BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= lcl|Aclame:protein:vir:4852|NCBI_annot:putative terminase large subunit|genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID:125850 3 (369 letters) Database: capsid_neck_tail 514 sequences; 206,069 total letters Searching...................................................done Score E Sequences producing significant alignments: (bits) Value gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: put... 765 0.0 gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: put... 737 0.0 gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: put... 724 0.0 gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF... 661 0.0 gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: put... 526 e-151 gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: put... 519 e-149 gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: ter... 518 e-149 gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hyp... 448 e-128 gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: ter... 280 3e-77 gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: pu... 265 1e-72 gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: pu... 260 2e-71 gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: put... 164 2e-42 gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hyp... 140 3e-35 gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hyp... 118 1e-28 gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: pha... 117 2e-28 gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: ter... 117 2e-28 gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi... 117 2e-28 gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: te... 117 3e-28 gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: pu... 117 3e-28 gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: pu... 114 2e-27 gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: ph... 114 2e-27 gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: te... 112 9e-27 gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: ph... 111 1e-26 gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: pu... 107 2e-25 gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: ph... 102 7e-24 gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: put... 74 3e-15 gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hyp... 71 2e-14 gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Termi... 62 1e-11 gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: ter... 56 8e-10 gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF... 54 2e-09 gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: pu... 54 2e-09 gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF... 54 2e-09 gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF... 54 3e-09 gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: ter... 53 7e-09 gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: ter... 50 5e-08 gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: ter... 40 4e-05 gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: te... 37 5e-04 gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF... 34 0.002 gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp3... 33 0.004 gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77... 33 0.007 gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: ph... 32 0.016 gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hyp... 32 0.016 gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: lar... 31 0.027 gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp... 30 0.037 gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: ph... 30 0.038 gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp... 30 0.045 gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp3... 30 0.052 gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: put... 30 0.056 gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: ter... 29 0.080 gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: ter... 28 0.12 gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: put... 28 0.13 gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: puta... 28 0.13 gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: put... 28 0.14 gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: put... 28 0.16 gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp... 27 0.33 gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp... 27 0.41 gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: put... 27 0.51 gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp... 27 0.53 gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: te... 26 0.69 gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8... 25 0.99 gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp... 25 1.1 gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Pu... 25 2.0 gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Pu... 25 2.0 gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp1... 24 3.6 gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: put... 22 8.6 gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: lar... 22 9.5 >gi|19929|lcl|protein:vir:4852 Length: 369 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:106 # MgeName: DT1 # Cross-refs: genbank:acc:NP_049392;genbank:gi:9632420;genbank:GeneID: 1258503 Length = 369 Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/369 (100%), Positives = 369/369 (100%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET Sbjct: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE Sbjct: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 Query: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL Sbjct: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 Query: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT Sbjct: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 Query: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE Sbjct: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 Query: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN 360 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN Sbjct: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN 360 Query: 361 PESGLLEEY 369 PESGLLEEY Sbjct: 361 PESGLLEEY 369 >gi|15731|lcl|protein:vir:4950 Length: 623 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:108 # MgeName: Sfi19 # Cross-refs: genbank:acc:NP_049926;genbank:gi:9632897;genbank:GeneID: 1262073 Length = 623 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/369 (94%), Positives = 362/369 (98%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 +PNRQFIQISTAYPNPSVPFREDQ+I+QQAMEDDD+RDADTYLCLVWSQDNL+EVF+PET Sbjct: 255 VPNRQFIQISTAYPNPSVPFREDQRIMQQAMEDDDSRDADTYLCLVWSQDNLEEVFKPET 314 Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 WAKSNPLLDLE ERENLMKGLMDKRDSDLLSGN+ADFQVKNMNCWLLADSNSFLDLKDIE Sbjct: 315 WAKSNPLLDLEQERENLMKGLMDKRDSDLLSGNIADFQVKNMNCWLLADSNSFLDLKDIE 374 Query: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 NAVIPEFD RGKRVYVGLDASMFSDNTAIGFVYPY+GEDGSQKWH+EQHSFIPWQQAGSL Sbjct: 375 NAVIPEFDRRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSL 434 Query: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 EAKMEQDGVNYRDLE KG+CTITSHPQGLINPEEVYRWF+DYVEDN LDVVFFGYDAMM Sbjct: 435 EAKMEQDGVNYRDLEAKGFCTITSHPQGLINPEEVYRWFVDYVEDNALDVVFFGYDAMMI 494 Query: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 +KIIK+LESNT+ PLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE Sbjct: 495 NKIIKALESNTSLPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 554 Query: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN 360 DNIGIQVDKMKSTYKIDVVDA+IDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVL WLKN Sbjct: 555 DNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLEWLKN 614 Query: 361 PESGLLEEY 369 PESGLLEEY Sbjct: 615 PESGLLEEY 623 >gi|18188|lcl|protein:vir:4993 Length: 623 # NCBI annotation: putative large subunit terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:109 # MgeName: Sfi21 # Cross-refs: genbank:acc:NP_049967;genbank:gi:9632939;genbank:GeneID: 1262101 Length = 623 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/369 (92%), Positives = 360/369 (97%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 +PNRQFIQISTAYPNPSVPFREDQ I+QQAMEDDDNR+ADTYLCLVWSQDNL+EVFQPET Sbjct: 255 VPNRQFIQISTAYPNPSVPFREDQMIMQQAMEDDDNREADTYLCLVWSQDNLEEVFQPET 314 Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 W KSNPLLDLE ER+NLMKGL+DKRDSDLLSGNL+DFQVKNMNCWLLADSNSFLDLKDIE Sbjct: 315 WMKSNPLLDLEQERDNLMKGLLDKRDSDLLSGNLSDFQVKNMNCWLLADSNSFLDLKDIE 374 Query: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 NAVI +FDI+GKRVYVGLDASMFSDNTA+GFVYPY+GEDGSQKWHIEQHSFIPWQQAGS+ Sbjct: 375 NAVIDDFDIKGKRVYVGLDASMFSDNTALGFVYPYLGEDGSQKWHIEQHSFIPWQQAGSI 434 Query: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 EAK+EQDG+NYRDLE KG+CTITSHPQGLINPEEVYRWFIDYVEDN LDVVFFGYDAMM Sbjct: 435 EAKIEQDGINYRDLETKGFCTITSHPQGLINPEEVYRWFIDYVEDNSLDVVFFGYDAMMV 494 Query: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 +KIIK+LESNT+FPLMPIRQRTSELKDPTKFLQTLFIEGNITR DDEIMRKALINAVIKE Sbjct: 495 NKIIKALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRRDDEIMRKALINAVIKE 554 Query: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN 360 DNIGIQVDKMKSTYKIDVVDA+IDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVL WLKN Sbjct: 555 DNIGIQVDKMKSTYKIDVVDALIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLEWLKN 614 Query: 361 PESGLLEEY 369 PESGLLEEY Sbjct: 615 PESGLLEEY 623 >gi|13853|lcl|protein:vir:4826 Length: 625 # NCBI annotation: ORF22 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:105 # MgeName: 7201 # Cross-refs: genbank:acc:NP_038323;genbank:gi:9634649;genbank:GeneID: 1262609 Length = 625 Score = 661 bits (1705), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/365 (86%), Positives = 334/365 (91%) Query: 5 QFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKS 64 +FI+IST+Y P VPF ++QK L + ME D +R D LCL+WSQDNL+EVF+PETWAKS Sbjct: 261 RFIEISTSYQTPDVPFHQEQKKLIEIMERDFDRSGDDQLCLIWSQDNLEEVFKPETWAKS 320 Query: 65 NPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAVI 124 NPLL+ +E LMKGL+ +RD LL G LADFQVKNMNCWLLADSNSFLDL DIENAVI Sbjct: 321 NPLLNHPELKEGLMKGLLSERDKKLLMGKLADFQVKNMNCWLLADSNSFLDLTDIENAVI 380 Query: 125 PEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKM 184 PEFDIRGKRVYVGLDASMFSDNTAIGFVYPY+GEDGSQKWH+EQHSFIPWQQAGSLEAKM Sbjct: 381 PEFDIRGKRVYVGLDASMFSDNTAIGFVYPYLGEDGSQKWHVEQHSFIPWQQAGSLEAKM 440 Query: 185 EQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKII 244 EQDGVNYRDLE+KGYCTITSHPQGLINPEEVYRWF DYVEDN LDVVFFGYDAM KII Sbjct: 441 EQDGVNYRDLEEKGYCTITSHPQGLINPEEVYRWFCDYVEDNALDVVFFGYDAMGVSKII 500 Query: 245 KSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNIG 304 K+LESNT+FPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNIG Sbjct: 501 KALESNTSFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNIG 560 Query: 305 IQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKNPESG 364 IQVDKMKSTYKIDVVDA+IDAFYD MYAFEDYAITNNPTWKVEHMSQEAVL WLKNPESG Sbjct: 561 IQVDKMKSTYKIDVVDALIDAFYDAMYAFEDYAITNNPTWKVEHMSQEAVLEWLKNPESG 620 Query: 365 LLEEY 369 LLEEY Sbjct: 621 LLEEY 625 >gi|17207|lcl|protein:vir:7405 Length: 646 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:146 # MgeName: P335 # Cross-refs: genbank:acc:NP_839922;genbank:gi:30089892;genbank:GeneID :1260673 Length = 646 Score = 526 bits (1356), Expect = e-151, Method: Compositional matrix adjust. Identities = 238/364 (65%), Positives = 301/364 (82%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 +PNRQF+QISTAYP+P+VPF ED+K+LQQAME D RDADTYLCL+WS D+LDE ++PET Sbjct: 265 VPNRQFVQISTAYPDPTVPFHEDEKMLQQAMEQDFLRDADTYLCLIWSNDSLDETYKPET 324 Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 W KSNPLLDL SE +NLM+GL+DKRD+D+L+G + DFQ KN+N WL +D +S+L+L D+E Sbjct: 325 WVKSNPLLDLASEHDNLMQGLLDKRDNDVLTGAVHDFQCKNLNMWLSSDIDSYLNLADVE 384 Query: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 A++PEF+I G+R YVG+D SM SDNTA+ FVYPYV E+G KWH+EQHSFIP+Q AGS+ Sbjct: 385 KAIVPEFNIYGQRCYVGVDYSMSSDNTAVAFVYPYVSEEGQAKWHVEQHSFIPFQAAGSI 444 Query: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 EAK +QDG+NYR+LE KG+CTITSH QGLIN +E Y W ++Y+E+N LDV+FFGYDAM Sbjct: 445 EAKEKQDGINYRELETKGFCTITSHQQGLINDDEFYEWIVNYIEENSLDVLFFGYDAMGV 504 Query: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 K+I+ L +NT F L PIRQRT EL PTKFLQ +F+EG I+RLDD+IM KAL+NAV++E Sbjct: 505 TKVIQMLLNNTGFNLQPIRQRTGELAKPTKFLQKIFVEGTISRLDDKIMEKALLNAVLRE 564 Query: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN 360 D++GIQVDK K+T KIDVVDAIIDA Y GM FEDY + N+ +W+VEHM+ E V W+ + Sbjct: 565 DSVGIQVDKRKATLKIDVVDAIIDALYQGMNHFEDYGMANDRSWQVEHMTPEQVKEWVTS 624 Query: 361 PESG 364 ESG Sbjct: 625 QESG 628 >gi|14114|lcl|protein:vir:3986 Length: 657 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:319 # MgeName: BK5-T # Cross-refs: genbank:acc:NP_116494;genbank:gi:14251127;genbank:GeneID :921256 Length = 657 Score = 519 bits (1337), Expect = e-149, Method: Compositional matrix adjust. Identities = 233/364 (64%), Positives = 303/364 (83%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 + N QF+QIST+YP+PSVPFR+DQK LQ+AME D +R+ADT LCLVW+QD+L E F+PET Sbjct: 276 VKNHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPET 335 Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 W KSNPLL+LE +++ L+KGL+DKR+SDLL G L DFQ KN+N WL D +S+L+L D+E Sbjct: 336 WVKSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVE 395 Query: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 A+IPEF I G+R Y+G+D SM SDNTAI FV+PY+ ++G KWH+EQHSF+P+Q+AGS+ Sbjct: 396 KAIIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSI 455 Query: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 +AK +QDG+NYR+LE+ G+CT+TSH QGLIN +EVY W ++Y+EDN LDV+FFGYDAM Sbjct: 456 DAKEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGI 515 Query: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 K+I+ L +NT + L PIRQRTSELKDPTKFLQ LF+EG+I+RLDD+IM K+L+NAV++E Sbjct: 516 TKVIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLRE 575 Query: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKN 360 D+IGIQVDK K+T KIDVVDAIIDA + GMY FEDY + N+ +W+VEHM+ E V W+ + Sbjct: 576 DSIGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMANDKSWQVEHMTPEQVKEWVTS 635 Query: 361 PESG 364 ESG Sbjct: 636 QESG 639 >gi|14802|lcl|protein:vir:1021 Length: 660 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:20 # MgeName: bIL286 # Cross-refs: genbank:acc:NP_076675;genbank:gi:13095784;genbank:GeneID :920366 Length = 660 Score = 518 bits (1335), Expect = e-149, Method: Compositional matrix adjust. Identities = 233/361 (64%), Positives = 301/361 (83%) Query: 3 NRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWA 62 N QF+QIST+YP+PSVPFR+DQK LQ+AME D +R+ADT LCLVW+QD+L E F+PETW Sbjct: 281 NHQFVQISTSYPDPSVPFRKDQKTLQEAMEKDWDREADTSLCLVWAQDDLSETFEPETWV 340 Query: 63 KSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENA 122 KSNPLL+LE +++ L+KGL+DKR+SDLL G L DFQ KN+N WL D +S+L+L D+E A Sbjct: 341 KSNPLLELEDKKDILLKGLIDKRNSDLLQGTLHDFQTKNLNMWLQQDVDSYLNLADVEKA 400 Query: 123 VIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEA 182 +IPEF I G+R Y+G+D SM SDNTAI FV+PY+ ++G KWH+EQHSF+P+Q+AGS++A Sbjct: 401 IIPEFSIHGQRCYIGIDYSMMSDNTAIAFVFPYLDDEGKPKWHVEQHSFVPFQRAGSIDA 460 Query: 183 KMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDK 242 K +QDG+NYR+LE+ G+CT+TSH QGLIN +EVY W ++Y+EDN LDV+FFGYDAM K Sbjct: 461 KEKQDGINYRELEKYGFCTVTSHQQGLINDDEVYEWIVNYIEDNALDVIFFGYDAMGITK 520 Query: 243 IIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDN 302 +I+ L +NT + L PIRQRTSELKDPTKFLQ LF+EG+I+RLDD+IM K+L+NAV++ED+ Sbjct: 521 VIQMLMNNTGYNLQPIRQRTSELKDPTKFLQKLFVEGSISRLDDKIMEKSLLNAVLREDS 580 Query: 303 IGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAWLKNPE 362 IGIQVDK K+T KIDVVDAIIDA + GMY FEDY + N+ +WKVEHM+ E V W+ + E Sbjct: 581 IGIQVDKRKATLKIDVVDAIIDALFQGMYHFEDYGMANDKSWKVEHMTPEQVKEWVTSQE 640 Query: 363 S 363 S Sbjct: 641 S 641 >gi|19237|lcl|protein:vir:3842 Length: 624 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:322 # MgeName: phi adh # Cross-refs: genbank:acc:NP_050148;swissprot:trembl:q9t1f9;genbank:gi :9633040;uniprot:Q9T1F9;genbank:GeneID:1262205 Length = 624 Score = 448 bits (1153), Expect = e-128, Method: Compositional matrix adjust. Identities = 217/369 (58%), Positives = 287/369 (77%), Gaps = 9/369 (2%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 + N QFIQIST+YP+P+VPF EDQK++ QAME D RDAD+YL L+WSQD+LDE ++PET Sbjct: 255 VSNHQFIQISTSYPDPTVPFHEDQKMIIQAMEQDWKRDADSYLGLIWSQDSLDETYKPET 314 Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 W KSNPLLDL +R+NL+KGL DKRDSDLL+GN++DFQ KN+N WL ++S+L+LKD+E Sbjct: 315 WVKSNPLLDLPDQRDNLLKGLTDKRDSDLLTGNISDFQTKNLNLWLKQSTDSYLNLKDVE 374 Query: 121 NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSL 180 +AV +F+I G V++G D SMFSDNTA+ FVYPY +DG K+HIEQHSFIP+QQAGS+ Sbjct: 375 DAVYNDFNIDGHEVFIGFDYSMFSDNTALSFVYPY--DDG--KFHIEQHSFIPFQQAGSI 430 Query: 181 EAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYD---A 237 EAK +QDG+ YR+ + YCTIT+HPQG+INPE++Y+W ++YVE +QL V FFGYD + Sbjct: 431 EAKEKQDGITYRNYPE--YCTITAHPQGIINPEQIYKWLLNYVEQHQLKVKFFGYDRFGS 488 Query: 238 MMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV 297 I +SL NT++ +M I+QRTS L +PTKFLQ LF+ +T +D +M+KAL+NAV Sbjct: 489 YQVKNITESLNVNTDWYIMDIQQRTSALANPTKFLQELFVTHKVTIPNDPVMQKALLNAV 548 Query: 298 IKEDNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAW 357 IK D IGI VDK K+T +IDVVDAIIDA Y MY F++ + NN +++ M+++ VL W Sbjct: 549 IKADKIGIHVDKDKATLQIDVVDAIIDALYQAMYYFDENSDLNNKDTEIDRMTEQQVLDW 608 Query: 358 LKNPESGLL 366 KN +SGLL Sbjct: 609 FKNSKSGLL 617 >gi|17903|lcl|protein:vir:1080 Length: 604 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:21 # MgeName: bIL309 # Cross-refs: genbank:acc:NP_076734;genbank:gi:13095844;genbank:GeneID :920385 Length = 604 Score = 280 bits (715), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 146/347 (42%), Positives = 222/347 (63%), Gaps = 10/347 (2%) Query: 2 PNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETW 61 P Q ISTA +P+VP ED K + +E D ++ L L+W QD+ DE + ETW Sbjct: 243 PLAQMFFISTAGVDPTVPMFEDYKRYSKMLESGDWSSSEKDLVLIWEQDSEDEAYLIETW 302 Query: 62 AKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIEN 121 KSNPL+++ES R+NL +G++ +RDS G + DF VKNMN W A N++L L +++ Sbjct: 303 PKSNPLMEIESMRKNLTEGMITERDSLNSQGRIRDFYVKNMNLWQNAKKNAYLPLDLVQD 362 Query: 122 AVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLE 181 A++ EFD G+ V++G D S +D+T++ FV+P+ G K+H+ QHS+IP +AGS+E Sbjct: 363 AIVDEFDYFGRDVFIGFDYSQTNDDTSLAFVFPHSGS----KFHLYQHSWIPIAKAGSIE 418 Query: 182 AKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTD 241 AK ++D ++YR +++KG+ TIT GLI+ +EV+ W ++++E N+L V YD T Sbjct: 419 AKEQRDNIDYRAVQEKGFATITRDRFGLIDEDEVFNWMLNFIEKNELRVKAILYDQWGTG 478 Query: 242 KIIKSL-ESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKE 300 I+ L E + L+P+RQ L +PTKFLQ+ FI+ NIT LDD+ + + L+NAV Sbjct: 479 NFIRRLDEVKEEYLLIPVRQGIKSLNEPTKFLQSSFIKHNITMLDDQALIQGLVNAVTVS 538 Query: 301 DNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFEDYA-----ITNNP 342 DN GI++DK ++ KID DAI++A Y+G + F D+ TN+P Sbjct: 539 DNNGIKLDKNVNSQKIDAADAIVNALYEGQFYFNDFTNVEEKKTNSP 585 >gi|3997|lcl|protein:vir:100199 Length: 629 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1524 # MgeName: phi AT3 # Cross-refs: genbank:acc:YP_025027;genbank:gi:48697260;genbank:GeneID :2948297 Length = 629 Score = 265 bits (676), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 145/344 (42%), Positives = 216/344 (62%), Gaps = 12/344 (3%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 + NR F++ISTAYP+ V F+ D+ + + A+E D RDAD ++++QD+ DEVF+PET Sbjct: 262 IKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYAQDSEDEVFEPET 321 Query: 61 WAKSNP-LLDLE-SERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKD 118 WAKSNP LL+L+ S+R+NL K L R+ + G L F K++N W NS+L L + Sbjct: 322 WAKSNPNLLELQKSKRDNLQKALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDN 381 Query: 119 IENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 I+ ++I FD+ G+ V++G D S +DNT+ GF+YPY D +H++QHSFIP+ QA Sbjct: 382 IQRSIIDHFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHD-KHMFHVQQHSFIPFAQAK 440 Query: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 ++EAK +QDG++Y L+ +G+ IT+ G+IN E+VY+W +DYV ++L V F D Sbjct: 441 TIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTEQVYQWLVDYVNQHRLKVKFIIADPN 500 Query: 239 MTDKIIKSLESNTN----FPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALI 294 + + K LE FPL P + +L +PTK Q LFI GNIT L+D ++ L Sbjct: 501 HGEWLEKKLEHYQPQWQWFPLPPT---SFKLNEPTKDFQNLFINGNITMLNDPLLIDGLN 557 Query: 295 NAVIKEDNIG-IQVDKMKSTY-KIDVVDAIIDAFYDGMYAFEDY 336 NAV+ ED G +++D+ T ID DA+I+A + FE+Y Sbjct: 558 NAVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFENY 601 >gi|1545|lcl|protein:vir:100880 Length: 630 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1473 # MgeName: Lc-Nu # Cross-refs: genbank:acc:YP_358760;genbank:gi:78000026;genbank:GeneID :3726151 Length = 630 Score = 260 bits (665), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 143/344 (41%), Positives = 215/344 (62%), Gaps = 12/344 (3%) Query: 1 MPNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPET 60 + NR F++ISTAYP+ V F+ D+ + + A+E D RDAD +++SQD+ DEVF+PET Sbjct: 263 IKNRMFVKISTAYPDIKVKFKNDEDVTRAAIEHDAVRDADNVFQVIYSQDSEDEVFEPET 322 Query: 61 WAKSNP-LLDL-ESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKD 118 WAKSNP LL+L +S+R+NL L R+ + G L F K++N W NS+L L + Sbjct: 323 WAKSNPNLLELPKSKRDNLQNALNQDRNDNEREGTLETFVNKSLNLWSRRFQNSYLSLDN 382 Query: 119 IENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 I+ ++I FD+ G+ V++G D S +DNT+ GF+YPY D +H++QHSFIP+ QA Sbjct: 383 IQRSIIDRFDVNGRDVFIGFDGSQTNDNTSFGFIYPYTDHD-KHMFHVQQHSFIPFAQAK 441 Query: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 ++EAK +QDG++Y L+ +G+ IT+ G+IN ++VY+W +DYV ++L V F D Sbjct: 442 TIEAKSKQDGLDYLKLQDEGFVDITNLASGVINTDQVYQWLVDYVNQHRLKVKFIIADPN 501 Query: 239 MTDKIIKSLESNTN----FPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALI 294 + + K LE FPL P + +L +PTK Q LFI GNI+ L+D ++ L Sbjct: 502 HGEWLEKKLEHYQPQWQWFPLPPT---SFKLNEPTKDFQNLFINGNISMLNDPLLIDGLN 558 Query: 295 NAVIKEDNIG-IQVDKMKSTY-KIDVVDAIIDAFYDGMYAFEDY 336 NAV+ ED G +++D+ T ID DA+I+A + FE+Y Sbjct: 559 NAVLVEDRGGSVKIDRQNRTSDHIDTTDALINAHAQAKFYFENY 602 >gi|15101|lcl|protein:vir:3867 Length: 563 # NCBI annotation: putative large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:82 # MgeName: A2 # Cross-refs: genbank:acc:NP_680484;swissprot:trembl:q8ltc3;genbank:gi :22296524;interpro:IPR005021;uniprot:Q8LTC3;genbank:Gene ID:951698 Length = 563 Score = 164 bits (415), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 106/329 (32%), Positives = 177/329 (53%), Gaps = 12/329 (3%) Query: 1 MPNRQFIQISTAYPNPSVP-FREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPE 59 +P+ ISTA + +VP F+++ ++ + ++ A+ Y + QDN+ EV P Sbjct: 220 LPSYLTFIISTAGFDMNVPMFQQNYPYAKKVLSGEEK--AERYFAFIAEQDNVQEVDDPN 277 Query: 60 TWAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDI 119 +W KSNPLLD+++ + L K G+L VKN N W A +S+LD Sbjct: 278 SWIKSNPLLDVDTLHSQISDYLTTKLAQARADGSLNAKLVKNFNIWRQATEDSYLDFDAW 337 Query: 120 ENAVIPEF-DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 + A + + DIRG+R ++G+D SD AI ++ P G W ++ ++F+ G Sbjct: 338 KAAELTDKPDIRGQRAWIGIDVGRTSDLFAISWLIPQEGW-----WWLDGYAFVA--SKG 390 Query: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 ++ K++ D ++Y EQ G I+S G+I+ + VY W D++E N +DV YD Sbjct: 391 GIDNKIKTDRIDYLAAEQHGEGEISSLESGIIDNDRVYEWLEDFIERNDIDVQGIMYDPY 450 Query: 239 MTDKIIKSLESN-TNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV 297 ++ ++E N +P++ +RQ T L PTK + I G I D+ IM+ A +NAV Sbjct: 451 QFGPMLTAIEKNHPEWPMVQVRQGTLTLSMPTKQFRDDVIGGRIKHSDNRIMQAAAMNAV 510 Query: 298 IKEDNIGIQVDKMKSTYKIDVVDAIIDAF 326 + DN G++++K K KID++DA +DA+ Sbjct: 511 LMSDNNGVRINKNKYANKIDMIDATLDAY 539 >gi|16631|lcl|protein:vir:9699 Length: 584 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:174 # MgeName: 315.2 # Cross-refs: genbank:acc:NP_795461;genbank:gi:28876230;genbank:GeneID :1257775 Length = 584 Score = 140 bits (352), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 165/324 (50%), Gaps = 19/324 (5%) Query: 9 ISTAYPNPSVPFREDQ-----KILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAK 63 ISTA + +VP + KIL + D+ Y V QDN +E+ W K Sbjct: 248 ISTAGMDLNVPMHTIEYPYITKILDGEITDEG------YFGYVAEQDNEEEIKDESNWIK 301 Query: 64 SNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 SNP+L++E+ + LM L +R L +G + +KN N W + S++D + E A Sbjct: 302 SNPILEVEALHDKLMDYLRTRRRVSLETGEINKVLIKNFNMWRQSSEESYIDKQSWELAQ 361 Query: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 I + D +RV++G+D SD AI V W+++ SF+ + L AK Sbjct: 362 IDKPDTYKRRVWLGVDVGRVSDLFAISSVIMM-----DDYWYLDSFSFVATKYG--LTAK 414 Query: 184 MEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKI 243 ++DGV+Y +LE++GYC IT+ G+I+ E V + V N+ +V +D + Sbjct: 415 EKRDGVSYSNLERQGYCEITTLESGVIDDERVLEKIEEMVYTNEWEVNGICFDPYQFGTL 474 Query: 244 IKSLES-NTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDN 302 + +E + +PL+ + Q T L PTK + +G I + ++ A+ NA IK DN Sbjct: 475 LTMIEKRHPEWPLIEVSQTTMVLNMPTKQFRDDLKKGKIKHSGNPLLTMAVNNAYIKTDN 534 Query: 303 IGIQVDKMKSTYKIDVVDAIIDAF 326 G+++DK K++ KID +DA +D + Sbjct: 535 NGMRIDKNKNSNKIDPLDAALDGY 558 >gi|17436|lcl|protein:vir:4596 Length: 564 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:101 # MgeName: PVL # Cross-refs: genbank:acc:NP_058441;genbank:gi:9635167;genbank:GeneID: 1262735 Length = 564 Score = 118 bits (296), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 +STA N + ++ K +++ + ++ AD Y D+ +EV W K+ PLL Sbjct: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLL 286 Query: 69 DLESERENLMKGLMDKRDSDLLSG-NLADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF 127 + + R+ +++ + +L G + +KN N W +S LD+ D E + P Sbjct: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 Query: 128 DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQD 187 +I GK VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D Sbjct: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRD 400 Query: 188 GVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSL 247 +NY ++G T G+I+ ++V + + ++ + L+V YD I ++ Sbjct: 401 KINYELAIERGEAETTQSDSGMIDSKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 Query: 248 ESNT-NFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGI 305 ES ++PL+ + Q L K + + I D+ ++ ++ NAV I++ + Sbjct: 461 ESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNV 520 Query: 306 QVDKMKSTYKIDVVDAIIDAFYDG-MYAFED 335 +++K + KID + +II AF + M+ F++ Sbjct: 521 KINKKMNRQKIDPIISIITAFTEARMHEFQE 551 >gi|6158|lcl|protein:vir:98395 Length: 564 # NCBI annotation: phage terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1581 # MgeName: phiPVL(108) # Cross-refs: genbank:acc:YP_918928;genbank:gi:119443690;genbank:GeneI D:4594557 Length = 564 Score = 117 bits (294), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 +STA N + ++ K +++ + ++ AD Y D+ +EV W K+ PLL Sbjct: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLL 286 Query: 69 DLESERENLMKGLMDKRDSDLLSG-NLADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF 127 + + R+ +++ + +L G + +KN N W +S LD+ D E + P Sbjct: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 Query: 128 DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQD 187 +I GK VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D Sbjct: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRD 400 Query: 188 GVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSL 247 +NY ++G T G+I+ ++V + + ++ + L+V YD I ++ Sbjct: 401 KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 Query: 248 ESNT-NFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGI 305 ES ++PL+ + Q L K + + I D+ ++ ++ NAV I++ + Sbjct: 461 ESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNV 520 Query: 306 QVDKMKSTYKIDVVDAIIDAFYDG-MYAFED 335 +++K + KID + +II AF + M+ F++ Sbjct: 521 KINKKMNRQKIDPIISIITAFTEARMHEFQE 551 >gi|16578|lcl|protein:vir:9406 Length: 564 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:167 # MgeName: phi 13 # Cross-refs: genbank:acc:NP_803384;genbank:gi:29028696;genbank:GeneID :1258137 Length = 564 Score = 117 bits (294), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 +STA N + ++ K +++ + ++ AD Y D+ +EV W K+ PLL Sbjct: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLL 286 Query: 69 DLESERENLMKGLMDKRDSDLLSG-NLADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF 127 + + R+ +++ + +L G + +KN N W +S LD+ D E + P Sbjct: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 Query: 128 DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQD 187 +I GK VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D Sbjct: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRD 400 Query: 188 GVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSL 247 +NY ++G T G+I+ ++V + + ++ + L+V YD I ++ Sbjct: 401 KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 Query: 248 ESNT-NFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGI 305 ES ++PL+ + Q L K + + I D+ ++ ++ NAV I++ + Sbjct: 461 ESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNV 520 Query: 306 QVDKMKSTYKIDVVDAIIDAFYDG-MYAFED 335 +++K + KID + +II AF + M+ F++ Sbjct: 521 KINKKMNRQKIDPIISIITAFTEARMHEFQE 551 >gi|13570|lcl|protein:vir:4696 Length: 564 # NCBI annotation: phi PVL ORF 2 homologue # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:102 # MgeName: phiPV83 # Cross-refs: genbank:acc:NP_061628;genbank:gi:9635715;genbank:GeneID: 1263009 Length = 564 Score = 117 bits (294), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 +STA N + ++ K +++ + ++ AD Y D+ +EV W K+ PLL Sbjct: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLL 286 Query: 69 DLESERENLMKGLMDKRDSDLLSG-NLADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF 127 + + R+ +++ + +L G + +KN N W +S LD+ D E + P Sbjct: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 Query: 128 DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQD 187 +I GK VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D Sbjct: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRD 400 Query: 188 GVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSL 247 +NY ++G T G+I+ ++V + + ++ + L+V YD I ++ Sbjct: 401 KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 Query: 248 ESNT-NFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGI 305 ES ++PL+ + Q L K + + I D+ ++ ++ NAV I++ + Sbjct: 461 ESMALDWPLIEVGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNV 520 Query: 306 QVDKMKSTYKIDVVDAIIDAFYDG-MYAFED 335 +++K + KID + +II AF + M+ F++ Sbjct: 521 KINKKMNRQKIDPIISIITAFTEARMHEFQE 551 >gi|12519|lcl|protein:vir:79971 Length: 564 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1875 # MgeName: tp310-3 # Cross-refs: genbank:acc:YP_001429998;genbank:gi:156604053;genbank:Ge neID:5525431 Length = 564 Score = 117 bits (292), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 +STA N + ++ K +++ + ++ AD Y D+ +EV W K+ PLL Sbjct: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLL 286 Query: 69 DLESERENLMKGLMDKRDSDLLSG-NLADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF 127 + + R+ +++ + +L G + +KN N W +S LD+ D E + P Sbjct: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 Query: 128 DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQD 187 +I GK VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D Sbjct: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRD 400 Query: 188 GVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSL 247 +NY ++G T G+I+ ++V + + ++ + L+V YD I ++ Sbjct: 401 KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 Query: 248 ESNT-NFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGI 305 ES ++PL+ + Q L K + + I D+ ++ ++ NAV I++ + Sbjct: 461 ESMALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNV 520 Query: 306 QVDKMKSTYKIDVVDAIIDAFYDG-MYAFED 335 +++K + KID + +II AF + M+ F++ Sbjct: 521 KINKKMNRQKIDPIISIITAFTEARMHEFQE 551 >gi|13171|lcl|protein:vir:81099 Length: 564 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1891 # MgeName: tp310-1 # Cross-refs: genbank:acc:YP_001429870;genbank:gi:156603923;genbank:Ge neID:5525319 Length = 564 Score = 117 bits (292), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 86/331 (25%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 +STA N + ++ K +++ + ++ AD Y D+ +EV W K+ PLL Sbjct: 229 VSTAGDNLNSQMYQEYKYIKRILNEEVR--ADNYFVYCAEMDSQEEVQDETKWIKAMPLL 286 Query: 69 DLESERENLMKGLMDKRDSDLLSG-NLADFQVKNMNCWLLADSNSFLDLKDIENAVIPEF 127 + + R+ +++ + +L G + +KN N W +S LD+ D E + P Sbjct: 287 ESKEHRKTILQNVKADIQDELEKGTSYHKILIKNFNLWQAQREDSLLDISDWEQVITPMP 346 Query: 128 DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQD 187 +I GK VY+G+D S D T++GF++P + +K + HSFI + +LE K ++D Sbjct: 347 NINGKDVYIGVDLSRLDDLTSVGFIFP----NDDKKVFLHSHSFIGLR--TNLEQKSKRD 400 Query: 188 GVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSL 247 +NY ++G T G+I+ ++V + + ++ + L+V YD I ++ Sbjct: 401 KINYELAIERGEAETTQSDSGMIDYKQVIDFIVKFITTHDLNVQAVCYDPWNAQSFITTI 460 Query: 248 ESNT-NFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAV-IKEDNIGI 305 ES ++PL+ + Q L K + + I D+ ++ ++ NAV I++ + Sbjct: 461 ESMALDWPLIELGQSFKALSQSIKEFRMWVADERIQHNDNMLLTTSVNNAVLIRDGEDNV 520 Query: 306 QVDKMKSTYKIDVVDAIIDAFYDG-MYAFED 335 +++K + KID + +II AF + M+ F++ Sbjct: 521 KINKKMNRQKIDPIISIITAFTEARMHEFQE 551 >gi|2370|lcl|protein:vir:105001 Length: 565 # NCBI annotation: putative phage terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1490 # MgeName: W Beta # Cross-refs: genbank:acc:YP_459966;genbank:gi:85701381;genbank:GeneID :3882142 Length = 565 Score = 114 bits (285), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 157/330 (47%), Gaps = 25/330 (7%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 I+TA + S P + + + ++ N + D Y ++ + D++ W K+NP++ Sbjct: 234 ITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV 293 Query: 69 -----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 LE R +L K +D+ + + F KNMN W+ N ++D+ + Sbjct: 294 ATYEEGLEGIRSDL-KVALDRPEK------MRAFLTKNMNIWVDKKDNGYMDMSKWQKCE 346 Query: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 + FD G +++G D SM +D T++G +VG D + + QHSF+P L+ K Sbjct: 347 VDTFDFSGATLWIGGDLSMTTDLTSVG----WVGMDDEGDFIVGQHSFMP---EARLKEK 399 Query: 184 MEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKI 243 M D V Y ++GY T+T P +++ V W ++ +D ++ F YD + Sbjct: 400 MAIDKVRYDLWAEQGYLTLT--PGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHL 455 Query: 244 IKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIK-EDN 302 ++LE N F + I QR + L PTK + E + D ++ AL NAV+K +D Sbjct: 456 AQNLE-NKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQ 514 Query: 303 IGIQVDKMKSTYKIDVVDAIIDAFYDGMYA 332 I + K S +ID A+++AF MY Sbjct: 515 ENIMISKKISKNRIDPAAAVLNAFARAMYG 544 >gi|2423|lcl|protein:vir:107576 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1491 # MgeName: Gamma # Cross-refs: genbank:acc:YP_338185;genbank:gi:77020155;genbank:GeneID :3703707 Length = 565 Score = 114 bits (285), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 92/330 (27%), Positives = 157/330 (47%), Gaps = 25/330 (7%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 I+TA + S P + + + ++ N + D Y ++ + D++ W K+NP++ Sbjct: 234 ITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV 293 Query: 69 -----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 LE R +L K +D+ + + F KNMN W+ N ++D+ + Sbjct: 294 ATYEEGLEGIRSDL-KVALDRPEK------MRAFLTKNMNIWVDKKDNGYMDMSKWQKCE 346 Query: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 + FD G +++G D SM +D T++G +VG D + + QHSF+P L+ K Sbjct: 347 VDTFDFSGATLWIGGDLSMTTDLTSVG----WVGMDDEGDFIVGQHSFMP---EARLKEK 399 Query: 184 MEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKI 243 M D V Y ++GY T+T P +++ V W ++ +D ++ F YD + Sbjct: 400 MAIDKVRYDLWAEQGYLTLT--PGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHL 455 Query: 244 IKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIK-EDN 302 ++LE N F + I QR + L PTK + E + D ++ AL NAV+K +D Sbjct: 456 AQNLE-NKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQ 514 Query: 303 IGIQVDKMKSTYKIDVVDAIIDAFYDGMYA 332 I + K S +ID A+++AF MY Sbjct: 515 ENIMISKKISKNRIDPAAAVLNAFSRAMYG 544 >gi|2959|lcl|protein:vir:102079 Length: 565 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1503 # MgeName: Fah # Cross-refs: genbank:acc:YP_512312;genbank:gi:89152481;genbank:GeneID :3953072 Length = 565 Score = 112 bits (279), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 156/330 (47%), Gaps = 25/330 (7%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 I+TA + S P + + + ++ N + D Y ++ + D++ W K+NP++ Sbjct: 234 ITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV 293 Query: 69 -----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 LE R +L K +D+ + + F KNMN W+ N ++D+ + Sbjct: 294 ATYEEGLEGIRSDL-KVALDRPEK------MRAFLTKNMNIWVDKKDNGYMDMSKWQKCE 346 Query: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 + D G +++G D SM +D T++G +VG D + + QHSF+P L+ K Sbjct: 347 VDTLDFSGATLWIGGDLSMTTDLTSVG----WVGMDDEGDFIVGQHSFMP---EARLKEK 399 Query: 184 MEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKI 243 M D V Y ++GY T+T P +++ V W ++ +D ++ F YD + Sbjct: 400 MAIDKVRYDLWAEQGYLTLT--PGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHL 455 Query: 244 IKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIK-EDN 302 ++LE N F + I QR + L PTK + E + D ++ AL NAV+K +D Sbjct: 456 AQNLE-NKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQ 514 Query: 303 IGIQVDKMKSTYKIDVVDAIIDAFYDGMYA 332 I + K S +ID A+++AF MY Sbjct: 515 ENIMISKKISKNRIDPAAAVLNAFARAMYG 544 >gi|2476|lcl|protein:vir:102883 Length: 565 # NCBI annotation: phage terminase, large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1492 # MgeName: Cherry # Cross-refs: genbank:acc:YP_338134;genbank:gi:77020208;genbank:GeneID :3703792 Length = 565 Score = 111 bits (277), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 156/330 (47%), Gaps = 25/330 (7%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 I+TA + S P + + + ++ N + D Y ++ + D++ W K+NP++ Sbjct: 234 ITTAGFDLSRPCYREYEYVSDILDPSKNVENDDYFVMICELEKNDDIKDESNWIKANPIV 293 Query: 69 -----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 LE R +L K +D+ + + F KNMN W+ N ++D+ + Sbjct: 294 ATYEEGLEGIRSDL-KVALDRPEK------MRAFLTKNMNIWVDKKDNGYMDMSKWQKCE 346 Query: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 + D G +++G D SM +D T++G +VG D + + QHSF+P L+ K Sbjct: 347 VDTXDFSGATLWIGGDLSMTTDLTSVG----WVGMDDEGDFIVGQHSFMP---EARLKEK 399 Query: 184 MEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKI 243 M D V Y ++GY T+T P +++ V W ++ +D ++ F YD + Sbjct: 400 MAIDKVRYDLWAEQGYLTLT--PGEMVDYTIVESWIENFSKDKEIQE--FDYDKWNALHL 455 Query: 244 IKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIK-EDN 302 ++LE N F + I QR + L PTK + E + D ++ AL NAV+K +D Sbjct: 456 AQNLE-NKGFVCVEIPQRIANLSIPTKNFREKVYEKKVKHNGDPVLFWALNNAVVKMDDQ 514 Query: 303 IGIQVDKMKSTYKIDVVDAIIDAFYDGMYA 332 I + K S +ID A+++AF MY Sbjct: 515 ENIMISKKISKNRIDPAAAVLNAFXRAMYG 544 >gi|13199|lcl|protein:vir:81178 Length: 567 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1892 # MgeName: Geobacillus virus E2 # Cross-refs: genbank:acc:YP_001285808;genbank:gi:148747729;genbank:Ge neID:5247221 Length = 567 Score = 107 bits (268), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/326 (26%), Positives = 156/326 (47%), Gaps = 14/326 (4%) Query: 3 NRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWA 62 N + I+TA N + P + + + + ++ + + Y ++ D D++ W Sbjct: 229 NPLIVIITTAGFNLASPCYTEYQYVSKVIDPGSPIENEEYFVMICELDKDDDIKDERNWV 288 Query: 63 KSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENA 122 K+NP++ E N ++ + + + + + F KNMN W+ N +L L Sbjct: 289 KANPIVATYEEGMNFLRSEL--QTALDVPEKMRSFLTKNMNIWVDQKDNGYLPLDKWRAC 346 Query: 123 VIPE-FDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLE 181 I E D+ + YVG+D SM D T++ + P +DG ++++ HSFIP +L Sbjct: 347 AIKEQIDLDVRDCYVGIDLSMRIDLTSVSGIVPM--DDG--RFYVWSHSFIP---EDTLA 399 Query: 182 AKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTD 241 K D V Y ++G+ T+T P +++ + + + ED ++ YD Sbjct: 400 EKRRTDKVPYDLWVKQGWITVT--PGAVVDYQFIQAYIKRLAEDKMWNIKEICYDPYNAT 457 Query: 242 KIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKED 301 +E+ + ++ IRQ L +PTK + L + G I D+ ++ A+ NAV+K+D Sbjct: 458 HFAHEMEAE-GYVMVEIRQGFRTLSEPTKRFRELVLSGKILHDDNPVLNWAIGNAVVKQD 516 Query: 302 -NIGIQVDKMKSTYKIDVVDAIIDAF 326 N I +DK KST +ID + A+I+A Sbjct: 517 HNENIMLDKDKSTGRIDPIAALINAM 542 >gi|8690|lcl|protein:vir:102145 Length: 581 # NCBI annotation: phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1641 # MgeName: phiSM101 # Cross-refs: genbank:acc:YP_699944;genbank:gi:110804033;genbank:GeneI D:4206689 Length = 581 Score = 102 bits (254), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 87/328 (26%), Positives = 159/328 (48%), Gaps = 18/328 (5%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 I+TA N + P ++ + + +E N D Y + D D+++ P W K+NPL+ Sbjct: 233 ITTAGFNLNGPCYKEWEYCKNVLEGIVNND--EYFIYIAQMDVEDDIWDPNNWLKANPLV 290 Query: 69 -DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFL--DLKDIENAVIP 125 L ENL + + + +L +F K++N W ++ ++ + + + + Sbjct: 291 AKLPKGLENLKRFAEESKQKG--GDDLKNFLTKSLNIWYEFSNDQYIGPSVWKVGASKLT 348 Query: 126 EFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGE----DGSQKWHIEQHSFIPWQQAGSLE 181 + +GK Y GLD S D T++ ++PY E + +K+ I HSFIP ++ Sbjct: 349 LENFKGKTCYAGLDLSSGGDLTSLALIFPYEFEKENGEKVRKYFIHSHSFIPKRRVAE-- 406 Query: 182 AKMEQDGVNYRDLEQKGYCTITSHPQGL-INPEEVYRWFIDYVEDNQLDVVFFGYDAMMT 240 ++ D V Y + G T+T G+ + + + ++ D +E+ QL ++ GYD Sbjct: 407 -HIQSDDVPYDVWIENGLLTVTETLGGIKTDYKYIIKYLRDLIEEFQLKIIQLGYDPHNA 465 Query: 241 DKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNIT-RLDDEIMRKALINA-VI 298 D ++ LE F + I Q L DPT+ + GNI ++E++ +++NA ++ Sbjct: 466 DTFLQDLEE-LGFDCVEIFQSCKWLNDPTEDFKLECEAGNIEYNEENELLSWSVVNAKLV 524 Query: 299 KEDNIGIQVDKMKSTYKIDVVDAIIDAF 326 N I++DK +ID VDA+IDA+ Sbjct: 525 SNSNGEIKIDKNLQEKRIDPVDAVIDAY 552 >gi|17128|lcl|protein:vir:1379 Length: 581 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:314 # MgeName: phi3626 # Cross-refs: genbank:acc:NP_612831;genbank:gi:20065965;genbank:GeneID :935781 Length = 581 Score = 73.9 bits (180), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 79/315 (25%), Positives = 142/315 (45%), Gaps = 35/315 (11%) Query: 34 DDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLLDLESERENLMKGLMDKRDSDLLSGN 93 D + + Y ++ ++ D+ F + W K+NP+L E G+ R + L+ N Sbjct: 258 DGTFENEKYFVMICELEDEDDPFDEKAWIKANPVLCTYEE------GIESMRQNANLAKN 311 Query: 94 LA------DFQVKNMNCWLLADSNSFLDLK----DIENAVIPEFDIRGKRVYVGLDASMF 143 + +F KN N ++ A ++D++ EN + +F RG Y+G+D S Sbjct: 312 TSNEEKRIEFLTKNCNIYVAAGEKKYVDVEFWKACKENITLEKF--RGHDCYIGMDLSKS 369 Query: 144 SDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQDGVNYR--DLEQKGYCT 201 D T+I F +PY+ E G +K+ + SFIP A ++ KM+ D V Y ++KG+ Sbjct: 370 GDLTSIAFEFPYLDE-GIRKYALFGKSFIP---AEVVKEKMKTDNVPYNIWSSKEKGWLI 425 Query: 202 ITSHPQGLINPEEVYRWFI-----DYVEDNQLDVVFFGYDAMMTDKIIKSLESNTNFPLM 256 T +G I V W I V++ +L+V+ YD ++ LE ++ + Sbjct: 426 KTEANEGQI----VDLWAILNTIESIVKEYELNVIEVSYDPHGAAMLVSELERR-DYNCV 480 Query: 257 PIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNIG-IQVDKMKSTYK 315 Q ++L + T + L I ++ +M + NA ++ G I++ K + Sbjct: 481 ECGQSCAKLNEATVNFRDLMKIKQIVHDENNLMTWCVQNAEKDTNSFGEIKISKKSRFKR 540 Query: 316 IDVVDAIIDAFYDGM 330 ID + + I A M Sbjct: 541 IDPLASCIFAHNRAM 555 >gi|13389|lcl|protein:vir:1263 Length: 416 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:329 # MgeName: phi-105 # Cross-refs: genbank:acc:NP_690755;genbank:gi:22854995;genbank:GeneID :955207 Length = 416 Score = 71.2 bits (173), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 98/208 (47%), Gaps = 20/208 (9%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 I+TA N P ++ + + ++ D + + D Y ++ D D++ W K+NP++ Sbjct: 224 ITTAGFNMERPCFKEYQYTSKILDPDIDTENDDYFVMICELDPEDDIKDESNWIKANPIV 283 Query: 69 -----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAV 123 +ES R L L + + F KNMN W+ N ++ + Sbjct: 284 ATYPEGMESLRSALKVALE-------VPEKMRSFLTKNMNRWVDQKDNGYMKMTKWRACS 336 Query: 124 IPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAK 183 D++G VY+GLD SM +D T++G+V +DG +++ QHSF+P +A K Sbjct: 337 GEIPDLQGLPVYLGLDLSMTTDLTSVGYV---AVQDGF--FYVGQHSFMPDARANE---K 388 Query: 184 MEQDGVNYRDLEQKGYCTITSHPQGLIN 211 M D V Y + G+ T TS + +IN Sbjct: 389 MATDKVPYDLWREMGFITYTSGEELIIN 416 >gi|967|lcl|protein:vir:6208 Length: 574 # NCBI annotation: Terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:128 # MgeName: phBC6A52 # Cross-refs: genbank:acc:NP_852588;genbank:gi:31415848;genbank:GeneID :1489206 Length = 574 Score = 61.6 bits (148), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/327 (21%), Positives = 147/327 (44%), Gaps = 18/327 (5%) Query: 6 FIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSN 65 + ISTA S K + +E+DD+ D+ +W + + + W N Sbjct: 244 MLNISTAGKGASSVGMRVYKYAKLVLENDDD---DSLFVAIWEPNKNYDWEDRKVWKMVN 300 Query: 66 PLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIENAVIP 125 P + + E L + S + + A+F K++N ++ N F + +++ ++ Sbjct: 301 PNIGVSVTMEQLEIEFKKAKQS---AHSKAEFLSKHLNVFVNGADNYF-EHDQVQHVLVK 356 Query: 126 EF-DIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKM 184 + D+ G+ Y+GLD S +D T + +P ++G ++Q F+P + +++ K Sbjct: 357 DLGDLTGEICYLGLDLSKTTDLTCVSLNFPSHDDEGRSIIKVKQMYFLPNE---NIDFKE 413 Query: 185 EQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKII 244 ++D V Y D+ ++G+ T +I+ +++ + ++ ++ DV YD M+ K+I Sbjct: 414 KEDNVPYTDMVERGFATFCDGK--MIDQDQIMEYIVECMD--LYDVQQINYDPAMSQKLI 469 Query: 245 KSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKEDNIG 304 + LE N + + Q + + + L E + D+ + +N V+ + G Sbjct: 470 EKLE-NLGLECIAVNQYPNVMNAMLDDSEILIYEKRLIT-DNPLFVYCALNVVVVTNING 527 Query: 305 IQV-DKMKSTYKIDVVDAIIDAFYDGM 330 ++ K +S KID A + A + M Sbjct: 528 MKAPSKRQSKKKIDGFVAFLCAHKETM 554 >gi|17412|lcl|protein:vir:2682 Length: 563 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:57 # MgeName: phiSLT # Cross-refs: genbank:acc:NP_075501;genbank:gi:12719430;genbank:GeneID :920187 Length = 563 Score = 55.8 bits (133), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 28/277 (10%) Query: 61 WAKSNPLL----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDL 116 W K+NP L DL+ +E K KR DF K N + D SF+D Sbjct: 286 WIKANPNLGVSIDLDEMKEEWEKA---KRT----PAERGDFITKRFNIFANNDEMSFIDY 338 Query: 117 KDIE--NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPW 174 ++ N +I ++ G+ +G D S D TA + ++G K + HS+IP Sbjct: 339 PTLQKNNEIISLDELEGRPCTIGYDLSETEDFTAACATFAL--DNG--KVAVLTHSWIPK 394 Query: 175 QQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFG 234 + + + + YR+ E+ G TI P I+ ++V W I E ++ + Sbjct: 395 HK-----VEYSNEKIPYREWEEDGLLTIQDKP--YIDYQDVLNWIIKMNEHYVVEKI--T 445 Query: 235 YDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALI 294 YD K+ + L+ N F RQ L K L+ +F++G I ++ +M+ + Sbjct: 446 YDRANAFKLNQELK-NYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYIN 504 Query: 295 NAVIKEDNIGIQVDKMKSTY-KIDVVDAIIDAFYDGM 330 N +K D G + +S Y KID A ++ + D M Sbjct: 505 NVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIM 541 >gi|2221|lcl|protein:vir:93883 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1485 # MgeName: 3A # Cross-refs: genbank:acc:YP_239935;genbank:gi:66395593;genbank:GeneID :5130949 Length = 563 Score = 54.3 bits (129), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 20/273 (7%) Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 W K+NP L + + + + + + G DF K N + D SF+D ++ Sbjct: 286 WIKANPNLGVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQ 342 Query: 121 --NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 N ++ ++ G+ +G D S D TA + ++G K + HS+IP + Sbjct: 343 KNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFAL--DNG--KVAVLSHSWIPKHK-- 396 Query: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 + + + YR+ E+ G T+ P I+ ++V W I E ++ + YD Sbjct: 397 ---VEYSNEKIPYREWEEDGLLTVQDKP--YIDYQDVLNWIIKMNEHYVVEKI--TYDRA 449 Query: 239 MTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVI 298 K+ + L+ N F RQ L K L+ +F++G I ++ +M+ + N + Sbjct: 450 NAFKLNQELK-NYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQL 508 Query: 299 KEDNIGIQVDKMKSTY-KIDVVDAIIDAFYDGM 330 K D G + +S Y KID A ++ + D M Sbjct: 509 KLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIM 541 >gi|11420|lcl|protein:vir:78630 Length: 563 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1855 # MgeName: tp310-2 # Cross-refs: genbank:acc:YP_001429940;genbank:gi:156603994;genbank:Ge neID:5525376 Length = 563 Score = 54.3 bits (129), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 20/273 (7%) Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 W K+NP L + + + + + + G DF K N + D SF+D ++ Sbjct: 286 WIKANPNLGVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQ 342 Query: 121 --NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 N ++ ++ G+ +G D S D TA + ++G K + HS+IP + Sbjct: 343 KNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFAL--DNG--KVAVLSHSWIPKHK-- 396 Query: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 + + + YR+ E+ G T+ P I+ ++V W I E ++ + YD Sbjct: 397 ---VEYSNEKIPYREWEEDGLLTVQDKP--YIDYQDVLNWIIKMNEHYVVEKI--TYDRA 449 Query: 239 MTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVI 298 K+ + L+ N F RQ L K L+ +F++G I ++ +M+ + N + Sbjct: 450 NAFKLNQELK-NYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQL 508 Query: 299 KEDNIGIQVDKMKSTY-KIDVVDAIIDAFYDGM 330 K D G + +S Y KID A ++ + D M Sbjct: 509 KLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIM 541 >gi|3108|lcl|protein:vir:94427 Length: 563 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1506 # MgeName: 47 # Cross-refs: genbank:acc:YP_240002;genbank:gi:66395661;genbank:GeneID :5133087 Length = 563 Score = 54.3 bits (129), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/273 (24%), Positives = 119/273 (43%), Gaps = 20/273 (7%) Query: 61 WAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIE 120 W K+NP L + + + + + + G DF K N + D SF+D ++ Sbjct: 286 WIKANPNLGVSINLDEMKEEWEKAKRTPAERG---DFITKRFNIFANNDEMSFIDYPTLQ 342 Query: 121 --NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 N ++ ++ G+ +G D S D TA + ++G K + HS+IP + Sbjct: 343 KNNEIVSLEELEGRPCTIGYDLSETEDFTAACATFAL--DNG--KVAVLSHSWIPKHK-- 396 Query: 179 SLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAM 238 + + + YR+ E+ G T+ P I+ ++V W I E ++ + YD Sbjct: 397 ---VEYSNEKIPYREWEEDGLLTVQDKP--YIDYQDVLNWIIKMNEHYVVEKI--TYDRA 449 Query: 239 MTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVI 298 K+ + L+ N F RQ L K L+ +F++G I ++ +M+ + N + Sbjct: 450 NAFKLNQELK-NYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYINNVQL 508 Query: 299 KEDNIGIQVDKMKSTY-KIDVVDAIIDAFYDGM 330 K D G + +S Y KID A ++ + D M Sbjct: 509 KLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIM 541 >gi|8807|lcl|protein:vir:96981 Length: 563 # NCBI annotation: ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1643 # MgeName: 42e # Cross-refs: genbank:acc:YP_239856;genbank:gi:66395511;genbank:GeneID :5133014 Length = 563 Score = 53.9 bits (128), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 73/277 (26%), Positives = 121/277 (43%), Gaps = 28/277 (10%) Query: 61 WAKSNPLL----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDL 116 W K+NP L DL+ +E K KR D DF K N + D SF+D Sbjct: 286 WIKANPNLGVSIDLDEMKEEWEKA---KRTPD----ERGDFITKRFNIFANNDEMSFIDY 338 Query: 117 KDIE--NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPW 174 ++ N +I ++ G+ +G D S D TA + ++G K + HS+IP Sbjct: 339 PTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFAL--DNG--KVAVLTHSWIPK 394 Query: 175 QQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFG 234 + + + + Y + E+ G TI +P I+ ++V W I E ++ + Sbjct: 395 HK-----VEYSNEKIPYIEWEEDGLLTIQDNP--YIDYQDVLNWIIKMNEHYVVEKI--T 445 Query: 235 YDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALI 294 YD K+ + L+ N F RQ L K L+ +F++G I ++ +M+ + Sbjct: 446 YDRANAFKLNQELK-NYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYIN 504 Query: 295 NAVIKEDNIGIQVDKMKSTY-KIDVVDAIIDAFYDGM 330 N +K D G + +S Y KID A ++ + D M Sbjct: 505 NVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIM 541 >gi|14327|lcl|protein:vir:9358 Length: 453 # NCBI annotation: terminase-large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:166 # MgeName: phi 12 # Cross-refs: genbank:acc:NP_803336;genbank:gi:29028647;genbank:GeneID :1258090 Length = 453 Score = 52.8 bits (125), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 118/277 (42%), Gaps = 28/277 (10%) Query: 61 WAKSNPLL----DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDL 116 W K+NP L DL +E K KR D DF K N + D SF+D Sbjct: 176 WIKANPNLGVSIDLAEMKEEWEKA---KRTPD----ERGDFITKRFNIFANNDEMSFIDY 228 Query: 117 KDIE--NAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPW 174 ++ N +I ++ G+ +G D S D TA + + K + HS+IP Sbjct: 229 PTLQKNNDIISLDELEGRPCTIGYDLSETEDFTAACATFAL----DNGKVAVLTHSWIPK 284 Query: 175 QQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFG 234 + + + + Y + E+ G TI +P I+ ++V W I E ++ + Sbjct: 285 HK-----VEYSNEKIPYIEWEEDGLLTIQDNP--YIDYQDVLNWIIKMNEHYVVEKI--T 335 Query: 235 YDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALI 294 YD K+ + L+ N F RQ L K L+ +F++G I ++ +M+ + Sbjct: 336 YDRANAFKLNQELK-NYGFETEETRQGALTLSPALKDLKEMFLDGKIIFNNNPLMKWYIN 394 Query: 295 NAVIKEDNIGIQVDKMKSTY-KIDVVDAIIDAFYDGM 330 N +K D G + +S Y KID A ++ + D M Sbjct: 395 NVQLKLDRNGNWLPSKQSRYRKIDGFAAFLNTYTDIM 431 >gi|14824|lcl|protein:vir:4088 Length: 550 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:86 # MgeName: 2389 # Cross-refs: genbank:acc:NP_510983;swissprot:trembl:q8w607;genbank:gi :17488505;uniprot:Q8W607;genbank:GeneID:1260359 Length = 550 Score = 49.7 bits (117), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 70/303 (23%), Positives = 129/303 (42%), Gaps = 22/303 (7%) Query: 3 NRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWA 62 +R+F + Y SV +D+K+L Q + + + ++ + + D+ DEV WA Sbjct: 225 SRRFHLTTDGYVRGSV--LDDRKVLAQQVLNGEKPNSKMF-PFICKLDSPDEVQNKTKWA 281 Query: 63 KSNPL-LDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADSNSFLDLKDIEN 121 K+NP+ L + R + + D + S S + +F K MNC + + DI+ Sbjct: 282 KANPMILYYKPLRIEIDQHWDDAQSS---SEIMVEFMTKRMNCPTQDPTTVAVKWDDIKA 338 Query: 122 AVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLE 181 P ++ G+D + D A+G ++ G K+ + H+FI A SL Sbjct: 339 TNQPMPSLKMAPAIGGIDFADVRDFCAVGLLFKKEG-----KYIFKHHTFIC---AESL- 389 Query: 182 AKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTD 241 K+ + + +KG TI I+ + +WF++ ++++ ++ D+ Sbjct: 390 -KITKFKFPIHEAVEKGLATIIH--DNYIDEDYPLQWFLEQAKEHR--IINIATDSFRY- 443 Query: 242 KIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKED 301 K +K ++ PL+ +R + + LF I DD +MR N IK D Sbjct: 444 KSLKEAFTSAGAPLIQVRSGPYSHNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFD 503 Query: 302 NIG 304 G Sbjct: 504 ARG 506 >gi|19608|lcl|protein:vir:4081 Length: 518 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:85 # MgeName: c2 # Cross-refs: genbank:acc:NP_043560;genbank:gi:9628694;genbank:GeneID: 1261154 Length = 518 Score = 40.0 bits (92), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/288 (21%), Positives = 119/288 (41%), Gaps = 34/288 (11%) Query: 41 TYLCLVWSQDNLDEVFQPETWAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVK 100 ++ ++ D+ DEV + K+NP L E++ K + + + +A K Sbjct: 245 SHWVFYYALDDYDEVKDSSKYIKANPALGYTLSLEDIQKDFIGAIGNPV---KMAKIITK 301 Query: 101 NMNCWLLADSNSFLDLKDIENAVIPEFDIRGKRVYVGLDASMFSD--NTAIGFVYPYVGE 158 N + DS + + ++ ++P D G+ V +G D S+ D T IG+ E Sbjct: 302 RFNL-SMTDSTTIFSKQLVDKCLVPPLDFSGRLVAIGSDFSVRGDVWGTVIGY-----RE 355 Query: 159 DGSQKWHIEQHSFIPWQQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRW 218 +G ++ + +P S E K + G + +G +T +E + Sbjct: 356 NGH--YYFKAIPVMP----ESAEDKFKHLG---ETITHEGINNMT---------DEAWDA 397 Query: 219 FIDYVEDNQLDVVFFGYDAMMTDKIIKSLESNTNFPLM-PIRQRTSELKDPTKFLQTLFI 277 F+ + N + YD I E + + Q + +L + + Q L Sbjct: 398 FMSAM--NGSVPIALNYDPNYAKNFIDKFEQTYDIEFYNKVMQNSFKLSNTLEATQKLME 455 Query: 278 EGNITRLDDEIMRKALINAVIKEDNIGI-QVDKMKSTYKIDVVDAIID 324 EG I D +++ L+NA K ++ G+ ++ K T KID+ DA+I+ Sbjct: 456 EGKI-HFDSKLLAVHLMNAETKINDFGLMRIIKKGYTDKIDLADALIN 502 >gi|10332|lcl|protein:vir:97407 Length: 514 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1675 # MgeName: Q54 # Cross-refs: genbank:acc:YP_762597;genbank:gi:115304298;genbank:GeneI D:5130610 Length = 514 Score = 36.6 bits (83), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 71/324 (21%), Positives = 125/324 (38%), Gaps = 63/324 (19%) Query: 45 LVWSQDNLDEVFQPETWAKSNPLLDLES---ERENLMKGLMDKRDSDLLSGNLADFQVKN 101 L++ D+ ++ P W K+NP LD E + + L R S + + NL K Sbjct: 230 LIFELDDYSQIEDPNEWYKANPALDEAKGTVSTETITRELNAARHSTIKANNLFS---KR 286 Query: 102 MNCWLLADSNSFLDLKDIENAVIPEFDIRG----KRVYVGLDASMFSD---NTAIG---- 150 N + A + SF ++IE ++ + D K +G D S+ D N + Sbjct: 287 FNFSVNAVT-SFFTAEEIE--IVTDLDFEKVFYDKWAVLGCDFSLSGDTWGNVLLTKVED 343 Query: 151 --FVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQG 208 ++YP IP + + G Y D ++ Sbjct: 344 TLYIYP-----------------IPIRPKNVADKYKHLSGTFYHDEDKN----------- 375 Query: 209 LINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSLESN-TNFPLM-PIRQRTSELK 266 + + + D +++ ++ +V GYD + + E N LM ++Q + Sbjct: 376 --DTQAAVKLLFDKLQELRIGLVGIGYDPAYSANFLYLFEQNKIKARLMEKVKQNAFTVS 433 Query: 267 DPTKFLQTLFIEGNITRLDDEIMRKALINAVIK-EDNIGIQVDKMKSTYKIDVVDAIIDA 325 LQ L + + EIM++ L NA +K +D +++ K+ KID+VDA ++A Sbjct: 434 QHIMSLQRLLKTRGLL-YNSEIMKQHLRNARVKYKDTTQVRLVKVSDQSKIDLVDAAVNA 492 Query: 326 FYDGMYAF-----EDYAITNNPTW 344 +Y E Y N TW Sbjct: 493 L--AVYELNRDYVEKYFERNTKTW 514 >gi|6615|lcl|protein:vir:95986 Length: 553 # NCBI annotation: ORF005 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1594 # MgeName: 2638A # Cross-refs: genbank:acc:YP_239799;genbank:gi:66395455;genbank:GeneID :5132903 Length = 553 Score = 34.3 bits (77), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/296 (22%), Positives = 117/296 (39%), Gaps = 33/296 (11%) Query: 42 YLCLVWSQDNLDEVFQPETWAKSNPLLDLESERENLMKGLMDKRDSDLLS-----GNLAD 96 ++C + D+ +E+ + W K+NP+ E+ + + L + LS + Sbjct: 259 FICKI---DDKEELHDFDMWQKANPM--FEAPMNDYGRQLFQEVKQQYLSLKFNPSGRTE 313 Query: 97 FQVKNMNCWLLADSNSFLDLKDI--ENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYP 154 F K MN + DI N +P D GLD + D A+G ++ Sbjct: 314 FMTKRMNLPETDSQSVVAPWDDILATNRDMPSLD--NHECIGGLDYASLKDFAAVGLLFK 371 Query: 155 YVGEDGSQKWHIEQHSFIPWQQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEE 214 D W + HSF ++A E +++ + +KG TI P I+P+ Sbjct: 372 V---DDEYIW--KTHSFA--RKAFLDEYQLKPP---IHEWAEKGLLTIVDEPT--ISPKH 419 Query: 215 VYRWFIDYVEDNQLDVVFFGYDAMMTDKIIKSLESN-TNFPLMPIRQRTSELKDPTKFLQ 273 + WF++ + L V D D + E N ++ ++ + L P ++ Sbjct: 420 IIDWFLEAQKHYGLKKVI--ADNFRMDLLRPLFEENDIDYEVVKNTRAIQSLLAPR--VE 475 Query: 274 TLFIEGNITRLDDEIMRKALINAVIKEDNIGIQVDKMKSTY--KIDVVDAIIDAFY 327 +F + NI D+ +MR N +K D G + + K K D A+I A Y Sbjct: 476 DMFAQQNIIFGDNPLMRWYTGNVAVKIDKYGNKTYEKKEPVRRKTDGFQALIHALY 531 >gi|15774|lcl|protein:vir:6239 Length: 527 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:131 # MgeName: phi-BT1 # Cross-refs: genbank:acc:NP_813693;swissprot:trembl:q859c4;genbank:gi :29366753;interpro:IPR005021;uniprot:Q859C4;genbank:Gene ID:1258893 Length = 527 Score = 33.5 bits (75), Expect = 0.004, Method: Compositional matrix adjust. Identities = 83/360 (23%), Positives = 145/360 (40%), Gaps = 74/360 (20%) Query: 6 FIQISTAYPNPSVPFREDQKILQQAMEDDDNRDAD--TYLCLVWSQDNLDEV--FQPETW 61 F+ ISTA P+P PF L + E ++ +AD T W + V PE W Sbjct: 206 FLIISTAGPDPDGPF----AALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLDPEVW 261 Query: 62 AKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWL---LADSNSFLDLKD 118 A+ NP D+ + ++ ++ L+ F V+ + WL L DS + D Sbjct: 262 ARCNPSYDILNP-DDFKAAAQRSTEASFRIYRLSQF-VRGASTWLPHGLWDSLAADDDDP 319 Query: 119 IENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAG 178 +E G V G D S D+TA+ V V + F+ G Sbjct: 320 LEP---------GDEVVCGFDGSWKGDSTAL--VACRVR---------DLRVFV----LG 355 Query: 179 SLEAKMEQDGVNYR----DLEQKGYCTI-TSHPQGLINPEEVYRWFIDYVEDNQLDVVFF 233 EA D +++R D+ + + + T + L+ + YRW + DN L+ F Sbjct: 356 HWEAPA--DDIHWRVPMADVREALHSALDTYRVRNLV--ADPYRW--EETLDN-LEAEGF 408 Query: 234 GYDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKAL 293 +A T+ + + + + T + D + +G ++ + + + + Sbjct: 409 PVEAFPTNSLARMVPA------------TQAVYDACR-------DGRLSHDGNPALARHI 449 Query: 294 INAVIKEDNIGIQVDK--MKSTYKIDVVDAIIDAFYDGMYAFEDYAITNN----PTWKVE 347 NAV+KED G ++ K S KID+ A++ A + + ED +T + TW+ + Sbjct: 450 GNAVLKEDARGARITKEFGASRRKIDLAVAMVLAVWGAVMWREDNGLTTDTAIVATWETD 509 >gi|1673|lcl|protein:vir:100634 Length: 553 # NCBI annotation: 77ORF003 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1476 # MgeName: 77 # Cross-refs: genbank:acc:NP_958603;genbank:gi:41189518;genbank:GeneID :2743780 Length = 553 Score = 32.7 bits (73), Expect = 0.007, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 117/289 (40%), Gaps = 27/289 (9%) Query: 50 DNLDEVFQPETWAKSNPLLDLE-SERENLMKGLMDKRDSDLL--SGNLADFQVKNMNCWL 106 D+ EV +TW K+NP+L SE + +++ +DL N +F K MN Sbjct: 264 DDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPE 323 Query: 107 LADSNSFLDLKDI--ENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKW 164 + K+I N IP D + GLD + D ++G ++ ++ W Sbjct: 324 VDLEKVIAPWKEILATNREIPNLD--NQMCIGGLDFANIRDFASVGLLFR---KNDDYIW 378 Query: 165 HIEQHSFIPWQQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVE 224 HSF+ +Q + K+E ++ E+ G TI +I E + WF+ E Sbjct: 379 L--GHSFV--RQGFLDDVKLEPP---IKEWEKMGLLTIVD--DDVIEIEYIVDWFLKARE 429 Query: 225 DNQLDVVFFGYDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRL 284 L+ V D TD + ++ E + L +R + + T+F + N+ Sbjct: 430 KYGLEKVI--ADNYRTDIVRRAFE-DAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYG 486 Query: 285 DDEIMRKALINAVIKEDNIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAF 333 D+ +MR N +K I+ D K K D V D F ++A Sbjct: 487 DNPLMRWFTNNVAVK-----IKPDGNKEYIKKDEVRRKTDGFMAFVHAL 530 >gi|6465|lcl|protein:vir:101288 Length: 553 # NCBI annotation: phage terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1591 # MgeName: phiNM3 # Cross-refs: genbank:acc:YP_908828;genbank:gi:118725092;genbank:GeneI D:4555859 Length = 553 Score = 31.6 bits (70), Expect = 0.016, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 117/285 (41%), Gaps = 24/285 (8%) Query: 50 DNLDEVFQPETWAKSNPLLDLE-SERENLMKGLMDKRDSDLL--SGNLADFQVKNMNCWL 106 D+ EV +TW K+NP+L SE + +++ +DL N +F K MN Sbjct: 264 DDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPE 323 Query: 107 LADSNSFLDLKDI--ENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKW 164 + K+I N IP D + GLD + D ++G ++ ++ W Sbjct: 324 VDLEKVIAPWKEILATNREIPNLD--NQMCIGGLDFANIRDFASVGLLFR---KNDDYIW 378 Query: 165 HIEQHSFIPWQQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVE 224 HSF+ +Q + K+E ++ E+ G TI +I E + WF+ E Sbjct: 379 L--GHSFV--RQGFLDDVKLEPP---IKEWEKMGLLTIVD--DDVIEIEYIVDWFLKARE 429 Query: 225 DNQLDVVFFGYDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRL 284 L+ V D TD + ++ E + L +R + + T+F + N+ Sbjct: 430 KYGLEKVI--ADNYRTDIVRRAFE-DAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYG 486 Query: 285 DDEIMRKALINAVIKEDNIGIQ--VDKMKSTYKIDVVDAIIDAFY 327 D+ +MR N +K G + + K ++ K D A + A Y Sbjct: 487 DNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALY 531 >gi|18552|lcl|protein:vir:9506 Length: 553 # NCBI annotation: hypothetical protein # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:170 # MgeName: phiN315 # Cross-refs: genbank:acc:NP_835553;genbank:gi:30043954;genbank:GeneID :1260583 Length = 553 Score = 31.6 bits (70), Expect = 0.016, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 117/285 (41%), Gaps = 24/285 (8%) Query: 50 DNLDEVFQPETWAKSNPLLDLE-SERENLMKGLMDKRDSDLL--SGNLADFQVKNMNCWL 106 D+ EV +TW K+NP+L SE + +++ +DL N +F K MN Sbjct: 264 DDPKEVDDRQTWEKANPMLHKPLSEYAKTLLSTIEEEYNDLPFNRSNKPEFMTKRMNLPE 323 Query: 107 LADSNSFLDLKDI--ENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKW 164 + K+I N IP D + GLD + D ++G ++ ++ W Sbjct: 324 VDLEKVIAPWKEILATNREIPNLD--NQMCIGGLDFANIRDFASVGLLFR---KNDDYIW 378 Query: 165 HIEQHSFIPWQQAGSLEAKMEQDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVE 224 HSF+ +Q + K+E ++ E+ G TI +I E + WF+ E Sbjct: 379 L--GHSFV--RQGFLDDVKLEPP---IKEWEKMGLLTIVD--DDVIEIEYIVDWFLKARE 429 Query: 225 DNQLDVVFFGYDAMMTDKIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRL 284 L+ V D TD + ++ E + L +R + + T+F + N+ Sbjct: 430 KYGLEKVI--ADNYRTDIVRRAFE-DAGIKLEVLRNPKAIHGLLAPRIDTMFAKHNVIYG 486 Query: 285 DDEIMRKALINAVIKEDNIGIQ--VDKMKSTYKIDVVDAIIDAFY 327 D+ +MR N +K G + + K ++ K D A + A Y Sbjct: 487 DNPLMRWFTNNVAVKVKPDGNKEYIKKDENRRKTDGFMAFVHALY 531 >gi|19024|lcl|protein:vir:9640 Length: 576 # NCBI annotation: large terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:173 # MgeName: 315.1 # Cross-refs: genbank:acc:NP_795402;genbank:gi:28876175;genbank:GeneID :1257725 Length = 576 Score = 30.8 bits (68), Expect = 0.027, Method: Compositional matrix adjust. Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 25/202 (12%) Query: 42 YLCLVWSQDNLDEVFQPETWAKSNPLL-----DLESERENLMKGLMDKRDSDLLSGNLAD 96 ++C + D EV E W K+NP+ D E +++ ++ D N + Sbjct: 254 FICKI---DEEHEVDDKEKWQKANPMFHEPMSDYAQELFDMVCEQYEEMVED--PSNREE 308 Query: 97 FQVKNMNCWLLADSNSFLDLKDIENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYV 156 F K M+ ++ S +++ D+RG+ GLD + D A+G ++ Sbjct: 309 FMTKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLF--- 365 Query: 157 GEDGSQKWHIEQHSFIPWQQAGSLEA-KMEQDGVN-------YRDLEQKGYCTITSHPQG 208 ++G+ + HSF+ + + +D +N + EQ+G T+ + Sbjct: 366 -KNGADYVWL-SHSFVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQEGLLTVID--EA 421 Query: 209 LINPEEVYRWFIDYVEDNQLDV 230 INP+ + WF+ ++ D+ Sbjct: 422 SINPQYIVDWFVKMRDEEGYDL 443 >gi|10934|lcl|protein:vir:78195 Length: 601 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1848 # MgeName: phiE12-2 # Cross-refs: genbank:acc:YP_001111154;genbank:gi:134288710;genbank:Ge neID:4960655 Length = 601 Score = 30.4 bits (67), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 18/138 (13%) Query: 78 MKGLMDKRDSDLLSGNLADFQVKNM-NCWLLADSNSFLDLKDIENAVIPEFD-------- 128 M G D D D L + + N+ C + DS S L D++ ++ ++ Sbjct: 353 MAGGCDLFDIDELRREYSAEEFANLLMCQFIDDSLSVFKLSDLQRCMVDSWEEWADDFSP 412 Query: 129 -----IRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIP---WQQAGSL 180 + V+VG D ++ D+ + V P +DG+ + +E+H F +QA ++ Sbjct: 413 LLLRPFGYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFR-VLERHQFRGNDFEEQAAAI 471 Query: 181 EAKMEQDGVNYRDLEQKG 198 EA ++ V Y ++ G Sbjct: 472 EAITQRYNVGYIAIDTTG 489 >gi|9890|lcl|protein:vir:103970 Length: 601 # NCBI annotation: phage terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1665 # MgeName: phi52237 # Cross-refs: genbank:acc:YP_293751;genbank:gi:72537721;genbank:GeneID :3608097 Length = 601 Score = 30.4 bits (67), Expect = 0.038, Method: Compositional matrix adjust. Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 18/138 (13%) Query: 78 MKGLMDKRDSDLLSGNLADFQVKNM-NCWLLADSNSFLDLKDIENAVIPEFD-------- 128 M G D D D L + + N+ C + DS S L D++ ++ ++ Sbjct: 353 MAGGCDLFDIDELRREYSAEEFANLLMCQFIDDSLSVFKLSDLQRCMVDSWEEWADDFSP 412 Query: 129 -----IRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIP---WQQAGSL 180 + V+VG D ++ D+ + V P +DG+ + +E+H F +QA ++ Sbjct: 413 LLLRPFGYREVWVGYDPALTGDSAGLVVVAPPRVDDGAFR-VLERHQFRGNDFEEQAAAI 471 Query: 181 EAKMEQDGVNYRDLEQKG 198 EA ++ V Y ++ G Sbjct: 472 EAITQRYNVGYIAIDTTG 489 >gi|11926|lcl|protein:vir:79177 Length: 589 # NCBI annotation: gp4, phage terminase, ATPase subunit # Family: family:all:169 # MgeID: mge:1866 # MgeName: phiE202 # Cross-refs: genbank:acc:YP_001111035;genbank:gi:134288784;genbank:Ge neID:4960696 Length = 589 Score = 30.0 bits (66), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 17/113 (15%) Query: 102 MNCWLLADSNSFLDLKDIENAVIPEFD-------------IRGKRVYVGLDASMFSDNTA 148 + C + DS S L D++ ++ ++ + V+VG D ++ D+ Sbjct: 366 LMCHFIDDSLSVFKLSDLQRCMVDSWEEWADDFSPLLLRPFGHREVWVGYDPALTGDSAG 425 Query: 149 IGFVYPYVGEDGSQKWHIEQHSFIP---WQQAGSLEAKMEQDGVNYRDLEQKG 198 + V P +DG+ + +E+H F +QA ++EA ++ V Y ++ G Sbjct: 426 LVVVAPPRVDDGAFR-VLERHQFRGNDFEEQAAAIEAITQRYNVGYIAIDTTG 477 >gi|15412|lcl|protein:vir:1325 Length: 519 # NCBI annotation: gp33 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:28 # MgeName: phi-C31 # Cross-refs: genbank:acc:NP_047924;swissprot:trembl:q9t214;genbank:gi :9631142;uniprot:Q9T214;genbank:GeneID:2715903 Length = 519 Score = 30.0 bits (66), Expect = 0.052, Method: Compositional matrix adjust. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 278 EGNITRLDDEIMRKALINAVIKEDNIGIQVDK--MKSTYKIDVVDAIIDAFYDGMYAFED 335 +G ++ + + + + NAV+KED G ++ K S KID+ A++ A + + ED Sbjct: 430 DGRLSHDGNPALGRHIGNAVLKEDARGARITKEHASSRRKIDLAVAMVLAVHGAVMWRED 489 Query: 336 YAITNN 341 I ++ Sbjct: 490 NGIVSD 495 Score = 26.2 bits (56), Expect = 0.58, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 31/155 (20%) Query: 6 FIQISTAYPNPSVPFREDQKILQQAMEDDDNRDAD--TYLCLVW------SQDNLDEVFQ 57 F+ ISTA P+P PF L + E ++ +AD T W + D+LD Sbjct: 203 FLIISTAGPDPDGPF----AALCEQGERVNSGEADDPTLFYRSWGPKLGETVDHLD---- 254 Query: 58 PETWAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWL---LADSNSFL 114 P+ W NP D+ + ++ ++ L+ F V+ + WL L DS Sbjct: 255 PDVWRACNPSYDILNP-DDFKAAAQRSTEASFRIYRLSQF-VRGASTWLPHGLWDS---- 308 Query: 115 DLKDIENAVIPEFDIRGKRVYVGLDASMFSDNTAI 149 L ++ + P G V +G D S D+TA+ Sbjct: 309 -LAADDDPLEP-----GDEVVLGFDGSWKGDSTAL 337 >gi|7042|lcl|protein:vir:98644 Length: 576 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1601 # MgeName: phi3396 # Cross-refs: genbank:acc:YP_001039919;genbank:gi:126011094;genbank:Ge neID:4818480 Length = 576 Score = 29.6 bits (65), Expect = 0.056, Method: Compositional matrix adjust. Identities = 40/200 (20%), Positives = 81/200 (40%), Gaps = 21/200 (10%) Query: 42 YLCLVWSQDNLDEVFQPETWAKSNPLLD--LESERENLMKGLMDKRDSDLLS-GNLADFQ 98 ++C + D EV E W K+NP+ + + L + ++ + + N +F Sbjct: 254 FICKI---DEEHEVDDKEKWQKANPMFHQPMSDYAQELFDMVCEQYEEMIEDPSNREEFM 310 Query: 99 VKNMNCWLLADSNSFLDLKDIENAVIPEFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGE 158 K M+ ++ S +++ D+RG+ GLD + D A+G ++ + Sbjct: 311 TKRMDFPVMDVERSVASHEELVATKRELPDMRGEVCIGGLDYAAIRDFAAVGLLFK---D 367 Query: 159 DGSQKWHIEQHSFIPWQQAGSLEA-KMEQDGVN-------YRDLEQKGYCTITSHPQGLI 210 W HSF+ + + +D +N + EQ+G T+ + I Sbjct: 368 RDDYVWL--SHSFVRKEFVDTYYGYSKRKDSINGKRQFAPIKKWEQEGLLTVID--EASI 423 Query: 211 NPEEVYRWFIDYVEDNQLDV 230 NP+ + WF+ ++ D+ Sbjct: 424 NPQYIVDWFVKMRDEEGYDL 443 >gi|17978|lcl|protein:vir:4335 Length: 563 # NCBI annotation: terminase # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:93 # MgeName: D3 # Cross-refs: genbank:acc:NP_061498;genbank:gi:9635588;genbank:GeneID: 1262853 Length = 563 Score = 29.3 bits (64), Expect = 0.080, Method: Compositional matrix adjust. Identities = 58/296 (19%), Positives = 117/296 (39%), Gaps = 28/296 (9%) Query: 9 ISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKSNPLL 68 I+TA N P E ++ + + +E + T ++++ D D P + K+NP Sbjct: 240 ITTAGSNLGGPCHEKRRDVIRILEGQTIDE--TIFGIIYTIDEDDPWDDPASLIKANPNY 297 Query: 69 DLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWLLADS---NSFLDLKDIENAVIP 125 + + L+ L + S + F+ K++N W+ A + N + + I Sbjct: 298 GVSVFPDFLLAQLQQAKRS---ASKQNAFRTKHLNQWVGARTVWMNMLAWQRQKRDFTIA 354 Query: 126 EFDIRGKRVYVGLDASMFSDNTAIGFVYPYVGEDGSQKWHIEQHSFIPWQQAGSLEAKME 185 D+ G R ++ LD + D A+ ++ G Q IP Sbjct: 355 --DMAGCRCWMALDLASKKDVAALVMLFEKAG----------QFYCIP---RFYAPEAAA 399 Query: 186 QDGVNYRDLEQKGYCTITSHPQGLINPEEVYRWFIDYVEDNQLDVVFFGYDAMMTDKIIK 245 ++ Y++ +G+ +T P + + + +D + Q+D+ +D + +I Sbjct: 400 EENEKYQNFALEGHLVLT--PGSMTDYAFIEADILDLAK--QIDLQDAAFDDWQANYLIT 455 Query: 246 SLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKED 301 L SNT+ P++ Q + DP K ++ I + + +M + N K D Sbjct: 456 RL-SNTSIPVVDFNQTVKNMSDPMKEVEARVIARTLWHDGNPVMTWMMGNVAAKID 510 >gi|19080|lcl|protein:vir:1659 Length: 540 # NCBI annotation: terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:34 # MgeName: sk1 # Cross-refs: genbank:acc:NP_044948;genbank:gi:9629655;genbank:GeneID: 1261297 Length = 540 Score = 28.5 bits (62), Expect = 0.12, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 133 RVYVGLDASMFSDNTAIGFVYPYVGEDGSQ 162 R YVG+D S+ D TA+ FV G+ S Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTYSH 375 >gi|2310|lcl|protein:vir:93989 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1487 # MgeName: jj50 # Cross-refs: genbank:acc:YP_764316;genbank:gi:115315630;genbank:GeneI D:5176576 Length = 540 Score = 28.5 bits (62), Expect = 0.13, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 133 RVYVGLDASMFSDNTAIGFVYPYVGEDGSQ 162 R YVG+D S+ D TA+ FV G+ S Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTYSH 375 >gi|15547|lcl|protein:vir:856 Length: 540 # NCBI annotation: putative terminase subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:18 # MgeName: bIL170 # Cross-refs: genbank:acc:NP_047115;genbank:gi:9630568;genbank:GeneID: 1261755 Length = 540 Score = 28.5 bits (62), Expect = 0.13, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 133 RVYVGLDASMFSDNTAIGFVYPYVGEDGSQ 162 R YVG+D S+ D TA+ FV G+ S Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTYSH 375 >gi|1848|lcl|protein:vir:93873 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1479 # MgeName: 712 # Cross-refs: genbank:acc:YP_764262;genbank:gi:115315575;genbank:GeneI D:5141567 Length = 540 Score = 28.5 bits (62), Expect = 0.14, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 133 RVYVGLDASMFSDNTAIGFVYPYVGEDGSQ 162 R YVG+D S+ D TA+ FV G+ S Sbjct: 346 RTYVGIDLSLIGDLTAVSFVCELEGKTYSH 375 >gi|4336|lcl|protein:vir:94893 Length: 540 # NCBI annotation: putative terminase large subunit # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1532 # MgeName: P008 # Cross-refs: genbank:acc:YP_762513;genbank:gi:115304212;genbank:GeneI D:5141206 Length = 540 Score = 28.1 bits (61), Expect = 0.16, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 133 RVYVGLDASMFSDNTAIGFV 152 R YVG+D S+ D TA+ FV Sbjct: 346 RTYVGIDLSLIGDLTAVSFV 365 >gi|13269|lcl|protein:vir:81252 Length: 542 # NCBI annotation: gp2, terminase # Family: family:all:523 # MgeID: mge:1893 # MgeName: BFK20 # Cross-refs: genbank:acc:YP_001456732;genbank:gi:157168375;interpro:I PR005021;uniprot:Q9MBK3;genbank:GeneID:5580375 Length = 542 Score = 27.3 bits (59), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 1/80 (1%) Query: 2 PNRQFIQISTAYPNPSVPFREDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETW 61 P Q S A SV R+ + I + + D D WS +F + W Sbjct: 219 PRNQVYGFSNAGDEKSVVLRKQRNICLKEISDGIT-DQSQLAIFEWSAPEECSIFDRDGW 277 Query: 62 AKSNPLLDLESERENLMKGL 81 A +NP L + E M L Sbjct: 278 AAANPSLGYGNRDEKTMLSL 297 >gi|12826|lcl|protein:vir:80335 Length: 571 # NCBI annotation: gp2, phage terminase, large subunit, putative # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1881 # MgeName: phi644-2 # Cross-refs: genbank:acc:YP_001111081;genbank:gi:134288625;genbank:Ge neID:4960582 Length = 571 Score = 26.9 bits (58), Expect = 0.41, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 17/140 (12%) Query: 9 ISTAYPNPSVPF----REDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKS 64 I+TA N P R+ ++L+ + DD+ +W+ D D+ P AK+ Sbjct: 240 ITTAGANIEGPCYDKRRQVIEMLEGTVPDDE------LFGWIWTIDEDDDWTDPRVLAKA 293 Query: 65 NPLLDLESERENLMKGLMDKRDSDLLSGNLAD-FQVKNMNCWLLADSNSF--LDLKDIEN 121 NP + + +E L ++ + S + F+ K++N W A + F D K E+ Sbjct: 294 NPNIGISVYQEY----LESQQQRAIKSARFTNTFKTKHLNVWTSAKAGYFNLEDWKACED 349 Query: 122 AVIPEFDIRGKRVYVGLDAS 141 + G+ + LD + Sbjct: 350 RSLSLEQFEGQDCVLALDMA 369 >gi|13932|lcl|protein:vir:1429 Length: 570 # NCBI annotation: putative terminase (large subunit) # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:30 # MgeName: phiE125 # Cross-refs: genbank:acc:NP_536358;genbank:gi:17975163;genbank:GeneID :929161 Length = 570 Score = 26.6 bits (57), Expect = 0.51, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 31/147 (21%) Query: 9 ISTAYPNPSVPF----REDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKS 64 I+TA N P R+ ++L+ + DD+ +W+ D D+ P AK+ Sbjct: 239 ITTAGANIEGPCFDKRRQVIEMLEGTVPDDE------LFGWIWTIDEGDDWTDPRVLAKA 292 Query: 65 NPLLD-------LESERENLMKGLMDKRDSDLLSGNLAD-FQVKNMNCWLLADSNSF--L 114 NP + LES+++ +K S + F+ K++N W A + F Sbjct: 293 NPNIGISVYQDYLESQQQRAIK-----------SARFTNTFKTKHLNVWTSAKAGYFNLE 341 Query: 115 DLKDIENAVIPEFDIRGKRVYVGLDAS 141 D K E+ + G+ + LD + Sbjct: 342 DWKSCEDRSLTLEQFEGQDCVLALDMA 368 >gi|8562|lcl|protein:vir:100097 Length: 571 # NCBI annotation: gp2 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1639 # MgeName: phi1026b # Cross-refs: genbank:acc:NP_945032;genbank:gi:38707892;genbank:GeneID :2744144 Length = 571 Score = 26.6 bits (57), Expect = 0.53, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 31/147 (21%) Query: 9 ISTAYPNPSVPF----REDQKILQQAMEDDDNRDADTYLCLVWSQDNLDEVFQPETWAKS 64 I+TA N P R+ ++L+ + DD+ +W+ D D+ P AK+ Sbjct: 239 ITTAGANIEGPCFDKRRQVIEMLEGTVPDDE------LFGWIWTIDEGDDWTDPRVLAKA 292 Query: 65 NPLLD-------LESERENLMKGLMDKRDSDLLSGNLAD-FQVKNMNCWLLADSNSF--L 114 NP + LES+++ +K S + F+ K++N W A + F Sbjct: 293 NPNIGISVYQDYLESQQQRAIK-----------SARFTNTFKTKHLNVWTSAKAGYFNLE 341 Query: 115 DLKDIENAVIPEFDIRGKRVYVGLDAS 141 D K E+ + G+ + LD + Sbjct: 342 DWKSCEDRSLTLEQFEGQDCVLALDMA 368 >gi|2172|lcl|protein:vir:100329 Length: 605 # NCBI annotation: terminase ATPase subunit # Family: family:all:169 # MgeID: mge:1484 # MgeName: phi-MhaA1-PHL101 # Cross-refs: genbank:acc:YP_655470;genbank:gi:109289938;genbank:GeneI D:4157372 Length = 605 Score = 26.2 bits (56), Expect = 0.69, Method: Compositional matrix adjust. Identities = 19/93 (20%), Positives = 42/93 (45%) Query: 242 KIIKSLESNTNFPLMPIRQRTSELKDPTKFLQTLFIEGNITRLDDEIMRKALINAVIKED 301 ++ +LES N +M + ++ K+ + L I + + +A +N IK Sbjct: 70 RVEATLESRLNLLIMKESKNNNDYKEMDALRRLLESTARIKKYSNGGGNEADLNPNIKNR 129 Query: 302 NIGIQVDKMKSTYKIDVVDAIIDAFYDGMYAFE 334 N G + ++ + + +I+ F DGM+ ++ Sbjct: 130 NKGDRKKPEQNAISEEQAELLINGFLDGMFHYQ 162 >gi|19384|lcl|protein:vir:7851 Length: 887 # NCBI annotation: gp8 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:150 # MgeName: CJW1 # Cross-refs: genbank:acc:NP_817458;genbank:gi:29565887;genbank:GeneID :1259165 Length = 887 Score = 25.4 bits (54), Expect = 0.99, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Query: 314 YKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAW 357 YK + DA ++FYD + A A+ +NP+ + +LAW Sbjct: 481 YKKRIYDAKTNSFYDVIAADAKSALGSNPS----GCGADEILAW 520 >gi|3559|lcl|protein:vir:101786 Length: 556 # NCBI annotation: gp9 # Family: family:all:35 # ACLAME annotation(s): phi:0000073 - phage terminase large subunit # MgeID: mge:1515 # MgeName: 244 # Cross-refs: genbank:acc:YP_654764;genbank:gi:109302762;genbank:GeneI D:4156221 Length = 556 Score = 25.4 bits (54), Expect = 1.1, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Query: 314 YKIDVVDAIIDAFYDGMYAFEDYAITNNPTWKVEHMSQEAVLAW 357 YK + DA ++FYD + A A+ +NP+ + +LAW Sbjct: 150 YKKRIYDAKTNSFYDVIAADAKSALGSNPS----GCGADEILAW 189 >gi|11235|lcl|protein:vir:78494 Length: 562 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1853 # MgeName: U2 # Cross-refs: genbank:acc:YP_001491581;genbank:gi:157786404;genbank:Ge neID:5625646 Length = 562 Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 16/20 (80%) Query: 130 RGKRVYVGLDASMFSDNTAI 149 +G+R+ +G D S+ +D+TA+ Sbjct: 368 KGERITLGFDGSLSNDHTAL 387 >gi|10991|lcl|protein:vir:78228 Length: 903 # NCBI annotation: Putative terminase # Family: family:all:1551 # MgeID: mge:1849 # MgeName: Bethlehem # Cross-refs: genbank:acc:YP_001491662;genbank:gi:157786486;genbank:Ge neID:5625706 Length = 903 Score = 24.6 bits (52), Expect = 2.0, Method: Compositional matrix adjust. Identities = 8/20 (40%), Positives = 16/20 (80%) Query: 130 RGKRVYVGLDASMFSDNTAI 149 +G+R+ +G D S+ +D+TA+ Sbjct: 709 KGERITLGFDGSLSNDHTAL 728 >gi|17795|lcl|protein:vir:2426 Length: 595 # NCBI annotation: gp13 # Family: family:all:1551 # MgeID: mge:52 # MgeName: D29 # Cross-refs: genbank:acc:NP_046828;genbank:gi:9630396;genbank:GeneID: 1261617 Length = 595 Score = 23.9 bits (50), Expect = 3.6, Method: Compositional matrix adjust. Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Query: 106 LLADSNSFLDLKDIENAVIPEFDIRGKRVYVGLDASMFSDNTAI 149 AD + +LD E A + RG+++ +G D S +D TA+ Sbjct: 382 CFADPDKYLDKMGFELAPLD----RGQKITLGFDGSKSNDWTAL 421 >gi|18494|lcl|protein:vir:1636 Length: 469 # NCBI annotation: putative terminase # Family: family:all:523 # MgeID: mge:33 # MgeName: r1t # Cross-refs: genbank:acc:NP_695057;genbank:gi:23455748;genbank:GeneID :955481 Length = 469 Score = 22.3 bits (46), Expect = 8.6, Method: Compositional matrix adjust. Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Query: 47 WSQDNLDEVFQPETWAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWL 106 WS +++ ++ E W SNP + L +++ L + D V+ + W Sbjct: 226 WSVEDVKDIHDVEAWYNSNPSMGYH---------LNERKIEAELGEDKLDHNVQRLGYWP 276 Query: 107 LADSNSFLDLKDIENAVIPEFDIRGKRVYVGLDASMFSDNTAI 149 + S + ++ + + +++VG+ N A+ Sbjct: 277 KYNQKSVISEQEWNALKVNRLPVIKGKLFVGIKYGNDGANVAM 319 >gi|4240|lcl|protein:vir:94734 Length: 469 # NCBI annotation: large subunit terminase # Family: family:all:523 # MgeID: mge:1529 # MgeName: phi LC3 # Cross-refs: genbank:acc:NP_996704;genbank:gi:45597419;genbank:GeneID :2767958 Length = 469 Score = 22.3 bits (46), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 9/103 (8%) Query: 47 WSQDNLDEVFQPETWAKSNPLLDLESERENLMKGLMDKRDSDLLSGNLADFQVKNMNCWL 106 WS +++ ++ E W SNP + L +++ L + D V+ + W Sbjct: 226 WSVEDVKDIHDVEAWYNSNPSMGYH---------LNERKIEAELGEDKLDHNVQRLGYWP 276 Query: 107 LADSNSFLDLKDIENAVIPEFDIRGKRVYVGLDASMFSDNTAI 149 + S + ++ + + +++VG+ N A+ Sbjct: 277 KYNQKSVISEQEWNALKVNRLPVIKGKLFVGIKYGNDGANVAM 319 Database: capsid_neck_tail Posted date: Nov 7, 2013 12:16 PM Number of letters in database: 206,069 Number of sequences in database: 514 Lambda K H 0.318 0.135 0.405 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 184,906 Number of Sequences: 514 Number of extensions: 9092 Number of successful extensions: 154 Number of sequences better than 100.0: 67 Number of HSP's better than 100.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 27 Number of HSP's gapped (non-prelim): 74 length of query: 369 length of database: 206,069 effective HSP length: 73 effective length of query: 296 effective length of database: 168,547 effective search space: 49889912 effective search space used: 49889912 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 38 (19.2 bits)