BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:959|NCBI_annot:terminase|genbank:acc:NP_ 076613;genbank:gi:13095721;genbank:GeneID:920277 (592 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: term... 1226 0.0 gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Ph... 568 e-164 gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: pha... 568 e-164 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 149 6e-38 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 149 1e-37 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 146 8e-37 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 146 8e-37 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 145 2e-36 gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putati... 132 1e-32 gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: lar... 131 3e-32 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 128 2e-31 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 127 4e-31 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 125 1e-30 gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Ter... 122 1e-29 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 121 2e-29 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 117 5e-28 gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: termi... 114 5e-27 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 108 2e-25 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 103 6e-24 gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: pu... 102 9e-24 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 97 4e-22 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 89 1e-19 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 89 1e-19 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 89 2e-19 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 88 2e-19 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 87 5e-19 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 87 5e-19 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 87 6e-19 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 87 6e-19 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 87 6e-19 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 87 6e-19 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 86 9e-19 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 86 9e-19 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 85 2e-18 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 82 1e-17 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 80 7e-17 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 62 2e-11 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 60 7e-11 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 60 7e-11 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 60 8e-11 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 60 8e-11 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 56 1e-09 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 55 2e-09 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 55 3e-09 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 54 4e-09 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 54 4e-09 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 53 1e-08 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 52 2e-08 gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: term... 52 2e-08 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 52 2e-08 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 50 6e-08 gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: ter... 49 1e-07 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 47 9e-07 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 45 2e-06 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 44 6e-06 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 43 1e-05 gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: pu... 42 1e-05 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 42 2e-05 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 40 9e-05 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 39 1e-04 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 39 2e-04 gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp... 39 2e-04 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 38 3e-04 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 35 0.002 gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: puta... 34 0.005 gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: pr... 32 0.018 gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: put... 30 0.096 gi|13482|lcl|protein:vir:9757 Length: 471 # NCBI annotation: put... 27 0.60 gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: t... 27 0.72 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 27 0.84 gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2... 26 1.1 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 26 1.5 gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp1... 25 1.8 gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: g... 25 2.0 gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp... 25 2.2 gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p0... 25 2.9 gi|17283|lcl|protein:vir:398 Length: 245 # NCBI annotation: gp13... 25 2.9 gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: ph... 25 3.3 gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: ter... 24 5.2 gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp... 24 5.2 gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: put... 24 6.1 gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: g... 23 7.5 gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: t... 23 7.5 gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: te... 23 9.4 >gi|17547|lcl|protein:vir:959 Length: 592 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:19 # MgeName: bIL285 # Cross-refs: genbank:acc:NP_076613;genbank:gi:13095721;genbank:GeneID :920277 Length = 592 Score = 1226 bits (3171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 592/592 (100%), Positives = 592/592 (100%) Query: 1 MVEVDNFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEG 60 MVEVDNFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEG Sbjct: 1 MVEVDNFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEG 60 Query: 61 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT 120 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT Sbjct: 61 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT 120 Query: 121 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE 180 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE Sbjct: 121 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE 180 Query: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN Sbjct: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 Query: 241 KLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVT 300 KLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVT Sbjct: 241 KLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVT 300 Query: 301 REITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAY 360 REITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAY Sbjct: 301 REITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAY 360 Query: 361 FDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVIT 420 FDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVIT Sbjct: 361 FDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVIT 420 Query: 421 HAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVH 480 HAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVH Sbjct: 421 HAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVH 480 Query: 481 FDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVAN 540 FDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVAN Sbjct: 481 FDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVAN 540 Query: 541 VKAIEKTDDAIQFEKVMPNQRIDLFDASVFASRGMLEEKEQKSKKDAWGIGN 592 VKAIEKTDDAIQFEKVMPNQRIDLFDASVFASRGMLEEKEQKSKKDAWGIGN Sbjct: 541 VKAIEKTDDAIQFEKVMPNQRIDLFDASVFASRGMLEEKEQKSKKDAWGIGN 592 >gi|12641|lcl|protein:vir:80117 Length: 572 # NCBI annotation: Phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1877 # MgeName: bacteriophage bv1 # Cross-refs: genbank:acc:YP_001425601;genbank:gi:155042934;genbank:Ge neID:5469543 Length = 572 Score = 568 bits (1463), Expect = e-164, Method: Compositional matrix adjust. Identities = 289/590 (48%), Positives = 405/590 (68%), Gaps = 23/590 (3%) Query: 1 MVEVDNFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEG 60 M + N++ ++++K ++ G +A E QAA+RF DLE+ K+DF + +FVI +IE Sbjct: 1 MRKYKNYDAVMEYAKSIVDGRKVACRELIQAAKRFFKDLENPKYDFNPREAEFVIQIIEK 60 Query: 61 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT 120 T VH QGE +G + P L+PWQKF+ NL GF+ KGT IRRF EA IF+PRK GKT Sbjct: 61 TFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKT 120 Query: 121 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE 180 A+L WA +++R SGSK YI + +L+Q+ +SF F+ +N+ ++ + + RI +NNQE Sbjct: 121 RLIAALAWALALLERQSGSKIYITSAALQQSLQSFEFILFNLRQM-GEEQNFRILNNNQE 179 Query: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 +S+ +F DG I A+A DK DSLN N I DE+H++K K+Y ++K + KAY N Sbjct: 180 NSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTP--KQYNIIKEAMKAYTN 237 Query: 241 KLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNI--INP 298 KL++GI+TAGD F QR+ KK+L T+ D+AY F+F+C A++DE G + NP Sbjct: 238 KLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEAY---FVFICKADEDENGEVDYTNP 294 Query: 299 VTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMD 358 + E P+ VT+ DD++ +A QA +PQ + +FL KSLNI+T+ M Sbjct: 295 IEHE-----------KANPNYGVTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMK 343 Query: 359 AYFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIV 418 AYF+IDEF+ S++++ WT+E+L+KL I W+GGADLSK+HDLTA+ALYGNY +DI Sbjct: 344 AYFNIDEFKKSDRKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNY----NGVDIA 399 Query: 419 ITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKS 478 ITHA+FP A KA+ED+IPLF W+++GW T++NT TV + D+VKWF MR KGFKIK Sbjct: 400 ITHAWFPIVAATRKAEEDNIPLFGWRDDGWLTMTNTPTVNFSDVVKWFETMRAKGFKIKQ 459 Query: 479 VHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCV 538 V FD+KFGREFFM MK+++F +VD PQ ++KKSEGFRRIE + K+ + YY+++ A+EYCV Sbjct: 460 VGFDRKFGREFFMAMKQKRFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCV 519 Query: 539 ANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFASRGMLEEKEQKSKKDAW 588 NV AIEKTDD IQFEK+ RID+FDA+VFA+ MLE E+ + W Sbjct: 520 QNVHAIEKTDDMIQFEKIEDKHRIDIFDATVFAAIRMLENMEKAATATKW 569 >gi|5726|lcl|protein:vir:95379 Length: 573 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1567 # MgeName: GBSV1 # Cross-refs: genbank:acc:YP_764473;genbank:gi:115334627;genbank:GeneI D:5179266 Length = 573 Score = 568 bits (1463), Expect = e-164, Method: Compositional matrix adjust. Identities = 290/593 (48%), Positives = 406/593 (68%), Gaps = 23/593 (3%) Query: 1 MVEVDNFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEG 60 M + N++ ++++K ++ G +A E QAA+RF DLE+ K+DF + +FVI +IE Sbjct: 1 MRKYKNYDAVMEYAKSIVDGRKVACRELIQAAKRFFKDLENPKYDFNPREAEFVIQIIEK 60 Query: 61 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT 120 T VH QGE +G + P L+PWQKF+ NL GF+ KGT IRRF EA IF+PRK GKT Sbjct: 61 TFVHDQGERLDGTPLRGEPFLLEPWQKFIIYNLLGFYLKGTKIRRFKEAFIFIPRKNGKT 120 Query: 121 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE 180 A+L WA +++R SGSK YI + +L+Q+ +SF F+ +N+ ++ + + RI +NNQE Sbjct: 121 RLIAALAWALALLERQSGSKIYITSAALQQSLQSFEFILFNLRQM-GEEQNFRILNNNQE 179 Query: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 +S+ +F DG I A+A DK DSLN N I DE+H++K K+Y ++K + KAY N Sbjct: 180 NSISGEFSDGSIYIRALAANPDKQDSLNCNVGIADEMHAYKTP--KQYNIIKEAMKAYTN 237 Query: 241 KLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNI--INP 298 KL++GI+TAGD F QR+ KK+L T+ D+AY F+F+C A++DE G + NP Sbjct: 238 KLMIGITTAGDDMTSFCYQRLQYCKKILDETVTDEAY---FVFICKADEDENGEVDYTNP 294 Query: 299 VTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMD 358 + E P+ VT+ DD++ +A QA +PQ + +FL KSLNI+T+ M Sbjct: 295 IEHE-----------KANPNYGVTIRPDDIMNDALQAQNDPQQRKDFLAKSLNIYTSPMK 343 Query: 359 AYFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIV 418 AYF+IDEF+ S++++ WT+E+L+KL I W+GGADLSK+HDLTA+ALYGNY +DI Sbjct: 344 AYFNIDEFKKSDRKYDWTIEQLAKLGIDWFGGADLSKLHDLTAAALYGNYN----GVDIA 399 Query: 419 ITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKS 478 ITHA+FP A KA+ED+IPLF W+++GW T++NT TV + D+VKWF MR KGFKIK Sbjct: 400 ITHAWFPIVAATRKAEEDNIPLFGWRDDGWLTMTNTPTVNFSDVVKWFETMRAKGFKIKQ 459 Query: 479 VHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCV 538 V FD+KFGREFFM MK+++F +VD PQ ++KKSEGFRRIE + K+ + YY+++ A+EYCV Sbjct: 460 VGFDRKFGREFFMAMKQKRFNIVDQPQYYYKKSEGFRRIEKQVKDGKFYYLHSQAFEYCV 519 Query: 539 ANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFASRGMLEEKEQKSKKDAWGIG 591 NV AIEKTDD IQFEK+ RID+FDA+VFA+ MLE E+ + W G Sbjct: 520 QNVHAIEKTDDMIQFEKIEDKHRIDIFDATVFAAIRMLENMEKAATATKWLKG 572 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 149 bits (377), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 142/534 (26%), Positives = 247/534 (46%), Gaps = 48/534 (8%) Query: 13 WSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKHHQFDFVIGLIEGTIVHVQGENKE 71 +++ V G + K+ +R L LE+ KW F I IE +G ++ Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQ 77 Query: 72 GKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 + LQPWQ F+ +LFG+ K T +RRF EALIF+ RK GKT + + Sbjct: 78 --------LVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 132 IVDRASGSKTYIVANSLKQTQESFG---FLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFG 188 D +G++ +++AN +KQ + F + K+R + + +R +H D Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPLR-------DEIHYD-- 180 Query: 189 DGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGIST 248 I A+ DKLD LN + I DEIH +K K ++KNS+ A LL+ I+T Sbjct: 181 ATISKIMPQASDSDKLDGLNTHMGIFDEIHEFK--DYKLISVIKNSRAARLQPLLIYITT 238 Query: 249 AGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDD 308 AG +G L V + L I+D + F +L + + D+ N + + Sbjct: 239 AGYQLDGPLVNMVEAGRDTLDRIIED---ERTFYYLASLDDDDDINDSSNWIK------- 288 Query: 309 PEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRF 368 P+L V++ LD++ E +A P + +F+ K NIF N+ + F ID Sbjct: 289 ------ANPNLGVSIDLDEMKEEWEKAKRTPDERGDFITKRFNIFANNDEMSF-IDYPTL 341 Query: 369 SNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSR 428 +++EL P T G DLS+ D TA+ + GK V+TH++ PK + Sbjct: 342 QKNNDIISLDELEGRPCTI--GYDLSETEDFTAACATFALD-NGKV--AVLTHSWIPKHK 396 Query: 429 AIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGRE 488 +E + E IP EW+E+G T+ + + Y D++ W ++M ++ + ++ + +D+ + Sbjct: 397 -VEYSNE-KIPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKM-NEHYVVEKITYDRANAFK 453 Query: 489 FFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVANVK 542 +K F+ + Q S + ++ + ++ + NN ++ + NV+ Sbjct: 454 LNQELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQ 507 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 149 bits (375), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 142/534 (26%), Positives = 247/534 (46%), Gaps = 48/534 (8%) Query: 13 WSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKHHQFDFVIGLIEGTIVHVQGENKE 71 +++ V G + K+ +R L LE+ KW F I IE +G ++ Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQ 77 Query: 72 GKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 + LQPWQ F+ +LFG+ K T +RRF EALIF+ RK GKT + + Sbjct: 78 --------LVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 132 IVDRASGSKTYIVANSLKQTQESFG---FLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFG 188 D +G++ +++AN +KQ + F + K+R + + +R +H D Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENFRPLR-------DEIHYD-- 180 Query: 189 DGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGIST 248 I A+ DKLD LN + I DEIH +K K ++KNS+ A LL+ I+T Sbjct: 181 ATISKIMPQASDSDKLDGLNTHMGIFDEIHEFK--DYKLISVIKNSRAARLQPLLIYITT 238 Query: 249 AGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDD 308 AG +G L V + L I+D + F +L + + D+ N + + Sbjct: 239 AGYQLDGPLVDMVEAGRDTLDQIIED---ERTFYYLASLDDDDDINDSSNWIK------- 288 Query: 309 PEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRF 368 P+L V++ LD++ E +A P + +F+ K NIF N+ + F ID Sbjct: 289 ------ANPNLGVSIDLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSF-IDYPTL 341 Query: 369 SNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSR 428 +++EL P T G DLS+ D TA+ + GK V+TH++ PK + Sbjct: 342 QKNNEIISLDELEGRPCTI--GYDLSETEDFTAACATFALD-NGKV--AVLTHSWIPKHK 396 Query: 429 AIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGRE 488 +E + E IP EW+E+G T+ + + Y D++ W ++M ++ + ++ + +D+ + Sbjct: 397 -VEYSNE-KIPYREWEEDGLLTIQDKPYIDYQDVLNWIIKM-NEHYVVEKITYDRANAFK 453 Query: 489 FFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVANVK 542 +K F+ + Q S + ++ + ++ + NN ++ + NV+ Sbjct: 454 LNQELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQ 507 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 146 bits (368), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 143/532 (26%), Positives = 246/532 (46%), Gaps = 44/532 (8%) Query: 13 WSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKHHQFDFVIGLIEGTIVHVQGENKE 71 +++ V G + K+ +R L LE+ KW F I IE +G ++ Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQ 77 Query: 72 GKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 + LQPWQ F+ +LFG+ K T +RRF EALIF+ RK GKT + + Sbjct: 78 --------LVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 132 IVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMR-IRDNNQEHSVHVDFGDG 190 D +G++ +++AN +KQ + F ++ K R +RD +H D Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRD-----EIHYD--AT 182 Query: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 I A+ DKLD LN + I DEIH +K K ++KNS+ A LL+ I+TAG Sbjct: 183 ISKIMPQASDSDKLDGLNTHMGIFDEIHEFK--DYKLISVIKNSRAARLQPLLIYITTAG 240 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPE 310 +G L V + L I+D + F +L + + D+ N + + Sbjct: 241 YQLDGPLVDMVEAGRDTLDQIIED---ERTFYYLASLDDDDDINDSSNWIK--------- 288 Query: 311 VLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSN 370 P+L V++ LD++ E +A P + +F+ K NIF N+ + F ID Sbjct: 289 ----ANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSF-IDYPTLQK 343 Query: 371 KQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAI 430 ++EEL P T G DLS+ D TA+ + GK V++H++ PK + + Sbjct: 344 NNEIVSLEELEGRPCTI--GYDLSETEDFTAACATFALD-NGKV--AVLSHSWIPKHK-V 397 Query: 431 EKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGREFF 490 E + E IP EW+E+G T+ + + Y D++ W ++M ++ + ++ + +D+ + Sbjct: 398 EYSNE-KIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKM-NEHYVVEKITYDRANAFKLN 455 Query: 491 MMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVANVK 542 +K F+ + Q S + ++ + ++ + NN ++ + NV+ Sbjct: 456 QELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQ 507 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 146 bits (368), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 143/532 (26%), Positives = 246/532 (46%), Gaps = 44/532 (8%) Query: 13 WSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKHHQFDFVIGLIEGTIVHVQGENKE 71 +++ V G + K+ +R L LE+ KW F I IE +G ++ Sbjct: 18 YAEQVTQGKIKTSKYVKKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQ 77 Query: 72 GKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 + LQPWQ F+ +LFG+ K T +RRF EALIF+ RK GKT + + Sbjct: 78 --------LVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 132 IVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMR-IRDNNQEHSVHVDFGDG 190 D +G++ +++AN +KQ + F ++ K R +RD +H D Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRD-----EIHYD--AT 182 Query: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 I A+ DKLD LN + I DEIH +K K ++KNS+ A LL+ I+TAG Sbjct: 183 ISKIMPQASDSDKLDGLNTHMGIFDEIHEFK--DYKLISVIKNSRAARLQPLLIYITTAG 240 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPE 310 +G L V + L I+D + F +L + + D+ N + + Sbjct: 241 YQLDGPLVDMVEAGRDTLDQIIED---ERTFYYLASLDDDDDINDSSNWIK--------- 288 Query: 311 VLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSN 370 P+L V++ LD++ E +A P + +F+ K NIF N+ + F ID Sbjct: 289 ----ANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSF-IDYPTLQK 343 Query: 371 KQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAI 430 ++EEL P T G DLS+ D TA+ + GK V++H++ PK + + Sbjct: 344 NNEIVSLEELEGRPCTI--GYDLSETEDFTAACATFALD-NGKV--AVLSHSWIPKHK-V 397 Query: 431 EKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGREFF 490 E + E IP EW+E+G T+ + + Y D++ W ++M ++ + ++ + +D+ + Sbjct: 398 EYSNE-KIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKM-NEHYVVEKITYDRANAFKLN 455 Query: 491 MMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVANVK 542 +K F+ + Q S + ++ + ++ + NN ++ + NV+ Sbjct: 456 QELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQ 507 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 145 bits (365), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 142/532 (26%), Positives = 246/532 (46%), Gaps = 44/532 (8%) Query: 13 WSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKHHQFDFVIGLIEGTIVHVQGENKE 71 +++ V G + ++ +R L LE+ KW F I IE +G ++ Sbjct: 18 YAEQVTQGKIKTSKYVRKECERHLRYLENGGKWVFDEELAHRPIRFIEKFCKPSKGSKRQ 77 Query: 72 GKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 + LQPWQ F+ +LFG+ K T +RRF EALIF+ RK GKT + + Sbjct: 78 --------LVLQPWQHFIIGSLFGWVHKETKLRRFKEALIFMGRKNGKTTTISGVANYAV 129 Query: 132 IVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMR-IRDNNQEHSVHVDFGDG 190 D +G++ +++AN +KQ + F ++ K R +RD +H D Sbjct: 130 SQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLDKNFRTLRD-----EIHYD--AT 182 Query: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 I A+ DKLD LN + I DEIH +K K ++KNS+ A LL+ I+TAG Sbjct: 183 ISKIMPQASDSDKLDGLNTHMGIFDEIHEFK--DYKLISVIKNSRAARLQPLLIYITTAG 240 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPE 310 +G L V + L I+D + F +L + + D+ N + + Sbjct: 241 YQLDGPLVDMVEAGRDTLDQIIED---ERTFYYLASLDDDDDINDSSNWIK--------- 288 Query: 311 VLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSN 370 P+L V++ LD++ E +A P + +F+ K NIF N+ + F ID Sbjct: 289 ----ANPNLGVSINLDEMKEEWEKAKRTPAERGDFITKRFNIFANNDEMSF-IDYPTLQK 343 Query: 371 KQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAI 430 ++EEL P T G DLS+ D TA+ + GK V++H++ PK + + Sbjct: 344 NNEIVSLEELEGRPCTI--GYDLSETEDFTAACATFALD-NGKV--AVLSHSWIPKHK-V 397 Query: 431 EKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGREFF 490 E + E IP EW+E+G T+ + + Y D++ W ++M ++ + ++ + +D+ + Sbjct: 398 EYSNE-KIPYREWEEDGLLTVQDKPYIDYQDVLNWIIKM-NEHYVVEKITYDRANAFKLN 455 Query: 491 MMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVANVK 542 +K F+ + Q S + ++ + ++ + NN ++ + NV+ Sbjct: 456 QELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQ 507 >gi|593|lcl|protein:vir:481 Length: 570 # NCBI annotation: putative terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:11 # MgeName: P27 # Cross-refs: genbank:acc:NP_543088;swissprot:trembl:q8w631;genbank:gi :18249900;uniprot:Q8W631;genbank:GeneID:929687 Length = 570 Score = 132 bits (332), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 144/587 (24%), Positives = 243/587 (41%), Gaps = 45/587 (7%) Query: 6 NFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESD-----KWDFKHHQFDFVIGLIEG 60 N A Q+++DV+ G A QR LDDLE+ + F + + V I+ Sbjct: 2 NVNAANQYARDVVRGKIQVCRYVVLACQRHLDDLENSAKKNYPFKFDKDKAERVAKFIQ- 60 Query: 61 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT 120 + H +GE +FK P+ L+PWQ F +FG+ K + +RRF EA +PRK GK+ Sbjct: 61 LLPHTKGE----WAFKRMPITLEPWQLFCICVVFGWVRKKSGLRRFREAYNEIPRKNGKS 116 Query: 121 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE 180 A +A + D G++ Y A + KQ E F ++ + I + Q Sbjct: 117 AMSAGVGLYMFACDDEFGAEVYSGATTEKQAWEVFRPARLMAQRTEPLREAFGIEVHAQS 176 Query: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 S D G + + D D + + ++DE H + Y M+ A R Sbjct: 177 MSRPED-GARFEPLIG-----DPGDGASPSCALIDEYHEHQTDAL--YQTMQTGMGARRQ 228 Query: 241 KLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVT 300 L+ GI+TAG G + + ++L G + + D F + T + + Sbjct: 229 PLIFGITTAGYNIEGPCYDKRREVIEMLEGIVPN---DELFGIIYTIDDGDDWT------ 279 Query: 301 REITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAY 360 DP VL P++ ++V D L+++ R A+ P+ F K LNI+ + DA+ Sbjct: 280 -------DPAVLRKANPNMGISVYSDYLLSQQRAAINNPRKVGVFKTKHLNIWVAAKDAF 332 Query: 361 FDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVIT 420 F++ ++ + S T+E T DL++ DL A E GK+ + Sbjct: 333 FNLVNWQ-KCEDRSLTLERFEGH--TCILAFDLARKLDLNAMVRLFTREIDGKTHYYCVA 389 Query: 421 HAFFPKSRAIEKAQEDDIPLFE----WQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKI 476 FF I A D E W E G+ T+++ + Y +I++ E ++ + Sbjct: 390 PKFFVPYDTIYSADVTDSRTAERYQKWVEGGFITVTDGAEIDYREILESAKEA-NRLNAV 448 Query: 477 KSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEY 536 + D + + + Q + S+ + +E + ++ N + Sbjct: 449 EESPIDPHGATNLSHHLADENLNPITIIQNYTNMSDPMKELEAAIEAGRFHHDGNPVMTW 508 Query: 537 CVANV--KAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEEKE 580 C++NV K I DD ++ K +ID A + A R ML EKE Sbjct: 509 CISNVIGKHIPGDDDVVRPIKQGNENKIDGAVALIMAIGRCMLFEKE 555 >gi|19315|lcl|protein:vir:4508 Length: 577 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:97 # MgeName: V # Cross-refs: genbank:acc:NP_599034;genbank:gi:19548992;genbank:GeneID :935222 Length = 577 Score = 131 bits (329), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 141/586 (24%), Positives = 246/586 (41%), Gaps = 42/586 (7%) Query: 6 NFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHV 65 N A Q+++DV+ G +A QA QR LDDL ++K ++FD + + + Sbjct: 8 NVNAANQYARDVVRGKIVACQFVIQACQRHLDDLMAEKSKSFRYRFDKDLAERVAKFIQL 67 Query: 66 QGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAAS 125 K +FK P+ L+PWQ FV FG+ KG+ +RRF E +PRK GK+A +A Sbjct: 68 LPHTKGEWAFKRMPITLEPWQLFVICCAFGWVNKGSRLRRFREVYTEIPRKNGKSAISAG 127 Query: 126 LTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + D G++ Y A + KQ E F ++ + I N + Sbjct: 128 VALYCFACDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPMLTEAFGIEVNASNMNRPE 187 Query: 186 DFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMG 245 D G + + + D + + ++DE H + A Y M A R L+ Sbjct: 188 D-GARFEPLIG-----NPGDGSSPHCAVVDEYH--EHATDALYTTMLTGMGARRQPLMWA 239 Query: 246 ISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITT 305 I+TAG G + + ++L+G++ + D F + T ++ + Sbjct: 240 ITTAGYNIEGPCYDKRREVIEMLNGSVPN---DELFGIIYTVDEGDDWT----------- 285 Query: 306 IDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDE 365 DP+VL P++ V+V + L+++ ++A +L F K LNI+ ++ AYF++ Sbjct: 286 --DPQVLEKANPNIGVSVYREFLLSQQQRAKNNARLANVFKTKHLNIWVSARSAYFNLVS 343 Query: 366 FRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFF- 424 ++ S + S T+E+ P DL++ D+ + A E GK+ + F+ Sbjct: 344 WQ-SCEDKSLTLEQFEGQPCIL--AFDLARKLDMNSMARLYTREIDGKTHYYSVAPRFWV 400 Query: 425 PKSRAIEKAQEDDIPLFE----WQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVH 480 P + +D E W E G T+++ V Y ++ +E KI V Sbjct: 401 PYDTVYSVEKNEDRRTAERFQKWVEMGVLTVTDGAEVDY----RYILEEAKAANKISPVS 456 Query: 481 FDK--KFGREFFMM-MKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYC 537 FG + + V Q F S+ + +E ++ ++ N +C Sbjct: 457 ESPIDPFGATGLSHDLADEDLNPVTIVQNFANMSDPMKELEAAIESGRFHHDGNPIMTWC 516 Query: 538 VANV--KAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEEKE 580 + NV K + DD ++ K +ID A + R ML+E + Sbjct: 517 IGNVVGKNMPGNDDLVKPVKEQAENKIDGAVALIMTIGRAMLKEPD 562 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 128 bits (322), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 155/598 (25%), Positives = 270/598 (45%), Gaps = 61/598 (10%) Query: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHVQGENKE 71 +++ DV+ G +A K A QR +DDLE K ++FD L +I + Sbjct: 7 RYAIDVLEGKEVAGRYVKLACQRHIDDLERSKLAPYKYEFDLEKAL--ESIDFFEDLRFT 64 Query: 72 GKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 + L +Q F+ ++FG+ KGT RRF ++ + L RK K+ + + Sbjct: 65 DGEIAGQQVKLFGFQDFIVGSIFGWVCKGTGYRRFKKSYVQLARKNAKSLLNSGIGIKLA 124 Query: 132 IVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKM-RIRDNNQEHSVHVDFGDG 190 D+ ++ Y A +KQ + + +E I D++++ +I+D++ ++ G Sbjct: 125 AFDKYPNAQVYCTATKMKQARIVWKQARKFIE-IEPDLREIFKIKDHDAIIESLINGG-- 181 Query: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 +I A+ +D + + I+DE HS K K L+++ L+ I+TAG Sbjct: 182 --EIMALGRDTGTIDGFDPHGGIIDEYHSHKTNQMVK--LLEDGSVNQAESLISIITTAG 237 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPE 310 NG + K VL G + + D YFI++ A+ D + +I +P + Sbjct: 238 FNLNGPCYKEWEYCKNVLEGIVNN---DEYFIYI--AQMDVEDDIWDPN----NWLKANP 288 Query: 311 VLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSN 370 ++A + L+ L E++Q + LK FL KSLNI+ + FSN Sbjct: 289 LVAKLPKGLE---NLKRFAEESKQKGGD-DLK-NFLTKSLNIW------------YEFSN 331 Query: 371 KQH----SWTMEELSKLPI------TWYGGADLSKMHDLTASALYGNYEYKGKSID---- 416 Q+ W + SKL + T Y G DLS DLT+ AL YE++ ++ + Sbjct: 332 DQYIGPSVWKVGA-SKLTLENFKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEKVRK 390 Query: 417 -IVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVL---YDDIVKWFMEMRDK 472 + +H+F PK R E Q DD+P W E G T++ T + Y I+K+ ++ ++ Sbjct: 391 YFIHSHSFIPKRRVAEHIQSDDVPYDVWIENGLLTVTETLGGIKTDYKYIIKYLRDLIEE 450 Query: 473 -GFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQF-W--KKSEGFRRIEFKAKNKELYY 528 KI + +D F +++ F V+ Q W +E F ++E +A N E Y Sbjct: 451 FQLKIIQLGYDPHNADTFLQDLEELGFDCVEIFQSCKWLNDPTEDF-KLECEAGNIE-YN 508 Query: 529 VNNMAYEYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFASRGMLEEKEQKSKKD 586 N + V N K + ++ I+ +K + +RID DA + A + + ++ +K D Sbjct: 509 EENELLSWSVVNAKLVSNSNGEIKIDKNLQEKRIDPVDAVIDAYKLAFKSEKLNTKVD 566 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 127 bits (319), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 134/584 (22%), Positives = 248/584 (42%), Gaps = 47/584 (8%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDK-----WDFKHHQFDFVIGLIEGTI 62 E +++++DV+ G A + A +R LDDL + + W F + + LIE + Sbjct: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LL 67 Query: 63 VHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF 122 H +GE +FK + L+PWQKF + FG+ K T RRF E+ +PRK GK+ Sbjct: 68 PHTKGE----WAFKGQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVT 123 Query: 123 AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHS 182 AA + ++D G++ Y A + KQ E F V++ + I N + Sbjct: 124 AAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPAQLMVKRSPMLIDSAGIEVNASNMN 183 Query: 183 VHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKL 242 D G + I + D + + I+DE H + A Y M A R L Sbjct: 184 KPAD-GSRFEPIIG-----NPGDGASPSCAIVDEYH--EHDSAALYETMLTGMGARRQPL 235 Query: 243 LMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTRE 302 + I+TAG G + + ++L GT+ D D F ++ T ++ + Sbjct: 236 MFIITTAGANIEGPCFDKRRQVIEMLEGTVPD---DELFGWIWTIDEGDDWT-------- 284 Query: 303 ITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFD 362 DP VLA P++ ++V D L ++ ++A+ + F K LN++T++ YF+ Sbjct: 285 -----DPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFN 339 Query: 363 IDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHA 422 +++++ S + S T+E+ D+++ DL + A ++ G+ + Sbjct: 340 LEDWK-SCEDRSLTLEQFEGQDCVL--ALDMARKLDLNSMARLFWHDIDGRRHYFCVAPR 396 Query: 423 FFPKSRAIEKAQEDDIP--LFEWQEEGWATLSNTETVLYDDIVKWFMEMRD--KGFKIKS 478 F+ + + + W +G ++ + Y DI++ E +D + ++ Sbjct: 397 FWVPEDTVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILE---EAKDANRLCPVQC 453 Query: 479 VHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCV 538 D + + V Q + S+ + +E + ++ N +CV Sbjct: 454 TPLDPHGATNLSHQLADEGLTPVTIVQNYTNMSDPMKELEAAITSGRFHHDGNPIMTWCV 513 Query: 539 ANV--KAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEEK 579 +NV K + DD ++ K + +ID A + A R ML ++ Sbjct: 514 SNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAVGRAMLADR 557 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 125 bits (315), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 133/582 (22%), Positives = 247/582 (42%), Gaps = 47/582 (8%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDK-----WDFKHHQFDFVIGLIEGTI 62 E +++++DV+ G A + A +R LDDL + + W F + + LIE + Sbjct: 9 EQGLKFARDVVRGKRPACRYVQLACKRHLDDLAASRKKDFRWKFDPEAAERKLALIE-LL 67 Query: 63 VHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF 122 H +GE +F+ + L+PWQKF + FG+ K T RRF E+ +PRK GK+ Sbjct: 68 PHTKGE----WAFRKQLVTLEPWQKFGLMATFGWLNKRTGKRRFRESYWEVPRKNGKSVI 123 Query: 123 AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHS 182 AA + ++D G++ Y A + KQ E F V++ + I N + Sbjct: 124 AAGVGIGMFVLDDEFGAEVYAGATTEKQAWEVFRPARLMVKRSPELIVAADIEVNASNMN 183 Query: 183 VHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKL 242 D G + + + D + + I+DE H + A Y M A R L Sbjct: 184 KPED-GSRFEPLIG-----NPGDGASPSCSIVDEYH--EHDSAALYETMLTGMGARRQPL 235 Query: 243 LMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTRE 302 + I+TAG G + + ++L GT+ D D F ++ T ++ + Sbjct: 236 MFIITTAGANIEGPCFDKRRQVIEMLEGTVPD---DELFGWIWTIDEGDDWT-------- 284 Query: 303 ITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFD 362 DP VLA P++ ++V D L ++ ++A+ + F K LN++T++ YF+ Sbjct: 285 -----DPRVLAKANPNIGISVYQDYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFN 339 Query: 363 IDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHA 422 +++++ S + S T+E+ D+++ DL + A ++ G+ + Sbjct: 340 LEDWK-SCEDRSLTLEQFEGQDCVL--ALDMARKLDLNSMARLFWHDIDGRRHYFCVAPR 396 Query: 423 FFPKSRAIEKAQEDDIP--LFEWQEEGWATLSNTETVLYDDIVKWFMEMRD--KGFKIKS 478 F+ + + + W +G ++ + Y DI++ E +D + ++ Sbjct: 397 FWVPEETVRNTENRRMAERYQAWVNQGCLLETDGAEIDYRDILE---EAKDANRLCPVQC 453 Query: 479 VHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCV 538 D ++ + V Q + S+ + +E ++ N +CV Sbjct: 454 TPLDPHGATNLSHQLEDEGLTPVTIVQNYTNMSDPMKELEAAITAGRFHHDGNPIMTWCV 513 Query: 539 ANV--KAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLE 577 +NV K + DD ++ K + +ID A + A R MLE Sbjct: 514 SNVIGKNLPGNDDVVRPIKQGNDNKIDGAVALIMAIGRAMLE 555 >gi|17922|lcl|protein:vir:4452 Length: 577 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:96 # MgeName: ST64B # Cross-refs: genbank:acc:NP_700375;genbank:gi:23505447;genbank:GeneID :955654 Length = 577 Score = 122 bits (305), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 135/586 (23%), Positives = 245/586 (41%), Gaps = 42/586 (7%) Query: 6 NFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHV 65 N A Q++++V+ G A QA QR +DD+ ++K ++FD + + + Sbjct: 8 NVNAANQYARNVVRGKITACQYVIQACQRHIDDMAAEKSKRFRYRFDKDMAEKAAKFIQL 67 Query: 66 QGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAAS 125 K +FK + L+PWQ F+ FG+ +KGT +RRF E +PRK GK+A +A Sbjct: 68 LPHTKGEWAFKRMLITLEPWQLFIVCCAFGWVQKGTKLRRFREVYTEIPRKNGKSAISAG 127 Query: 126 LTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + D G++ Y A + KQ E F ++ V+ I N + Sbjct: 128 VALYCFTCDNEFGAEVYSGATTEKQAWEVFRPARLMCKRTPLLVEAFGIEVNASNLNRPE 187 Query: 186 DFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMG 245 D G + + + D + + I+DE H + Y M A R L+ Sbjct: 188 D-GARFEPLIG-----NPGDGASPHCAIVDEYH--EHPTDALYTTMLTGMGARRQPLMWA 239 Query: 246 ISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITT 305 I+TAG G + + ++L+G++ + + F + T ++ + Sbjct: 240 ITTAGYNIEGPCYDKRREVIEMLNGSVPN---NELFGVIYTVDEGDDWT----------- 285 Query: 306 IDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDE 365 DP+VL P++ V+V D L+++ ++A+ + F K LN++ + A+F++ Sbjct: 286 --DPKVLEKANPNIGVSVYRDFLLSQQQRAINNARHAGVFKTKHLNVWVAARTAFFNLVS 343 Query: 366 FRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFF- 424 ++ + + + T+E P DL++ D+ + A E GK+ + F+ Sbjct: 344 WQ-NCEDKTLTLELFEGQPCVL--AFDLARKLDMNSMARLFTREIDGKTHFYSVAPRFWV 400 Query: 425 PKSRAIEKAQEDDIPLFE----WQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVH 480 P + +D E W E G+ T+++ V Y ++ +E K+ V Sbjct: 401 PYDTVYSVEKNEDRRTAERFQKWVEMGFLTVTDGAEVDY----RYILEEAKAANKLNPVS 456 Query: 481 FDK--KFGREFFMM-MKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYC 537 FG + + V Q + S+ + +E ++ ++ N +C Sbjct: 457 ESPIDPFGATGLSHDLADENLNPVTIIQNYTNMSDPMKELEAAIESGRFHHDGNPIMTWC 516 Query: 538 VANV--KAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEEKE 580 + NV K I DD ++ K +ID A + A R ML EKE Sbjct: 517 IGNVVGKTIPGNDDVVKPIKEQAENKIDGAVALIMAVGRAMLYEKE 562 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 121 bits (304), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 130/542 (23%), Positives = 234/542 (43%), Gaps = 52/542 (9%) Query: 45 DFKHHQFDFVIGLIEGTIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFF---EKGT 101 D + DFV I HV+G M L+ W+ FV N++G++ EKG Sbjct: 49 DRANEMLDFVQSFIR----HVKG------PLAGQLMELELWEMFVFANMYGWYHKNEKGK 98 Query: 102 NIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYN 161 +R E+ + +P+K GKT AA + G+ Y A+ +Q Q + + Sbjct: 99 TVRVIRESYVQVPKKNGKTIIAAGALLYAMYGELELGADCYCAASDYEQAQNAAEPIAQA 158 Query: 162 VEKIRNDVKKMRIRDNNQ--------EHSVHVDFGDGYCDIFAIANQDDK-LDSLNGNAL 212 +E + +I +S++ G Y + F + ++ K L+ N + Sbjct: 159 IENSEPLARHTQIYKGVNGTVSGAMYRYSIN---GIAYQNKFKVLTKNTKGLEGKNPYFV 215 Query: 213 ILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTI 272 + DE+H+ + Y +K++Q + +++ ISTAG A+ + RV K++ Sbjct: 216 LNDELHA--QENMDMYDNLKSAQISREQPMMLNISTAGKGASS-VGMRVYKYAKLVLEND 272 Query: 273 KDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSLDVTVTLDDLITEA 332 D DS F+ + ++ +D +V V P++ V+VT++ L E Sbjct: 273 DD---DSLFVAIWEPNKN-------------YDWEDRKVWKMVNPNIGVSVTMEQLEIEF 316 Query: 333 RQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQHSWTMEELSKLPITWYGGAD 392 ++A KAEFL+K LN+F N D YF+ D+ QH + Y G D Sbjct: 317 KKAKQSAHSKAEFLSKHLNVFVNGADNYFEHDQV-----QHVLVKDLGDLTGEICYLGLD 371 Query: 393 LSKMHDLTASAL-YGNYEYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATL 451 LSK DLT +L + +++ +G+SI V F P K +ED++P + E G+AT Sbjct: 372 LSKTTDLTCVSLNFPSHDDEGRSIIKVKQMYFLPNENIDFKEKEDNVPYTDMVERGFATF 431 Query: 452 SNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKS 511 + + + D I+++ +E D + ++ +++D ++ ++ + + Q + Sbjct: 432 CDGKMIDQDQIMEYIVECMDL-YDVQQINYDPAMSQKLIEKLENLGLECIAVNQYPNVMN 490 Query: 512 EGFRRIEFKAKNKELYYVNNMAYEYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFA 571 E K L +N + YC NV + + K ++ID F A + A Sbjct: 491 AMLDDSEILIYEKRL-ITDNPLFVYCALNVVVVTNINGMKAPSKRQSKKKIDGFVAFLCA 549 Query: 572 SR 573 + Sbjct: 550 HK 551 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 117 bits (292), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 125/575 (21%), Positives = 242/575 (42%), Gaps = 33/575 (5%) Query: 10 AIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHVQGEN 69 A Q+++DV+ G A A QR LDDL + K ++FD + ++ + Sbjct: 12 ANQFARDVVRGKVPACRWVILACQRHLDDLAASKSAAFKYKFDPAKAEKKLRLIQLLPHT 71 Query: 70 KEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWA 129 K ++K + L+PWQ F FG+ K T RRF E+ +PRK GK+ AA + A Sbjct: 72 KGEWAYKRQLVTLEPWQLFGLACTFGWVRKKTGFRRFRESYWEVPRKNGKSVIAAGVGIA 131 Query: 130 KNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGD 189 D G++ Y A + +Q E F V++ ++ + I N Q + D G Sbjct: 132 MFTADDEFGAEVYCGATTERQAWEVFRPARLMVKRSPLLIEHLGIEVNAQALNRPED-GS 190 Query: 190 GYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTA 249 + I + D + + I DE H + +Y M A R L+ I+TA Sbjct: 191 RFEPIIG-----NPGDGASPSCAIEDEYH--EHDTNAQYETMLTGMGARRQPLMFVITTA 243 Query: 250 GDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 G G + + ++L GT+ D D F ++ T ++D+ DP Sbjct: 244 GANIEGPCYDKRRQVIEMLEGTVPD---DELFGWIWTIDEDDDWT-------------DP 287 Query: 310 EVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFS 369 VLA P++ ++V + L ++ ++A+ + F K LN++T++ YF++++++ + Sbjct: 288 RVLAKANPNIGISVYQEYLESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWK-A 346 Query: 370 NKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRA 429 + S ++E+ D+++ DL + A + G+ + F+ Sbjct: 347 CEDRSLSLEQFEGQDCVL--ALDMARKLDLNSMARLFWRDIDGRRHYFCVAPRFWVPEDT 404 Query: 430 IEKAQEDDIP--LFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGR 487 + + + W G+ ++ + Y +I++ E ++ ++ D Sbjct: 405 VRNTENRRMAERYQAWVNHGFLIETDGAEIDYREILEEAKEA-NRRCPVQCTPLDPHGAT 463 Query: 488 EFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVANV--KAIE 545 + + V Q + S+ + +E ++ ++ N +C++NV K + Sbjct: 464 NLSHQLADEGLTPVTIVQNYTNMSDPMKELEAAITSRRFHHDGNPIMTWCISNVIGKNLP 523 Query: 546 KTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEEK 579 DD ++ K + +ID A + A R ML ++ Sbjct: 524 GNDDVVRPVKQGNDNKIDGAVALIMAVGRAMLADR 558 >gi|986|lcl|protein:vir:5736 Length: 577 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:122 # MgeName: PY54 # Cross-refs: genbank:acc:NP_892047;genbank:gi:33770510;interpro:IPR00 5021;uniprot:Q7Y413;genbank:GeneID:1732947 Length = 577 Score = 114 bits (284), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 142/603 (23%), Positives = 237/603 (39%), Gaps = 60/603 (9%) Query: 1 MVEVDNFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEG 60 M N A Q+++D++SG LA K A QR LDDL++ D K++ + F L E Sbjct: 1 MASYPNVNAAQQYARDILSGKILAGKYIKLACQRHLDDLKNSVND-KNYPYRFDRDLAER 59 Query: 61 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT 120 VQ K + +PWQ F+ ++FG+ K RRF E I + RK GK+ Sbjct: 60 ACCFVQLLPHSSGDLKGQKLKAEPWQLFIFSSIFGWVTKKGKKRRFKETYIRVGRKNGKS 119 Query: 121 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE 180 FAA + D + ++ Y A + Q ++ F ++ + +R R N Sbjct: 120 FFAAGIGMYMFCADGENAAEVYCGATKMAQAKKVF----TPASQMAKLLPDLRSRFNVSV 175 Query: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 + + DG + N D DS + I+DE H + Y M A Sbjct: 176 WAEKLTREDGSVFAPVVGNPGDG-DS--PSCAIIDEYH--EHPTDILYSTMTTGMGARSQ 230 Query: 241 KLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVT 300 L + I+TAG + +K+ L DK + +F E D N Sbjct: 231 PLTLIITTAGKDIESPCYDKDNEVKQCL-----DKMLPNERLFGMIYELDALDN------ 279 Query: 301 REITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAY 360 DP L P+L V+V +DL+ + A P++ + K LN++ + A+ Sbjct: 280 -----WQDPCNLIKANPNLGVSVFYEDLVEKLHLAKTVPRMTNDIKTKHLNMWVSGKTAF 334 Query: 361 FDIDEFRFSNKQHSWTMEELSKLPITWYGGA------DLSKMHDLTASALYGNYEYKGKS 414 F++D W E L ++ + G DL+ DL A E +GK Sbjct: 335 FNMDH---------WAKAEDKNLKLSNFKGEESHLGLDLAAKLDLNAGVPVFTREIEGKR 385 Query: 415 IDIVI----------THAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVL--YDDI 462 + H+ PK I K + Q G + L++T+ Y +I Sbjct: 386 HYYCVGSKFWVPEDTVHSIDPK---IAKTAKRYQKWVNMQWAGGSLLNDTDGAEADYREI 442 Query: 463 VKWFMEMRDK-GFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKA 521 + ++M ++ G +I S+ D + F+ ++ Q F S + +E Sbjct: 443 LASVIDMTERDGVRIASIPIDPTGATALSHELADNGFEPINIRQDFTNMSPPMKELEAAL 502 Query: 522 KNKELYYVNNMAYEYCVANVKA--IEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEE 578 ++ N +C++NV + +DD ++ K +ID A + A R ML Sbjct: 503 AGGRFHHDGNPILAWCISNVLGTFVPGSDDRVRPTKGDKQSKIDGATALLMAIGRAMLHG 562 Query: 579 KEQ 581 ++ Sbjct: 563 QDS 565 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 108 bits (270), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 138/592 (23%), Positives = 258/592 (43%), Gaps = 64/592 (10%) Query: 7 FETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHVQ 66 E + +++DV+ G T+A + K A +RFL+D+E D + FD Sbjct: 6 LERIVHYAQDVVDGRTIACQKHKWACERFLNDIERITEDDFPYYFD-------------- 51 Query: 67 GEN-----KEGKSFKDT-------PMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLP 114 GE + + FK P+ L +Q F+ N+FG+ K +RRF +A I L Sbjct: 52 GEELYRFYRWARMFKHNKGILAGQPIELTDFQLFIVGNIFGWKRKENGLRRFRKAYIQLA 111 Query: 115 RKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRI 174 RK K+ A + + + S+ YI +Q+ + + V+ D+ K + Sbjct: 112 RKNAKSQLLALIASYECFLS-PEQSEVYIAGWGREQSSIVYNEVLAQVQAC--DLLKGKY 168 Query: 175 RDNNQEHSVHVDFGDGYCDIFAIANQDDKL-DSLNGNALILDEIHSWKKAGAKKYILMKN 233 D+ H G I ++ + K D N + ++DE H+ ++ Y ++ + Sbjct: 169 TDSYGRIR-HKKSGSI---IQPLSKEARKTGDGKNPSLAVIDEYHT--HETSEIYDVLVS 222 Query: 234 SQKAYRNKLLMGISTAG-DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEK 292 A +N L++ I+TAG ++A+ + K + G+ + + YF+ +C ++D+ Sbjct: 223 GMVARQNPLIVIITTAGFNLASPCYTEYQYVSKVIDPGSPIEN--EEYFVMICELDKDDD 280 Query: 293 GNIINPVTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNI 352 + E + ++A+ ++ L +E + AL P+ FL K++NI Sbjct: 281 ------IKDERNWVKANPIVATYEEGMNF------LRSELQTALDVPEKMRSFLTKNMNI 328 Query: 353 FTNSMD-AYFDIDEFRFSNKQHSWTMEELSKLPIT-WYGGADLSKMHDLTASALYGNYEY 410 + + D Y +D++R + ++E L + Y G DLS DLT+ + + Sbjct: 329 WVDQKDNGYLPLDKWR------ACAIKEQIDLDVRDCYVGIDLSMRIDLTSVSGIVPMD- 381 Query: 411 KGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEM- 469 G+ V +H+F P+ EK + D +P W ++GW T++ V Y I + + Sbjct: 382 DGRFY--VWSHSFIPEDTLAEKRRTDKVPYDLWVKQGWITVTPGAVVDYQFIQAYIKRLA 439 Query: 470 RDKGFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYV 529 DK + IK + +D F M+ + + MV+ Q F SE +R + ++ + Sbjct: 440 EDKMWNIKEICYDPYNATHFAHEMEAEGYVMVEIRQGFRTLSEPTKRFRELVLSGKILHD 499 Query: 530 NNMAYEYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGMLEEKE 580 +N + + N + ++ I +K RID A + A R +L+ E Sbjct: 500 DNPVLNWAIGNAVVKQDHNENIMLDKDKSTGRIDPIAALINAMVRAILKSDE 551 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 103 bits (257), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 197/433 (45%), Gaps = 39/433 (9%) Query: 113 LPRKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFG---FLTYNVEKIRNDV 169 + RK GKT + + D +G++ +++AN +KQ + F + K+R + Sbjct: 1 MGRKNGKTTTISGVANYAVSQDGENGAEIHLLANVMKQARILFDESKAMIKASPKLRENF 60 Query: 170 KKMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYI 229 + +R +H D I A+ DKLD LN + I DEIH +K K Sbjct: 61 RPLR-------DEIHYDAT--ISKIMPQASDSDKLDGLNTHMGIFDEIHEFKDY--KLIS 109 Query: 230 LMKNSQKAYRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQ 289 ++KNS+ A LL+ I+TAG +G L V + L I+D + F +L + + Sbjct: 110 VIKNSRAARLQPLLIYITTAGYQLDGPLVNMVEAGRDTLDRIIED---ERTFYYLASLDD 166 Query: 290 DEKGNIINPVTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKS 349 D+ N + + P+L V++ L ++ E +A P + +F+ K Sbjct: 167 DDDINDSSNWIK-------------ANPNLGVSIDLAEMKEEWEKAKRTPDERGDFITKR 213 Query: 350 LNIFTNSMDAYFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYE 409 NIF N+ + F ID +++EL P T G DLS+ D TA+ + Sbjct: 214 FNIFANNDEMSF-IDYPTLQKNNDIISLDELEGRPCTI--GYDLSETEDFTAACATFALD 270 Query: 410 YKGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEM 469 GK V+TH++ PK + +E + E IP EW+E+G T+ + + Y D++ W ++M Sbjct: 271 -NGKVA--VLTHSWIPKHK-VEYSNEK-IPYIEWEEDGLLTIQDNPYIDYQDVLNWIIKM 325 Query: 470 RDKGFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYV 529 + + ++ + +D+ + +K F+ + Q S + ++ + ++ + Sbjct: 326 NEH-YVVEKITYDRANAFKLNQELKNYGFETEETRQGALTLSPALKDLKEMFLDGKIIFN 384 Query: 530 NNMAYEYCVANVK 542 NN ++ + NV+ Sbjct: 385 NNPLMKWYINNVQ 397 >gi|1289|lcl|protein:vir:105086 Length: 569 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1465 # MgeName: phiKO2 # Cross-refs: genbank:acc:YP_006582;genbank:gi:46402088;genbank:GeneID :2777952 Length = 569 Score = 102 bits (255), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 135/589 (22%), Positives = 242/589 (41%), Gaps = 46/589 (7%) Query: 1 MVEVDNFETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEG 60 M N A ++++D++ G +A + A QR DDL+ K K++ + F L E Sbjct: 1 MAAYPNVSVANKYARDIVDGKIVACRFIRLACQRHFDDLK--KSLDKNYPYKFDRDLAER 58 Query: 61 TIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKT 120 VQ + L+PWQ F+ ++FG+ K RRF EA I + RK GK+ Sbjct: 59 ACKFVQLLPHSSGELAGQKLKLEPWQSFIFCSIFGWVTKKDKKRRFREAYIRVARKNGKS 118 Query: 121 AFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQE 180 FAA + D + ++ Y A ++ Q ++ F ++ + + +R R + Sbjct: 119 FFAAGVGIYTFCADGENSAEVYCGATTMAQAKKVF----TPARQMASRLPALRSRFDISV 174 Query: 181 HSVHVDFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYR 239 + + DG +FA +A + DS + I+DE H Y M A Sbjct: 175 WTDSLTRPDG--SVFAPMAGKPGDGDS--PHCAIIDEYHEHDT--DHMYEAMTMGMGARS 228 Query: 240 NKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPV 299 L + I+TAG + +K+ + G ++ +F E D V Sbjct: 229 QPLTLIITTAGSSLESPCYDKDKEVKEAIEGITCNER-----LFGMIYELD--------V 275 Query: 300 TREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDA 359 + T DP+ L P+L+V+V DL+ A P+ F K LNI+ + A Sbjct: 276 GDDWT---DPKNLIKANPNLNVSVKYSDLVELLEVAKQVPRKVNAFKTKRLNIWVSGKSA 332 Query: 360 YFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVI 419 ++++++++ + ++ +E+ + T G DL+K D+ A E +GK I Sbjct: 333 FYNMEQWKAAEDKN-LKLEDFAN--DTCNVGLDLAKKLDMNAGIRLFTREIEGKRHYYCI 389 Query: 420 THAFFPKSRAIEKAQEDDIPLFE----WQEEGWATLSNTETVLYDDIVKWFMEMRDKGFK 475 F+ I + + + E G ++ Y +I+ ++M+ + + Sbjct: 390 KPKFWVPEDTIHTTDPKLLKTADRYQKFYEMGALEATDGAEADYREILASILDMQGEN-R 448 Query: 476 IKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYE 535 I + D ++ F +VD Q + S + +E ++ N Sbjct: 449 IDEIDIDPAGATALRHQLEDYGFTVVDIRQDYTNMSPAMKELEAALAGGRFHHDGNPILT 508 Query: 536 YCVANV--KAIEKTDDAIQFEKVMPNQRID----LFDASVFASRGMLEE 578 +C++NV K I +DD ++ K +ID LF+A +R ML E Sbjct: 509 WCISNVIGKFIPGSDDLVRPTKGDNQSKIDGATALFNA---MTRAMLNE 554 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 97.4 bits (241), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 140/589 (23%), Positives = 238/589 (40%), Gaps = 59/589 (10%) Query: 7 FETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGT-IVHV 65 E I +S ++ G A KQA +RFL+DLE + D F++ E IV Sbjct: 6 LEELIDYSNSILDGKINACKRHKQACKRFLNDLERMESD----DFEYYWDEEEAQRIVKW 61 Query: 66 QGENKEGKS-FKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAA 124 G + K + P+ L W KFV N+ + K TN RRF A I + RK K+ A Sbjct: 62 YGHCRHSKGVLEGKPIILNSWAKFVVCNIEAWKHKDTNYRRFRFAFIQVARKNQKSQLEA 121 Query: 125 SLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVH 184 + + + ++ Y + +++ Q F + + + K+ + +H Sbjct: 122 GMAGYEIGAKGYNAAEVYTLG--VERDQAKIVFEEWELMASKPLKKRFKFTQKVIKHKKS 179 Query: 185 VDFGDGYCDIFAIANQDDKL-DSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLL 243 F I ++ + K D N ++DE H+ +K Y +MK+ A LL Sbjct: 180 NSF------IKHLSKKAGKTGDGKNPQMAVIDEYHA--HPNSKMYDVMKSGMMARTEPLL 231 Query: 244 MGISTAG-DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTRE 302 + I+TAG D +L GT ++ + YF+ +C E + Sbjct: 232 VIITTAGEDYEETACYYEYLDCCSILDGTFEN---EKYFVMICELEDE------------ 276 Query: 303 ITTIDDPEVLASVTPSLDVTVTLDDLITEARQ------ALLEPQLKAEFLNKSLNIFTNS 356 DDP + + V T ++ I RQ + + EFL K+ NI+ + Sbjct: 277 ----DDPFDEKAWIKANPVLCTYEEGIESMRQNANLAKNTSNEEKRIEFLTKNCNIYVAA 332 Query: 357 MD-AYFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSI 415 + Y D+ EF + K++ T+E+ Y G DLSK DLT+ A Y +G Sbjct: 333 GEKKYVDV-EFWKACKENI-TLEKFRGHDC--YIGMDLSKSGDLTSIAFEFPYLDEGIRK 388 Query: 416 DIVITHAFFPKSRAIEKAQEDDIPLFEW--QEEGWATLSNTETVLYDDIVKWFME----- 468 + +F P EK + D++P W +E+GW L TE + W + Sbjct: 389 YALFGKSFIPAEVVKEKMKTDNVPYNIWSSKEKGW--LIKTEANEGQIVDLWAILNTIES 446 Query: 469 -MRDKGFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELY 527 +++ + V +D ++++ + V+ Q K +E K K++ Sbjct: 447 IVKEYELNVIEVSYDPHGAAMLVSELERRDYNCVECGQSCAKLNEATVNFRDLMKIKQIV 506 Query: 528 YVNNMAYEYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFA-SRGM 575 + N +CV N + + I+ K +RID + +FA +R M Sbjct: 507 HDENNLMTWCVQNAEKDTNSFGEIKISKKSRFKRIDPLASCIFAHNRAM 555 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 89.4 bits (220), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 132/573 (23%), Positives = 233/573 (40%), Gaps = 66/573 (11%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIG----LIEGTIV 63 E + +D+++G + + + A +RF+ D E + + FD I Sbjct: 6 ERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFK 65 Query: 64 HVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF- 122 HV+G + L +Q F+ N+FGF +K RRF + I L RK K+ F Sbjct: 66 HVEG------ILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFL 119 Query: 123 ---AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDN-- 177 AA T+ + RA YI + Q+ E + E ++ + + + Sbjct: 120 AIVAAFCTFLGDEKQRA-----YIAGWTRDQSSEVY-------EAVKTGISSSELLEGKW 167 Query: 178 NQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKA 237 + +S F +G + D N + I+DE H+ + Y ++ + A Sbjct: 168 KEAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLGIVDEYHA--HETDEIYDVLSSGMVA 225 Query: 238 YRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIIN 297 + L+ I+TAG + + + +L + K+ D YF+ +C E+++ Sbjct: 226 RKEPLMFIITTAGFDLSRPCYREYEYVSDILDPS-KNVENDDYFVMICELEKNDD----- 279 Query: 298 PVTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM 357 + E I ++A+ L+ + ++ + AL P+ FL K++NI+ + Sbjct: 280 -IKDESNWIKANPIVATYEEG------LEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKK 332 Query: 358 D-AYFDIDEFRFSNKQHSWTMEELSKLPIT----WYGGADLSKMHDLTASALYGNYEYKG 412 D Y D+ + W E+ L + W GG DLS DLT+ G Sbjct: 333 DNGYMDMSK---------WQKCEVDTLDFSGATLWIGG-DLSMTTDLTSVGWVG---MDD 379 Query: 413 KSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK 472 + IV H+F P++R EK D + W E+G+ TL+ E V Y + W +E K Sbjct: 380 EGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTIVESW-IENFSK 438 Query: 473 GFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNM 532 +I+ +DK ++ + F V+ PQ+ S + K K++ + + Sbjct: 439 DKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDP 498 Query: 533 AYEYCVANVKAIEKTDDA--IQFEKVMPNQRID 563 + + N A+ K DD I K + RID Sbjct: 499 VLFWALNN--AVVKMDDQENIMISKKISKNRID 529 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 89.0 bits (219), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 138/590 (23%), Positives = 237/590 (40%), Gaps = 75/590 (12%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIG----LIEGTIV 63 E + +D+++G + + + A +RF+ D E + + FD I Sbjct: 6 ERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFK 65 Query: 64 HVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF- 122 HV+G + L +Q F+ N+FGF +K RRF + I L RK K+ F Sbjct: 66 HVEG------ILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFL 119 Query: 123 ---AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDN-- 177 AA T+ + RA YI + Q+ E + E ++ + + + Sbjct: 120 AIVAAFCTFLGDEKQRA-----YIAGWTRDQSSEVY-------EAVKTGISSSELLEGKW 167 Query: 178 NQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKA 237 + +S F +G + D N + I+DE H+ + Y ++ + A Sbjct: 168 KEAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLGIVDEYHA--HETDEIYDVLSSGMVA 225 Query: 238 YRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIIN 297 + L+ I+TAG + + + +L + K+ D YF+ +C E+++ Sbjct: 226 RKEPLMFIITTAGFDLSRPCYREYEYVSDILDPS-KNVENDDYFVMICELEKNDD----- 279 Query: 298 PVTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM 357 + E I ++A+ L+ + ++ + AL P+ FL K++NI+ + Sbjct: 280 -IKDESNWIKANPIVATYEEG------LEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKK 332 Query: 358 D-AYFD--------IDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNY 408 D Y D +D F FS W GG DLS DLT+ G Sbjct: 333 DNGYMDMSKWQKCEVDTFDFSG-------------ATLWIGG-DLSMTTDLTSVGWVG-- 376 Query: 409 EYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFME 468 + IV H+F P++R EK D + W E+G+ TL+ E V Y + W +E Sbjct: 377 -MDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTIVESW-IE 434 Query: 469 MRDKGFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYY 528 K +I+ +DK ++ + F V+ PQ+ S + K K++ + Sbjct: 435 NFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKH 494 Query: 529 VNNMAYEYCVANVKAIEKTDDA--IQFEKVMPNQRIDLFDASVFA-SRGM 575 + + + N A+ K DD I K + RID A + A SR M Sbjct: 495 NGDPVLFWALNN--AVVKMDDQENIMISKKISKNRIDPAAAVLNAFSRAM 542 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 154/364 (42%), Gaps = 35/364 (9%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLE---SDKWD--FKHHQFDFVIGLIEGTI 62 + A Q++ DV+ G +A A QRFL+DL+ D W F + D + ++ + Sbjct: 5 DIARQYASDVVGGAIVACRYVALACQRFLNDLDRQSDDDWPYVFDEAKADRAVKFMQ-LM 63 Query: 63 VHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF 122 H +G+ KS + +PWQ F+ N+FG+ ++ T RRF EA +PRK GK+A Sbjct: 64 PHTKGKWSASKS----KLVFEPWQVFIEANIFGWVKRDTGKRRFREAYEEIPRKNGKSAR 119 Query: 123 AASLTWAKNIVDRASGSKTYIVANSLKQTQESFG---FLTYNVEKIRNDVKKMRIRDNNQ 179 A+ D SG++ Y A + KQ E F + + +E +RN + + N + Sbjct: 120 LAARGIYLFAADGESGAEVYSGATTEKQAFEVFRPAWMMAHKLENLRNRF-GIELSGNQK 178 Query: 180 EHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYR 239 D I N D + +A ++DE H M+ A Sbjct: 179 NPGPMFVMEDMSKFETVIGNPG---DGASPHAALVDEYHEHDTDALVD--TMQTGMGARE 233 Query: 240 NKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPV 299 LL I+TAG G ++ + ++L G D ++ F + T ++D+ Sbjct: 234 QPLLSIITTAGSNLGGPCHEKRRDVIRILEGQTID---ETIFGIIYTIDEDDP------- 283 Query: 300 TREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDA 359 DDP L P+ V+V D L+ + +QA + F K LN + + Sbjct: 284 ------WDDPASLIKANPNYGVSVFPDFLLAQLQQAKRSASKQNAFRTKHLNQWVGARTV 337 Query: 360 YFDI 363 + ++ Sbjct: 338 WMNM 341 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 88.2 bits (217), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 133/577 (23%), Positives = 231/577 (40%), Gaps = 74/577 (12%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIG----LIEGTIV 63 E + +D+++G + + + A +RF+ D E + + FD I Sbjct: 6 ERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFK 65 Query: 64 HVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF- 122 HV+G + L +Q F+ N+FGF +K RRF + I L RK K+ F Sbjct: 66 HVEG------ILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFL 119 Query: 123 ---AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDN-- 177 AA T+ + RA YI + Q+ E + E ++ + + + Sbjct: 120 AIVAAFCTFLGDEKQRA-----YIAGWTRDQSSEVY-------EAVKTGISSSELLEGKW 167 Query: 178 NQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKA 237 + +S F +G + D N + I+DE H+ + Y ++ + A Sbjct: 168 KEAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLGIVDEYHA--HETDEIYDVLSSGMVA 225 Query: 238 YRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIIN 297 + L+ I+TAG + + + +L + K+ D YF+ +C E+++ Sbjct: 226 RKEPLMFIITTAGFDLSRPCYREYEYVSDILDPS-KNVENDDYFVMICELEKNDD----- 279 Query: 298 PVTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM 357 + E I ++A+ L+ + ++ + AL P+ FL K++NI+ + Sbjct: 280 -IKDESNWIKANPIVATYEEG------LEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKK 332 Query: 358 D-AYFD--------IDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNY 408 D Y D +D F FS W GG DLS DLT+ G Sbjct: 333 DNGYMDMSKWQKCEVDTFDFSG-------------ATLWIGG-DLSMTTDLTSVGWVG-- 376 Query: 409 EYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFME 468 + IV H+F P++R EK D + W E+G+ TL+ E V Y + W +E Sbjct: 377 -MDDEGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTIVESW-IE 434 Query: 469 MRDKGFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYY 528 K +I+ +DK ++ + F V+ PQ+ S + K K++ + Sbjct: 435 NFSKDKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKH 494 Query: 529 VNNMAYEYCVANVKAIEKTDDA--IQFEKVMPNQRID 563 + + + N A+ K DD I K + RID Sbjct: 495 NGDPVLFWALNN--AVVKMDDQENIMISKKISKNRID 529 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 87.0 bits (214), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 131/573 (22%), Positives = 232/573 (40%), Gaps = 66/573 (11%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIG----LIEGTIV 63 E + +D+++G + + + A +RF+ D E + + FD I Sbjct: 6 ERVFAYCEDILNGKINSCKKHRWAIERFIRDYEECQSEDSPFYFDGEIAEDFYWFAKEFK 65 Query: 64 HVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF- 122 HV+G + L +Q F+ N+FGF +K RRF + I L RK K+ F Sbjct: 66 HVEG------ILAGESVELTDFQLFLAANIFGFKKKINGARRFRKVFIQLARKNAKSQFL 119 Query: 123 ---AASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDN-- 177 AA T+ + RA YI + Q+ E + E ++ + + + Sbjct: 120 AIVAAFCTFLGDEKQRA-----YIAGWTRDQSSEVY-------EAVKTGISSSELLEGKW 167 Query: 178 NQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKA 237 + +S F +G + D N + I+DE H+ + Y ++ + A Sbjct: 168 KEAYSTIEIFKNGSVVVPLSKEARKTGDGKNPSLGIVDEYHA--HETDEIYDVLSSGMVA 225 Query: 238 YRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIIN 297 + L+ I+TAG + + + +L + K+ D YF+ +C E+++ Sbjct: 226 RKEPLMFIITTAGFDLSRPCYREYEYVSDILDPS-KNVENDDYFVMICELEKNDD----- 279 Query: 298 PVTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM 357 + E I ++A+ L+ + ++ + AL P+ FL K++NI+ + Sbjct: 280 -IKDESNWIKANPIVATYEEG------LEGIRSDLKVALDRPEKMRAFLTKNMNIWVDKK 332 Query: 358 D-AYFDIDEFRFSNKQHSWTMEELSKLPIT----WYGGADLSKMHDLTASALYGNYEYKG 412 D Y D+ + W E+ + W GG DLS DLT+ G Sbjct: 333 DNGYMDMSK---------WQKCEVDTXDFSGATLWIGG-DLSMTTDLTSVGWVG---MDD 379 Query: 413 KSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK 472 + IV H+F P++R EK D + W E+G+ TL+ E V Y + W +E K Sbjct: 380 EGDFIVGQHSFMPEARLKEKMAIDKVRYDLWAEQGYLTLTPGEMVDYTIVESW-IENFSK 438 Query: 473 GFKIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNM 532 +I+ +DK ++ + F V+ PQ+ S + K K++ + + Sbjct: 439 DKEIQEFDYDKWNALHLAQNLENKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDP 498 Query: 533 AYEYCVANVKAIEKTDDA--IQFEKVMPNQRID 563 + + N A+ K DD I K + RID Sbjct: 499 VLFWALNN--AVVKMDDQENIMISKKISKNRID 529 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 87.0 bits (214), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 110/440 (25%), Positives = 193/440 (43%), Gaps = 56/440 (12%) Query: 31 AAQRFLDDLESDKWDFKHHQFDF--VIGLIEGT--IVHVQGENKEGKSFKDTPMYLQPWQ 86 A +RF D++ D + FD V+ E + HV+G P+ L +Q Sbjct: 19 AVERFFKDVDRLAEDDCPYYFDAEAVVDFYEWSRQFNHVEG------ILAGQPIELTDFQ 72 Query: 87 KFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVAN 146 F+ N++GF++K RRF +A I L RK K+ F A L + I + +I Sbjct: 73 LFIAANIYGFYKKENGARRFRKAYIQLARKNAKSQFLA-LIASYEIFPTQEKHRVFIAGW 131 Query: 147 SLKQTQESFGFLTYNVEKIRND--VKKMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDKL 204 S +Q+ E + + +E++ + +K N + + I ++ + KL Sbjct: 132 SREQSDEVYQAI---LEQLHHAPILKGKYTSANGRVKKYKTN-----SIIQPLSREARKL 183 Query: 205 -DSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQRVTT 263 D N + I+DE H+ + + + Y ++ + A R+ L+ I+TAG + Sbjct: 184 GDGKNPSLGIVDEYHAHETS--EIYDVLDSGMVARRSPLMAVITTAGFNMERPCFKEYQY 241 Query: 264 LKKVLSGTIKDKAYDSYFIFLCTAE-QDEKGNIINPVTREITTIDDPEVLASVTPSLDVT 322 K+L I D D YF+ +C + +D+ + N + PE + S+ +L V Sbjct: 242 TSKILDPDI-DTENDDYFVMICELDPEDDIKDESNWIKANPIVATYPEGMESLRSALKV- 299 Query: 323 VTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMD-AYFDIDEFRFSNKQHSWTMEELS 381 AL P+ FL K++N + + D Y + ++R + + + +L Sbjct: 300 ------------ALEVPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACSGE----IPDLQ 343 Query: 382 KLPITWYGGADLSKMHDLTAS---ALYGNYEYKGKSIDIVITHAFFPKSRAIEKAQEDDI 438 LP+ Y G DLS DLT+ A+ + Y G+ H+F P +RA EK D + Sbjct: 344 GLPV--YLGLDLSMTTDLTSVGYVAVQDGFFYVGQ-------HSFMPDARANEKMATDKV 394 Query: 439 PLFEWQEEGWATLSNTETVL 458 P W+E G+ T ++ E ++ Sbjct: 395 PYDLWREMGFITYTSGEELI 414 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 87.0 bits (214), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 123/569 (21%), Positives = 249/569 (43%), Gaps = 60/569 (10%) Query: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDK----WDFKHHQFDFVIGLIEGTIVHVQG 67 +++K V+SG LA+++ Q +R L +E+ WD +H + I +E Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWD--NHLSNKAIKFVEML------ 58 Query: 68 ENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 + K+ + PM L +QKF+ +L+G+ + R F +A I + RKQGK+ + ++ Sbjct: 59 --PDPKT--NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 Query: 128 WAKNIVDRAS--GSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + + + + Y+ +++ KQ Q F + V +R+ K +R + + ++ + Sbjct: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIED 172 Query: 186 DFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 +FA ++N D +D + ILDE+ S + Y K +N L + Sbjct: 173 VLSSS---VFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKNPLTL 227 Query: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 +STAGD N + Q +K++L+ ++ D+YF++ + E+ V E Sbjct: 228 LVSTAGDNLNSQMYQEYKYIKRILNEEVR---ADNYFVYCAEMDSQEE------VQDETK 278 Query: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDI 363 I +L S + L ++ + + L + + L K+ N++ D+ DI Sbjct: 279 WIKAMPLLESKEHRKTI---LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDI 335 Query: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHA 422 ++ +Q M ++ + Y G DLS++ DLT+ ++ N + K + +H+ Sbjct: 336 SDW----EQVITPMPNINGKDV--YIGVDLSRLDDLTSVGFIFPNDDKKV----FLHSHS 385 Query: 423 FFPKSRAIEKAQEDDIPLFEWQ-EEGWATLSNTETVLYD-----DIVKWFMEMRDKGFKI 476 F +E+ + D +E E G A + +++ + D D + F+ D + Sbjct: 386 FIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDSKQVIDFIVKFITTHD--LNV 443 Query: 477 KSVHFDKKFGREFFMMMKKQKF--KMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 ++V +D + F ++ +++ Q F S+ + ++ + + +NM Sbjct: 444 QAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLL 503 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRID 563 V N I +D ++ K M Q+ID Sbjct: 504 TTSVNNAVLIRDGEDNVKINKKMNRQKID 532 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 87.0 bits (214), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 119/569 (20%), Positives = 249/569 (43%), Gaps = 60/569 (10%) Query: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDK----WDFKHHQFDFVIGLIEGTIVHVQG 67 +++K V+SG LA+++ Q +R L +E+ WD +H + I +E Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWD--NHLSNKAIKFVEML------ 58 Query: 68 ENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 + K+ + PM L +QKF+ +L+G+ + R F +A I + RKQGK+ + ++ Sbjct: 59 --PDPKT--NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 Query: 128 WAKNIVDRAS--GSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + + + + Y+ +++ KQ Q F + V +R+ K +R + + ++ + Sbjct: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIED 172 Query: 186 DFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 +FA ++N D +D + ILDE+ S + Y K +N L + Sbjct: 173 VLSSS---VFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKNPLTL 227 Query: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 +STAGD N + Q +K++L+ ++ D+YF++ + E+ + + Sbjct: 228 LVSTAGDNLNSQMYQEYKYIKRILNEEVR---ADNYFVYCAEMDSQEEVQDETKWIKAMP 284 Query: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDI 363 ++ E ++ L ++ + + L + + L K+ N++ D+ DI Sbjct: 285 LLESKEHRKTI---------LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDI 335 Query: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHA 422 ++ +Q M ++ + Y G DLS++ DLT+ ++ N + K + +H+ Sbjct: 336 SDW----EQVITPMPNINGKDV--YIGVDLSRLDDLTSVGFIFPNDDKKV----FLHSHS 385 Query: 423 FFPKSRAIEKAQEDDIPLFEWQ-EEGWATLSNTETVLYD-----DIVKWFMEMRDKGFKI 476 F +E+ + D +E E G A + +++ + D D + F+ D + Sbjct: 386 FIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHD--LNV 443 Query: 477 KSVHFDKKFGREFFMMMKKQKF--KMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 ++V +D + F ++ +++ Q F S+ + ++ + + +NM Sbjct: 444 QAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLL 503 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRID 563 V N I +D ++ K M Q+ID Sbjct: 504 TTSVNNAVLIRDGEDNVKINKKMNRQKID 532 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 87.0 bits (214), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 119/569 (20%), Positives = 249/569 (43%), Gaps = 60/569 (10%) Query: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDK----WDFKHHQFDFVIGLIEGTIVHVQG 67 +++K V+SG LA+++ Q +R L +E+ WD +H + I +E Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWD--NHLSNKAIKFVEML------ 58 Query: 68 ENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 + K+ + PM L +QKF+ +L+G+ + R F +A I + RKQGK+ + ++ Sbjct: 59 --PDPKT--NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 Query: 128 WAKNIVDRAS--GSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + + + + Y+ +++ KQ Q F + V +R+ K +R + + ++ + Sbjct: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIED 172 Query: 186 DFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 +FA ++N D +D + ILDE+ S + Y K +N L + Sbjct: 173 VLSSS---VFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKNPLTL 227 Query: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 +STAGD N + Q +K++L+ ++ D+YF++ + E+ + + Sbjct: 228 LVSTAGDNLNSQMYQEYKYIKRILNEEVR---ADNYFVYCAEMDSQEEVQDETKWIKAMP 284 Query: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDI 363 ++ E ++ L ++ + + L + + L K+ N++ D+ DI Sbjct: 285 LLESKEHRKTI---------LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDI 335 Query: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHA 422 ++ +Q M ++ + Y G DLS++ DLT+ ++ N + K + +H+ Sbjct: 336 SDW----EQVITPMPNINGKDV--YIGVDLSRLDDLTSVGFIFPNDDKKV----FLHSHS 385 Query: 423 FFPKSRAIEKAQEDDIPLFEWQ-EEGWATLSNTETVLYD-----DIVKWFMEMRDKGFKI 476 F +E+ + D +E E G A + +++ + D D + F+ D + Sbjct: 386 FIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHD--LNV 443 Query: 477 KSVHFDKKFGREFFMMMKKQKF--KMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 ++V +D + F ++ +++ Q F S+ + ++ + + +NM Sbjct: 444 QAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLL 503 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRID 563 V N I +D ++ K M Q+ID Sbjct: 504 TTSVNNAVLIRDGEDNVKINKKMNRQKID 532 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 87.0 bits (214), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 119/569 (20%), Positives = 249/569 (43%), Gaps = 60/569 (10%) Query: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDK----WDFKHHQFDFVIGLIEGTIVHVQG 67 +++K V+SG LA+++ Q +R L +E+ WD +H + I +E Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWD--NHLSNKAIKFVEML------ 58 Query: 68 ENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 + K+ + PM L +QKF+ +L+G+ + R F +A I + RKQGK+ + ++ Sbjct: 59 --PDPKT--NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 Query: 128 WAKNIVDRAS--GSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + + + + Y+ +++ KQ Q F + V +R+ K +R + + ++ + Sbjct: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIED 172 Query: 186 DFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 +FA ++N D +D + ILDE+ S + Y K +N L + Sbjct: 173 VLSSS---VFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKNPLTL 227 Query: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 +STAGD N + Q +K++L+ ++ D+YF++ + E+ + + Sbjct: 228 LVSTAGDNLNSQMYQEYKYIKRILNEEVR---ADNYFVYCAEMDSQEEVQDETKWIKAMP 284 Query: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDI 363 ++ E ++ L ++ + + L + + L K+ N++ D+ DI Sbjct: 285 LLESKEHRKTI---------LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDI 335 Query: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHA 422 ++ +Q M ++ + Y G DLS++ DLT+ ++ N + K + +H+ Sbjct: 336 SDW----EQVITPMPNINGKDV--YIGVDLSRLDDLTSVGFIFPNDDKKV----FLHSHS 385 Query: 423 FFPKSRAIEKAQEDDIPLFEWQ-EEGWATLSNTETVLYD-----DIVKWFMEMRDKGFKI 476 F +E+ + D +E E G A + +++ + D D + F+ D + Sbjct: 386 FIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHD--LNV 443 Query: 477 KSVHFDKKFGREFFMMMKKQKF--KMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 ++V +D + F ++ +++ Q F S+ + ++ + + +NM Sbjct: 444 QAVCYDPWNAQSFITTIESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLL 503 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRID 563 V N I +D ++ K M Q+ID Sbjct: 504 TTSVNNAVLIRDGEDNVKINKKMNRQKID 532 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 86.3 bits (212), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 119/569 (20%), Positives = 249/569 (43%), Gaps = 60/569 (10%) Query: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDK----WDFKHHQFDFVIGLIEGTIVHVQG 67 +++K V+SG LA+++ Q +R L +E+ WD +H + I +E Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWD--NHLSNKAIKFVEML------ 58 Query: 68 ENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 + K+ + PM L +QKF+ +L+G+ + R F +A I + RKQGK+ + ++ Sbjct: 59 --PDPKT--NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 Query: 128 WAKNIVDRAS--GSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + + + + Y+ +++ KQ Q F + V +R+ K +R + + ++ + Sbjct: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIED 172 Query: 186 DFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 +FA ++N D +D + ILDE+ S + Y K +N L + Sbjct: 173 VLSSS---VFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKNPLTL 227 Query: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 +STAGD N + Q +K++L+ ++ D+YF++ + E+ + + Sbjct: 228 LVSTAGDNLNSQMYQEYKYIKRILNEEVR---ADNYFVYCAEMDSQEEVQDETKWIKAMP 284 Query: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDI 363 ++ E ++ L ++ + + L + + L K+ N++ D+ DI Sbjct: 285 LLESKEHRKTI---------LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDI 335 Query: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHA 422 ++ +Q M ++ + Y G DLS++ DLT+ ++ N + K + +H+ Sbjct: 336 SDW----EQVITPMPNINGKDV--YIGVDLSRLDDLTSVGFIFPNDDKKV----FLHSHS 385 Query: 423 FFPKSRAIEKAQEDDIPLFEWQ-EEGWATLSNTETVLYD-----DIVKWFMEMRDKGFKI 476 F +E+ + D +E E G A + +++ + D D + F+ D + Sbjct: 386 FIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHD--LNV 443 Query: 477 KSVHFDKKFGREFFMMMKKQKF--KMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 ++V +D + F ++ +++ Q F S+ + ++ + + +NM Sbjct: 444 QAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLL 503 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRID 563 V N I +D ++ K M Q+ID Sbjct: 504 TTSVNNAVLIRDGEDNVKINKKMNRQKID 532 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 86.3 bits (212), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 119/569 (20%), Positives = 249/569 (43%), Gaps = 60/569 (10%) Query: 12 QWSKDVISGNTLANIEQKQAAQRFLDDLESDK----WDFKHHQFDFVIGLIEGTIVHVQG 67 +++K V+SG LA+++ Q +R L +E+ WD +H + I +E Sbjct: 7 KYAKKVVSGEILASLKNIQVCKRHLSFMENPPNGCHWD--NHLSNKAIKFVEML------ 58 Query: 68 ENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 + K+ + PM L +QKF+ +L+G+ + R F +A I + RKQGK+ + ++ Sbjct: 59 --PDPKT--NQPMPLMEFQKFIVGSLYGW--RRGQYRMFTKAYISMARKQGKSLIVSGMS 112 Query: 128 WAKNIVDRAS--GSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 + + + + Y+ +++ KQ Q F + V +R+ K +R + + ++ + Sbjct: 113 VNELLFGQYPKFNRQIYVASSTYKQAQTIFKMASQQVNLMRSKSKFIREKTDVRKTDIED 172 Query: 186 DFGDGYCDIFA-IANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 +FA ++N D +D + ILDE+ S + Y K +N L + Sbjct: 173 VLSSS---VFAPLSNNPDAVDGKDPTVAILDELASM--PDDEMYSRFKTGMTLQKNPLTL 227 Query: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 +STAGD N + Q +K++L+ ++ D+YF++ + E+ + + Sbjct: 228 LVSTAGDNLNSQMYQEYKYIKRILNEEVR---ADNYFVYCAEMDSQEEVQDETKWIKAMP 284 Query: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDI 363 ++ E ++ L ++ + + L + + L K+ N++ D+ DI Sbjct: 285 LLESKEHRKTI---------LQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDI 335 Query: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHA 422 ++ +Q M ++ + Y G DLS++ DLT+ ++ N + K + +H+ Sbjct: 336 SDW----EQVITPMPNINGKDV--YIGVDLSRLDDLTSVGFIFPNDDKKV----FLHSHS 385 Query: 423 FFPKSRAIEKAQEDDIPLFEWQ-EEGWATLSNTETVLYD-----DIVKWFMEMRDKGFKI 476 F +E+ + D +E E G A + +++ + D D + F+ D + Sbjct: 386 FIGLRTNLEQKSKRDKINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHD--LNV 443 Query: 477 KSVHFDKKFGREFFMMMKKQKF--KMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 ++V +D + F ++ +++ Q F S+ + ++ + + +NM Sbjct: 444 QAVCYDPWNAQSFITTIESMALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLL 503 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRID 563 V N I +D ++ K M Q+ID Sbjct: 504 TTSVNNAVLIRDGEDNVKINKKMNRQKID 532 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 84.7 bits (208), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 133/592 (22%), Positives = 243/592 (41%), Gaps = 91/592 (15%) Query: 30 QAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHVQGENKE----GKSFKDTPMYLQPW 85 + Q ++DD E + F + D V + I + E KE K+ K+ +++ W Sbjct: 3 EYVQNYIDDFEKGRVIFNQERKDLVAYIYREIIPRI--EKKEIFFDEKNIKNCINFIEKW 60 Query: 86 -------QKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 QKF+ +F + + TN + + LI + R GK + + ++ G Sbjct: 61 FFKLENFQKFIISFVFLRYSE-TNRNVYKKILIMMGRGGGKNGLISGII--AYLISPFHG 117 Query: 139 SKTY---IVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIF 195 K Y +VANS Q + SF + YN + +K++ ++ S+H + F Sbjct: 118 IKNYNVSLVANSEDQAKTSFDEI-YNTVESNPKLKEIYYNTKSEIKSIHTN----SVMRF 172 Query: 196 AIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANG 255 +N + K D L ++ DEIH ++ K + K+ +N I T G + G Sbjct: 173 RTSNGNTK-DGLRDGMVVFDEIHQYE--SNKDVRVHKSGLGKVKNAREFYIGTDGYVREG 229 Query: 256 FLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASV 315 F+ KKVLSG + ++S F F+C +++ + +DD E Sbjct: 230 FIDSMKDKAKKVLSGAAR---WNSMFPFICKIDEEHE-------------VDDKEKWQKA 273 Query: 316 TPSL-----DVTVTLDDLITEARQALLE-PQLKAEFLNKSLNIFTNSMDAYFDIDEFRFS 369 P D L D++ E + ++E P + EF+ K ++ D++ S Sbjct: 274 NPMFHQPMSDYAQELFDMVCEQYEEMIEDPSNREEFMTKRMDF------PVMDVERSVAS 327 Query: 370 NKQHSWTMEELSKL-PITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAF----- 423 +++ T EL + GG D + + D A L +K + + ++H+F Sbjct: 328 HEELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLL----FKDRDDYVWLSHSFVRKEF 383 Query: 424 ------FPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRD-KGFKI 476 + K + + P+ +W++EG T+ + ++ IV WF++MRD +G+ + Sbjct: 384 VDTYYGYSKRKDSINGKRQFAPIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDL 443 Query: 477 KSVHFDK--------KFGREFFMMMKKQKF--------KMVDAPQQFWKKSEGFRRIEFK 520 + + D F RE F ++ K F ++V P+ S RIE Sbjct: 444 QRIVSDNFRMEILKPLFEREGFEVLSKNTFSAPPGYQIEIVRNPRAI--DSLLAPRIETA 501 Query: 521 AKNKELYYVNNMAYEYCVANVKAIEKTDDAIQFEKVMPNQR-IDLFDASVFA 571 N + + +N + NV K+D +++ K +R D F A +A Sbjct: 502 FANHRVVFGHNDMMRWYTHNVLRRLKSDGNVEYVKKEDTRRKTDGFKAFEYA 553 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 82.4 bits (202), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 114/503 (22%), Positives = 210/503 (41%), Gaps = 70/503 (13%) Query: 32 AQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHVQGENK--EGKSFKDTPMYLQPW---- 85 Q ++DD E + F + D V + + + + + K+ K+ +++ W Sbjct: 5 VQDYIDDFEKGRVIFNQERQDLVAYIYREIVPRIDKKEIFFDEKNIKNCINFIEKWFFKL 64 Query: 86 ---QKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTY 142 QKF+ +F + + TN + + LI + R GK + + ++ G K Y Sbjct: 65 ENFQKFIISFVFLRYSE-TNRNVYKKILIMMGRGGGKNGLISGII--AYLLSPFHGIKNY 121 Query: 143 ---IVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIAN 199 +VANS Q + SF + YN + +K++ ++ S+H + F +N Sbjct: 122 NVSLVANSEDQAKTSFDEI-YNTVESNPKLKEIYYNTKSEIKSIHTN----SVMRFRTSN 176 Query: 200 QDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQ 259 + K D L ++ DEIH ++ K + K+ +N I T G + GF+ Sbjct: 177 GNTK-DGLRDGMVVFDEIHQYE--SNKDVRVHKSGLGKVKNAREFYIGTDGYVREGFIDS 233 Query: 260 RVTTLKKVLSGTIKDKAYDSYFIFLCTAEQD------EKGNIINPVTREITTIDDPEVLA 313 KKVLSG + ++S F F+C +++ EK NP+ E Sbjct: 234 MKDKAKKVLSGNAR---WNSMFPFICKIDEEHEVDDKEKWQKANPMFHE----------- 279 Query: 314 SVTPSLDVTVTLDDLITEARQALLE-PQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQ 372 P D L D++ E + ++E P + EF+ K ++ D++ S+++ Sbjct: 280 ---PMSDYAQELFDMVCEQYEEMVEDPSNREEFMTKRMDF------PVMDVERSVASHEE 330 Query: 373 HSWTMEELSKL-PITWYGGADLSKMHDLTASALY----GNYEYKGKSI---DIVITHAFF 424 T EL + GG D + + D A L +Y + S + V T+ + Sbjct: 331 LVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLFKNGADYVWLSHSFVRKEFVDTYYGY 390 Query: 425 PKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRD-KGFKIKSVHFDK 483 K + + P+ +W++EG T+ + ++ IV WF++MRD +G+ ++ + D Sbjct: 391 SKRKDSINGKRQFAPIKKWEQEGLLTVIDEASINPQYIVDWFVKMRDEEGYDLQRIVSDN 450 Query: 484 --------KFGREFFMMMKKQKF 498 F RE F ++ K F Sbjct: 451 FRMEILKPLFEREGFEVLSKNTF 473 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 80.1 bits (196), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 137/584 (23%), Positives = 244/584 (41%), Gaps = 78/584 (13%) Query: 15 KDVISGNTLANIEQKQAAQRFLDDLESDKWDFKHHQFDFVIGLIEGTIVHVQGENKEGKS 74 K V+ G + + A +R +DL+ W + H+ + ++ + + E K GK Sbjct: 6 KRVLDGRLITSKAVNLAVKRHQEDLKRTDWRW-HYDPNLAGKAVK--FMEILPEPKSGK- 61 Query: 75 FKDTPMYLQPWQKFVCVNLFGFFEKG-TNIRRFNEALIFLPRKQGKTAFAASLTWAKNIV 133 P L P+QKF+ +++G+ +K +NIRRF + I + RK GK+ + + + + Sbjct: 62 ----PQPLAPFQKFIIGSIYGWVDKDDSNIRRFTDVFISMARKNGKSLLISGVILYEFLF 117 Query: 134 DRASGSK--TYIVANSLKQTQESFGFLTYNVEKI-RNDVKKMRIRDNNQEHSVHVDFGDG 190 + +K Y AN KQ FG + + + R D R+ ++ V++D G Sbjct: 118 GKNPANKRQLYTAANDRKQAGIVFGMVKDRLRALMRKDPGIKRMVKITRDELVNLDDG-- 175 Query: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 I + + +D + ++DE + K + + + Q + L ISTAG Sbjct: 176 -STIRSFSRDTGLVDGYEPHVAVVDEYANAKTTDMIE--TLASGQVLLPSYLTFIISTAG 232 Query: 251 -DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 D+ Q KKVLSG ++KA + YF F+ AEQD + +DDP Sbjct: 233 FDMNVPMFQQNYPYAKKVLSG--EEKA-ERYFAFI--AEQD-----------NVQEVDDP 276 Query: 310 EVLASVTPSLDV----TVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM-DAYFDID 364 P LDV + D L T+ QA + L A+ + K+ NI+ + D+Y D D Sbjct: 277 NSWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLV-KNFNIWRQATEDSYLDFD 335 Query: 365 EFRFSNKQHSWTMEELSKLP-----ITWYGGADLSKMHDLTASALY----GNYEYKGKSI 415 +W EL+ P W G D+ + DL A + G + G Sbjct: 336 ---------AWKAAELTDKPDIRGQRAWI-GIDVGRTSDLFAISWLIPQEGWWWLDG--- 382 Query: 416 DIVITHAFFPKSRAIE-KAQEDDIPLFEWQEEGWATLSNTETVLYDD--IVKW---FMEM 469 +AF I+ K + D I ++ G +S+ E+ + D+ + +W F+E Sbjct: 383 -----YAFVASKGGIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIER 437 Query: 470 RDKGFKIKSVHFDK-KFGREFFMMMKKQ-KFKMVDAPQQFWKKSEGFRRIEFKAKNKELY 527 D ++ + +D +FG + K ++ MV Q S ++ + Sbjct: 438 ND--IDVQGIMYDPYQFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIK 495 Query: 528 YVNNMAYEYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFA 571 + +N + N + ++ ++ K +ID+ DA++ A Sbjct: 496 HSDNRIMQAAAMNA-VLMSDNNGVRINKNKYANKIDMIDATLDA 538 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 99/417 (23%), Positives = 164/417 (39%), Gaps = 62/417 (14%) Query: 82 LQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKT 141 +Q +QKF+ +F +E T F+E I + R GK + ++L + G Sbjct: 63 IQDFQKFITCFVF-LYEADTLTPYFSEFFISMARGGGKNGYISTL--GAFFLTPLHGIPK 119 Query: 142 Y---IVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNN---------QEHSVHVDFGD 189 Y +VANS KQ Q SF + +E ND+ + + NN + S+ F Sbjct: 120 YNMSVVANSEKQAQVSFQEIYDMIES--NDLYVRKDKPNNPFNISKVLIEGISMKAQF-- 175 Query: 190 GYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTA 249 +F +N+ K D + DEIH+++K + A+ +G T Sbjct: 176 ----VFDTSNEKTK-DGAREGCVFFDEIHAYEKDTIINVKRSGLGKVAHPRTFYIG--TD 228 Query: 250 GDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 G + GFL + VL G + D F F+C + E+ + D Sbjct: 229 GHVREGFLDKLKERAANVLIG---ESPEDRLFPFICKIDDKEE-------------LHDF 272 Query: 310 EVLASVTPSLDVTVT--LDDLITEARQALLE----PQLKAEFLNKSLNIF-TNSMDAYFD 362 ++ P + + L E +Q L P + EF+ K +N+ T+S Sbjct: 273 DMWQKANPMFEAPMNDYGRQLFQEVKQQYLSLKFNPSGRTEFMTKRMNLPETDSQSVVAP 332 Query: 363 IDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHA 422 D+ +N+ M L GG D + + D A L +K I TH+ Sbjct: 333 WDDILATNRD----MPSLDNHECI--GGLDYASLKDFAAVGLL----FKVDDEYIWKTHS 382 Query: 423 FFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKSV 479 F +A + P+ EW E+G T+ + T+ I+ WF+E + K + +K V Sbjct: 383 F--ARKAFLDEYQLKPPIHEWAEKGLLTIVDEPTISPKHIIDWFLEAQ-KHYGLKKV 436 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 60.1 bits (144), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 92/404 (22%), Positives = 161/404 (39%), Gaps = 53/404 (13%) Query: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTY- 142 P+Q+F+ N+F +K T+ F E IF+ R GK ++++ + G K Y Sbjct: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAIS--DFLSTPLHGVKEYH 121 Query: 143 --IVANSLKQTQESFGFL-TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIAN 199 IVANS Q + SF + T ++ RN K + ++ + +N Sbjct: 122 ISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSN 181 Query: 200 QDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQ 259 K D +I DEIH + G + + + +N+ IST G + G++ Sbjct: 182 TKTK-DGGREGCVIFDEIHYF--FGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDA 238 Query: 260 RVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSL 319 + VLSG +K+ F F C + ++ +DD + P L Sbjct: 239 MKHKIASVLSGKVKNS---RLFAFYCKLDDPKE-------------VDDRQTWEKANPML 282 Query: 320 -----DVTVTLDDLITEARQAL-LEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQH 373 + TL I E L K EF+ K +N+ D+++ K+ Sbjct: 283 HKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNL------PEVDLEKVIAPWKEI 336 Query: 374 SWTMEELSKLP-ITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAIEK 432 T E+ L GG D + + D + L ++ I + H+F + + Sbjct: 337 LATNREIPNLDNQMCIGGLDFANIRDFASVGLL----FRKNDDYIWLGHSF------VRQ 386 Query: 433 AQEDDI----PLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK 472 DD+ P+ EW++ G T+ + + + + IV WF++ R+K Sbjct: 387 GFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREK 430 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 60.1 bits (144), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 127/566 (22%), Positives = 241/566 (42%), Gaps = 74/566 (13%) Query: 30 QAAQRFLDDLES-DKWDFKHHQFDFVIGLIEGTI--VHVQGENKEGKSFKDTPMYLQPWQ 86 +A R L+DL+ D DFK F ++ I + + + K GK P L +Q Sbjct: 38 KACLRHLNDLKRIDDEDFK---FVYLPEKAADPINFIEILPDVKTGK-----PYPLAMFQ 89 Query: 87 KFVCVNLFGFFEKGTN-IRRFNEALIFLPRKQGKTAFAASLTWAKNIV--DRASGSKTYI 143 KF+ NL+G+ +K + +RRF +A+I + RK GKT A + + + + + + + Sbjct: 90 KFIIGNLYGWRKKTDHSLRRFRKAMISVARKNGKTILIAGILLYEFLFGHNPSMSRQLFC 149 Query: 144 VANSLKQTQESFGFLTYNVEKIRN---DVKKMRIRDNNQEHSVHVDFGDGYCDIFAIANQ 200 AN Q + ++ + +R DV+K ++ ++H + Y I A++ Sbjct: 150 TANDRTQAKIAWDMAKKQLSSLRAKDVDVRKATKIVRDELKNLH---DESY--IRALSRD 204 Query: 201 DDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG-DIANGFLAQ 259 +D +LDE + K + L+++ Q N ++ ISTAG D+ Sbjct: 205 TGAVDGFEPYVGVLDEFAASKTNEMLE--LLESGQGQLDNPFILIISTAGMDLNVPMHTI 262 Query: 260 RVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSL 319 + K+L G I D+ Y Y AEQD + I D P L Sbjct: 263 EYPYITKILDGEITDEGYFGY-----VAEQDNE-----------EEIKDESNWIKSNPIL 306 Query: 320 DVTVTLD---DLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDIDEFRFSNKQHSW 375 +V D D + R+ LE + L K+ N++ +S ++Y D + SW Sbjct: 307 EVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYID---------KQSW 357 Query: 376 TMEELSKLPITW----YGGADLSKMHDLTASA---LYGNYEYKGKSIDIVITHAFFPKSR 428 + ++ K P T+ + G D+ ++ DL A + + +Y Y S V T K Sbjct: 358 ELAQIDK-PDTYKRRVWLGVDVGRVSDLFAISSVIMMDDYWYL-DSFSFVAT-----KYG 410 Query: 429 AIEKAQEDDIPLFEWQEEGWATLSNTETVLYDD--IVKWFMEM-RDKGFKIKSVHFDK-K 484 K + D + + +G+ ++ E+ + DD +++ EM +++ + FD + Sbjct: 411 LTAKEKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQ 470 Query: 485 FGREFFMMMKKQ-KFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAYEYCVANVKA 543 FG M+ K+ ++ +++ Q + ++ K ++ + N V N Sbjct: 471 FGTLLTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNA-Y 529 Query: 544 IEKTDDAIQFEKVMPNQRIDLFDASV 569 I+ ++ ++ +K + +ID DA++ Sbjct: 530 IKTDNNGMRIDKNKNSNKIDPLDAAL 555 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 60.1 bits (144), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 92/404 (22%), Positives = 161/404 (39%), Gaps = 53/404 (13%) Query: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTY- 142 P+Q+F+ N+F +K T+ F E IF+ R GK ++++ + G K Y Sbjct: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAIS--DFLSTPLHGVKEYH 121 Query: 143 --IVANSLKQTQESFGFL-TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIAN 199 IVANS Q + SF + T ++ RN K + ++ + +N Sbjct: 122 ISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSN 181 Query: 200 QDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQ 259 K D +I DEIH + G + + + +N+ IST G + G++ Sbjct: 182 TKTK-DGGREGCVIFDEIHYF--FGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDA 238 Query: 260 RVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSL 319 + VLSG +K+ F F C + ++ +DD + P L Sbjct: 239 MKHKIASVLSGKVKNS---RLFAFYCKLDDPKE-------------VDDRQTWEKANPML 282 Query: 320 -----DVTVTLDDLITEARQAL-LEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQH 373 + TL I E L K EF+ K +N+ D+++ K+ Sbjct: 283 HKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNL------PEVDLEKVIAPWKEI 336 Query: 374 SWTMEELSKLP-ITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAIEK 432 T E+ L GG D + + D + L ++ I + H+F + + Sbjct: 337 LATNREIPNLDNQMCIGGLDFANIRDFASVGLL----FRKNDDYIWLGHSF------VRQ 386 Query: 433 AQEDDI----PLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK 472 DD+ P+ EW++ G T+ + + + + IV WF++ R+K Sbjct: 387 GFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREK 430 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 60.1 bits (144), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 92/404 (22%), Positives = 161/404 (39%), Gaps = 53/404 (13%) Query: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTY- 142 P+Q+F+ N+F +K T+ F E IF+ R GK ++++ + G K Y Sbjct: 65 PFQRFIIANIF-LIDKNTDEAFFTEFAIFMGRGGGKNGLISAIS--DFLSTPLHGVKEYH 121 Query: 143 --IVANSLKQTQESFGFL-TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIAN 199 IVANS Q + SF + T ++ RN K + ++ + +N Sbjct: 122 ISIVANSEDQAKTSFDEIRTVLMDNKRNKTGKTPKAPYEVSKAKIINRATKSVIRYNTSN 181 Query: 200 QDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQ 259 K D +I DEIH + G + + + +N+ IST G + G++ Sbjct: 182 TKTK-DGGREGCVIFDEIHYF--FGPEMVNVKRGGLGKKKNRRTFYISTDGFVREGYIDA 238 Query: 260 RVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSL 319 + VLSG +K+ F F C + ++ +DD + P L Sbjct: 239 MKHKIASVLSGKVKNS---RLFAFYCKLDDPKE-------------VDDRQTWEKANPML 282 Query: 320 -----DVTVTLDDLITEARQAL-LEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQH 373 + TL I E L K EF+ K +N+ D+++ K+ Sbjct: 283 HKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNL------PEVDLEKVIAPWKEI 336 Query: 374 SWTMEELSKLP-ITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAIEK 432 T E+ L GG D + + D + L ++ I + H+F + + Sbjct: 337 LATNREIPNLDNQMCIGGLDFANIRDFASVGLL----FRKNDDYIWLGHSF------VRQ 386 Query: 433 AQEDDI----PLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK 472 DD+ P+ EW++ G T+ + + + + IV WF++ R+K Sbjct: 387 GFLDDVKLEPPIKEWEKMGLLTIVDDDVIEIEYIVDWFLKAREK 430 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 56.2 bits (134), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 113/517 (21%), Positives = 217/517 (41%), Gaps = 56/517 (10%) Query: 79 PMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT-WAKNIVDRAS 137 P L PWQKF+ LFG + +RF+ A++ + R QGKT A LT ++ I Sbjct: 95 PTQLMPWQKFILCMLFG-WRNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESFGL 153 Query: 138 GSKTYIVAN-SLKQTQESFGFLTYNVEKI--RNDVKKMRIRDNNQEHSVHVDFGDGYCDI 194 ++ Y+V + KQT + G++ +++I + K + HS V + Sbjct: 154 SNQDYLVTSIKFKQTNKLLGYIKSMMKQIIQKEPFKSLANETELGLHSDQVIMKANNNIL 213 Query: 195 FAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIAN 254 AI+ + + DS + I DE+ + A I+ + Q N+ + ISTA + Sbjct: 214 RAISAESGQYDSFHFTTAIFDEMGEIETRNAVSKIV--SGQVKVPNRQFIQISTAYPNPS 271 Query: 255 GFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLAS 314 + +++ + ++ D+Y + + + E+ + PE Sbjct: 272 VPFREDQMIMQQAMEDD-DNREADTYLCLVWSQDNLEE-------------VFQPETWMK 317 Query: 315 VTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIF-TNSMDAYFDIDEFRFSNKQ- 372 P LD+ D+L+ + LL+ + ++ L+ +L+ F +M+ + D F + + Sbjct: 318 SNPLLDLEQERDNLM----KGLLDKR-DSDLLSGNLSDFQVKNMNCWLLADSNSFLDLKD 372 Query: 373 -HSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDI---VITHAFFP--K 426 + +++ Y G D S D TA Y Y G+ + H+F P + Sbjct: 373 IENAVIDDFDIKGKRVYVGLDASMFSDNTALGFV--YPYLGEDGSQKWHIEQHSFIPWQQ 430 Query: 427 SRAIE-KAQEDDIPLFEWQEEGWATLSNTETVLY--DDIVKWFME-MRDKGFKIKSVHFD 482 + +IE K ++D I + + +G+ T+++ L +++ +WF++ + D + +D Sbjct: 431 AGSIEAKIEQDGINYRDLETKGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYD 490 Query: 483 KKFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNK---ELYYVNNMAYE---- 535 MM + K +++ F R E K K L+ N+ Sbjct: 491 A--------MMVNKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRRDDEI 542 Query: 536 YCVANVKAIEKTDD-AIQFEKVMPNQRIDLFDASVFA 571 A + A+ K D+ IQ +K+ +ID+ DA + A Sbjct: 543 MRKALINAVIKEDNIGIQVDKMKSTYKIDVVDALIDA 579 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 98/409 (23%), Positives = 170/409 (41%), Gaps = 46/409 (11%) Query: 79 PMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 P L PWQKF+ L G + +RF A+I + R QGKT A L + + Sbjct: 113 PTELMPWQKFIMCMLIG-WRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGL 171 Query: 139 SKTYIVANSL--KQTQESFGFL------TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDG 190 S + +S+ KQT + FG++ +E + + + D + + V Sbjct: 172 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILND-EVVMKKM 230 Query: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 I AI+++ + DS + I DEI + +K + + Q +N + IST+ Sbjct: 231 NNKIRAISHEAGQYDSFHFTTAIFDEIG--EVTNREKISKIVSGQVLVKNHQFVQISTSY 288 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTA-EQDEKGNIINPVTREITTIDDP 309 + + TL++ + +A S LC QD +++ +P Sbjct: 289 PDPSVPFRKDQKTLQEAMEKDWDREADTS----LCLVWAQD-----------DLSETFEP 333 Query: 310 EVLASVTPSLDVT----VTLDDLITEARQALLEPQLKAEFLNKSLNI-FTNSMDAYFDID 364 E P L++ + L LI + LL+ L +F K+LN+ +D+Y ++ Sbjct: 334 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLH-DFQTKNLNMWLQQDVDSYLNLA 392 Query: 365 EFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNY-EYKGKSIDIVITHAF 423 + + + E S Y G D S M D TA A Y + +GK V H+F Sbjct: 393 DVEKA------IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSF 446 Query: 424 FPKSRAIE---KAQEDDIPLFEWQEEGWATLSNTETVLY--DDIVKWFM 467 P RA K ++D I E ++ G+ T+++ + L D++ +W + Sbjct: 447 VPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIV 495 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 54.7 bits (130), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 92/408 (22%), Positives = 174/408 (42%), Gaps = 45/408 (11%) Query: 79 PMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT-WAKNIVDRAS 137 P L WQKF+ LFG+ +RF+ A++ + R QGKT A LT ++ I Sbjct: 95 PTKLMAWQKFILCMLFGW-RNANGGKRFSRAIVSVGRGQGKTYLMAILTAYSYFIESLGL 153 Query: 138 GSKTYIVAN-SLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVD---FGDGYCD 193 ++ Y+V + + KQT + G++ +++I + + + N E +H D Sbjct: 154 SNQDYLVTSINFKQTNKLLGYIKSMMKQIIQN-EPFKSLANETELGLHSDQVIMKANNNV 212 Query: 194 IFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIA 253 + AI+ + + DS + I DEI + A I+ + Q N+ + ISTA Sbjct: 213 LRAISAESGQYDSFHFTTAIFDEIGEIETRDAVSKIV--SGQVKVPNRQFIQISTA--YP 268 Query: 254 NGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTA-EQDEKGNIINPVTREITTIDDPEVL 312 N + R ++++ ++D +LC QD + PE Sbjct: 269 NPSVPFRED--QRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFK-----------PETW 315 Query: 313 ASVTPSLDVTVTLDDL---ITEARQALLEPQLKAEFLNKSLNI-FTNSMDAYFDIDEFRF 368 A P LD+ ++L + + R + L A+F K++N +++ D+ + Sbjct: 316 AKSNPLLDLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDI-- 373 Query: 369 SNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDI---VITHAFFP 425 + + E + Y G D S D TA Y Y G+ V H+F P Sbjct: 374 ----ENAVIPEFDRRGKRVYVGLDASMFSDNTAIGFV--YPYLGEDGSQKWHVEQHSFIP 427 Query: 426 --KSRAIE-KAQEDDIPLFEWQEEGWATLSNTETVLY--DDIVKWFME 468 ++ ++E K ++D + + + +G+ T+++ L +++ +WF++ Sbjct: 428 WQQAGSLEAKMEQDGVNYRDLEAKGFCTITSHPQGLINPEEVYRWFVD 475 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 54.3 bits (129), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 128/595 (21%), Positives = 252/595 (42%), Gaps = 76/595 (12%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLES-DKWDFKHHQFDFVIGLIEGTIVHVQ 66 + A+ ++ V+ G ++ + KQA +R +DDL DK D + +D IV Sbjct: 14 DPALSYAIGVLDGTIISGEKIKQACKRHIDDLRRIDKDDAFIYIYD---SEQAKKIVEFS 70 Query: 67 GENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASL 126 K+ S + P P+QKF+ ++ G+ T RF I + R GKT A+ Sbjct: 71 TLLKDVTSGE--PFEASPYQKFILASVQGWRNPETKGMRFKTIFISMARTNGKTQVLATY 128 Query: 127 TWAKNIVDRASGSKTYIVAN-SLKQTQESFGFLTYNVEKIRNDV-----KKMRIRDNNQE 180 + ++ V++ + T F ++ +N ++++ V K + I DN+Q Sbjct: 129 ALYNFLFGSPKINRQLAVSSIDIAHTHNLFNYMRFNWIQLKDGVFKKLAKALDINDNSQV 188 Query: 181 HSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRN 240 + + ++ Q DS + I+DE H + G K+ + + N Sbjct: 189 MEIK----KQSAVMKKLSAQGSPADSDHYTTGIVDEYHLF---GQKQRDFISSMTSGMVN 241 Query: 241 KLLMG---ISTAGDIANGFLAQRVTTLKKVL-SGTIKDKAYDSYFIFLCTAEQDEKGNII 296 L ISTAG + + K+L SG D + + + +++ +I Sbjct: 242 NPLAQMFFISTAGVDPTVPMFEDYKRYSKMLESGDWSSSEKD--LVLIWEQDSEDEAYLI 299 Query: 297 N--PVTREITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFT 354 P + + I+ S+ +T + +ITE R +L +F K++N++ Sbjct: 300 ETWPKSNPLMEIE----------SMRKNLT-EGMITE-RDSLNSQGRIRDFYVKNMNLWQ 347 Query: 355 NS-MDAYFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGK 413 N+ +AY +D + + ++E + G D S+ +D T+ A + + G Sbjct: 348 NAKKNAYLPLDLVQDA------IVDEFDYFGRDVFIGFDYSQTNDDTSLAFV--FPHSGS 399 Query: 414 SIDIVITHAFFP--KSRAIE-KAQEDDIPLFEWQEEGWATLSNTETVLY--DDIVKWFME 468 + H++ P K+ +IE K Q D+I QE+G+AT++ L D++ W + Sbjct: 400 KFHLY-QHSWIPIAKAGSIEAKEQRDNIDYRAVQEKGFATITRDRFGLIDEDEVFNWMLN 458 Query: 469 MRDKG-FKIKSVHFDK-----------KFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRR 516 +K ++K++ +D+ + E+ ++ +Q K ++ P +F + S Sbjct: 459 FIEKNELRVKAILYDQWGTGNFIRRLDEVKEEYLLIPVRQGIKSLNEPTKFLQSS----- 513 Query: 517 IEFKAKNKELYYVNNMAYEYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFA 571 F N + +++ A + N + ++ I+ +K + +Q+ID DA V A Sbjct: 514 --FIKHN--ITMLDDQALIQGLVNAVTVSD-NNGIKLDKNVNSQKIDAADAIVNA 563 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 54.3 bits (129), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 98/409 (23%), Positives = 169/409 (41%), Gaps = 46/409 (11%) Query: 79 PMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 P L PWQKF+ L G + +RF A+I + R QGKT A L + + Sbjct: 116 PTELMPWQKFIMCMLIG-WRNSEGGKRFTVAIISVSRGQGKTYILAILMVYSFLFESLGL 174 Query: 139 SKTYIVANSL--KQTQESFGFL------TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDG 190 S + +S+ KQT + FG++ +E + + + D + + V Sbjct: 175 SNQDFLVSSINFKQTSKLFGYVKTMLKTVIKIEPFKTIAAETGLTDRSILND-EVVMKKM 233 Query: 191 YCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 I AI+++ + DS + I DEI + +K + + Q N + IST+ Sbjct: 234 NNKIRAISHEAGQYDSFHFTTAIFDEIG--EVTNREKISKIVSGQVMVENHQFVQISTSY 291 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTA-EQDEKGNIINPVTREITTIDDP 309 + + TL++ + +A S LC QD +++ +P Sbjct: 292 PDPSVPFRKDQKTLQEAMEKDWDREADTS----LCLVWAQD-----------DLSETFEP 336 Query: 310 EVLASVTPSLDVT----VTLDDLITEARQALLEPQLKAEFLNKSLNI-FTNSMDAYFDID 364 E P L++ + L LI + LL+ L +F K+LN+ +D+Y ++ Sbjct: 337 ETWVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLH-DFQTKNLNMWLQQDVDSYLNLA 395 Query: 365 EFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNY-EYKGKSIDIVITHAF 423 + + + E S Y G D S M D TA A Y + +GK V H+F Sbjct: 396 DVEKA------IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSF 449 Query: 424 FPKSRAIE---KAQEDDIPLFEWQEEGWATLSNTETVLY--DDIVKWFM 467 P RA K ++D I E ++ G+ T+++ + L D++ +W + Sbjct: 450 VPFQRAGSIDAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIV 498 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 53.1 bits (126), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 95/398 (23%), Positives = 168/398 (42%), Gaps = 41/398 (10%) Query: 79 PMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVD-RAS 137 P L WQKF+ L G+ K +RF+ A+I + R QGKT A L V+ R Sbjct: 105 PTKLMEWQKFMLSLLIGWRNKEGG-KRFSRAIISVGRGQGKTYMLAILMAYSFFVESRGL 163 Query: 138 GSKTYIVAN-SLKQTQESFGFL--TYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDI 194 ++ ++V++ + KQT + +G+L NV + N K + + + + + + I Sbjct: 164 SNQDFLVSSINAKQTGKLYGYLKSMINVLRTINPWKNIADKTDLSLQADKIIMRNHNNVI 223 Query: 195 FAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIAN 254 I+++ + DS + I DEI K +K + + Q N+ + ISTA Sbjct: 224 RPISHEAGQYDSYHFTTAIFDEIGEVK--SREKISKIVSGQVKVPNRQFVQISTAYPDPT 281 Query: 255 GFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLAS 314 + L++ + A D+Y + + + + PE Sbjct: 282 VPFHEDEKMLQQAMEQDFLRDA-DTYLCLIWSND-------------SLDETYKPETWVK 327 Query: 315 VTPSLDVTVTLDDLITEARQALLEPQ-------LKAEFLNKSLNIFTNSMDAYFDIDEFR 367 P LD+ D+L+ Q LL+ + +F K+LN++ +S DID + Sbjct: 328 SNPLLDLASEHDNLM----QGLLDKRDNDVLTGAVHDFQCKNLNMWLSS-----DIDSYL 378 Query: 368 FSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASA-LYGNYEYKGKSIDIVITHAFFP- 425 + E + Y G D S D TA A +Y +G++ V H+F P Sbjct: 379 NLADVEKAIVPEFNIYGQRCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPF 438 Query: 426 -KSRAIE-KAQEDDIPLFEWQEEGWATLSNTETVLYDD 461 + +IE K ++D I E + +G+ T+++ + L +D Sbjct: 439 QAAGSIEAKEKQDGINYRELETKGFCTITSHQQGLIND 476 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 118/542 (21%), Positives = 207/542 (38%), Gaps = 62/542 (11%) Query: 56 GLIEGTIVHVQGENKEGKSFKDTPMYLQPWQKFVCVN-LFGFFEK----GTNIRRFNEAL 110 E +VH +G+ K L+ WQ+ V LFG E G RR+ A Sbjct: 30 AFFEEILVHTKGQYTRKK------FILEDWQRDDIVRPLFGRVEYSDEFGCYKRRYEIAW 83 Query: 111 IFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVK 170 I L RK GKT A + + D + Y VA KQ +F V+ K Sbjct: 84 IELARKNGKTELLAGIMLYLLVADGEQSGEIYGVARDKKQAALAFDVAAQMVKFSPILSK 143 Query: 171 KMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYIL 230 ++++ D + ++ + + D+ A A+ L S N + DEI +W+ G + Sbjct: 144 RLKVVDYKKR--IYDAKTNSFYDVIA-ADAKSALGS-NPSGCGADEILAWQDGGMWDSLR 199 Query: 231 MKNSQKAYRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQD 290 A L++ +TAG+ GF + +++V+ + + F+++ Sbjct: 200 TGMGSGARVQPLMVASTTAGNDTEGFAGLKHREMERVMEDP-DNPDFKHIFVYM------ 252 Query: 291 EKGNIINPVTREITTIDDP---EVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLN 347 R +DP E P+L ++ + + +A +A P + F Sbjct: 253 ----------RNTPMEEDPWNEECWPHANPALGRFLSWEAMRKQAAEARNNPIAEMAFRQ 302 Query: 348 KSLNIFTNSMDAYFDI---DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASAL 404 LN + NS + + DE + + + + + + W+ G DL+ DL + Sbjct: 303 FKLNQWQNSTIRWMRMPAWDECKGTVFKSNKDLFDAFAGQSCWF-GLDLAARRDLCSICY 361 Query: 405 YGNYEYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLF--EWQEEGWATLSNTET----VL 458 + S+D++ H + P+S A+ K + F E+ GW ++ + V+ Sbjct: 362 L--FPQSDGSVDLLWRH-WIPES-ALAKLDRLNDGRFAKEFVPGGWLKVTEGDVLDFDVV 417 Query: 459 YDDIVKWFMEMRDKGFKIKSVHFDKKFGREFFMMMKKQKFKMVDA---PQQFWKKSEGFR 515 YDDI E K F I D+ ++K+ + D F S+ Sbjct: 418 YDDI-----EADSKRFTILGGDADQWSSDPVIQEIEKRTYLYEDIFAYKNDFAHMSDSMH 472 Query: 516 RIEFKAKNKELYYVNNMAYEYCVANVKAIEKTDDA--IQFEKV---MPNQRIDLFDASVF 570 RI K L + N +C + +A D I+ +K M +RID +V Sbjct: 473 RIFEWTLAKNLRHHGNPLARFCFSACEARVAAYDPNLIRPDKPDRDMAAKRIDAVPTAVM 532 Query: 571 AS 572 A+ Sbjct: 533 AT 534 >gi|15611|lcl|protein:vir:188 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:6 # MgeName: HK97 # Cross-refs: genbank:acc:NP_037698;genbank:gi:9634166;genbank:GeneID: 1262528 Length = 504 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 114/528 (21%), Positives = 197/528 (37%), Gaps = 73/528 (13%) Query: 70 KEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWA 129 EGK PM L P+QK + ++ GT++ A++ + RK GKT A + A Sbjct: 18 PEGK-LIGQPMRLDPFQKDFILAVYDN-PAGTDM-----AILSIARKNGKTGLIAGILLA 70 Query: 130 KNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGD 189 ++V + T IV+ +L + Q + F N KM + + VH+ Sbjct: 71 -HLVGPEAVQNTQIVSGALSREQAAIVF---------NLAVKMVNLNPKLQEIVHITPSG 120 Query: 190 G-----YCDIF--AIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKL 242 C++ A++ + L+ ILDE + + +Q A+ N L Sbjct: 121 KKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHENPL 180 Query: 243 LMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTRE 302 L+ IST A L + +K K D + + C + K Sbjct: 181 LIVISTQA-------ANDADLLSIWIDDAVKSK--DPHIV--CHVYEAPKD--------- 220 Query: 303 ITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFD 362 I E + P+L + D+ +A +A P + F N +LN +++ + Sbjct: 221 -ADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFI- 278 Query: 363 IDEFRFSNKQHSWTMEELSKLPIT----WYGGADLSKMHDLTASALYGNYEYKGKSIDIV 418 + W E ++PI WY G DLS +DLTA + G + + V Sbjct: 279 --------SRSVW--ELCGEMPINTPRKWYAGLDLSARNDLTALVIAGEAD---DGVWDV 325 Query: 419 ITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKS 478 + P+ E+ + D P W EG + +V Y +V E+ F + S Sbjct: 326 FPFFWTPQKTLEERTKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIGD-FDLTS 384 Query: 479 VHFDK----KFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 + FD+ +F ++ + +V+ Q F +E N + + + Sbjct: 385 MAFDRWRIDQFRKDADAI--GLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVL 442 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDA---SVFASRGMLEEK 579 C N ++ + +K RID A SV A+ G + E+ Sbjct: 443 TMCAVNAVVVKDAAGNRKLDKSKATGRIDGMVAMTMSVGAANGEVTEQ 490 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 97/429 (22%), Positives = 182/429 (42%), Gaps = 41/429 (9%) Query: 77 DTPMYLQP--WQKFVCVNLFGF--FEKGTNIRRFNEALIFLPRKQGKTAFAASL-TWAKN 131 DT +QP WQ F+ +L G+ + GT RF + I + R+QGKT A+ L + Sbjct: 97 DTSKKIQPFKWQSFILDSLIGWRTVDNGT---RFTTSNISIARQQGKTWLASILINFYYF 153 Query: 132 IVDRASGSKTYIVAN-SLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSV-----HV 185 +V + S+ +VA+ + + F ++ + I + D+ +E V V Sbjct: 154 VVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTI---LSLPEFADDARERGVEAQTTQV 210 Query: 186 DFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMG 245 + I +Q DS + + DEI + + A + + + Q +N++ + Sbjct: 211 IAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFVK 270 Query: 246 ISTA-GDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREIT 304 ISTA DI F T + ++D +F QD + + P T + Sbjct: 271 ISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADN----VFQVIYSQDSEDEVFEPETWAKS 326 Query: 305 TIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM-DAYFDI 363 + E+ S +L + D E R+ LE F+NKSLN+++ ++Y + Sbjct: 327 NPNLLELPKSKRDNLQNALNQDRNDNE-REGTLE-----TFVNKSLNLWSRRFQNSYLSL 380 Query: 364 DEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAF 423 D + S ++ + G D S+ +D T+ Y K + V H+F Sbjct: 381 DNIQRS------IIDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHSF 434 Query: 424 FP--KSRAIE-KAQEDDIPLFEWQEEGWATLSN--TETVLYDDIVKWFME-MRDKGFKIK 477 P +++ IE K+++D + + Q+EG+ ++N + + D + +W ++ + K+K Sbjct: 435 IPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVK 494 Query: 478 SVHFDKKFG 486 + D G Sbjct: 495 FIIADPNHG 503 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 50.4 bits (119), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 95/430 (22%), Positives = 186/430 (43%), Gaps = 43/430 (10%) Query: 77 DTPMYLQP--WQKFVCVNLFGF--FEKGTNIRRFNEALIFLPRKQGKTAFAASL-TWAKN 131 DT +QP WQ F+ +L G+ + GT RF + I + R+QGKT A+ L + Sbjct: 96 DTSKKIQPFKWQSFILDSLIGWRTIDNGT---RFTTSNISIARQQGKTWLASILINFYYF 152 Query: 132 IVDRASGSKTYIVAN-SLKQTQESFGFLTYNVEKI------RNDVKKMRIRDNNQEHSVH 184 +V + S+ +VA+ + + F ++ + I +D ++ + + + Sbjct: 153 VVCWNATSQDLLVASYDSEHATKLFNDVSLQAKTILSLPDFADDARERGV----EAQTTQ 208 Query: 185 VDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 V + I +Q DS + + DEI + + A + + + Q +N++ + Sbjct: 209 VIAKNTKNTIRKGTSQGGGFDSFHNAIAVYDEIGNLRPALNETLKQITSGQNGIKNRMFV 268 Query: 245 GISTA-GDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREI 303 ISTA DI F T + ++D +F QD + + P T Sbjct: 269 KISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADN----VFQVIYAQDSEDEVFEPETWAK 324 Query: 304 TTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSM-DAYFD 362 + + E+ S +L + D E R+ LE F+NKSLN+++ ++Y Sbjct: 325 SNPNLLELQKSKRDNLQKALNQDRNDNE-REGTLE-----TFVNKSLNLWSRRFQNSYLS 378 Query: 363 IDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHA 422 +D + S H +++ + + G D S+ +D T+ Y K + V H+ Sbjct: 379 LDNIQRSIIDHF----DVNGRDV--FIGFDGSQTNDNTSFGFIYPYTDHDKHMFHVQQHS 432 Query: 423 FFP--KSRAIE-KAQEDDIPLFEWQEEGWATLSN--TETVLYDDIVKWFME-MRDKGFKI 476 F P +++ IE K+++D + + Q+EG+ ++N + + + + +W ++ + K+ Sbjct: 433 FIPFAQAKTIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTEQVYQWLVDYVNQHRLKV 492 Query: 477 KSVHFDKKFG 486 K + D G Sbjct: 493 KFIIADPNHG 502 >gi|16408|lcl|protein:vir:1883 Length: 504 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:41 # MgeName: HK022 # Cross-refs: genbank:acc:NP_037663;genbank:gi:9634121;genbank:GeneID: 1262500 Length = 504 Score = 49.3 bits (116), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 113/528 (21%), Positives = 196/528 (37%), Gaps = 73/528 (13%) Query: 70 KEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWA 129 EGK PM L +QK + ++ GT++ A++ + RK GKT A + A Sbjct: 18 PEGK-LIGQPMRLDTFQKEFILAVYDN-PAGTDM-----AILSIARKNGKTGLIAGILLA 70 Query: 130 KNIVDRASGSKTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGD 189 ++V + T IV+ +L + Q + F N KM + + VH+ Sbjct: 71 -HLVGPEAVQNTQIVSGALSREQAAIVF---------NLAVKMVNLNPKLQEIVHITPSG 120 Query: 190 G-----YCDIF--AIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKL 242 C++ A++ + L+ ILDE + + +Q A+ N L Sbjct: 121 KKLIGLPCNVEYKALSAEGKTTHGLSPILAILDETGQVRGPQDDFIDAITTAQGAHENPL 180 Query: 243 LMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTRE 302 L+ IST A L + +K K D + + C + K Sbjct: 181 LIVISTQA-------ANDADLLSIWIDDAVKSK--DPHIV--CHVYEAPKD--------- 220 Query: 303 ITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFD 362 I E + P+L + D+ +A +A P + F N +LN +++ + Sbjct: 221 -ADISKRESWLAANPALGTFRSEKDMARQAEKAGRMPSFENTFRNLNLNQRVSTVSPFI- 278 Query: 363 IDEFRFSNKQHSWTMEELSKLPIT----WYGGADLSKMHDLTASALYGNYEYKGKSIDIV 418 + W E ++PI WY G DLS +DLTA + G + + V Sbjct: 279 --------SRSVW--ELCGEMPINTPRKWYAGLDLSARNDLTALVIAGEAD---DGVWDV 325 Query: 419 ITHAFFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDKGFKIKS 478 + P+ E+ + D P W EG + +V Y +V E+ F + S Sbjct: 326 FPFFWTPQKTLEERTKTDRAPYDVWVREGLLRTTPGASVDYSFVVADIAEIIGD-FDLTS 384 Query: 479 VHFDK----KFGREFFMMMKKQKFKMVDAPQQFWKKSEGFRRIEFKAKNKELYYVNNMAY 534 + FD+ +F ++ + +V+ Q F +E N + + + Sbjct: 385 IAFDRWRIDQFRKDADAI--GLSLPLVEFGQGFKDMGPAVDTLESLMLNGRVRHGMHPVL 442 Query: 535 EYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDA---SVFASRGMLEEK 579 C N ++ + +K RID A SV A+ G + E+ Sbjct: 443 TMCAVNAVVVKDAAGNRKLDKSKATGRIDGMVAMTMSVGAANGEVTEQ 490 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 46.6 bits (109), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 63/268 (23%), Positives = 109/268 (40%), Gaps = 34/268 (12%) Query: 74 SFKDTPMYLQPWQKFVCVNLFGFFEK--GTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 SF P L PWQ+ + ++ + + G R+ ++ + RK GK+ AA++ Sbjct: 44 SFAGQPFRLLPWQRTLLIDAYELTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHL 103 Query: 132 IVDRASGSKTYI-VANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDG 190 I DR + I AN Q + F + +++ N K+ N Q + + D Sbjct: 104 IADRGDAQRQVIAAANDRNQARMVFD----SAKQMVNASPKLAAVCNVQRDVIR--YKD- 156 Query: 191 YCDIFAIANQD-DKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTA 249 + + + + D + LN A+ LDE +++ K+ + + + A + + ISTA Sbjct: 157 --NTYRVVSADAGRQQGLNPAAVSLDE-YAFSKS-SDLFDALTLGSAARNQPMFLIISTA 212 Query: 250 GDIANGFLAQRVTTLKKVLSGTIKDKA--YDSYFIFLCTAEQDEKGNIINPVTREITTID 307 G +G A ++V SG D Y S+ P E Sbjct: 213 GPDPDGPFAALCEQGERVNSGEADDPTLFYRSW----------------GPKLGETVDHL 256 Query: 308 DPEVLASVTPSLDVTVTLDDLITEARQA 335 DPEV A PS D+ + DD A+++ Sbjct: 257 DPEVWARCNPSYDI-LNPDDFKAAAQRS 283 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 12/162 (7%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKHH-QFDFVIGLIEGTIVHV 65 + A ++ V++G LA + K A+ R L DL + DF +H D L+ + Sbjct: 29 DPATLYAFSVLNGTKLAGYKIKLASFRHLMDLRRQGQPDFPYHYDVDEANRLLRFAKICP 88 Query: 66 QGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAAS 125 + E P L WQ+F +FG+ +K N +RF + + R QGKT A Sbjct: 89 NVDTGE-------PTKLMEWQEFTFALMFGWRDKDNN-KRFTRVIDSVARGQGKTYQMAI 140 Query: 126 LTWAKNIVDRASGS-KTYIVAN-SLKQTQESFGFLTYNVEKI 165 L +++ S + Y+VA+ + KQT + FG++ + KI Sbjct: 141 LVCYSFLIESVGLSNQDYLVASINFKQTMKLFGYVASMMRKI 182 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 43.5 bits (101), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 92/397 (23%), Positives = 156/397 (39%), Gaps = 49/397 (12%) Query: 82 LQPWQKFVCVNLFGFFE---KGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 L P+QKF+ +F FE G FN+ I+ R GK + + + + G Sbjct: 69 LFPFQKFIYAFVFAVFEIDEDGDKQLMFNDYFIYAGRGFGKNGLLSCMIF--ECTTKNHG 126 Query: 139 SKTY---IVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDN--NQEHSVHVDFGDGYCD 193 Y IVA S Q + SF + YN+ + D K R N +H +G Sbjct: 127 VDHYNIDIVATSEDQAKTSFEDI-YNMLEENKDTMKNVYRWNLVAIQHR-----KNGSTI 180 Query: 194 IFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIA 253 + +N K S G A+ DE H+++ Y + + ++T G + Sbjct: 181 KYKTSNARTKDGSRPG-AVAFDEEHAYEDYS--NYAVHTSGLGKKERSRRFHLTTDGYVR 237 Query: 254 NGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQ-DEKGNIINPVTREITTIDDPEVL 312 L R ++VL+G +K F F+C + DE N + +P +L Sbjct: 238 GSVLDDRKVLAQQVLNG---EKPNSKMFPFICKLDSPDEVQN------KTKWAKANPMIL 288 Query: 313 ASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFT-NSMDAYFDIDEFRFSNK 371 +++ DD A ++ EF+ K +N T + D+ + +N+ Sbjct: 289 YYKPLRIEIDQHWDD-------AQSSSEIMVEFMTKRMNCPTQDPTTVAVKWDDIKATNQ 341 Query: 372 QHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAIE 431 M L P GG D + + D A L ++ +GK I H F + ++ Sbjct: 342 ----PMPSLKMAPAI--GGIDFADVRDFCAVGLL--FKKEGKYI---FKHHTFICAESL- 389 Query: 432 KAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFME 468 K + P+ E E+G AT+ + + D ++WF+E Sbjct: 390 KITKFKFPIHEAVEKGLATIIHDNYIDEDYPLQWFLE 426 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 42.7 bits (99), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 88/421 (20%), Positives = 170/421 (40%), Gaps = 67/421 (15%) Query: 82 LQPWQKFVCVNLFGFF---EKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 L P QK+ + G+ EKG + NE + L R GK++ A+ I+ G Sbjct: 66 LHPTQKYWYELMLGYDMVDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 139 SKTYIVANSLKQTQESFGFLTYNVEKIRNDVK---KMRIRDNN---QEHSVHVDFGDGYC 192 ++ ++A Q + F +++RN + +R+ + N + ++F + Sbjct: 126 GESLVIAYDNTQARHVF-------DQVRNQTEASDTLRVYNENKIFKSTKQGLEF-TAFK 177 Query: 193 DIFAIANQDDKLDSLNGNAL--ILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 F +D L + GN+ I DE+H++ + + + K S++ N + I++ G Sbjct: 178 TTFK-KQTNDTLRAQGGNSSLNIFDEVHTYGEDITES--VNKGSRQKQDNWQSIYITSGG 234 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAY-DSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 +G + V K +++ Y D F L E E+ + D Sbjct: 235 LKRDGLYDKLVERFKS------EEEFYNDRSFGLLYMLENHEQ-------------VKDK 275 Query: 310 EVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFD-----ID 364 + P + +I E A +P L+ +FL ++ + YF + Sbjct: 276 KNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLT 335 Query: 365 EFRFS--NKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHA 422 EF S NK + Y G DLS + DLTA + E +GK+ +T + Sbjct: 336 EFNLSVFNKNRT-------------YVGIDLSLIGDLTAVSFVC--ELEGKTYSHTLTFS 380 Query: 423 FFPKSRAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK-GFKIKSVHF 481 + ++ Q++ E+ + G L +TE + +D++ + + R K G +++ + + Sbjct: 381 VRSQYEQLDTEQQE--LWTEFVDRGELILLDTEYINVNDLIPYINDFRSKTGCRLRKIGY 438 Query: 482 D 482 D Sbjct: 439 D 439 >gi|11068|lcl|protein:vir:78311 Length: 547 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1850 # MgeName: B025 # Cross-refs: genbank:acc:YP_001468641;genbank:gi:157325219;genbank:Ge neID:5601657 Length = 547 Score = 42.4 bits (98), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/402 (21%), Positives = 156/402 (38%), Gaps = 53/402 (13%) Query: 82 LQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKT 141 L W+KF+ +F +F++ + + E I L R GK F ++L+ + G Sbjct: 63 LDNWEKFIAPFIFLYFKEDDELF-YEEFFITLGRGGGKNGFISTLS--NYFISPLHGINN 119 Query: 142 Y---IVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVD------FGDGYC 192 Y +VANS Q + SF +++ N + D N + D G Sbjct: 120 YDVSVVANSEDQAKVSF-------KEVFNTI------DGNPKLEGSFDAWKAQIIGKATN 166 Query: 193 DIFAIANQDDKL-DSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGD 251 +F + K D +I DE H ++ + A + +G T G Sbjct: 167 SVFKFQTSNAKTKDGGREGCVIYDETHEYEDRQIIDVFSGGLGKVANPREFFIG--TNGF 224 Query: 252 IANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPEV 311 + GF + K +LSG + D F F+C + D+ + N E +P Sbjct: 225 VRAGFYDKLEERSKAILSG---ENLNDRMFPFIC--KLDDPAEVKNEAMWEKA---NPAF 276 Query: 312 LASVTPSLDVTVTLDDLITEARQALLE-PQLKAEFLNKSLNIFTNSMDAYFDI-DEFRFS 369 ++P + L + + + +AL P + F+ K +N+ ++ ++ + Sbjct: 277 EKPLSPR---SKRLLNKVRKQYEALTNNPSGREAFMTKRMNLPEVDLEKVVAPWEDILAT 333 Query: 370 NKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRA 429 N++ M EL G D + + D A L ++ I TH+F + Sbjct: 334 NRE----MPELQNRACI--GAFDYASVKDFAAVGLL----FRVGDDYIWKTHSF--ARKG 381 Query: 430 IEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRD 471 P+ EW+++G T+ + T+ +V WF+EMR+ Sbjct: 382 YLDIANLKPPIKEWEKQGLLTIVDEPTIDPRHVVNWFVEMRE 423 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 42.4 bits (98), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 44/273 (16%) Query: 74 SFKDTPMYLQPWQKFVCVNLFGFFEK--GTNIRRFNEALIFLPRKQGKTAFAASLTWAKN 131 SF P L PWQ+ + ++ + + G R+ ++ + RK GK+ AA++ Sbjct: 41 SFAGQPFRLLPWQRELLIDAYVLTQDTFGRWRRKHRTVVVCVARKNGKSTIAAAIMLYHL 100 Query: 132 IVDRASGSKTYIVA----NSLKQTQESFGFLTYNVEKIRN--DVKKMRIR-DNNQEHSVH 184 I DR + I A N + +S + K+ DV++ IR +N V Sbjct: 101 IADRGDAQRQIIAAANDRNQARMVFDSAKQMVNASPKLAAVCDVQRDVIRYKDNTYRVVS 160 Query: 185 VDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLM 244 D G + LN A+ LDE K + + + ++ A + + Sbjct: 161 ADAG--------------RQQGLNPAAVSLDEYAFSKHSDLFDALTLGSA--ARNQPMFL 204 Query: 245 GISTAGDIANGFLAQRVTTLKKVLSGTIKDKA--YDSYFIFLCTAEQDEKGNIINPVTRE 302 ISTAG +G A ++V SG D Y S+ P E Sbjct: 205 IISTAGPDPDGPFAALCEQGERVNSGEADDPTLFYRSW----------------GPKLGE 248 Query: 303 ITTIDDPEVLASVTPSLDVTVTLDDLITEARQA 335 DP+V + PS D+ + DD A+++ Sbjct: 249 TVDHLDPDVWRACNPSYDI-LNPDDFKAAAQRS 280 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 39.7 bits (91), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 84/414 (20%), Positives = 170/414 (41%), Gaps = 53/414 (12%) Query: 82 LQPWQKFVCVNLFGFF---EKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 L P QK+ + G+ EKG + NE + L R GK++ A+ I+ G Sbjct: 66 LHPVQKWWYELMLGYDMVDEKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 139 SKTYIVANSLKQTQESFGFLTYNVEKIRNDVK---KMRIRDNN---QEHSVHVDFGDGYC 192 ++ ++A Q + F +++RN + +R+ + N + ++F + Sbjct: 126 GESLVIAYDNTQARHVF-------DQVRNQTEASDTLRVYNENKIFKSTKQGLEF-TSFK 177 Query: 193 DIFAIANQDDKLDSLNGNAL--ILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 F +D L + GN+ I DE+H++ + + + K S++ N + I++ G Sbjct: 178 TTFK-KQTNDTLRAQGGNSSLNIFDEVHTYGEDITES--VNKGSRQKQDNWQSIYITSGG 234 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAY-DSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 +G + V K +++ Y D F L E E+ + D Sbjct: 235 LKRDGLYDKLVERFKS------EEEFYNDRSFGLLYMLENHEQ-------------VKDK 275 Query: 310 EVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFS 369 + P + +I E A +P L+ +FL ++ + YF + + + Sbjct: 276 KNWTMALPLIGDVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLT 335 Query: 370 NKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRA 429 + S + + Y G DLS + DLTA + E +GK+ +T + + Sbjct: 336 DFNLSVFNKNRT------YVGIDLSLIGDLTAVSFVC--ELEGKTYSHTLTFSVRSQYEQ 387 Query: 430 IEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK-GFKIKSVHFD 482 ++ Q++ E+ + G L +TE + +D++ + + R K G +++ + +D Sbjct: 388 LDTEQQE--LWTEFVDRGELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYD 439 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 39.3 bits (90), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 83/414 (20%), Positives = 170/414 (41%), Gaps = 53/414 (12%) Query: 82 LQPWQKFVCVNLFGFF---EKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 L P Q++ + G+ EKG + NE + L R GK++ A+ I+ G Sbjct: 66 LLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 139 SKTYIVANSLKQTQESFGFLTYNVEKIRNDVK---KMRIRDNN---QEHSVHVDFGDGYC 192 ++ ++A Q + F +++RN + +R+ + N + ++F + Sbjct: 126 GESLVIAYDNTQARHVF-------DQVRNQTEASDTLRVYNENKIFKSTKQGLEF-TSFK 177 Query: 193 DIFAIANQDDKLDSLNGNAL--ILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 F +D L + GN+ I DE+H++ + + + K S++ N + I++ G Sbjct: 178 TTFK-KQTNDTLRAQGGNSSLNIFDEVHTYGEDITES--VNKGSRQKQDNWQSIYITSGG 234 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAY-DSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 +G + V K +++ Y D F L E E+ + D Sbjct: 235 LKRDGLYDKLVERFKS------EEEFYNDRSFGLLYMLENHEQ-------------VKDK 275 Query: 310 EVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFS 369 + P + +I E A +P L+ +FL ++ + YF + + + Sbjct: 276 KNWTMALPLIGSVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLT 335 Query: 370 NKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRA 429 + S + + Y G DLS + DLTA + E +GK+ +T + + Sbjct: 336 DFNLSVFNKNRT------YVGIDLSLIGDLTAVSFVC--ELEGKTYSHTLTFSVRSQYEQ 387 Query: 430 IEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK-GFKIKSVHFD 482 ++ Q++ E+ + G L +TE + +D++ + + R K G +++ + +D Sbjct: 388 LDTEQQE--LWTEFVDRGELILLDTEYINVNDLIPYINDFRTKTGCRLRKIGYD 439 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 38.9 bits (89), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 79/395 (20%), Positives = 162/395 (41%), Gaps = 50/395 (12%) Query: 98 EKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGF 157 EKG + NE + L R GK++ A+ I+ G ++ ++A Q + F Sbjct: 85 EKGIQVNLVNEIFLNLGRGSGKSSLMATRVLNWMILGGQYGGESLVIAYDNTQARHVF-- 142 Query: 158 LTYNVEKIRNDVK---KMRIRDNN---QEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNA 211 +++RN + +R+ + N + ++F + F +D L + GN+ Sbjct: 143 -----DQVRNQTEASDTLRVYNENKIFKSTKQGLEF-TSFKTTFK-KQTNDTLRAQGGNS 195 Query: 212 L--ILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIANGFLAQRVTTLKKVLS 269 I DE+H++ + + + K S++ N + I++ G +G + V K Sbjct: 196 SLNIFDEVHTYGEDITES--VNKGSRQKQDNWQSIYITSGGLKRDGLYDKLVERFKS--- 250 Query: 270 GTIKDKAY-DSYFIFLCTAEQDEKGNIINPVTREITTIDDPEVLASVTPSLDVTVTLDDL 328 +++ Y D F L E E+ + D + P + + Sbjct: 251 ---EEEFYNDRSFGLLYMLENHEQ-------------VKDKKNWTMALPLIGDVPKWSGV 294 Query: 329 ITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFSNKQHSWTMEELSKLPITWY 388 I E A +P L+ +FL ++ + YF + + ++ S + + Y Sbjct: 295 IEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLTDFNLSVFNKNRT------Y 348 Query: 389 GGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRAIEKAQEDDIPLFEWQEEGW 448 G DLS + DLTA + E +GK+ +T + + ++ Q++ E+ + G Sbjct: 349 VGIDLSLIGDLTAVSFVC--ELEGKTYSYTLTFSVRSQYEQLDTEQQE--LWTEFVDRGE 404 Query: 449 ATLSNTETVLYDDIVKWFMEMRDK-GFKIKSVHFD 482 L +TE + +D++ + + R K G +++ + +D Sbjct: 405 LILLDTEYINVNDLIPYINDFRSKTGCRLRKIGYD 439 >gi|10061|lcl|protein:vir:99071 Length: 537 # NCBI annotation: gp26 # Family: family:all:523 # MgeID: mge:1671 # MgeName: Wildcat # Cross-refs: genbank:acc:YP_655891;genbank:gi:109521463;genbank:GeneI D:4158036 Length = 537 Score = 38.5 bits (88), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 8/106 (7%) Query: 82 LQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAF--AASLTWAKNIVDRASGS 139 L PWQ+FV N+ +G +EAL+ +PR+ GKTA A L + D+ Sbjct: 61 LDPWQEFVLRNMLNLDAQGHWA--ASEALLLVPRQNGKTAIIEARELVGLYVVCDKLC-I 117 Query: 140 KTYIVANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHV 185 T ++ N+ + ESF L +E K R R N S+ V Sbjct: 118 HTAVLFNAAR---ESFYRLKARIENNETLNKITRFRSGNDNMSIEV 160 Score = 24.3 bits (51), Expect = 4.7, Method: Compositional matrix adjust. Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 475 KIKSVHFDKKFGREFFMMMKKQKFKMVDAPQQFWK 509 K ++ H DK FGRE + F V P WK Sbjct: 285 KERNRHSDKTFGRERLGLWNDNAFNAV-IPADQWK 318 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 83/414 (20%), Positives = 169/414 (40%), Gaps = 53/414 (12%) Query: 82 LQPWQKFVCVNLFGFF---EKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASG 138 L P Q++ + G+ EKG + NE + L R GK++ A+ I+ G Sbjct: 66 LLPTQRWWYELMLGYDMIDEKGVQVNLINEIFLNLGRGSGKSSLMATRVLNWMILGGQYG 125 Query: 139 SKTYIVANSLKQTQESFGFLTYNVEKIRNDVK---KMRIRDNN---QEHSVHVDFGDGYC 192 ++ ++A Q + F +++RN + +R+ + N + ++F + Sbjct: 126 GESLVIAYDNTQARHVF-------DQVRNQTEASDTLRVYNENKIFKSTKQGLEFA-SFK 177 Query: 193 DIFAIANQDDKLDSLNGNAL--ILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAG 250 F +D L + GN+ I DE+H++ + + + K S++ N + I++ G Sbjct: 178 TTFK-KQTNDTLRAQGGNSSLNIFDEVHTYGEDITES--VNKGSRQKQDNWQSIYITSGG 234 Query: 251 DIANGFLAQRVTTLKKVLSGTIKDKAY-DSYFIFLCTAEQDEKGNIINPVTREITTIDDP 309 +G + V K +++ Y D F L E E+ + D Sbjct: 235 LKRDGLYDKLVERFKS------EEEFYNDRSFGLLYMLENHEQ-------------VKDK 275 Query: 310 EVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNIFTNSMDAYFDIDEFRFS 369 + P + +I E A +P L+ +FL ++ + YF + + + Sbjct: 276 KNWTMALPLIGSVPKWSGVIEEYELAQGDPALQNKFLAFNMGLPMQDTAYYFTPQDTKLT 335 Query: 370 NKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYKGKSIDIVITHAFFPKSRA 429 + S + + Y G DLS + DLTA + E +GK+ +T + + Sbjct: 336 DFNLSVFNKNRT------YVGIDLSLIGDLTAVSFVC--ELEGKTYSHTLTFSVRSQYEQ 387 Query: 430 IEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWFMEMRDK-GFKIKSVHFD 482 ++ Q++ E+ + G L +TE + +D++ + R K G +++ + +D Sbjct: 388 LDTEQQE--LWTEFVDRGELILLDTEYINVNDLIPHINDFRTKTGCRLRKIGYD 439 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 100/485 (20%), Positives = 198/485 (40%), Gaps = 61/485 (12%) Query: 8 ETAIQWSKDVISGNTLANIEQKQAAQRFLDDLESD-KWDFKH-------HQFDFVIGLIE 59 + ++ DV+ G +A + A R L DL+ DF + ++F + L+ Sbjct: 30 DAGTRYCFDVLDGKIVAGYNIRLACFRHLRDLQRQGNKDFPYVYSIEAFNRFLKFLSLVP 89 Query: 60 GTIVHVQGENKEGKSFKDTPMYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGK 119 N + S K PM WQ F+ +F +F+ N+ RF+ +I + R QGK Sbjct: 90 ---------NVDDLSQKLEPM---DWQLFIFSQIFAWFDLD-NVPRFSNIIISIARSQGK 136 Query: 120 TAFAA-SLTWAKNIVDRASGSKTYIVAN-SLKQTQESFGFLTYNVEKI--RNDVKKMRIR 175 T A L ++ I ++ ++V++ + QT + F ++ + +I K + Sbjct: 137 TMIAGICLNFSYLIEIIGQSNQDFLVSSLTFDQTMKLFTYVKSMMARIIENEPFKSLAEE 196 Query: 176 DNNQEHSVHVDFGDGYCDIFAIANQDDKLDSLNGNALILDEIHSWKK-AGAKKYILMKNS 234 Q +S + I I+ + K DS + + DE+ + G K + + Sbjct: 197 TQLQLYSREIKSLLDANTINTISFESGKFDSKHFKLAVADEVGELRTDEGISK---ITSG 253 Query: 235 QKAYRNKLLMGISTAGDIANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGN 294 Q + IST+ + Q L +++ D++ D + + QD Sbjct: 254 QVNTEGSRFIEISTSYQTPDVPFHQEQKKLIEIMERDF-DRSGDDQLCLIWS--QDNLEE 310 Query: 295 IINPVT--REITTIDDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNI 352 + P T + ++ PE+ + + L++E + LL +L A+F K++N Sbjct: 311 VFKPETWAKSNPLLNHPELKEGL---------MKGLLSERDKKLLMGKL-ADFQVKNMNC 360 Query: 353 -FTNSMDAYFDIDEFRFSNKQHSWTMEELSKLPITWYGGADLSKMHDLTASALYGNYEYK 411 +++ D+ + + + E Y G D S D TA Y Y Sbjct: 361 WLLADSNSFLDLTDI------ENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFV--YPYL 412 Query: 412 GKSIDI---VITHAFFP--KSRAIE-KAQEDDIPLFEWQEEGWATLSNTETVLY--DDIV 463 G+ V H+F P ++ ++E K ++D + + +E+G+ T+++ L +++ Sbjct: 413 GEDGSQKWHVEQHSFIPWQQAGSLEAKMEQDGVNYRDLEEKGYCTITSHPQGLINPEEVY 472 Query: 464 KWFME 468 +WF + Sbjct: 473 RWFCD 477 >gi|830|lcl|protein:vir:93598 Length: 553 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:157 # MgeName: phi 4795 # Cross-refs: genbank:acc:YP_001449292;genbank:gi:157166040;goa:Q6H9U9 ;interpro:IPR001453;interpro:IPR005021;uniprot:Q6H9U9;ge nbank:GeneID:5580420 Length = 553 Score = 34.3 bits (77), Expect = 0.005, Method: Compositional matrix adjust. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 85 WQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIV 144 W + LFG ++ T +R E I +P+K K+ AA + +++ + I+ Sbjct: 60 WVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIMMTALLLNWRQAAGYTIL 119 Query: 145 ANSLKQTQESF 155 A +++ +F Sbjct: 120 APTVEVAANAF 130 >gi|10890|lcl|protein:vir:78144 Length: 530 # NCBI annotation: probable terminase # Family: family:all:523 # MgeID: mge:1847 # MgeName: Min1 # Cross-refs: genbank:acc:YP_001294797;genbank:gi:149882818;genbank:Ge neID:5309172 Length = 530 Score = 32.0 bits (71), Expect = 0.018, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Query: 80 MYLQPWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLT 127 + L PWQK++ +++ G RF +AL+ + R+ GKT AA L Sbjct: 39 VCLFPWQKWLLIHMLELDAFGR--LRFRKALVIVGRQNGKTLIAAVLA 84 >gi|9232|lcl|protein:vir:97071 Length: 561 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1653 # MgeName: OP1 # Cross-refs: genbank:acc:YP_453562;genbank:gi:84662597;genbank:GeneID :5142486 Length = 561 Score = 29.6 bits (65), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 4/135 (2%) Query: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYI 143 PW +FG ++ T E + +P+K K++ A+ + I+ + I Sbjct: 60 PWILDFVRYVFGAYDADTGNNLLKELFLLVPKKSAKSSLASGIMLTALIIGWRKSASYII 119 Query: 144 VANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDK 203 ++ +++ SF + +R D + ++ + + G + +A +D Sbjct: 120 ISPTIEIAGNSF---KPAADSVRADPELSKLLQVSAHTRTITNRVTGAV-LKVLAAAEDT 175 Query: 204 LDSLNGNALILDEIH 218 + + L++DE+H Sbjct: 176 VTGSKASVLLIDELH 190 >gi|13482|lcl|protein:vir:9757 Length: 471 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:175 # MgeName: 315.3 # Cross-refs: genbank:acc:NP_795519;genbank:gi:28876285;genbank:GeneID :1257826 Length = 471 Score = 26.9 bits (58), Expect = 0.60, Method: Compositional matrix adjust. Identities = 11/42 (26%), Positives = 19/42 (45%) Query: 447 GWATLSNTETVLYDDIVKWFMEMRDKGFKIKSVHFDKKFGRE 488 GWA S E V +D+ W++ GF + + + G + Sbjct: 224 GWAEWSVPEMVKINDVSSWYISNPSMGFHLNERKIEAELGED 265 >gi|22056|lcl|protein:vir:103455 Length: 610 # NCBI annotation: terminase subunit nuclease and ATPase # Family: family:all:147 # MgeID: mge:1542 # MgeName: RB32 # Cross-refs: genbank:acc:YP_803107;genbank:gi:116326387;genbank:GeneI D:4405484 Length = 610 Score = 26.9 bits (58), Expect = 0.72, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 16/28 (57%) Query: 5 DNFETAIQWSKDVISGNTLANIEQKQAA 32 D F+ QWS I+G+TLA Q+ A Sbjct: 327 DIFDDGWQWSIQTINGSTLAQFRQEHTA 354 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 26.6 bits (57), Expect = 0.84, Method: Compositional matrix adjust. Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 24/162 (14%) Query: 192 CDIFAIANQDDKLDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGD 251 +I A+ +D LD +I+DE ++KK L+ Q +NK + IST + Sbjct: 167 TEISIYASNEDTLDGGREQLVIIDEFGAFKKNP-----LITIRQGLRKNKGTLFISTTNN 221 Query: 252 -IANGFLAQRVTTLKKVLSGTIKDKAYDSYFIFLCTAEQDEKGNIINPVTREITTIDDPE 310 I G + + K+ +KD + + + + DE + D Sbjct: 222 VIRGGAYDDELESWKE----WVKDDDFSHWVFYYALDDYDE--------------VKDSS 263 Query: 311 VLASVTPSLDVTVTLDDLITEARQALLEPQLKAEFLNKSLNI 352 P+L T++L+D+ + A+ P A+ + K N+ Sbjct: 264 KYIKANPALGYTLSLEDIQKDFIGAIGNPVKMAKIITKRFNL 305 >gi|7504|lcl|protein:vir:99915 Length: 478 # NCBI annotation: gp2 # Family: family:all:523 # MgeID: mge:1611 # MgeName: Halo # Cross-refs: genbank:acc:YP_655519;genbank:gi:109392289;genbank:GeneI D:4157084 Length = 478 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 100 GTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYIVANSLKQTQESFGFL 158 GT + + ++I +PR+ GKT + +A ++ G A+ K +E+FG + Sbjct: 54 GTGLYAADTSVISIPRQVGKTYLIGCIVFALALL--TPGLTVIWTAHRTKTAKETFGSM 110 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 466 FMEMRDKGFKIKSVHFDKKFGREFFMMMKKQKFK---MVDAPQQFWKKSEGFRRIEFKAK 522 F ++++ + + +D + F + ++ K K M Q + S+ ++ K Sbjct: 385 FDKLQELRIGLVGIGYDPAYSANFLYLFEQNKIKARLMEKVKQNAFTVSQHIMSLQRLLK 444 Query: 523 NKELYYVNNMAYEYCVANVKAIEKTDDAIQFEKVMPNQRIDLFDASVFA 571 + L Y N+ + + N + K ++ KV +IDL DA+V A Sbjct: 445 TRGLLY-NSEIMKQHLRNARVKYKDTTQVRLVKVSDQSKIDLVDAAVNA 492 >gi|27407|lcl|protein:vir:7202 Length: 610 # NCBI annotation: gp17 terminase DNA packaging enzyme, large subunit # Family: family:all:147 # MgeID: mge:142 # MgeName: T4 # Cross-refs: genbank:acc:NP_049776;genbank:gi:9632591;genbank:GeneID: 1258647 Length = 610 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 5 DNFETAIQWSKDVISGNTLANIEQKQAA 32 D F+ QWS I+G++LA Q+ A Sbjct: 327 DIFDDGWQWSIQTINGSSLAQFRQEHTA 354 >gi|19975|lcl|protein:vir:108214 Length: 544 # NCBI annotation: gp5 # Family: family:all:523 # MgeID: mge:2004 # MgeName: Giles # Cross-refs: genbank:acc:YP_001552334;genbank:gi:160700654;genbank:Ge neID:5758934 Length = 544 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/39 (38%), Positives = 18/39 (46%) Query: 307 DDPEVLASVTPSLDVTVTLDDLITEARQALLEPQLKAEF 345 DDPE PS +TV DL E R A +L A + Sbjct: 280 DDPEAWRLACPSFGITVRERDLAREYRMARANARLLAIY 318 >gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp2, terminase # Family: family:all:523 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456732;genbank:gi:157168375;interpro:I PR005021;uniprot:Q9MBK3;genbank:GeneID:5580375 Length = 542 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 82 LQPWQKFVCVNLFGF-FEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRAS 137 L+PWQ++ ++ EK RF + ++ + R+ GKT L K +D S Sbjct: 45 LRPWQEWFFIHALELDPEKNYEDFRFRQLVLLVGRQNGKTLVMVILGLWKLFIDGCS 101 >gi|13082|lcl|protein:vir:81073 Length: 569 # NCBI annotation: p06 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1889 # MgeName: Xop411 # Cross-refs: genbank:acc:YP_001285676;genbank:gi:148727184;genbank:Ge neID:5247118 Length = 569 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYI 143 PW C +FG + T E +P+K K++ A+ + I + I Sbjct: 68 PWVLDFCRYVFGSYNADTGHNLIKEFFCLVPKKSSKSSIASGVMLTMLITGWRKSATYMI 127 Query: 144 VANSLKQTQESF 155 VA +++ Q SF Sbjct: 128 VAPTIEVAQASF 139 >gi|17283|lcl|protein:vir:398 Length: 245 # NCBI annotation: gp13 # Family: family:all:47 # MgeID: mge:325 # MgeName: N15 # Cross-refs: genbank:acc:NP_046908;genbank:gi:9630478;genbank:GeneID: 1261652 Length = 245 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 10/17 (58%), Positives = 12/17 (70%) Query: 461 DIVKWFMEMRDKGFKIK 477 D+V WF E KG+KIK Sbjct: 95 DLVNWFDEGTVKGYKIK 111 >gi|1219|lcl|protein:vir:105519 Length: 475 # NCBI annotation: phage terminase large subunit # Family: family:all:1730 # MgeID: mge:1463 # MgeName: phiSG1 # Cross-refs: genbank:acc:YP_516188;genbank:gi:89885991;genbank:GeneID :3964379 Length = 475 Score = 24.6 bits (52), Expect = 3.3, Method: Compositional matrix adjust. Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 7/99 (7%) Query: 374 SWTMEELSKLPITWYGGADLSKMHDLTASALYG---NYEYKGKSID---IVITHAFFPKS 427 +W+ S P+ W G K DL + L G + ++G I I T A + Sbjct: 81 AWSGYRFSHAPVIWCLGYSGEKCRDLLQTPLLGRKTDNGWQGGLIPGERIADTEAMTGTT 140 Query: 428 RAIEKAQEDDIPLFEWQEEGWATLSNTETVLYDDIVKWF 466 A+ A + + + W + S + L D V WF Sbjct: 141 NAVRTAYIRHVSGLLSKIQFW-SYSQGQHALMGDCVDWF 178 >gi|27123|lcl|protein:vir:6593 Length: 607 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:139 # MgeName: RB49 # Cross-refs: genbank:acc:NP_891724;genbank:gi:33620526;genbank:GeneID :1725332 Length = 607 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 3 EVDNFETAIQWSKDVISGNTLANIEQKQAAQRF 35 + D F+ +WS I+G++L Q+ A+ F Sbjct: 323 KADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFF 355 >gi|25348|lcl|protein:vir:80989 Length: 607 # NCBI annotation: gp17 terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1888 # MgeName: Phi1 # Cross-refs: genbank:acc:YP_001469498;genbank:gi:157311455;genbank:Ge neID:5602125 Length = 607 Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust. Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 3 EVDNFETAIQWSKDVISGNTLANIEQKQAAQRF 35 + D F+ +WS I+G++L Q+ A+ F Sbjct: 323 KADIFDDGYEWSSQAIAGSSLEQFLQEHNAEFF 355 >gi|5321|lcl|protein:vir:99534 Length: 422 # NCBI annotation: putative protein # Family: family:all:54 # MgeID: mge:1559 # MgeName: Lj928 # Cross-refs: genbank:acc:NP_958532;genbank:gi:41179314;genbank:GeneID :2717172 Length = 422 Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 16/35 (45%) Query: 370 NKQHSWTMEELSKLPITWYGGADLSKMHDLTASAL 404 NKQ + + S L WYGGA K H + + Sbjct: 16 NKQIFNNLFDYSHLTEVWYGGASSGKSHGVVQKVV 50 >gi|21077|lcl|protein:vir:100538 Length: 612 # NCBI annotation: gp17 terminase subunit # Family: family:all:147 # MgeID: mge:1488 # MgeName: 25 # Cross-refs: genbank:acc:YP_656379;genbank:gi:109290130;genbank:GeneI D:4156516 Length = 612 Score = 23.5 bits (49), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 468 EMRDKGFKIKSVHFDKKFGREFFMMMKKQKFKMV----DAPQQF 507 EMR+ G I S H DK + F +K Q K V D P F Sbjct: 21 EMREDGEWILSNHDDKWYPSTFDRYLKSQGVKRVKIQADDPSMF 64 >gi|23191|lcl|protein:vir:101186 Length: 613 # NCBI annotation: terminase DNA packaging enzyme large subunit # Family: family:all:147 # MgeID: mge:1582 # MgeName: 44RR2.8t # Cross-refs: genbank:acc:NP_932508;genbank:gi:37651634;genbank:GeneID :2610679 Length = 613 Score = 23.5 bits (49), Expect = 7.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 468 EMRDKGFKIKSVHFDKKFGREFFMMMKKQKFKMV----DAPQQF 507 EMR+ G + S H DK + F MK Q K V D P F Sbjct: 22 EMREDGEWVLSNHDDKWYPSTFDRYMKLQGVKRVKIQSDDPSMF 65 >gi|19650|lcl|protein:vir:10361 Length: 561 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:183 # MgeName: Xp10 # Cross-refs: genbank:acc:NP_858953;genbank:gi:32128418;genbank:GeneID :2648405 Length = 561 Score = 23.1 bits (48), Expect = 9.4, Method: Compositional matrix adjust. Identities = 40/194 (20%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 84 PWQKFVCVNLFGFFEKGTNIRRFNEALIFLPRKQGKTAFAASLTWAKNIVDRASGSKTYI 143 PW +FG + T E +P+K K++ A+ + + I+ + I Sbjct: 60 PWVLDFVRYIFGSYNAETGHNLIKEFFCLVPKKSSKSSIASGVMLTQLIMGWRKSASYLI 119 Query: 144 VANSLKQTQESFGFLTYNVEKIRNDVKKMRIRDNNQEHSVHVDFGDGYCDIFAIANQDDK 203 VA +++ Q SF + + +R D + ++ N H+ + + IA ++ Sbjct: 120 VAPTIEVAQASFKPAS---DSVRADPQLSKL-INISTHTRTLTNRVSGAVLKVIAADENS 175 Query: 204 LDSLNGNALILDEIHSWKKAGAKKYILMKNSQKAYRNKLLMGISTAGDIA---NGFLAQR 260 + + L++DE H + G K +N+ R AG +A GF+ + Sbjct: 176 VTGSKASVLLVDECH---RLGTK-----ENASSMLRE-------AAGGLAARPEGFIIKL 220 Query: 261 VTTLKKVLSGTIKD 274 T + +G KD Sbjct: 221 STQASEPPAGVFKD 234 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.319 0.134 0.395 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 274,366 Number of Sequences: 514 Number of extensions: 13534 Number of successful extensions: 266 Number of sequences better than 100.0: 89 Number of HSP's better than 100.0 without gapping: 84 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 104 length of query: 592 length of database: 206,069 effective HSP length: 77 effective length of query: 515 effective length of database: 166,491 effective search space: 85742865 effective search space used: 85742865 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)