~Ld~~~~s~~iK~kI~eEF~~Il~-ll~F~~~~----~e~fR~WYVDgRi~fHkiid~~~pk~GI~ELr 155 (533) T protein:vir:10 81 CGNFDDVPVSVELSNLKVSDKIKKLIREEFGEILR-LLDFENRS----YEIFRRWYVDGRLFYHKVIDPDNPQGGLIELR 155 (533) T ss_pred eecCCCceEEEEecccccchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhhhhcceEEEEEEecCCCccccceeee Confidence 3 334433222111 122333443 22233334 44466788999998765433 334589999 Q ss_pred eeCCcceEEEEcC-----Cc-------------ceeEEEEEcC-----CCeEEEEccceEEEecC-cCcccccccccHHH Q lcl|Aclame:pro 128 LLNPDVVEMLIEN-----QS-------------RELYYSIHAA-----TGNKLIVHNMDMLHFKH-IVASNMVQGISPID 183 (409) Q Consensus 128 ~l~p~~v~~~~~~-----~~-------------~~~~~~~~~~-----~g~~~~~~~~~vih~~~-~~~~~~~~G~sp~~ 183 (409) .|+|..++.++.- ++ ...+|.|++. .+..+.++.+-|.+... .-+.+...-+|-+. T Consensus 156 ~lDPr~i~~vr~i~~~~~~~~~~~~~~~~v~~~~~eyf~Ynp~g~~~~~~~~vkI~~dAI~y~hSGl~d~~~~~i~syLh 235 (533) T protein:vir:10 156 YIDPRKIRKINETEQKRPEQLRGLPLNQQLSPKSAEYFLYDPKGLKNSTTQGLKIAPDSICYVHSGIMDLNKNMTLSHLH 235 (533) T ss_pred eccccceeeeeeeeccCCCccceeecchhhhccceeeeeeccccccccCCCceecchhheeeeeccceeCCCCceeccch Confidence 9999998875311 11 1123334322 12345566655444321 11222333456666 Q ss_pred HHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc------e-eec---- Q lcl|Aclame:pro 184 VLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG------I-LFQ---- 242 (409) Q Consensus 184 ~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------~-~vl---- 242 (409) .+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| .|. . .++ T Consensus 236 kAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYlr~iM~k~KNklVYDa~TGev~ddrk~msMlEDyW 315 (533) T protein:vir:10 236 KAIKAVNQLRMIEDSLVIYRLSRAPERRIFYIDVGNLPKNKAEQYLREVMGRYRNKLVYDANTGEIKDDKKFMSMLEDFW 315 (533) T ss_pred HhHHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhccceEEEeccCceecccchhhhhHhhhc Confidence 666555444433333 22223 3332 2233223345555555544444444432 221 1 111 Q ss_pred ------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccH------HHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 243 ------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN------EELNRFYLQHTLLPIVK 310 (409) Q Consensus 243 ------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~------e~~~~~~~~~~l~P~~~ 310 (409) +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|......+.+.. |=....|+...=.-+.. T Consensus 316 LPRReGgrgTEItTLpGg-qnLgem~DV~YF~kKLY~aLnVP~SRl~~e~~f~~Gr~~EItRDEiKF~KFI~RLR~rFs~ 394 (533) T protein:vir:10 316 LPRREGGRGTEITTLPGG-QNLGELEDVKYFQKKLYKSLNVPGSRLETETTFNVGRAAEITRDEVKFQKFVARLRKRFSE 394 (533) T ss_pred ccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCccccCCCCcccccccchhhHHHHHHHHHHHHHHHHHHH Confidence 134556665542 22333344457788999999999999965443333222 22233344433333444 Q ss_pred HHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHH--HhcCCcCHHHHHH-HhCC--- Q lcl|Aclame:pro 311 QYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKA--VRSGYYTINDIRE-WEDL--- 371 (409) Q Consensus 311 ~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~--~~~g~~T~NE~R~-~~g~--- 371 (409) -+.+.|..+|+... +......|+|++. .- . .+-+..|++.+..+ +-+..++.+=+|+ .|.+ T Consensus 395 lF~~~Lk~qLiLKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~dyi~k~ILr~tDe 474 (533) T protein:vir:10 395 LFTDLLKTQLVLKGVISIEEWDQMKEHIQYDYIADNYFAELKEIEIRNERMNQVATMDPFVGKYFSVEYMRRQVLKQTDV 474 (533) T ss_pred HHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHhccCHH Confidence 55555556655321 1121233444433 21 1 11122333333322 1111223333332 1222 Q ss_pred ---------------CCCCCCCEEeecccccc---hhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 372 ---------------PPVEGGDKPLISGDLYP---IDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 372 ---------------~p~~~gd~~~~~~n~~~---~~~~~~~~~~~~gg~~n~~~~ 409 (409) +.+++-+.-.-|.+-.+ ++..+..+.+.++.+++.+-- T Consensus 475 ei~~~~kqI~~E~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (533) T protein:vir:10 475 EMKEIDKQIESEMESGIIADPAAEMDPAMAAGDPDAGGAPAEEVAPEGPDPSDERK 530 (533) T ss_pred HHHHHHHHHHHHHhCCCCCCCcchhhHHhcCCCCCcCCcccccCCCCCCCcchhhc Confidence 11111111111111100 000000000111111111111 No 230 >protein:vir:6596 Length: 521 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891727;genbank:gi:33620636;genbank:GeneID:1725288 Probab=88.73 E-value=0.031 Score=28.89 Aligned_cols=393 Identities=10% Similarity=0.083 Sum_probs=165.8 Q ss_pred Ccchhhhhhhhhh---------hhcccccCcccccccc--------cccCCC--Ccccc------------chhHHhhhH Q lcl|Aclame:pro 1 MAKENIVTRIKKK---------LIDNWIDQSASKLYDF--------SPWKNK--SFWGV------------INNTLETNE 49 (409) Q Consensus 1 M~~~~~~~r~~~~---------~~~~~~~~~~~~~~~~--------~~~~~~--~~~~v------------~~~~~~~~~ 49 (409) ..+++.|.+.... ..+-..+......... ..+.+. .+..+ ..+..+.+| T Consensus 5 l~~~~~~~~~d~~~~~e~~~~~~~s~~~p~~~dGa~~i~~~~~~~~~~~~g~~~~~~~~e~~~~~~~eLI~~YR~ma~~p 84 (521) T protein:vir:65 5 LKMLARWADFDNDKYEEQIKDKAESIAAPKNNDGATEVEINDNSPASSWNSLTQQFYSTDQKISTTKQLVNTYRGLMNNH 84 (521) T ss_pred hhhhhhccCchhhHHHhhhccCCCcccCCCCCCCceeecccCCccccccccceeeeccccchhhhHHHHHHHHHHHhhcc Confidence 1222334443221 1111111111111100 000111 11111 224578899 Q ss_pred HHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEee Q lcl|Aclame:pro 50 TIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIE 116 (409) Q Consensus 50 ~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~ 116 (409) .|..||+.|.+.+.- -|+.+--++-+. ..+..++|+ --+-...++ .+++.|.+.|..|.-++ T Consensus 85 Evd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~~----~~fR~WYVDgRi~fhki 159 (521) T protein:vir:65 85 EVENAVQNIVNDAIVFEEGHEVVSLNLEATGFSESVKERIHEEFKDLLN-TIQFDRRGQ----DMFRRWYVDSRIFFHKI 159 (521) T ss_pred chhhHHHHhhcceeEecCCCceEEEEecccccchHHHHHHHHHHHHHHH-Hhccchhhh----HHHhhhhhcceeEEEEE Confidence 999999988887642 344443222111 122333443 223333343 44667889999998877 Q ss_pred ecC--CCceeEEEeeCCcceEEEEcC-----C------cceeEEEEEc------------CCCeEEEEccceEEEecC-c Q lcl|Aclame:pro 117 RDI--YHQPSKLFLLNPDVVEMLIEN-----Q------SRELYYSIHA------------ATGNKLIVHNMDMLHFKH-I 170 (409) Q Consensus 117 ~~~--~G~~~~l~~l~p~~v~~~~~~-----~------~~~~~~~~~~------------~~g~~~~~~~~~vih~~~-~ 170 (409) -+. ...+.+|..|+|..++.++.- . +...+|.|.+ ..+..+.++.+-|.+... . T Consensus 160 id~~pk~GI~ELr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~g~~~~~~~~vkI~~dAI~y~hSGl 239 (521) T protein:vir:65 160 IGKNPKDGIVELRQLDPRNLEYVREIITEDTPEGKIYKATKEYFIYTVGNSSYCAGGQVFSPNSRVKIPRSAITYAHSGL 239 (521) T ss_pred EcCCccccceeeeeeCCcceeeeeeecccccCCcceecceeeeeeeecCCcceeccceeecCCcceeechhheeeeeccc Confidence 443 345899999999988876421 1 1122344432 112234455554444321 1 Q ss_pred CcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCc-- Q lcl|Aclame:pro 171 VASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGG-- 238 (409) Q Consensus 171 ~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-- 238 (409) -+.+...-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| .|. T Consensus 240 ~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNklvYDa~TGev~ 319 (521) T protein:vir:65 240 MDCDDKYIIGYLHRAVKPANQLKLLEDAMVVYRITRAPERRVFFIDTGNMNNRKAAQHMNSVAQSFKNRVVYDASTGKLK 319 (521) T ss_pred eeCCCCeeeecchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEeeccccccc Confidence 1223333456666666555544434333 22223 3332 2233223445555555544444444432 121 Q ss_pred -----eeec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCc-----cccH---HH Q lcl|Aclame:pro 239 -----ILFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTN-----FAKN---EE 295 (409) Q Consensus 239 -----~~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~-----~~~~---e~ 295 (409) ..++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-++..+.+. .+.+ |= T Consensus 320 ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~~~~gr~~EItRDEi 398 (521) T protein:vir:65 320 NQQANLSMTEDYWLQRRDGKAITDVTTLPGA-SGMSDIDDIRYFNRKLYEALRVPLSRSNLSDANMVIGGDGSEITRDEL 398 (521) T ss_pred ccccccchhhhhcccccCCCCccceeecccC-CCcChHHHHHHHHHHHHHHhCCCceeccCCCCcceeccccchhhHHHH Confidence 1222 134556665542 2222333445778899999999999985443321 1111 22 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhhc------cccceEEecch--hh----h-hhhHHHHHHHHHHHH--hcCCc Q lcl|Aclame:pro 296 LNRFYLQHTLLPIVKQYEEEFNRKLLTKTDR------EKNRYFKFNVK--SY----L-RADSATQAEVYFKAV--RSGYY 360 (409) Q Consensus 296 ~~~~~~~~~l~P~~~~ie~~ln~~ll~~~~~------~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~--~~g~~ 360 (409) ....|+...=.-+..-+.+.|..+|+...-. .....|+|++. .- . .+-+..|++.+..+- -+..+ T Consensus 399 KF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dpyvGky~ 478 (521) T protein:vir:65 399 EFSKFIRTLQSQFSEVLRDPLKYNLILKNVITEDDWDREINNIKVVFHRDSYYTEVKDAEILERRIGLIERITPYIGKYF 478 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhhhhhcccc Confidence 3334444433445555556666666543211 11223444433 21 1 112223333333221 11123 Q ss_pred CHHHHHH-HhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 361 TINDIRE-WEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 361 T~NE~R~-~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +.+=+|+ .|.+...+ .-++.+ .. +.....--..+.+.++ T Consensus 479 S~dyi~k~ILr~tDeei~~~~k~I--------~~--E~~~~~~~~p~~~~~~ 520 (521) T protein:vir:65 479 SNQTVMRDILKYTDDQMDTEKKQI--------EE--EANDPRFKQTPDEIED 520 (521) T ss_pred chHHHHHHHhccCHHHHHHHHHHH--------HH--hhhCCCCCCCcccccC Confidence 4444544 34443221 000000 00 0000000001111112 No 231 >protein:vir:95149 Length: 501 # NCBI annotation: hypothetical protein ORF007 # Family: family:all:584 # MgeID: mge:1552 # MgeName: PA73 # Cross-refs: genbank:acc:YP_001293414;genbank:gi:148912835;genbank:GeneID:5228224 Probab=87.77 E-value=0.037 Score=28.46 Aligned_cols=389 Identities=11% Similarity=0.067 Sum_probs=146.7 Q ss_pred Ccchhhhhhhhhhh------hcccccC-c----cccccc--ccc--cCCCCccccchhHHhhhH----HHHHHHHHHHHh Q lcl|Aclame:pro 1 MAKENIVTRIKKKL------IDNWIDQ-S----ASKLYD--FSP--WKNKSFWGVINNTLETNE----TIFSAITKLSNS 61 (409) Q Consensus 1 M~~~~~~~r~~~~~------~~~~~~~-~----~~~~~~--~~~--~~~~~~~~v~~~~~~~~~----~v~~~i~~ia~~ 61 (409) |.-...-++...+. ....... . ....+- +.. .+..+.. ..+.++..+ ++...++.+... T Consensus 1 m~~V~~~hp~y~~~~~~W~~ird~~~G~~~~r~~g~~YLP~~~~e~~~~e~~~--~Y~~rl~rA~~~n~~~~t~~~l~G~ 78 (501) T protein:vir:95 1 MPNVSFIRPELGKLLPLYYLIRDAIAGEPTVKGARTTYLPMPNAEDQSKENKA--RYEAYLKRAVFYNVARRTLFGLVGQ 78 (501) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCcCCCCCCCcccchH--HHHHHhhccccCchHHHHHHHHhhh Confidence 55211111111100 0011110 0 000110 100 1111100 112233333 333333333333 Q ss_pred hccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc--------------eeEEE Q lcl|Aclame:pro 62 MASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ--------------PSKLF 127 (409) Q Consensus 62 ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~--------------~~~l~ 127 (409) +-+-|..+ ..+..+..++.+-=-...+-.+|.+.++...+.+|.+++++.+...+. ..-+. T Consensus 79 vf~k~p~~-----~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~t~a~~~~~~~rPy~~ 153 (501) T protein:vir:95 79 VFMRDPVV-----KVPALLNPLVANATGSGINLTQLAKRAVSLNLAYSRAGLLVDYPTTEAEGGASIADLEAGRIRPTLY 153 (501) T ss_pred hhcCCcce-----eCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccccHHHHHhccCCcEEE Confidence 33333222 123344555544344556889999999999999999999997654321 01233 Q ss_pred eeCCcceEEE--------------------EcCCc---ce---eEEEEEcC-CCeE-EE-Ec------------------ Q lcl|Aclame:pro 128 LLNPDVVEML--------------------IENQS---RE---LYYSIHAA-TGNK-LI-VH------------------ 160 (409) Q Consensus 128 ~l~p~~v~~~--------------------~~~~~---~~---~~~~~~~~-~g~~-~~-~~------------------ 160 (409) .+.|..+--+ ...++ .. .+...... .|.. +. +. T Consensus 154 ~~~~~~IinW~~~~v~g~~~l~~v~l~E~~~~~d~~f~~~~~~q~RvL~~~~~g~~~~~v~r~~~~~~~~~~~~~~~~~~ 233 (501) T protein:vir:95 154 VYSPTEIINWRTTDRGAEEVLSLVVLFETWCAADDGFEMKTSGQFRVLRLDEEGYYVHEIWREPQPTKADGSKIPKGNYQ 233 (501) T ss_pred EecHhhhcCcceeccCCceeeeEEEEEEEEeecCCCcccceeEEEEEEeeCCCceEEEEEEEecCCcccCcceecCCccc Confidence 3333221100 00011 00 00011100 1100 00 00 Q ss_pred -------------cce---EEEecCcCcccccccccHHHHHHHH-HHHHHH-HH-HHHHHhcCCCceeEEecCCcCCHHH Q lcl|Aclame:pro 161 -------------NMD---MLHFKHIVASNMVQGISPIDVLKNT-TDFDNA-VR-TFNLTEMQKPDSFMLKYGSNVSTEK 221 (409) Q Consensus 161 -------------~~~---vih~~~~~~~~~~~G~sp~~~~~~~-i~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (409) .=. ++++ +....+...+.+|+..+.+. +...+. +. ...+.. ..-|..++.. ++++. T Consensus 234 ~~~~~~~~~~g~~~l~~IPfv~~-~~~~~~~~~~~pPLl~lA~lni~hy~~ssd~~~~l~~-~~~P~l~i~G---~~~~~ 308 (501) T protein:vir:95 234 QYVVYKPTDAQGKRLTEIPFMFI-GSENNDSNPDNPNFYDLASLNMAHYRNSADYEESCYI-VGQPTPVLIG---LTEEW 308 (501) T ss_pred ccceeeeeccCCCcCCeeeEEEE-ecCCCCCCCCccchHHHHHHHHHHHhhhhHHHHHHHH-cccceeeeeC---Ccccc Confidence 000 1111 11122334567787766533 333222 22 222333 3333333321 22221 Q ss_pred HHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccc-cHHHHHHHH Q lcl|Aclame:pro 222 RQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFA-KNEELNRFY 300 (409) Q Consensus 222 ~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~-~~e~~~~~~ 300 (409) .+...+ ....-+++..+.++.|.++.=+..++.-+. .+.++-..+++.. .| ..++... .++.+ ........- T Consensus 309 ~~~~~~--~~i~~G~~~~~~lP~~~~~~~ie~~~~~i~-~~~l~~l~~~m~~-~G--a~ll~~~-~~~~Ta~~~~~~~~~ 381 (501) T protein:vir:95 309 VTNVLK--GSVNFGSRGGIPLPVGADAKLLQASENTML-KEAMDTKERQMVA-LG--AKLVEQK-EVQRTATEAELEAAS 381 (501) T ss_pred cccCCC--CceeecccccccCCCCCceeEEecChhhHH-HHHHHHHHHHHHH-HH--HhhccCC-ccchhHHHHHHHHHH Confidence 111100 011113445566766554333333333332 2223333333332 24 2333221 11111 112223333 Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--hh--hccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCC Q lcl|Aclame:pro 301 LQHTLLPIVKQYEEEFNRKLLT--KT--DREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEG 376 (409) Q Consensus 301 ~~~~l~P~~~~ie~~ln~~ll~--~~--~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~ 376 (409) ....|.-++.+++++++..|-. .. ....+..|+.+.+=.........+.++.+++.+|.++....++.+-.-.+.. T Consensus 382 ~~S~L~~~a~~le~al~~~l~~~a~w~g~~~~~~~v~i~~df~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~~v~~ 461 (501) T protein:vir:95 382 EGSTLSSATKNVSAAFEWALKWAARWVGQADSGVKFELNTDFDIARMTPDERRSLVEEWQKGAITFEEMRTGLRKAGVAT 461 (501) T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccccccCCHHHHHHHHHHHhCCCCcHHHHHHHHHhCCCCC Confidence 4556777888888888864421 11 1123334555544222222334467777899999999999988764433321 Q ss_pred CC------EEe-ecccccchhcccccccccCCCCC-CCCC Q lcl|Aclame:pro 377 GD------KPL-ISGDLYPIDTPLELRKSLKGGDK-NVNE 408 (409) Q Consensus 377 gd------~~~-~~~n~~~~~~~~~~~~~~~gg~~-n~~~ 408 (409) .| .+- ..-+..+.+.+.......-||++ ..++ T Consensus 462 ~~~~~e~e~i~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 501 (501) T protein:vir:95 462 EDDSKAKEKIAKDTAEAMALATPANVPGDGSGGDNVGNSE 501 (501) T ss_pred hhHHHHHHHHHhhhcCcccccccCCCCCCCcccccccCCC Confidence 11 000 00011112222222112223333 3333 No 232 >protein:vir:106282 Length: 521 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:1474 # MgeName: Aeh1 # Cross-refs: genbank:acc:NP_944108;genbank:gi:38640152;genbank:GeneID:2658030 Probab=87.55 E-value=0.038 Score=28.37 Aligned_cols=390 Identities=13% Similarity=0.100 Sum_probs=172.5 Q ss_pred Ccc-----hhhhhhhhhhh-----hc---ccccCcccccc--------cccccCC--CCcc-------c----c-chhHH Q lcl|Aclame:pro 1 MAK-----ENIVTRIKKKL-----ID---NWIDQSASKLY--------DFSPWKN--KSFW-------G----V-INNTL 45 (409) Q Consensus 1 M~~-----~~~~~r~~~~~-----~~---~~~~~~~~~~~--------~~~~~~~--~~~~-------~----v-~~~~~ 45 (409) |.| ++.|.+..+.. .+ ..++.....+. ......+ .++. . + ..+.. T Consensus 1 m~~~~l~lf~f~~k~~e~~~~~~~~~~~~s~~~p~~~dGa~~I~~~~~~~~~~~~~~~~~~~~~~~~~n~~eLI~~YR~m 80 (521) T protein:vir:10 1 MNPIFLKLLQPWMKDDEKRVQSDLSDRIDSFAVPDTADGAIEVDKQIDTTAPKTAIVQSVLGYAPKIQNTKDLINQYRSL 80 (521) T ss_pred CCcchhHHhhhhhhhhhhHHhhhhccCccccccccCCCCceeeccCCCccccccchhhhhhccccccchHHHHHHHHHHH Confidence 544 34443322211 00 11111111111 0000000 0110 0 0 23567 Q ss_pred hhhHHHHHHHHHHHHhhcc-----CceeEeecccc--------ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeE Q lcl|Aclame:pro 46 ETNETIFSAITKLSNSMAS-----LPLKMYEDYKV--------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAY 112 (409) Q Consensus 46 ~~~~~v~~~i~~ia~~ia~-----lp~~~~~~~~~--------~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~ 112 (409) +.+|.|..||+.|.+.+.- -|+.+.-++-+ ...+..++|+ --+-...+ ..+++.|.+.|..| T Consensus 81 a~~pEvd~Av~eIvneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~----~~~fR~WYVDgRi~ 155 (521) T protein:vir:10 81 SKYHEVDNAIDEIINDAIVQEDNRDTVYLDLDKTDWNESVKEMVREEFRTILK-LLKFEREG----KRHFRRWYVDSRIY 155 (521) T ss_pred hhccchhhHHHhhhcceEEecCCCceEEEEecCcccchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhheeeeeEE Confidence 8899999999988887643 23333222111 1122333443 22333334 44466788999998 Q ss_pred EEeeec---CCCceeEEEeeCCcceEEEEc-----CC------cceeEEEEEc----------CCCeEEEEccceEEEec Q lcl|Aclame:pro 113 VLIERD---IYHQPSKLFLLNPDVVEMLIE-----NQ------SRELYYSIHA----------ATGNKLIVHNMDMLHFK 168 (409) Q Consensus 113 ~~~~~~---~~G~~~~l~~l~p~~v~~~~~-----~~------~~~~~~~~~~----------~~g~~~~~~~~~vih~~ 168 (409) .-++-+ ....+.+|..|+|..++.++. .. +...+|.|.+ ..+..+.++.+.|.|-. T Consensus 156 fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~k~~~~~~~v~~~~~e~f~Y~~~~~~~~~~~g~~~~~vkI~~daI~y~h 235 (521) T protein:vir:10 156 FHKMIDPARPKDGIKELRLLDPRNVEYYRVNLKSNENGNDVYKGVKEFFTYGATEDNRYNISGNSNNLVQIPIDAIVYSH 235 (521) T ss_pred EEEEeeCCCccccceeeeeeCCcceeeeeeecCCCCCcchhhccceeeeeeccCCCceecCCCCCCcceeechhheeeec Confidence 765433 233589999999999876531 11 1223344432 12233557776666554 Q ss_pred C-cCcccccccccHHHHHHHHHHHHHHHHHHH-HHhc-CCCc-ee-EEecCCcCCHHHHHHHHHHHHHHhcC-------C Q lcl|Aclame:pro 169 H-IVASNMVQGISPIDVLKNTTDFDNAVRTFN-LTEM-QKPD-SF-MLKYGSNVSTEKRQQVLEDFKQYYEE-------N 236 (409) Q Consensus 169 ~-~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~-~~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 236 (409) . .-..+..+.+|-+..+...+.-..-++... .... ..|- .. -+.++ .+.+..+++....+-+.+.| . T Consensus 236 SGL~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDvG-nlpk~KAeqYl~~iM~k~kNklVYDa~T 314 (521) T protein:vir:10 236 SGKVDIDGKTIVGYLHNVIKPANQLKMLEDAMVIYRITRAPERRVFYIDVG-TMPNKKATQHLNNVMQGLKNRVVYDSST 314 (521) T ss_pred ccceeCCCCceeccchhhhHhHHhhHHHHhhHHHHhhhccccceEEEEecC-CCCchhHHHHHHHHHHhcCceEEEeccC Confidence 2 122245667888887777665544444432 2233 3332 22 33333 45444444444444443332 2 Q ss_pred Cce-------eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc-Cccc---cH-- Q lcl|Aclame:pro 237 GGI-------LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN-TNFA---KN-- 293 (409) Q Consensus 237 ~~~-------~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~-~~~~---~~-- 293 (409) |.+ .++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|..... .+.+ .+ T Consensus 315 Gev~ddrk~msMlEDyWLpRReGgrgTEI~TLpgg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~f~~Gr~~EItR 393 (521) T protein:vir:10 315 GKVKNSSNNLAMTEDYWLMRRDGKATTEVSTLPGA-QSMGEMDDVRWFNRKLYESMKIPLSRLPQEGAGVTFGAGNDITR 393 (521) T ss_pred ceeccchhhhhhHhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCccccCCCCCceecccccchhH Confidence 221 111 134556665542 22333344457788999999999999865422 1111 11 Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHH----H Q lcl|Aclame:pro 294 -EELNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKA----V 355 (409) Q Consensus 294 -e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~----~ 355 (409) |=....|+...=.-+..-+.+.|..+|+... +......|+|++. .- . .+-+..|++.+..+ + T Consensus 394 DEikF~KFI~rLR~rFs~~f~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~eil~~R~~~l~~~dp~~y 473 (521) T protein:vir:10 394 DELQFTKYIRGLQQQFEPIFLNPLRTNLMLKGKMSVSEWEEQAENIKVVFSKDSYYEEIKDVEILERRVNLVQTLASAEV 473 (521) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHhhcCccc Confidence 2223334443333344555555666655421 1122233444433 21 1 12223344444433 2 Q ss_pred hcCCcCHHHHHHH-hCCCCCCCCCEEeecccccchhcccccccccCCC---CCCCCCC Q lcl|Aclame:pro 356 RSGYYTINDIREW-EDLPPVEGGDKPLISGDLYPIDTPLELRKSLKGG---DKNVNES 409 (409) Q Consensus 356 ~~g~~T~NE~R~~-~g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg---~~n~~~~ 409 (409) -+..++.+=+|+. |.+...+ ..+.+.+. +...+.| +++++.. T Consensus 474 vGky~s~dyi~k~ILr~tDee----------ik~~~k~I--~~E~~~~~~~~p~~e~~ 519 (521) T protein:vir:10 474 TGKYLSHEYVMKNILRMSDED----------IKTEREKI--DGELKDSVYKNPEDPME 519 (521) T ss_pred cccccchHHHHHHHhcCCHhH----------HHHHHHHH--HHhhhCCCCCCCcchhh Confidence 2224555556553 4443211 00111111 1111111 2222222 No 233 >protein:vir:102330 Length: 451 # NCBI annotation: putative portal protein # Family: family:all:125 # MgeID: mge:1566 # MgeName: phi CD119 # Cross-refs: genbank:acc:YP_529555;genbank:gi:90592641;genbank:GeneID:3974462 Probab=87.46 E-value=0.039 Score=28.33 Aligned_cols=372 Identities=12% Similarity=0.035 Sum_probs=150.4 Q ss_pred Ccchh---hhhhhhhh------hhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEee Q lcl|Aclame:pro 1 MAKEN---IVTRIKKK------LIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYE 71 (409) Q Consensus 1 M~~~~---~~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~ 71 (409) |-..- ++.+.... ..+-+.+......-.+............+..-..+....-+|+..+.-+-+-|+.... T Consensus 1 l~~~~i~~~i~~~~~~~~r~~~~~~YY~g~~~i~~~~~~~~~~~~~~~~~~~~ki~~n~~~~Ivd~~~~yl~G~p~~~~~ 80 (451) T protein:vir:10 1 MELEKIRAIISADAARRQEILQAKSYYYNKNDILKKGVVVQNRDENPLRNADNRISHNFHEILVDEKASYMFTYPVLFDI 80 (451) T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccchHHHHHHhhhhheecccceeec Confidence 21111 11111110 0111111110000000000000111111111222445556777777777677766532 Q ss_pred ccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC-------ceeEEEeeCCcceEEEEcCC--c Q lcl|Aclame:pro 72 DYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH-------QPSKLFLLNPDVVEMLIENQ--S 142 (409) Q Consensus 72 ~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G-------~~~~l~~l~p~~v~~~~~~~--~ 142 (409) .++....+...... . | ........+..+++.+|.||.++.++... ....+..++|..+-+..++. + T Consensus 81 ~~~~~~~~~~~~~~-~-n---~~~~~~~~~~~~~~~~G~a~~~~y~de~~~~~~~~~~~~~~~~i~p~~~~~vydd~~~~ 155 (451) T protein:vir:10 81 DNNKELNEKVTDVL-G-N---EFTRKAKNLAIEASNCGSAWLHYWIDEEYSGEQVTNQTFKYGVVNTEEIIPIYRNGIER 155 (451) T ss_pred CCcHHHHHHHHHHh-c-c---CHHHHHHHHHHHHhhcCeEEEEEeecCCcccccccccceeEEEEcccceEEEEcCCCCC Confidence 22211111221111 1 2 35667777888999999999988877642 13457778888887776543 2 Q ss_pred cee----EEEEEcC-CCe--------EEEEccceEEEecCcCc------------------------ccccccccHHHHH Q lcl|Aclame:pro 143 REL----YYSIHAA-TGN--------KLIVHNMDMLHFKHIVA------------------------SNMVQGISPIDVL 185 (409) Q Consensus 143 ~~~----~~~~~~~-~g~--------~~~~~~~~vih~~~~~~------------------------~~~~~G~sp~~~~ 185 (409) ... +|..... .|. ...+.++.+.+++.... .+...|.|-++.+ T Consensus 156 ~~~~~ir~~~~~~~~~~~~~~~~~~~~e~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vPvv~~~nn~~~~~d~e~v 235 (451) T protein:vir:10 156 ELEAVIRYYIQLEDVKGQIQKQAYTYVEFWTDKILDKYKFFGVSCCGSQIEHITVQHRFNSVPFVEFSNNIKKQSDLSKY 235 (451) T ss_pred ceEEEEEEEEeeecccccccceEEEEEEEEeCCeEEEEEecccCccccccccccccCCCCeeeEEEeccCCCCCCchhhH Confidence 221 1211111 111 11234444444431100 0112355656555 Q ss_pred HHHHHHHHHHH---HHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecC-------CCceeeeccCCh Q lcl|Aclame:pro 186 KNTTDFDNAVR---TFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQE-------PGVEIEPLPKKY 255 (409) Q Consensus 186 ~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~-------~g~~~~~l~~~~ 255 (409) ...++....+. ......+..+--.+.-.+....++....+ . ..+++.+. ++++|..-. . T Consensus 236 ~~liDa~~~~~S~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----~-----~~~~i~~~~~~~~~~~~~~~l~~~--~ 304 (451) T protein:vir:10 236 KKILDLYDRVMSGFANDLEDIQQIIYILENFGGEDTSEFLKEL----K-----RYKTIKTETDSEGDSGGLKTMQIE--I 304 (451) T ss_pred HHHHHHHHHHHHHHHHHHHHhccceeeeecCCcccchhhHHHH----h-----hCCeEEecCcCCccCCcceEEeec--C Confidence 55554333222 21233333332221111222222222221 1 11232222 345554433 3 Q ss_pred hhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH-------------HHHHHHHHHHHHHHHHHHHHHHhhcC Q lcl|Aclame:pro 256 VSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-------------NRFYLQHTLLPIVKQYEEEFNRKLLT 322 (409) Q Consensus 256 ~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-------------~~~~~~~~l~P~~~~ie~~ln~~ll~ 322 (409) ....+.+..+...+.|...-++|..-.... |+ ++..+. .+..+...+.-.++-+...+ . T Consensus 305 ~~~~~~~~~~~l~~~I~~~s~~p~~~~~~~--gn-~Sg~Alk~~~~~l~~k~~~k~~~f~~~l~~~~~li~~~~-----~ 376 (451) T protein:vir:10 305 PTEARKIILEILKKQIYESGQGLQQDTENF--GN-ASGVALKFFYRKLELKSGLLETEFRTSFDKLIKAILYFL-----G 376 (451) T ss_pred CHHHHHHHHHHHHHHHHHHhCccccccccc--cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----C Confidence 344456677788889999988885321111 11 111111 11122222222222222222 1 Q ss_pred hhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcccc-cccccCC Q lcl|Aclame:pro 323 KTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTPLE-LRKSLKG 401 (409) Q Consensus 323 ~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~~~-~~~~~~g 401 (409) .. ....+.+.+..-...+..+.++.+.++. |+++..-+.++++.-.-+ +.. ...+....+ ..++... T Consensus 377 ~~---d~~~i~i~f~~~~p~n~~e~~~~~~kl~--g~iS~et~~~~~p~v~d~--~~e-----~~~~~ee~~~~~~~~~~ 444 (451) T protein:vir:10 377 VT---DYKKIQQTYTRNMMSNDLEDADIATKSV--GIIPTKIILRHHPWVDDV--EEA-----EKLYLEEKKIQASKVSD 444 (451) T ss_pred CC---CccceeEEecCCCCCCHHHHHHHHHHHh--ccCchHHHHHhCCCCCCH--HHH-----HHHHHHHHHHHHHHHHh Confidence 11 1233455556667788999999999884 788888888777553211 100 000100000 0000000 Q ss_pred CCCCCCC Q lcl|Aclame:pro 402 GDKNVNE 408 (409) Q Consensus 402 g~~n~~~ 408 (409) .=++-.| T Consensus 445 ~~~~~~~ 451 (451) T protein:vir:10 445 DYNNFTE 451 (451) T ss_pred hcCCCCC Confidence 0011111 No 234 >protein:vir:5665 Length: 511 # NCBI annotation: portal vertex protein of head # Family: family:all:1036 # MgeID: mge:119 # MgeName: KVP40 # Cross-refs: genbank:acc:NP_899604;genbank:gi:34419591;genbank:GeneID:2546036 Probab=87.32 E-value=0.04 Score=28.28 Aligned_cols=387 Identities=11% Similarity=0.054 Sum_probs=173.6 Q ss_pred hhhhhhhhhhh-----hc---ccccCcccccc--------c--ccc-----cCCCCcc-----cc-chhHHhhhHHHHHH Q lcl|Aclame:pro 4 ENIVTRIKKKL-----ID---NWIDQSASKLY--------D--FSP-----WKNKSFW-----GV-INNTLETNETIFSA 54 (409) Q Consensus 4 ~~~~~r~~~~~-----~~---~~~~~~~~~~~--------~--~~~-----~~~~~~~-----~v-~~~~~~~~~~v~~~ 54 (409) +++|.+.-+.. .+ ..+++....+. . .++ ....++. -+ ..+..+.+|.|..| T Consensus 1 ~~~w~~~de~~~~~~~~~~~~S~~~p~~~DGa~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~eLI~~YR~ma~~pEvd~A 80 (511) T protein:vir:56 1 MKFWTKEEEQDIQKIEKNPVRSFSAPDNVDGAKEIHTNLLAPQLGHAIIPSDAQSEGTIPVKELIKSYRALAEYHEVDDA 80 (511) T ss_pred CCCccchhhhhhhhhccCCcccccCCCCCCCceEEecccccceecceeccccccccCccchHHHHHHHHHHhhccchhhH Confidence 44455532211 11 11222111111 0 000 0000000 00 23567889999999 Q ss_pred HHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC Q lcl|Aclame:pro 55 ITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH 121 (409) Q Consensus 55 i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G 121 (409) |+.|.+.+.- -|+.+--++-.. ..+..++|+ --+-...+ ..+++.|.+.|..|.-++-+..- T Consensus 81 v~eIvne~iv~d~~~~pV~l~ld~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~----~~~fR~WYVDgRi~fHkiid~k~ 155 (511) T protein:vir:56 81 IQEIVDEAIVYENDKEVVWLNLDNTDFSENIKAKINEEFDRVVS-LLQMRKHG----YKWFRKWYVDSRIYFHKILDKDN 155 (511) T ss_pred HHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhhhhcceEEEEEEecccc Confidence 9988887642 344443222111 122333443 22333334 44466788999998876655555 Q ss_pred ceeEEEeeCCcceEEEEcC-----------CcceeEEEEEcCC-------------CeEEEEccceEEEecCc---Cccc Q lcl|Aclame:pro 122 QPSKLFLLNPDVVEMLIEN-----------QSRELYYSIHAAT-------------GNKLIVHNMDMLHFKHI---VASN 174 (409) Q Consensus 122 ~~~~l~~l~p~~v~~~~~~-----------~~~~~~~~~~~~~-------------g~~~~~~~~~vih~~~~---~~~~ 174 (409) .+.+|..|+|..++.++.- .+...+|.|.+.+ ...+.++.+.|.|...- .+.+ T Consensus 156 GI~eLr~lDPr~i~~vr~i~~~~~~~~~v~~~~~ey~~Y~~~~~~~~~~~~~~~~~~~~vkI~~daI~y~hSGL~d~~~~ 235 (511) T protein:vir:56 156 NIIELRPLNPMKMELVREIQKETIDGVEVVKGTLEYYVYKQSDYKMPSWMSATNRAQTSFRIPKDAIVFAHSGLMRGCAD 235 (511) T ss_pred ceeehhhcCcccchhhhhhhcccccccccccceeeeeEecCCCcccCcccccccccccceeechhheeeecccceeccCC Confidence 6899999999988765321 1233455554321 13467888889665432 1234 Q ss_pred ccccccHHHHHHHHHHHHHHHHHHH-HHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC-------CCce----- Q lcl|Aclame:pro 175 MVQGISPIDVLKNTTDFDNAVRTFN-LTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE-------NGGI----- 239 (409) Q Consensus 175 ~~~G~sp~~~~~~~i~~~~~~~~~~-~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----- 239 (409) ..+.+|-+..+...+.-..-++... .... ..|- ..+..--+.+.+..+++....+-+.+.| .|.+ T Consensus 236 ~g~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnLPk~KAeqYl~~iM~k~kNklVYDa~TGev~ddrk 315 (511) T protein:vir:56 236 DPYIIGYLDRAIKPANQLKMLEDALVIYRLARAPERRVFYVDVGNLPTQKAQQYVNGIMQNVKNRVVYDTQTGQVKNTTN 315 (511) T ss_pred CCeeeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceEEEeccCceeccchh Confidence 4567888887777665554444432 2223 3332 2232222345444444444444443332 2221 Q ss_pred --eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc-C--c---cccH---HHHHH Q lcl|Aclame:pro 240 --LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN-T--N---FAKN---EELNR 298 (409) Q Consensus 240 --~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~-~--~---~~~~---e~~~~ 298 (409) .++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|...+. + + .+.+ |=... T Consensus 316 ~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kKLy~aLnVP~SRl~~e~q~~~f~~Gr~~EItRDEiKF~ 394 (511) T protein:vir:56 316 AMSMLEDYYLPRREGSKGTEVSTLPGG-QSLGDIEDVLYFNRKLYKAMRIPTSRAASEDQTGGINFGQGAEITRDELKFT 394 (511) T ss_pred hhhhHhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCcccccCCCCccccccccchhhhHHHHHHH Confidence 111 134556665542 22333344457788999999999999964321 1 1 1111 22233 Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecchhhhh-------hhHHHHHHHHHHHH--hcCCcCHH Q lcl|Aclame:pro 299 FYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVKSYLR-------ADSATQAEVYFKAV--RSGYYTIN 363 (409) Q Consensus 299 ~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~~l~~-------~d~~~~~~~~~~~~--~~g~~T~N 363 (409) .|+...=.-+..-+.+.|..+|+... +......|+|++..=-. +-+..|++.+..+- -+..++.+ T Consensus 395 KFI~RLR~rFs~lF~~~Lk~qLilKgiit~eeW~~i~~~I~~~f~~Dn~f~ElKe~Eil~~Rl~~l~~~dpyvGky~S~~ 474 (511) T protein:vir:56 395 KFVKRLQTKFETVITDPLKHQLIVNNIITEEEWDANHEKLYVVFNQDSYFEEAKELEILNSRMNAMRDIQDYAGKYYSHK 474 (511) T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhcchhccccchH Confidence 34443333344555555666655431 11222334444432111 11122222222110 11123444 Q ss_pred HHHHH-hCCCCCCCCCEEeecccccchhc-ccccccccCCCC-CCCCCC Q lcl|Aclame:pro 364 DIREW-EDLPPVEGGDKPLISGDLYPIDT-PLELRKSLKGGD-KNVNES 409 (409) Q Consensus 364 E~R~~-~g~~p~~~gd~~~~~~n~~~~~~-~~~~~~~~~gg~-~n~~~~ 409 (409) =+|+. |.+... .+.. ....+...+.+- ++.+++ T Consensus 475 yi~k~ILr~tDe-------------ei~~~~k~I~~E~k~~~~~~~e~~ 510 (511) T protein:vir:56 475 YIQKNILRLSDD-------------QITAMQSEIDEEETNPRFQQDDQG 510 (511) T ss_pred HHHHHHhccCHH-------------HHHHHHHHHHHhhcCCCCCCcccC Confidence 45442 333211 0110 001111111111 233334 No 235 >protein:vir:108049 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:2002 # MgeName: JS98 # Cross-refs: genbank:acc:YP_001595296;genbank:gi:161622602;genbank:GeneID:5783768 Probab=82.22 E-value=0.079 Score=26.63 Aligned_cols=394 Identities=11% Similarity=0.086 Sum_probs=165.4 Q ss_pred Ccc-------hhhhhhhhhh-----hh---cccccCcccccc----------cccccCCCCc---cc--------c-chh Q lcl|Aclame:pro 1 MAK-------ENIVTRIKKK-----LI---DNWIDQSASKLY----------DFSPWKNKSF---WG--------V-INN 43 (409) Q Consensus 1 M~~-------~~~~~r~~~~-----~~---~~~~~~~~~~~~----------~~~~~~~~~~---~~--------v-~~~ 43 (409) |+- ++.|.+-.+. .. ...++.....+. ..+.+...-| .+ + ..+ T Consensus 1 ~~~~~~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~~dGa~~I~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:10 1 MANFNTILSFLKPWANEDEKEYKQQINNNLESVTAPKLDDGAREIETQEQNIPYNALMQQMFGSNEPEVKNTRELIDTYR 80 (524) T ss_pred CCchhhHHHHhhhhhcchhhhhhhhhccCCCccccCCCCCCceeeccCcccccchhhhhhhhhcccchhhhHHHHHHHHH Confidence 433 3333321111 00 011111111111 0000000001 11 0 234 Q ss_pred HHhhhHHHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 44 TLETNETIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGN 110 (409) Q Consensus 44 ~~~~~~~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~ 110 (409) ..+.+|.|..||+.|.+.+.- -|+.+--++-.. ..+..++|+ --+-...+ ..+++.|.+.|. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~Ld~~~~s~siK~kI~eeF~~Il~-ll~F~~~~----~~~fR~WYVDgR 155 (524) T protein:vir:10 81 NLMNNYEVDNAVQEIVSDAIVYEDDKEVVALNLDGTDFSQSIKDKILAEFSEVLN-LLNFQRKG----TDHFQRWYVDSR 155 (524) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecccCcchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhheeece Confidence 578899999999988887642 344432222111 122333443 22333334 344667889999 Q ss_pred eEEEeeec---CCCceeEEEeeCCcceEEEE----cCCcc-------eeEEEEEc------------CCCeEEEEccceE Q lcl|Aclame:pro 111 AYVLIERD---IYHQPSKLFLLNPDVVEMLI----ENQSR-------ELYYSIHA------------ATGNKLIVHNMDM 164 (409) Q Consensus 111 a~~~~~~~---~~G~~~~l~~l~p~~v~~~~----~~~~~-------~~~~~~~~------------~~g~~~~~~~~~v 164 (409) .|.-++-+ ....+.+|..|+|..++.++ +.+++ ..+|.|.+ ..+..+.++.+.| T Consensus 156 i~fHkiid~~~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~~~~~~~~~~~~~~ikI~~dAI 235 (524) T protein:vir:10 156 IFFHKIINPKKMKDGVQELRRLDPRQVQYIREIVTRMEDGVKIVDGYREFFVYDTGHESYCADGRIYSAGTKVKIPRAAV 235 (524) T ss_pred EEEEEEeeCCCccccceeeeeeCCccceeeeeecccCcccchhhcchhhheeecCCCcccccCcceecCCcceecchhhe Confidence 98766433 23358999999999987642 12111 22333332 2345567888889 Q ss_pred EEecCc-CcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC----- Q lcl|Aclame:pro 165 LHFKHI-VASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE----- 235 (409) Q Consensus 165 ih~~~~-~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 235 (409) +|...- -+.++-.-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| T Consensus 236 vy~~SGL~d~~~~~i~syLhkAiKp~NQLkm~EDAlVIYRitRAPeRRvFYIDVGnlPk~KAeqYl~~im~k~kNKlvYD 315 (524) T protein:vir:10 236 VYAHSGLLDCCGKNIIGYLQRAIKPANQLKLMEDAMVIYRITRAPDRRVFYIDTGNMPSRKAAAQMQHIMNTMKNRVVYD 315 (524) T ss_pred eeeccCcccCCCCceeccchHhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEe Confidence 887532 2223334456666666555444333333 22223 3332 2232222345555455544444443332 Q ss_pred --CCc------e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccC--cccc-- Q lcl|Aclame:pro 236 --NGG------I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNT--NFAK-- 292 (409) Q Consensus 236 --~~~------~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~--~~~~-- 292 (409) .|. . .++ +.|.+++.|... +.+.-.+-..+..+.+.++++||.+-|...+.+ +.+. T Consensus 316 a~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~e~~~~f~~gr~~ 394 (524) T protein:vir:10 316 ASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTMPGA-TGMSDMDDVLYFRTALYRALRIPESRIPSESNSGVMFDAGT 394 (524) T ss_pred ccCCeeccchhhhhhHhhhcccccCCCCccceeecccc-CCcChHHHHHHHHHHHHHHhCCCchhccCCCCccccccccc Confidence 222 1 111 134556665542 223333444577889999999999999543321 1111 Q ss_pred -H---HHHHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHHH Q lcl|Aclame:pro 293 -N---EELNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKAV 355 (409) Q Consensus 293 -~---e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~ 355 (409) + |=....|+...=.-+..-+.+.|..+|+... +......|+|++. .- . .+-+..|+..+..+- T Consensus 395 EItRDEiKF~KFI~rLR~rFs~lf~~~L~~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~d 474 (524) T protein:vir:10 395 AITRDELKFAKWIRQLQNKFEEIFLDPLKTNLILKKIITEDEWEREINNIKVTFNRDSYFSEMKDAEIMERRINMLTMAE 474 (524) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhh Confidence 1 2223334443333444555556666655431 1121233444433 21 1 111223333333221 Q ss_pred h--cCCcCHHHHHH-HhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 356 R--SGYYTINDIRE-WEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 356 ~--~g~~T~NE~R~-~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) - +..++.+=+|+ .|.+...+ .-++.+--.--.++ -+..+.+++|= T Consensus 475 pyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~---------~~~~~~~~~~f 524 (524) T protein:vir:10 475 PFIGKYISHQTAMKDFLQMTDEEINQEAKQIEEESKEAR---------FQNPDEEEEDF 524 (524) T ss_pred hhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCC---------CCCCChhhhcC Confidence 1 11233443443 23332211 00000000000000 00000111111 No 236 >protein:vir:102239 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1648 # MgeName: PBI1 # Cross-refs: genbank:acc:YP_655205;genbank:gi:109522785;genbank:GeneID:4157478 Probab=77.96 E-value=0.12 Score=25.65 Aligned_cols=380 Identities=11% Similarity=0.048 Sum_probs=168.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc------ Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK------ 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~------ 74 (409) |+..+ | .+-....+...... + + ..|+...-.+..+..--.++-.+..+.+...+..++. T Consensus 1 ~~~~~---~--~~~~~~~~~~g~~~---~---p----~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~r~~ 65 (527) T protein:vir:10 1 MGQDK---R--QYGSTQQLRAGEAN---F---P----NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPI 65 (527) T ss_pred CCccc---c--ccCCCcCcCCcccc---C---c----ccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccccee Confidence 54421 1 00000111000000 0 0 0122111111111111111112222222211111110 Q ss_pred -------------------------cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC---CCceeEE Q lcl|Aclame:pro 75 -------------------------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI---YHQPSKL 126 (409) Q Consensus 75 -------------------------~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~---~G~~~~l 126 (409) .....+..+|+.--. -..+....+....+.++-|.+...+.++. .|.-+.+ T Consensus 66 ~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~-~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v 144 (527) T protein:vir:10 66 YVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIRVLFD-RENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) T ss_pred eehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHH-HhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceE Confidence 001122223332111 13344566667778889999988888774 3445777 Q ss_pred EeeCCcceEEEEcCCcce--eEEE----EEc---------------------CCCeEE-------E-------------- Q lcl|Aclame:pro 127 FLLNPDVVEMLIENQSRE--LYYS----IHA---------------------ATGNKL-------I-------------- 158 (409) Q Consensus 127 ~~l~p~~v~~~~~~~~~~--~~~~----~~~---------------------~~g~~~-------~-------------- 158 (409) ..++|..+.++.++++.. ..+. +.. ..|..+ . T Consensus 145 ~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e 224 (527) T protein:vir:10 145 HEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPE 224 (527) T ss_pred eecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccc Confidence 778877666665554321 1110 000 001000 0 Q ss_pred -----------------------EccceEEEecCcCcccccccccHHHHHHHHHHHHHH---HHHHHHHhcCCCceeEEe Q lcl|Aclame:pro 159 -----------------------VHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNA---VRTFNLTEMQKPDSFMLK 212 (409) Q Consensus 159 -----------------------~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~ 212 (409) +.-=-|+|+++..+.+...|.|-++-+...+...+. -......+.++|.. ++ T Consensus 225 ~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~-~~- 302 (527) T protein:vir:10 225 SPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY-AT- 302 (527) T ss_pred cccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCcee-ee- Confidence 001135688887777888899988865555443322 23333444333322 22 Q ss_pred cCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcccc Q lcl|Aclame:pro 213 YGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAK 292 (409) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~ 292 (409) .+.. ..+. +-+.....-+.|.++=++++.++.-++..+.-..+.....+..+.|+..-++|..-+|..+.++.-+ T Consensus 303 tg~~--~vd~---~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~S 377 (527) T protein:vir:10 303 DSAP--PRDS---RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMNKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) T ss_pred cccc--cccc---cCCcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcH Confidence 1111 1110 1111111123455666888999998888776666888889999999999999999998655443211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhcChh------hccccceEEecchhhhhhhHHHHHHHHH Q lcl|Aclame:pro 293 NEELNRFYLQHTLLPIVKQYEEE--------------FNRKLLTKT------DREKNRYFKFNVKSYLRADSATQAEVYF 352 (409) Q Consensus 293 ~e~~~~~~~~~~l~P~~~~ie~~--------------ln~~ll~~~------~~~~~~~~~~d~~~l~~~d~~~~~~~~~ 352 (409) . -+ ..-.+.|++.+.+.. +-..+++-. .......+...+...+..|.+...+... T Consensus 378 G-~A----LeL~L~PLlar~~rk~L~~~~Vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~ 452 (527) T protein:vir:10 378 G-IA----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNNEKRFAQLL 452 (527) T ss_pred H-HH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHH Confidence 1 11 111223333221111 100011100 0011123355566778999999999999 Q ss_pred HHHhcCCcCHHHHHHHh----CCCCCCCCC-------EEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 353 KAVRSGYYTINDIREWE----DLPPVEGGD-------KPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 353 ~~~~~g~~T~NE~R~~~----g~~p~~~gd-------~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++.+|+++.-=+-++| |.... ..+ ...+-...+.+..+-.-+-...||=.+++.- T Consensus 453 tL~~aGiiS~etAv~~L~~~~g~eD~-E~E~~~I~~era~~a~a~a~a~~~~~a~~~~~~g~~~~~~d 519 (527) T protein:vir:10 453 ELWEAGLIPAKKLTEELSKIMGFELT-EEDFRQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) T ss_pred HHHHcCchhHHHHHHHHHhccCCCch-HHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcc Confidence 99999999998887777 42221 111 1111111111000000010111221111111 No 237 >protein:vir:101494 Length: 527 # NCBI annotation: gp9 # Family: family:all:6920 # MgeID: mge:1627 # MgeName: PLot # Cross-refs: genbank:acc:YP_655388;genbank:gi:109522576;genbank:GeneID:4157566 Probab=76.99 E-value=0.13 Score=25.45 Aligned_cols=380 Identities=11% Similarity=0.047 Sum_probs=168.0 Q ss_pred CcchhhhhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCceeEeeccc------ Q lcl|Aclame:pro 1 MAKENIVTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLKMYEDYK------ 74 (409) Q Consensus 1 M~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~------ 74 (409) |+..+ | .+-....+...... + + ..|+...-.+..+..--.++-.+..+.+...+..++. T Consensus 1 ~~~~~---~--~~~~~~~~~~g~~~---~---p----~~v~~~d~~Rl~aY~l~~~~y~n~~~~~~~~lrg~~~~~~r~~ 65 (527) T protein:vir:10 1 MGQDK---R--QYGSTQQLRAGEAN---F---P----NAVTDFDKARLASYRLYEDMYLTNTSDYQVILRGGDEGDQRPI 65 (527) T ss_pred CCccc---c--ccCCCcCcCCcccc---C---c----ccCCHHHHHHHHHHHHHHHHhcCchhheeeecCCcccccccee Confidence 54421 1 00000111000000 0 0 0122111111111111111111222222211111110 Q ss_pred -------------------------cccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecC---CCceeEE Q lcl|Aclame:pro 75 -------------------------VVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDI---YHQPSKL 126 (409) Q Consensus 75 -------------------------~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~---~G~~~~l 126 (409) .....+..+|+.--. -..+....+....+.++-|.+...+.++. .|.-+.+ T Consensus 66 ~~ps~~~~~~~~~~~~~~g~~~~~~~~~e~v~~~lr~~~~-~e~l~~~~~~~~r~~~vlGDg~f~l~wD~~k~~~~R~~v 144 (527) T protein:vir:10 66 YVPNGEKLIEAKMRFLGQGLKWEFSKKDAKVDDAIKVLFD-RENWEQKFESLKRWTEIRGDYVLLLIGDDEKDEGSRLSL 144 (527) T ss_pred eehhhHHhhCCcceeeccCccccccchhHHHHHHHHHHHH-HhhhHHHHHHHHHhhhhhcceeEEEeeccCCCcCCCceE Confidence 001122233332111 13344566667778889999988888774 3445777 Q ss_pred EeeCCcceEEEEcCCcce--eEEE----EEc---------------------CCCeEE-------E-------------- Q lcl|Aclame:pro 127 FLLNPDVVEMLIENQSRE--LYYS----IHA---------------------ATGNKL-------I-------------- 158 (409) Q Consensus 127 ~~l~p~~v~~~~~~~~~~--~~~~----~~~---------------------~~g~~~-------~-------------- 158 (409) ..++|..+.++.++++.. ..+. +.. ..|..+ . T Consensus 145 ~~~DP~~~f~~ed~d~~~~v~~v~~~~~~~~P~d~~~~~~~ar~~~~~~~l~~~g~~~~~G~~~yt~~~w~lg~w~d~~e 224 (527) T protein:vir:10 145 HEVDPSTYFPYEDPRYPGQVLGVYLVDEYPHPDSEKKNEKCARVQKYMKTLDDDGKPVPGGAIKYTEELYEPGKWDDRPE 224 (527) T ss_pred eecCcceeeeeecCCCCCceeeEEEeeeccCCccccccceehhhhhhhhhcCcccccccCcceeeeeceeeccccccccc Confidence 778877666665554321 1110 000 001000 0 Q ss_pred -----------------------EccceEEEecCcCcccccccccHHHHHHHHHHHHHH---HHHHHHHhcCCCceeEEe Q lcl|Aclame:pro 159 -----------------------VHNMDMLHFKHIVASNMVQGISPIDVLKNTTDFDNA---VRTFNLTEMQKPDSFMLK 212 (409) Q Consensus 159 -----------------------~~~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~ 212 (409) +.-=-|+|+++..+.+...|.|-++-+...+...+. -......+.++|.. ++ T Consensus 225 ~p~~~~~~~~~~~~~~l~~lp~pi~fiPvV~~~t~p~~~~~WG~S~La~ll~l~deLn~~~Td~s~is~~sG~Pi~-~~- 302 (527) T protein:vir:10 225 SPLEPDDIKKLSTLTEEEPLPEQITTLPVFHFRGHPIMNAMFGRSGLAGLESLIASVNQTMTDEDLIMVFGGLGFY-AT- 302 (527) T ss_pred cccchhhhhhhcCceeeecccCCCCccceEeecCCCccccccChhhHhHHHHHHHHHhhhhhHHHHHHHHhCCcee-ee- Confidence 001135688887777888899988865555443322 23333444333322 22 Q ss_pred cCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCcccc Q lcl|Aclame:pro 213 YGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAK 292 (409) Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~ 292 (409) .+.. ..+. +-+.....-+.|.++=++++.++.-++..+.-..+.....+..+.|+..-++|..-+|..+.++.-+ T Consensus 303 tg~~--~vd~---~G~~~~~~VgPG~iweL~e~ak~~~v~~~~~la~~~~h~~~L~~~l~~vA~~PavA~G~vD~s~~~S 377 (527) T protein:vir:10 303 DSAP--PRDS---RGNMVPWTISPLGMVEHGQNNKIYRVNGVASLEPSQTHMTKAEEAMQQTKGIPDIAVGVVDAAVAES 377 (527) T ss_pred cccc--cccc---cCCcCccccCCceeEecCCCcceeeccchhhhHHHHHHHHHHHHHHHHhhcCCeeeeccccCCcCcH Confidence 1111 1110 1111111123455666888999998888776666888888999999999999999998655443211 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhcChh------hccccceEEecchhhhhhhHHHHHHHHH Q lcl|Aclame:pro 293 NEELNRFYLQHTLLPIVKQYEEE--------------FNRKLLTKT------DREKNRYFKFNVKSYLRADSATQAEVYF 352 (409) Q Consensus 293 ~e~~~~~~~~~~l~P~~~~ie~~--------------ln~~ll~~~------~~~~~~~~~~d~~~l~~~d~~~~~~~~~ 352 (409) . -+ ..-.+.|++.+.+.. +-..+++-. .......+...+...+..|.+...+... T Consensus 378 G-~A----LeL~L~PLlar~~rk~L~~~~vqrq~~~~~~~~~L~aye~v~~~d~~~~~~v~ivf~p~lP~D~~avie~v~ 452 (527) T protein:vir:10 378 G-IA----LDLKLSAILSSCAEQELELKSVLKQFFYNLVTQWLPAYEGVGIDDADKKLTVTITFRDPKPVNSEKRFNQLL 452 (527) T ss_pred H-HH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcccCCCccccceEEEecccCCCCHHHHHHHHH Confidence 1 11 111223333221111 100011110 0011123355566778999999999999 Q ss_pred HHHhcCCcCHHHHHHHh----CCCCCCCCC-------EEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 353 KAVRSGYYTINDIREWE----DLPPVEGGD-------KPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 353 ~~~~~g~~T~NE~R~~~----g~~p~~~gd-------~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +++.+|+++.-=+-++| |.+.. ..+ ...+-...+.+..+-.-+-...||=.+++.- T Consensus 453 tL~~aGi~S~~tAv~~L~~~~g~eD~-E~E~~~I~~era~~a~a~a~A~~~~~a~~~~~~g~~~~~~d 519 (527) T protein:vir:10 453 QLWEAGLIPAKKLTEELSKIMGFELT-EEDFKQATEDKKTQGIAQAEAADPFGAQMAAEQGIPDEEDD 519 (527) T ss_pred HHHHcCchhHHHHHHHHHhccCCCCh-HHHHHHHHHHHHHHhHHhhhhcCchhhhhccccCCCCCCcc Confidence 99999999998887777 42221 111 1111111111000000010111221111111 No 238 >protein:vir:6896 Length: 523 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:140 # MgeName: RB69 # Cross-refs: genbank:acc:NP_861872;genbank:gi:32453663;genbank:GeneID:1494298 Probab=73.67 E-value=0.17 Score=24.84 Aligned_cols=394 Identities=10% Similarity=0.083 Sum_probs=162.3 Q ss_pred Ccc-----hhhhhhhhhhh--------hcccccCcccccc---c---ccc-----------cCCCCccc------c-chh Q lcl|Aclame:pro 1 MAK-----ENIVTRIKKKL--------IDNWIDQSASKLY---D---FSP-----------WKNKSFWG------V-INN 43 (409) Q Consensus 1 M~~-----~~~~~r~~~~~--------~~~~~~~~~~~~~---~---~~~-----------~~~~~~~~------v-~~~ 43 (409) |.| ++.|-+-.+.. ....+++....++ . ..+ +.+..... + ..+ T Consensus 1 m~f~~~~lf~f~~~~de~~~~~~~~~~~~S~~~p~~dDGa~~i~~~~~~~~~~~~~~~q~~y~~~e~~~~~~~eLI~~YR 80 (523) T protein:vir:68 1 MKFNILSLFAPWAKMDERDYKDQEKENLESITSPKLDDGAKEYEVSENEAQQTYNAMFQRMFGSQEPGLKSTRELIDTYR 80 (523) T ss_pred CCCchhhhhhhhhhhhhhhhhhhhhccCCCccccCCCCcceeeeccccccccccchhhhhhhhccccccchHHHHHHHHH Confidence 666 33333321110 0111111111110 0 000 00010000 0 235 Q ss_pred HHhhhHHHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 44 TLETNETIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGN 110 (409) Q Consensus 44 ~~~~~~~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~ 110 (409) ..+.+|.|..||+.|.+.+.- -|+.+.-+.-+. ..+..++|+ --+-...+ ..+++.|.+.|. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~i~Ld~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~----~~~fR~WYVDgR 155 (523) T protein:vir:68 81 NLMTNYEVDNAVSEIVSDAIVYEDDTEVVSINLDNTKFSPNIKSMMLDEFNEVLN-HLSFQRKG----SDHFRRWYVDSR 155 (523) T ss_pred HHhhccchhhHHHHhhcceeeecCCCceEEEEecccccchHHHHHHHHHHHHHHH-Hhccchhh----hHHHHhheeeeE Confidence 678899999999988887642 233332222111 122333443 22333334 444667889999 Q ss_pred eEEEeeecC---CCceeEEEeeCCcceEEEE-----cCC------cceeEEEEEc------------CCCeEEEEccceE Q lcl|Aclame:pro 111 AYVLIERDI---YHQPSKLFLLNPDVVEMLI-----ENQ------SRELYYSIHA------------ATGNKLIVHNMDM 164 (409) Q Consensus 111 a~~~~~~~~---~G~~~~l~~l~p~~v~~~~-----~~~------~~~~~~~~~~------------~~g~~~~~~~~~v 164 (409) .|.-++-+. ...+.+|..|+|..++.++ ... +...+|.|.+ ..+..+.++.+-| T Consensus 156 i~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~g~~vi~~~~e~f~Y~~~~~~~~~~g~~~~~~~~ikI~~dAI 235 (523) T protein:vir:68 156 IFFHKIIDPKRPKEGIKELRRLDPRQVQYVREVITTTEAGVKIVKGYKEYFIYDTSHESYACDGRIYEAGTKIKIPKAAI 235 (523) T ss_pred EEEEEEeeCCCccccceeeeeeCCcceeEEEeecCCCCcchhhhhhhhhheeeccccccccccccccCCCcceecchhhe Confidence 987665432 2358999999999987642 111 1122344432 1234455666666 Q ss_pred EEecC-cCcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC----- Q lcl|Aclame:pro 165 LHFKH-IVASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE----- 235 (409) Q Consensus 165 ih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 235 (409) .|-.. .-+.++-.-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| T Consensus 236 ~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~kNKlvYD 315 (523) T protein:vir:68 236 VYAHSGLVDCCGKNIIGYLHRAIKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPSRKAAEHMQHVMNTMKNRIAYD 315 (523) T ss_pred eeeeccceeCCCCceeccchhhhHHHHhhHHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhhcceeEEe Confidence 55542 11222233456666666555444333333 22223 3332 2233223345555455444444333322 Q ss_pred --CCc------e-eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCccc-Cccc---c Q lcl|Aclame:pro 236 --NGG------I-LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSN-TNFA---K 292 (409) Q Consensus 236 --~~~------~-~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~-~~~~---~ 292 (409) .|. . .++ +.|.+++.|... ..+.-.+-..+..+.+.++++||.+-|...+. .+.+ . T Consensus 316 a~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~~~~~f~~Gr~~E 394 (523) T protein:vir:68 316 ATTGKIKNQQHIMSMTEDYWLQRRDGKAVTEVDTLPGA-DNTGNMEDVRWFRNALYMALRIPITRIPSDQGGIQFDAGTS 394 (523) T ss_pred ccCCeeccchhhhhhHhhhcccccCCCcccceeecccc-CCcChHHHHHHHHHHHHHHhCCcceeecCCCcceecccccc Confidence 222 1 111 134556665542 22223344457788999999999999954322 2211 1 Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHHHh Q lcl|Aclame:pro 293 ---NEELNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKAVR 356 (409) Q Consensus 293 ---~e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~~ 356 (409) .|=....|+...=.-+..-+.+.|..+|+... +......|+|++. .- . .+-+..|++.++.+-- T Consensus 395 ItRDEikF~KFI~rLR~rFs~lf~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~dp 474 (523) T protein:vir:68 395 ITRDELSFGKFIRELQHKFEEIFLDPLKTNLILKGIITEDEWNDEINNIKIKFHRDSYFSELKDAEILERRINMLQMAEP 474 (523) T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEeeeecchHHHHHHHHHHHHHHHHHHHhhh Confidence 12223334443333444555555666655421 1121233444433 21 1 1112233333332211 Q ss_pred --cCCcCHHHHHH-HhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 357 --SGYYTINDIRE-WEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 357 --~g~~T~NE~R~-~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) +..++.+=+|+ .|.+...+ .-++.+--.--.++- +..+..++|= T Consensus 475 yvGky~s~~yi~k~ILr~tDeei~~~~kqI~~E~k~~~~---------~~p~~e~~~f 523 (523) T protein:vir:68 475 FIGKYISHRTAMKDILQMSDEEIEQEAKQIEEESKEARF---------QDPDQEQEDF 523 (523) T ss_pred hhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCC---------CCCchhhhcC Confidence 11234443443 23332211 000000000000000 0000000000 No 239 >protein:vir:94956 Length: 452 # NCBI annotation: putative phage structural protein # Family: family:all:584 # MgeID: mge:1538 # MgeName: Xp15 # Cross-refs: genbank:acc:YP_239276;genbank:gi:66392058;genbank:GeneID:5076601 Probab=73.65 E-value=0.17 Score=24.83 Aligned_cols=376 Identities=11% Similarity=0.050 Sum_probs=152.3 Q ss_pred Ccchhh----------hhhhhhhhh-cccccCccc-ccccccccCCCCccccchhHHhhhHHHHHHHHHHHHhhccCcee Q lcl|Aclame:pro 1 MAKENI----------VTRIKKKLI-DNWIDQSAS-KLYDFSPWKNKSFWGVINNTLETNETIFSAITKLSNSMASLPLK 68 (409) Q Consensus 1 M~~~~~----------~~r~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~i~~ia~~ia~lp~~ 68 (409) |..... |..+..... ...++.... .+..+..-....|...-.++.+ .+++...++.++..+-+-|.. T Consensus 1 m~V~~~hp~y~a~~~~W~~~rd~~~G~~~~r~~g~~YLpk~~~E~~~~Y~~rl~rA~~-~n~~~~t~~~~~G~vf~k~p~ 79 (452) T protein:vir:94 1 MPIETKHPEYLAYENDWIDCRVASLGQREVKKKGVRFLPKLSGQTDDMYNAYKQRALF-YSITSKTLSALSGMVLDQPPV 79 (452) T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcChHHHHcCCcccCCCCCCCCHHHHHHHHhhccC-CchHHHHHHHHhchhhcCCce Confidence 553200 111111000 000000000 0111111111112111112111 245556666666666555554 Q ss_pred EeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEE-cCCcce--- Q lcl|Aclame:pro 69 MYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLI-ENQSRE--- 144 (409) Q Consensus 69 ~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~-~~~~~~--- 144 (409) + .....+.++..+ ....+-.+|.+.++...+.+|.+++++.++..|...-+..+.|..+--+. +..|+. T Consensus 80 ~-----~~p~~l~~~~~D--~~G~~L~~~~~~~~~~~l~~G~~~ilVD~p~~g~rPy~~~~~~~~Ii~W~~~~~g~l~~v 152 (452) T protein:vir:94 80 I-----THPDAMSKYFED--QSGIQFYEVFTRAVEETLLMGRVGVFIDRPLTGGDPYISVYTTENILNWEEDEDGRLLMV 152 (452) T ss_pred e-----cccHHHHHHHhc--ccCCCHHHHHHHHHHHHHhcCeEEEEEeeccCCCceEEEEechhhhcCccccccCCeeEE Confidence 3 122334443222 45678899999999999999999999988877753334444443222111 111111 Q ss_pred ---------------------eEEEEEcCCCeE--EEEc--c-------ce-----------EEEec--CcCcccccccc Q lcl|Aclame:pro 145 ---------------------LYYSIHAATGNK--LIVH--N-------MD-----------MLHFK--HIVASNMVQGI 179 (409) Q Consensus 145 ---------------------~~~~~~~~~g~~--~~~~--~-------~~-----------vih~~--~~~~~~~~~G~ 179 (409) .++......|.. +.+. . .+ .|-|- .....+...|. T Consensus 153 ~lre~~~~~d~~d~f~~~~~~~yRvL~l~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~IP~v~~~~~~~~~~~~~ 232 (452) T protein:vir:94 153 VLREFYTVRDTADRYVQNIRVRYRCLELVDGLLQITVHETQDGKVWELAKTSTIQNVGVTMDYIPFFCITPSGLSMTPAK 232 (452) T ss_pred EEEEEEEEecCCCcccceeEEEEEEEEEeCCeEEEEEEEccCCceeeeccceeecCCCcccceeEEEEEcCCCCCCCCCc Confidence 111111111110 0010 0 01 11111 11222445688 Q ss_pred cHHHHHHHH-HHHHHHH--HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCC-C--ceeeeccC Q lcl|Aclame:pro 180 SPIDVLKNT-TDFDNAV--RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEP-G--VEIEPLPK 253 (409) Q Consensus 180 sp~~~~~~~-i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~-g--~~~~~l~~ 253 (409) +|+..+.+. +...+.. ....+...+.+ ..++....... ...-+++.++.+++ | ..|.+.+- T Consensus 233 pPLl~LA~ln~~hy~~~sd~~~~l~~~~~P-~l~~~g~~~~~------------~i~iG~~~~~~lpe~~~~~~yie~~g 299 (452) T protein:vir:94 233 PPMIDIVDINYSHYRTSADLEHGRHFTGLP-TPWITGAESQS------------TMHIGSTKAWVIPEVAAKVGFLEFTG 299 (452) T ss_pred cchHHHHHHHHHHhcchhHHHHHHHHcccc-eeEeecCcCCC------------ceEecccccccCCCCCCcceEEccCc Confidence 887765543 3333322 22233333333 33333221111 12235666677774 5 45666665 Q ss_pred ChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH--HHHHHHHHHHHHHHHHHHHHHHHhhcC--hh-hccc Q lcl|Aclame:pro 254 KYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE--LNRFYLQHTLLPIVKQYEEEFNRKLLT--KT-DREK 328 (409) Q Consensus 254 ~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~--~~~~~~~~~l~P~~~~ie~~ln~~ll~--~~-~~~~ 328 (409) ++......+ .+...+++ ...|. .++-....+ ..+.+. ....-....|.-++.++++++++.|=. .. .... T Consensus 300 ~~i~~~~~~-l~~le~~m-~~~Ga--~ll~~~~~~-~~s~ea~~~~~~~~~s~L~~~a~~~e~al~~~l~~~a~w~g~~~ 374 (452) T protein:vir:94 300 QGLQSLEKA-LSEKQAQL-ASLSA--RLIDNSTRG-SEATETVKLRYMSETASLKSVTRAVEALLNKAYSCIMDMESMGG 374 (452) T ss_pred hhHHHHHHH-HHHHHHHH-HHHHH--HhhccCCCc-chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCC Confidence 544422222 22222222 22221 233221111 112222 222333567777888888888754311 10 1122 Q ss_pred cceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHh---CCCCCCCCCEEeecccccchhcccccccccCCCCCC Q lcl|Aclame:pro 329 NRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWE---DLPPVEGGDKPLISGDLYPIDTPLELRKSLKGGDKN 405 (409) Q Consensus 329 ~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~---g~~p~~~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n 405 (409) +..++.+.+=.........++++.+++.+|.++....++.+ |....+.-+... .++.+.......++..+ T Consensus 375 ~~~v~~n~dF~~~~~~~~~~~al~~~~~~G~is~~t~~~~L~~~gvl~~~~e~~~i-------~~E~~~~~~~~~~~~~~ 447 (452) T protein:vir:94 375 TLNIKLNSAFLDSKLTAAELKAWVEAYLSGGISKEIYIHALKVGKVLPPPGESMGV-------IPDPPAPEPSPSNTPPN 447 (452) T ss_pred ceEEEeccccccccCCHHHHHHHHHHHhcCCCcHHHHHHHHHhCCCCCCccCHHHH-------HHHhhccCcccCCCCCC Confidence 33455444433333223455666779999999999998887 443322111000 01111111111111111 Q ss_pred CCCC Q lcl|Aclame:pro 406 VNES 409 (409) Q Consensus 406 ~~~~ 409 (409) +.+- T Consensus 448 ~~~~ 451 (452) T protein:vir:94 448 PSSK 451 (452) T ss_pred CccC Confidence 1111 No 240 >protein:vir:97265 Length: 513 # NCBI annotation: hypothetical protein ORF013 # Family: family:all:584 # MgeID: mge:1657 # MgeName: M6 # Cross-refs: genbank:acc:YP_001294521;genbank:gi:149408242;genbank:GeneID:5237130 Probab=58.55 E-value=0.41 Score=22.70 Aligned_cols=381 Identities=12% Similarity=0.063 Sum_probs=142.2 Q ss_pred Ccch---hh-------------hhhhhhhhh-cccccCc-ccccccccccCCCCccccchhHHhhh----HHHHHHHHHH Q lcl|Aclame:pro 1 MAKE---NI-------------VTRIKKKLI-DNWIDQS-ASKLYDFSPWKNKSFWGVINNTLETN----ETIFSAITKL 58 (409) Q Consensus 1 M~~~---~~-------------~~r~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~----~~v~~~i~~i 58 (409) |.=- ++ |..+..... ...++.. ...+..+ ...+...+ +.+++. +++...++.+ T Consensus 1 m~~~~~~~v~~~h~~y~a~~~~W~~ird~~~G~~~~r~~g~~YLPk~---~~E~~~~Y--~~rl~rA~~~n~~~~tl~~l 75 (513) T protein:vir:97 1 MADKDPKSPATTSGAYDQMLPRWHVIETLLGGTEAMREAGETYLPRH---QEETDKGY--QERLASAVLLNMVEQTLDTL 75 (513) T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhhcccCCCCC---CCCCHHHH--HHHHhcccCCChHHHHHHHH Confidence 2211 11 111111100 0000000 0011111 11111111 222322 3444555555 Q ss_pred HHhhccCceeEeeccccccchhhh-hhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCce-------------- Q lcl|Aclame:pro 59 SNSMASLPLKMYEDYKVVNTEVSD-LLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP-------------- 123 (409) Q Consensus 59 a~~ia~lp~~~~~~~~~~~~~~~~-~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~-------------- 123 (409) +..+.+-|..+. ......+.. ++.+-=-...+-.+|.+.++...+.+|.+++++.+...+.+ T Consensus 76 ~G~vf~k~p~~~---~~~p~~~~~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~~~~~~~T~Ade~~~ 152 (513) T protein:vir:97 76 SGKPFSEPIKLN---EDVPKAIEETILPDVDLQGNNLDVFARQWFREGMAKALCHVLIDMPRPAPREDGQPRTLADDRRE 152 (513) T ss_pred hhhhhhcCcccC---cCchHHHHHHHhhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCCCccchhHHhHHHHHhh Confidence 554444444331 112223333 33333334568899999999999999999999976543211 Q ss_pred ---eEEEeeCCcceEE----------------------EEcCCcceeE---EEEEcCCCeEEEEc--------------- Q lcl|Aclame:pro 124 ---SKLFLLNPDVVEM----------------------LIENQSRELY---YSIHAATGNKLIVH--------------- 160 (409) Q Consensus 124 ---~~l~~l~p~~v~~----------------------~~~~~~~~~~---~~~~~~~g~~~~~~--------------- 160 (409) .-+..+.|..|-- ..|..+...+ +.+.. |....+. T Consensus 153 ~~rPy~~~~~~e~IinW~~~~v~G~~~L~~v~l~E~~~~~Dgf~~~~~~q~rvL~~--g~~~v~r~~~~~~~~~~e~~~~ 230 (513) T protein:vir:97 153 GLRPYWVMIKPECLLFARSEVINGVEVLQHVRIIEHYMEQDGFAEVCKRRIRVLEP--GLVQLWEPVKKSNAQKEEWALA 230 (513) T ss_pred ccCceEEEecHhhhcCcceeccCcceeeeeEEEEEEEeecCCCcceEEEEEEEEeC--ceEEEEEeecCCCccccceEEe Confidence 1123333322210 1111111111 11111 1111100 Q ss_pred --------cceEEEecCcCcccccccccHHHHHHHH-HHHHHHHHHH-HHHhcCCCceeEEecCCcCCHHHHHHHHHHHH Q lcl|Aclame:pro 161 --------NMDMLHFKHIVASNMVQGISPIDVLKNT-TDFDNAVRTF-NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFK 230 (409) Q Consensus 161 --------~~~vih~~~~~~~~~~~G~sp~~~~~~~-i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (409) .=-++.+- ....+...|.+|+..+.+. +...+....+ ..-.+..-|..++.. ++++.. + T Consensus 231 ~~g~~~l~~IP~v~~~-~~~~~~~~~~pPLl~LA~ln~~hy~~~Sd~~~il~~~~~P~l~~~G---~~~~~~-------~ 299 (513) T protein:vir:97 231 DEWATGLNYVPLVTFY-ADRQGFMMGKPPLLDLAHLNVAHWQSASDQRHILTVSRFPILACSG---ASGEDS-------D 299 (513) T ss_pred cCCCCcCCceeEEEEe-cCCCCCCCCccchHHHHHHHHHHHhhhhhHHHHHHhcccceeeeec---CCcCCC-------C Confidence 00111111 1123444577887755542 3333322222 222233333333321 111110 1 Q ss_pred HHhcCCCceeecCC-C--ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccH-HHHHHHHHHHHHH Q lcl|Aclame:pro 231 QYYEENGGILFQEP-G--VEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKN-EELNRFYLQHTLL 306 (409) Q Consensus 231 ~~~~~~~~~~vl~~-g--~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~-e~~~~~~~~~~l~ 306 (409) ...-+++.++.+++ + ..|.+.+-+..... .+..+...+++ ...|. .+|... +++.+.. ......=....|. T Consensus 300 ~i~iG~~~~~~lpe~~~~~~yie~~g~~i~~~-~~~l~~le~qm-~~~Ga--~ll~~~-~~~~Ta~a~~~~~~~~~S~L~ 374 (513) T protein:vir:97 300 PVVVGPNKVLYNPDPAGRFYYVEHTGQAIAAG-RTDLKDLEEQM-AGYGA--EFLKRK-TGGQTATARALDSAEATSDLS 374 (513) T ss_pred ceEeeccccccCCCCCCcceeeccCchhHHHH-HHHHHHHHHHH-HHHHH--HhhccC-CccccHHHHHHHHHHHHHHHH Confidence 12235566677764 4 55666665443332 22222323333 33332 233221 1222211 1222233344566 Q ss_pred HHHHHHHHHHHHhhcChhh----ccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhC---C-CCCCCCC Q lcl|Aclame:pro 307 PIVKQYEEEFNRKLLTKTD----REKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWED---L-PPVEGGD 378 (409) Q Consensus 307 P~~~~ie~~ln~~ll~~~~----~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g---~-~p~~~gd 378 (409) -++.+++++++..|-.-.. ......|+.+.+=....-....+.++.+++..|.++....++.+- . +|--.-| T Consensus 375 ~~a~~le~al~~~l~~~a~wlg~~~~~~~v~in~dF~~~~~~~~~~~al~~a~~~G~is~~t~~~~L~r~gvl~~d~d~~ 454 (513) T protein:vir:97 375 AMTGLFEDALAQALDITADWLRLGPNGGTVELVKDYDLEEMDAPGLQALQVAREKRDISRKTYLNGLRLRGVLPEDFDED 454 (513) T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeccccCcccCCHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCccCCHH Confidence 6788888888765432110 111233444332222221233456667788899888877766542 2 1110000 Q ss_pred --------EEe-----ecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 379 --------KPL-----ISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 379 --------~~~-----~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) .+- ...+..++...+. ...+|.+.+++++ T Consensus 455 ~~~e~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~~~~~~ 496 (513) T protein:vir:97 455 EDWEELMEEISEAMGRAGLDLDPAQKNPP--EGGEGEGEGEGEG 496 (513) T ss_pred HHHHHHHHhhhhccCCCCccccccCCCCC--CCCCCCCCCCCCC Confidence 000 0001112221110 0011111111111 No 241 >protein:vir:7208 Length: 524 # NCBI annotation: gp20 portal vertex protein of head # Family: family:all:1036 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049782;genbank:gi:9632594;genbank:GeneID:1258582 Probab=53.17 E-value=0.54 Score=22.07 Aligned_cols=394 Identities=12% Similarity=0.111 Sum_probs=161.4 Q ss_pred Ccc-----hhhhhhhhh---------hhhcccccCcccccccc---c-----ccCCC--C-ccc-----------c-chh Q lcl|Aclame:pro 1 MAK-----ENIVTRIKK---------KLIDNWIDQSASKLYDF---S-----PWKNK--S-FWG-----------V-INN 43 (409) Q Consensus 1 M~~-----~~~~~r~~~---------~~~~~~~~~~~~~~~~~---~-----~~~~~--~-~~~-----------v-~~~ 43 (409) |.| ++.|.+.-+ ...+...+......... . ++.+. + +.+ + ..+ T Consensus 1 m~~~~L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:72 1 MKFNVLSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYR 80 (524) T ss_pred CCCchhhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHH Confidence 766 233333111 11111111111100000 0 00000 0 000 0 235 Q ss_pred HHhhhHHHHHHHHHHHHhhcc-----CceeEeecccc--------ccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 44 TLETNETIFSAITKLSNSMAS-----LPLKMYEDYKV--------VNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGN 110 (409) Q Consensus 44 ~~~~~~~v~~~i~~ia~~ia~-----lp~~~~~~~~~--------~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~ 110 (409) ..+.+|.|..||+.|.+.+.- -|+.+--++-. ...+..++|+ --+-...+ ..+++.|.+.|. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~----~~~fR~WYVDgR 155 (524) T protein:vir:72 81 NLMNNYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFSDVLN-HLSFQRKG----SDHFRRWYVDSR 155 (524) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhheeeeE Confidence 678899999999988887642 33433222111 1122333443 22333334 444667889999 Q ss_pred eEEEeeecC---CCceeEEEeeCCcceEEEE----cCC-------cceeEEEEEc------------CCCeEEEEccceE Q lcl|Aclame:pro 111 AYVLIERDI---YHQPSKLFLLNPDVVEMLI----ENQ-------SRELYYSIHA------------ATGNKLIVHNMDM 164 (409) Q Consensus 111 a~~~~~~~~---~G~~~~l~~l~p~~v~~~~----~~~-------~~~~~~~~~~------------~~g~~~~~~~~~v 164 (409) .|.-++-+. ...+.+|..|+|..++.++ +.+ +...+|.|.+ ..+..+.++.+-| T Consensus 156 i~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI 235 (524) T protein:vir:72 156 IFFHKIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAV 235 (524) T ss_pred EEEEEEEeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhhe Confidence 987665432 3358999999999987642 111 1122344432 1234455666666 Q ss_pred EEecC-cCcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC----- Q lcl|Aclame:pro 165 LHFKH-IVASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE----- 235 (409) Q Consensus 165 ih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 235 (409) .|-.. .-+.++-.-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| T Consensus 236 ~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYD 315 (524) T protein:vir:72 236 VYAHSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYD 315 (524) T ss_pred eeeeccceeCCCCceeccchhhhHhHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEe Confidence 55442 11222223456666666555444333333 22223 3332 2333223345555555544444444432 Q ss_pred --CCce-------eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccC--cc---c Q lcl|Aclame:pro 236 --NGGI-------LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNT--NF---A 291 (409) Q Consensus 236 --~~~~-------~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~--~~---~ 291 (409) .|.+ .++ +.|.+++.|... ..+.-.+-..+..+.+.++++||.+-|.....+ +. + T Consensus 316 a~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~ 394 (524) T protein:vir:72 316 ASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGA-DNTGNMEDIRWFRQALYMALRVPLSRIPQDQQGGVMFDSGT 394 (524) T ss_pred CCCCeeccchhhhhhHhhhcccccCCCcccceeecccc-CCcChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccc Confidence 2221 111 134556665542 222233444577889999999999999433221 11 1 Q ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecc--hhh----h-hhhHHHHHHHHHHHH Q lcl|Aclame:pro 292 KN---EELNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNV--KSY----L-RADSATQAEVYFKAV 355 (409) Q Consensus 292 ~~---e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~--~~l----~-~~d~~~~~~~~~~~~ 355 (409) .+ |=....|+...=.-+..-+.+.|..+|+... +......|+|++ +.- . .+-+..|++.+..+- T Consensus 395 EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~d 474 (524) T protein:vir:72 395 SITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFAELKEAEILERRINMLTMAE 474 (524) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhh Confidence 11 2223334443333344455555666655421 112123344443 321 1 111223333333221 Q ss_pred h--cCCcCHHHHHH-HhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 356 R--SGYYTINDIRE-WEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 356 ~--~g~~T~NE~R~-~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) - +..++.+=+|+ .|.+...+ .-++.+--.--.++- +..+..++|= T Consensus 475 pyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~---------~~~~~~~~~f 524 (524) T protein:vir:72 475 PFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARF---------QDPDQEQEDF 524 (524) T ss_pred hhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCC---------CCCchhhhcC Confidence 1 11233333433 23332211 000000000000000 0000000000 No 242 >protein:vir:103458 Length: 524 # NCBI annotation: portal vertex of the head # Family: family:all:1036 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803110;genbank:gi:116326390;genbank:GeneID:4405487 Probab=48.35 E-value=0.67 Score=21.53 Aligned_cols=394 Identities=12% Similarity=0.112 Sum_probs=161.4 Q ss_pred Ccc-----hhhhhhhhh---------hhhcccccCcccccccc---c-----ccCCC--C-ccc-----------c-chh Q lcl|Aclame:pro 1 MAK-----ENIVTRIKK---------KLIDNWIDQSASKLYDF---S-----PWKNK--S-FWG-----------V-INN 43 (409) Q Consensus 1 M~~-----~~~~~r~~~---------~~~~~~~~~~~~~~~~~---~-----~~~~~--~-~~~-----------v-~~~ 43 (409) |.| ++.|.+.-+ ...+...+......... . ++.+. + +.+ + ..+ T Consensus 1 m~~~~L~~~~~w~~~de~~~~~~~~~~~~S~~~p~~~Dga~e~~~~~~~~a~~~~g~~~~~~g~~e~~~~~~~eLI~~YR 80 (524) T protein:vir:10 1 MKFNVLSLFAPWAKMDERNFKDQEKEDLVSITAPKLDDGAREFEVSSNEAASPYNAAFQTIFGSYEPGMKTTRELIDTYR 80 (524) T ss_pred CCCchhhHhhccccCcchhhhhhhccCCccccCccCCCCceeeeecccccccccceeeeehhcccccccchHHHHHHHHH Confidence 766 233333111 11111111111100000 0 00000 0 000 0 235 Q ss_pred HHhhhHHHHHHHHHHHHhhcc-----CceeEeeccccc--------cchhhhhhhccccCCCCHHHHHHHHHHHHHhcCC Q lcl|Aclame:pro 44 TLETNETIFSAITKLSNSMAS-----LPLKMYEDYKVV--------NTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGN 110 (409) Q Consensus 44 ~~~~~~~v~~~i~~ia~~ia~-----lp~~~~~~~~~~--------~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~ 110 (409) ..+.+|.|..||+.|.+.+.- -|+.+--++-.. ..+..++|+ --+-...+ ..+++.|.+.|. T Consensus 81 ~ma~~pEvd~Av~eIVneaiv~d~~~~pV~l~L~~~~~s~~iK~kI~eeF~~Il~-ll~F~~~~----~~~fR~WYVDgR 155 (524) T protein:vir:10 81 NLMNNYEVDNAVSEIVSDAIVYEDDTEVVALNLDKSKFSPKIKNMMLDEFNDVLN-HLSFQRKG----SDHFRRWYVDSR 155 (524) T ss_pred HHhhccchhhHHHHhhcceeEecCCCceEEEEecCcCcchHHHHHHHHHHHHHHH-Hhccchhh----hHHHhhheeeeE Confidence 678899999999988887642 334332221111 122333443 22333334 445667889999 Q ss_pred eEEEeeecC---CCceeEEEeeCCcceEEEE----cCC-------cceeEEEEEcC------------CCeEEEEccceE Q lcl|Aclame:pro 111 AYVLIERDI---YHQPSKLFLLNPDVVEMLI----ENQ-------SRELYYSIHAA------------TGNKLIVHNMDM 164 (409) Q Consensus 111 a~~~~~~~~---~G~~~~l~~l~p~~v~~~~----~~~-------~~~~~~~~~~~------------~g~~~~~~~~~v 164 (409) .|.-++-+. ...+.+|..|+|..++.++ +.+ +...+|.|.+. .+..+.++.+-| T Consensus 156 i~fhKiid~k~pk~GI~Elr~lDPr~i~~vr~i~~~~~~~~~vi~~~~e~f~Y~~~~~~y~~~g~~~~~~~~ikI~~dAI 235 (524) T protein:vir:10 156 IFFHKIIDPKRPKEGIKELRRLDPRQVQYVREIITETEAGTKIVKGYKEYFIYDTAHESYACDGRMYEAGTKIKIPKAAI 235 (524) T ss_pred EEEEEEeeCCCccccceeeeeeCCccceeeeeeccCCCccchhhcchhhheeeccCccccccCccccCCCcceecchhhe Confidence 987665432 2358999999999987642 111 11223444321 234455566665 Q ss_pred EEecC-cCcccccccccHHHHHHHHHHHHHHHHHH-HHHhc-CCCc-eeEEecCCcCCHHHHHHHHHHHHHHhcC----- Q lcl|Aclame:pro 165 LHFKH-IVASNMVQGISPIDVLKNTTDFDNAVRTF-NLTEM-QKPD-SFMLKYGSNVSTEKRQQVLEDFKQYYEE----- 235 (409) Q Consensus 165 ih~~~-~~~~~~~~G~sp~~~~~~~i~~~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 235 (409) .|-.. .-+.++-.-+|-+..+...+.-..-++.. ..... ..|- ..+..--+.+.+..+++....+-..+.| T Consensus 236 ~y~hSGL~d~~~~~i~gyLhkAiKp~NQLkmlEDAlVIYRitRAPeRRvFYIDvGnlPk~KAeqYl~~im~k~KNklvYD 315 (524) T protein:vir:10 236 VYAHSGLVDCCGKNIIGYLHRAVKPANQLKLLEDAVVIYRITRAPDRRVWYVDTGNMPARKAAEHMQHVMNTMKNRVVYD 315 (524) T ss_pred eeeeccceeCCCCceeccchhhhHHHHhhhHHHhhHHHHhhhccccceEEEEecCCCCchhHHHHHHHHHHhcCceeEEe Confidence 55442 11222223456666666555444333333 22223 3332 2333223345555555544444444432 Q ss_pred --CCce-------eec----------CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccC--cc---c Q lcl|Aclame:pro 236 --NGGI-------LFQ----------EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNT--NF---A 291 (409) Q Consensus 236 --~~~~-------~vl----------~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~--~~---~ 291 (409) .|.+ .++ +.|.+++.|... ..+.-.+-..+..+.+.++++||.+-|.....+ +. + T Consensus 316 a~TGev~ddrk~msMlEDyWLpRReGgrgTEItTLpGg-qnlgem~DV~YF~kkLy~aLnVP~sRl~~d~~~~f~~gr~~ 394 (524) T protein:vir:10 316 ASTGKIKNQQHNMSMTEDYWLQRRDGKAVTEVDTLPGA-DNTGNMEDVRWFRQALYMALRVPLSRIPQDQQGGVMFDSGT 394 (524) T ss_pred CCCCeeccchhhhhhHhhhcccccCCCcccceeecccc-CCcChHHHHHHHHHHHHHHhCCchhhcCCCCCccccccccc Confidence 2221 111 134556665542 222233444577889999999999999433221 11 1 Q ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcChh------hccccceEEecch--hh----h-hhhHHHHHHHHHHHH Q lcl|Aclame:pro 292 KN---EELNRFYLQHTLLPIVKQYEEEFNRKLLTKT------DREKNRYFKFNVK--SY----L-RADSATQAEVYFKAV 355 (409) Q Consensus 292 ~~---e~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~------~~~~~~~~~~d~~--~l----~-~~d~~~~~~~~~~~~ 355 (409) .+ |=....|+...=.-+..-+.+.|..+|+... +......|+|++. .- . .+-+..|++.+..+- T Consensus 395 EItRDEikF~KFI~rLR~rFs~~f~~~Lk~qLilKgiit~eew~~i~~~I~~~f~~Dn~f~ElKe~Eil~~R~~~l~~~d 474 (524) T protein:vir:10 395 SITRDELTFAKFIRELQHKFEEVFLDPLKTNLLLKGIITEDEWNDEINNIKIEFHRDSYFTELKEAEILERRINMLTMAE 474 (524) T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHhhcceEEeeecchHHHHHHHHHHHHHHHHHHHhh Confidence 11 2223334443333344455555666655421 1121233444433 21 1 111223333333221 Q ss_pred h--cCCcCHHHHHH-HhCCCCCC--CCCEEeecccccchhcccccccccCCCCCCCCCC Q lcl|Aclame:pro 356 R--SGYYTINDIRE-WEDLPPVE--GGDKPLISGDLYPIDTPLELRKSLKGGDKNVNES 409 (409) Q Consensus 356 ~--~g~~T~NE~R~-~~g~~p~~--~gd~~~~~~n~~~~~~~~~~~~~~~gg~~n~~~~ 409 (409) - +..++.+=+|+ .|.+...+ .-++.+--.--.++- +..+..++|= T Consensus 475 pyvGky~s~~yi~k~ILr~tDeei~~~~k~I~~E~k~~~~---------~~~~~~~~~f 524 (524) T protein:vir:10 475 PFIGKYISHRTAMKDILQMTDEEIEQEAKQIEEESKEARF---------QDPDQEQEDF 524 (524) T ss_pred hhhcccchhHHHHHHHhccCHHHHHHHHHHHHHHhhcCCC---------CCCchhhhcC Confidence 1 11233333433 23332211 000000000000000 0000000000 No 243 >protein:vir:80453 Length: 535 # NCBI annotation: BcepGomrgp05 # Family: family:all:584 # MgeID: mge:1882 # MgeName: BcepGomr # Cross-refs: genbank:acc:YP_001210225;genbank:gi:146329917;genbank:GeneID:5123562 Probab=43.39 E-value=0.85 Score=20.98 Aligned_cols=387 Identities=11% Similarity=0.022 Sum_probs=137.9 Q ss_pred Ccchhhhhhhhhh------hhcccccCc-----ccccccccccCCCCccc---cchhHHhhhH----HHHHHHHHHHHhh Q lcl|Aclame:pro 1 MAKENIVTRIKKK------LIDNWIDQS-----ASKLYDFSPWKNKSFWG---VINNTLETNE----TIFSAITKLSNSM 62 (409) Q Consensus 1 M~~~~~~~r~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~---v~~~~~~~~~----~v~~~i~~ia~~i 62 (409) |.=...-++...+ +........ ....+-+- +....... -..+.++..+ ++...++.++..+ T Consensus 32 m~dV~~~hp~y~a~~~~W~~ird~~~G~~~~r~~g~~YLP~-~~~~~~~~E~~~~Y~~rl~rA~~~n~~~~tl~~l~G~v 110 (535) T protein:vir:80 32 LPNVGYQRVEFGEMLPKWRKIMDCLSGQEAIKAKREEYLPM-PSVDSRDEEQRRRYETYLQRAIFYNVTARTLDGMMGQV 110 (535) T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhcChHHHHhcccccCCC-CCcccCCcCCHHHHHHHHhhccCCChhHHHHHHHhchh Confidence 4411000000000 000000000 00111000 00000000 0112233333 3334444333333 Q ss_pred ccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCce------------eEEEeeC Q lcl|Aclame:pro 63 ASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQP------------SKLFLLN 130 (409) Q Consensus 63 a~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~------------~~l~~l~ 130 (409) -+.|..+ .....+..++.+-=-...+-.+|.+.++...+.+|.+++++.+...|.. .-+..+. T Consensus 111 frk~p~~-----~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~iLVD~P~~~~~~t~ade~~~~~rPy~~~y~ 185 (535) T protein:vir:80 111 FSRDPIR-----QLPPALEAIVEDIDGEGVSLDQQAKKALGYTMGFGRAAIFTDYPNVGRPVTVLEQKLGLYRPTITLVH 185 (535) T ss_pred hcCCcce-----eccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeecCCCCcccHHHHHhcCCCcEEEEec Confidence 3333222 2234455555443444568899999999999999999999987655431 1122222 Q ss_pred CcceEE----------------------EEc-CCccee---EEEEEc-CCCeEE------------------EEccc--- Q lcl|Aclame:pro 131 PDVVEM----------------------LIE-NQSREL---YYSIHA-ATGNKL------------------IVHNM--- 162 (409) Q Consensus 131 p~~v~~----------------------~~~-~~~~~~---~~~~~~-~~g~~~------------------~~~~~--- 162 (409) |..|-- ..+ .++... +.+... .+|... .++.+ T Consensus 186 ae~IinW~~~~v~G~~~Lt~v~lrE~~~~~dd~f~~~~~~q~RvL~~~~~G~y~v~~~~~~~~~~~~~~~~~~~~~~~g~ 265 (535) T protein:vir:80 186 PTSIINWRTKLVGGKSVISLVVIQENVLAQDDGFETTYVQQWRVLQLNAEGNYQVERWRRETQEEMYYSYSKHVPTDGNG 265 (535) T ss_pred hhhccCccccccCCccceeEEEEEEEEEecCCCcccceeEEEEEEEecCCceEEEEEEEeecCCccccccceeecccCCC Confidence 211100 011 111111 111111 011000 00000 Q ss_pred ------eEEEecCcCcccccccccHHHHHHHH-HHHHHHH--HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHh Q lcl|Aclame:pro 163 ------DMLHFKHIVASNMVQGISPIDVLKNT-TDFDNAV--RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYY 233 (409) Q Consensus 163 ------~vih~~~~~~~~~~~G~sp~~~~~~~-i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (409) -++++- ....+...|.+|+..+.+. +...+.. .+..+...+.+ ..++.. ++++..+...+ -.... T Consensus 266 ~~l~~IPfv~~~-~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~il~~~~~P-~l~i~G---~~~~~~~~~~~-~~~i~ 339 (535) T protein:vir:80 266 NPFKEIPFQFIG-PLDNNADIDHPPLLDLCEVNIGHYRNSADYEEMAFVAGQP-TAFFTG---LTKDWVEDVFK-DFKVH 339 (535) T ss_pred cccCeeEEEEee-cCCCCCCCCccchHHHHHHHHHHhhchhHHHHHHHHhcCc-eeeeec---CchhhhhcCCC-CcceE Confidence 111221 1223445677887765543 3333322 22233333333 333321 11111110000 00012 Q ss_pred cCCCceeecCCCce--eeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHH-HHHHHHHHHHHHHH Q lcl|Aclame:pro 234 EENGGILFQEPGVE--IEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEEL-NRFYLQHTLLPIVK 310 (409) Q Consensus 234 ~~~~~~~vl~~g~~--~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~-~~~~~~~~l~P~~~ 310 (409) -++...+.++.+.+ |.+++.+....+.++ ...++++. +| ..++. ...++.+..+.. ...-....|.-++. T Consensus 340 iG~~~~~~lP~~~~~~~~e~~~~~~a~~~l~---~~e~qM~~-lG--a~ll~-~~~~~~Ta~~a~~~~~~~~S~L~~~a~ 412 (535) T protein:vir:80 340 LGSRAIIPLPQGATAGILQITPNSVPFEAMT---HKESQMIA-MG--ANLLV-KSGGNRTFGEAQQEEASEQSILSACTK 412 (535) T ss_pred ecCcccccCCCCCCcceeeeccchhHHHHHH---HHHHHHHH-HH--HHhhc-cCcccccHHHHHHHHHHHhHHHHHHHH Confidence 24555667776654 455444333333222 22233322 22 11121 111122111111 11222455666888 Q ss_pred HHHHHHHHhhcCh--hh----ccccceEEecchhhh-hhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCC-----CCCC Q lcl|Aclame:pro 311 QYEEEFNRKLLTK--TD----REKNRYFKFNVKSYL-RADSATQAEVYFKAVRSGYYTINDIREWEDLPPV-----EGGD 378 (409) Q Consensus 311 ~ie~~ln~~ll~~--~~----~~~~~~~~~d~~~l~-~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~-----~~gd 378 (409) +++++++..|-.- .. ......|..+.+=.. ..+.. .+.++.+++++|.++....++.+..-.+ ++-+ T Consensus 413 ~le~al~~aL~~~A~w~G~~~~~~~~~i~~n~dF~~~~ld~~-~~~all~~~~~G~Is~et~~~~L~r~gvl~~~~~~ee 491 (535) T protein:vir:80 413 NVSMAFRKALRWANQFQTGIVNDETVEYNLNTDFPAARLTPN-ERAELILEWQQGAITFKEMRAGLRRAGVASEDDAKAE 491 (535) T ss_pred HHHHHHHHHHHHHHHHcCCccCCCceEEEeccccccccCCHH-HHHHHHHHHhcCCCCHHHHHHHHHhCCCCCcccchHH Confidence 8888887544211 11 011233444433222 22333 4556667888999998888887643222 1111 Q ss_pred EE-ee-----ccccc---chhcc--ccccc----ccCCCCCCCC Q lcl|Aclame:pro 379 KP-LI-----SGDLY---PIDTP--LELRK----SLKGGDKNVN 407 (409) Q Consensus 379 ~~-~~-----~~n~~---~~~~~--~~~~~----~~~gg~~n~~ 407 (409) +. .+ ..+.. +.+.. .++.. +..|+++-++ T Consensus 492 e~~ri~~E~~~~~~~~g~~~d~~~~g~~~~~~~~~~~~~~~~~~ 535 (535) T protein:vir:80 492 TEGKATVEFIAKTAAAGKVGDAASGGTNKAKLNNGNGGGNQAGN 535 (535) T ss_pred HHHHHHhhhhhccccCCCCCCCCCCCCCcCcccCCccccccCCC Confidence 00 00 00000 00000 00000 0011111111 No 244 >protein:vir:78393 Length: 489 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1851 # MgeName: SETP3 # Cross-refs: genbank:acc:YP_001110831;genbank:gi:134288592;genbank:GeneID:5179656 Probab=37.32 E-value=1.1 Score=20.30 Aligned_cols=389 Identities=9% Similarity=0.049 Sum_probs=147.9 Q ss_pred Ccch-----hh-------------hhhhhhhhhcccccCcccccccccccCCCCccccchhHHhhh----HHHHHHHHHH Q lcl|Aclame:pro 1 MAKE-----NI-------------VTRIKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNTLETN----ETIFSAITKL 58 (409) Q Consensus 1 M~~~-----~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~v~~~i~~i 58 (409) |--. ++ |..+........ ...... .............-.+.++.. +++...++.+ T Consensus 1 ~~~~~~~~~~V~~~hp~y~a~~~~W~~ird~~~G~~--~~~~r~-~yl~~~~~~~~e~~Y~~rl~rA~~~n~~~~tl~~l 77 (489) T protein:vir:78 1 MLTENGQGSGVKTKHREWLHYAPKWQKVRHALAGEL--VSYLRN-VGLNEPDKAYGEARQAEYEAGGIVYNFTRRTLSGM 77 (489) T ss_pred CccCCCccCCCCccCHHHHHHHHHHHHHHHHhcCcc--cccccC-CCCCCCCCCCChHHHHHHHhccccCChHHHHHHHH Confidence 2111 00 111111111100 000000 000000000000002223322 3445555555 Q ss_pred HHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc-----------eeEEE Q lcl|Aclame:pro 59 SNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ-----------PSKLF 127 (409) Q Consensus 59 a~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~-----------~~~l~ 127 (409) +..+-+-|..+ ..+..+..++.+-=-...+-.+|.+.++...+.+|.+++++.....|. ..-+. T Consensus 78 ~G~vfrk~p~~-----~~p~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~~T~ade~~~~~rPy~~ 152 (489) T protein:vir:78 78 VGSVMRKEPEI-----NIPKELEYLLKNADGSGVGLIQHAQDTLMEIDSVGRGGLLVDAPETGAATAAEQNAGLLNPTIA 152 (489) T ss_pred hchhhcCCcce-----eccHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEeeCCCCCcCHHHHHHhcCCcEEE Confidence 55555444433 233445555554445567889999999999999999999998765542 11233 Q ss_pred eeCCcceEEEE----------------------cC---Ccce---eEEEEEcC-CCeE--EEE----------ccceEEE Q lcl|Aclame:pro 128 LLNPDVVEMLI----------------------EN---QSRE---LYYSIHAA-TGNK--LIV----------HNMDMLH 166 (409) Q Consensus 128 ~l~p~~v~~~~----------------------~~---~~~~---~~~~~~~~-~g~~--~~~----------~~~~vih 166 (409) .+.|..+--+. ++ .+.. .+...... .|.. +.+ ...+++| T Consensus 153 ~~~~~~IinW~~~~v~G~~~Lt~v~lrE~~~~~d~~~~f~~~~~~q~RvL~~~~~g~~~~~~~r~~~~g~~~~~~~~~~~ 232 (489) T protein:vir:78 153 FYTTENIVNWRLTRVGSVNRVTMVVLRETWEYNEPGNEFETKYGEQYRVLDIDSDGNYRQRLFRFDAEGGAQEDVVEIYP 232 (489) T ss_pred EechhhhcCceeeeeCCccceeEEEEEEeEEeecCCCCccceeEEEEEEEecCCCcceEEEEEEeecCCcccceeeEEec Confidence 33332221110 00 0100 01111110 1100 000 0001111 Q ss_pred -----------ec--CcCcccccccccHHHHHHHH-HHHHHHH-HHHHHHhcCCCceeEEecCCcCCHHHHHHHHHHHHH Q lcl|Aclame:pro 167 -----------FK--HIVASNMVQGISPIDVLKNT-TDFDNAV-RTFNLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQ 231 (409) Q Consensus 167 -----------~~--~~~~~~~~~G~sp~~~~~~~-i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (409) |- +....+...+.+|+..+.+. +...+.. .....-.+..-|..++......+++....... .. T Consensus 233 ~~g~~~l~~IPfv~~~~~~~~~~~~~pPLl~LA~lni~Hy~~ssd~~~~l~~~~~P~l~i~G~d~~~~~~~~~~~~--~~ 310 (489) T protein:vir:78 233 DLGESLRGVIPFTFIGATNNDATIDDAPLLPLAELNIGHYRNSADNEESSFVVGQPTLFIYPGENLTPQAFKEANP--NG 310 (489) T ss_pred cCCCCccCeeeEEEEecCCCCCCCCcCchHHHHHHHHHHhhhhhHHHHHHHHcccceeeeecCccCCcccccccCc--cc Confidence 11 01122334577887765543 3333322 22223333444444444333344433332221 11 Q ss_pred HhcCCCceeecCCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 232 YYEENGGILFQEPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQ 311 (409) Q Consensus 232 ~~~~~~~~~vl~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ 311 (409) ..-+++..+.++.+.++.-+..++..+. .+.++-...+.+ ..| ..++.- ...-.+.............|.-++.+ T Consensus 311 i~~g~~~~~~lp~~~~~~~ie~~~~~~~-r~~l~~le~qm~-~lG--a~l~~~-~~~~Ta~~~~~~~~~~~S~L~~~a~~ 385 (489) T protein:vir:78 311 IKFGSRRGHNLGYGGSAQLIQAGENNLA-RQNMLDKEQQAI-QIG--AQLITP-TQQITAQSARIQRGADTSVMATIARN 385 (489) T ss_pred eeeCCcccccCCCCCCcceeccCcchHH-HHHHHHHHHHHH-HHh--hhhccC-CcchhHHHHHHHHHHhhHHHHHHHHH Confidence 2224455566666654433433333332 111111111211 222 233321 11111122233444456777888999 Q ss_pred HHHHHHHhhcC--hhhc---cccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCC--EEeecc Q lcl|Aclame:pro 312 YEEEFNRKLLT--KTDR---EKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGD--KPLISG 384 (409) Q Consensus 312 ie~~ln~~ll~--~~~~---~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd--~~~~~~ 384 (409) ++++++..|-. .... +....|..+.+=....-......++..++++|.++....++.+-.-.+.+.+ +..-.. T Consensus 386 ~e~al~~~l~~~a~w~G~~~~~~~~i~~n~dF~~~~~d~~~~~al~~~~~~G~is~~t~~~~L~~~gv~d~~~e~~~~ei 465 (489) T protein:vir:78 386 VSQAYTDALRWVAVMLGKPEDTEVEFRLNMDFFLEPMTAQDRAAWMADINAGLLPATAYYAALRKAGVTDWTDADIKDAV 465 (489) T ss_pred HHHHHHHHHHHHHHHcCCCCCCceEEEeecccCcccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCCCCccHHHHHHHH Confidence 99888875321 1111 1122333333321211112245666778899999988888876443221100 000000 Q ss_pred cccc--hh--cccccccccCCCCCCCC Q lcl|Aclame:pro 385 DLYP--ID--TPLELRKSLKGGDKNVN 407 (409) Q Consensus 385 n~~~--~~--~~~~~~~~~~gg~~n~~ 407 (409) .-.| ++ ..++.. .+....++ T Consensus 466 ~~~~~~~~~~~~g~~~---~~~q~~~~ 489 (489) T protein:vir:78 466 ADQPLPVATEVQGEIP---QSAQQQEK 489 (489) T ss_pred hhcCCCcccCCcccCC---CCcccccC Confidence 0000 00 000000 00111111 No 245 >protein:vir:3361 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:67 # MgeName: T3 # Cross-refs: genbank:acc:NP_523332;genbank:gi:17570823;genbank:GeneID:927409 Probab=36.86 E-value=1.1 Score=20.25 Aligned_cols=345 Identities=12% Similarity=0.049 Sum_probs=117.1 Q ss_pred Ccch---------hhhhh--------hhhhhhcccccCcccccccccccCCCCccccchhH----HhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MAKE---------NIVTR--------IKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINNT----LETNETIFSAITKLS 59 (409) Q Consensus 1 M~~~---------~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~v~~~i~~ia 59 (409) |... ++|.. +.+++.....+. .+|.+-......... ......|..-.+.+. T Consensus 44 ~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~--------~~WF~l~~~d~~~~~~~~~~~~~~~v~~~l~~ve 115 (535) T protein:vir:33 44 FPKESDNESTDYTTPWQAVGARGLNNLASKLMLALFPM--------QSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVE 115 (535) T ss_pred cCCCCCcccccccccccccHHHHHHHHHHHHHHhhcCC--------CcccccccChHHHhccccCcchHHHHHHHHHHHH Confidence 1111 11111 111111111110 011111000000000 000011111111000 Q ss_pred HhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC-ceeEEEeeCCcceEEEE Q lcl|Aclame:pro 60 NSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH-QPSKLFLLNPDVVEMLI 138 (409) Q Consensus 60 ~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G-~~~~l~~l~p~~v~~~~ 138 (409) ..+...+ .+-| ++.-+..+..+++.+|++.+++..+..+ .+...+|| ..+.+.. T Consensus 116 ------------------~~~~~~~-~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl--~~~~v~~ 170 (535) T protein:vir:33 116 ------------------RIIMNYI-ESNS----YRVTLFECLKQLIVAGNALLYLPEPEGSYNPMKLYRL--SSYVVQR 170 (535) T ss_pred ------------------HHHHHHH-HhcC----cHHHHHHHHHHHHhhCceeEEeecCCCCceeeEEEEc--CeeEEee Confidence 1111112 2333 3444445567888899998887655422 23344444 3455555 Q ss_pred cCCcceeEEE-------------------------------------EE-cCCCeEEE-----------------Eccce Q lcl|Aclame:pro 139 ENQSRELYYS-------------------------------------IH-AATGNKLI-----------------VHNMD 163 (409) Q Consensus 139 ~~~~~~~~~~-------------------------------------~~-~~~g~~~~-----------------~~~~~ 163 (409) |..|.+.... +. ..++.... |...- T Consensus 171 d~~G~vd~i~r~~~~t~~ql~~~~~~~~~~~~~~k~~~~~~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 250 (535) T protein:vir:33 171 DAYGNVLQIVTRDQIAFGALPEDVRSAVEKSGGEKKMDEMVDVYTHVYLDEESGDYLKYEEVEDVEIDGSDATYPTDAMP 250 (535) T ss_pred CCCCCeeEEEeeEeecHHHHHHHhhhhhcccccccccccCCeEEEEEEeeCCCCcEEEEEEEeCccccccccccccccCC Confidence 5555332111 00 00111000 11112 Q ss_pred EEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCC--CceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceee Q lcl|Aclame:pro 164 MLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILF 241 (409) Q Consensus 164 vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 241 (409) .+..|+....+..||.||.+.+...+...+.+.+..+..... .|..++..++....... ..+..+.++ T Consensus 251 ~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~~----------~~~~~g~~v 320 (535) T protein:vir:33 251 YIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPRRL----------TKAQTGDFV 320 (535) T ss_pred ceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccccchhhc----------ccCCceeee Confidence 344455445567899999999998888777776665443322 22233333333332211 112222233 Q ss_pred c--CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH-HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 242 Q--EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE-LNRFYLQHTLLPIVKQYEEEFNR 318 (409) Q Consensus 242 l--~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~-~~~~~~~~~l~P~~~~ie~~ln~ 318 (409) . .+++...++...++-.-..+..+....+|-.+|-+.. +...+....+..|- .+..-....|.|....+.++|-. T Consensus 321 ~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~--~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~ 398 (535) T protein:vir:33 321 PGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNS--AVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQL 398 (535) T ss_pred cCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhh--cccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHH Confidence 2 3445555555544333344566677788989986552 21111111111221 22223333445555554444433 Q ss_pred h-------------hcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccc Q lcl|Aclame:pro 319 K-------------LLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) Q Consensus 319 ~-------------ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n 385 (409) - +|++-. .....+++ +..|... .+...+..+.+ + ...+ -.+.|. -.|. T Consensus 399 Pli~r~~~il~r~g~lP~~p-~~~v~~~y-is~La~a---qr~~~~~~l~~--~--~~~l---a~~~P~-~~d~------ 459 (535) T protein:vir:33 399 PLVRVLLKQLQATSQIPELP-KEAVEPTI-STGLEAI---GRGQDLDKLER--C--ISAW---AALAPM-QGDP------ 459 (535) T ss_pred HHHHHHHHHHHhcCCCCCCC-ccceeEEE-ecHHHHH---HHHHHHHHHHH--H--HHHH---HhhChh-hhhc------ Confidence 2 232211 01112222 1111111 01111111111 0 0000 011110 0000 Q ss_pred ccchhcccccccccCCCCC-CCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKGGDK-NVNES 409 (409) Q Consensus 386 ~~~~~~~~~~~~~~~gg~~-n~~~~ 409 (409) .+-.+.....-...-|=+. .-=.+ T Consensus 460 ~id~d~~~~~~a~~~Gvp~~~i~~~ 484 (535) T protein:vir:33 460 DINLAVIKLRIANAIGIDTSGILLT 484 (535) T ss_pred cCCHHHHHHHHHHHcCCCHhHhcCC Confidence 0000000000000000000 00011 No 246 >protein:vir:94709 Length: 522 # NCBI annotation: head to tail connector # Family: family:all:481 # MgeID: mge:1528 # MgeName: K1F # Cross-refs: genbank:acc:YP_338118;genbank:gi:77118196;genbank:GeneID:3707732 Probab=33.39 E-value=1.4 Score=19.85 Aligned_cols=349 Identities=10% Similarity=0.007 Sum_probs=123.2 Q ss_pred Ccchh---------hhhh--------hhhhhhcccccCcccccccccccCCCCc-cccchhHHhhhHHHHHHHHHHHHhh Q lcl|Aclame:pro 1 MAKEN---------IVTR--------IKKKLIDNWIDQSASKLYDFSPWKNKSF-WGVINNTLETNETIFSAITKLSNSM 62 (409) Q Consensus 1 M~~~~---------~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~v~~~i~~ia~~i 62 (409) |.+.+ +|.. +.+++.....+ +...+. +..... ..-..........|..-++.+. T Consensus 42 ~~~~~~~~~~~~~~~~dst~~~a~~~Las~l~~~ltP--~~~WFr---l~~~d~~~~~~~~~~~~~~~v~~~L~~ve--- 113 (522) T protein:vir:94 42 FPKESDNSSTEYTTPWQAVGARCLNNLAAKLMLALFP--QSPWMR---LTVSEYEAKTLSQDSEAAARVDEGLAMVE--- 113 (522) T ss_pred cCCCCCcccccccccccccHHHHHHHHHHHHHhhcCC--CCcccc---cccchhhhhccCcccchhHHHHHHHHHHH--- Confidence 21111 1111 11111111111 000010 000000 0000000000111111111111 Q ss_pred ccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCceeEEEeeCCcceEEEEcCCc Q lcl|Aclame:pro 63 ASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPSKLFLLNPDVVEMLIENQS 142 (409) Q Consensus 63 a~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~~l~~l~p~~v~~~~~~~~ 142 (409) ..+...+ .+-| ++.-+..+..+++.+|++.+++..+..|.+..+..++-..+.+..|.+| T Consensus 114 ---------------~~~~~~~-~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~~~~~~pl~~y~v~~d~~G 173 (522) T protein:vir:94 114 ---------------RVLMAYM-ETNS----FRVPLFEALKQLIVSGNCLLYIPEPEQGTYSPMRMYRLVSYVVQRDAFG 173 (522) T ss_pred ---------------HHHHHHH-HhcC----cHHHHHHHHHHHHhhCcEeEeeeccCCCceeeEEEEEcceEEEeeCCCc Confidence 0011111 1233 3444455567888999999998777766654443333344666666666 Q ss_pred ceeEEE--EEc--------------------------------C----------CCeEE-------EEccceEEEecCcC Q lcl|Aclame:pro 143 RELYYS--IHA--------------------------------A----------TGNKL-------IVHNMDMLHFKHIV 171 (409) Q Consensus 143 ~~~~~~--~~~--------------------------------~----------~g~~~-------~~~~~~vih~~~~~ 171 (409) .+...+ +.. . .|..+ .|...-.+.+|+.. T Consensus 174 ~vd~i~r~~~~~~~~l~~~~~~~~~~~~~~p~~~v~v~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~e~P~~~~Rw~~ 253 (522) T protein:vir:94 174 NILQIVTIDKVAFSALPEDVKSQLNADDYEPDTELEVYTHIYRQDDEYLRYEEVEGIEVTGTDGSYPLTACPYIPVRMVR 253 (522) T ss_pred CeEEEeeeeeccHHhcchHHHHHHhcccCCccceEEEEEEEEeeCCceeEEeeccCceecccCCCCccccCCceeeeeee Confidence 542111 110 0 01100 01111233344444 Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHHhcC--CCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeec--CCCce Q lcl|Aclame:pro 172 ASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQ--KPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQ--EPGVE 247 (409) Q Consensus 172 ~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl--~~g~~ 247 (409) ..+..||.||.+.+...+...+.+.+..+.... ..|..++..++...+... ..+..+.++- ++++. T Consensus 254 ~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~~v~~~g~~~~~~~----------~~~~~g~~v~g~~~~v~ 323 (522) T protein:vir:94 254 LDGEDYGRSYCEEYLGDLNSLETITEAITKMAKVASKVVGLVNPNGITQPRRL----------NKAATGEFVAGRVEDIN 323 (522) T ss_pred cCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecccccccchhe----------eccCCceeecCCcccce Confidence 556689999999999888888777766554432 223344444443333322 1112122332 23344 Q ss_pred eeeccCChhhHH-HHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH-HHHHHHHHHHHHHHHHHHHHHHHhh----- Q lcl|Aclame:pro 248 IEPLPKKYVSED-IVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE-LNRFYLQHTLLPIVKQYEEEFNRKL----- 320 (409) Q Consensus 248 ~~~l~~~~~d~~-~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~-~~~~~~~~~l~P~~~~ie~~ln~~l----- 320 (409) ..++... .+++ ..+..+....+|-.+|-+.....-..+..| ..|- ++..-....|.|....+.++|-.-| T Consensus 324 ~~~~~~~-~~~~~~~~~i~~~~~rI~~af~~~~~~~~~~~r~T--AtEV~~r~~E~~~~LG~v~~rl~~E~l~Pli~r~~ 400 (522) T protein:vir:94 324 FLQLTKG-QDFTIAKSVADAIEQRLGWAFLLNSAVQRNAERVT--AEEIRYVAGELEATLGGVYSVQSQELQLPIVRVLM 400 (522) T ss_pred eeecccc-cchhHHHHHHHHHHHHHHHHHhhhhhccCCCcccc--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH Confidence 4454433 2333 345566677789999976632211112222 2221 2223333455555555555544322 Q ss_pred --------cChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecccccchhcc Q lcl|Aclame:pro 321 --------LTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGDLYPIDTP 392 (409) Q Consensus 321 --------l~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n~~~~~~~ 392 (409) |++-- ...++.++...+.. ..+...+..+.+ ..+.+ -.+.|. .....+-.+.. T Consensus 401 ~il~r~g~lP~~p---~~~v~v~~~s~La~--~qr~~~~~~l~~----~~~~i---a~l~P~-------~~~~~id~d~~ 461 (522) T protein:vir:94 401 NQLQSAGMIPDLP---KEAVEPTVSTGLEA--LGRGQDLEKLTQ----AVNMM---TGLQPL-------SQDPDINLPTL 461 (522) T ss_pred HHHHhcCCCCCCC---cccEEeeEecHHHH--HHHHHHHHHHHH----HHHHH---Hhccch-------hhhhcCCHHHH Confidence 22211 11122222111110 011111111111 01111 111111 00000000110 Q ss_pred cccccccCCCC-CCCCCC Q lcl|Aclame:pro 393 LELRKSLKGGD-KNVNES 409 (409) Q Consensus 393 ~~~~~~~~gg~-~n~~~~ 409 (409) ...-...-|=+ .+-=.+ T Consensus 462 ~~~~a~~~Gv~~~~ivr~ 479 (522) T protein:vir:94 462 KLRLLNALGIDTAGLLLT 479 (522) T ss_pred HHHHHHHcCCChhhccCC Confidence 00000000000 000000 No 247 >protein:vir:1538 Length: 535 # NCBI annotation: head-to-tail joining protein # Family: family:all:481 # MgeID: mge:31 # MgeName: phiYeO3-12 # Cross-refs: genbank:acc:NP_052106;swissprot:trembl:q9t110;genbank:gi:9634032;uniprot:Q9T110;genbank:GeneID:1262384 Probab=24.77 E-value=2.1 Score=18.78 Aligned_cols=345 Identities=12% Similarity=0.041 Sum_probs=115.6 Q ss_pred Ccch---------hhhhh--------hhhhhhcccccCcccccccccccCCCCccccchh----HHhhhHHHHHHHHHHH Q lcl|Aclame:pro 1 MAKE---------NIVTR--------IKKKLIDNWIDQSASKLYDFSPWKNKSFWGVINN----TLETNETIFSAITKLS 59 (409) Q Consensus 1 M~~~---------~~~~r--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~v~~~i~~ia 59 (409) |... ++|.. +.+++.....+. .+|.+-........ .....+.|..-.+.+. T Consensus 44 ~~~~~~~~~~~~~~~~dst~~~a~~~Laa~l~~~ltP~--------~~WF~l~~~d~~~~~~~~~~~~~~~v~~~L~~ve 115 (535) T protein:vir:15 44 FPKESDNESTDYTTPWQAVGARGLNNLASKLMLALFPM--------QSWMKLTISEYEAKQLVGDPDGLAKVDEGLSMVE 115 (535) T ss_pred cCCCCCcccccccccccccHHHHHHHHHHHHHHhhcCC--------CcccccccChHHHhccCCCcchHHHHHHHHHHHH Confidence 1111 11111 111111111110 01111100000000 0000111111111000 Q ss_pred HhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCC-ceeEEEeeCCcceEEEE Q lcl|Aclame:pro 60 NSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYH-QPSKLFLLNPDVVEMLI 138 (409) Q Consensus 60 ~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G-~~~~l~~l~p~~v~~~~ 138 (409) ..+...+ .+-| ++.-+..+..+++.+|++.+++..+..+ .+...+||. .+.+.. T Consensus 116 ------------------~~~~~~l-~~sn----f~~~~~~~~~~L~~~G~a~l~~~~~~~~~~~f~~~pl~--~~~v~~ 170 (535) T protein:vir:15 116 ------------------RIIMNYI-ESNS----YRVTLFECLKQLIVAGNALLYLPEPEGSYNPMKLYRLS--SYVVQR 170 (535) T ss_pred ------------------HHHHHHH-HhcC----cHHHHHHHHHHHHhhCceeEEeecCCCCceeeEEEEcC--eeEEee Confidence 1111112 2233 3444455566888899998777654322 234444443 344444 Q ss_pred cCCcceeEEE------------------------------------------------EEcCCCeEE-------EEccce Q lcl|Aclame:pro 139 ENQSRELYYS------------------------------------------------IHAATGNKL-------IVHNMD 163 (409) Q Consensus 139 ~~~~~~~~~~------------------------------------------------~~~~~g~~~-------~~~~~~ 163 (409) |..|.+...+ ++...|... .|...- T Consensus 171 d~~G~vd~i~r~~~~t~~~l~~~~~~~~~~~~~~~~~~~~v~v~~~v~~~~~~~~~~~~~e~~g~~~~~~~~~~~~~~~P 250 (535) T protein:vir:15 171 DAYGNVLQIVTRDQIAFGALPEDVRSAVEKAGGEKKMDEMVDVYTHVYLDEESGDYLKYEEVEDVEIDGSDATYPTDAMP 250 (535) T ss_pred CCCCCeeEEEEeEeecHHHHHHHHhHhhhccccccCCCCceeEEEEEEEecCCCcEEEEEEeeCccccccccccccccCC Confidence 4444321110 000001111 011122 Q ss_pred EEEecCcCcccccccccHHHHHHHHHHHHHHHHHHHHHhcCC--CceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceee Q lcl|Aclame:pro 164 MLHFKHIVASNMVQGISPIDVLKNTTDFDNAVRTFNLTEMQK--PDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILF 241 (409) Q Consensus 164 vih~~~~~~~~~~~G~sp~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 241 (409) .+..|+....+..||.||.+.+...+...+.+.+..+..... .|..++..++...+... ..+..+.++ T Consensus 251 ~i~~Rw~~~~ge~YGrgp~~~~l~D~k~L~~l~~~~l~~~~~~~~p~~lv~~~g~~~~~~l----------~~~~~g~~v 320 (535) T protein:vir:15 251 YIPVRMVRIDGESYGRSYCEEYLGDLRSLENLQEAIVKMSMISAKVIGLVNPAGITQPRRL----------TKAQTGDFV 320 (535) T ss_pred ceeeeeeecCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeecccccccchhc----------ccCCceeee Confidence 344455445567899999999998888777776665443322 22333333333332221 112222232 Q ss_pred c--CCCceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHH-HHHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 242 Q--EPGVEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEE-LNRFYLQHTLLPIVKQYEEEFNR 318 (409) Q Consensus 242 l--~~g~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~-~~~~~~~~~l~P~~~~ie~~ln~ 318 (409) . .+++...++...++-.-..+..+....+|-.+|-+.. +...+....+..|- .+..-....|.|....+.++|-. T Consensus 321 ~g~~~~v~~~~~~~~~~~~~~~~~i~~~~~~I~~af~~~~--~~~~~~~r~TAtEV~~r~~E~~~~LG~v~~rl~~Ell~ 398 (535) T protein:vir:15 321 PGRREDIDFLQLEKQADFTVAKAVSDQIEARLSYAFMLNS--AVQRTGERVTAEEIRYVASELEDTLGGVYSILSQELQL 398 (535) T ss_pred cCCcccceeeecccccchhHHHHHHHHHHHHHHHHHhhhh--cccCCCccccHHHHHHHHHHHHHHHhHHHHHHHHHHHH Confidence 2 3445555555544333344566667888989986552 21111111111221 22223333445555554444433 Q ss_pred h-------------hcChhhccccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeeccc Q lcl|Aclame:pro 319 K-------------LLTKTDREKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISGD 385 (409) Q Consensus 319 ~-------------ll~~~~~~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~n 385 (409) - +|++-. .....+++ +..|... .+...+..+.+ + ...+ -.+.|. -.|. T Consensus 399 Pli~r~~~il~r~g~lP~~p-~~~v~~~y-is~La~a---qr~~~~~~l~~--~--~~~l---a~~~P~-~ld~------ 459 (535) T protein:vir:15 399 PLVRVLLKQLQATSQIPELP-KEAVEPTI-STGLEAI---GRGQDLDKLER--C--ISAW---AALAPM-QGDP------ 459 (535) T ss_pred HHHHHHHHHHHhcCCCCCCC-ccceeEEE-ecHHHHH---HHHHHHHHHHH--H--HHHH---HhcChh-hhhc------ Confidence 2 222211 01112222 1111111 01111111111 0 0000 011110 0000 Q ss_pred ccchhcccccccccCCCCC-CCCCC Q lcl|Aclame:pro 386 LYPIDTPLELRKSLKGGDK-NVNES 409 (409) Q Consensus 386 ~~~~~~~~~~~~~~~gg~~-n~~~~ 409 (409) .+-.+.....-...-|=+. .-=.+ T Consensus 460 ~id~d~~~~~~a~~~Gvp~~~i~~~ 484 (535) T protein:vir:15 460 DINLAVIKLRIANAIGIDTSGILLT 484 (535) T ss_pred cCCHHHHHHHHHHHcCCChhhhcCC Confidence 0000100000000000000 00011 No 248 >protein:vir:80165 Length: 651 # NCBI annotation: portal protein # Family: family:all:1548 # MgeID: mge:1878 # MgeName: Pf-WMP3 # Cross-refs: genbank:acc:YP_001285799;genbank:gi:148747833;genbank:GeneID:5220441 Probab=22.90 E-value=2.4 Score=18.52 Aligned_cols=384 Identities=11% Similarity=0.034 Sum_probs=120.4 Q ss_pred Ccchhh-------------hhhhhhhhhcccccCccccccccccc---------------CCCCccccc-hh-------H Q lcl|Aclame:pro 1 MAKENI-------------VTRIKKKLIDNWIDQSASKLYDFSPW---------------KNKSFWGVI-NN-------T 44 (409) Q Consensus 1 M~~~~~-------------~~r~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~v~-~~-------~ 44 (409) +....+ +.+. +.+....++..-...|..- -..++..+. .. . T Consensus 122 ~~~~~~~~~~l~~~~~~~~~~~~---~~d~l~~G~~i~kv~we~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 198 (651) T protein:vir:80 122 RLIKRYVQDKLTEGKFRAAYANF---LRQLLITGNSVLALPWRVETAEVKKKVQVRTPLFEDEPTFEVVSEEREVKSSPD 198 (651) T ss_pred HHHHHHHHHHhhccCcHHHHHHH---HHhhcccCceEEEEeecceeeeeehheeccccccccccceeeeccceeeeceeE Confidence 111111 1111 0001111110000001000 000000000 00 0 Q ss_pred HhhhHHHHHHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCcee Q lcl|Aclame:pro 45 LETNETIFSAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQPS 124 (409) Q Consensus 45 ~~~~~~v~~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~~~ 124 (409) ....+.-.-+++--|..+...++.+... . ...++..+.....-......+..+....+..-.+... ....++... T Consensus 199 i~~v~p~~~~~dp~a~~~~d~~~v~~~~-~-t~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~ 273 (651) T protein:vir:80 199 FEVLDMFDCFYDPNVTDPNRGAFIRKLT-K-TKADILNLLSEGYYYGVDPLDVVEHKCKDTSDTKQDM---LSTFQGVTT 273 (651) T ss_pred EEEecHHHeeecCCCcCccccceeeeee-e-eHHHHHHHHhcccccchhhHHHHhhhccccccCCccc---cccccCCCc Confidence 0000111111122222222333221110 0 0011111111000000000011111100000000000 000000000 Q ss_pred EEEeeCCcce-----EEEEcCCcce-eEEEEEcCCCeEE---EEc---cceEEEecCcCcccccccccHHHHHHHHHHHH Q lcl|Aclame:pro 125 KLFLLNPDVV-----EMLIENQSRE-LYYSIHAATGNKL---IVH---NMDMLHFKHIVASNMVQGISPIDVLKNTTDFD 192 (409) Q Consensus 125 ~l~~l~p~~v-----~~~~~~~~~~-~~~~~~~~~g~~~---~~~---~~~vih~~~~~~~~~~~G~sp~~~~~~~i~~~ 192 (409) ..+ -+...| .+..+.++.. ..++....++... ..+ ..-.+|++.....+..||.|+++.+....... T Consensus 274 ~~~-~~~~~v~v~E~~~~~d~e~~~~~~~~v~~~g~~il~~~~~~~~~~~Pf~~~~~~~~~~~~yG~g~~~~~~~~q~~l 352 (651) T protein:vir:80 274 SLW-SPHQNVELLEYWGDIHLENKTYHDVVVTIMGNEVLRFEQNPYWCGRPFVIGTYIPTARQPYAMGALQPNLGMLHEL 352 (651) T ss_pred ccc-ccccceEEEEEEEEeeccCCceEEEEEEEcCcEEecccccCCCCCCCeeeecceecCccccCCChHHHHhHHHHHH Confidence 000 000001 1112222211 1122222211111 111 12456677666667889999999999888777 Q ss_pred HHHHHHHHHh--cCCCceeEEecCCcCCHHHHHHHHHHHHHHhcCCCceeecCCCceeeeccCChhhHH-HHHHHHHHHH Q lcl|Aclame:pro 193 NAVRTFNLTE--MQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYEENGGILFQEPGVEIEPLPKKYVSED-IVASENLTRE 269 (409) Q Consensus 193 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~~~l~~~~~d~~-~~e~~~~~~~ 269 (409) +.+.+..+.. ....+.+++..++..+++++. ...|++++.....++.++...+.+.+ .......... T Consensus 353 n~l~~~~ld~~~~~~~~~~~v~~d~~~~~~~l~----------~~pg~vi~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~ 422 (651) T protein:vir:80 353 NIITNQRLDNLELAIDQMYTLRSDGLLQPEDVY----------TEPGKVFLVSDHGDLQPLANQSSNFSITYQESSFLES 422 (651) T ss_pred HHHHHHHHHHHHHHhCCcEEecCCccccHHHhh----------cCCCceEEecCCCCceeeccCcccchhHHHHHHHHHH Confidence 7666554433 233445555555555544321 13566777776667777655333322 2345666677 Q ss_pred HHHHHhcCChhhcCCcccC--ccccHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcChh-------h------c------- Q lcl|Aclame:pro 270 RVANVFQLPSIFLNARSNT--NFAKNE-ELNRFYLQHTLLPIVKQYEEEFNRKLLTKT-------D------R------- 326 (409) Q Consensus 270 ~Ia~~fgvp~~~l~~~~~~--~~~~~e-~~~~~~~~~~l~P~~~~ie~~ln~~ll~~~-------~------~------- 326 (409) .+-.++||+...-|....+ +-+..+ .+...-....+.+.++.+.+++-.-|+... . + T Consensus 423 ~~~~~~gv~~~~~g~~~~~~~~~TAteI~~~~~~~~~~l~~v~~~l~~e~l~pl~~r~l~l~~~~~~~~~~~ri~~~~~~ 502 (651) T protein:vir:80 423 TIDKNFGTGNYVGANAARSGERVTAAEVAAVREAGGNRLSGIHKHIEETSLLVLLEKVMHLVQQFTDQPGMVRVAGDEAG 502 (651) T ss_pred HHHHHhcCChHHhCCCccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccceeecccccc Confidence 8889999998776543322 111112 222233344555555555554332221100 0 0 Q ss_pred --------cccceEEecchhhhhhhHH---HHHHHHHHHHhcCCcCH------------HHHHHHhCCCCCCCCCEEeec Q lcl|Aclame:pro 327 --------EKNRYFKFNVKSYLRADSA---TQAEVYFKAVRSGYYTI------------NDIREWEDLPPVEGGDKPLIS 383 (409) Q Consensus 327 --------~~~~~~~~d~~~l~~~d~~---~~~~~~~~~~~~g~~T~------------NE~R~~~g~~p~~~gd~~~~~ 383 (409) .......+++..+-..... .....+..+++.+.-.+ -++.+..|++ ..+.++.+ T Consensus 503 ~~~~~~i~~~dl~~~~~iv~~g~~~~~~r~~~~~~l~~~~q~~~~~p~~~~~~~~~~~~~~l~~~~g~~---~~~~~l~~ 579 (651) T protein:vir:80 503 AYEYYELDVEDLQKEVRLVPIGSDHVIERKQYIEDRLTFIQAVAQVPEMGQLVDYKRILVDLLQHWGFE---EPEAYLKQ 579 (651) T ss_pred cccccccCccceeeeeeeeeccHHHHHHHHHHHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHcCCC---CcHHhcCC Confidence 0011122222211111111 11222222232211111 1223334553 22333333 Q ss_pred ccccchhccccc---ccccCCCCCCCCCC Q lcl|Aclame:pro 384 GDLYPIDTPLEL---RKSLKGGDKNVNES 409 (409) Q Consensus 384 ~n~~~~~~~~~~---~~~~~gg~~n~~~~ 409 (409) ....+...+.+. +....+.+ .+. T Consensus 580 ~~q~~~~~~~~~~~~q~~~~~~~---a~~ 605 (651) T protein:vir:80 580 QDQQAPANPQEALLSQAKDVGGQ---AMS 605 (651) T ss_pred CccchhhhhhHHHHhhHHHHHHH---HHH Confidence 221111110000 00000000 000 No 249 >protein:vir:96783 Length: 488 # NCBI annotation: putative structural protein # Family: family:all:584 # MgeID: mge:1629 # MgeName: phiHSIC # Cross-refs: genbank:acc:YP_224240;genbank:gi:62362375;genbank:GeneID:3345722 Probab=21.19 E-value=2.6 Score=18.27 Aligned_cols=379 Identities=7% Similarity=-0.027 Sum_probs=148.2 Q ss_pred Ccchh----------hhhhhhh-------hhhcccccCcccccccccccCCCCccccch------hH-----HhhhHHHH Q lcl|Aclame:pro 1 MAKEN----------IVTRIKK-------KLIDNWIDQSASKLYDFSPWKNKSFWGVIN------NT-----LETNETIF 52 (409) Q Consensus 1 M~~~~----------~~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~------~~-----~~~~~~v~ 52 (409) |.... -|.++.- .....++++.... .........+..... ++ +.=.++.. T Consensus 14 m~V~~~hp~y~a~~~~W~~~~d~g~~~~k~~g~~YLPk~~~~--~~~~~~d~~y~~~~~~~~~~y~~~~~~rA~~~n~~~ 91 (488) T protein:vir:96 14 MLTPIYHPDYLVNAPQWLRNLDCVMDNIKRKKQTYLPNLGAI--PPEAKTDPKVTALAAKIEKDWEDLTWRLANYVNIVN 91 (488) T ss_pred ecccccCHHHHHHhhhhhHhhhhhhHHHHHhhhhcCCCCCCc--cccccCcchhhhhhccchhhhHhhhhhccccCchhH Confidence 22110 0111100 0011223222110 000111111111110 11 11124555 Q ss_pred HHHHHHHHhhccCceeEeeccccccchhhhhhhccccCCCCHHHHHHHHHHHHHhcCCeEEEeeecCCCc---------- Q lcl|Aclame:pro 53 SAITKLSNSMASLPLKMYEDYKVVNTEVSDLLTVSPNNSLSSFDFINQIETIRNEKGNAYVLIERDIYHQ---------- 122 (409) Q Consensus 53 ~~i~~ia~~ia~lp~~~~~~~~~~~~~~~~~L~~~pn~~~s~~~f~~~~~~~~l~~G~a~~~~~~~~~G~---------- 122 (409) .+++.++..+.+-|..+.- .....+..++.+-=-...+-.+|.+.++...+.+|.+++++.....+. T Consensus 92 ~tl~~l~G~vfrk~p~~~~---~~~~~l~~l~~d~D~~G~~L~~f~~~~~~~~l~~G~~~ilVD~P~~~~T~ade~~~~~ 168 (488) T protein:vir:96 92 PTMNAITGAVMRREPEFDT---MDNPVLIGLRDNIDGKGNGIDQECKQALNALQWGSRCGWLVRSHPESATMADWNKGKK 168 (488) T ss_pred HHHHHhcchhhccCceecc---CCcHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcCeEEEEEecCCCcCCHHHHHHhcC Confidence 5666665555555554411 111235555554444567889999999999999999999988765321 Q ss_pred eeEEEeeCCcceE----------------------EEEcCCc---ceeEEEEEcCCCe--EEEEc-----cc-------- Q lcl|Aclame:pro 123 PSKLFLLNPDVVE----------------------MLIENQS---RELYYSIHAATGN--KLIVH-----NM-------- 162 (409) Q Consensus 123 ~~~l~~l~p~~v~----------------------~~~~~~~---~~~~~~~~~~~g~--~~~~~-----~~-------- 162 (409) ..-+..+.|..+- ...|..+ ...+.++...+|. .+.+. .+ T Consensus 169 rPy~~~~~a~~IinW~~~~v~G~~~L~~v~lrE~~~~~D~~~~~~~~~~~~~~l~~g~~~v~~~~~~~~~~e~~~~~~g~ 248 (488) T protein:vir:96 169 LPTAAFYDALHIIDWEVEYIDGEEKLTYLSLLEDYQERDGGTYVSKQRLINHRLVDGLCEFQEVTDDEYSDEWTPVLINS 248 (488) T ss_pred CcEEEEechhhhcCcceeccCCceeeEEEEEEEEEEeccCCCcccceEEEEEEEECcEEEEEEEecCCcccceEeecCCC Confidence 1112222221110 0112111 1111111111221 11110 00 Q ss_pred ------eEEEecCcCcccccccccHHHHHHHH-HHHHHHHHHH-HHHhcCCCceeEEecCCcCCHHHHHHHHHHHHHHhc Q lcl|Aclame:pro 163 ------DMLHFKHIVASNMVQGISPIDVLKNT-TDFDNAVRTF-NLTEMQKPDSFMLKYGSNVSTEKRQQVLEDFKQYYE 234 (409) Q Consensus 163 ------~vih~~~~~~~~~~~G~sp~~~~~~~-i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (409) -++++-. ...+...+.+|+..+++. +...+....+ ..-.+...|..+. ....++++........ ...- T Consensus 249 ~~l~~IP~v~~~~-~~~~~~~~~pPLldLA~lnl~Hy~~ssd~~~il~~~~~p~lv~-~~~~~~~~~~~~~~~~--g~~~ 324 (488) T protein:vir:96 249 KQSDTIPFFLASS-QSNEWCIDSTPLTSLAEISLSIYVMNAYSNKAMILANEAKWMV-DMGDMNKTMASEMNPL--GFTL 324 (488) T ss_pred cccCeeEEEEEec-CCCCCCCCCCchHHHHHHHHHHHhhhhHHHHHHHhcCCceeee-ccCCCCcccccccccc--eeee Confidence 1222211 123445578887765543 3333322222 2223444444443 2233444433332210 0111 Q ss_pred CCCceeecCCC-ceeeeccCChhhHHHHHHHHHHHHHHHHHhcCChhhcCCcccCccccHHHHHHHHHHHHHHHHHHHHH Q lcl|Aclame:pro 235 ENGGILFQEPG-VEIEPLPKKYVSEDIVASENLTRERVANVFQLPSIFLNARSNTNFAKNEELNRFYLQHTLLPIVKQYE 313 (409) Q Consensus 235 ~~~~~~vl~~g-~~~~~l~~~~~d~~~~e~~~~~~~~Ia~~fgvp~~~l~~~~~~~~~~~e~~~~~~~~~~l~P~~~~ie 313 (409) +..-+...+.| ++|.+.+.+..- .+..+-..++++ ..| ..++.- ..+..+.............|.-++.+++ T Consensus 325 ~~~~~~~~~~g~~~~~e~~~~~l~---~~~l~~l~~qm~-~~G--a~l~~~-~~~~Ta~~~~~~~~~~~S~L~~~a~~le 397 (488) T protein:vir:96 325 AGRMPYYVKNGDVKVIQAQFSPET---ENKVEKLFEQAV-KVG--ASLFTQ-QSNETATGAAIRSGSSTASMATLGNNVE 397 (488) T ss_pred cccccccccCCceeecCCchhHHH---HHHHHHHHHHHH-HHh--HhhccC-CCcchHHHHHHHHHHhhHHHHHHHHHHH Confidence 11122233333 566665543221 122222222321 122 122321 1111122223334445677788899999 Q ss_pred HHHHHhhcChhhc---------cccceEEecchhhhhhhHHHHHHHHHHHHhcCCcCHHHHHHHhCCCCCCCCCEEeecc Q lcl|Aclame:pro 314 EEFNRKLLTKTDR---------EKNRYFKFNVKSYLRADSATQAEVYFKAVRSGYYTINDIREWEDLPPVEGGDKPLISG 384 (409) Q Consensus 314 ~~ln~~ll~~~~~---------~~~~~~~~d~~~l~~~d~~~~~~~~~~~~~~g~~T~NE~R~~~g~~p~~~gd~~~~~~ 384 (409) ++++..|-.--.. .....+..+.+=....-....++++.+++.+|.++....++.+-.-.+=..| T Consensus 398 ~al~~~l~~~A~w~g~~~~~~~~~~~~~~in~dF~~~~ld~~~~~al~~~~~~G~Is~~t~~~~L~~~gvl~~d------ 471 (488) T protein:vir:96 398 DTVRNMLRFIMRYFEGTNLYVNPDELVFKLNRDYFDVEVNPQMLQVAYAAMMEGNLPQVSWFELLKRARVVRGD------ 471 (488) T ss_pred HHHHHHHHHHHHHcCCCCCCcCccceEEEeccCCCCccCCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCcCCcc------ Confidence 9988655321110 1122344443322222223356777788899999999988876443220000 Q ss_pred cccchhcccccccccCCCCCCC Q lcl|Aclame:pro 385 DLYPIDTPLELRKSLKGGDKNV 406 (409) Q Consensus 385 n~~~~~~~~~~~~~~~gg~~n~ 406 (409) ...-+...+ .+.+.-+- T Consensus 472 -~~~e~~~~~----ie~~g~~~ 488 (488) T protein:vir:96 472 -MSKEEFDEH----IAELGFGM 488 (488) T ss_pred -CCHHHHHHH----HhhcCCCC Confidence 000000000 00011111 Done!